Citrus Sinensis ID: 023761

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------
Protein Sequence
MASSSLATGTPSASAFSKNSSSLVHYYRNGTVFFRLSSSKPKLRFFAKGSQPSWKCATVVKSQLNEVAFDGSSNASATPAAETKDAKQPNEPSPSILASEESISEFISQVSSLIKLVDSRDIVELQLKQLDCELIIRKKEALPQPPAPASMAMMHSPSPPPVMPPTQPAPAPTSSAPSASPAPPASPPSSTAGKSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP
Secondary Structure (PSIPRED)
ccccccccccccccEEEcccccccccccccEEEEEEccccccccccccccccccccccEEEEcHHHHHccccccccccccccccccccccccccccccccccHHccHHHHHHHHHHHHHccccEEEEEcccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccEEccccEEEEEEEccccccccccccEEEEEEEcccccccccccccEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccEEEEEEEcEEEcccccccccccccccccccccccccccccccHHHccccHHHHHHHHHHHHccccEEEEEEcccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccEEEEcccccccccccccccEEccccEEEEEEEccEEEEEEccccEEEEEEccccccEEccccEEEEEcc
Coil and Loop (DISEMBL)
massslatgtpsasafsknSSSLVHYYRNGTVFFRlssskpklrffakgsqpswkcATVVKSQLNevafdgssnasatpaaetkdakqpnepspsilasEESISEFISQVSSLIKLVDSRDIVELQLKQLDCELIIRKkealpqppapasmammhspspppvmpptqpapaptssapsaspappasppsstagksvksslpplkcpmagtfyrspapgeppfvkvgdrvQKGQVLCIIEAMKLMNEIEADRSGTIVEIIaedrkpvsvdtplfviep
Flexible Loop (DISEMBL)
massslatgtpsasafsknSSSLVHYYRNGTVFFRLSSSKPKLRFfakgsqpswKCATVVKSQLNEVAFDGSSNASATPaaetkdakqpnepSPSILASEESISEFISQVSSLIKLVDSRDIVELQLKQLDCELIIRKKEALPQPPAPASMAMMHSPSPPPVMPPTQPAPAPTSSAPSASPAPPASPPSSTAGKSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEiiaedrkpvsvdtplfviep
Low Complexity Region (SEG)
MASSSLATGTPsasafsknsssLVHYYRNGTVFFRLSSSKPKLRFFAKGSQPSWKCATVVKSQLNEVAFDGSSNASATPAAETKDAKQPNEPSPSILASEESISEFISQVSSLIKLVDSRDIVELQLKQLDCELIIRKKEALpqppapasmammhspspppvmpptqpapaptssapsaspappasppsstaGKSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP
Disordered region (IsUnstruct)
**********************LVHYYRNGTVFFRLSSSKPKLRFFAKGSQPSWKCATVVKSQLN****************************************FISQVSSLIKLVDSRDIVELQLKQLDCELIIR************************************************************************************FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFV***
Disordered Region (DISOPRED)
**********************************************************VVKS********************************************ISQVSSLIKLVDSRDIVELQLKQLDCELIIRKKEA***********************************************************PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP
Disordered Region (DISEMBL)
******************NSSSLVHYYRNGTVFFRLSSSKPKLRFFAKGSQPSWKCATVVKSQLNEVAF***************************LASEESISEFISQVSSLIKLVDSRDIVELQLKQLDCELIIRKKEALPQPPAPASMAMMHSPS*****************************************LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP
Disordered Region (DISPRO)
**********PSAS*****SSSLVH**RNGTVFFRLSSSKPKLRFFAKGSQPSWKCATVVKSQLNEVAFD********************************ISEFISQVSSLIKLVDSRDIVELQLKQLDCELIIRKKE***********************************************************LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASSSLATGTPSASAFSKNSSSLVHYYRNGTVFFRLSSSKPKLRFFAKGSQPSWKCATVVKSQLNEVAFDGSSNASATPAAETKDAKQPNEPSPSILASEESISEFISQVSSLIKLVDSRDIVELQLKQLDCELIIRKKEALPQPPAPASMAMMHSPSPPPVMPPTQPAPAPTSSAPSASPAPPASPPSSTAGKSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	277	2.2.26 [Sep-21-2011]
Q42533	280	Biotin carboxyl carrier p	yes	no	0.978	0.967	0.573	8e-72
Q42783	262	Biotin carboxyl carrier p	yes	no	0.859	0.908	0.620	4e-64
Q9LLC1	255	Biotin carboxyl carrier p	no	no	0.711	0.772	0.540	2e-53
Q06881	182	Biotin carboxyl carrier p	yes	no	0.613	0.934	0.403	6e-29
P0ABE1	156	Biotin carboxyl carrier p	yes	no	0.555	0.987	0.394	1e-22
P0ABD8	156	Biotin carboxyl carrier p	N/A	no	0.555	0.987	0.394	1e-22
P0ABD9	156	Biotin carboxyl carrier p	yes	no	0.555	0.987	0.394	1e-22
P0ABE0	156	Biotin carboxyl carrier p	N/A	no	0.555	0.987	0.394	1e-22
P37799	156	Biotin carboxyl carrier p	yes	no	0.263	0.467	0.547	8e-18
Q1XDK5	158	Biotin carboxyl carrier p	N/A	no	0.552	0.968	0.335	1e-17

>sp|Q42533|BCCP1_ARATH Biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic OS=Arabidopsis thaliana GN=BCCP1 PE=1 SV=2

 Score =  270 bits (690), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 164/286 (57%), Positives = 207/286 (72%), Gaps = 15/286 (5%)

Query: 1   MASSSLATGTPSASA----FSKNSSSLVHYYRNGTVFFRLSSSKPKLRFFAKGSQPSWKC 56
           MASSS +  +P+A+A     ++ SS      R+  V FRLS+ KPKLRF +K S+ S+  
Sbjct: 1   MASSSFSVTSPAAAASVYAVTQTSSHFPIQNRSRRVSFRLSA-KPKLRFLSKPSRSSY-- 57

Query: 57  ATVVKSQLNEVAFDGSSNASATPAAETKDAKQPN---EPSPSI--LASEESISEFISQVS 111
             VVK+Q N+V+   SSNA+      + + K+ N   E S S   LA+EESISEF++QV+
Sbjct: 58  -PVVKAQSNKVSTGASSNAAKVDGPSSAEGKEKNSLKESSASSPELATEESISEFLTQVT 116

Query: 112 SLIKLVDSRDIVELQLKQLDCELIIRKKEALPQPPAPASMAMMHSPSPPPVMPPTQPAPA 171
           +L+KLVDSRDIVELQLKQLDCEL+IRKKEALPQP APAS  MM  P+ P      Q AP 
Sbjct: 117 TLVKLVDSRDIVELQLKQLDCELVIRKKEALPQPQAPASYVMMQQPNQPSY--AQQMAPP 174

Query: 172 PTSSAPSASPAPPASPPSSTAGKSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQK 231
              +A + +P+ PAS P  +     KSSLP +K PMAGTFYRSPAPGEPPF+KVGD+VQK
Sbjct: 175 AAPAAAAPAPSTPASLPPPSPPTPAKSSLPTVKSPMAGTFYRSPAPGEPPFIKVGDKVQK 234

Query: 232 GQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277
           GQVLCI+EAMKLMNEIE+D +GT+V+I+AED KPVS+DTPLFV++P
Sbjct: 235 GQVLCIVEAMKLMNEIESDHTGTVVDIVAEDGKPVSLDTPLFVVQP 280

This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
Arabidopsis thaliana (taxid: 3702)

>sp|Q42783|BCCP_SOYBN Biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic OS=Glycine max GN=ACCB-1 PE=1 SV=1

 Score =  244 bits (624), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 154/248 (62%), Positives = 187/248 (75%), Gaps = 10/248 (4%)

Query: 34  FRLSSSKPKLRFFAKGSQPSWKCATVVKSQLNEVAFDGSSNASATP-AAETKD---AKQP 89
            R S     LRF  K    +  C T VK+QLNEVA D SSNA++ P  A++K+   AK  
Sbjct: 21  LRFSPKPNNLRFATKPGN-TLLC-TRVKAQLNEVALDSSSNATSPPMKAKSKEEPPAKPL 78

Query: 90  NEPSPSILASEESISEFISQVSSLIKLVDSRDIVELQLKQLDCELIIRKKEALPQPPAPA 149
            EPS S+LA++ES+S+FI+QV+SL+KLVDSRDIVEL+LKQ D E+ IRKKEA+PQPP   
Sbjct: 79  AEPSSSVLATQESVSQFITQVASLVKLVDSRDIVELKLKQHDVEVTIRKKEAMPQPPPAP 138

Query: 150 SMAMMHSPSPPPVMPPTQPAPAPTSSAPSASPAPPASPPSSTAGKSVKSSLPPLKCPMAG 209
             ++++SP PP + PP  PA  P  +   A+P P ++P    A KS KSSLPPLK PMAG
Sbjct: 139 QPSVVYSPPPPALPPPPVPASTPAPTLARATPTPTSAP----AVKSAKSSLPPLKSPMAG 194

Query: 210 TFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVD 269
           TFYRSPAPGEP FVKVGD+V+KGQV+CIIEAMKLMNEIEAD+SGTIVEI+AED K VSVD
Sbjct: 195 TFYRSPAPGEPSFVKVGDKVKKGQVVCIIEAMKLMNEIEADQSGTIVEIVAEDAKSVSVD 254

Query: 270 TPLFVIEP 277
           TPLFVI+P
Sbjct: 255 TPLFVIQP 262

This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.

Glycine max (taxid: 3847)

>sp|Q9LLC1|BCCP2_ARATH Biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, chloroplastic OS=Arabidopsis thaliana GN=BCCP2 PE=1 SV=1

 Score =  209 bits (532), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 126/233 (54%), Positives = 155/233 (66%), Gaps = 36/233 (15%)

Query: 54  WKCATVVKSQLNEVAFDGSSNASATPAAETKDAKQPNEPSPSILASEESISEFISQVSSL 113
           W+    +++  NEV    S++   T         + N P P+       +SEF+++VS L
Sbjct: 50  WR----LRATTNEVV---SNSTPMTNGGYMNGKAKTNVPEPA------ELSEFMAKVSGL 96

Query: 114 IKLVDSRDIVELQLKQLDCELIIRKKEALPQ--PPAPASMAMMHSPSPPPVM-----PPT 166
           +KLVDS+DIVEL+LKQLDCE++IRKKEAL Q  PPAP   +M      PPVM     PP 
Sbjct: 97  LKLVDSKDIVELELKQLDCEIVIRKKEALQQAVPPAPVYHSM------PPVMADFSMPPA 150

Query: 167 QPA--PAPTSSAPSASPAPPASPPSSTAGKSVKSSLPPLKCPMAGTFYRSPAPGEPPFVK 224
           QP   P   +   + + A P S PSS        S PPLK PMAGTFYRSP PGEPPFVK
Sbjct: 151 QPVALPPSPTPTSTPATAKPTSAPSS--------SHPPLKSPMAGTFYRSPGPGEPPFVK 202

Query: 225 VGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277
           VGD+VQKGQ++CIIEAMKLMNEIEA++SGTI+E++AED KPVSVDTPLFVI P
Sbjct: 203 VGDKVQKGQIVCIIEAMKLMNEIEAEKSGTIMELLAEDGKPVSVDTPLFVIAP 255

This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q06881|BCCP_NOSS1 Biotin carboxyl carrier protein of acetyl-CoA carboxylase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=accB PE=1 SV=2

 Score =  127 bits (320), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 71/176 (40%), Positives = 101/176 (57%), Gaps = 6/176 (3%)

Query: 108 SQVSSLIKLVDSRDIVELQLKQLDCELIIRK-----KEALPQPPAPASMAMMHS-PSPPP 161
           +++  L+  +   DI E+ LK  D EL +RK        +P   AP S  +    PS  P
Sbjct: 6   NEIRQLLTTIAQTDIAEVTLKSDDFELTVRKAVGVNNSVVPVVTAPLSGVVGSGLPSAIP 65

Query: 162 VMPPTQPAPAPTSSAPSASPAPPASPPSSTAGKSVKSSLPPLKCPMAGTFYRSPAPGEPP 221
           ++    P+P+P      A+     S  S    K +   L  +  PM GTFYR+PAPGE  
Sbjct: 66  IVAHAAPSPSPEPGTSRAADHAVTSSGSQPGAKIIDQKLAEVASPMVGTFYRAPAPGEAV 125

Query: 222 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277
           FV+VGDR+++GQ +CIIEAMKLMNEIEAD SG ++EI+ ++ +PV  + PL  I+P
Sbjct: 126 FVEVGDRIRQGQTVCIIEAMKLMNEIEADVSGQVIEILVQNGEPVEYNQPLMRIKP 181

This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|P0ABE1|BCCP_SHIFL Biotin carboxyl carrier protein of acetyl-CoA carboxylase OS=Shigella flexneri GN=accB PE=3 SV=1

 Score =  106 bits (265), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/170 (39%), Positives = 97/170 (57%), Gaps = 16/170 (9%)

Query: 107 ISQVSSLIKLVDSRDIVELQLKQLDCELIIRKKEALPQPPAPASMAMMHSPSPPPVMPPT 166
           I ++  LI+LV+   I EL++   + E  +R   A P     AS  +M      P+M   
Sbjct: 3   IRKIKKLIELVEESGISELEIS--EGEESVRISRAAP----AASFPVMQQAYAAPMM--Q 54

Query: 167 QPAPAPTSSAPSASPAPPASPPSSTAGKSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVG 226
           QPA +  ++AP+  P+  A   +  +G  V+S       PM GTFYR+P+P    F++VG
Sbjct: 55  QPAQS-NAAAPATVPSMEAPAAAEISGHIVRS-------PMVGTFYRTPSPDAKAFIEVG 106

Query: 227 DRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276
            +V  G  LCI+EAMK+MN+IEAD+SGT+  I+ E  +PV  D PL VIE
Sbjct: 107 QKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 156

This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.

Shigella flexneri (taxid: 623)

>sp|P0ABD8|BCCP_ECOLI Biotin carboxyl carrier protein of acetyl-CoA carboxylase OS=Escherichia coli (strain K12) GN=accB PE=1 SV=1

 Score =  106 bits (265), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/170 (39%), Positives = 97/170 (57%), Gaps = 16/170 (9%)

Query: 107 ISQVSSLIKLVDSRDIVELQLKQLDCELIIRKKEALPQPPAPASMAMMHSPSPPPVMPPT 166
           I ++  LI+LV+   I EL++   + E  +R   A P     AS  +M      P+M   
Sbjct: 3   IRKIKKLIELVEESGISELEIS--EGEESVRISRAAP----AASFPVMQQAYAAPMM--Q 54

Query: 167 QPAPAPTSSAPSASPAPPASPPSSTAGKSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVG 226
           QPA +  ++AP+  P+  A   +  +G  V+S       PM GTFYR+P+P    F++VG
Sbjct: 55  QPAQS-NAAAPATVPSMEAPAAAEISGHIVRS-------PMVGTFYRTPSPDAKAFIEVG 106

Query: 227 DRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276
            +V  G  LCI+EAMK+MN+IEAD+SGT+  I+ E  +PV  D PL VIE
Sbjct: 107 QKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 156

This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.

Escherichia coli (strain K12) (taxid: 83333)

>sp|P0ABD9|BCCP_ECOL6 Biotin carboxyl carrier protein of acetyl-CoA carboxylase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=accB PE=3 SV=1

 Score =  106 bits (265), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/170 (39%), Positives = 97/170 (57%), Gaps = 16/170 (9%)

Query: 107 ISQVSSLIKLVDSRDIVELQLKQLDCELIIRKKEALPQPPAPASMAMMHSPSPPPVMPPT 166
           I ++  LI+LV+   I EL++   + E  +R   A P     AS  +M      P+M   
Sbjct: 3   IRKIKKLIELVEESGISELEIS--EGEESVRISRAAP----AASFPVMQQAYAAPMM--Q 54

Query: 167 QPAPAPTSSAPSASPAPPASPPSSTAGKSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVG 226
           QPA +  ++AP+  P+  A   +  +G  V+S       PM GTFYR+P+P    F++VG
Sbjct: 55  QPAQS-NAAAPATVPSMEAPAAAEISGHIVRS-------PMVGTFYRTPSPDAKAFIEVG 106

Query: 227 DRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276
            +V  G  LCI+EAMK+MN+IEAD+SGT+  I+ E  +PV  D PL VIE
Sbjct: 107 QKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 156

This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

>sp|P0ABE0|BCCP_ECO57 Biotin carboxyl carrier protein of acetyl-CoA carboxylase OS=Escherichia coli O157:H7 GN=accB PE=3 SV=1

 Score =  106 bits (265), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/170 (39%), Positives = 97/170 (57%), Gaps = 16/170 (9%)

Query: 107 ISQVSSLIKLVDSRDIVELQLKQLDCELIIRKKEALPQPPAPASMAMMHSPSPPPVMPPT 166
           I ++  LI+LV+   I EL++   + E  +R   A P     AS  +M      P+M   
Sbjct: 3   IRKIKKLIELVEESGISELEIS--EGEESVRISRAAP----AASFPVMQQAYAAPMM--Q 54

Query: 167 QPAPAPTSSAPSASPAPPASPPSSTAGKSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVG 226
           QPA +  ++AP+  P+  A   +  +G  V+S       PM GTFYR+P+P    F++VG
Sbjct: 55  QPAQS-NAAAPATVPSMEAPAAAEISGHIVRS-------PMVGTFYRTPSPDAKAFIEVG 106

Query: 227 DRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276
            +V  G  LCI+EAMK+MN+IEAD+SGT+  I+ E  +PV  D PL VIE
Sbjct: 107 QKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 156

This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.

Escherichia coli O157:H7 (taxid: 83334)

>sp|P37799|BCCP_PSEAE Biotin carboxyl carrier protein of acetyl-CoA carboxylase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=accB PE=3 SV=1

 Score = 90.9 bits (224), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 40/73 (54%), Positives = 53/73 (72%)

Query: 203 LKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAED 262
           ++ PM GTFYR+ +P    FV+VG  V+KG +LCI+EAMK+MN IEA+ SGTI  I+ E+
Sbjct: 83  VRSPMVGTFYRAASPTSANFVEVGQSVKKGDILCIVEAMKMMNHIEAEVSGTIESILVEN 142

Query: 263 RKPVSVDTPLFVI 275
            +PV  D PLF I
Sbjct: 143 GQPVEFDQPLFTI 155

This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.

Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964)

>sp|Q1XDK5|BCCP_PORYE Biotin carboxyl carrier protein of acetyl-CoA carboxylase OS=Porphyra yezoensis GN=accB PE=3 SV=1

 Score = 90.9 bits (224), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 80/170 (47%), Gaps = 17/170 (10%)

Query: 107 ISQVSSLIKLVDSRDIVELQLKQLDCELIIRKKEALPQPPAPASMAMMHSPSPPPVMPPT 166
           I ++  L+  V  + I  L+LKQ   EL++ K                +      ++P  
Sbjct: 5   IKKLQDLLSSVQRKKIQTLKLKQGKFELLLNK---------------TYKKVNQEIIPSQ 49

Query: 167 QPAPAPTSSAPSASPAPPASPPSSTAGKSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVG 226
           + A    S  PS       +          ++    +  PM GTFY SPAPGE  FV+VG
Sbjct: 50  KSAVLQNS--PSTIIKSINNTKKIFCVNEDRTEYATIVSPMVGTFYHSPAPGEKIFVQVG 107

Query: 227 DRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276
           D V+  Q +CIIEAMKLMNEIEA+  G I+EI+ +D   V     L  +E
Sbjct: 108 DEVKFNQTVCIIEAMKLMNEIEAEIEGKIIEILVKDGDIVDCGQALMKVE 157

This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.

Porphyra yezoensis (taxid: 2788)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
155967399	282	biotin carboxyl carrier protein subunit	0.873	0.858	0.691	6e-83
307566894	285	acetyl-CoA carboxylase BCCP subunit [Jat	0.877	0.852	0.721	1e-82
432278299	281	biotin carboxyl carrier protein [Persea	0.916	0.903	0.672	5e-82
224144956	284	predicted protein [Populus trichocarpa]	0.938	0.915	0.675	6e-80
388490766	279	unknown [Lotus japonicus]	0.880	0.874	0.608	6e-74
255547536	315	Biotin carboxyl carrier protein subunit	0.996	0.876	0.588	4e-73
297735247	280	unnamed protein product [Vitis vinifera]	0.870	0.860	0.663	9e-71
359476751	286	PREDICTED: biotin carboxyl carrier prote	0.870	0.842	0.656	2e-70
15237339	280	biotin carboxyl carrier protein of acety	0.978	0.967	0.573	5e-70
1066348	285	acetyl-CoA carboxylase biotin-containing	0.978	0.950	0.573	5e-70

>gi|155967399|gb|ABU41516.1| biotin carboxyl carrier protein subunit [Gossypium hirsutum]

 Score =  313 bits (801), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 175/253 (69%), Positives = 195/253 (77%), Gaps = 11/253 (4%)

Query: 32  VFFRLSSSKPKLRFFAKGSQPSWKCATVVKSQLNEVAFDGSSNASATPA-------AETK 84
           V FR SS +  LRFF+K  Q      TVVK+QLNEVA DGSSNASA P        AE K
Sbjct: 34  VSFRFSSRR-NLRFFSKSLQHGQNSKTVVKAQLNEVAIDGSSNASAAPTIKSGAPTAEAK 92

Query: 85  DAKQPNEPSPSILASEESISEFISQVSSLIKLVDSRDIVELQLKQLDCELIIRKKEALPQ 144
           DAK  ++ SP  +A+EESI+EF++QVSSL+KLVDSR IVELQLKQLDCEL+IRKKEALPQ
Sbjct: 93  DAKTSSDVSPLAMATEESIAEFLNQVSSLVKLVDSRGIVELQLKQLDCELVIRKKEALPQ 152

Query: 145 PPAPASMAMMHSPSPPPVMPPTQPAPAPTSSAPSASPAPPASPPSSTAGKSVKSSLPPLK 204
           PP+ A + MM SPS  PVMPP    PA  +   SA+P P    PS  A KS KSSLPPLK
Sbjct: 153 PPSAAPVVMMQSPSQLPVMPPPPSVPALPAGQASAAPTPA---PSLAASKSAKSSLPPLK 209

Query: 205 CPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK 264
           CPMA TFYRSPAPGEPPFVKVGD+VQKGQVLCIIEAMKLMNEIEAD+SGT+VEI+AED K
Sbjct: 210 CPMARTFYRSPAPGEPPFVKVGDKVQKGQVLCIIEAMKLMNEIEADQSGTMVEILAEDGK 269

Query: 265 PVSVDTPLFVIEP 277
            VSVD PLFVIEP
Sbjct: 270 AVSVDMPLFVIEP 282

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307566894|gb|ADN52613.1| acetyl-CoA carboxylase BCCP subunit [Jatropha curcas]

 Score =  312 bits (799), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 184/255 (72%), Positives = 206/255 (80%), Gaps = 12/255 (4%)

Query: 32  VFFRLSSSKPKLRFFAKGSQPSWKCATVVKSQLNEVAFDGSSNASATP-------AAETK 84
           V FRLS  KPKLRFFAKG QP    +T+VK+QLNEVA DG SNA+A+P       + E K
Sbjct: 34  VSFRLSP-KPKLRFFAKGLQPGHNNSTLVKAQLNEVAVDGPSNAAASPPTRSGVPSQEKK 92

Query: 85  DAKQPNEPSPSILASEESISEFISQVSSLIKLVDSRDIVELQLKQLDCELIIRKKEALPQ 144
           DAK  NEPS   LA+EESISEFI+QV+SL+KLVDSRDIVELQLKQLDCE+IIRKKEALPQ
Sbjct: 93  DAKPSNEPSAPALATEESISEFITQVASLVKLVDSRDIVELQLKQLDCEVIIRKKEALPQ 152

Query: 145 PPAPASMAMMHSPS--PPPVMPPTQPAPAPTSSAPSASPAPPASPPSSTAGKSVKSSLPP 202
           PP+PA + MMHSPS  PPP+M      PA +S+APS + + P  PPS+ A K  KSS PP
Sbjct: 153 PPSPAPVVMMHSPSQSPPPLM--HSAPPAASSTAPSPASSAPPPPPSAPAVKPSKSSHPP 210

Query: 203 LKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAED 262
           LKCPMAGTFYRS APGEPPFVKVGD+VQKGQVLCIIEAMKLMNEIEAD+SGTIVEI+AED
Sbjct: 211 LKCPMAGTFYRSSAPGEPPFVKVGDKVQKGQVLCIIEAMKLMNEIEADQSGTIVEILAED 270

Query: 263 RKPVSVDTPLFVIEP 277
            K VSVD PLFVIEP
Sbjct: 271 GKSVSVDMPLFVIEP 285

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|432278299|gb|AGB07441.1| biotin carboxyl carrier protein [Persea americana]

 Score =  310 bits (794), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 179/266 (67%), Positives = 203/266 (76%), Gaps = 12/266 (4%)

Query: 20  SSSLVHYYRNGTVFFRLSSSKPKLRFFAKGSQPSWKCATVVKSQLNEVAFDGSSNASATP 79
           SSS  H+  +  + FRLSS K KL F  K S+ +W  + V ++QLNEV+ DGSSNAS +P
Sbjct: 20  SSSKRHHLHHSKLSFRLSS-KSKLHFSTKASRINWNRSVVTRAQLNEVSIDGSSNASTSP 78

Query: 80  -------AAETKDAKQPNEPSPSILASEESISEFISQVSSLIKLVDSRDIVELQLKQLDC 132
                  A E KDA   NEPS     SEE ISEFI+QV+SL+KLVDSRDIVELQLKQ +C
Sbjct: 79  SKNSEAPALEDKDA---NEPSLEAPVSEEYISEFINQVASLVKLVDSRDIVELQLKQHNC 135

Query: 133 ELIIRKKEALPQPPAPASMAMMHSPSPPPVMPPTQPAPAPTSSAPSASPAPPASPPSS-T 191
           E+IIRKKEAL QPP PA + MMHSPSPP  MP   P P P ++   ASPAP  S P++ T
Sbjct: 136 EVIIRKKEALAQPPGPAPVVMMHSPSPPAAMPSHYPPPQPATAPAPASPAPSTSAPTALT 195

Query: 192 AGKSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADR 251
           A KS KSSLPPLKCPMAGTFYRS  PGEPPFVKVGD+V+KGQVLCIIEAMKLMNEIEAD+
Sbjct: 196 AAKSPKSSLPPLKCPMAGTFYRSTGPGEPPFVKVGDKVKKGQVLCIIEAMKLMNEIEADQ 255

Query: 252 SGTIVEIIAEDRKPVSVDTPLFVIEP 277
           SGTIVEI+AED KPVSVDTPLFVIEP
Sbjct: 256 SGTIVEILAEDAKPVSVDTPLFVIEP 281

Source: Persea americana

Species: Persea americana

Genus: Persea

Family: Lauraceae

Order: Laurales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144956|ref|XP_002325474.1| predicted protein [Populus trichocarpa] gi|222862349|gb|EEE99855.1| predicted protein [Populus trichocarpa]

 Score =  303 bits (776), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 183/271 (67%), Positives = 209/271 (77%), Gaps = 11/271 (4%)

Query: 17  SKNSSSLVHY--YRNGTVFFRLSSSKPKLRFFAKGSQPSWKCATVVKSQLNEVAFDGSSN 74
           +K+++ L HY  +R  T  FRLS  KPKLRF AKG QP+     +VK+QLNEVA DGSSN
Sbjct: 15  TKSAAILPHYNTHRLSTQSFRLSQ-KPKLRFLAKGLQPTRNGTYLVKAQLNEVAVDGSSN 73

Query: 75  ASAT-------PAAETKDAKQPNEPSPSILASEESISEFISQVSSLIKLVDSRDIVELQL 127
           A+A+       P  E KDAK  NEPSP  LA+EESISEFISQVSSL+KLVDSRDIVELQL
Sbjct: 74  AAASTLAKSEVPLQEAKDAKPSNEPSPPSLATEESISEFISQVSSLVKLVDSRDIVELQL 133

Query: 128 KQLDCELIIRKKEALPQPPAPASMAMMHS-PSPPPVMPPTQPAPAPTSSAPSASPAPPAS 186
           KQLDCEL+IRKKEALP PP  + + MMHS P PPP + P     A  ++  +AS   P++
Sbjct: 134 KQLDCELLIRKKEALPLPPYHSPVVMMHSHPPPPPPVMPAATPAASAAAPAAASSPSPSA 193

Query: 187 PPSSTAGKSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNE 246
              S   KSVKSSLPP KCPMAGTFYRSPAPGEP FVKVGD+VQKGQV+CIIEAMKLMNE
Sbjct: 194 ISPSPPSKSVKSSLPPFKCPMAGTFYRSPAPGEPSFVKVGDKVQKGQVVCIIEAMKLMNE 253

Query: 247 IEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277
           IEAD++GTIVEI+AED KPVSVDTPLFVIEP
Sbjct: 254 IEADQTGTIVEILAEDGKPVSVDTPLFVIEP 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388490766|gb|AFK33449.1| unknown [Lotus japonicus]

 Score =  283 bits (724), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 160/263 (60%), Positives = 192/263 (73%), Gaps = 19/263 (7%)

Query: 24  VHYYRNGTVFFRLSSSKPKLRFFAKGSQPSWKCAT-VVKSQLNEVAFDGSSNASATPAAE 82
           V +  N  + FRLS     LRFF KG  PS       VK+QLNEVA DGSSNA+ T  ++
Sbjct: 27  VSHSSNSNLSFRLSPKPNTLRFFTKGCPPSHVVLCPRVKAQLNEVAHDGSSNAAPTNKSD 86

Query: 83  TKDAKQPNEPSP----SILASEESISEFISQVSSLIKLVDSRDIVELQLKQLDCELIIRK 138
           + D + PN+PSP    S+ A++ESIS+F++QV+SL+KLVDSRDIVEL LKQLDCE+ IRK
Sbjct: 87  S-DVEPPNKPSPEPSSSVFATQESISDFLTQVASLVKLVDSRDIVELTLKQLDCEVTIRK 145

Query: 139 KEALPQPPAPASMAMMHSPSPPPVMPP----TQPAPAPTSSAPSASPAPPASPPSSTAGK 194
           +EA+PQ  +    A+ +SP P P MPP    + PAPA  +S PS        P +S A K
Sbjct: 146 REAMPQLQSALQPAVFYSP-PSPTMPPVVTASNPAPAVAASTPS--------PSTSLAIK 196

Query: 195 SVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGT 254
           S KSS PPLK PMAGTFYRSPAPGEP FVKVGD+V+KG VLCIIEAMKLMNEIEAD+SGT
Sbjct: 197 SAKSSHPPLKSPMAGTFYRSPAPGEPAFVKVGDKVKKGHVLCIIEAMKLMNEIEADQSGT 256

Query: 255 IVEIIAEDRKPVSVDTPLFVIEP 277
           +V++IAED K VSVDTPLFVIEP
Sbjct: 257 VVDVIAEDGKSVSVDTPLFVIEP 279

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547536|ref|XP_002514825.1| Biotin carboxyl carrier protein subunit of of Het-ACCase (BCCP1) [Ricinus communis] gi|223545876|gb|EEF47379.1| Biotin carboxyl carrier protein subunit of of Het-ACCase (BCCP1) [Ricinus communis]

 Score =  280 bits (717), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 186/316 (58%), Positives = 211/316 (66%), Gaps = 40/316 (12%)

Query: 1   MASSSLATGTPSASAFSKNSSSLVHY--YRNGTVFFRLSSSKPKLRFFAKGSQPSWKCAT 58
           MASS   T + SASA  K + +L HY  Y    V F LS  KP  RFF++G  P    ++
Sbjct: 1   MASSLSTTPSASASAVVKTTPNLSHYSSYTLSRVSFPLSP-KPNFRFFSQGQHPGRNSSS 59

Query: 59  VVKSQLNEVAF---------------------------DGSSNASAT-------PAAETK 84
            VK+QLNEV F                           DGSSNA+A+       P  + K
Sbjct: 60  SVKAQLNEVRFFQWFSLEDLFSNFLDMLLGSSVVKVAVDGSSNAAASTSTKSEVPLQDPK 119

Query: 85  DAKQPNEPSPSILASEESISEFISQVSSLIKLVDSRDIVELQLKQLDCELIIRKKEALPQ 144
           DA   NE S   L SEESISEFISQV+SL+KLVDSRDIVELQLKQLDCELIIRKKEALPQ
Sbjct: 120 DANPSNETSSPALVSEESISEFISQVASLVKLVDSRDIVELQLKQLDCELIIRKKEALPQ 179

Query: 145 PPAPASMAMMHSPSPPPVMPPTQPAPAPTSSAPSASPAPPASPPSSTAGKSV---KSSLP 201
           PP+PA + MMH PSP P      P  +P +S+ ++SPA  A PPSS +  +    KSS P
Sbjct: 180 PPSPAPVVMMHPPSPTPPPLMPMPPTSPAASSTASSPASSAPPPSSPSPPATKSPKSSHP 239

Query: 202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAE 261
           PLK PMAGTFYRSPAPGEP FVKVGD+VQKGQVLCIIEAMKLMNEIEAD+SGTIVE + E
Sbjct: 240 PLKSPMAGTFYRSPAPGEPHFVKVGDKVQKGQVLCIIEAMKLMNEIEADQSGTIVEALLE 299

Query: 262 DRKPVSVDTPLFVIEP 277
           D KPVSVDTPLFVIEP
Sbjct: 300 DGKPVSVDTPLFVIEP 315

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735247|emb|CBI17609.3| unnamed protein product [Vitis vinifera]

 Score =  272 bits (696), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 164/247 (66%), Positives = 186/247 (75%), Gaps = 6/247 (2%)

Query: 32  VFFRLSSSKPKLRFFAKGSQPSWKCATVVKSQLNEVAFDGSSN-ASATPAAETKDAKQPN 90
           VFF     KP LRF AKG Q     + VVK+QLNEV  +  +   S  PA E KD K  N
Sbjct: 39  VFF---PRKPGLRFSAKGLQSRLIRSPVVKAQLNEVVDESPTPPKSDAPAVEAKDVKSSN 95

Query: 91  EPSPSILASEESISEFISQVSSLIKLVDSRDIVELQLKQLDCELIIRKKEALPQPPAPAS 150
           +PSP+ LASEESISEFI+QV+SL+KLVDSRDIVELQ+KQLDCELIIRKKEALPQPP+ A 
Sbjct: 96  KPSPAALASEESISEFITQVASLVKLVDSRDIVELQMKQLDCELIIRKKEALPQPPSAAP 155

Query: 151 MAMMHSPSPPPVMPPTQPAPAPTSSAPSASPAPPASPPSSTAGKSVKSSLPPLKCPMAGT 210
           + MMHSP P  V P   PA  P  SAP++S     + PS+ A KS  SS P LK PMAGT
Sbjct: 156 VVMMHSPPPAAVAPVGPPAAVPAPSAPASSAP--TTVPSAPAAKSTNSSHPRLKSPMAGT 213

Query: 211 FYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDT 270
           FYRSP P EPPFVKVGD+VQKG+VLCIIEAMKLMNEIEAD+SGTIVEI+A+D K VS+DT
Sbjct: 214 FYRSPGPNEPPFVKVGDKVQKGKVLCIIEAMKLMNEIEADQSGTIVEILADDGKSVSIDT 273

Query: 271 PLFVIEP 277
           PLF IEP
Sbjct: 274 PLFAIEP 280

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476751|ref|XP_002276955.2| PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic [Vitis vinifera]

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 166/253 (65%), Positives = 187/253 (73%), Gaps = 12/253 (4%)

Query: 32  VFFRLSSSKPKLRFFAKGSQPSWKCATVVKSQLNE--VAFDGSSNA-----SATPAAETK 84
           VFF     KP LRF AKG Q     + VVK+QLNE  VAF     +     S  PA E K
Sbjct: 39  VFF---PRKPGLRFSAKGLQSRLIRSPVVKAQLNEPSVAFKVVDESPTPPKSDAPAVEAK 95

Query: 85  DAKQPNEPSPSILASEESISEFISQVSSLIKLVDSRDIVELQLKQLDCELIIRKKEALPQ 144
           D K  N+PSP+ LASEESISEFI+QV+SL+KLVDSRDIVELQ+KQLDCELIIRKKEALPQ
Sbjct: 96  DVKSSNKPSPAALASEESISEFITQVASLVKLVDSRDIVELQMKQLDCELIIRKKEALPQ 155

Query: 145 PPAPASMAMMHSPSPPPVMPPTQPAPAPTSSAPSASPAPPASPPSSTAGKSVKSSLPPLK 204
           PP+ A + MMHSP P  V P   PA  P  SAP++S     + PS+ A KS  SS P LK
Sbjct: 156 PPSAAPVVMMHSPPPAAVAPVGPPAAVPAPSAPASSAP--TTVPSAPAAKSTNSSHPRLK 213

Query: 205 CPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK 264
            PMAGTFYRSP P EPPFVKVGD+VQKG+VLCIIEAMKLMNEIEAD+SGTIVEI+A+D K
Sbjct: 214 SPMAGTFYRSPGPNEPPFVKVGDKVQKGKVLCIIEAMKLMNEIEADQSGTIVEILADDGK 273

Query: 265 PVSVDTPLFVIEP 277
            VS+DTPLF IEP
Sbjct: 274 SVSIDTPLFAIEP 286

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237339|ref|NP_197143.1| biotin carboxyl carrier protein of acetyl-CoA carboxylase 1 [Arabidopsis thaliana] gi|17380471|sp|Q42533.2|BCCP1_ARATH RecName: Full=Biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic; Short=AtBCCP1; Short=BCCP-1; Flags: Precursor gi|8886873|gb|AAF80594.1|AF236873_1 biotin carboxyl carrier protein isoform 1 [Arabidopsis thaliana] gi|9759121|dbj|BAB09606.1| biotin carboxyl carrier protein of acetyl-CoA carboxylase precursor [Arabidopsis thaliana] gi|15451074|gb|AAK96808.1| biotin carboxyl carrier protein of acetyl-CoA carboxylase precursor [Arabidopsis thaliana] gi|18377418|gb|AAL66875.1| biotin carboxyl carrier protein of acetyl-CoA carboxylase precursor [Arabidopsis thaliana] gi|21593442|gb|AAM65409.1| biotin carboxyl carrier protein of acetyl-CoA carboxylase precursor (BCCP) [Arabidopsis thaliana] gi|332004903|gb|AED92286.1| biotin carboxyl carrier protein of acetyl-CoA carboxylase 1 [Arabidopsis thaliana]

 Score =  270 bits (690), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 164/286 (57%), Positives = 207/286 (72%), Gaps = 15/286 (5%)

Query: 1   MASSSLATGTPSASA----FSKNSSSLVHYYRNGTVFFRLSSSKPKLRFFAKGSQPSWKC 56
           MASSS +  +P+A+A     ++ SS      R+  V FRLS+ KPKLRF +K S+ S+  
Sbjct: 1   MASSSFSVTSPAAAASVYAVTQTSSHFPIQNRSRRVSFRLSA-KPKLRFLSKPSRSSY-- 57

Query: 57  ATVVKSQLNEVAFDGSSNASATPAAETKDAKQPN---EPSPSI--LASEESISEFISQVS 111
             VVK+Q N+V+   SSNA+      + + K+ N   E S S   LA+EESISEF++QV+
Sbjct: 58  -PVVKAQSNKVSTGASSNAAKVDGPSSAEGKEKNSLKESSASSPELATEESISEFLTQVT 116

Query: 112 SLIKLVDSRDIVELQLKQLDCELIIRKKEALPQPPAPASMAMMHSPSPPPVMPPTQPAPA 171
           +L+KLVDSRDIVELQLKQLDCEL+IRKKEALPQP APAS  MM  P+ P      Q AP 
Sbjct: 117 TLVKLVDSRDIVELQLKQLDCELVIRKKEALPQPQAPASYVMMQQPNQPSY--AQQMAPP 174

Query: 172 PTSSAPSASPAPPASPPSSTAGKSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQK 231
              +A + +P+ PAS P  +     KSSLP +K PMAGTFYRSPAPGEPPF+KVGD+VQK
Sbjct: 175 AAPAAAAPAPSTPASLPPPSPPTPAKSSLPTVKSPMAGTFYRSPAPGEPPFIKVGDKVQK 234

Query: 232 GQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277
           GQVLCI+EAMKLMNEIE+D +GT+V+I+AED KPVS+DTPLFV++P
Sbjct: 235 GQVLCIVEAMKLMNEIESDHTGTVVDIVAEDGKPVSLDTPLFVVQP 280

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1066348|gb|AAC49114.1| acetyl-CoA carboxylase biotin-containing subunit [Arabidopsis thaliana]

 Score =  270 bits (690), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 164/286 (57%), Positives = 207/286 (72%), Gaps = 15/286 (5%)

Query: 1   MASSSLATGTPSASA----FSKNSSSLVHYYRNGTVFFRLSSSKPKLRFFAKGSQPSWKC 56
           MASSS +  +P+A+A     ++ SS      R+  V FRLS+ KPKLRF +K S+ S+  
Sbjct: 1   MASSSFSVTSPAAAASVYAVTQTSSHFPIQNRSRRVSFRLSA-KPKLRFLSKPSRSSY-- 57

Query: 57  ATVVKSQLNEVAFDGSSNASATPAAETKDAKQPN---EPSPSI--LASEESISEFISQVS 111
             VVK+Q N+V+   SSNA+      + + K+ N   E S S   LA+EESISEF++QV+
Sbjct: 58  -PVVKAQSNKVSTGASSNAAKVDGPSSAEGKEKNSLKESSASSPELATEESISEFLTQVT 116

Query: 112 SLIKLVDSRDIVELQLKQLDCELIIRKKEALPQPPAPASMAMMHSPSPPPVMPPTQPAPA 171
           +L+KLVDSRDIVELQLKQLDCEL+IRKKEALPQP APAS  MM  P+ P      Q AP 
Sbjct: 117 TLVKLVDSRDIVELQLKQLDCELVIRKKEALPQPQAPASYVMMQQPNQPSYA--QQMAPP 174

Query: 172 PTSSAPSASPAPPASPPSSTAGKSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQK 231
              +A + +P+ PAS P  +     KSSLP +K PMAGTFYRSPAPGEPPF+KVGD+VQK
Sbjct: 175 AAPAAAAPAPSTPASLPPPSPPTPAKSSLPTVKSPMAGTFYRSPAPGEPPFIKVGDKVQK 234

Query: 232 GQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277
           GQVLCI+EAMKLMNEIE+D +GT+V+I+AED KPVS+DTPLFV++P
Sbjct: 235 GQVLCIVEAMKLMNEIESDHTGTVVDIVAEDGKPVSLDTPLFVVQP 280

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
TAIR|locus:2171307	280	CAC1 "chloroplastic acetylcoen	0.292	0.289	0.802	1.4e-62
TAIR|locus:2180927	255	BCCP2 "biotin carboxyl carrier	0.288	0.313	0.837	2.3e-48
TIGR_CMR|GSU_2020	158	GSU_2020 "acetyl-CoA carboxyla	0.259	0.455	0.597	6.9e-23
TIGR_CMR|CHY_1999	617	CHY_1999 "oxaloacetate decarbo	0.256	0.115	0.619	1.1e-22
UNIPROTKB|P0ABD8	156	accB [Escherichia coli K-12 (t	0.267	0.474	0.540	2.5e-21
UNIPROTKB|Q9KV61	196	VC_0296 "Acetyl-CoA carboxylas	0.256	0.362	0.563	8.4e-21
TIGR_CMR|VC_0296	196	VC_0296 "acetyl-CoA carboxylas	0.256	0.362	0.563	8.4e-21
TIGR_CMR|CPS_0947	148	CPS_0947 "acetyl-CoA carboxyla	0.267	0.5	0.513	2.8e-20
TIGR_CMR|BA_4409	164	BA_4409 "acetyl-CoA carboxylas	0.299	0.506	0.476	3.6e-20
TIGR_CMR|CJE_1483	151	CJE_1483 "acetyl-CoA carboxyla	0.299	0.549	0.542	9.2e-20

TAIR|locus:2171307 CAC1 "chloroplastic acetylcoenzyme A carboxylase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 1.4e-62, Sum P(2) = 1.4e-62
 Identities = 65/81 (80%), Positives = 77/81 (95%)

Query:   197 KSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIV 256
             KSSLP +K PMAGTFYRSPAPGEPPF+KVGD+VQKGQVLCI+EAMKLMNEIE+D +GT+V
Sbjct:   200 KSSLPTVKSPMAGTFYRSPAPGEPPFIKVGDKVQKGQVLCIVEAMKLMNEIESDHTGTVV 259

Query:   257 EIIAEDRKPVSVDTPLFVIEP 277
             +I+AED KPVS+DTPLFV++P
Sbjct:   260 DIVAEDGKPVSLDTPLFVVQP 280

GO:0003989 "acetyl-CoA carboxylase activity" evidence=IEA;IDA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA;ISS;TAS

GO:0009317 "acetyl-CoA carboxylase complex" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;ISS;IDA

GO:0009374 "biotin binding" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048653 "anther development" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2180927 BCCP2 "biotin carboxyl carrier protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 2.3e-48, Sum P(2) = 2.3e-48
 Identities = 67/80 (83%), Positives = 75/80 (93%)

Query:   198 SSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVE 257
             SS PPLK PMAGTFYRSP PGEPPFVKVGD+VQKGQ++CIIEAMKLMNEIEA++SGTI+E
Sbjct:   176 SSHPPLKSPMAGTFYRSPGPGEPPFVKVGDKVQKGQIVCIIEAMKLMNEIEAEKSGTIME 235

Query:   258 IIAEDRKPVSVDTPLFVIEP 277
             ++AED KPVSVDTPLFVI P
Sbjct:   236 LLAEDGKPVSVDTPLFVIAP 255

GO:0003989 "acetyl-CoA carboxylase activity" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA;ISS

GO:0009317 "acetyl-CoA carboxylase complex" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009374 "biotin binding" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

TIGR_CMR|GSU_2020 GSU_2020 "acetyl-CoA carboxylase, biotin carboxyl carrier protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 228 (85.3 bits), Expect = 6.9e-23, Sum P(2) = 6.9e-23
 Identities = 43/72 (59%), Positives = 55/72 (76%)

Query:   206 PMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKP 265
             P+ GTFYR+PAP   P+V+VG  V+KGQVLCI+EAMKLMNEIEA+    IV+I  E+ +P
Sbjct:    86 PIVGTFYRAPAPDAAPYVEVGQVVEKGQVLCIVEAMKLMNEIEAEFRCKIVQICKENAQP 145

Query:   266 VSVDTPLFVIEP 277
             V    PLF++EP
Sbjct:   146 VEFGEPLFIVEP 157

GO:0003989 "acetyl-CoA carboxylase activity" evidence=ISS

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0009317 "acetyl-CoA carboxylase complex" evidence=ISS

TIGR_CMR|CHY_1999 CHY_1999 "oxaloacetate decarboxylase, alpha subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 235 (87.8 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
 Identities = 44/71 (61%), Positives = 56/71 (78%)

Query:   206 PMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKP 265
             PM GTFYR+PAPG PPFV+VG +++ G VLCIIEAMKLMNEIE++ SG IVEI+ E+ + 
Sbjct:   546 PMVGTFYRAPAPGAPPFVEVGQKIKPGDVLCIIEAMKLMNEIESEISGEIVEILVENGEM 605

Query:   266 VSVDTPLFVIE 276
             V    PLF ++
Sbjct:   606 VEYGQPLFKVK 616

GO:0006814 "sodium ion transport" evidence=ISS

GO:0008948 "oxaloacetate decarboxylase activity" evidence=ISS

GO:0015081 "sodium ion transmembrane transporter activity" evidence=ISS

UNIPROTKB|P0ABD8 accB [Escherichia coli K-12 (taxid:83333)]

 Score = 223 (83.6 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
 Identities = 40/74 (54%), Positives = 54/74 (72%)

Query:   203 LKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAED 262
             ++ PM GTFYR+P+P    F++VG +V  G  LCI+EAMK+MN+IEAD+SGT+  I+ E 
Sbjct:    83 VRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVES 142

Query:   263 RKPVSVDTPLFVIE 276
              +PV  D PL VIE
Sbjct:   143 GQPVEFDEPLVVIE 156

GO:0006633 "fatty acid biosynthetic process" evidence=IEA;IGI;IDA;IMP

GO:0003989 "acetyl-CoA carboxylase activity" evidence=IEA;IMP

GO:0005737 "cytoplasm" evidence=IC

GO:0009317 "acetyl-CoA carboxylase complex" evidence=IEA;IDA

GO:0009374 "biotin binding" evidence=IDA

UNIPROTKB|Q9KV61 VC_0296 "Acetyl-CoA carboxylase, biotin carboxyl carrier protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 216 (81.1 bits), Expect = 8.4e-21, Sum P(2) = 8.4e-21
 Identities = 40/71 (56%), Positives = 50/71 (70%)

Query:   206 PMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKP 265
             PM GTFYRSP+P    F++VG  V  G  LCI+EAMK+MN+IEAD+SG +  I+ ED + 
Sbjct:   126 PMVGTFYRSPSPDAKAFIEVGQSVSVGDTLCIVEAMKMMNQIEADKSGVVTAILVEDGQT 185

Query:   266 VSVDTPLFVIE 276
             V  D PL VIE
Sbjct:   186 VEFDQPLVVIE 196

GO:0003989 "acetyl-CoA carboxylase activity" evidence=ISS

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0009317 "acetyl-CoA carboxylase complex" evidence=ISS

TIGR_CMR|VC_0296 VC_0296 "acetyl-CoA carboxylase, biotin carboxyl carrier protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 216 (81.1 bits), Expect = 8.4e-21, Sum P(2) = 8.4e-21
 Identities = 40/71 (56%), Positives = 50/71 (70%)

Query:   206 PMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKP 265
             PM GTFYRSP+P    F++VG  V  G  LCI+EAMK+MN+IEAD+SG +  I+ ED + 
Sbjct:   126 PMVGTFYRSPSPDAKAFIEVGQSVSVGDTLCIVEAMKMMNQIEADKSGVVTAILVEDGQT 185

Query:   266 VSVDTPLFVIE 276
             V  D PL VIE
Sbjct:   186 VEFDQPLVVIE 196

GO:0003989 "acetyl-CoA carboxylase activity" evidence=ISS

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0009317 "acetyl-CoA carboxylase complex" evidence=ISS

TIGR_CMR|CPS_0947 CPS_0947 "acetyl-CoA carboxylase, biotin carboxyl carrier protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 214 (80.4 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
 Identities = 38/74 (51%), Positives = 52/74 (70%)

Query:   203 LKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAED 262
             ++ PM GT+Y S +P  P F +VG  V  G  LCI+EAMK+MN+IEAD+SG I EI+A++
Sbjct:    75 VRSPMVGTYYASASPDSPAFAEVGKHVNAGDTLCIVEAMKMMNQIEADKSGVIKEILAQN 134

Query:   263 RKPVSVDTPLFVIE 276
                +  D PLF+IE
Sbjct:   135 EDAIEFDQPLFIIE 148

GO:0003989 "acetyl-CoA carboxylase activity" evidence=ISS

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0009317 "acetyl-CoA carboxylase complex" evidence=ISS

TIGR_CMR|BA_4409 BA_4409 "acetyl-CoA carboxylase, biotin carboxyl carrier protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 199 (75.1 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
 Identities = 41/86 (47%), Positives = 58/86 (67%)

Query:   194 KSVKS-SLPPLKCPMAGTFYRSPA--PGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEAD 250
             K+V++ +L  +  PM GTFY S +  P  PP+V VGDRV K  ++CI+EAMKL NEI+AD
Sbjct:    78 KAVQNENLHKITSPMVGTFYSSSSSSPDTPPYVSVGDRVSKDSIVCIVEAMKLFNEIDAD 137

Query:   251 RSGTIVEIIAEDRKPVSVDTPLFVIE 276
               G IVEI+  + + V    PLF+++
Sbjct:   138 VDGEIVEILVNNGQLVEYGQPLFLVK 163

GO:0003989 "acetyl-CoA carboxylase activity" evidence=ISS

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0009317 "acetyl-CoA carboxylase complex" evidence=ISS

TIGR_CMR|CJE_1483 CJE_1483 "acetyl-CoA carboxylase, biotin carboxyl carrier protein" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 45/83 (54%), Positives = 58/83 (69%)

Query:   194 KSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSG 253
             +SVKS+ P +  PM GTFY++P+PG  PFVKVG  V+KG  + IIEAMK+MNEIEA+   
Sbjct:    67 QSVKSNKPSINSPMVGTFYQAPSPGAAPFVKVGSTVKKGDTIAIIEAMKIMNEIEAEFDC 126

Query:   254 TIVEIIAEDRKPVSVDTPLFVIE 276
              I EI+  D +PV    PLF +E
Sbjct:   127 RIAEILVADGQPVEFGMPLFAVE 149

GO:0003989 "acetyl-CoA carboxylase activity" evidence=ISS

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0009317 "acetyl-CoA carboxylase complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q42533	BCCP1_ARATH	No assigned EC number	0.5734	0.9783	0.9678	yes	no
Q42783	BCCP_SOYBN	No assigned EC number	0.6209	0.8592	0.9083	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.3	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	grail3.0095003402	hypothetical protein (284 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pm.C_LG_VI0248	hypothetical protein (528 aa)	•		•			•	•		0.974
	grail3.0164004802	hypothetical protein (526 aa)	•		•			•	•		0.974
	estExt_fgenesh4_pg.C_LG_IX0832	[acyl-carrier protein] S-malonyltransferase (EC-2.3.1.39) (371 aa)	•			•		•	•		0.928
	estExt_fgenesh4_pm.C_LG_II0424	hypothetical protein (2276 aa)						•	•		0.914
	eugene3.00050761	hypothetical protein (2264 aa)						•	•		0.913
	gw1.XIV.1152.1	acetyl-CoA carboxylase (587 aa)	•		•			•	•		0.901
	gw1.XIX.2128.1	hypothetical protein (435 aa)				•		•			0.900
	estExt_Genewise1_v1.C_410201	hypothetical protein (414 aa)				•		•			0.900
	gw1.V.3049.1	2-isopropylmalate synthase (EC-2.3.3.13) (545 aa)						•			0.899
	gw1.III.1824.1	hypothetical protein (176 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	277
PLN02983	274	PLN02983, PLN02983, biotin carboxyl carrier protei	1e-101
PRK06302	155	PRK06302, PRK06302, acetyl-CoA carboxylase biotin	3e-51
TIGR00531	156	TIGR00531, BCCP, acetyl-CoA carboxylase, biotin ca	8e-39
COG0511	140	COG0511, AccB, Biotin carboxyl carrier protein [Li	4e-33
PRK09282	592	PRK09282, PRK09282, pyruvate carboxylase subunit B	2e-27
cd06850	67	cd06850, biotinyl_domain, The biotinyl-domain or b	2e-24
pfam00364	73	pfam00364, Biotin_lipoyl, Biotin-requiring enzyme	2e-23
PRK07051	80	PRK07051, PRK07051, hypothetical protein; Validate	8e-20
PRK14040	593	PRK14040, PRK14040, oxaloacetate decarboxylase; Pr	6e-14
cd06663	73	cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_	1e-13
PRK06549	130	PRK06549, PRK06549, acetyl-CoA carboxylase biotin	4e-13
cd06849	74	cd06849, lipoyl_domain, Lipoyl domain of the dihyd	5e-12
PRK05641	153	PRK05641, PRK05641, putative acetyl-CoA carboxylas	2e-11
COG4770	645	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase	1e-10
TIGR02712	1201	TIGR02712, urea_carbox, urea carboxylase	2e-09
PRK11856	411	PRK11856, PRK11856, branched-chain alpha-keto acid	3e-08
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	5e-08
COG1038	1149	COG1038, PycA, Pyruvate carboxylase [Energy produc	7e-08
PRK12999	1146	PRK12999, PRK12999, pyruvate carboxylase; Reviewed	8e-08
TIGR01108	582	TIGR01108, oadA, oxaloacetate decarboxylase alpha	1e-07
TIGR01235	1143	TIGR01235, pyruv_carbox, pyruvate carboxylase	2e-07
COG0508	404	COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogena	2e-07
PRK08225	70	PRK08225, PRK08225, acetyl-CoA carboxylase biotin	6e-07
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	7e-06
PRK14875	371	PRK14875, PRK14875, acetoin dehydrogenase E2 subun	1e-05
PRK05704	407	PRK05704, PRK05704, dihydrolipoamide succinyltrans	2e-04
PHA03201	318	PHA03201, PHA03201, uracil DNA glycosylase; Provis	2e-04
TIGR01347	403	TIGR01347, sucB, 2-oxoglutarate dehydrogenase comp	2e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	4e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	4e-04
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	4e-04
PRK14042	596	PRK14042, PRK14042, pyruvate carboxylase subunit B	4e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	5e-04
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	5e-04
COG5373	931	COG5373, COG5373, Predicted membrane protein [Func	6e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	7e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	9e-04
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	9e-04
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	0.001
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.001
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.001
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	0.002
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	0.002
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	0.002
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	0.002
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.003
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.003
cd06848	96	cd06848, GCS_H, Glycine cleavage H-protein	0.003
pfam01597	122	pfam01597, GCV_H, Glycine cleavage H-protein	0.003
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	0.004

>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase

 Score =  297 bits (761), Expect = e-101
 Identities = 171/281 (60%), Positives = 195/281 (69%), Gaps = 15/281 (5%)

Query: 4   SSLATGTPSASAFSKNSSSLVHYYRNGTVFFRLSSSKPKLRFFAKGSQPSWKCATVVKSQ 63
           +SL+      +A + N  S     R     FRL   KP + F +KG  P       VK+Q
Sbjct: 2   ASLSVPCAKTAAAAANVGS-----RLSRSSFRLQP-KPNISFPSKGPNPKRSAVPKVKAQ 55

Query: 64  LNEVAFDGSSNA-------SATPAAETKDAKQPNEPSPSILASEESISEFISQVSSLIKL 116
           LNEVA DGSSN+       S    +E KD    N  S   L  EESISEF++QVSSL+KL
Sbjct: 56  LNEVAVDGSSNSAKSDDPKSEVAPSEPKDEPPSNSSSKPNLPDEESISEFMTQVSSLVKL 115

Query: 117 VDSRDIVELQLKQLDCELIIRKKEALPQPPAPASMAMMHSPSPPPVMPPTQPAPAPTSSA 176
           VDSRDIVELQLKQLDCEL+IRKKEALPQPP PA + MM  P P  + P + PA  P  SA
Sbjct: 116 VDSRDIVELQLKQLDCELVIRKKEALPQPPPPAPVVMMQPPPPHAMPPASPPAAQPAPSA 175

Query: 177 PSASPAPPASPPSSTAGKSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLC 236
           P++SP P  +P S    K+ KSS PPLK PMAGTFYRSPAPGEPPFVKVGD+VQKGQV+C
Sbjct: 176 PASSPPP--TPASPPPAKAPKSSHPPLKSPMAGTFYRSPAPGEPPFVKVGDKVQKGQVVC 233

Query: 237 IIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277
           IIEAMKLMNEIEAD+SGTIVEI+AED KPVSVDTPLFVIEP
Sbjct: 234 IIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIEP 274

Length = 274

>gnl|CDD|235777 PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score =  164 bits (418), Expect = 3e-51
 Identities = 72/170 (42%), Positives = 97/170 (57%), Gaps = 17/170 (10%)

Query: 107 ISQVSSLIKLVDSRDIVELQLKQLDCELIIRKKEALPQPPAPASMAMMHSPSPPPVMPPT 166
           I ++  LI+LVD   I E ++K+ +  + I +  A P  P                  P 
Sbjct: 3   IRKIKKLIELVDESGISEFEIKEGEESVRISRAAAAPVAPVAQ----------QAAAAPV 52

Query: 167 QPAPAPTSSAPSASPAPPASPPSSTAGKSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVG 226
             APA  ++A +A  A PA+  +   G  V S       PM GTFYR+P+P  PPFV+VG
Sbjct: 53  AAAPAAAAAAAAAPAAAPAAAAAEAEGHVVTS-------PMVGTFYRAPSPDAPPFVEVG 105

Query: 227 DRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276
           D V++GQ LCIIEAMK+MNEIEAD+SG + EI+ E+ +PV    PLFVIE
Sbjct: 106 DTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQPVEFGQPLFVIE 155

Length = 155

>gnl|CDD|188060 TIGR00531, BCCP, acetyl-CoA carboxylase, biotin carboxyl carrier protein

 Score =  133 bits (335), Expect = 8e-39
 Identities = 69/170 (40%), Positives = 101/170 (59%), Gaps = 16/170 (9%)

Query: 107 ISQVSSLIKLVDSRDIVELQLKQLDCELIIRKKEALPQPPAPASMAMMHSPSPPPVMPPT 166
           I ++  LIKL++   I EL+LK+ + E+ + K  A  +  A     +  + +P P   P 
Sbjct: 3   IREIKELIKLIEESGITELELKEEEFEVRLSKAAAAAKKSA-----VQQAAAPVPAQVPA 57

Query: 167 QPAPAPTSSAPSASPAPPASPPSSTAGKSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVG 226
            P+      AP+ +   PA   +   G  V+S       PM GTFYR+P+P   PFV+VG
Sbjct: 58  APSA----QAPAPAVCAPAPAKADKKGHFVRS-------PMVGTFYRAPSPDAKPFVEVG 106

Query: 227 DRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276
           D+V+KGQ++CI+EAMKLMNEIEA+ +G +VEI+ E+ +PV    PL VIE
Sbjct: 107 DKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE 156

This model is designed to identify biotin carboxyl carrier protein as a peptide of acetyl-CoA carboxylase. Scoring below the trusted cutoff is a related protein encoded in a region associated with polyketide synthesis in the prokaryote Saccharopolyspora hirsuta, and a reported chloroplast-encoded biotin carboxyl carrier protein that may be highly derived from the last common ancestral sequence. Scoring below the noise cutoff are biotin carboxyl carrier domains of other enzymes such as pyruvate carboxylase.The gene name is accB or fabE [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 156

>gnl|CDD|223585 COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism]

 Score =  117 bits (296), Expect = 4e-33
 Identities = 61/165 (36%), Positives = 83/165 (50%), Gaps = 28/165 (16%)

Query: 113 LIKLVDSRDIVELQLKQLDCELIIRKKEALPQPPAPASMAMMHSPSPPPVMPPTQPAPAP 172
           LIKLV   D  E ++K  + E+ + +K           +  + +P+P     P+  A  P
Sbjct: 4   LIKLVVESDGTEFEVKVEEGEVRLSRKTP--------VVQDVPAPAPIEASSPSAAAAQP 55

Query: 173 TSSAPSASPAPPASPPSSTAGKSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKG 232
            +SAP+ +PA  A       G  V S       PM GT Y+       PFV+VGD V+ G
Sbjct: 56  AASAPAPAPAAAAG------GTQVTS-------PMVGTVYK-------PFVEVGDTVKAG 95

Query: 233 QVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277
           Q L IIEAMK+ NEIEA   G + EI+ ++  PV    PL VIEP
Sbjct: 96  QTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIEP 140

Length = 140

>gnl|CDD|236449 PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated

 Score =  110 bits (278), Expect = 2e-27
 Identities = 33/122 (27%), Positives = 49/122 (40%), Gaps = 15/122 (12%)

Query: 156 SPSPPPVMPPTQPAPAPTSSAPSASPAPPASPPSSTAGKSVKSSLPPLKCPMAGTFYRSP 215
           +    P        P      P         P +S  G         +  PM GT  +  
Sbjct: 486 AEGKRPFYLRVDGMPEEVVVEPLKEIVVGGRPRASAPG--------AVTSPMPGTVVKV- 536

Query: 216 APGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 275
                  VK GD+V+ G  + ++EAMK+ NEI+A   GT+ EI+ ++   V+    L  I
Sbjct: 537 ------KVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEI 590

Query: 276 EP 277
           EP
Sbjct: 591 EP 592

Length = 592

>gnl|CDD|133459 cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

 Score = 92.9 bits (232), Expect = 2e-24
 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 7/73 (9%)

Query: 203 LKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAED 262
           +  PM GT  +         VK GD+V+ GQ L ++EAMK+ NE+ A  +G + EI+ ++
Sbjct: 2   VTAPMPGTVVK-------VLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKE 54

Query: 263 RKPVSVDTPLFVI 275
              V     L VI
Sbjct: 55  GDQVEAGQLLVVI 67

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine. Length = 67

>gnl|CDD|201182 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme

 Score = 90.4 bits (225), Expect = 2e-23
 Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAE 261
            +K PM G   +         VKVGD+V+ GQVLC +EAMK+  EI A  +G + EI+ +
Sbjct: 2   EIKSPMIGESVKEG--TAEWLVKVGDKVKAGQVLCEVEAMKMEMEIPAPVAGVVKEILVK 59

Query: 262 DRKPVSVDTPLFVI 275
           +   V V  PL  I
Sbjct: 60  EGDTVEVGDPLAKI 73

This family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the HMM does not currently recognise the Glycine cleavage system H proteins. Length = 73

>gnl|CDD|180811 PRK07051, PRK07051, hypothetical protein; Validated

 Score = 81.2 bits (201), Expect = 8e-20
 Identities = 34/74 (45%), Positives = 47/74 (63%)

Query: 203 LKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAED 262
           +  P+ GTFYR P+P  PP+V+VGD V  G V+ +IE MK   E+EA+ +G +VE + ED
Sbjct: 6   IVSPLPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVED 65

Query: 263 RKPVSVDTPLFVIE 276
            +PV     L  IE
Sbjct: 66  GEPVEAGQVLARIE 79

Length = 80

>gnl|CDD|237592 PRK14040, PRK14040, oxaloacetate decarboxylase; Provisional

 Score = 71.1 bits (175), Expect = 6e-14
 Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 14/103 (13%)

Query: 173 TSSAPSASPAPPASPPSSTAGKSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKG 232
            ++  +A  A  A+ P++ AG+ V +       P+AG  ++         V  G  V +G
Sbjct: 504 PAAPAAAPAAAAAAAPAAAAGEPVTA-------PLAGNIFKV-------IVTEGQTVAEG 549

Query: 233 QVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 275
            VL I+EAMK+  EI A ++GT+  I  ++   V+V   L  +
Sbjct: 550 DVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTL 592

Length = 593

>gnl|CDD|133456 cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

 Score = 64.4 bits (157), Expect = 1e-13
 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 7/68 (10%)

Query: 208 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVS 267
            GT  +          KVGD+V+KG VL  IEAMK  +++EA +SGT+ +++ ++   V 
Sbjct: 13  DGTVVKW-------LKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVE 65

Query: 268 VDTPLFVI 275
            DTPL  I
Sbjct: 66  GDTPLVKI 73

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue. Length = 73

>gnl|CDD|235826 PRK06549, PRK06549, acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 64.4 bits (157), Expect = 4e-13
 Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 15/120 (12%)

Query: 156 SPSPPPVMPPTQPAPAPTSSAPSASPAPPASPPSSTAGKSVKSSLPPLKCPMAGTFYRSP 215
           + +  P  P + P P PT ++P      P  P ++    ++ S       PM GT  +  
Sbjct: 25  AQAAAPAQPASTPVPVPTEASPQVEAQAPQ-PAAAAGADAMPS-------PMPGTILKV- 75

Query: 216 APGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 275
                  V VGD+V + Q L I+EAMK+ NEI A  +GT+  I     + V+    L  I
Sbjct: 76  ------LVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITI 129

Length = 130

>gnl|CDD|133458 cd06849, lipoyl_domain, Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

 Score = 59.7 bits (146), Expect = 5e-12
 Identities = 20/54 (37%), Positives = 30/54 (55%)

Query: 222 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 275
            VK GD V++G VL  +E  K   E+EA  +G + +I+ E+   V V   + VI
Sbjct: 21  LVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue. Length = 74

>gnl|CDD|235540 PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 60.6 bits (147), Expect = 2e-11
 Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 16/119 (13%)

Query: 157 PSPPPVMPPTQPAPAPTSSAPSA---SPAPPASPPSSTAGKSVKSSLPPLKCPMAGTFYR 213
                      PAPAP  + PSA         +P  ++AG++V ++      PM G   R
Sbjct: 44  DLSAVQEQVPTPAPAPAPAVPSAPTPVAPAAPAPAPASAGENVVTA------PMPGKILR 97

Query: 214 SPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPL 272
                    V+ G +V+ GQ L I+EAMK+ NEI A + G + +I+ ++   V    PL
Sbjct: 98  I-------LVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPL 149

Length = 153

>gnl|CDD|227111 COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 7/75 (9%)

Query: 203 LKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAED 262
           L  PM GT   S A      VK G  V  G +L ++EAMK+ N + A R G + ++   +
Sbjct: 578 LLAPMPGTV-VSVA------VKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAE 630

Query: 263 RKPVSVDTPLFVIEP 277
              V+V T L   E 
Sbjct: 631 GDQVAVGTVLVEFEE 645

Length = 645

>gnl|CDD|233980 TIGR02712, urea_carbox, urea carboxylase

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 13/103 (12%)

Query: 174  SSAPSASPAPPASPPSSTAGKSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQ 233
            +         P        G     S        AG F++         V+VGDRV+ GQ
Sbjct: 1112 ADLAEEVTEAPEEEADLPEGAEQVES------EYAGNFWK-------VLVEVGDRVEAGQ 1158

Query: 234  VLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276
             L I+EAMK+   + A  +G + +I+ +    V     + V+E
Sbjct: 1159 PLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea [Central intermediary metabolism, Nitrogen metabolism]. Length = 1201

>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

 Score = 53.6 bits (130), Expect = 3e-08
 Identities = 21/55 (38%), Positives = 33/55 (60%)

Query: 222 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276
            VKVGD V++GQ L  +E  K   EI +  +GT+ +++ E+   V V + + VIE
Sbjct: 23  LVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIE 77

Length = 411

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 53.3 bits (129), Expect = 5e-08
 Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 10/117 (8%)

Query: 164 PPTQPAPAPTSSAPSASPAPPASPPSSTAGKSVKSSLPPLKCPMAGTFYRSPAPGEPP-- 221
               PA A   +A +A+   PA+   + A  +    +  +K P  G         E    
Sbjct: 83  AAAAPAAAAAPAAAAAAAPAPAAAAPAAAAAAAGGGVVEVKVPDIGEI------TEVEVI 136

Query: 222 --FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276
              VKVGD V++ Q L  +E  K   EI +  +G + EI  +    VSV + L VIE
Sbjct: 137 EWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIE 193

Length = 547

>gnl|CDD|223968 COG1038, PycA, Pyruvate carboxylase [Energy production and conversion]

 Score = 53.1 bits (128), Expect = 7e-08
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 7/71 (9%)

Query: 206  PMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKP 265
            PM G             VK GD+V+KG VL +IEAMK+   I A   GT+ E++ +D   
Sbjct: 1085 PMPGVVVEV-------KVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQ 1137

Query: 266  VSVDTPLFVIE 276
            +     L V+E
Sbjct: 1138 IDGGDLLVVVE 1148

Length = 1149

>gnl|CDD|237263 PRK12999, PRK12999, pyruvate carboxylase; Reviewed

 Score = 52.8 bits (128), Expect = 8e-08
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 7/72 (9%)

Query: 206  PMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKP 265
            PM G+            VK GD V+ G  L +IEAMK+   I A   GT+  ++ +    
Sbjct: 1082 PMPGSVVT-------VLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQ 1134

Query: 266  VSVDTPLFVIEP 277
            V     L  +EP
Sbjct: 1135 VEAGDLLVELEP 1146

Length = 1146

>gnl|CDD|233273 TIGR01108, oadA, oxaloacetate decarboxylase alpha subunit

 Score = 51.7 bits (124), Expect = 1e-07
 Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 15/100 (15%)

Query: 173 TSSAPSASPAPPASPPSSTAGKSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKG 232
           T+SAP+ +     +  +            P+  P+AG+  +         V  G  V +G
Sbjct: 498 TASAPANTSGGTVAAKAGAGT--------PVTAPIAGSIVKV-------KVSEGQTVAEG 542

Query: 233 QVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPL 272
           +VL I+EAMK+  EI+A  +GT+ EI+ +    VSV   L
Sbjct: 543 EVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL 582

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane [Transport and binding proteins, Cations and iron carrying compounds, Energy metabolism, Other]. Length = 582

>gnl|CDD|130302 TIGR01235, pyruv_carbox, pyruvate carboxylase

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 7/71 (9%)

Query: 206  PMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKP 265
            PM G             V  G  V KG  L ++EAMK+   I+A + GTI E++ +  + 
Sbjct: 1080 PMPGVIIEV-------KVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQ 1132

Query: 266  VSVDTPLFVIE 276
            +     L V+E
Sbjct: 1133 IDAKDLLLVLE 1143

This enzyme plays a role in gluconeogensis but not glycolysis [Energy metabolism, Glycolysis/gluconeogenesis]. Length = 1143

>gnl|CDD|223582 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 19/56 (33%), Positives = 30/56 (53%)

Query: 222 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277
             KVGD+V++G VL  +E  K   E+ A  +G + +I+ E+   V V   +  IE 
Sbjct: 23  LKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIEE 78

Length = 404

>gnl|CDD|181304 PRK08225, PRK08225, acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 45.5 bits (108), Expect = 6e-07
 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 7/52 (13%)

Query: 207 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEI 258
           MAG  ++         VKVGD V++GQ + I+E+MK+   I A+ +GT+ +I
Sbjct: 8   MAGNVWKI-------VVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKI 52

Length = 70

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 24/55 (43%), Positives = 33/55 (60%)

Query: 223 VKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277
            KVGD V++ +V+CIIE  K+  +I A  SG I +I AE+   V V  PL  I+ 
Sbjct: 66  KKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEIDT 120

Length = 418

>gnl|CDD|184875 PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 19/56 (33%), Positives = 32/56 (57%)

Query: 222 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277
            V+ GD V+KG  L  +E  K+ NE+EA  +GT+   +A++ + + V   L V+  
Sbjct: 23  LVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVAD 78

Length = 371

>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase; Validated

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 20/56 (35%), Positives = 32/56 (57%)

Query: 222 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277
             K GD V++ +VL  IE  K++ E+ A  +G + EI+AE+   V+V   L  I+ 
Sbjct: 23  HKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDE 78

Length = 407

>gnl|CDD|165468 PHA03201, PHA03201, uracil DNA glycosylase; Provisional

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 27/78 (34%), Positives = 30/78 (38%), Gaps = 8/78 (10%)

Query: 151 MAMMHSPSPPPVMPPTQPAPAPTSS-------APSASPAPPASPPSSTAGKSVKSSLPPL 203
           M    S SP P   P+ P P P  S        P + P P A PP   A         P 
Sbjct: 1   MKRARSRSPSPPRRPSPPRPTPPRSPDASPEETPPSPPGPGAEPPPGRAAGPAAPRRRPR 60

Query: 204 KCPMAGTFYRSPAPGEPP 221
            CP AG  + S AP  PP
Sbjct: 61  GCP-AGVTFSSSAPPRPP 77

Length = 318

>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 15/53 (28%), Positives = 29/53 (54%)

Query: 224 KVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276
           KVGD V++ + +  IE  K++ E+ +   G + EI+ ++   V     L ++E
Sbjct: 23  KVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILE 75

This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase [Energy metabolism, TCA cycle]. Length = 403

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 13/54 (24%), Positives = 19/54 (35%)

Query: 141 ALPQPPAPASMAMMHSPSPPPVMPPTQPAPAPTSSAPSASPAPPASPPSSTAGK 194
           A       A+ A     +P P  P      AP   A +A+ A   + P + A  
Sbjct: 52  AAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAA 105

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 41.4 bits (98), Expect = 4e-04
 Identities = 12/60 (20%), Positives = 21/60 (35%)

Query: 143 PQPPAPASMAMMHSPSPPPVMPPTQPAPAPTSSAPSASPAPPASPPSSTAGKSVKSSLPP 202
               A A+ A   +P+      P    PA  + A    PA  A+  ++ A     ++   
Sbjct: 48  AAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAA 107

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 41.4 bits (98), Expect = 4e-04
 Identities = 13/60 (21%), Positives = 20/60 (33%)

Query: 143 PQPPAPASMAMMHSPSPPPVMPPTQPAPAPTSSAPSASPAPPASPPSSTAGKSVKSSLPP 202
               A AS       +  P  P   P  A   +AP    A  A+  +  A  +  ++  P
Sbjct: 49  AAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAP 108

Length = 1228

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 18/62 (29%), Positives = 21/62 (33%), Gaps = 2/62 (3%)

Query: 143 PQPPAPASMAMMHSPSPPPVM-PPTQPAPAPTSSAPSASPAPPASPPSSTAGKSVKSSLP 201
            QP AP S A   + +PP V   P    P    S    +  P           S  SSL 
Sbjct: 409 AQPSAPQS-ATQPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLG 467

Query: 202 PL 203
           P 
Sbjct: 468 PS 469

Length = 614

>gnl|CDD|172536 PRK14042, PRK14042, pyruvate carboxylase subunit B; Provisional

 Score = 41.2 bits (96), Expect = 4e-04
 Identities = 20/54 (37%), Positives = 31/54 (57%)

Query: 223 VKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276
           V  GD V+ GQ + +IEAMK+  EI+A  +G + EI+ +    V+    L  +E
Sbjct: 541 VSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVE 594

Length = 596

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 16/84 (19%), Positives = 27/84 (32%)

Query: 138 KKEALPQPPAPASMAMMHSPSPPPVMPPTQPAPAPTSSAPSASPAPPASPPSSTAGKSVK 197
                    APA  A   + +  P  PP    PAP ++  +A+PA   +   +    +  
Sbjct: 391 AAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPA 450

Query: 198 SSLPPLKCPMAGTFYRSPAPGEPP 221
                    +A     +P P    
Sbjct: 451 PPAQAAPETVAIPVRVAPEPAVAS 474

Length = 618

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 40.8 bits (95), Expect = 5e-04
 Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 20/134 (14%)

Query: 143 PQPPAPASMAMMHSPSPPPVMPPTQPAPAPTSSAPSASPAPPASPPSSTAGKSVKSSLPP 202
           P P AP        P   P      PAP P + AP+     PA+P +  +G++ +  +P 
Sbjct: 86  PAPAAPE-------PEAAPEPEAPAPAPTPAAEAPA-----PAAPQAGGSGEATEVKMPE 133

Query: 203 L-KCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAE 261
           L +    GT              VGD V+  + L  +   K+  EI +  +GT++EI A 
Sbjct: 134 LGESVTEGTVTSW-------LKAVGDTVEVDEPLLEVSTDKVDTEIPSPVAGTLLEIRAP 186

Query: 262 DRKPVSVDTPLFVI 275
           +   V V T L +I
Sbjct: 187 EDDTVEVGTVLAII 200

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown]

 Score = 41.0 bits (96), Expect = 6e-04
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 140 EALPQPPAPASMAMMHSP--SPPPVMPPTQPAPAPTSSAPSASPAPPASPP 188
           EA    P PA+   + SP   PP    P Q   AP +  PSA PAP A+P 
Sbjct: 58  EAAEAAPLPAAAESIASPEVPPPVPPAPAQEGEAPAAEQPSAVPAPSAAPA 108

Length = 931

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 40.6 bits (96), Expect = 7e-04
 Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 3/77 (3%)

Query: 137 RKKEALPQPPAPASMAMMHSPSPPPVMPPTQPAPAPTSSAPSASPAPPASPPSST---AG 193
               A     APA+ A       PP        P P ++A +A+        ++    A 
Sbjct: 51  AAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAA 110

Query: 194 KSVKSSLPPLKCPMAGT 210
            +V+  + PL+   A  
Sbjct: 111 AAVEDEVTPLRGAAAAV 127

Length = 1228

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.1 bits (94), Expect = 9e-04
 Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 4/93 (4%)

Query: 139 KEALPQPPAPASMAMMHSPSPPPVMPPTQPAPAPTSSAPSASPAPPASPPSSTAGKSVKS 198
           K+   +P A A  A   +P       P   A    +++  A+P   A P    A  +   
Sbjct: 378 KKTPARPEAAAPAA---APVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAP 434

Query: 199 SLPPLKCPMAGTFYR-SPAPGEPPFVKVGDRVQ 230
           +  P   P A       PA   P  V +  RV 
Sbjct: 435 AAAPAAAPAAVALAPAPPAQAAPETVAIPVRVA 467

Length = 618

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.2 bits (95), Expect = 9e-04
 Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 10/74 (13%)

Query: 140 EALPQPPAPASMAMMHSPSPPPVMPPTQPAPAPTS----------SAPSASPAPPASPPS 189
                   P + A+   P+  P   P  P P  TS           A  A+ A  + P +
Sbjct: 386 APTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAA 445

Query: 190 STAGKSVKSSLPPL 203
           ++  + V S+L  L
Sbjct: 446 ASRARPVNSALERL 459

Length = 647

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.8 bits (94), Expect = 0.001
 Identities = 11/53 (20%), Positives = 20/53 (37%)

Query: 141 ALPQPPAPASMAMMHSPSPPPVMPPTQPAPAPTSSAPSASPAPPASPPSSTAG 193
            +P   A  + +   + +P   + P Q    P   A +   AP    P +T+ 
Sbjct: 369 EVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQ 421

Length = 647

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 39.9 bits (93), Expect = 0.001
 Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 10/91 (10%)

Query: 141  ALPQPP-APASMAMMHSPSPPPVMPPTQPAPAPTSSAP-SASPAPPASPPSSTAGKSVKS 198
             L +P  A  S +    PSP     P     AP ++ P +ASPA P  PP+S    +   
Sbjct: 2782 RLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPP 2841

Query: 199  SLPPLKCPMA--------GTFYRSPAPGEPP 221
               P    +         G   R P    P 
Sbjct: 2842 PPGPPPPSLPLGGSVAPGGDVRRRPPSRSPA 2872

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 18/79 (22%), Positives = 26/79 (32%)

Query: 143 PQPPAPASMAMMHSPSPPPVMPPTQPAPAPTSSAPSASPAPPASPPSSTAGKSVKSSLPP 202
           P   AP++ A   + +P P       A AP  +A       PA  P+  +      +   
Sbjct: 394 PAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGA 453

Query: 203 LKCPMAGTFYRSPAPGEPP 221
              P A      PAP    
Sbjct: 454 PSPPPAAAPSAQPAPAPAA 472

Length = 824

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.1 bits (92), Expect = 0.002
 Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 7/63 (11%)

Query: 137 RKKEALPQPPAP-------ASMAMMHSPSPPPVMPPTQPAPAPTSSAPSASPAPPASPPS 189
                LP+P  P       AS     +P+     P     P P +SAP  +PA P    +
Sbjct: 360 HPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETT 419

Query: 190 STA 192
           S  
Sbjct: 420 SQL 422

Length = 647

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 24/67 (35%), Positives = 34/67 (50%)

Query: 143 PQPPAPASMAMMHSPSPPPVMPPTQPAPAPTSSAPSASPAPPASPPSSTAGKSVKSSLPP 202
           P PP P++ A   +P+ PP  PP    PAP    P+A+P PP + P++     V  + PP
Sbjct: 43  PPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNAPP 102

Query: 203 LKCPMAG 209
              P  G
Sbjct: 103 PPAPEPG 109

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 27/103 (26%), Positives = 37/103 (35%), Gaps = 9/103 (8%)

Query: 133 ELIIRKKEALPQPPAPASMAMMHSPSPPPVMPP----TQPAPAPTSSAPSASPAP---PA 185
                     P P APA+     +P  PP  P      +PAPAP   A +A PA    PA
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPA 441

Query: 186 SPPSSTAGKSVKSSLPPLKCPMAGTF--YRSPAPGEPPFVKVG 226
           +  S+        +    K P  G      SP       +++G
Sbjct: 442 AAASAGDRWRAFVAFVKGKKPALGASLEQGSPLGVSAGLLEIG 484

Length = 576

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 223 VKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEI-IAEDRKPVSVDTPLFVI 275
            K GD+V+ G V+  IE  K   E+EA   GT+ +I + E  + V V+TP+ V+
Sbjct: 24  KKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVL 77

Length = 464

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 38.7 bits (91), Expect = 0.003
 Identities = 12/63 (19%), Positives = 23/63 (36%)

Query: 140 EALPQPPAPASMAMMHSPSPPPVMPPTQPAPAPTSSAPSASPAPPASPPSSTAGKSVKSS 199
            A     A ++ A   +   P    P  PA A  ++ P  + A  A+   +    +  ++
Sbjct: 47  AAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAA 106

Query: 200 LPP 202
            P 
Sbjct: 107 APA 109

Length = 1228

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 38.8 bits (90), Expect = 0.003
 Identities = 26/85 (30%), Positives = 31/85 (36%), Gaps = 9/85 (10%)

Query: 143  PQPPAPASMAMMHSPSPP--------PVMPPTQP-APAPTSSAPSASPAPPASPPSSTAG 193
            P+P  PA  +    P  P        PV     P  PAP S  P  + AP   PPS +  
Sbjct: 2575 PRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPA 2634

Query: 194  KSVKSSLPPLKCPMAGTFYRSPAPG 218
             +     PP   P        PAPG
Sbjct: 2635 ANEPDPHPPPTVPPPERPRDDPAPG 2659

Length = 3151

>gnl|CDD|133457 cd06848, GCS_H, Glycine cleavage H-protein

 Score = 36.0 bits (84), Expect = 0.003
 Identities = 11/37 (29%), Positives = 22/37 (59%)

Query: 222 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEI 258
             +VG  V+KG     +E++K  +++ +  SG +VE+
Sbjct: 36  LPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEV 72

Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue. Length = 96

>gnl|CDD|201881 pfam01597, GCV_H, Glycine cleavage H-protein

 Score = 36.5 bits (85), Expect = 0.003
 Identities = 14/35 (40%), Positives = 24/35 (68%)

Query: 224 KVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEI 258
           +VG  V+KG+ L  +E++K  +E+ A  SG +VE+
Sbjct: 40  EVGTEVKKGESLGAVESVKAASEVYAPVSGEVVEV 74

This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyzes the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. Length = 122

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 32/115 (27%), Positives = 43/115 (37%), Gaps = 22/115 (19%)

Query: 168 PAPAPTSSAPSASPAPPASPPSSTAGKSVKSSLPPLKCPMAGTFYRSPAPGEPP------ 221
            A A  + A     A PA+ P++ A K V                  P  G         
Sbjct: 80  AADAAPAQAEEKKEAAPAAAPAAAAAKDV----------------HVPDIGSDEVEVTEI 123

Query: 222 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276
            VKVGD V+  Q L  +E  K   E+ A  +GT+ EI       VS  + + V E
Sbjct: 124 LVKVGDTVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVSTGSLIMVFE 178

Length = 633

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	277
PLN02983	274	biotin carboxyl carrier protein of acetyl-CoA carb	100.0
TIGR00531	156	BCCP acetyl-CoA carboxylase, biotin carboxyl carri	99.97
PRK06302	155	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.97
COG0511	140	AccB Biotin carboxyl carrier protein [Lipid metabo	99.95
PRK05889	71	putative acetyl-CoA carboxylase biotin carboxyl ca	99.69
PF00364	74	Biotin_lipoyl: Biotin-requiring enzyme; InterPro:	99.67
PRK07051	80	hypothetical protein; Validated	99.66
PRK08225	70	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.65
PRK06748	83	hypothetical protein; Validated	99.63
PRK06549	130	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.62
PRK05641	153	putative acetyl-CoA carboxylase biotin carboxyl ca	99.59
cd06850	67	biotinyl_domain The biotinyl-domain or biotin carb	99.54
PRK14042	596	pyruvate carboxylase subunit B; Provisional	99.44
PRK09282	592	pyruvate carboxylase subunit B; Validated	99.37
PRK14875	371	acetoin dehydrogenase E2 subunit dihydrolipoyllysi	99.35
cd06663	73	Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar	99.35
PRK14040	593	oxaloacetate decarboxylase; Provisional	99.33
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	99.33
COG4770	645	Acetyl/propionyl-CoA carboxylase, alpha subunit [L	99.32
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	99.3
TIGR02712	1201	urea_carbox urea carboxylase. Members of this fami	99.3
PLN02226	463	2-oxoglutarate dehydrogenase E2 component	99.3
PRK12999	1146	pyruvate carboxylase; Reviewed	99.29
PTZ00144	418	dihydrolipoamide succinyltransferase; Provisional	99.26
COG1038	1149	PycA Pyruvate carboxylase [Energy production and c	99.23
COG0508	404	AceF Pyruvate/2-oxoglutarate dehydrogenase complex	99.17
PRK05704	407	dihydrolipoamide succinyltransferase; Validated	99.17
TIGR01347	403	sucB 2-oxoglutarate dehydrogenase complex dihydrol	99.09
TIGR02927	590	SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo	99.04
PRK11854	633	aceF pyruvate dehydrogenase dihydrolipoyltransacet	99.04
PRK11854	633	aceF pyruvate dehydrogenase dihydrolipoyltransacet	99.01
TIGR01348	546	PDHac_trf_long pyruvate dehydrogenase complex dihy	98.97
KOG0369	1176	consensus Pyruvate carboxylase [Energy production	98.96
PRK11855	547	dihydrolipoamide acetyltransferase; Reviewed	98.94
KOG0559	457	consensus Dihydrolipoamide succinyltransferase (2-	98.93
cd06849	74	lipoyl_domain Lipoyl domain of the dihydrolipoyl a	98.92
PLN02528	416	2-oxoisovalerate dehydrogenase E2 component	98.92
TIGR01348	546	PDHac_trf_long pyruvate dehydrogenase complex dihy	98.88
PRK11855	547	dihydrolipoamide acetyltransferase; Reviewed	98.82
PRK11856	411	branched-chain alpha-keto acid dehydrogenase subun	98.81
TIGR01349	435	PDHac_trf_mito pyruvate dehydrogenase complex dihy	98.77
KOG0238	670	consensus 3-Methylcrotonyl-CoA carboxylase, biotin	98.76
PLN02744	539	dihydrolipoyllysine-residue acetyltransferase comp	98.76
PRK11892	464	pyruvate dehydrogenase subunit beta; Provisional	98.67
TIGR02927	590	SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo	98.65
KOG0557	470	consensus Dihydrolipoamide acetyltransferase [Ener	98.59
PRK09783	409	copper/silver efflux system membrane fusion protei	98.5
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	98.49
PRK01202	127	glycine cleavage system protein H; Provisional	98.45
PRK10476	346	multidrug resistance protein MdtN; Provisional	98.4
TIGR01730	322	RND_mfp RND family efflux transporter, MFP subunit	98.3
PRK10559	310	p-hydroxybenzoic acid efflux subunit AaeA; Provisi	98.28
PRK15136	390	multidrug efflux system protein EmrA; Provisional	98.22
PRK09578	385	periplasmic multidrug efflux lipoprotein precursor	98.21
PRK03598	331	putative efflux pump membrane fusion protein; Prov	98.18
PRK15030	397	multidrug efflux system transporter AcrA; Provisio	98.17
cd06848	96	GCS_H Glycine cleavage H-protein. Glycine cleavage	98.13
PRK09859	385	multidrug efflux system protein MdtE; Provisional	98.13
KOG0368	2196	consensus Acetyl-CoA carboxylase [Lipid transport	98.12
TIGR03309	256	matur_yqeB selenium-dependent molybdenum hydroxyla	98.09
TIGR03077	110	not_gcvH glycine cleavage protein H-like protein,	98.03
KOG0558	474	consensus Dihydrolipoamide transacylase (alpha-ket	98.02
TIGR00527	127	gcvH glycine cleavage system H protein. The genome	98.01
PRK11578	370	macrolide transporter subunit MacA; Provisional	97.99
PRK11556	415	multidrug efflux system subunit MdtA; Provisional	97.96
PRK13380	144	glycine cleavage system protein H; Provisional	97.96
PRK00624	114	glycine cleavage system protein H; Provisional	97.88
PF12700	328	HlyD_2: HlyD family secretion protein; PDB: 3LNN_B	97.83
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	97.82
PF13533	50	Biotin_lipoyl_2: Biotin-lipoyl like	97.75
PF13533	50	Biotin_lipoyl_2: Biotin-lipoyl like	97.74
cd06253	298	M14_ASTE_ASPA_like_3 A functionally uncharacterize	97.55
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	97.54
cd06251	287	M14_ASTE_ASPA_like_1 A functionally uncharacterize	97.4
cd06252	316	M14_ASTE_ASPA_like_2 A functionally uncharacterize	97.39
PRK12784	84	hypothetical protein; Provisional	97.36
cd06250	359	M14_PaAOTO_like An uncharacterized subgroup of the	97.31
TIGR02994	325	ectoine_eutE ectoine utilization protein EutE. Mem	97.27
PRK05889	71	putative acetyl-CoA carboxylase biotin carboxyl ca	97.24
PF13375	101	RnfC_N: RnfC Barrel sandwich hybrid domain	97.17
PF01597	122	GCV_H: Glycine cleavage H-protein; InterPro: IPR00	97.13
COG1566	352	EmrA Multidrug resistance efflux pump [Defense mec	97.09
COG0509	131	GcvH Glycine cleavage system H protein (lipoate-bi	97.05
cd06254	288	M14_ASTE_ASPA_like_4 A functionally uncharacterize	97.01
PRK06748	83	hypothetical protein; Validated	96.82
PRK08225	70	acetyl-CoA carboxylase biotin carboxyl carrier pro	96.81
cd06850	67	biotinyl_domain The biotinyl-domain or biotin carb	96.54
COG3608	331	Predicted deacylase [General function prediction o	96.36
cd06255	293	M14_ASTE_ASPA_like_5 A functionally uncharacterize	96.17
COG0511	140	AccB Biotin carboxyl carrier protein [Lipid metabo	95.97
PRK06549	130	acetyl-CoA carboxylase biotin carboxyl carrier pro	95.88
PRK07051	80	hypothetical protein; Validated	95.87
PRK09439	169	PTS system glucose-specific transporter subunit; P	95.83
PRK10476	346	multidrug resistance protein MdtN; Provisional	95.68
PF00364	74	Biotin_lipoyl: Biotin-requiring enzyme; InterPro:	95.66
cd00210	124	PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose s	95.64
TIGR00830	121	PTBA PTS system, glucose subfamily, IIA component.	95.55
PRK05641	153	putative acetyl-CoA carboxylase biotin carboxyl ca	95.51
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	95.44
PF04952	292	AstE_AspA: Succinylglutamate desuccinylase / Aspar	95.43
PF13437	105	HlyD_3: HlyD family secretion protein	95.31
PF00529	305	HlyD: HlyD family secretion protein the correspond	95.25
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	95.22
PF00358	132	PTS_EIIA_1: phosphoenolpyruvate-dependent sugar ph	95.15
PRK09859	385	multidrug efflux system protein MdtE; Provisional	95.08
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	95.05
TIGR01936	447	nqrA NADH:ubiquinone oxidoreductase, Na(+)-translo	95.01
PRK15136	390	multidrug efflux system protein EmrA; Provisional	94.98
PRK09578	385	periplasmic multidrug efflux lipoprotein precursor	94.95
PRK11556	415	multidrug efflux system subunit MdtA; Provisional	94.95
PF05896	257	NQRA: Na(+)-translocating NADH-quinone reductase s	94.94
PRK11578	370	macrolide transporter subunit MacA; Provisional	94.92
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	94.86
PRK03598	331	putative efflux pump membrane fusion protein; Prov	94.84
PF09891	150	DUF2118: Uncharacterized protein conserved in arch	94.73
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	94.68
PRK15030	397	multidrug efflux system transporter AcrA; Provisio	94.62
TIGR01945	435	rnfC electron transport complex, RnfABCDGE type, C	94.48
PRK05352	448	Na(+)-translocating NADH-quinone reductase subunit	94.47
COG2190	156	NagE Phosphotransferase system IIA components [Car	94.47
PRK10559	310	p-hydroxybenzoic acid efflux subunit AaeA; Provisi	94.22
TIGR00999	265	8a0102 Membrane Fusion Protein cluster 2 (function	94.06
KOG3373	172	consensus Glycine cleavage system H protein (lipoa	94.06
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	93.95
COG1566	352	EmrA Multidrug resistance efflux pump [Defense mec	93.92
PRK05035	695	electron transport complex protein RnfC; Provision	93.58
COG4656	529	RnfC Predicted NADH:ubiquinone oxidoreductase, sub	93.36
PRK10255	648	PTS system N-acetyl glucosamine specific transport	92.94
PRK09824	627	PTS system beta-glucoside-specific transporter sub	92.87
COG1726	447	NqrA Na+-transporting NADH:ubiquinone oxidoreducta	92.72
COG0845	372	AcrA Membrane-fusion protein [Cell envelope biogen	92.67
PRK09783	409	copper/silver efflux system membrane fusion protei	92.67
TIGR01995	610	PTS-II-ABC-beta PTS system, beta-glucoside-specifi	92.58
PRK05305	206	phosphatidylserine decarboxylase; Provisional	92.5
TIGR00164	189	PS_decarb_rel phosphatidylserine decarboxylase pre	92.23
TIGR00531	156	BCCP acetyl-CoA carboxylase, biotin carboxyl carri	92.06
PRK14042	596	pyruvate carboxylase subunit B; Provisional	91.8
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	91.73
PRK06302	155	acetyl-CoA carboxylase biotin carboxyl carrier pro	91.71
PRK14875	371	acetoin dehydrogenase E2 subunit dihydrolipoyllysi	91.6
PLN02983	274	biotin carboxyl carrier protein of acetyl-CoA carb	90.79
cd06663	73	Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar	90.54
PRK14040	593	oxaloacetate decarboxylase; Provisional	90.41
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	90.22
TIGR01995	610	PTS-II-ABC-beta PTS system, beta-glucoside-specifi	90.11
PLN02226	463	2-oxoglutarate dehydrogenase E2 component	89.81
PF07831	75	PYNP_C: Pyrimidine nucleoside phosphorylase C-term	89.7
PRK09824	627	PTS system beta-glucoside-specific transporter sub	89.33
PRK09282	592	pyruvate carboxylase subunit B; Validated	89.31
PF02666	202	PS_Dcarbxylase: Phosphatidylserine decarboxylase;	88.89
COG4770	645	Acetyl/propionyl-CoA carboxylase, alpha subunit [L	88.33
COG0845	372	AcrA Membrane-fusion protein [Cell envelope biogen	88.23
COG4072	161	Uncharacterized protein conserved in archaea [Func	88.12
PTZ00144	418	dihydrolipoamide succinyltransferase; Provisional	87.98
PF06898	385	YqfD: Putative stage IV sporulation protein YqfD;	87.49
COG2190	156	NagE Phosphotransferase system IIA components [Car	87.01
COG1038	1149	PycA Pyruvate carboxylase [Energy production and c	87.0
cd06849	74	lipoyl_domain Lipoyl domain of the dihydrolipoyl a	86.97
TIGR02712	1201	urea_carbox urea carboxylase. Members of this fami	86.66
PRK10255	648	PTS system N-acetyl glucosamine specific transport	86.52
PF00358	132	PTS_EIIA_1: phosphoenolpyruvate-dependent sugar ph	86.22
PRK09439	169	PTS system glucose-specific transporter subunit; P	85.6
TIGR01730	322	RND_mfp RND family efflux transporter, MFP subunit	85.41
PRK05704	407	dihydrolipoamide succinyltransferase; Validated	85.05
PRK14844	2836	bifunctional DNA-directed RNA polymerase subunit b	85.0
TIGR00999	265	8a0102 Membrane Fusion Protein cluster 2 (function	84.41
PRK12999	1146	pyruvate carboxylase; Reviewed	83.94
TIGR01347	403	sucB 2-oxoglutarate dehydrogenase complex dihydrol	82.87
COG0508	404	AceF Pyruvate/2-oxoglutarate dehydrogenase complex	82.68
TIGR02876	382	spore_yqfD sporulation protein YqfD. YqfD is part	82.38
KOG0559	457	consensus Dihydrolipoamide succinyltransferase (2-	81.99
PRK03934	265	phosphatidylserine decarboxylase; Provisional	80.01

>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase

Probab=100.00  E-value=5.4e-52  Score=380.03  Aligned_cols=266  Identities=64%  Similarity=0.951  Sum_probs=213.1

Q ss_pred             CCCCccCCCCCccccccccCccccceeccceeEEEecCCCCCceeeecCCCCCCceeeeEEeeceeeeeccCCCCCCCcc
Q 023761            1 MASSSLATGTPSASAFSKNSSSLVHYYRNGTVFFRLSSSKPKLRFFAKGSQPSWKCATVVKSQLNEVAFDGSSNASATPA   80 (277)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sn~~~~~~   80 (277)
                      |||++.++.+.++  ++.+..     +++++.+|||+ +||+|||+.+|+++++..+|+||||+|||.++++||++++..
T Consensus         1 mas~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~a~~ne~~~~~~sn~~~~~~   72 (274)
T PLN02983          1 MASLSVPCAKTAA--AAANVG-----SRLSRSSFRLQ-PKPNISFPSKGPNPKRSAVPKVKAQLNEVAVDGSSNSAKSDD   72 (274)
T ss_pred             CCccccCccccee--eccccc-----ccccccccccC-CCCCcccccCCCCcccceeeeEEeeeceeeeccccccccccC
Confidence            7887766655543  222222     44558899999 999999999999999999999999999999999999998843


Q ss_pred             -------ccccccCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHhhCCCcEEEEEeCCeEEEEEeccCCCCCCCCCcccc
Q 023761           81 -------AETKDAKQPNEPSPSILASEESISEFISQVSSLIKLVDSRDIVELQLKQLDCELIIRKKEALPQPPAPASMAM  153 (277)
Q Consensus        81 -------~~~~~~~~~~~~~~~~~~~~~~~~~~i~eI~eLik~vd~s~I~ELelk~~~~~L~IrK~~~~~~~~~~a~~~~  153 (277)
                             +++++.+.+++++++.++++++|++||.|+.+|+|++|++||.||+||+.||+|.|||+++.++++..+++.+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~f~~qv~~lv~lv~~~di~e~~lk~~~~e~~irkkeal~~~~~~~~~~~  152 (274)
T PLN02983         73 PKSEVAPSEPKDEPPSNSSSKPNLPDEESISEFMTQVSSLVKLVDSRDIVELQLKQLDCELVIRKKEALPQPPPPAPVVM  152 (274)
T ss_pred             CcccccccccccccccccCCCcccCCHHHHHHHHHHHHHHHhhhccccceeeeccccceEEEEecccccCCCCCCCceEE
Confidence                   5677777888999999999999999999999999999999999999999999999999999877655555554


Q ss_pred             cCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCccCCccEEEEecCCCCCCCcccCCCEEecC
Q 023761          154 MHSPSPPPVMPPTQPAPAPTSSAPS-ASPAPPASPPSSTAGKSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKG  232 (277)
Q Consensus       154 ~~~~~~~~~~~~~~~~pa~~~~ap~-a~~~~~~~~~~~~~~~~~~~~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kG  232 (277)
                      ++.+.+...++.++  ++ +.+++. .....+.+.+.+.+.+...++...|+|||.|+||+.|.+++.|+|++||.|++|
T Consensus       153 ~~~~~~~~~~p~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~V~APmaGtf~r~p~pge~w~VkvGDsVkkG  229 (274)
T PLN02983        153 MQPPPPHAMPPASP--PA-AQPAPSAPASSPPPTPASPPPAKAPKSSHPPLKSPMAGTFYRSPAPGEPPFVKVGDKVQKG  229 (274)
T ss_pred             ecCCCcccCCCCCC--cc-cCCCCCCCCCCCCCCCCCCCCCCCCcCCCCeEeCCcCeEEEeccCCCCcceeCCCCEecCC
Confidence            54433222222111  11 111111 001111112223344566777889999999999999999999999999999999


Q ss_pred             CeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761          233 QVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP  277 (277)
Q Consensus       233 qvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep  277 (277)
                      |+||+||+||+.++|+|+++|+|.+|++++||.|.+|++|++|+|
T Consensus       230 QvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IEP  274 (274)
T PLN02983        230 QVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIEP  274 (274)
T ss_pred             CEEEEEEeeceeeEEecCCCeEEEEEecCCCCEeCCCCEEEEecC
Confidence            999999999999999999999999999999999999999999987

>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein

Probab=99.97  E-value=7.7e-31  Score=225.22  Aligned_cols=156  Identities=42%  Similarity=0.691  Sum_probs=112.9

Q ss_pred             hhHHHHHHHHHHHhhCCCcEEEEEeCCeEEEEEeccCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 023761          105 EFISQVSSLIKLVDSRDIVELQLKQLDCELIIRKKEALPQPPAPASMAMMHSPSPPPVMPPTQPAPAPTSSAPSASPAPP  184 (277)
Q Consensus       105 ~~i~eI~eLik~vd~s~I~ELelk~~~~~L~IrK~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~pa~~~~ap~a~~~~~  184 (277)
                      |++++|++||++|++++|+||+|+.+|++|+|+|........ ..+..  ..+  . ..+.    +......+..    +
T Consensus         1 Md~~~Ik~Li~~~~~s~l~elei~~~~~~l~l~k~~~~~~~~-~~~~~--~~~--~-~~~~----~~~~~~~~~~----~   66 (156)
T TIGR00531         1 MNIREIKELIKLIEESGITELELKEEEFEVRLSKAAAAAKKS-AVQQA--AAP--V-PAQV----PAAPSAQAPA----P   66 (156)
T ss_pred             CCHHHHHHHHHHHHHCCCcEEEEEeCCEEEEEEecCCCCccc-ccccc--CCC--c-cccC----CCCCCCCCCC----C
Confidence            578999999999999999999999999999999964311100 00000  000  0 0000    0000000000    0


Q ss_pred             CCCCCCCCCCCCCCCCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCC
Q 023761          185 ASPPSSTAGKSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK  264 (277)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd  264 (277)
                      .  .........+.+...|+|||+|+||++|+|+.+|||++||.|++||+||+||+||++++|+|+++|+|.+|++++|+
T Consensus        67 ~--~~~~~~~~~~~~~~~v~sp~~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~  144 (156)
T TIGR00531        67 A--VCAPAPAKADKKGHFVRSPMVGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQ  144 (156)
T ss_pred             C--CCCCCcccccCCCCEEeCCCCEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCC
Confidence            0  00000011122345799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCeEEEEc
Q 023761          265 PVSVDTPLFVIE  276 (277)
Q Consensus       265 ~V~~GqpL~~Ie  276 (277)
                      .|++|++||+|+
T Consensus       145 ~V~~Gq~L~~i~  156 (156)
T TIGR00531       145 PVEYGQPLIVIE  156 (156)
T ss_pred             EECCCCEEEEEC
Confidence            999999999985

The gene name is accB or fabE.

>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.97  E-value=1.8e-30  Score=222.70  Aligned_cols=155  Identities=45%  Similarity=0.756  Sum_probs=112.8

Q ss_pred             hhHHHHHHHHHHHhhCCCcEEEEEeCCeEEEEEeccCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 023761          105 EFISQVSSLIKLVDSRDIVELQLKQLDCELIIRKKEALPQPPAPASMAMMHSPSPPPVMPPTQPAPAPTSSAPSASPAPP  184 (277)
Q Consensus       105 ~~i~eI~eLik~vd~s~I~ELelk~~~~~L~IrK~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~pa~~~~ap~a~~~~~  184 (277)
                      |++++|++||++|++++|+||+|+.+|++|+|+|.............  ...+    ..+.    ++.. ++...   .+
T Consensus         1 Md~~~I~~Li~~~~~s~l~ele~~~~~~~i~l~k~~~~~~~~~~~~~--~~~p----~~~~----~~~~-~~~~~---~~   66 (155)
T PRK06302          1 MDIRKIKKLIELVDESGISEFEIKEGEESVRISRAAAAPVAPVAQQA--AAAP----VAAA----PAAA-AAAAA---AP   66 (155)
T ss_pred             CCHHHHHHHHHHHHHCCCeEEEEEcCCEEEEEEeCCCCCcccccccc--ccCC----CCCC----CCCC-Ccccc---CC
Confidence            57899999999999999999999999999999986431100000000  0000    0000    0000 00000   00


Q ss_pred             CCCCCCCCCCCCCCCCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCC
Q 023761          185 ASPPSSTAGKSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK  264 (277)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd  264 (277)
                      .  ..... .....+...|+|||+|+||++|+|+++|||++||.|++||+||+||+||++++|+|+++|+|.++++++|+
T Consensus        67 ~--~~~~~-~~~~~~~~~v~sp~~G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~  143 (155)
T PRK06302         67 A--AAPAA-AAAEAEGHVVTSPMVGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQ  143 (155)
T ss_pred             C--CCCCC-CccCCCCCEEeCCcCEEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCC
Confidence            0  00000 11122345799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCeEEEEc
Q 023761          265 PVSVDTPLFVIE  276 (277)
Q Consensus       265 ~V~~GqpL~~Ie  276 (277)
                      .|++|++||+|+
T Consensus       144 ~V~~Gq~L~~i~  155 (155)
T PRK06302        144 PVEFGQPLFVIE  155 (155)
T ss_pred             EeCCCCEEEEeC
Confidence            999999999985

>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]

Probab=99.95  E-value=4.7e-27  Score=198.41  Aligned_cols=140  Identities=41%  Similarity=0.627  Sum_probs=100.8

Q ss_pred             HHHHHHHHhhCCCcEEEEEeCCeEEEEEeccCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 023761          110 VSSLIKLVDSRDIVELQLKQLDCELIIRKKEALPQPPAPASMAMMHSPSPPPVMPPTQPAPAPTSSAPSASPAPPASPPS  189 (277)
Q Consensus       110 I~eLik~vd~s~I~ELelk~~~~~L~IrK~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~pa~~~~ap~a~~~~~~~~~~  189 (277)
                      |++|+++++++++.+|+++.++.++++++.....+. ...........   +.       .....+....    +    .
T Consensus         1 i~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~-------~~~~~~~~~~----~----~   61 (140)
T COG0511           1 IKELIKLVVESDGTEFEVKVEEGEVRLSRKTPVVQD-VPAPAPIEASS---PS-------AAAAQPAASA----P----A   61 (140)
T ss_pred             CcchhhheeeeCcEEEEEEeCCcEEEEeeccccccc-ccccccccccc---cc-------ccccCccccc----c----c
Confidence            468999999999999999999999999887611000 00000000000   00       0000000000    0    0


Q ss_pred             CCCCCCCCCCCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCC
Q 023761          190 STAGKSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVD  269 (277)
Q Consensus       190 ~~~~~~~~~~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~G  269 (277)
                        +......+...|+|||+|+||+       +||++||+|++||+||+||+|||+|+|.||.+|+|.+|++++||.|++|
T Consensus        62 --~~~~~~~~~~~V~SPm~Gtv~~-------~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~Ve~G  132 (140)
T COG0511          62 --PAPAAAAGGTQVTSPMVGTVYK-------PFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYG  132 (140)
T ss_pred             --CCccccccCceEecCcceEEEE-------EeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCccCCC
Confidence              0000111456899999999999       9999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEcC
Q 023761          270 TPLFVIEP  277 (277)
Q Consensus       270 qpL~~Iep  277 (277)
                      |+|++|++
T Consensus       133 ~~L~~I~~  140 (140)
T COG0511         133 DPLAVIEP  140 (140)
T ss_pred             CEEEEecC
Confidence            99999985

>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional

Probab=99.69  E-value=9.8e-17  Score=120.16  Aligned_cols=68  Identities=21%  Similarity=0.379  Sum_probs=66.3

Q ss_pred             CccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      .|++|+.|++.+       |+|++||.|++||+||.||+||+.++|+||.+|+|.++++++|+.|..|++|++|.
T Consensus         4 ~v~a~~~G~i~~-------~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~   71 (71)
T PRK05889          4 DVRAEIVASVLE-------VVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS   71 (71)
T ss_pred             EEeCCCCEEEEE-------EEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence            599999999999       99999999999999999999999999999999999999999999999999999884

>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid

Probab=99.67  E-value=3.6e-17  Score=123.68  Aligned_cols=73  Identities=38%  Similarity=0.510  Sum_probs=67.5

Q ss_pred             CccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 023761          202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI  275 (277)
Q Consensus       202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~I  275 (277)
                      .|++|+.|.+++.. ....|+|++||.|++||+||.||+||+.++|+||++|+|.++++++|+.|.+|++|++|
T Consensus         2 ~i~~P~~G~~~~~~-~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I   74 (74)
T PF00364_consen    2 EIKAPMLGEVMEEG-TITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII   74 (74)
T ss_dssp             EEEESSSSEEEEEE-EEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred             EEECCCCccEEEec-ceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence            47889999877744 55669999999999999999999999999999999999999999999999999999987

Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....

>PRK07051 hypothetical protein; Validated

Probab=99.66  E-value=4.9e-16  Score=119.24  Aligned_cols=76  Identities=45%  Similarity=0.823  Sum_probs=73.5

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ..|+||+.|+|++++.+..+++|++||.|++||.||.||+||+.++|+||.+|+|.++++++|+.|..|++|++|+
T Consensus         4 ~~~~ap~~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~i~   79 (80)
T PRK07051          4 HEIVSPLPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLARIE   79 (80)
T ss_pred             cEEeCCCceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence            3689999999999999999999999999999999999999999999999999999999999999999999999985

>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.65  E-value=4.6e-16  Score=115.83  Aligned_cols=68  Identities=35%  Similarity=0.513  Sum_probs=66.5

Q ss_pred             CccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      .|.||+.|+|++       |++++||+|++||+||.||+||+..+|.++.+|+|.++++++||.|..|++|++|+
T Consensus         3 ~i~a~~~G~i~~-------~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie   70 (70)
T PRK08225          3 KVYASMAGNVWK-------IVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE   70 (70)
T ss_pred             eEeCCCCEEEEE-------EEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence            689999999999       99999999999999999999999999999999999999999999999999999986

>PRK06748 hypothetical protein; Validated

Probab=99.63  E-value=1.1e-15  Score=119.22  Aligned_cols=69  Identities=22%  Similarity=0.255  Sum_probs=66.1

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEc-cceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA-MKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEa-mK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ..|+|||.|++.+       |++++||.|++||.|+.||+ +|.+.+|.||.+|+|.+++++.||.|..|++|++|+
T Consensus         5 ~~v~sp~~G~I~~-------w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~   74 (83)
T PRK06748          5 EGVYSPCYGKVEK-------LFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITVR   74 (83)
T ss_pred             eEEecCCcEEEEE-------EEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEEE
Confidence            3699999999999       99999999999999999999 678889999999999999999999999999999986

>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.62  E-value=3.5e-15  Score=125.27  Aligned_cols=71  Identities=37%  Similarity=0.515  Sum_probs=68.2

Q ss_pred             CCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          199 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       199 ~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      +...|++||.|++.+       |+|++||.|++||.|++||+||+.++|.||++|+|.+|+++.||.|..|++|++|.
T Consensus        60 ~~~~v~Ap~~G~V~~-------i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I~  130 (130)
T PRK06549         60 GADAMPSPMPGTILK-------VLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITIG  130 (130)
T ss_pred             CCcEEECCCCEEEEE-------EEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEeC
Confidence            456899999999999       99999999999999999999999999999999999999999999999999999873

>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.59  E-value=1.1e-14  Score=125.28  Aligned_cols=70  Identities=34%  Similarity=0.573  Sum_probs=67.6

Q ss_pred             CCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 023761          199 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI  275 (277)
Q Consensus       199 ~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~I  275 (277)
                      +...|+||+.|+|.+       |+|++||.|++||.|++||+|||.++|.||.+|+|.++++++||.|..|++|++|
T Consensus        83 ~~~~v~ap~~G~I~~-------~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I  152 (153)
T PRK05641         83 GENVVTAPMPGKILR-------ILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL  152 (153)
T ss_pred             CCCEEECCCCeEEEE-------EEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence            345799999999999       9999999999999999999999999999999999999999999999999999987

>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

Probab=99.54  E-value=3.1e-14  Score=102.38  Aligned_cols=67  Identities=39%  Similarity=0.630  Sum_probs=64.7

Q ss_pred             CccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 023761          202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI  275 (277)
Q Consensus       202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~I  275 (277)
                      .|+||+.|+|.+       |+++.||.|++||.|+.|+++++..+|+||++|+|..+++++|+.|..|++|+.|
T Consensus         1 ~v~a~~~G~v~~-------~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i   67 (67)
T cd06850           1 EVTAPMPGTVVK-------VLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI   67 (67)
T ss_pred             CccCCccEEEEE-------EEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence            478999999999       9999999999999999999999999999999999999999999999999999975

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=99.44  E-value=3.2e-13  Score=137.32  Aligned_cols=71  Identities=30%  Similarity=0.480  Sum_probs=68.1

Q ss_pred             CCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          199 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       199 ~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      +...|.|||+|++.+       |+|++||.|++||+|++||+|||.++|.||++|+|.++++++|+.|..|++|++|+
T Consensus       524 ~~~~v~apm~G~V~~-------~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~  594 (596)
T PRK14042        524 GPGDITVAIPGSIIA-------IHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVE  594 (596)
T ss_pred             CCCeEecCcceEEEE-------EEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEe
Confidence            334799999999999       99999999999999999999999999999999999999999999999999999986

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=99.37  E-value=1.3e-12  Score=132.95  Aligned_cols=73  Identities=38%  Similarity=0.582  Sum_probs=70.1

Q ss_pred             CCCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761          198 SSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP  277 (277)
Q Consensus       198 ~~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep  277 (277)
                      .+...|+||+.|+|.+       |+|++||.|++||+|++||+||+.++|+||++|+|.++++++|+.|+.|++|++|+|
T Consensus       520 ~~~~~V~Ap~~G~v~~-------~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~~  592 (592)
T PRK09282        520 SAPGAVTSPMPGTVVK-------VKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIEP  592 (592)
T ss_pred             CCCceEeCCCcEEEEE-------EEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEecC
Confidence            4456899999999999       999999999999999999999999999999999999999999999999999999987

>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

Probab=99.35  E-value=2.2e-12  Score=119.30  Aligned_cols=64  Identities=31%  Similarity=0.435  Sum_probs=61.7

Q ss_pred             ccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761          207 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP  277 (277)
Q Consensus       207 m~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep  277 (277)
                      ..|++.+       |+|++||.|++||+||+||+||+.++|+||.+|+|.++++++|+.|..|++|+.|++
T Consensus        15 ~~g~~~~-------~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~   78 (371)
T PRK14875         15 TEGKVAG-------WLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVAD   78 (371)
T ss_pred             ceEEEEE-------EEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEec
Confidence            4799999       999999999999999999999999999999999999999999999999999999863

>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

Probab=99.35  E-value=4.3e-12  Score=94.28  Aligned_cols=61  Identities=44%  Similarity=0.664  Sum_probs=59.1

Q ss_pred             cEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 023761          208 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI  275 (277)
Q Consensus       208 ~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~I  275 (277)
                      .|+++.       |++++||.|++||.|+.||+||+..+|+||++|+|.+++++.|+.|..|++|++|
T Consensus        13 ~g~~~~-------~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i   73 (73)
T cd06663          13 DGTVVK-------WLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI   73 (73)
T ss_pred             CEEEEE-------EEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence            588999       9999999999999999999999999999999999999999999999999999975

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=99.33  E-value=3.1e-12  Score=130.19  Aligned_cols=70  Identities=34%  Similarity=0.607  Sum_probs=67.4

Q ss_pred             CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ...|+|||.|+|++       |+|++||.|++||+||+||+||+.++|.||.+|+|.++++++|+.|..|++|++|.
T Consensus       524 ~~~V~Ap~~G~I~~-------~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I~  593 (593)
T PRK14040        524 GEPVTAPLAGNIFK-------VIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTLA  593 (593)
T ss_pred             CceEECCccEEEEE-------EEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence            44799999999999       99999999999999999999999999999999999999999999999999999873

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=99.33  E-value=3.2e-12  Score=129.83  Aligned_cols=67  Identities=39%  Similarity=0.575  Sum_probs=64.2

Q ss_pred             CCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeE
Q 023761          199 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPL  272 (277)
Q Consensus       199 ~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL  272 (277)
                      +...|.|||+|++++       |+|++||.|++||+|++||+|||.++|.||.+|+|.+|++++||.|..|++|
T Consensus       516 ~~~~v~ap~~G~v~~-------~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l  582 (582)
T TIGR01108       516 AGTPVTAPIAGSIVK-------VKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL  582 (582)
T ss_pred             CCCeEeCCccEEEEE-------EEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence            345799999999999       9999999999999999999999999999999999999999999999999976

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

Probab=99.32  E-value=2.9e-12  Score=128.33  Aligned_cols=72  Identities=35%  Similarity=0.508  Sum_probs=69.0

Q ss_pred             CCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761          199 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP  277 (277)
Q Consensus       199 ~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep  277 (277)
                      ....|.|||+|++..       +.|++|+.|.+||+|+++|+|||.+.|+||.+|+|.++.++.||.|..|++|++|++
T Consensus       574 ~~~~l~aPMpG~v~~-------v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~~  645 (645)
T COG4770         574 SSGELLAPMPGTVVS-------VAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFEE  645 (645)
T ss_pred             CCCceecCCCceEEE-------EEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCccccCceEEEecC
Confidence            345799999999999       999999999999999999999999999999999999999999999999999999975

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=99.30  E-value=4.6e-12  Score=136.81  Aligned_cols=73  Identities=30%  Similarity=0.505  Sum_probs=69.3

Q ss_pred             CCCCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          197 KSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       197 ~~~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ..+...|.|||.|++..       |+|++||.|++||+|++||+|||.++|.||.+|+|.+|++++|+.|+.|++|+.|+
T Consensus      1071 ~~~~~~I~a~~~G~v~~-------~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235      1071 PGNPAHVGAPMPGVIIE-------VKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred             cccCceeecCCCcEEEE-------EEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence            34456899999999999       99999999999999999999999999999999999999999999999999999985

This enzyme plays a role in gluconeogensis but not glycolysis.

>TIGR02712 urea_carbox urea carboxylase

Probab=99.30  E-value=6e-12  Score=136.60  Aligned_cols=73  Identities=32%  Similarity=0.521  Sum_probs=69.8

Q ss_pred             CCCCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          197 KSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       197 ~~~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ..+...|.|||.|+|++       |+|++||.|++||+||+||+|||.++|.||.+|+|.++++++||.|..||+|+.|+
T Consensus      1129 ~~~~~~v~a~~~G~v~~-------~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712      1129 PEGAEQVESEYAGNFWK-------VLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred             CCCCcEEeCCceEEEEE-------EEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence            34567899999999999       99999999999999999999999999999999999999999999999999999985

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.

>PLN02226 2-oxoglutarate dehydrogenase E2 component

Probab=99.30  E-value=4.9e-12  Score=125.29  Aligned_cols=63  Identities=29%  Similarity=0.398  Sum_probs=61.0

Q ss_pred             ccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          207 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       207 m~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ..|+|.+       |+|++||.|++||+||+||+||+.++|+||++|+|.+|++++||.|..|++|+.|+
T Consensus       104 ~eG~I~~-------w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~V~vG~~L~~I~  166 (463)
T PLN02226        104 TDGTLAT-------FLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGTKVAIIS  166 (463)
T ss_pred             ceEEEEE-------EEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCEecCCCEEEEec
Confidence            4689999       99999999999999999999999999999999999999999999999999999985

>PRK12999 pyruvate carboxylase; Reviewed

Probab=99.29  E-value=6.7e-12  Score=135.71  Aligned_cols=72  Identities=32%  Similarity=0.502  Sum_probs=69.2

Q ss_pred             CCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761          199 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP  277 (277)
Q Consensus       199 ~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep  277 (277)
                      +...|.|||.|++.+       ++|++||.|++||+|++||+|||.++|.||.+|+|.+|++++|+.|+.|+.|+.|++
T Consensus      1075 ~~~~v~apm~G~v~~-------i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~V~~g~~l~~i~~ 1146 (1146)
T PRK12999       1075 NPGHVGAPMPGSVVT-------VLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQVEAGDLLVELEP 1146 (1146)
T ss_pred             CCceEeCCceEEEEE-------EEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCEECCCCEEEEEcC
Confidence            345799999999999       999999999999999999999999999999999999999999999999999999985

>PTZ00144 dihydrolipoamide succinyltransferase; Provisional

Probab=99.26  E-value=1.3e-11  Score=121.05  Aligned_cols=63  Identities=41%  Similarity=0.563  Sum_probs=61.0

Q ss_pred             ccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          207 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       207 m~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ..|++.+       |+|++||.|++||+||+||+||+.++|+||++|+|.++++++||.|..|++|++|+
T Consensus        57 ~eg~I~~-------w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~  119 (418)
T PTZ00144         57 SEGTVVE-------WKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEID  119 (418)
T ss_pred             ceEEEEE-------EEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCEecCCCEEEEEc
Confidence            3689999       99999999999999999999999999999999999999999999999999999986

>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]

Probab=99.23  E-value=1e-11  Score=128.25  Aligned_cols=76  Identities=36%  Similarity=0.516  Sum_probs=71.8

Q ss_pred             CCCCCCCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEE
Q 023761          194 KSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLF  273 (277)
Q Consensus       194 ~~~~~~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~  273 (277)
                      |++..+..+|.|||+|++..       ..|+.||+|++||+|++||+|||...|.||++|+|.+++|.+||.|+.|+.|+
T Consensus      1073 KAd~~Np~higApmpG~Vv~-------v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~i~~gDLLi 1145 (1149)
T COG1038        1073 KADPGNPGHIGAPMPGVVVE-------VKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQIDGGDLLV 1145 (1149)
T ss_pred             ccCCCCccccCCCCCCceEE-------EEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCccccCceEE
Confidence            45566777999999999999       99999999999999999999999999999999999999999999999999999


Q ss_pred             EEc
Q 023761          274 VIE  276 (277)
Q Consensus       274 ~Ie  276 (277)
                      .++
T Consensus      1146 ~~~ 1148 (1149)
T COG1038        1146 VVE 1148 (1149)
T ss_pred             Ecc
Confidence            875

>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

Probab=99.17  E-value=5.2e-11  Score=116.28  Aligned_cols=62  Identities=34%  Similarity=0.493  Sum_probs=60.6

Q ss_pred             cEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          208 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       208 ~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      -|++.+       |++++||.|++||+|++||++|..++|.||++|+|.+|++++||.|..|++|++|.
T Consensus        16 EG~I~~-------W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~   77 (404)
T COG0508          16 EGTIVE-------WLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIE   77 (404)
T ss_pred             eEEEEE-------EecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCEEcCCCeEEEEe
Confidence            689999       99999999999999999999999999999999999999999999999999999985

>PRK05704 dihydrolipoamide succinyltransferase; Validated

Probab=99.17  E-value=6.4e-11  Score=115.73  Aligned_cols=63  Identities=33%  Similarity=0.397  Sum_probs=61.0

Q ss_pred             ccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          207 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       207 m~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ..|++.+       |+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+.|..|++|++|+
T Consensus        15 ~eg~i~~-------w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~   77 (407)
T PRK05704         15 TEATIAT-------WHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRID   77 (407)
T ss_pred             ceEEEEE-------EEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEe
Confidence            3599999       99999999999999999999999999999999999999999999999999999986

>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

Probab=99.09  E-value=2.4e-10  Score=111.60  Aligned_cols=62  Identities=27%  Similarity=0.391  Sum_probs=60.6

Q ss_pred             cEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          208 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       208 ~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      .|++.+       |+|++||.|++||.||+||+||+.++|.|+++|+|.++++++|+.|..|++|++|+
T Consensus        14 eg~i~~-------w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~   75 (403)
T TIGR01347        14 EGTVAE-------WHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILE   75 (403)
T ss_pred             eEEEEE-------EEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEe
Confidence            599999       99999999999999999999999999999999999999999999999999999986

dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.

>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

Probab=99.04  E-value=4e-10  Score=114.76  Aligned_cols=63  Identities=29%  Similarity=0.408  Sum_probs=60.9

Q ss_pred             ccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          207 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       207 m~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ..|++.+       |+|++||.|++||.||.||+||+.++|.|+++|+|.+|++++|+.|..|++|++|+
T Consensus       148 ~eg~i~~-------w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~v~vG~~l~~i~  210 (590)
T TIGR02927       148 TEGTITQ-------WLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDTVDVGAEIAKIG  210 (590)
T ss_pred             ceEEEEE-------EEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCEecCCCEEEEEe
Confidence            4688999       99999999999999999999999999999999999999999999999999999985

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).

>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

Probab=99.04  E-value=3.7e-10  Score=115.72  Aligned_cols=64  Identities=28%  Similarity=0.280  Sum_probs=60.9

Q ss_pred             CccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          206 PMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       206 Pm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      -..|++.+       |+|++||.|++||.||.||+||+.++|+||++|+|.+|++++|+.|..|++|+.|.
T Consensus       216 ~~eg~v~~-------w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~  279 (633)
T PRK11854        216 GDEVEVTE-------VMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFE  279 (633)
T ss_pred             ccceEEEE-------EEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCCEecCCCEEEEEe
Confidence            34688888       99999999999999999999999999999999999999999999999999999985

>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

Probab=99.01  E-value=6.5e-10  Score=113.94  Aligned_cols=63  Identities=25%  Similarity=0.320  Sum_probs=60.8

Q ss_pred             ccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          207 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       207 m~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ..|++.+       |+|++||.|++||+|++||+||+.++|+||.+|+|.++++++||.|..|++|++|+
T Consensus        13 ~eg~i~~-------~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~   75 (633)
T PRK11854         13 DEVEVTE-------ILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGALIMIFE   75 (633)
T ss_pred             ceEEEEE-------EEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEe
Confidence            4688989       99999999999999999999999999999999999999999999999999999986

>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=98.97  E-value=1e-09  Score=110.92  Aligned_cols=68  Identities=25%  Similarity=0.306  Sum_probs=61.6

Q ss_pred             CccCCcc-----EEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          202 PLKCPMA-----GTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       202 ~I~APm~-----G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      .|+-|..     |++.+       |+|++||.|++||.||+||+||+.++|+||++|+|.+++++.|+.|..|++|+.|.
T Consensus       118 ~~~~P~~g~~~eg~i~~-------w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~v~vG~~l~~i~  190 (546)
T TIGR01348       118 EVTVPDIGDIEKVTVIE-------VLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLS  190 (546)
T ss_pred             EEeCCCCCCcceeEEeE-------EeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCEecCCCEEEEEe
Confidence            4555544     55666       99999999999999999999999999999999999999999999999999999985

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.

>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]

Probab=98.96  E-value=1.1e-09  Score=111.98  Aligned_cols=77  Identities=27%  Similarity=0.349  Sum_probs=71.6

Q ss_pred             CCCCCCCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEE
Q 023761          194 KSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLF  273 (277)
Q Consensus       194 ~~~~~~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~  273 (277)
                      ++.......|.+||+|++..       +.|++|++|+|||.||++.+|||.+-|.+|.+|+|.++.+.+|+.|+.|+.++
T Consensus      1100 kA~~~~~g~igAPMpG~vie-------ikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~~~g~DL~~ 1172 (1176)
T KOG0369|consen 1100 KADPGVKGHIGAPMPGTVIE-------IKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTKVEGGDLIV 1172 (1176)
T ss_pred             cCCCCCcccccCCCCCceEE-------EEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCcccccceEE
Confidence            33445566899999999999       99999999999999999999999999999999999999999999999999999


Q ss_pred             EEcC
Q 023761          274 VIEP  277 (277)
Q Consensus       274 ~Iep  277 (277)
                      .||+
T Consensus      1173 ~~E~ 1176 (1176)
T KOG0369|consen 1173 ELEH 1176 (1176)
T ss_pred             EccC
Confidence            9985

>PRK11855 dihydrolipoamide acetyltransferase; Reviewed

Probab=98.94  E-value=1.8e-09  Score=108.95  Aligned_cols=62  Identities=35%  Similarity=0.373  Sum_probs=58.8

Q ss_pred             cEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          208 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       208 ~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      .|++.+       |+|++||.|++||.||.||+||+.++|+||++|+|.++++++|+.|..|++|+.|.
T Consensus       132 eg~i~~-------w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~  193 (547)
T PRK11855        132 EVEVIE-------WLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIE  193 (547)
T ss_pred             eeEEeE-------EEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCEecCCCEEEEEe
Confidence            466666       99999999999999999999999999999999999999999999999999999985

>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]

Probab=98.93  E-value=4.1e-10  Score=108.12  Aligned_cols=63  Identities=32%  Similarity=0.450  Sum_probs=59.6

Q ss_pred             cEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761          208 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP  277 (277)
Q Consensus       208 ~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep  277 (277)
                      -|.+..       |..++||.|++++.||.||++|...+|.||.+|+|+++||++||.|+.|+.|+.|+|
T Consensus        86 eG~l~~-------~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~  148 (457)
T KOG0559|consen   86 EGDLAQ-------WLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKISP  148 (457)
T ss_pred             cchHHH-------HhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCcccCCceeEEecC
Confidence            456656       999999999999999999999999999999999999999999999999999999975

>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

Probab=98.92  E-value=6.9e-09  Score=73.25  Aligned_cols=64  Identities=34%  Similarity=0.476  Sum_probs=60.9

Q ss_pred             CCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 023761          205 CPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI  275 (277)
Q Consensus       205 APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~I  275 (277)
                      ++..|++..       |+++.|+.|..|+.++.++.+++...+.++.+|+|.+..+.+|+.+..|++|++|
T Consensus        11 ~~~~g~i~~-------~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~   74 (74)
T cd06849          11 SMTEGTIVE-------WLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI   74 (74)
T ss_pred             CCcEEEEEE-------EEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence            456799999       9999999999999999999999999999999999999999999999999999975

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.

>PLN02528 2-oxoisovalerate dehydrogenase E2 component

Probab=98.92  E-value=2.9e-09  Score=104.38  Aligned_cols=62  Identities=31%  Similarity=0.363  Sum_probs=60.1

Q ss_pred             cEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          208 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       208 ~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      -|++.+       |+|++||.|++||.||.||+||+.+++.++.+|+|.++++++|+.|..|++|++|+
T Consensus        12 eg~i~~-------w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~   73 (416)
T PLN02528         12 ECELLR-------WFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIM   73 (416)
T ss_pred             EEEEEE-------EEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEe
Confidence            489999       99999999999999999999999999999999999999999999999999999885

>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=98.88  E-value=4.8e-09  Score=106.04  Aligned_cols=67  Identities=27%  Similarity=0.344  Sum_probs=63.0

Q ss_pred             ccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          203 LKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       203 I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      +..+..|++.+       |+|++||.|++||+||+||+||+.++|.++++|+|.+++++.|+.|..|++|++|+
T Consensus         8 lg~~~~g~i~~-------~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~V~~G~~La~i~   74 (546)
T TIGR01348         8 IGDNEEGEVIE-------VLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLE   74 (546)
T ss_pred             CCCCCceEEEE-------EEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCEEeccceEEEEe
Confidence            33446799999       99999999999999999999999999999999999999999999999999999985

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.

>PRK11855 dihydrolipoamide acetyltransferase; Reviewed

Probab=98.82  E-value=9.1e-09  Score=103.83  Aligned_cols=62  Identities=34%  Similarity=0.331  Sum_probs=60.3

Q ss_pred             cEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          208 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       208 ~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      .|++..       |+|++||.|++||+||.||+||+.++|.++++|+|.+++++.|+.|..|++|+.|+
T Consensus        15 ~g~i~~-------~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~V~~G~~L~~i~   76 (547)
T PRK11855         15 EVEVIE-------WLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIE   76 (547)
T ss_pred             eEEEEE-------EEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCEecCCceeeEec
Confidence            589999       99999999999999999999999999999999999999999999999999999886

>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

Probab=98.81  E-value=1.2e-08  Score=99.38  Aligned_cols=63  Identities=35%  Similarity=0.485  Sum_probs=60.8

Q ss_pred             ccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          207 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       207 m~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ..|++.+       |+|++||.|++||+||.||++|+.++|.||++|+|.++++++|+.|..|++|++|.
T Consensus        15 ~~g~i~~-------w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~   77 (411)
T PRK11856         15 TEGEIVE-------WLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIE   77 (411)
T ss_pred             ceEEEEE-------EEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCEeCCCCEEEEEe
Confidence            4689999       99999999999999999999999999999999999999999999999999999985

>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=98.77  E-value=1.5e-08  Score=99.90  Aligned_cols=63  Identities=30%  Similarity=0.457  Sum_probs=60.6

Q ss_pred             ccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCc-cCCCCeEEEEc
Q 023761          207 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKP-VSVDTPLFVIE  276 (277)
Q Consensus       207 m~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~-V~~GqpL~~Ie  276 (277)
                      ..|++.+       |++++||.|++||.||.||++|+.++|.|+.+|+|.+++++.|+. |..|++|++|+
T Consensus        12 ~eg~i~~-------w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~   75 (435)
T TIGR01349        12 TTGNLAK-------WLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLV   75 (435)
T ss_pred             ceEEEEE-------EEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEe
Confidence            3689999       999999999999999999999999999999999999999999999 99999999984

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.

>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=98.76  E-value=6.2e-09  Score=103.81  Aligned_cols=69  Identities=29%  Similarity=0.466  Sum_probs=66.6

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ..+.+||+|.+..       .+|+.||.|++||.||.+++|||.+.++||.+|+|..+.++.|+.|..|.+|++++
T Consensus       602 ~v~~aPMpG~Iek-------v~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~v~~g~vlv~~~  670 (670)
T KOG0238|consen  602 GVIVAPMPGIIEK-------VLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGATVGDGAVLVEFE  670 (670)
T ss_pred             CceecCCCCeeee-------eeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcccCCCceEEEeC
Confidence            4689999999999       99999999999999999999999999999999999999999999999999999875

>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

Probab=98.76  E-value=1.6e-08  Score=102.18  Aligned_cols=61  Identities=30%  Similarity=0.467  Sum_probs=58.8

Q ss_pred             cEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCC-ccCCCCeEEEE
Q 023761          208 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK-PVSVDTPLFVI  275 (277)
Q Consensus       208 ~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd-~V~~GqpL~~I  275 (277)
                      .|++.+       |++++||.|++||.||.||++|..++|.++.+|+|.+|++++|+ .|..|++|++|
T Consensus       126 eg~I~~-------W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~v~vG~~ia~i  187 (539)
T PLN02744        126 EGNIAR-------WLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKEIKVGEVIAIT  187 (539)
T ss_pred             eeEEEE-------EEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCcccCCCCEEEEE
Confidence            589999       99999999999999999999999999999999999999999996 79999999987

>PRK11892 pyruvate dehydrogenase subunit beta; Provisional

Probab=98.67  E-value=4.4e-08  Score=97.47  Aligned_cols=62  Identities=35%  Similarity=0.497  Sum_probs=59.3

Q ss_pred             cEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCC-ccCCCCeEEEEc
Q 023761          208 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK-PVSVDTPLFVIE  276 (277)
Q Consensus       208 ~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd-~V~~GqpL~~Ie  276 (277)
                      .|++.+       |+|++||.|++||.|+.||++|+.++|.|+.+|+|.+++++.|+ .|..|++|++|+
T Consensus        16 eg~i~~-------w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~   78 (464)
T PRK11892         16 EGTLAK-------WLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLL   78 (464)
T ss_pred             eeEEEE-------EEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEc
Confidence            488999       99999999999999999999999999999999999999999995 799999999985

>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

Probab=98.65  E-value=5e-08  Score=99.58  Aligned_cols=63  Identities=27%  Similarity=0.354  Sum_probs=60.3

Q ss_pred             ccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          207 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       207 m~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ..|++.+       |+|++||.|++||.||.||+||+.++|.++.+|+|.+++++.|+.|..|+.|+.|+
T Consensus        15 ~eg~i~~-------w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~v~vG~~ia~i~   77 (590)
T TIGR02927        15 TEGTITQ-------WLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDTVDIGGEIAIIG   77 (590)
T ss_pred             cEEEEEE-------EEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCEEeeeeeEEEEe
Confidence            4688999       99999999999999999999999999999999999999999999999999999874

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).

>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]

Probab=98.59  E-value=5.7e-08  Score=95.81  Aligned_cols=67  Identities=31%  Similarity=0.446  Sum_probs=61.7

Q ss_pred             ccCCc-cEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCC-CccCCCCeEEEEc
Q 023761          203 LKCPM-AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDR-KPVSVDTPLFVIE  276 (277)
Q Consensus       203 I~APm-~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~G-d~V~~GqpL~~Ie  276 (277)
                      +-.-| -|.|.+       |..++||++.+||+||+||++|..+++++..+|.+.+|++++| ..|..|.+|+.|-
T Consensus        46 LSPTMeeGnIvs-------W~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiiv  114 (470)
T KOG0557|consen   46 LSPTMEEGNIVS-------WKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIV  114 (470)
T ss_pred             CCccccCCceee-------EeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEe
Confidence            33344 599999       9999999999999999999999999999999999999999999 8899999999873

>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional

Probab=98.50  E-value=3.4e-07  Score=89.29  Aligned_cols=69  Identities=22%  Similarity=0.264  Sum_probs=61.4

Q ss_pred             CCccCCccEEEEecCCCCCCCc-ccCCCEEecCCeEEEEEcc--------------------------------------
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPF-VKVGDRVQKGQVLCIIEAM--------------------------------------  241 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~-VkvGd~V~kGqvL~~IEam--------------------------------------  241 (277)
                      ..|.+++.|.+.+       .+ +++||.|++||+|+.|+.-                                      
T Consensus       124 ~~v~arv~G~V~~-------l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~  196 (409)
T PRK09783        124 AIVQARAAGFIDK-------VYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEAD  196 (409)
T ss_pred             EEEeCCcCEEEEE-------EEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHH
Confidence            4799999999999       88 9999999999999999821                                      


Q ss_pred             ----------ceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          242 ----------KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       242 ----------K~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                                .....|+||++|+|.++.++.|+.|..|++||+|.
T Consensus       197 i~~l~~~~~~~~~~~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~  241 (409)
T PRK09783        197 IRRLIATRKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQ  241 (409)
T ss_pred             HHHHHHcCCCCCcEEEECCCCeEEEEEECCCCCEECCCCeEEEEE
Confidence                      12347999999999999999999999999999984

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=98.49  E-value=2.3e-07  Score=86.44  Aligned_cols=33  Identities=24%  Similarity=0.330  Sum_probs=30.5

Q ss_pred             eEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761          245 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP  277 (277)
Q Consensus       245 ~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep  277 (277)
                      ..|+||++|+|..+.++.|+.|..|++|+.|.+
T Consensus       205 ~~I~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~  237 (334)
T TIGR00998       205 TVIRAPFDGYVARRFVQVGQVVSPGQPLMAVVP  237 (334)
T ss_pred             cEEEcCCCcEEEEEecCCCCEeCCCCeeEEEEc
Confidence            468999999999999999999999999999854

>PRK01202 glycine cleavage system protein H; Provisional

Probab=98.45  E-value=4.3e-07  Score=75.86  Aligned_cols=55  Identities=33%  Similarity=0.558  Sum_probs=49.7

Q ss_pred             ccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEE---ecCCCCccC---CCC-eEEEEcC
Q 023761          223 VKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEI---IAEDRKPVS---VDT-PLFVIEP  277 (277)
Q Consensus       223 VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~I---lVe~Gd~V~---~Gq-pL~~Iep  277 (277)
                      .++|++|++||.+|.||++|...+|.||++|+|+++   +.++.+.+.   ||+ .|++|++
T Consensus        45 p~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~~v~~  106 (127)
T PRK01202         45 PEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGWLFKIKP  106 (127)
T ss_pred             CCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEEEEEe
Confidence            468999999999999999999999999999999999   677778888   876 9999874

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=98.40  E-value=4.5e-07  Score=85.75  Aligned_cols=35  Identities=20%  Similarity=0.307  Sum_probs=32.5

Q ss_pred             CCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEc
Q 023761          199 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA  240 (277)
Q Consensus       199 ~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEa  240 (277)
                      +...|.+++.|++..       .+|++||.|++||+|+.|+.
T Consensus        47 ~~v~v~~~v~G~V~~-------v~V~~G~~VkkGq~L~~ld~   81 (346)
T PRK10476         47 DVVHVASEVGGRIVE-------LAVTENQAVKKGDLLFRIDP   81 (346)
T ss_pred             eeEEEcccCceEEEE-------EEeCCCCEEcCCCEEEEECc
Confidence            456899999999999       99999999999999999976

>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit

Probab=98.30  E-value=8.9e-07  Score=81.08  Aligned_cols=69  Identities=30%  Similarity=0.356  Sum_probs=61.2

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccce-------------------------------------
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKL-------------------------------------  243 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~-------------------------------------  243 (277)
                      ..|.+|..|++..       ++|++||.|++||+|+.|+...+                                     
T Consensus        27 ~~v~a~~~G~V~~-------i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~   99 (322)
T TIGR01730        27 ADLAAEVAGKITK-------ISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAV   99 (322)
T ss_pred             EEEEccccEEEEE-------EEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence            4799999999999       99999999999999999964211                                     


Q ss_pred             ----------------------------------eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          244 ----------------------------------MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       244 ----------------------------------~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                                                        ...|+||++|+|..+.++.|+.|..|++|+.|.
T Consensus       100 s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~  166 (322)
T TIGR01730       100 SQADLDDAKAAVEAAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIV  166 (322)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCceeCCCCcEEEEE
Confidence                                              236899999999999999999999999999874

This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.

>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional

Probab=98.28  E-value=1.5e-06  Score=81.75  Aligned_cols=70  Identities=17%  Similarity=0.197  Sum_probs=61.5

Q ss_pred             CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccce------------------------------------
Q 023761          200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKL------------------------------------  243 (277)
Q Consensus       200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~------------------------------------  243 (277)
                      ...|.++..|++..       ++|++||.|++||+|+.|+...+                                    
T Consensus        47 ~v~i~~~v~G~V~~-------v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~ai  119 (310)
T PRK10559         47 VVAIAPDVSGLITQ-------VNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAM  119 (310)
T ss_pred             EEEEccCCceEEEE-------EEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            45799999999999       99999999999999999975210                                    


Q ss_pred             ----------------------------------eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          244 ----------------------------------MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       244 ----------------------------------~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                                                        ...|+||++|+|.++.++.|+.|..|++|+.|-
T Consensus       120 S~~~~d~a~~~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~Iv  186 (310)
T PRK10559        120 SREEIDQANNVLQTVLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVALV  186 (310)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCEecCCCeeEEEE
Confidence                                              246789999999999999999999999999863

>PRK15136 multidrug efflux system protein EmrA; Provisional

Probab=98.22  E-value=1.5e-06  Score=84.21  Aligned_cols=32  Identities=19%  Similarity=0.260  Sum_probs=30.0

Q ss_pred             eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          245 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       245 ~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ..|+||++|+|..+.++.|+.|..|++||.|-
T Consensus       216 t~I~AP~dG~V~~~~v~~G~~V~~g~pl~~Iv  247 (390)
T PRK15136        216 TKIVSPMTGYVSRRSVQVGAQISPTTPLMAVV  247 (390)
T ss_pred             CEEECCCCeEEEEEecCCCCEeCCCCeEEEEE
Confidence            36999999999999999999999999999985

>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed

Probab=98.21  E-value=2.3e-06  Score=82.21  Aligned_cols=70  Identities=24%  Similarity=0.346  Sum_probs=60.4

Q ss_pred             CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccce------------------------------------
Q 023761          200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKL------------------------------------  243 (277)
Q Consensus       200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~------------------------------------  243 (277)
                      ...|.+++.|++..       ++|++||.|++||+|+.|+...+                                    
T Consensus        63 ~~~l~~~v~G~V~~-------v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~  135 (385)
T PRK09578         63 QAEVRARVAGIVTA-------RTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRA  135 (385)
T ss_pred             EEEEeccCcEEEEE-------EECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            45799999999999       99999999999999999975311                                    


Q ss_pred             -----------------------------------eeEEecCCCeEEEEEecCCCCccCCC--CeEEEEc
Q 023761          244 -----------------------------------MNEIEADRSGTIVEIIAEDRKPVSVD--TPLFVIE  276 (277)
Q Consensus       244 -----------------------------------~~eI~Ap~sG~V~~IlVe~Gd~V~~G--qpL~~Ie  276 (277)
                                                         ...|+||++|+|.+++++.|+.|..|  ++|+.|.
T Consensus       136 iS~~~~~~~~~~~~~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~  205 (385)
T PRK09578        136 VSERDYTEAVADERQAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVE  205 (385)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCeecCCCCcceEEEE
Confidence                                               24688999999999999999999885  5898873

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=98.18  E-value=3e-06  Score=79.62  Aligned_cols=32  Identities=22%  Similarity=0.353  Sum_probs=29.9

Q ss_pred             eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          245 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       245 ~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ..|+||++|+|..+.++.|+.|..|++|+.|.
T Consensus       204 ~~I~AP~dG~V~~~~~~~G~~V~~G~~l~~I~  235 (331)
T PRK03598        204 TELIAPSDGTILTRAVEPGTMLNAGSTVFTLS  235 (331)
T ss_pred             CEEECCCCeEEEeccCCCCCCcCCCCeEEEEe
Confidence            46889999999999999999999999999885

>PRK15030 multidrug efflux system transporter AcrA; Provisional

Probab=98.17  E-value=3.2e-06  Score=81.79  Aligned_cols=70  Identities=16%  Similarity=0.243  Sum_probs=60.0

Q ss_pred             CCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccce-----------------------------------
Q 023761          199 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKL-----------------------------------  243 (277)
Q Consensus       199 ~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~-----------------------------------  243 (277)
                      ....|.+.+.|++..       ++|++||.|++||+|+.|+...+                                   
T Consensus        64 ~~~~l~a~vsG~V~~-------v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g  136 (397)
T PRK15030         64 RIAEVRPQVSGIILK-------RNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQ  136 (397)
T ss_pred             EEEEEEecCcEEEEE-------EEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            345799999999999       99999999999999999974211                                   


Q ss_pred             ------------------------------------eeEEecCCCeEEEEEecCCCCccCCCCe--EEEE
Q 023761          244 ------------------------------------MNEIEADRSGTIVEIIAEDRKPVSVDTP--LFVI  275 (277)
Q Consensus       244 ------------------------------------~~eI~Ap~sG~V~~IlVe~Gd~V~~Gqp--L~~I  275 (277)
                                                          ...|+||++|+|.++.++.|+.|..|++  |+.|
T Consensus       137 ~is~~~~d~a~~~~~~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i  206 (397)
T PRK15030        137 YISKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATV  206 (397)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCEECCCCCceEEEE
Confidence                                                2457899999999999999999999985  7766

>cd06848 GCS_H Glycine cleavage H-protein

Probab=98.13  E-value=4.1e-06  Score=66.20  Aligned_cols=56  Identities=21%  Similarity=0.293  Sum_probs=47.6

Q ss_pred             cCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCc
Q 023761          204 KCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKP  265 (277)
Q Consensus       204 ~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~  265 (277)
                      ...+.|.+..-      ++.++|+.|++||.||.||++|...+|.||.+|+|.+++.+.++.
T Consensus        24 ~~~~lG~i~~i------~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~   79 (96)
T cd06848          24 AQDLLGDIVFV------ELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDN   79 (96)
T ss_pred             HHhhCCCEEEE------EecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcC
Confidence            34467776661      467779999999999999999999999999999999999887764

Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.

>PRK09859 multidrug efflux system protein MdtE; Provisional

Probab=98.13  E-value=3.8e-06  Score=80.76  Aligned_cols=69  Identities=14%  Similarity=0.238  Sum_probs=59.9

Q ss_pred             CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccc-------------------------------------
Q 023761          200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK-------------------------------------  242 (277)
Q Consensus       200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK-------------------------------------  242 (277)
                      ...|.+++.|++.+       ++|++||.|++||+|+.|+...                                     
T Consensus        61 ~~~l~~~v~G~V~~-------i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~  133 (385)
T PRK09859         61 VAEIRPQVGGIIIK-------RNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNY  133 (385)
T ss_pred             EEEEeccCcEEEEE-------EEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            34799999999999       9999999999999999997420                                     


Q ss_pred             ----------------------------------eeeEEecCCCeEEEEEecCCCCccCCCC--eEEEE
Q 023761          243 ----------------------------------LMNEIEADRSGTIVEIIAEDRKPVSVDT--PLFVI  275 (277)
Q Consensus       243 ----------------------------------~~~eI~Ap~sG~V~~IlVe~Gd~V~~Gq--pL~~I  275 (277)
                                                        -...|+||++|+|.+++++.|+.|..|+  +|+.|
T Consensus       134 is~~~~d~a~~~~~~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i  202 (385)
T PRK09859        134 VSRQDYDTARTQLNEAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTV  202 (385)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCeECCCCCcceEEE
Confidence                                              1247899999999999999999999985  68876

>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]

Probab=98.12  E-value=3.6e-06  Score=92.01  Aligned_cols=71  Identities=24%  Similarity=0.416  Sum_probs=65.9

Q ss_pred             CCCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          198 SSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       198 ~~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      .+...+++|.+|++.+       +.|+.|+.|.+||.-++||.|||.+++.+..+|+|. ...++|+.+++|+.|+.+.
T Consensus       683 nDpt~LrsPs~GKLl~-------ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i~-~i~~~G~~i~aG~vlakL~  753 (2196)
T KOG0368|consen  683 NDPTVLRSPSPGKLLQ-------YLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRIQ-LIKQEGDAIEAGSVLAKLT  753 (2196)
T ss_pred             CCcceecCCCCccceE-------EEecCCCceecCCeeeehehhheeeeeeccCCceEE-EecCCCCccCccceeEEee
Confidence            3455899999999999       999999999999999999999999999999999776 7889999999999999874

>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family

Probab=98.09  E-value=1.3e-05  Score=74.52  Aligned_cols=65  Identities=20%  Similarity=0.291  Sum_probs=59.1

Q ss_pred             CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761          200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP  277 (277)
Q Consensus       200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep  277 (277)
                      ...|+||..|.|..        +++.||.|+|||+|+.|+.    .+|+||.+|+|. =++.+|-.|..|.-|..|.|
T Consensus       164 Er~IrAp~~Gi~~~--------~~~IGd~V~KGqvLa~I~~----~~V~APidGIVr-GlirdG~~V~~G~Ki~dIDP  228 (256)
T TIGR03309       164 ERVLRAPADGIVTP--------TKAIGDSVKKGDVIATVGD----VPVVAPIDGLLR-GLIHEGLTVTEGLKIGDVDP  228 (256)
T ss_pred             eEEEECCCCeEEee--------ccCCCCEEeCCCEEEEEcC----EEEEccCCeEEE-EEecCCCCcCCCCEEEEECC
Confidence            35899999999987        8999999999999999985    799999999776 66789999999999999976

Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.

>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial

Probab=98.03  E-value=7.2e-06  Score=67.25  Aligned_cols=55  Identities=25%  Similarity=0.418  Sum_probs=43.6

Q ss_pred             cccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCC---cc---CCCC-eEEEEc
Q 023761          222 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK---PV---SVDT-PLFVIE  276 (277)
Q Consensus       222 ~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd---~V---~~Gq-pL~~Ie  276 (277)
                      +-++|+.|++||.||.||++|...+|.||++|+|++++.+..+   .+   .||+ -|++|+
T Consensus        37 lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~~~P~lln~~py~~gWl~~v~   98 (110)
T TIGR03077        37 LPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALEDDTQPINHSPESEGWFVVVQ   98 (110)
T ss_pred             CCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhhChHhhcCCCCCCceEEEEE
Confidence            3478999999999999999999999999999999999654443   33   2433 566654

The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.

>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]

Probab=98.02  E-value=2.7e-06  Score=81.97  Aligned_cols=56  Identities=29%  Similarity=0.380  Sum_probs=54.8

Q ss_pred             CcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          221 PFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       221 ~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      |||++||.|.+-|.||+++.+|...+|.+-++|+|.+|.-+.+|....|++|..++
T Consensus        84 WfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddia~VGk~Lvd~e  139 (474)
T KOG0558|consen   84 WFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDIAKVGKPLVDLE  139 (474)
T ss_pred             ehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhhhHhCcceeeee
Confidence            99999999999999999999999999999999999999999999999999999875

>TIGR00527 gcvH glycine cleavage system H protein

Probab=98.01  E-value=9.6e-06  Score=67.83  Aligned_cols=49  Identities=33%  Similarity=0.430  Sum_probs=41.5

Q ss_pred             CCCCCCcc---cCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCC
Q 023761          216 APGEPPFV---KVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK  264 (277)
Q Consensus       216 ~p~~~~~V---kvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd  264 (277)
                      ..+.-.||   ++|++|++||.+|.||+||...+|.||++|+|++++-..-+
T Consensus        34 ~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~   85 (127)
T TIGR00527        34 ELGDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDALED   85 (127)
T ss_pred             CCCCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHhhhh
Confidence            34444555   58999999999999999999999999999999998865544

The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.

>PRK11578 macrolide transporter subunit MacA; Provisional

Probab=97.99  E-value=1.1e-05  Score=77.13  Aligned_cols=34  Identities=26%  Similarity=0.444  Sum_probs=31.5

Q ss_pred             CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEc
Q 023761          200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA  240 (277)
Q Consensus       200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEa  240 (277)
                      ...|.+++.|.+..       ++|++||.|++||+|+.|+.
T Consensus        61 ~~~l~a~~~G~V~~-------v~v~~G~~V~kG~~L~~ld~   94 (370)
T PRK11578         61 KVDVGAQVSGQLKT-------LSVAIGDKVKKDQLLGVIDP   94 (370)
T ss_pred             EEEEecccceEEEE-------EEcCCCCEEcCCCEEEEECc
Confidence            34799999999999       99999999999999999986

>PRK11556 multidrug efflux system subunit MdtA; Provisional

Probab=97.96  E-value=1.1e-05  Score=78.77  Aligned_cols=70  Identities=19%  Similarity=0.248  Sum_probs=60.1

Q ss_pred             CCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccc------------------------------------
Q 023761          199 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK------------------------------------  242 (277)
Q Consensus       199 ~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK------------------------------------  242 (277)
                      +...|.+++.|++..       +++++||.|++||+|+.|+...                                    
T Consensus        86 ~~v~v~~~vsG~V~~-------i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g  158 (415)
T PRK11556         86 NTVTVRSRVDGQLMA-------LHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTN  158 (415)
T ss_pred             eEEEEEccccEEEEE-------EECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            456899999999999       9999999999999999996421                                    


Q ss_pred             -----------------------------------eeeEEecCCCeEEEEEecCCCCccCCCC--eEEEE
Q 023761          243 -----------------------------------LMNEIEADRSGTIVEIIAEDRKPVSVDT--PLFVI  275 (277)
Q Consensus       243 -----------------------------------~~~eI~Ap~sG~V~~IlVe~Gd~V~~Gq--pL~~I  275 (277)
                                                         -...|+||++|+|..+.++.|+.|..|+  +|+.|
T Consensus       159 ~is~~~ld~~~~~~~~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~V~~g~~~~l~~i  228 (415)
T PRK11556        159 LVSRQELDAQQALVSETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVI  228 (415)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCceecCCCCceeEEE
Confidence                                               0236899999999999999999999984  67765

>PRK13380 glycine cleavage system protein H; Provisional

Probab=97.96  E-value=6.8e-06  Score=70.25  Aligned_cols=58  Identities=22%  Similarity=0.332  Sum_probs=49.4

Q ss_pred             CCCccCCccEEEEecCCCCCCCcc-cCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCC
Q 023761          200 LPPLKCPMAGTFYRSPAPGEPPFV-KVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK  264 (277)
Q Consensus       200 ~~~I~APm~G~~~~sp~p~~~~~V-kvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd  264 (277)
                      .......+.|.+..       +-+ ++|++|++||.++.||+||+..+|.||++|+|++++.+-.+
T Consensus        35 itd~aq~~lG~I~~-------v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~~   93 (144)
T PRK13380         35 ITDYAQTMAGDVVF-------VRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALED   93 (144)
T ss_pred             cCHHHHHhcCCEEE-------EEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhhh
Confidence            34566678888877       555 48999999999999999999999999999999999987554

>PRK00624 glycine cleavage system protein H; Provisional

Probab=97.88  E-value=2.3e-05  Score=64.63  Aligned_cols=55  Identities=27%  Similarity=0.463  Sum_probs=43.1

Q ss_pred             cccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEe---cCCCCcc---CCCC-eEEEEc
Q 023761          222 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEII---AEDRKPV---SVDT-PLFVIE  276 (277)
Q Consensus       222 ~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~Il---Ve~Gd~V---~~Gq-pL~~Ie  276 (277)
                      +-++|+.|++||.||.||++|...+|.||++|+|.+++   .++-+.+   .||+ -|++|+
T Consensus        39 lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~P~lln~dpy~~gWl~~v~  100 (114)
T PRK00624         39 LPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVNTALEDDIQPINNAPESEGWFVVVQ  100 (114)
T ss_pred             CCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhhChHhhcCCCCCCceEEEEE
Confidence            34789999999999999999999999999999999994   4443443   2333 555554

>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C

Probab=97.83  E-value=1.1e-05  Score=74.03  Aligned_cols=33  Identities=36%  Similarity=0.584  Sum_probs=23.9

Q ss_pred             CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEc
Q 023761          200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA  240 (277)
Q Consensus       200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEa  240 (277)
                      ...|.++..|++ .       ++|++||+|++||+|+.|+.
T Consensus        21 ~~~v~~~~~G~v-~-------~~v~~G~~V~kG~~L~~ld~   53 (328)
T PF12700_consen   21 EVSVSAPVSGRV-S-------VNVKEGDKVKKGQVLAELDS   53 (328)
T ss_dssp             EEEE--SS-EEE-E-------E-S-TTSEEETT-EEEEEE-
T ss_pred             EEEEECCCCEEE-E-------EEeCCcCEECCCCEEEEEEC
Confidence            357999999999 9       99999999999999999964

...

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=97.82  E-value=4.1e-05  Score=71.51  Aligned_cols=35  Identities=31%  Similarity=0.505  Sum_probs=31.7

Q ss_pred             CCCccCCcc---EEEEecCCCCCCCcccCCCEEecCCeEEEEEcc
Q 023761          200 LPPLKCPMA---GTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM  241 (277)
Q Consensus       200 ~~~I~APm~---G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEam  241 (277)
                      ...|.++..   |++.+       ++|++||.|++||+|+.|+..
T Consensus        13 ~~~v~~~~~~~~G~V~~-------i~V~eG~~V~~G~~L~~ld~~   50 (327)
T TIGR02971        13 VVAVAAPSSGGTDRIKK-------LLVAEGDRVQAGQVLAELDSR   50 (327)
T ss_pred             eEEecCCCCCCCcEEEE-------EEccCCCEecCCcEEEEecCc
Confidence            447899999   99999       999999999999999999863

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like

Probab=97.75  E-value=2.7e-05  Score=54.90  Aligned_cols=37  Identities=30%  Similarity=0.598  Sum_probs=33.2

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcccee
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLM  244 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~  244 (277)
                      ..|.+|+.|++..       ++|++||.|++||+|+.|+...+.
T Consensus         3 ~~I~~~~~G~V~~-------v~V~~G~~VkkGd~L~~ld~~~~~   39 (50)
T PF13533_consen    3 VTIQAPVSGRVES-------VYVKEGQQVKKGDVLLVLDSPDLQ   39 (50)
T ss_pred             EEEeCCCCEEEEE-------EEecCCCEEcCCCEEEEECcHHHH
Confidence            3689999999999       999999999999999999876544

>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like

Probab=97.74  E-value=5.8e-05  Score=53.18  Aligned_cols=33  Identities=21%  Similarity=0.357  Sum_probs=30.7

Q ss_pred             eEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761          245 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP  277 (277)
Q Consensus       245 ~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep  277 (277)
                      ..|.++++|+|.+++|++|+.|..|++|++|..
T Consensus         3 ~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~   35 (50)
T PF13533_consen    3 VTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDS   35 (50)
T ss_pred             EEEeCCCCEEEEEEEecCCCEEcCCCEEEEECc
Confidence            568999999999999999999999999999863

>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=97.55  E-value=0.00033  Score=65.98  Aligned_cols=66  Identities=20%  Similarity=0.260  Sum_probs=56.6

Q ss_pred             CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEc---cceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 023761          200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA---MKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI  275 (277)
Q Consensus       200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEa---mK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~I  275 (277)
                      ...|+||..|.|+.        .++.||.|++||+|+.|=.   .....+|+||.+|+|..+.  ..-.|..|+.|+.|
T Consensus       229 ~~~v~A~~~Gl~~~--------~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~~--~~p~v~~G~~l~~i  297 (298)
T cd06253         229 VVYVNAETSGIFVP--------AKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTLR--EYPLVYEGSLVARI  297 (298)
T ss_pred             eEEEEcCCCeEEEE--------CcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEee--cCCeecCCceEEEe
Confidence            45899999999987        7999999999999998855   3457789999999997654  66889999999987

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=97.54  E-value=0.0002  Score=68.17  Aligned_cols=34  Identities=32%  Similarity=0.474  Sum_probs=30.5

Q ss_pred             CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEc
Q 023761          200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA  240 (277)
Q Consensus       200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEa  240 (277)
                      ...|.++..|++..       ++|++||.|++||+|+.|+.
T Consensus        43 ~~~v~~~~~G~v~~-------i~V~eG~~V~kG~~L~~ld~   76 (423)
T TIGR01843        43 VKVVQHLEGGIVRE-------ILVREGDRVKAGQVLVELDA   76 (423)
T ss_pred             eeecccCCCcEEEE-------EEeCCCCEecCCCeEEEEcc
Confidence            34688999999999       99999999999999999853

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=97.40  E-value=0.00069  Score=63.27  Aligned_cols=65  Identities=29%  Similarity=0.437  Sum_probs=54.3

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcc--ceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM--KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI  275 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEam--K~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~I  275 (277)
                      ..|+||..|.|+.        .++.||.|++||+|+.|-..  ....+|+||.+|+|..+  ...-.|..|+.|+.|
T Consensus       220 ~~v~A~~~G~~~~--------~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~--~~~~~v~~G~~l~~i  286 (287)
T cd06251         220 VWVRAPQGGLLRS--------LVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGR--NNLPLVNEGDALFHI  286 (287)
T ss_pred             eEEecCCCeEEEE--------ecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEe--cCCCccCCCCEEEEe
Confidence            4799999999986        89999999999999999652  23478999999999544  466778999999876

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=97.39  E-value=0.00071  Score=64.08  Aligned_cols=66  Identities=27%  Similarity=0.245  Sum_probs=55.3

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcc----ceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM----KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEam----K~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ..|+||..|.|+.        +++.||.|++||+|+.|-..    ....+|+||.+|+|.-+.  ..-.|..|+.|+.|-
T Consensus       245 ~~v~A~~~G~~~~--------~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~~--~~~~v~~G~~l~~i~  314 (316)
T cd06252         245 CYVFAPHPGLFEP--------LVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAARR--PPGLVRRGDCLAVLA  314 (316)
T ss_pred             EEEEcCCCeEEEE--------ecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEee--CCCccCCCCEEEEEe
Confidence            5799999999986        89999999999999998653    456789999999997554  446688999998874

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PRK12784 hypothetical protein; Provisional

Probab=97.36  E-value=0.00073  Score=52.54  Aligned_cols=68  Identities=19%  Similarity=0.195  Sum_probs=63.2

Q ss_pred             CccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccce-eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKL-MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~-~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      .|.||.-|++..       +||.+++.|-+=+.|+.|+.|.- +..|.-.++|.|.-+.|+.||.|..+..|+.++
T Consensus         7 ~iyS~~~G~Vek-------ifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~e   75 (84)
T PRK12784          7 EICSSYEGKVEE-------IFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLE   75 (84)
T ss_pred             hhcCccccEEEE-------EEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEe
Confidence            689999999999       99999999999999999999874 455788999999999999999999999999986

>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases

Probab=97.31  E-value=0.00071  Score=65.46  Aligned_cols=66  Identities=27%  Similarity=0.242  Sum_probs=53.9

Q ss_pred             CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcc----ceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 023761          200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM----KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI  275 (277)
Q Consensus       200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEam----K~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~I  275 (277)
                      ...|+||..|.|+.        .++.||.|++||+|+.|-.-    ....+|+||.+|+|..+.  ..-.|..|+.|+.|
T Consensus       289 ~~~v~Ap~~Gl~~~--------~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~~~--~~~~V~~G~~l~~I  358 (359)
T cd06250         289 VEMLYAPAGGMVVY--------RAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFARA--SRRFVRAGDELAKI  358 (359)
T ss_pred             cEEEeCCCCeEEEE--------ecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEEec--CCccccCCCeEEEe
Confidence            45799999999986        89999999999999988441    223336999999986544  77889999999987

This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding

>TIGR02994 ectoine_eutE ectoine utilization protein EutE

Probab=97.27  E-value=0.0011  Score=63.55  Aligned_cols=65  Identities=18%  Similarity=0.169  Sum_probs=55.5

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcc----ceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM----KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI  275 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEam----K~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~I  275 (277)
                      ..|+||..|.|+.        .++.||.|++||+|+.|=..    ....+|+||.+|+|..+.  ..-.|..|+.|+.|
T Consensus       256 ~~v~Ap~~Gi~~~--------~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~~--~~~~V~~Gd~l~~i  324 (325)
T TIGR02994       256 CFIFAEDDGLIEF--------MIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAARH--FPGLIKSGDCIAVL  324 (325)
T ss_pred             eEEEcCCCeEEEE--------ecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEEe--CCCccCCCCEEEEe
Confidence            4799999999986        89999999999999988552    356789999999997754  66789999999876

Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.

>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional

Probab=97.24  E-value=0.00043  Score=51.59  Aligned_cols=33  Identities=12%  Similarity=0.426  Sum_probs=30.5

Q ss_pred             eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          244 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       244 ~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      +..|+||++|+|.+++++.||.|+.||+|+.++
T Consensus         2 ~~~v~a~~~G~i~~~~v~~Gd~V~~g~~l~~ve   34 (71)
T PRK05889          2 AEDVRAEIVASVLEVVVNEGDQIGKGDTLVLLE   34 (71)
T ss_pred             CcEEeCCCCEEEEEEEeCCCCEECCCCEEEEEE
Confidence            346999999999999999999999999999886

>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain

Probab=97.17  E-value=0.0011  Score=53.59  Aligned_cols=40  Identities=45%  Similarity=0.612  Sum_probs=35.3

Q ss_pred             CCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEec
Q 023761          220 PPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIA  260 (277)
Q Consensus       220 ~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlV  260 (277)
                      .+.|++||+|++||.|+..+. -+...|.|+++|+|.+|.-
T Consensus        43 ~p~V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I~~   82 (101)
T PF13375_consen   43 EPVVKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAIEK   82 (101)
T ss_pred             eEEEcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEEee
Confidence            389999999999999999875 5678999999999998763

>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes

Probab=97.13  E-value=0.00093  Score=55.40  Aligned_cols=41  Identities=34%  Similarity=0.515  Sum_probs=33.4

Q ss_pred             cccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCC
Q 023761          222 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAED  262 (277)
Q Consensus       222 ~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~  262 (277)
                      +-++|++|++|+.++.||+.|...++.+|++|+|++++-+-
T Consensus        38 lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~~l   78 (122)
T PF01597_consen   38 LPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNEEL   78 (122)
T ss_dssp             -B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-GHH
T ss_pred             EccCCCEEecCCcEEEEEECceeeecccceEEEEEEEcccc
Confidence            45789999999999999999999999999999999997543

GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....

>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]

Probab=97.09  E-value=0.00067  Score=65.81  Aligned_cols=34  Identities=26%  Similarity=0.357  Sum_probs=30.1

Q ss_pred             eeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761          244 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP  277 (277)
Q Consensus       244 ~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep  277 (277)
                      ...|+||++|+|.++.+..|+.|..|++||.+-|
T Consensus       208 ~T~IrAP~dG~V~~~~v~~G~~V~~G~~l~alVp  241 (352)
T COG1566         208 RTVIRAPVDGYVTNLSVRVGQYVSAGTPLMALVP  241 (352)
T ss_pred             CCEEECCCCceEEeecccCCCeecCCCceEEEec
Confidence            3447799999999999999999999999998754

>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]

Probab=97.05  E-value=0.00071  Score=57.27  Aligned_cols=43  Identities=28%  Similarity=0.458  Sum_probs=38.9

Q ss_pred             cccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCC
Q 023761          222 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK  264 (277)
Q Consensus       222 ~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd  264 (277)
                      +-++|+.|++|+.+|.||+.|...+|.||++|+|++++-+.-+
T Consensus        46 lpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN~~l~~   88 (131)
T COG0509          46 LPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVNEALVD   88 (131)
T ss_pred             cCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEechhhhc
Confidence            5689999999999999999999999999999999999855443

>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=97.01  E-value=0.0019  Score=60.26  Aligned_cols=65  Identities=31%  Similarity=0.478  Sum_probs=51.5

Q ss_pred             CCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEc--cceeeEEecCCCeEEEEEecCCCCccCCCCeEE
Q 023761          199 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA--MKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLF  273 (277)
Q Consensus       199 ~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEa--mK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~  273 (277)
                      ....++||..|.|+.        +++.||.|++||+|+.|=.  .....+|+||++|+|.-+.  ..-.|..|+.|+
T Consensus       222 ~~~~v~Ap~~G~~~~--------~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~--~~~~v~~G~~l~  288 (288)
T cd06254         222 DVYYVTSPASGLWYP--------FVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNT--ATLPVRKGDPLA  288 (288)
T ss_pred             CCEEEecCCCeEEEE--------ecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEee--CCCccCCCCccC
Confidence            345899999999986        8899999999999998843  3456789999999997655  345666777653

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PRK06748 hypothetical protein; Validated

Probab=96.82  E-value=0.0022  Score=50.26  Aligned_cols=33  Identities=15%  Similarity=0.174  Sum_probs=30.8

Q ss_pred             eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          244 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       244 ~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ..-|+||..|+|.++++++||.|+.||+|+.|+
T Consensus         4 ~~~v~sp~~G~I~~w~vk~GD~V~~gd~l~~IE   36 (83)
T PRK06748          4 IEGVYSPCYGKVEKLFVRESSYVYEWEKLALIE   36 (83)
T ss_pred             eeEEecCCcEEEEEEEeCCCCEECCCCEEEEEE
Confidence            456899999999999999999999999999987

>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=96.81  E-value=0.0019  Score=47.70  Aligned_cols=33  Identities=18%  Similarity=0.356  Sum_probs=30.7

Q ss_pred             eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          244 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       244 ~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      |..|.||..|+|.+++++.||.|+.|++|+.|+
T Consensus         1 ~~~i~a~~~G~i~~~~v~~G~~V~~g~~l~~ve   33 (70)
T PRK08225          1 MTKVYASMAGNVWKIVVKVGDTVEEGQDVVILE   33 (70)
T ss_pred             CCeEeCCCCEEEEEEEeCCCCEECCCCEEEEEE
Confidence            457899999999999999999999999999986

>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

Probab=96.54  E-value=0.0031  Score=44.74  Aligned_cols=30  Identities=30%  Similarity=0.577  Sum_probs=28.6

Q ss_pred             EecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          247 IEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       247 I~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      |+||++|+|.+++++.|+.|+.|++|+.|+
T Consensus         2 v~a~~~G~v~~~~v~~G~~v~~g~~l~~i~   31 (67)
T cd06850           2 VTAPMPGTVVKVLVKEGDKVEAGQPLAVLE   31 (67)
T ss_pred             ccCCccEEEEEEEeCCCCEECCCCEEEEEE
Confidence            789999999999999999999999999986

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.

>COG3608 Predicted deacylase [General function prediction only]

Probab=96.36  E-value=0.0098  Score=57.41  Aligned_cols=65  Identities=29%  Similarity=0.330  Sum_probs=50.4

Q ss_pred             CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcc---ceeeEEecCCCeEEEEEecCCCCccCCCCeEEE
Q 023761          200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM---KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFV  274 (277)
Q Consensus       200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEam---K~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~  274 (277)
                      ...|+||-.|.|.-        .|+.||.|++||+|+.|-.+   +...+|+|+++|+|..+.  ---.|+.|+.|+.
T Consensus       256 ~~~i~Ap~~G~v~~--------~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r--~~~~v~~Gdl~~~  323 (331)
T COG3608         256 DEMIRAPAGGLVEF--------LVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARR--SLRLVQPGDLLKV  323 (331)
T ss_pred             cceeecCCCceEEE--------eecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEe--eccccCCCCeeee
Confidence            34699999998865        89999999999999998765   678899999999998764  2233444444443

>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=96.17  E-value=0.016  Score=54.45  Aligned_cols=51  Identities=24%  Similarity=0.279  Sum_probs=43.1

Q ss_pred             CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcc--ceeeEEecCCCeEEEEE
Q 023761          200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM--KLMNEIEADRSGTIVEI  258 (277)
Q Consensus       200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEam--K~~~eI~Ap~sG~V~~I  258 (277)
                      ...|+||..|.|+.        .++.|+.|++||+|+.|-..  ....+++||.+|+|..+
T Consensus       231 ~~~v~Ap~~Gi~~~--------~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~  283 (293)
T cd06255         231 RDWVAAIHGGLFEP--------SVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI  283 (293)
T ss_pred             eEEEecCCCeEEEE--------ecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence            45899999999986        79999999999999998542  23567899999999876

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]

Probab=95.97  E-value=0.0088  Score=50.70  Aligned_cols=34  Identities=21%  Similarity=0.220  Sum_probs=31.7

Q ss_pred             eeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          243 LMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       243 ~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      -...|+||..|++.+++|+.||.|..||.|+.||
T Consensus        69 ~~~~V~SPm~Gtv~~~~V~vGd~V~~Gq~l~IiE  102 (140)
T COG0511          69 GGTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIE  102 (140)
T ss_pred             cCceEecCcceEEEEEeeccCCEEcCCCEEEEEE
Confidence            4567999999999999999999999999999986

>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=95.88  E-value=0.012  Score=49.71  Aligned_cols=33  Identities=21%  Similarity=0.500  Sum_probs=30.6

Q ss_pred             eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          244 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       244 ~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ...|.||.+|+|.+|++++||.|+.||+|+.|+
T Consensus        61 ~~~v~Ap~~G~V~~i~V~~Gd~V~~Gq~L~~lE   93 (130)
T PRK06549         61 ADAMPSPMPGTILKVLVAVGDQVTENQPLLILE   93 (130)
T ss_pred             CcEEECCCCEEEEEEEeCCCCEECCCCEEEEEe
Confidence            456899999999999999999999999999986

>PRK07051 hypothetical protein; Validated

Probab=95.87  E-value=0.0093  Score=45.59  Aligned_cols=32  Identities=34%  Similarity=0.475  Sum_probs=30.0

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEE
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIE  239 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IE  239 (277)
                      ..|++|..|++.+       +++++||.|+.||+|+.|+
T Consensus        48 ~~i~a~~~G~v~~-------i~~~~G~~V~~G~~l~~i~   79 (80)
T PRK07051         48 TEVEAEAAGRVVE-------FLVEDGEPVEAGQVLARIE   79 (80)
T ss_pred             EEEeCCCCEEEEE-------EEcCCcCEECCCCEEEEEe
Confidence            4699999999999       9999999999999999986

>PRK09439 PTS system glucose-specific transporter subunit; Provisional

Probab=95.83  E-value=0.021  Score=50.28  Aligned_cols=65  Identities=28%  Similarity=0.379  Sum_probs=50.8

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCCEEec----CCeEEEEEccceeeEEecCCCeEEE--------------------
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQK----GQVLCIIEAMKLMNEIEADRSGTIV--------------------  256 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~k----GqvL~~IEamK~~~eI~Ap~sG~V~--------------------  256 (277)
                      ..|.||+.|++..        +-++-|.|=.    |+-++++-.   ...|.||++|+|.                    
T Consensus        21 ~~i~aP~~G~vi~--------L~~V~D~vFs~k~mGdGvAI~P~---~~~v~AP~dG~V~~vf~T~HAigi~t~~G~eiL   89 (169)
T PRK09439         21 IEIIAPLSGEIVN--------IEDVPDVVFAEKIVGDGIAIKPT---GNKMVAPVDGTIGKIFETNHAFSIESDSGVELF   89 (169)
T ss_pred             eEEEecCCeEEEE--------hHHCCChHhcccCccceEEEEcc---CCEEEecCCeEEEEEcCCCCEEEEEeCCCcEEE
Confidence            4689999999987        5666776655    777776543   3678889888887                    


Q ss_pred             ---------------EEecCCCCccCCCCeEEEEc
Q 023761          257 ---------------EIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       257 ---------------~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                                     +.+++.||.|..||+|+++.
T Consensus        90 IHiGiDTV~L~G~gF~~~Vk~Gd~Vk~G~~L~~~D  124 (169)
T PRK09439         90 VHFGIDTVELKGEGFKRIAEEGQRVKVGDPIIEFD  124 (169)
T ss_pred             EEEeecccccCCCceEEEecCCCEEeCCCEEEEEc
Confidence                           56788999999999999874

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=95.68  E-value=0.019  Score=54.47  Aligned_cols=40  Identities=28%  Similarity=0.485  Sum_probs=35.2

Q ss_pred             EEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761          236 CIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP  277 (277)
Q Consensus       236 ~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep  277 (277)
                      +.|++.  ...|.++++|+|.+++|++||.|..||+|++|.+
T Consensus        42 ~~v~~~--~v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld~   81 (346)
T PRK10476         42 AYIDAD--VVHVASEVGGRIVELAVTENQAVKKGDLLFRIDP   81 (346)
T ss_pred             eEEEee--eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECc
Confidence            556653  6789999999999999999999999999999864

>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid

Probab=95.66  E-value=0.013  Score=44.02  Aligned_cols=32  Identities=34%  Similarity=0.472  Sum_probs=27.4

Q ss_pred             eEEecCCCeEEEE------EecCCCCccCCCCeEEEEc
Q 023761          245 NEIEADRSGTIVE------IIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       245 ~eI~Ap~sG~V~~------IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      .+|++|.-|...+      +++++||.|..||+|+.|+
T Consensus         1 ~~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~ie   38 (74)
T PF00364_consen    1 TEIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIE   38 (74)
T ss_dssp             EEEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEE
T ss_pred             CEEECCCCccEEEecceeEEEECCCCEEEcCceEEEEE
Confidence            3678888876555      9999999999999999986

Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....

>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit

Probab=95.64  E-value=0.038  Score=46.31  Aligned_cols=20  Identities=15%  Similarity=0.189  Sum_probs=17.2

Q ss_pred             EEecCCCCccCCCCeEEEEc
Q 023761          257 EIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       257 ~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      +++++.||.|..||+|+++.
T Consensus        83 ~~~vk~Gd~V~~G~~l~~~D  102 (124)
T cd00210          83 TSHVEEGQRVKQGDKLLEFD  102 (124)
T ss_pred             EEEecCCCEEcCCCEEEEEc
Confidence            56788999999999999863

The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.

>TIGR00830 PTBA PTS system, glucose subfamily, IIA component

Probab=95.55  E-value=0.037  Score=46.20  Aligned_cols=20  Identities=20%  Similarity=0.322  Sum_probs=17.5

Q ss_pred             EEecCCCCccCCCCeEEEEc
Q 023761          257 EIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       257 ~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      +++++.||.|..||+|+++.
T Consensus        83 ~~~v~~Gd~V~~G~~l~~~D  102 (121)
T TIGR00830        83 TSHVEEGQRVKKGDPLLEFD  102 (121)
T ss_pred             EEEecCCCEEcCCCEEEEEc
Confidence            67789999999999999874

These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c

>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=95.51  E-value=0.018  Score=49.79  Aligned_cols=32  Identities=28%  Similarity=0.515  Sum_probs=30.1

Q ss_pred             eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          245 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       245 ~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ..|.||..|+|.++++++||.|+.||+|+.|+
T Consensus        85 ~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iE  116 (153)
T PRK05641         85 NVVTAPMPGKILRILVREGQQVKVGQGLLILE  116 (153)
T ss_pred             CEEECCCCeEEEEEEeCCCCEEcCCCEEEEEe
Confidence            56899999999999999999999999999886

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=95.44  E-value=0.019  Score=53.50  Aligned_cols=35  Identities=20%  Similarity=0.369  Sum_probs=32.1

Q ss_pred             eeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761          243 LMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP  277 (277)
Q Consensus       243 ~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep  277 (277)
                      -...|.++.+|+|.++++++||.|..||+|++|.+
T Consensus        41 ~~~~v~a~~~G~V~~i~v~~G~~V~kGq~L~~ld~   75 (334)
T TIGR00998        41 NQLQVSSQVSGSVIEVNVDDTDYVKQGDVLVRLDP   75 (334)
T ss_pred             ceEEEcccCceEEEEEEeCCCCEEcCCCEEEEECc
Confidence            36779999999999999999999999999999864

>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3

Probab=95.43  E-value=0.044  Score=50.43  Aligned_cols=66  Identities=27%  Similarity=0.351  Sum_probs=53.7

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCCEEecCCeE--EEEEcc--ceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVL--CIIEAM--KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL--~~IEam--K~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ..+.||..|.|+.        .++.||.|++||+|  +.+-..  ....+|+||.+|+|.  .....-.|..|+.|+.|.
T Consensus       221 ~~~~a~~~G~~~~--------~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~ii--~~~~~~~v~~G~~l~~v~  290 (292)
T PF04952_consen  221 EWVRAPAGGLFEP--------EVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGIII--FIRESPYVEQGDALAKVA  290 (292)
T ss_dssp             CEEESSSSEEEEE--------TSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEEE--SECTSSECTTTEEEEEEE
T ss_pred             eeecCCccEEEEE--------eecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEEE--EeCcccccCCCCeEEEEe
Confidence            4799999999986        89999999999999  655332  344689999999995  455888899999998863

5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....

>PF13437 HlyD_3: HlyD family secretion protein

Probab=95.31  E-value=0.028  Score=43.87  Aligned_cols=33  Identities=27%  Similarity=0.393  Sum_probs=30.3

Q ss_pred             CccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcc
Q 023761          202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM  241 (277)
Q Consensus       202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEam  241 (277)
                      .|+||+.|++..       ++++.|+.|.+|+.||.|..+
T Consensus         1 ~i~AP~~G~V~~-------~~~~~G~~v~~g~~l~~i~~~   33 (105)
T PF13437_consen    1 TIRAPFDGVVVS-------INVQPGEVVSAGQPLAEIVDT   33 (105)
T ss_pred             CEECCCCEEEEE-------EeCCCCCEECCCCEEEEEEcc
Confidence            489999999999       899999999999999998764

>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry

Probab=95.25  E-value=0.012  Score=53.48  Aligned_cols=33  Identities=33%  Similarity=0.502  Sum_probs=23.4

Q ss_pred             CccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcc
Q 023761          202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM  241 (277)
Q Consensus       202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEam  241 (277)
                      .|.++..|++..       ++|++||.|++||+|+.|+..
T Consensus         3 ~Vq~~~~G~V~~-------i~V~eG~~VkkGq~L~~LD~~   35 (305)
T PF00529_consen    3 IVQSLVGGIVTE-------ILVKEGQRVKKGQVLARLDPT   35 (305)
T ss_dssp             EE--SS-EEEEE-------E-S-TTEEE-TTSECEEE--H
T ss_pred             EEeCCCCeEEEE-------EEccCcCEEeCCCEEEEEEee
Confidence            578899999999       999999999999999999864

; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=95.22  E-value=0.035  Score=54.92  Aligned_cols=41  Identities=24%  Similarity=0.319  Sum_probs=35.2

Q ss_pred             EEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761          237 IIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP  277 (277)
Q Consensus       237 ~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep  277 (277)
                      .|....-...|.++..|+|.+|+|++||.|..||+|++|.+
T Consensus        52 ~v~p~~~~~~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~   92 (457)
T TIGR01000        52 TIEPAKILSKIQSTSNNAIKENYLKENKFVKKGDLLVVYDN   92 (457)
T ss_pred             EEEecCceEEEEcCCCcEEEEEEcCCCCEecCCCEEEEECc
Confidence            44444556789999999999999999999999999999864

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria

Probab=95.15  E-value=0.044  Score=46.36  Aligned_cols=65  Identities=23%  Similarity=0.384  Sum_probs=46.0

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCCEE----ecCCeEEEEEccceeeEEecCCCeEEE--------------------
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRV----QKGQVLCIIEAMKLMNEIEADRSGTIV--------------------  256 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V----~kGqvL~~IEamK~~~eI~Ap~sG~V~--------------------  256 (277)
                      ..|.||+.|++..        +-++-|.|    --|+-++++=..   ..|.||++|+|.                    
T Consensus         3 ~~i~aPv~G~vi~--------l~~v~D~vFs~~~lG~GvaI~p~~---~~v~AP~~G~v~~i~~T~HAi~i~s~~G~eiL   71 (132)
T PF00358_consen    3 ITIYAPVSGKVIP--------LEEVPDPVFSQKMLGDGVAIIPSD---GKVYAPVDGTVTMIFPTKHAIGIRSDNGVEIL   71 (132)
T ss_dssp             EEEE-SSSEEEEE--------GGGSSSHHHHTTSSSEEEEEEESS---SEEEESSSEEEEEE-TTSSEEEEEETTSEEEE
T ss_pred             eEEEeeCCcEEEE--------hhhCCchHHCCCCCcCEEEEEcCC---CeEEEEeeEEEEEEcCCCCEEEEEeCCCCEEE
Confidence            3689999999987        44555555    236777776443   468899999887                    


Q ss_pred             ---------------EEecCCCCccCCCCeEEEEc
Q 023761          257 ---------------EIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       257 ---------------~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                                     +.+++.||.|..||+|+++.
T Consensus        72 iHiGidTv~L~G~gF~~~v~~G~~V~~G~~L~~~D  106 (132)
T PF00358_consen   72 IHIGIDTVKLNGEGFETLVKEGDKVKAGQPLIEFD  106 (132)
T ss_dssp             EE-SBSGGGGTTTTEEESS-TTSEE-TTEEEEEE-
T ss_pred             EEEccchhhcCCcceEEEEeCCCEEECCCEEEEEc
Confidence                           67788899999999999863

The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....

>PRK09859 multidrug efflux system protein MdtE; Provisional

Probab=95.08  E-value=0.035  Score=53.51  Aligned_cols=54  Identities=17%  Similarity=0.219  Sum_probs=42.5

Q ss_pred             ccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761          223 VKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP  277 (277)
Q Consensus       223 VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep  277 (277)
                      ++.|+....-+..+.|+... ...|.++++|+|.++++++|+.|..||+|++|.+
T Consensus        41 v~~~~~~~~~~~~G~v~~~~-~~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~   94 (385)
T PRK09859         41 LSPGSVNVLSELPGRTVPYE-VAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDP   94 (385)
T ss_pred             eEEEeccceEEEEEEEEEEE-EEEEeccCcEEEEEEEcCCcCEecCCCEEEEECc
Confidence            34444444445667777554 5679999999999999999999999999999974

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=95.05  E-value=0.036  Score=52.82  Aligned_cols=41  Identities=12%  Similarity=0.182  Sum_probs=36.2

Q ss_pred             EEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          236 CIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       236 ~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      +.|....-...|.++.+|+|.+++|++||.|..|++|+.+.
T Consensus        35 G~v~~~~~~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld   75 (423)
T TIGR01843        35 GKVVPSGNVKVVQHLEGGIVREILVREGDRVKAGQVLVELD   75 (423)
T ss_pred             eEEEECCCeeecccCCCcEEEEEEeCCCCEecCCCeEEEEc
Confidence            45556677777899999999999999999999999999986

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit

Probab=95.01  E-value=0.025  Score=56.65  Aligned_cols=39  Identities=28%  Similarity=0.243  Sum_probs=34.0

Q ss_pred             CcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEec
Q 023761          221 PFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIA  260 (277)
Q Consensus       221 ~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlV  260 (277)
                      +.|++||+|++||.|+.-+.. ....+.||++|+|++|..
T Consensus        43 ~~Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~~   81 (447)
T TIGR01936        43 MKVRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAINR   81 (447)
T ss_pred             eEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEec
Confidence            889999999999999986533 578899999999999954

This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>PRK15136 multidrug efflux system protein EmrA; Provisional

Probab=94.98  E-value=0.033  Score=54.15  Aligned_cols=34  Identities=21%  Similarity=0.367  Sum_probs=32.1

Q ss_pred             eeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761          244 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP  277 (277)
Q Consensus       244 ~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep  277 (277)
                      ...|.++++|+|.+++|++||.|..||+|++|.+
T Consensus        61 ~v~v~a~v~G~V~~v~V~~Gd~VkkGqvL~~LD~   94 (390)
T PRK15136         61 QVQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDP   94 (390)
T ss_pred             EEEEeccCCeEEEEEEcCCCCEECCCCEEEEECc
Confidence            7789999999999999999999999999999974

>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed

Probab=94.95  E-value=0.042  Score=52.89  Aligned_cols=53  Identities=19%  Similarity=0.228  Sum_probs=41.0

Q ss_pred             cCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761          224 KVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP  277 (277)
Q Consensus       224 kvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep  277 (277)
                      +.|+.-..-...+.|+.. ....|.++++|+|.+++++.||.|..||+|++|.+
T Consensus        44 ~~~~~~~~i~~~G~v~~~-~~~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~   96 (385)
T PRK09578         44 RPTSVPMTVELPGRLDAY-RQAEVRARVAGIVTARTYEEGQEVKQGAVLFRIDP   96 (385)
T ss_pred             EEecccceEEEEEEEEEe-eEEEEeccCcEEEEEEECCCCCEEcCCCEEEEECC
Confidence            334333333455677764 45689999999999999999999999999999964

>PRK11556 multidrug efflux system subunit MdtA; Provisional

Probab=94.95  E-value=0.042  Score=53.90  Aligned_cols=54  Identities=13%  Similarity=0.110  Sum_probs=41.9

Q ss_pred             ccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761          223 VKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP  277 (277)
Q Consensus       223 VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep  277 (277)
                      ++.|+.-.--+..+.|++. -...|.++++|+|.++++++|+.|..||+|++|.+
T Consensus        67 v~~~~~~~~i~~~Gtv~a~-~~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~  120 (415)
T PRK11556         67 ATEQAVPRYLTGLGTVTAA-NTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDP  120 (415)
T ss_pred             EEEeccceEEEEEEEEEee-eEEEEEccccEEEEEEECCCCCEecCCCEEEEECc
Confidence            3444433333456777764 55779999999999999999999999999999964

>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins

Probab=94.94  E-value=0.029  Score=52.45  Aligned_cols=37  Identities=38%  Similarity=0.364  Sum_probs=31.2

Q ss_pred             CcccCCCEEecCCeEEEEEcccee--eEEecCCCeEEEEEec
Q 023761          221 PFVKVGDRVQKGQVLCIIEAMKLM--NEIEADRSGTIVEIIA  260 (277)
Q Consensus       221 ~~VkvGd~V~kGqvL~~IEamK~~--~eI~Ap~sG~V~~IlV  260 (277)
                      ..|++||+|++||.|++   +|..  .-+.||++|+|.+|..
T Consensus        43 m~VkeGD~Vk~Gq~LF~---dK~~p~v~ftsPvsG~V~~I~R   81 (257)
T PF05896_consen   43 MLVKEGDRVKAGQPLFE---DKKNPGVKFTSPVSGTVKAINR   81 (257)
T ss_pred             EEeccCCEEeCCCeeEe---eCCCCCcEEecCCCeEEEEEec
Confidence            78999999999999997   4443  4467999999999875

The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process

>PRK11578 macrolide transporter subunit MacA; Provisional

Probab=94.92  E-value=0.049  Score=52.12  Aligned_cols=43  Identities=23%  Similarity=0.254  Sum_probs=35.5

Q ss_pred             eEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761          234 VLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP  277 (277)
Q Consensus       234 vL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep  277 (277)
                      .-+.|+.. -...|.++.+|.|.++++++||.|..||+|+.|.+
T Consensus        52 ~~G~v~~~-~~~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~   94 (370)
T PRK11578         52 ATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP   94 (370)
T ss_pred             EEEEEEee-eEEEEecccceEEEEEEcCCCCEEcCCCEEEEECc
Confidence            34455544 34578999999999999999999999999999864

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=94.86  E-value=0.032  Score=61.59  Aligned_cols=69  Identities=19%  Similarity=0.157  Sum_probs=57.5

Q ss_pred             CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ...+...+.|..+.       +.|+.|+.+..++.....+.. -...|.||..|+|.+++++.||.|..||+|+.|+
T Consensus      1038 ~r~v~fElNGq~re-------V~V~D~s~~~~~~~~~KAd~~-~~~~I~a~~~G~v~~~~v~~Gd~V~~Gd~L~~iE 1106 (1143)
T TIGR01235      1038 EREVFFELNGQPRR-------IKVPDRSHKAEAAVRRKADPG-NPAHVGAPMPGVIIEVKVSSGQAVNKGDPLVVLE 1106 (1143)
T ss_pred             cEEEEEEECCeEEE-------EEecCcccccccccccccccc-cCceeecCCCcEEEEEEeCCCCEeCCCCEEEEEE
Confidence            35778889999888       889999888888766554432 3356999999999999999999999999999986

This enzyme plays a role in gluconeogensis but not glycolysis.

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=94.84  E-value=0.057  Score=50.78  Aligned_cols=42  Identities=7%  Similarity=0.138  Sum_probs=35.1

Q ss_pred             eEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761          234 VLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP  277 (277)
Q Consensus       234 vL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep  277 (277)
                      +-+.|+.  -...|.++++|+|.++++++||.|..||+|++|.+
T Consensus        35 v~G~v~~--~~i~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld~   76 (331)
T PRK03598         35 LYGNVDI--RTVNLGFRVGGRLASLAVDEGDAVKAGQVLGELDA   76 (331)
T ss_pred             EEEEEee--EEEEeecccCcEEEEEEcCCCCEEcCCCEEEEECh
Confidence            3444553  35689999999999999999999999999999863

>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function

Probab=94.73  E-value=0.041  Score=47.71  Aligned_cols=40  Identities=38%  Similarity=0.525  Sum_probs=30.1

Q ss_pred             CcccCCCEEecCCeEEEEEcccee-eEEecCCCeEEEEEec
Q 023761          221 PFVKVGDRVQKGQVLCIIEAMKLM-NEIEADRSGTIVEIIA  260 (277)
Q Consensus       221 ~~VkvGd~V~kGqvL~~IEamK~~-~eI~Ap~sG~V~~IlV  260 (277)
                      +.+.+|+.|.+||.|+.|.+.|-. .-++||++|+|.-+.-
T Consensus        94 ~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~e  134 (150)
T PF09891_consen   94 PIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVIE  134 (150)
T ss_dssp             ESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEEE
T ss_pred             EEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEEe
Confidence            789999999999999999999965 4589999999987664

; PDB: 3D4R_D.

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=94.68  E-value=0.058  Score=52.64  Aligned_cols=36  Identities=14%  Similarity=0.165  Sum_probs=32.3

Q ss_pred             ceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761          242 KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP  277 (277)
Q Consensus       242 K~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep  277 (277)
                      .-...|.++.+|+|.+++|++||.|..|++|++|.+
T Consensus        56 ~~~~~v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~~   91 (421)
T TIGR03794        56 SGVDTIQSPGSGVVIDLDVEVGDQVKKGQVVARLFQ   91 (421)
T ss_pred             CceeEEECCCCeEEEEEECCCcCEECCCCEEEEECc
Confidence            345589999999999999999999999999999863

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>PRK15030 multidrug efflux system transporter AcrA; Provisional

Probab=94.62  E-value=0.059  Score=52.33  Aligned_cols=43  Identities=19%  Similarity=0.289  Sum_probs=36.3

Q ss_pred             eEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761          234 VLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP  277 (277)
Q Consensus       234 vL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep  277 (277)
                      ..+.|++ .-...|.+.++|+|.+++++.||.|..||+|++|.+
T Consensus        56 ~~G~v~a-~~~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~   98 (397)
T PRK15030         56 LPGRTSA-YRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDP   98 (397)
T ss_pred             EEEEEEE-EEEEEEEecCcEEEEEEEcCCCCEecCCCEEEEECC
Confidence            3345554 346779999999999999999999999999999974

>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit

Probab=94.48  E-value=0.038  Score=54.73  Aligned_cols=39  Identities=44%  Similarity=0.561  Sum_probs=34.2

Q ss_pred             CCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEe
Q 023761          220 PPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEII  259 (277)
Q Consensus       220 ~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~Il  259 (277)
                      .+.|++||+|++||.|+..+ ......|.||++|+|++|.
T Consensus        44 ~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~   82 (435)
T TIGR01945        44 EPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE   82 (435)
T ss_pred             ceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence            38899999999999999873 3467899999999999986

The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.

>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional

Probab=94.47  E-value=0.044  Score=54.83  Aligned_cols=38  Identities=37%  Similarity=0.324  Sum_probs=33.0

Q ss_pred             CcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEe
Q 023761          221 PFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEII  259 (277)
Q Consensus       221 ~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~Il  259 (277)
                      +.|++||+|++||.|+.-+.. ....+.||++|+|++|.
T Consensus        44 ~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~   81 (448)
T PRK05352         44 MKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAIN   81 (448)
T ss_pred             eEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEc
Confidence            789999999999999965433 56889999999999995

>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]

Probab=94.47  E-value=0.077  Score=46.28  Aligned_cols=20  Identities=20%  Similarity=0.444  Sum_probs=17.7

Q ss_pred             EEecCCCCccCCCCeEEEEc
Q 023761          257 EIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       257 ~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      +.++++||.|..||+|+++.
T Consensus        90 ~~~v~~Gd~Vk~Gd~Li~fD  109 (156)
T COG2190          90 ESLVKEGDKVKAGDPLLEFD  109 (156)
T ss_pred             EEEeeCCCEEccCCEEEEEC
Confidence            67899999999999999863

>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional

Probab=94.22  E-value=0.065  Score=50.58  Aligned_cols=33  Identities=30%  Similarity=0.411  Sum_probs=30.9

Q ss_pred             eEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761          245 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP  277 (277)
Q Consensus       245 ~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep  277 (277)
                      ..|.++++|.|.++++++||.|..||+|++|.+
T Consensus        48 v~i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~   80 (310)
T PRK10559         48 VAIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQ   80 (310)
T ss_pred             EEEccCCceEEEEEEeCCcCEEcCCCEEEEECc
Confidence            569999999999999999999999999999864

>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters)

Probab=94.06  E-value=0.068  Score=47.94  Aligned_cols=32  Identities=19%  Similarity=0.182  Sum_probs=29.7

Q ss_pred             eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          245 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       245 ~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ..|+||++|+|..+.+..|+.|..|++|+.|-
T Consensus        89 ~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~  120 (265)
T TIGR00999        89 VEVRSPFDGYITQKSVTLGDYVAPQAELFRVA  120 (265)
T ss_pred             EEEECCCCeEEEEEEcCCCCEeCCCCceEEEE
Confidence            36899999999999999999999999999874

>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]

Probab=94.06  E-value=0.035  Score=48.74  Aligned_cols=42  Identities=31%  Similarity=0.426  Sum_probs=38.7

Q ss_pred             cCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCc
Q 023761          224 KVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKP  265 (277)
Q Consensus       224 kvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~  265 (277)
                      ++|..|.+|+.++.+|.-|...+|.+|++|+|++|+-+-++.
T Consensus        89 e~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l~En  130 (172)
T KOG3373|consen   89 EVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKLEEN  130 (172)
T ss_pred             CCCCccccCcceeeeeehhhhhhhhCcCCceEEEeccccccC
Confidence            789999999999999999999999999999999998766553

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=93.95  E-value=0.047  Score=53.25  Aligned_cols=34  Identities=32%  Similarity=0.490  Sum_probs=31.4

Q ss_pred             CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEc
Q 023761          200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA  240 (277)
Q Consensus       200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEa  240 (277)
                      ...|.++..|++..       .+|++||.|++||+|+.|+.
T Consensus        58 ~~~v~a~~~G~V~~-------i~V~eG~~V~kGq~L~~l~~   91 (421)
T TIGR03794        58 VDTIQSPGSGVVID-------LDVEVGDQVKKGQVVARLFQ   91 (421)
T ss_pred             eeEEECCCCeEEEE-------EECCCcCEECCCCEEEEECc
Confidence            45899999999999       99999999999999999864

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]

Probab=93.92  E-value=0.075  Score=51.75  Aligned_cols=34  Identities=29%  Similarity=0.458  Sum_probs=31.3

Q ss_pred             eeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761          244 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP  277 (277)
Q Consensus       244 ~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep  277 (277)
                      ...|-+.++|.|++++|++++.|..|++||+|.|
T Consensus        53 vv~Iap~VsG~V~eV~V~dnq~Vk~Gd~L~~iD~   86 (352)
T COG1566          53 VVPIAPQVSGRVTEVNVKDNQLVKKGDVLFRIDP   86 (352)
T ss_pred             EEEEcCcCceEEEEEEecCCCEecCCCeEEEECc
Confidence            4567899999999999999999999999999976

>PRK05035 electron transport complex protein RnfC; Provisional

Probab=93.58  E-value=0.078  Score=55.82  Aligned_cols=39  Identities=44%  Similarity=0.479  Sum_probs=33.3

Q ss_pred             CCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEe
Q 023761          220 PPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEII  259 (277)
Q Consensus       220 ~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~Il  259 (277)
                      .+.|++||+|.+||.|+.-+ .-....|.||++|+|+.|.
T Consensus        50 ~~~V~~GD~V~~GQ~i~~~~-~~~s~~vhApvSG~V~~I~   88 (695)
T PRK05035         50 ELCVKVGDRVLKGQPLTQGD-GRMSLPVHAPTSGTVVAIE   88 (695)
T ss_pred             cceeCcCCEEcCCCEeeecC-CCceeEEeCCCCeEEeeec
Confidence            38999999999999999653 3356899999999999985

>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]

Probab=93.36  E-value=0.063  Score=54.59  Aligned_cols=38  Identities=45%  Similarity=0.515  Sum_probs=34.9

Q ss_pred             CCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEe
Q 023761          220 PPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEII  259 (277)
Q Consensus       220 ~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~Il  259 (277)
                      .++|++||+|.+||.|..=+.  .+..+.||.+|+|.+|.
T Consensus        46 ~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~   83 (529)
T COG4656          46 ILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE   83 (529)
T ss_pred             ceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeee
Confidence            378999999999999998775  89999999999999998

>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional

Probab=92.94  E-value=0.26  Score=51.61  Aligned_cols=66  Identities=21%  Similarity=0.378  Sum_probs=49.1

Q ss_pred             CCCccCCccEEEEecCCCCCCCcccCCCEEec----CCeEEEEEccceeeEEecCCCeEEE-------------------
Q 023761          200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQK----GQVLCIIEAMKLMNEIEADRSGTIV-------------------  256 (277)
Q Consensus       200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~k----GqvL~~IEamK~~~eI~Ap~sG~V~-------------------  256 (277)
                      ...|.||+.|++..        .-++-|.|=.    |+-++++=..   ..|.||++|+|.                   
T Consensus       498 ~~~v~aP~~G~vi~--------l~~v~D~vFs~~~~G~GvaI~P~~---~~v~AP~~G~v~~v~~T~HA~gi~t~~G~ei  566 (648)
T PRK10255        498 IAELVSPITGDVVA--------LDQVPDEAFASKAVGDGVAVKPTD---KIVVSPAAGTIVKIFNTNHAFCLETEKGAEI  566 (648)
T ss_pred             ceEEEecCCcEEEE--------cccCcchhhhcccccCcEEEeCCC---CeEEecCCeEEEEEcCCCcEEEEEcCCCCEE
Confidence            34699999999987        4455554443    6666665443   578888888887                   


Q ss_pred             ----------------EEecCCCCccCCCCeEEEEc
Q 023761          257 ----------------EIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       257 ----------------~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                                      +.+|++||.|..||+|+++.
T Consensus       567 LIHiGidTV~l~G~gF~~~Vk~Gd~V~~G~~l~~~D  602 (648)
T PRK10255        567 VVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMD  602 (648)
T ss_pred             EEEeccchhccCCCCceEEecCCCEEcCCCEEEEEc
Confidence                            45688999999999999864

>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional

Probab=92.87  E-value=0.22  Score=51.94  Aligned_cols=64  Identities=17%  Similarity=0.309  Sum_probs=50.8

Q ss_pred             CccCCccEEEEecCCCCCCCcccCCCEEec----CCeEEEEEccceeeEEecCCCeEEE---------------------
Q 023761          202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQK----GQVLCIIEAMKLMNEIEADRSGTIV---------------------  256 (277)
Q Consensus       202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~k----GqvL~~IEamK~~~eI~Ap~sG~V~---------------------  256 (277)
                      .|.||+.|++..        .-++.|.|=.    ||-++++=.   ...|.||++|+|.                     
T Consensus       480 ~i~aP~~G~v~~--------L~~v~D~vFs~~~mG~G~AI~P~---~~~v~AP~~G~v~~vf~T~HAigi~t~~G~eiLi  548 (627)
T PRK09824        480 GICSPMTGEVVP--------LEQVADTTFASGLLGKGIAILPS---VGEVRSPVAGRVASLFATLHAIGLESDDGVEVLI  548 (627)
T ss_pred             hcccccceEEee--------HHHCCCccccccccCCceEecCC---CCeEEccCCeEEEEEcCCCcEEEEEeCCCcEEEE
Confidence            599999999987        6677777766    666666433   3588899999887                     


Q ss_pred             --------------EEecCCCCccCCCCeEEEEc
Q 023761          257 --------------EIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       257 --------------~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                                    +.++++||.|..||+|+++.
T Consensus       549 HiGiDTV~L~G~gF~~~v~~Gd~V~~G~~l~~~D  582 (627)
T PRK09824        549 HVGIDTVKLDGKFFTAHVNVGDKVNTGDLLIEFD  582 (627)
T ss_pred             EechhhhhcCCCCceEEecCCCEEcCCCEEEEEc
Confidence                          56788999999999999874

>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]

Probab=92.72  E-value=0.15  Score=50.00  Aligned_cols=39  Identities=36%  Similarity=0.315  Sum_probs=31.7

Q ss_pred             CcccCCCEEecCCeEEEEEccce--eeEEecCCCeEEEEEecCC
Q 023761          221 PFVKVGDRVQKGQVLCIIEAMKL--MNEIEADRSGTIVEIIAED  262 (277)
Q Consensus       221 ~~VkvGd~V~kGqvL~~IEamK~--~~eI~Ap~sG~V~~IlVe~  262 (277)
                      ..|++||.|++||+|++   +|.  -.-+.||++|+|++|+.-+
T Consensus        43 mkV~~gD~VkkGq~LfE---dKknpgv~~Tap~sG~V~aI~RG~   83 (447)
T COG1726          43 MKVREGDAVKKGQVLFE---DKKNPGVVFTAPVSGKVTAIHRGE   83 (447)
T ss_pred             ceeccCCeeeccceeee---cccCCCeEEeccCCceEEEeeccc
Confidence            67999999999999986   343  3457899999999988433

>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]

Probab=92.67  E-value=0.25  Score=44.68  Aligned_cols=45  Identities=22%  Similarity=0.259  Sum_probs=35.8

Q ss_pred             CCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761          232 GQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP  277 (277)
Q Consensus       232 GqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep  277 (277)
                      -...+.++. .....|.+...|.|.++++++||.|..|++|+.+.+
T Consensus        55 ~~~~G~~~~-~~~~~v~~~~~G~v~~i~v~~G~~Vk~Gq~L~~ld~   99 (372)
T COG0845          55 VRAPGRVEA-TRSVEVLARVAGIVAEILVKEGDRVKKGQLLARLDP   99 (372)
T ss_pred             eeeeeEEEe-eeeeeEecccccEEEEEEccCCCeecCCCEEEEECC
Confidence            344455555 334478888999999999999999999999999863

>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional

Probab=92.67  E-value=0.2  Score=49.15  Aligned_cols=43  Identities=16%  Similarity=0.156  Sum_probs=35.7

Q ss_pred             eEEEEEccc-eeeEEecCCCeEEEEEe-cCCCCccCCCCeEEEEc
Q 023761          234 VLCIIEAMK-LMNEIEADRSGTIVEII-AEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       234 vL~~IEamK-~~~eI~Ap~sG~V~~Il-Ve~Gd~V~~GqpL~~Ie  276 (277)
                      ..+.|+... ....|.+.++|.|.+++ +..||.|..||+|++|.
T Consensus       112 ~~G~v~~~~~~~~~v~arv~G~V~~l~~~~~Gd~VkkGq~La~l~  156 (409)
T PRK09783        112 FPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLT  156 (409)
T ss_pred             EeEEEEECCCceEEEeCCcCEEEEEEEecCCCCEECCCCEEEEEe
Confidence            345666433 45679999999999998 99999999999999986

>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component

Probab=92.58  E-value=0.28  Score=50.90  Aligned_cols=64  Identities=27%  Similarity=0.414  Sum_probs=48.7

Q ss_pred             CccCCccEEEEecCCCCCCCcccCCCEEec----CCeEEEEEccceeeEEecCCCeEEE---------------------
Q 023761          202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQK----GQVLCIIEAMKLMNEIEADRSGTIV---------------------  256 (277)
Q Consensus       202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~k----GqvL~~IEamK~~~eI~Ap~sG~V~---------------------  256 (277)
                      .|.||+.|++..        .-++-|.|=.    ||-+++.-.   ...|.||++|+|.                     
T Consensus       464 ~i~aP~~G~~~~--------l~~v~D~vFs~~~~G~G~ai~P~---~~~v~aP~~G~v~~~~~t~Ha~gi~~~~G~eili  532 (610)
T TIGR01995       464 SLYAPVAGEMLP--------LNEVPDEVFSSGAMGKGIAILPT---EGEVVAPVDGTVTAVFPTKHAIGIRSDNGIEILI  532 (610)
T ss_pred             eeccccceEEee--------HhhCCCccccccCcCCceEeeCC---CCEEECCCCeEEEEEcCCCCEEEEEECCCcEEEE
Confidence            589999999987        5566666655    666665432   3578888888776                     


Q ss_pred             --------------EEecCCCCccCCCCeEEEEc
Q 023761          257 --------------EIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       257 --------------~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                                    +.++++||.|..||+|+++.
T Consensus       533 HiGidTv~l~g~gF~~~v~~g~~V~~G~~l~~~d  566 (610)
T TIGR01995       533 HVGIDTVELNGEGFEILVKVGDHVKAGQLLLTFD  566 (610)
T ss_pred             EeccchhccCCCCeEEEecCcCEEcCCCEEEEec
Confidence                          57789999999999999874

This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.

>PRK05305 phosphatidylserine decarboxylase; Provisional

Probab=92.50  E-value=0.21  Score=44.77  Aligned_cols=48  Identities=19%  Similarity=0.265  Sum_probs=39.0

Q ss_pred             cccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEE
Q 023761          222 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLF  273 (277)
Q Consensus       222 ~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~  273 (277)
                      ++++|+.+++||.++.++-. -...+.-|.+   .++.++.||.|..|+.++
T Consensus       155 ~~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~kV~~Getvi  202 (206)
T PRK05305        155 YVKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQKVVAGETVL  202 (206)
T ss_pred             eCCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCCEEEcccEEE
Confidence            67899999999999999977 3455555655   378999999999998654

>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein

Probab=92.23  E-value=0.25  Score=43.79  Aligned_cols=48  Identities=17%  Similarity=0.276  Sum_probs=39.2

Q ss_pred             cccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEE
Q 023761          222 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLF  273 (277)
Q Consensus       222 ~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~  273 (277)
                      ++++|+.|++||.++.++-. -...+.-|.+   .++.++.|+.|..|+.|+
T Consensus       135 ~~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~~V~~G~tli  182 (189)
T TIGR00164       135 YVKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGEKVTAGETVL  182 (189)
T ss_pred             ecCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCCEEEeceEEE
Confidence            67899999999999999976 4444555655   368899999999999775

It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.

>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein

Probab=92.06  E-value=0.13  Score=44.47  Aligned_cols=33  Identities=30%  Similarity=0.486  Sum_probs=30.7

Q ss_pred             CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEE
Q 023761          200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIE  239 (277)
Q Consensus       200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IE  239 (277)
                      ...|.|+..|++.+       ++++.||.|..||.|+.|+
T Consensus       124 ~~eI~A~~~G~v~~-------i~v~~g~~V~~Gq~L~~i~  156 (156)
T TIGR00531       124 MNEIEAEVAGKVVE-------ILVENGQPVEYGQPLIVIE  156 (156)
T ss_pred             ceEEecCCCcEEEE-------EEeCCCCEECCCCEEEEEC
Confidence            45799999999999       9999999999999999985

The gene name is accB or fabE.

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=91.80  E-value=0.19  Score=52.10  Aligned_cols=32  Identities=25%  Similarity=0.414  Sum_probs=30.2

Q ss_pred             eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          245 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       245 ~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      .+|.||..|+|.+++|+.||.|+.||+|+.||
T Consensus       526 ~~v~apm~G~V~~~~V~~Gd~V~~Gq~L~~iE  557 (596)
T PRK14042        526 GDITVAIPGSIIAIHVSAGDEVKAGQAVLVIE  557 (596)
T ss_pred             CeEecCcceEEEEEEeCCCCEeCCCCEEEEEE
Confidence            36999999999999999999999999999986

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=91.73  E-value=0.12  Score=51.14  Aligned_cols=33  Identities=15%  Similarity=0.346  Sum_probs=30.5

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEc
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA  240 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEa  240 (277)
                      ..|.++..|.+..       ++|++||.|++||+|+.|+.
T Consensus        60 ~~vq~~~~G~v~~-------i~V~eG~~V~~G~~L~~ld~   92 (457)
T TIGR01000        60 SKIQSTSNNAIKE-------NYLKENKFVKKGDLLVVYDN   92 (457)
T ss_pred             EEEEcCCCcEEEE-------EEcCCCCEecCCCEEEEECc
Confidence            4799999999999       99999999999999999864

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=91.71  E-value=0.16  Score=43.81  Aligned_cols=33  Identities=27%  Similarity=0.422  Sum_probs=30.7

Q ss_pred             CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEE
Q 023761          200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIE  239 (277)
Q Consensus       200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IE  239 (277)
                      ...|.||..|++..       ++++.|+.|..||.|+.|+
T Consensus       123 ~~eI~a~~~G~i~~-------i~v~~g~~V~~Gq~L~~i~  155 (155)
T PRK06302        123 MNEIEADKSGVVTE-------ILVENGQPVEFGQPLFVIE  155 (155)
T ss_pred             ceEEecCCCeEEEE-------EEcCCCCEeCCCCEEEEeC
Confidence            45899999999999       9999999999999999885

>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

Probab=91.60  E-value=0.19  Score=46.52  Aligned_cols=35  Identities=23%  Similarity=0.507  Sum_probs=32.1

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccc
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK  242 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK  242 (277)
                      ..|.||..|++..       +.+++||.|..||+|+.|+...
T Consensus        46 ~~~~a~~~g~~~~-------~~~~~g~~v~~g~~l~~i~~~~   80 (371)
T PRK14875         46 NEVEAPAAGTLRR-------QVAQEGETLPVGALLAVVADAE   80 (371)
T ss_pred             EEEecCCCeEEEE-------EEcCCCCEeCCCCEEEEEecCC
Confidence            4799999999999       9999999999999999998653

>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase

Probab=90.79  E-value=0.29  Score=46.17  Aligned_cols=30  Identities=17%  Similarity=0.233  Sum_probs=28.0

Q ss_pred             EecCCCeEEEE-------EecCCCCccCCCCeEEEEc
Q 023761          247 IEADRSGTIVE-------IIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       247 I~Ap~sG~V~~-------IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      |.||..|+|.+       ++++.||.|+.||.|+.||
T Consensus       200 V~APmaGtf~r~p~pge~w~VkvGDsVkkGQvLavIE  236 (274)
T PLN02983        200 LKSPMAGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIE  236 (274)
T ss_pred             EeCCcCeEEEeccCCCCcceeCCCCEecCCCEEEEEE
Confidence            78999999999       5999999999999999986

>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

Probab=90.54  E-value=0.26  Score=36.14  Aligned_cols=31  Identities=29%  Similarity=0.460  Sum_probs=28.5

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEE
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCII  238 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~I  238 (277)
                      ..|+||..|++.+       ++++.|+.|..|+.|+.|
T Consensus        43 ~~i~ap~~G~v~~-------~~~~~g~~v~~g~~l~~i   73 (73)
T cd06663          43 SDVEAPKSGTVKK-------VLVKEGTKVEGDTPLVKI   73 (73)
T ss_pred             EEEEcCCCEEEEE-------EEeCCCCEECCCCEEEEC
Confidence            4699999999999       999999999999999875

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=90.41  E-value=0.31  Score=50.48  Aligned_cols=33  Identities=21%  Similarity=0.402  Sum_probs=30.8

Q ss_pred             eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          244 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       244 ~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ...|.||..|+|.++++++||.|+.||+|+.|+
T Consensus       524 ~~~V~Ap~~G~I~~~~V~~Gd~V~~Gd~l~~iE  556 (593)
T PRK14040        524 GEPVTAPLAGNIFKVIVTEGQTVAEGDVLLILE  556 (593)
T ss_pred             CceEECCccEEEEEEEeCCCCEeCCCCEEEEEe
Confidence            447999999999999999999999999999986

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=90.22  E-value=0.34  Score=50.13  Aligned_cols=33  Identities=21%  Similarity=0.380  Sum_probs=30.9

Q ss_pred             eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          244 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       244 ~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ...|.||..|+|.++++++||.|..||+|+.|+
T Consensus       517 ~~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~iE  549 (582)
T TIGR01108       517 GTPVTAPIAGSIVKVKVSEGQTVAEGEVLLILE  549 (582)
T ss_pred             CCeEeCCccEEEEEEEeCCCCEECCCCEEEEEE
Confidence            357999999999999999999999999999986

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component

Probab=90.11  E-value=0.7  Score=48.02  Aligned_cols=75  Identities=23%  Similarity=0.360  Sum_probs=47.7

Q ss_pred             CCccCCccEEEEecCCCC----------------------------CCCcccCCCEEecCCeEEEEEcccee-------e
Q 023761          201 PPLKCPMAGTFYRSPAPG----------------------------EPPFVKVGDRVQKGQVLCIIEAMKLM-------N  245 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~----------------------------~~~~VkvGd~V~kGqvL~~IEamK~~-------~  245 (277)
                      ..|.||..|++..-.+..                            =+.+|++||+|++||.|+.++-..+.       .
T Consensus       500 ~~v~aP~~G~v~~~~~t~Ha~gi~~~~G~eiliHiGidTv~l~g~gF~~~v~~g~~V~~G~~l~~~d~~~i~~~~~~~~~  579 (610)
T TIGR01995       500 GEVVAPVDGTVTAVFPTKHAIGIRSDNGIEILIHVGIDTVELNGEGFEILVKVGDHVKAGQLLLTFDLDKIKEAGYDPTT  579 (610)
T ss_pred             CEEECCCCeEEEEEcCCCCEEEEEECCCcEEEEEeccchhccCCCCeEEEecCcCEEcCCCEEEEecHHHHHhcCCCCee
Confidence            478888888877532211                            13779999999999999998764332       2


Q ss_pred             EEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 023761          246 EIEADRSGTIVEIIAEDRKPVSVDTPLFVI  275 (277)
Q Consensus       246 eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~I  275 (277)
                      .|--.-......+....+..|..|+.++++
T Consensus       580 ~vvv~n~~~~~~~~~~~~~~~~~~~~~~~~  609 (610)
T TIGR01995       580 PVVVTNTKDFLDVIPTDKETVTAGDVLLRL  609 (610)
T ss_pred             EEEEEccccccceeeccCCcccCCCeeEEe
Confidence            222111122223444556678999998875

This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.

>PLN02226 2-oxoglutarate dehydrogenase E2 component

Probab=89.81  E-value=0.26  Score=49.72  Aligned_cols=35  Identities=29%  Similarity=0.423  Sum_probs=32.2

Q ss_pred             CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcc
Q 023761          200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM  241 (277)
Q Consensus       200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEam  241 (277)
                      ...|.||..|++..       +++++||.|..||+||.|+..
T Consensus       134 ~~eI~Ap~~G~v~~-------ilv~eGd~V~vG~~L~~I~~~  168 (463)
T PLN02226        134 TIDIASPASGVIQE-------FLVKEGDTVEPGTKVAIISKS  168 (463)
T ss_pred             eeEEecCCCeEEEE-------EEeCCCCEecCCCEEEEeccC
Confidence            35799999999999       999999999999999999754

>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]

Probab=89.70  E-value=0.45  Score=36.40  Aligned_cols=28  Identities=46%  Similarity=0.558  Sum_probs=20.3

Q ss_pred             CCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcc
Q 023761          205 CPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM  241 (277)
Q Consensus       205 APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEam  241 (277)
                      -+.+|....         ++.||.|++||+||.|=+.
T Consensus        29 D~~vGi~l~---------~k~Gd~V~~Gd~l~~i~~~   56 (75)
T PF07831_consen   29 DPAVGIELH---------KKVGDRVEKGDPLATIYAN   56 (75)
T ss_dssp             -TT-EEEES---------S-TTSEEBTTSEEEEEEES
T ss_pred             CcCcCeEec---------CcCcCEECCCCeEEEEEcC
Confidence            356777654         9999999999999998543

It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....

>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional

Probab=89.33  E-value=0.91  Score=47.47  Aligned_cols=74  Identities=22%  Similarity=0.351  Sum_probs=46.7

Q ss_pred             CCccCCccEEEEecCCCC----------------------------CCCcccCCCEEecCCeEEEEEccce-------ee
Q 023761          201 PPLKCPMAGTFYRSPAPG----------------------------EPPFVKVGDRVQKGQVLCIIEAMKL-------MN  245 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~----------------------------~~~~VkvGd~V~kGqvL~~IEamK~-------~~  245 (277)
                      ..|.||..|++..-.+..                            =..+|++||+|++||.|+.++-..+       ..
T Consensus       516 ~~v~AP~~G~v~~vf~T~HAigi~t~~G~eiLiHiGiDTV~L~G~gF~~~v~~Gd~V~~G~~l~~~D~~~i~~~g~~~~~  595 (627)
T PRK09824        516 GEVRSPVAGRVASLFATLHAIGLESDDGVEVLIHVGIDTVKLDGKFFTAHVNVGDKVNTGDLLIEFDIPAIREAGYDLTT  595 (627)
T ss_pred             CeEEccCCeEEEEEcCCCcEEEEEeCCCcEEEEEechhhhhcCCCCceEEecCCCEEcCCCEEEEEcHHHHHhcCCCCeE
Confidence            478999999887532111                            1388999999999999999875432       11


Q ss_pred             EEe-cCCCeEEEEEecCCCCccCCCCeEEEE
Q 023761          246 EIE-ADRSGTIVEIIAEDRKPVSVDTPLFVI  275 (277)
Q Consensus       246 eI~-Ap~sG~V~~IlVe~Gd~V~~GqpL~~I  275 (277)
                      .|- ... .....+....+..|..|++|+.+
T Consensus       596 ~vvvtn~-~~~~~~~~~~~~~v~~~~~~~~~  625 (627)
T PRK09824        596 PVLISNS-DDYTDVLPHATAQVSAGEPLLSI  625 (627)
T ss_pred             EEEEEcc-ccccceeeccCCcccCCCeEEEe
Confidence            211 111 11222333455668999998876

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=89.31  E-value=0.45  Score=49.30  Aligned_cols=33  Identities=18%  Similarity=0.387  Sum_probs=30.9

Q ss_pred             eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          244 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       244 ~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ...|.||..|+|.++++++||.|+.||+|+.|+
T Consensus       522 ~~~V~Ap~~G~v~~~~V~~Gd~V~~Gq~L~~ie  554 (592)
T PRK09282        522 PGAVTSPMPGTVVKVKVKEGDKVKAGDTVLVLE  554 (592)
T ss_pred             CceEeCCCcEEEEEEEeCCCCEECCCCEEEEEe
Confidence            457999999999999999999999999999986

>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria

Probab=88.89  E-value=0.52  Score=41.86  Aligned_cols=64  Identities=19%  Similarity=0.167  Sum_probs=47.5

Q ss_pred             CCccCCccEEEEecCCCCCCCcc--cCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEE
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFV--KVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFV  274 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~V--kvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~  274 (277)
                      ..|.+-++|.+..        ++  ++|+.|++||.++.++- --...+--|.+ .+.++.++.|+.|..|+.|+.
T Consensus       137 v~Vga~~v~~I~~--------~~~~~~g~~v~kG~e~G~f~f-GStvvl~f~~~-~~~~~~v~~g~~V~~Ge~i~~  202 (202)
T PF02666_consen  137 VQVGALLVGSIVL--------TVDPKEGDEVKKGEELGYFRF-GSTVVLLFPKD-KIFEWSVKPGQKVRAGETIGY  202 (202)
T ss_pred             EEeccceeceeEE--------EecccCCCEEecCcEeCEEec-CCeEEEEEeCC-CccccccCCCCEEEeeeEEeC
Confidence            3667777888876        45  68999999999999986 33333333332 233899999999999999863

The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process

>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

Probab=88.33  E-value=0.49  Score=48.95  Aligned_cols=31  Identities=32%  Similarity=0.469  Sum_probs=29.2

Q ss_pred             EEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          246 EIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       246 eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      .+.||..|+|+.+.|++|+.|..||+|+.+|
T Consensus       577 ~l~aPMpG~v~~v~V~~G~~V~~G~~lvvlE  607 (645)
T COG4770         577 ELLAPMPGTVVSVAVKEGQEVSAGDLLVVLE  607 (645)
T ss_pred             ceecCCCceEEEEEecCCCEecCCCeEEEeE
Confidence            3789999999999999999999999999886

>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]

Probab=88.23  E-value=0.38  Score=43.44  Aligned_cols=32  Identities=38%  Similarity=0.566  Sum_probs=29.9

Q ss_pred             CccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEc
Q 023761          202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA  240 (277)
Q Consensus       202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEa  240 (277)
                      .|.++..|.+..       ++|++||.|++||+|+.++.
T Consensus        68 ~v~~~~~G~v~~-------i~v~~G~~Vk~Gq~L~~ld~   99 (372)
T COG0845          68 EVLARVAGIVAE-------ILVKEGDRVKKGQLLARLDP   99 (372)
T ss_pred             eEecccccEEEE-------EEccCCCeecCCCEEEEECC
Confidence            688889999999       99999999999999999987

>COG4072 Uncharacterized protein conserved in archaea [Function unknown]

Probab=88.12  E-value=0.79  Score=39.54  Aligned_cols=51  Identities=29%  Similarity=0.427  Sum_probs=43.6

Q ss_pred             CccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeE-EecCCCeEEEEEe
Q 023761          202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNE-IEADRSGTIVEII  259 (277)
Q Consensus       202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~e-I~Ap~sG~V~~Il  259 (277)
                      .+.=|.-|.+..       +.+.+|++|.+|+.++-+.+-|...- +.+|++|+|+-+.
T Consensus        93 ll~iPvEGYvVt-------pIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi~  144 (161)
T COG4072          93 LLLIPVEGYVVT-------PIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYID  144 (161)
T ss_pred             EEEEecCcEEEE-------EeecccchhcCCCceeEEEecccceEEecCCCCcEEEEEe
Confidence            455688899888       89999999999999999999987654 7899999998554

>PTZ00144 dihydrolipoamide succinyltransferase; Provisional

Probab=87.98  E-value=0.4  Score=47.76  Aligned_cols=36  Identities=25%  Similarity=0.416  Sum_probs=32.5

Q ss_pred             CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccc
Q 023761          200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK  242 (277)
Q Consensus       200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK  242 (277)
                      ...|.||..|++.+       +++++||.|..||+|+.|+...
T Consensus        87 ~~ei~Ap~~G~v~~-------i~v~~G~~V~~G~~L~~I~~~~  122 (418)
T PTZ00144         87 SVDIRAPASGVITK-------IFAEEGDTVEVGAPLSEIDTGG  122 (418)
T ss_pred             EEEEecCCCeEEEE-------EEeCCCCEecCCCEEEEEcCCC
Confidence            35799999999999       9999999999999999997643

>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins

Probab=87.49  E-value=5  Score=39.31  Aligned_cols=55  Identities=31%  Similarity=0.399  Sum_probs=37.8

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEE--EEEccceeeEEecCCCeEEEE
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLC--IIEAMKLMNEIEADRSGTIVE  257 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~--~IEamK~~~eI~Ap~sG~V~~  257 (277)
                      ..|.|-..|.+.+--.-...+.|++||.|++||+|.  .|+......++  ..+|.|..
T Consensus       190 ~~lVA~kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLISG~i~~~~~~~~v--~A~G~V~a  246 (385)
T PF06898_consen  190 CNLVAKKDGVITSIIVRSGTPLVKVGDTVKKGDVLISGVIEIEGDEQEV--HADGDVKA  246 (385)
T ss_pred             cceEECCCCEEEEEEecCCeEEecCCCEECCCCEEEeeeEcCCCCceEE--CCcEEEEE
Confidence            357777888887755555668899999999999995  66654443333  34555543

YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].

>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]

Probab=87.01  E-value=0.86  Score=39.82  Aligned_cols=55  Identities=16%  Similarity=0.189  Sum_probs=33.6

Q ss_pred             CcccCCCEEecCCeEEEEEccceeeEEecCCCe-------EE-EEEecCCCCccCCCCeEEEE
Q 023761          221 PFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSG-------TI-VEIIAEDRKPVSVDTPLFVI  275 (277)
Q Consensus       221 ~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG-------~V-~~IlVe~Gd~V~~GqpL~~I  275 (277)
                      .+|++||+|++||.|+..+-..+...-++...=       .+ .-+....+..|..|+.++.+
T Consensus        91 ~~v~~Gd~Vk~Gd~Li~fDl~~Ik~~~~s~itpvVvtN~~~~~~~~~~~~~~~v~~g~~~~~~  153 (156)
T COG2190          91 SLVKEGDKVKAGDPLLEFDLDLIKAKGYSTITPVVVTNMDDFKKIVKLSGGGEVKAGETLLLV  153 (156)
T ss_pred             EEeeCCCEEccCCEEEEECHHHHhhcCCCceeeEEEEcchheeeeEeeccCcceecCCeeEEE
Confidence            789999999999999998765432221111111       11 12233344467788888765

>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]

Probab=87.00  E-value=0.51  Score=50.73  Aligned_cols=69  Identities=25%  Similarity=0.247  Sum_probs=50.0

Q ss_pred             CCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccc-eeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          199 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK-LMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       199 ~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK-~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      +...|...+.|...+         |++-|+..+-.+...-.++. --..|-||..|+|+++.|+.|+.|..||+|+.|+
T Consensus      1042 G~r~v~felNGq~R~---------i~v~Drs~~~~~~~r~KAd~~Np~higApmpG~Vv~v~V~~G~~Vk~Gd~l~~ie 1111 (1149)
T COG1038        1042 GMRTVYFELNGQPRE---------IKVKDRSVGSSVVARRKADPGNPGHIGAPMPGVVVEVKVKKGDKVKKGDVLAVIE 1111 (1149)
T ss_pred             CcEEEEEEeCCceee---------eeecccccccccccccccCCCCccccCCCCCCceEEEEEccCCeecCCCeeeehh
Confidence            445666667777666         55555555555544444443 2345889999999999999999999999999886

>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

Probab=86.97  E-value=0.71  Score=31.71  Aligned_cols=31  Identities=35%  Similarity=0.618  Sum_probs=27.9

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEE
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCII  238 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~I  238 (277)
                      ..+.+|..|++..       ++++.|+.|..|+.|+.|
T Consensus        44 ~~i~a~~~g~v~~-------~~~~~g~~v~~g~~l~~~   74 (74)
T cd06849          44 VEVEAPAAGVLAK-------ILVEEGDTVPVGQVIAVI   74 (74)
T ss_pred             EEEECCCCEEEEE-------EeeCCcCEeCCCCEEEEC
Confidence            3689999999988       899999999999999875

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.

>TIGR02712 urea_carbox urea carboxylase

Probab=86.66  E-value=0.73  Score=51.46  Aligned_cols=33  Identities=21%  Similarity=0.493  Sum_probs=30.4

Q ss_pred             eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          244 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       244 ~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ...|.||+.|+|.++++++||.|+.||+|+.|+
T Consensus      1132 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gd~l~~iE 1164 (1201)
T TIGR02712      1132 AEQVESEYAGNFWKVLVEVGDRVEAGQPLVILE 1164 (1201)
T ss_pred             CcEEeCCceEEEEEEEeCCCCEECCCCEEEEEE
Confidence            345889999999999999999999999999986

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.

>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional

Probab=86.52  E-value=1.3  Score=46.49  Aligned_cols=43  Identities=21%  Similarity=0.220  Sum_probs=32.8

Q ss_pred             CCCccCCccEEEEecCCCCC----------------------------CCcccCCCEEecCCeEEEEEccc
Q 023761          200 LPPLKCPMAGTFYRSPAPGE----------------------------PPFVKVGDRVQKGQVLCIIEAMK  242 (277)
Q Consensus       200 ~~~I~APm~G~~~~sp~p~~----------------------------~~~VkvGd~V~kGqvL~~IEamK  242 (277)
                      ...|.||..|++..-.+...                            ..+|++||+|++||.|+.++-..
T Consensus       535 ~~~v~AP~~G~v~~v~~T~HA~gi~t~~G~eiLIHiGidTV~l~G~gF~~~Vk~Gd~V~~G~~l~~~D~~~  605 (648)
T PRK10255        535 DKIVVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMDLDY  605 (648)
T ss_pred             CCeEEecCCeEEEEEcCCCcEEEEEcCCCCEEEEEeccchhccCCCCceEEecCCCEEcCCCEEEEEcHHH
Confidence            35899999999876332111                            27799999999999999987543

>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria

Probab=86.22  E-value=0.68  Score=39.20  Aligned_cols=43  Identities=28%  Similarity=0.355  Sum_probs=29.3

Q ss_pred             CCccCCccEEEEecCCCCC----------------------------CCcccCCCEEecCCeEEEEEccce
Q 023761          201 PPLKCPMAGTFYRSPAPGE----------------------------PPFVKVGDRVQKGQVLCIIEAMKL  243 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~----------------------------~~~VkvGd~V~kGqvL~~IEamK~  243 (277)
                      ..|.||..|++..-..-+.                            .++|++||+|++||.|+.++-.++
T Consensus        40 ~~v~AP~~G~v~~i~~T~HAi~i~s~~G~eiLiHiGidTv~L~G~gF~~~v~~G~~V~~G~~L~~~D~~~i  110 (132)
T PF00358_consen   40 GKVYAPVDGTVTMIFPTKHAIGIRSDNGVEILIHIGIDTVKLNGEGFETLVKEGDKVKAGQPLIEFDLEKI  110 (132)
T ss_dssp             SEEEESSSEEEEEE-TTSSEEEEEETTSEEEEEE-SBSGGGGTTTTEEESS-TTSEE-TTEEEEEE-HHHH
T ss_pred             CeEEEEeeEEEEEEcCCCCEEEEEeCCCCEEEEEEccchhhcCCcceEEEEeCCCEEECCCEEEEEcHHHH
Confidence            3788999998876332111                            388999999999999999876543

The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....

>PRK09439 PTS system glucose-specific transporter subunit; Provisional

Probab=85.60  E-value=1.6  Score=38.45  Aligned_cols=21  Identities=19%  Similarity=0.314  Sum_probs=18.9

Q ss_pred             CcccCCCEEecCCeEEEEEcc
Q 023761          221 PFVKVGDRVQKGQVLCIIEAM  241 (277)
Q Consensus       221 ~~VkvGd~V~kGqvL~~IEam  241 (277)
                      ++|++||+|++||.|+.++-.
T Consensus       106 ~~Vk~Gd~Vk~G~~L~~~D~~  126 (169)
T PRK09439        106 RIAEEGQRVKVGDPIIEFDLP  126 (169)
T ss_pred             EEecCCCEEeCCCEEEEEcHH
Confidence            789999999999999998754

>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit

Probab=85.41  E-value=0.81  Score=41.82  Aligned_cols=35  Identities=34%  Similarity=0.569  Sum_probs=31.4

Q ss_pred             CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcc
Q 023761          200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM  241 (277)
Q Consensus       200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEam  241 (277)
                      ...|+||+.|++..       .+++.|+.|++|+.|+.|...
T Consensus       134 ~~~i~AP~~G~V~~-------~~~~~G~~v~~g~~l~~i~~~  168 (322)
T TIGR01730       134 YTEIRAPFDGTIGR-------RLVEVGAYVTAGQTLATIVDL  168 (322)
T ss_pred             cCEEECCCCcEEEE-------EEcCCCceeCCCCcEEEEEcC
Confidence            45799999999999       899999999999999988654

This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.

>PRK05704 dihydrolipoamide succinyltransferase; Validated

Probab=85.05  E-value=0.82  Score=45.24  Aligned_cols=36  Identities=31%  Similarity=0.407  Sum_probs=32.6

Q ss_pred             CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccc
Q 023761          200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK  242 (277)
Q Consensus       200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK  242 (277)
                      ...|.||..|++.+       +++++||.|..|++|+.|+...
T Consensus        45 ~~ei~a~~~G~v~~-------i~v~~G~~V~~G~~l~~i~~~~   80 (407)
T PRK05704         45 VLEVPAPAAGVLSE-------ILAEEGDTVTVGQVLGRIDEGA   80 (407)
T ss_pred             eeEEecCCCEEEEE-------EEeCCCCEeCCCCEEEEEecCC
Confidence            35799999999999       9999999999999999998654

>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional

Probab=85.00  E-value=1.1  Score=53.48  Aligned_cols=22  Identities=23%  Similarity=0.401  Sum_probs=19.0

Q ss_pred             CCCCcccCCCEEecCCeEEEEE
Q 023761          218 GEPPFVKVGDRVQKGQVLCIIE  239 (277)
Q Consensus       218 ~~~~~VkvGd~V~kGqvL~~IE  239 (277)
                      ++..+|+.|+.|++||+||..+
T Consensus      2421 ga~l~v~~g~~V~~g~~la~wd 2442 (2836)
T PRK14844       2421 GAKLYVDEGGSVKIGDKVAEWD 2442 (2836)
T ss_pred             ccEEEecCCCEecCCCEEEEEc
Confidence            4557899999999999999865

>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters)

Probab=84.41  E-value=0.92  Score=40.60  Aligned_cols=31  Identities=23%  Similarity=0.357  Sum_probs=28.4

Q ss_pred             CccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEE
Q 023761          202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIE  239 (277)
Q Consensus       202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IE  239 (277)
                      .|+||+.|++..       +++.+|+.|..|+.|+.|-
T Consensus        90 ~i~AP~dG~V~~-------~~~~~G~~v~~g~~l~~i~  120 (265)
T TIGR00999        90 EVRSPFDGYITQ-------KSVTLGDYVAPQAELFRVA  120 (265)
T ss_pred             EEECCCCeEEEE-------EEcCCCCEeCCCCceEEEE
Confidence            479999999999       8999999999999998764

>PRK12999 pyruvate carboxylase; Reviewed

Probab=83.94  E-value=1.2  Score=49.61  Aligned_cols=33  Identities=27%  Similarity=0.491  Sum_probs=30.7

Q ss_pred             eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          244 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       244 ~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ...|.||..|+|.+++++.||.|..||+|+.|+
T Consensus      1076 ~~~v~apm~G~v~~i~v~~Gd~V~~G~~L~~le 1108 (1146)
T PRK12999       1076 PGHVGAPMPGSVVTVLVKEGDEVKAGDPLAVIE 1108 (1146)
T ss_pred             CceEeCCceEEEEEEEcCCCCEECCCCEEEEEE
Confidence            356999999999999999999999999999986

>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

Probab=82.87  E-value=1.2  Score=44.18  Aligned_cols=35  Identities=34%  Similarity=0.528  Sum_probs=32.1

Q ss_pred             CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcc
Q 023761          200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM  241 (277)
Q Consensus       200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEam  241 (277)
                      ...|.+|..|++.+       +++++|+.|..|++|+.|+..
T Consensus        43 ~~ei~a~~~G~v~~-------i~~~eG~~v~vG~~l~~i~~~   77 (403)
T TIGR01347        43 VLEVPSPADGVLQE-------ILFKEGDTVESGQVLAILEEG   77 (403)
T ss_pred             eeEEecCCCEEEEE-------EEeCCCCEeCCCCEEEEEecC
Confidence            35799999999999       999999999999999999864

dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.

>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

Probab=82.68  E-value=1.3  Score=43.91  Aligned_cols=35  Identities=31%  Similarity=0.426  Sum_probs=32.5

Q ss_pred             CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcc
Q 023761          200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM  241 (277)
Q Consensus       200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEam  241 (277)
                      ...|-||..|++..       +++++||.|.-|++||.|+..
T Consensus        45 ~~EV~ap~~G~l~~-------i~~~~G~~V~Vg~~I~~i~~~   79 (404)
T COG0508          45 TMEVPAPDAGVLAK-------ILVEEGDTVPVGAVIARIEEE   79 (404)
T ss_pred             eEEecCCCCeEEEE-------EeccCCCEEcCCCeEEEEecC
Confidence            34799999999999       999999999999999999885

>TIGR02876 spore_yqfD sporulation protein YqfD

Probab=82.38  E-value=2.6  Score=41.32  Aligned_cols=36  Identities=31%  Similarity=0.419  Sum_probs=29.6

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEE
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLC  236 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~  236 (277)
                      ..|.|-..|.+.+----...+.|++||.|++||+|.
T Consensus       187 ~~lVA~kdGvI~~i~v~~G~p~Vk~GD~VkkGqvLI  222 (382)
T TIGR02876       187 RNIVAKKDGVIKRVYVTSGEPVVKKGDVVKKGDLLI  222 (382)
T ss_pred             ccEEECCCCEEEEEEEcCCeEEEccCCEEcCCCEEE
Confidence            468888889888755555668899999999999986

YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.

>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]

Probab=81.99  E-value=0.99  Score=44.55  Aligned_cols=35  Identities=31%  Similarity=0.383  Sum_probs=32.3

Q ss_pred             CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcc
Q 023761          200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM  241 (277)
Q Consensus       200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEam  241 (277)
                      .+.|.+|..|++..       .+|++||+|..||-|+.|+..
T Consensus       115 tv~V~sP~sGvi~e-------~lvk~gdtV~~g~~la~i~~g  149 (457)
T KOG0559|consen  115 TVEVPSPASGVITE-------LLVKDGDTVTPGQKLAKISPG  149 (457)
T ss_pred             eeeccCCCcceeeE-------EecCCCCcccCCceeEEecCC
Confidence            45799999999999       999999999999999999875

>PRK03934 phosphatidylserine decarboxylase; Provisional

Probab=80.01  E-value=2.4  Score=39.52  Aligned_cols=71  Identities=14%  Similarity=0.043  Sum_probs=47.5

Q ss_pred             CccCCccEEEEecC---------CCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeE
Q 023761          202 PLKCPMAGTFYRSP---------APGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPL  272 (277)
Q Consensus       202 ~I~APm~G~~~~sp---------~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL  272 (277)
                      .|.|-++|.+...-         ......++..|+.|++||.++.++-.- ...+--|.+ .+ ++.++.|+.|..|+.|
T Consensus       186 ~VgA~~Vg~I~~~~~~~~~~~~~~r~i~~~~~~~~~v~kGee~G~F~fGS-TVvllf~~~-~~-~~~v~~g~~V~~Ge~i  262 (265)
T PRK03934        186 FVGALNVGKMRFNFDERIQTNAKARFIQTYEYENLKLKKGEELGNFEMGS-TIVLFSQKG-SL-EFNLKAGKSVKFGESI  262 (265)
T ss_pred             EEeeEEeeEEEEEeccccccCcccCceeeeccCCceEccccEeeEEccCC-EEEEEEeCC-cc-eEccCCCCEEEcchhh
Confidence            55666777776321         111112345699999999999999754 333444433 33 5789999999999999


Q ss_pred             EEE
Q 023761          273 FVI  275 (277)
Q Consensus       273 ~~I  275 (277)
                      ..|
T Consensus       263 g~~  265 (265)
T PRK03934        263 GEI  265 (265)
T ss_pred             ccC
Confidence            764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	277
1a6x_A	87	Structure Of The Apo-Biotin Carboxyl Carrier Protei		3e-19
3bdo_A	82	Solution Structure Of Apo-Biotinyl Domain From Acet		3e-19
1bdo_A	80	Structure Of The Biotinyl Domain Of Acetyl-Coenzyme		3e-19
3n6r_A	681	Crystal Structure Of The Holoenzyme Of Propionyl-co		3e-06
2d5d_A	74	Structure Of Biotin Carboxyl Carrier Protein (74val		7e-06
2jku_A	94	Crystal Structure Of The N-Terminal Region Of The B		1e-05
1z6h_A	72	Solution Structure Of Bacillus Subtilis Blap Biotin		5e-04
2ejm_A	99	Solution Structure Of Ruh-072, An Apo-Biotnyl Domai		7e-04

>pdb|1A6X|A Chain A, Structure Of The Apo-Biotin Carboxyl Carrier Protein (Apo- Bccp87) Of Escherichia Coli Acetyl-Coa Carboxylase, Nmr, 49 Structures Length = 87

Iteration: 1
 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 40/74 (54%), Positives = 54/74 (72%)
Query: 203 LKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAED 262
           ++ PM GTFYR+P+P    F++VG +V  G  LCI+EAMK+MN+IEAD+SGT+  I+ E 
Sbjct: 14  VRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVES 73
Query: 263 RKPVSVDTPLFVIE 276
            +PV  D PL VIE
Sbjct: 74  GQPVEFDEPLVVIE 87

>pdb|3BDO|A Chain A, Solution Structure Of Apo-Biotinyl Domain From Acetyl Coenzyme A Carboxylase Of Escherichia Coli Determined By Triple-Resonance Nmr Spectroscopy Length = 82

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 40/74 (54%), Positives = 54/74 (72%)
Query: 203 LKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAED 262
           ++ PM GTFYR+P+P    F++VG +V  G  LCI+EAMK+MN+IEAD+SGT+  I+ E 
Sbjct: 9   VRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVES 68
Query: 263 RKPVSVDTPLFVIE 276
            +PV  D PL VIE
Sbjct: 69  GQPVEFDEPLVVIE 82

>pdb|1BDO|A Chain A, Structure Of The Biotinyl Domain Of Acetyl-Coenzyme A Carboxylase Determined By Mad Phasing Length = 80

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 40/74 (54%), Positives = 54/74 (72%)
Query: 203 LKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAED 262
           ++ PM GTFYR+P+P    F++VG +V  G  LCI+EAMK+MN+IEAD+SGT+  I+ E 
Sbjct: 7   VRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVES 66
Query: 263 RKPVSVDTPLFVIE 276
            +PV  D PL VIE
Sbjct: 67  GQPVEFDEPLVVIE 80

>pdb|3N6R|A Chain A, Crystal Structure Of The Holoenzyme Of Propionyl-coa Carboxylase (pcc) Length = 681

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 12/82 (14%)
Query: 200 LPP-----LKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGT 254
           LPP     L CPM G   +         V+VG  VQ+GQ LC IEAMK+ N + A++ G 
Sbjct: 607 LPPDTSKMLLCPMPGLIVKVD-------VEVGQEVQEGQALCTIEAMKMENILRAEKKGV 659
Query: 255 IVEIIAEDRKPVSVDTPLFVIE 276
           + +I A     ++VD  +   E
Sbjct: 660 VAKINASAGNSLAVDDVIMEFE 681

>pdb|2D5D|A Chain A, Structure Of Biotin Carboxyl Carrier Protein (74val Start) From Pyrococcus Horikoshi Ot3 Ligand Free Form Ii Length = 74

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 205 CPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK 264
            PM G   R         V+VGDRV+ GQ L ++EAMK+ NEI + R G +  I+ ++ +
Sbjct: 10  APMPGKVLRV-------LVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGE 62
Query: 265 PVSVDTPLF 273
            V    PL 
Sbjct: 63  AVDTGQPLI 71

>pdb|2JKU|A Chain A, Crystal Structure Of The N-Terminal Region Of The Biotin Acceptor Domain Of Human Propionyl-Coa Carboxylase Length = 94

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 207 MAGTFYRSPAPGEPPFVKV--GDRVQKGQVLCIIEAMKLMNEIEADRSGTI 255
           M  +  RSP PG    V V  GD V +GQ +C+IEAMK+ N + A ++GT+
Sbjct: 23  MTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTV 73

>pdb|1Z6H|A Chain A, Solution Structure Of Bacillus Subtilis Blap Biotinylated- Form Length = 72

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 7/54 (12%)
Query: 205 CPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEI 258
             MAG  ++         VK GD+++KGQ + I+E+MK+   I ADRSG + E+
Sbjct: 4   IQMAGNLWK-------VHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEV 50

>pdb|2EJM|A Chain A, Solution Structure Of Ruh-072, An Apo-Biotnyl Domain Form Human Acetyl Coenzyme A Carboxylase Length = 99

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 205 CPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK 264
            PM GT        E  FVK GD+V+ G  L ++ AMK+ + I++ + GT+ ++   +  
Sbjct: 19  APMTGTI-------EKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGA 71
Query: 265 PVSVDTPLFVIE 276
             +  TPL   E
Sbjct: 72  QANRHTPLVEFE 83

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	277
1bdo_A	80	Acetyl-COA carboxylase; BCCPSC, carboxyl transfera	2e-42
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	6e-17
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	3e-15
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	4e-15
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	1e-14
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	2e-13
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	2e-13
3u9t_A	675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	2e-13
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	3e-13
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	2e-12
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	7e-11
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	1e-09
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	2e-09
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	2e-09
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	6e-09
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	3e-08
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	9e-07
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	4e-06
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	3e-05
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	3e-05
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	4e-05
3na6_A	331	Succinylglutamate desuccinylase/aspartoacylase; st	5e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	7e-05
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	8e-05
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	9e-05
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	2e-04
2qj8_A	332	MLR6093 protein; structural genomics, joint center	3e-04

>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A Length = 80

 Score =  139 bits (352), Expect = 2e-42
 Identities = 40/74 (54%), Positives = 54/74 (72%)

Query: 203 LKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAED 262
           ++ PM GTFYR+P+P    F++VG +V  G  LCI+EAMK+MN+IEAD+SGT+  I+ E 
Sbjct: 7   VRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVES 66

Query: 263 RKPVSVDTPLFVIE 276
            +PV  D PL VIE
Sbjct: 67  GQPVEFDEPLVVIE 80

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A Length = 718

 Score = 79.7 bits (197), Expect = 6e-17
 Identities = 22/118 (18%), Positives = 36/118 (30%), Gaps = 23/118 (19%)

Query: 159 PPPVMPPTQPAPAPTSSAPSASPAPPASPPSSTAGKSVKSSLPPLKCPMAGTFYRSPAPG 218
              ++     A       P A                       +  PM G         
Sbjct: 624 LRSILVKDTQAMKEMHFHPKALKDVKG----------------QIGAPMPGKVID----- 662

Query: 219 EPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276
               V  G +V KGQ LC++ AMK+   + +   GT+ ++       +  D  +  IE
Sbjct: 663 --IKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEIE 718

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens} Length = 94

 Score = 68.6 bits (168), Expect = 3e-15
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 7/74 (9%)

Query: 203 LKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAED 262
           L+ PM G             VK GD V +GQ +C+IEAMK+ N + A ++GT+  +  + 
Sbjct: 28  LRSPMPGVVVAV-------SVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQA 80

Query: 263 RKPVSVDTPLFVIE 276
              V     L  +E
Sbjct: 81  GDTVGEGDLLVELE 94

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* Length = 72

 Score = 67.6 bits (166), Expect = 4e-15
 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 7/75 (9%)

Query: 203 LKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAED 262
           +   MAG  ++         VK GD+++KGQ + I+E+MK+   I ADRSG + E+  ++
Sbjct: 2   VSIQMAGNLWKV-------HVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKE 54

Query: 263 RKPVSVDTPLFVIEP 277
              V+    L  +  
Sbjct: 55  GDFVNEGDVLLELSN 69

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A Length = 74

 Score = 66.5 bits (163), Expect = 1e-14
 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 7/73 (9%)

Query: 203 LKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAED 262
           +  PM G   R         V+VGDRV+ GQ L ++EAMK+ NEI + R G +  I+ ++
Sbjct: 8   VSAPMPGKVLRV-------LVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKE 60

Query: 263 RKPVSVDTPLFVI 275
            + V    PL  +
Sbjct: 61  GEAVDTGQPLIEL 73

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Length = 1236

 Score = 69.3 bits (170), Expect = 2e-13
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 7/91 (7%)

Query: 185  ASPPSSTAGKSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLM 244
            +        +        L     G F++       P   VGD V+ G  + IIEAMK  
Sbjct: 1152 SGDDKPQDVEEYPDDAELLYSEYTGRFWK-------PVAAVGDHVEAGDGVIIIEAMKTE 1204

Query: 245  NEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 275
              + A +SG + +I+ ++   V     + VI
Sbjct: 1205 MVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A Length = 77

 Score = 63.4 bits (155), Expect = 2e-13
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 7/73 (9%)

Query: 203 LKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAED 262
           +  P+AGT  +         VK GD V+ GQ + ++EAMK+  EI A   G + +++ ++
Sbjct: 11  IPAPLAGTVSKI-------LVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKE 63

Query: 263 RKPVSVDTPLFVI 275
           R  V     L  I
Sbjct: 64  RDAVQGGQGLIKI 76

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens} Length = 99

 Score = 63.6 bits (155), Expect = 3e-13
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 7/89 (7%)

Query: 189 SSTAGKSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIE 248
           S ++G S + +      PM GT  +        FVK GD+V+ G  L ++ AMK+ + I+
Sbjct: 3   SGSSGVSSQETQGGPLAPMTGTIEKV-------FVKAGDKVKAGDSLMVMIAMKMEHTIK 55

Query: 249 ADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277
           + + GT+ ++   +    +  TPL   E 
Sbjct: 56  SPKDGTVKKVFYREGAQANRHTPLVEFEE 84

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Length = 681

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 15/105 (14%)

Query: 172 PTSSAPSASPAPPASPPSSTAGKSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQK 231
            T      +   P   P  T+          L CPM G   +         V+VG  VQ+
Sbjct: 592 RTPRQAELARLMPEKLPPDTSKM--------LLCPMPGLIVKV-------DVEVGQEVQE 636

Query: 232 GQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276
           GQ LC IEAMK+ N + A++ G + +I A     ++VD  +   E
Sbjct: 637 GQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE 681

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} Length = 84

 Score = 56.6 bits (137), Expect = 7e-11
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 8/75 (10%)

Query: 203 LKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAED 262
           L+ P AG   +         V+ G  V+ G     +E MK++  +     G  V+ I   
Sbjct: 8   LRSPSAGKLTQ-------YTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGR-VKYIKRP 59

Query: 263 RKPVSVDTPLFVIEP 277
              +     +  +E 
Sbjct: 60  GAVLEAGCVVARLEL 74

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* Length = 1150

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 214  SPAPGE--PPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTP 271
            +  PG      V VG+ V+  Q L I EAMK+   I+A   G I ++   +   ++    
Sbjct: 1082 AQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDL 1141

Query: 272  LFVIEP 277
            L  IE 
Sbjct: 1142 LIEIEK 1147

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 53.2 bits (128), Expect = 2e-09
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 8/75 (10%)

Query: 203 LKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAED 262
           L+ P AG   +         V+ G  V+ G     +E MK++  +     G  V+ I   
Sbjct: 20  LRSPSAGKLTQY-------TVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGR-VKYIKRP 71

Query: 263 RKPVSVDTPLFVIEP 277
              +     +  +E 
Sbjct: 72  GAVLEAGCVVARLEL 86

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* Length = 1165

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 7/72 (9%)

Query: 205  CPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK 264
             PM G   R        FV  G  V  G VL  IEAMK+   I A++ GTI E++ +   
Sbjct: 1100 APMPGVISRV-------FVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGD 1152

Query: 265  PVSVDTPLFVIE 276
             +     L V  
Sbjct: 1153 QIDAKDLLAVYG 1164

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum} Length = 77

 Score = 50.7 bits (122), Expect = 6e-09
 Identities = 18/55 (32%), Positives = 29/55 (52%)

Query: 222 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276
            VK GD V+K Q L  +   K+  +I +   G IV+I+  + + V V + L  I+
Sbjct: 22  DVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQID 76

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A Length = 93

 Score = 49.6 bits (119), Expect = 3e-08
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 222 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276
           +VK GD V +   +C +++ K    I +   G I ++         V  PL  IE
Sbjct: 25  YVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIE 79

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428

 Score = 48.4 bits (116), Expect = 9e-07
 Identities = 17/55 (30%), Positives = 29/55 (52%)

Query: 222 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276
           FVK GD V +  VLC ++  K + EI +   G ++EI+  +    +V   L  ++
Sbjct: 23  FVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLD 77

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98

 Score = 43.4 bits (103), Expect = 4e-06
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 223 VKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAED-RKPVSVDTPLFVI 275
            K G+ V  G  LC IE  K +  ++A   G + +I+ E+  K + + + + +I
Sbjct: 29  KKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLI 82

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* Length = 87

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 222 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAED-RKPVSVDTPLFVI 275
             KVG+++ +G +L  IE        E    G + +I+  +  + V + TPL +I
Sbjct: 26  EKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCII 80

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} Length = 108

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 9/55 (16%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 222 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAED-RKPVSVDTPLFVI 275
             K GD++ +G ++  +E  K     E+     + +I+  +  + V +   + + 
Sbjct: 28  EKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICIT 82

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A Length = 128

 Score = 41.3 bits (97), Expect = 4e-05
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 222 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAED-RKPVSVDTPLFVI 275
             KVG+++ +G +L  IE  K     E    G + +I+  +  + V + TPL +I
Sbjct: 48  EKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCII 102

>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP} Length = 331

 Score = 42.9 bits (100), Expect = 5e-05
 Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 201 PPLKCPMAGTFYRSPAPGE-PPFVKVGDRVQKGQVLCIIEAM----KLMNEIEADRSGTI 255
             L  P    +  S   G     + +G+ VQ+G ++  + +     +   E  A RSG +
Sbjct: 249 VTLDMPDGDCYLFSEHDGLFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVL 308

Query: 256 V 256
           +
Sbjct: 309 I 309

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 42.9 bits (100), Expect = 7e-05
 Identities = 16/85 (18%), Positives = 19/85 (22%)

Query: 137 RKKEALPQPPAPASMAMMHSPSPPPVMPPTQPAPAPTSSAPSASPAPPASPPSSTAGKSV 196
            KK   PQ              P   MPP  PA A  S      P   A P         
Sbjct: 4   HKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLT 63

Query: 197 KSSLPPLKCPMAGTFYRSPAPGEPP 221
            +     +     T   +       
Sbjct: 64  PAQEQLHQQIDQATTSMNDMHLHNV 88

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A Length = 79

 Score = 39.2 bits (92), Expect = 8e-05
 Identities = 14/56 (25%), Positives = 27/56 (48%)

Query: 222 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277
             K G+ V++ +++  IE  K++ E+ A+  G I EI+  +   V     L  +  
Sbjct: 22  HKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE 77

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1 Length = 80

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 14/55 (25%), Positives = 26/55 (47%)

Query: 222 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276
             K GD V + +VL  IE  K++ E+ A   G +  ++ ++   V+    L  + 
Sbjct: 23  HKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLR 77

>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti} Length = 332

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 18/83 (21%), Positives = 26/83 (31%), Gaps = 12/83 (14%)

Query: 178 SASPAPPASPPSSTAGKSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCI 237
                 P      T      +S   LK P  G F         P   V D V++G V+ +
Sbjct: 235 KGKAEYPTFRQQKTGQTLETTSSDQLKSPSPGIFE--------PRCSVMDEVEQGDVVGV 286

Query: 238 IEAM----KLMNEIEADRSGTIV 256
           +  M        +I A    T+ 
Sbjct: 287 LHPMGSLSAASIDIRAQSKSTVF 309

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	277
1bdo_A	80	Acetyl-COA carboxylase; BCCPSC, carboxyl transfera	99.69
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	99.61
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	99.6
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	99.57
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	99.56
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	99.56
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	99.56
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	99.55
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	99.53
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	99.52
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	99.52
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	99.5
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	99.5
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	99.5
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	99.49
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	99.49
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	99.48
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	99.47
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	99.46
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	99.44
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	99.43
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	99.43
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	99.42
3u9t_A	675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	99.38
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	99.24
1zko_A	136	Glycine cleavage system H protein; TM0212, structu	99.23
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	99.21
2k32_A	116	A; NMR {Campylobacter jejuni} PDB: 2k33_A*	99.17
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	99.14
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	99.13
1hpc_A	131	H protein of the glycine cleavage system; transit	98.82
3a7l_A	128	H-protein, glycine cleavage system H protein; lipo	98.79
1onl_A	128	Glycine cleavage system H protein; hybrid barrel-s	98.77
3lnn_A	359	Membrane fusion protein (MFP) heavy metal cation Z	98.57
2f1m_A	277	Acriflavine resistance protein A; helical hairpin,	98.49
3ne5_B	413	Cation efflux system protein CUSB; transmembrane h	98.49
3fpp_A	341	Macrolide-specific efflux protein MACA; hexameric	98.48
1vf7_A	369	Multidrug resistance protein MEXA; alpha hairpin,	98.35
3klr_A	125	Glycine cleavage system H protein; antiparallel be	98.15
4dk0_A	369	Putative MACA; alpha-hairpin, lipoyl, beta-barrel,	98.09
3mxu_A	143	Glycine cleavage system H protein; seattle structu	98.01
3na6_A	331	Succinylglutamate desuccinylase/aspartoacylase; st	97.98
3tzu_A	137	GCVH, glycine cleavage system H protein 1; ssgcid,	97.88
3cdx_A	354	Succinylglutamatedesuccinylase/aspartoacylase; str	97.78
3fmc_A	368	Putative succinylglutamate desuccinylase / aspart;	97.7
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	97.56
3hgb_A	155	Glycine cleavage system H protein; ssgcid, niaid,	97.54
1ax3_A	162	Iiaglc, glucose permease IIA domain; phosphotransf	97.49
1f3z_A	161	EIIA-GLC, glucose-specific phosphocarrier; phospho	97.45
2gpr_A	154	Glucose-permease IIA component; phosphotransferase	97.42
2qj8_A	332	MLR6093 protein; structural genomics, joint center	97.05
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	96.89
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	96.8
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	96.64
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	96.51
2xha_A	193	NUSG, transcription antitermination protein NUSG;	96.48
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	96.06
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	96.04
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	96.01
1bdo_A	80	Acetyl-COA carboxylase; BCCPSC, carboxyl transfera	95.97
3fpp_A	341	Macrolide-specific efflux protein MACA; hexameric	95.89
3lnn_A	359	Membrane fusion protein (MFP) heavy metal cation Z	95.86
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	95.84
2xhc_A	352	Transcription antitermination protein NUSG; 2.45A	95.83
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	95.47
3our_B	183	EIIA, phosphotransferase system IIA component; exh	95.45
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	95.31
1vf7_A	369	Multidrug resistance protein MEXA; alpha hairpin,	95.23
2gpr_A	154	Glucose-permease IIA component; phosphotransferase	95.16
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	94.86
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	94.85
4dk0_A	369	Putative MACA; alpha-hairpin, lipoyl, beta-barrel,	94.68
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	94.59
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	94.57
3ne5_B	413	Cation efflux system protein CUSB; transmembrane h	94.48
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	94.33
2xha_A	193	NUSG, transcription antitermination protein NUSG;	94.25
3d4r_A	169	Domain of unknown function from the PFAM-B_34464;	94.13
2auk_A	190	DNA-directed RNA polymerase beta' chain; sandwich-	93.99
1ax3_A	162	Iiaglc, glucose permease IIA domain; phosphotransf	93.96
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	93.84
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	93.71
1f3z_A	161	EIIA-GLC, glucose-specific phosphocarrier; phospho	93.24
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	92.85
2k32_A	116	A; NMR {Campylobacter jejuni} PDB: 2k33_A*	92.68
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	92.3
2bco_A	350	Succinylglutamate desuccinylase; NESG, VPR14, stru	92.09
3lu0_D	1407	DNA-directed RNA polymerase subunit beta'; E. coli	90.28
2xhc_A	352	Transcription antitermination protein NUSG; 2.45A	89.74
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	89.56
3our_B	183	EIIA, phosphotransferase system IIA component; exh	89.21
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	88.89
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	88.35
3u9t_A	675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	87.8
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	86.39
2f1m_A	277	Acriflavine resistance protein A; helical hairpin,	84.65
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	82.87
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	81.85

>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A

Probab=99.69  E-value=1e-16  Score=120.09  Aligned_cols=76  Identities=53%  Similarity=0.976  Sum_probs=73.1

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ..|++|+.|++++.+.+...|++++||.|++||+|+.||+||+..+|+||++|+|.++++++|+.|..|++|++|+
T Consensus         5 ~~v~a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~   80 (80)
T 1bdo_A            5 HIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE   80 (80)
T ss_dssp             EEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred             eEEEcCCCeEEEEecccCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence            3699999999999888899999999999999999999999999999999999999999999999999999999985

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*

Probab=99.61  E-value=2.2e-15  Score=110.00  Aligned_cols=69  Identities=33%  Similarity=0.529  Sum_probs=66.3

Q ss_pred             CccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761          202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP  277 (277)
Q Consensus       202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep  277 (277)
                      .|+||+.|++.+       |++++||.|++||+|+.||++++..+|+||++|+|.+++++.|+.|..|++|++|.+
T Consensus         1 ~v~a~~~G~v~~-------~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~V~~G~~l~~i~~   69 (72)
T 1z6h_A            1 TVSIQMAGNLWK-------VHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSN   69 (72)
T ss_dssp             CEECCSSEEEEE-------ECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCEECTTCEEEEEGG
T ss_pred             CEECcccEEEEE-------EEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCEECCCCEEEEEeC
Confidence            378999999999       999999999999999999999999999999999999999999999999999999863

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}

Probab=99.60  E-value=1.5e-15  Score=115.85  Aligned_cols=69  Identities=20%  Similarity=0.294  Sum_probs=66.3

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP  277 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep  277 (277)
                      ..|.||+.|++++       |+|++||.|++||+||.||+||+..+|+||++|+|.+++ +.|+.|..|++|++|.+
T Consensus         6 ~~v~a~~~G~v~~-------~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~V~~G~~l~~i~~   74 (84)
T 2kcc_A            6 TVLRSPSAGKLTQ-------YTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAVLEAGCVVARLEL   74 (84)
T ss_dssp             TEECCSSSCCEEE-------ESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCCCCTTCCCEEEEC
T ss_pred             ceEECCCCEEEEE-------EECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCEECCCCEEEEEeC
Confidence            3699999999999       999999999999999999999999999999999999999 99999999999999863

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A

Probab=99.57  E-value=9e-15  Score=109.40  Aligned_cols=66  Identities=24%  Similarity=0.288  Sum_probs=63.1

Q ss_pred             CCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761          205 CPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP  277 (277)
Q Consensus       205 APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep  277 (277)
                      +++.|++.+       |+|++||.|++||+||.||+||+..+|+||++|+|.+++++.|+.|..|++|++|.+
T Consensus        12 ~~~~G~i~~-------~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~   77 (79)
T 1ghj_A           12 SIADGTVAT-------WHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE   77 (79)
T ss_dssp             SCSCEEECC-------CSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred             CCCCEEEEE-------EEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence            357999999       999999999999999999999999999999999999999999999999999999864

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A

Probab=99.56  E-value=1.2e-14  Score=107.57  Aligned_cols=71  Identities=32%  Similarity=0.523  Sum_probs=67.8

Q ss_pred             CCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          199 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       199 ~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      +...|.+|+.|++.+       |++++||.|++||+|+.|+.+++..+|+||++|+|.+++++.|+.|..|++|++|+
T Consensus         7 ~~~~v~a~~~G~v~~-------~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~v~~G~~l~~i~   77 (77)
T 1dcz_A            7 GEGEIPAPLAGTVSK-------ILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG   77 (77)
T ss_dssp             CSSEEEBSSSCEEEE-------ECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred             CCeEEECCCCEEEEE-------EEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCEECCCCEEEEEC
Confidence            345799999999999       99999999999999999999999999999999999999999999999999999985

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=1e-14  Score=114.41  Aligned_cols=69  Identities=20%  Similarity=0.312  Sum_probs=66.5

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP  277 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep  277 (277)
                      ..|.+|+.|++.+       |+|++||.|++||+|+.||+||+..+|+||++|+|. ++++.|+.|..|++|++|.+
T Consensus        18 ~~v~a~~~G~v~~-------~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~V~~G~~l~~i~~   86 (100)
T 2dn8_A           18 TVLRSPSAGKLTQ-------YTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAVLEAGCVVARLEL   86 (100)
T ss_dssp             TEEECSSCEEEEE-------ESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCEECSSCEEEEECC
T ss_pred             cEEeCCCCEEEEE-------EEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCEECCCCEEEEEEc
Confidence            4799999999999       999999999999999999999999999999999999 99999999999999999863

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A

Probab=99.56  E-value=1.4e-14  Score=105.79  Aligned_cols=69  Identities=38%  Similarity=0.647  Sum_probs=66.7

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ..|.+|+.|++.+       |++++||.|++||+|+.|+.+++..+|+||++|+|.+++++.|+.|..|++|++|+
T Consensus         6 ~~v~a~~~G~v~~-------~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~   74 (74)
T 2d5d_A            6 NVVSAPMPGKVLR-------VLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIELG   74 (74)
T ss_dssp             CEEECSSCEEEEE-------ECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred             eEEecCCCEEEEE-------EEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEC
Confidence            4699999999999       99999999999999999999999999999999999999999999999999999985

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*

Probab=99.55  E-value=1e-14  Score=111.58  Aligned_cols=64  Identities=28%  Similarity=0.400  Sum_probs=61.8

Q ss_pred             CccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCC-ccCCCCeEEEEc
Q 023761          206 PMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK-PVSVDTPLFVIE  276 (277)
Q Consensus       206 Pm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd-~V~~GqpL~~Ie  276 (277)
                      ...|++.+       |+|++||.|++||+||+||+||+.++|+||++|+|.+++++.|+ .|..|++|++|+
T Consensus        17 ~~~G~v~~-------~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~   81 (87)
T 3crk_C           17 MTMGTVQR-------WEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIV   81 (87)
T ss_dssp             CCEEEEEE-------ECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEE
T ss_pred             CCcEEEEE-------EEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeEECCCCEEEEEE
Confidence            36899999       99999999999999999999999999999999999999999999 899999999986

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}

Probab=99.53  E-value=1.7e-14  Score=107.27  Aligned_cols=65  Identities=31%  Similarity=0.343  Sum_probs=62.9

Q ss_pred             CCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          205 CPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       205 APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      +++.|++.+       |+|++||.|++||+||.||++|+..+|+||++|+|.+++++.|+.|..|++|++|+
T Consensus        12 ~~~~G~v~~-------~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~   76 (77)
T 2l5t_A           12 GVTEGEIVR-------WDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQID   76 (77)
T ss_dssp             SCCCEEEEE-------CSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCEECSCSEEEEEE
T ss_pred             CCccEEEEE-------EEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCEECCCCEEEEEE
Confidence            468999999       99999999999999999999999999999999999999999999999999999986

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A

Probab=99.52  E-value=1.8e-14  Score=112.13  Aligned_cols=64  Identities=25%  Similarity=0.265  Sum_probs=61.9

Q ss_pred             ccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761          207 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP  277 (277)
Q Consensus       207 m~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep  277 (277)
                      ..|++.+       |+|++||.|++||+||.||+||+.++|+||++|+|.+++++.|+.|..|++|++|++
T Consensus        17 ~~G~v~~-------~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~   80 (93)
T 1k8m_A           17 REVTVKE-------WYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIET   80 (93)
T ss_dssp             CCEEEEE-------ECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEEC
T ss_pred             CCEEEEE-------EEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEec
Confidence            6899999       999999999999999999999999999999999999999999999999999999863

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=2.1e-14  Score=112.99  Aligned_cols=64  Identities=23%  Similarity=0.384  Sum_probs=61.6

Q ss_pred             ccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCcc-CCCCeEEEEcC
Q 023761          207 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPV-SVDTPLFVIEP  277 (277)
Q Consensus       207 m~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V-~~GqpL~~Iep  277 (277)
                      ..|++.+       |+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+.| ..|++|++|++
T Consensus        20 ~~G~i~~-------~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i~~   84 (98)
T 2dnc_A           20 EEGNIVK-------WLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVE   84 (98)
T ss_dssp             SEECEEE-------ESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCCCEESSCEEEEEEC
T ss_pred             ccEEEEE-------EEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEEec
Confidence            5899999       9999999999999999999999999999999999999999999999 99999999863

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}

Probab=99.50  E-value=3.7e-14  Score=113.58  Aligned_cols=63  Identities=21%  Similarity=0.288  Sum_probs=61.2

Q ss_pred             ccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCC-ccCCCCeEEEEc
Q 023761          207 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK-PVSVDTPLFVIE  276 (277)
Q Consensus       207 m~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd-~V~~GqpL~~Ie  276 (277)
                      ..|++.+       |+|++||.|++||+||+||+||+.++|+||++|+|.+++++.|+ .|..|++|++|.
T Consensus        20 ~~G~v~~-------~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i~   83 (108)
T 2dne_A           20 QAGTIAR-------WEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITV   83 (108)
T ss_dssp             CEEEEEE-------CSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEEEE
T ss_pred             ccEEEEE-------EEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEEe
Confidence            5899999       99999999999999999999999999999999999999999999 899999999986

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}

Probab=99.50  E-value=3.5e-14  Score=144.39  Aligned_cols=71  Identities=38%  Similarity=0.623  Sum_probs=68.2

Q ss_pred             CCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          199 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       199 ~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      +...|+|||+|++++       |+|++||.|++||+|++||+|||.++|+||.+|+|.++++++||.|..|++|++|+
T Consensus       611 ~~~~v~ap~~G~v~~-------~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~  681 (681)
T 3n6r_A          611 TSKMLLCPMPGLIVK-------VDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE  681 (681)
T ss_dssp             CCSEEECCSCEEEEE-------ECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred             CCCeEECCCcEEEEE-------EEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence            345799999999999       99999999999999999999999999999999999999999999999999999985

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}

Probab=99.50  E-value=5.4e-14  Score=110.22  Aligned_cols=71  Identities=31%  Similarity=0.509  Sum_probs=67.9

Q ss_pred             CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761          200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP  277 (277)
Q Consensus       200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep  277 (277)
                      ...|.+|+.|++.+       |+|++||.|++||+|+.||.+|+..+|+||++|+|.+++++.|+.|..|++|++|.+
T Consensus        14 ~~~v~a~~~G~v~~-------~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i~~   84 (99)
T 2ejm_A           14 QGGPLAPMTGTIEK-------VFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEE   84 (99)
T ss_dssp             CSSCBCSSSEEEEE-------ECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEEECTTCBCEEECC
T ss_pred             ceEEecCCCEEEEE-------EECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCEECCCCEEEEEEC
Confidence            45799999999999       999999999999999999999999999999999999999999999999999999863

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}

Probab=99.49  E-value=6.5e-15  Score=114.60  Aligned_cols=70  Identities=34%  Similarity=0.545  Sum_probs=32.2

Q ss_pred             CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ...|.+|+.|++.+       |++++||.|++||+|+.||++|+..+|+||++|+|.+++++.|+.|..|++|++|+
T Consensus        25 ~~~v~a~~~G~v~~-------~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~ie   94 (94)
T 2jku_A           25 SSVLRSPMPGVVVA-------VSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE   94 (94)
T ss_dssp             CCCCCCSSSCEEEE-------ECCCTTCCCCTTCCCEEEEC------------------------------------
T ss_pred             ceEEECCCCEEEEE-------EECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCEECCCCEEEEEC
Confidence            34799999999999       99999999999999999999999999999999999999999999999999999885

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=99.49  E-value=6.4e-14  Score=104.63  Aligned_cols=63  Identities=25%  Similarity=0.297  Sum_probs=61.3

Q ss_pred             cEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761          208 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP  277 (277)
Q Consensus       208 ~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep  277 (277)
                      .|++.+       |+|++||.|++||+||.||++|+..+|+||++|+|.+++++.|+.|..|++|++|.+
T Consensus        14 ~G~v~~-------~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~   76 (80)
T 1qjo_A           14 EVEVTE-------VMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV   76 (80)
T ss_dssp             CEEEEE-------CCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEES
T ss_pred             CEEEEE-------EEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEc
Confidence            899999       999999999999999999999999999999999999999999999999999999863

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}

Probab=99.48  E-value=5.6e-15  Score=112.42  Aligned_cols=69  Identities=25%  Similarity=0.300  Sum_probs=65.5

Q ss_pred             CccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761          202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP  277 (277)
Q Consensus       202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep  277 (277)
                      .|+.|..|++.+       |+|++||.|++||+||.||+||+..+|+||++|+|.+++++.|+.|..|++|++|.+
T Consensus         4 ~i~~p~~G~v~~-------~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~~   72 (85)
T 2k7v_A            4 EVNVPDIVEVTE-------VMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV   72 (85)
T ss_dssp             CCCCCSCCCCCS-------CCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEEC
T ss_pred             EEECCCeEEEEE-------EEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEEc
Confidence            477888899999       999999999999999999999999999999999999999999999999999999863

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1

Probab=99.47  E-value=1.7e-14  Score=108.25  Aligned_cols=69  Identities=19%  Similarity=0.222  Sum_probs=65.4

Q ss_pred             CccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761          202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP  277 (277)
Q Consensus       202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep  277 (277)
                      .+.+++.|++.+       |++++||.|++||+||.||+||+..+|+||++|+|.+++++.|+.|..|++|++|.+
T Consensus         9 ~~g~~~~G~i~~-------~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~   77 (81)
T 1gjx_A            9 DIGGHENVDIIA-------VEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEA   77 (81)
T ss_dssp             CCSSCSSEEEEE-------ECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECC
T ss_pred             CCCCCCcEEEEE-------EEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEe
Confidence            355689999999       999999999999999999999999999999999999999999999999999999864

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A

Probab=99.46  E-value=1.3e-13  Score=114.15  Aligned_cols=63  Identities=30%  Similarity=0.440  Sum_probs=61.0

Q ss_pred             ccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCC-ccCCCCeEEEEc
Q 023761          207 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK-PVSVDTPLFVIE  276 (277)
Q Consensus       207 m~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd-~V~~GqpL~~Ie  276 (277)
                      ..|++.+       |+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ .|..|++|++|+
T Consensus        40 ~~G~V~~-------~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~i~  103 (128)
T 1y8o_B           40 TMGTVQR-------WEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIV  103 (128)
T ss_dssp             SEEEEEE-------ECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEE
T ss_pred             ccEEEEE-------EecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCeeecCCCEEEEEe
Confidence            5799999       99999999999999999999999999999999999999999998 899999999986

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}

Probab=99.44  E-value=1.7e-13  Score=147.47  Aligned_cols=71  Identities=31%  Similarity=0.470  Sum_probs=68.3

Q ss_pred             CCCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 023761          198 SSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI  275 (277)
Q Consensus       198 ~~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~I  275 (277)
                      .+...|+|||+|+|++       |+|++||.|++||+||+||+|||+++|+||++|+|.+|++++||.|.+|++|+.|
T Consensus      1165 ~~~~~v~ap~~G~v~~-------~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~V~~G~~l~~i 1235 (1236)
T 3va7_A         1165 DDAELLYSEYTGRFWK-------PVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235 (1236)
T ss_dssp             TTCEEEECSSCEEEEE-------ESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCEECTTCEEEEE
T ss_pred             CCCcEEeCCCcEEEEE-------EEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCEeCCCCEEEEe
Confidence            3456899999999999       9999999999999999999999999999999999999999999999999999987

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=99.43  E-value=2e-13  Score=145.91  Aligned_cols=73  Identities=29%  Similarity=0.382  Sum_probs=69.2

Q ss_pred             CCCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761          198 SSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP  277 (277)
Q Consensus       198 ~~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep  277 (277)
                      .+...|.|||.|++++       |+|++||.|++||+||+||+|||.++|+||++|+|.+|++++||.|..|++|+.|++
T Consensus      1075 ~~~~~v~ap~~G~v~~-------~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~V~~g~~l~~i~~ 1147 (1150)
T 3hbl_A         1075 SNPSHIGAQMPGSVTE-------VKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEK 1147 (1150)
T ss_dssp             TCSSEEECSSSEEEEE-------ECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCEECTTBEEEEEC-
T ss_pred             CCCceeecCceEEEEE-------EEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCEEEEEec
Confidence            3456899999999999       999999999999999999999999999999999999999999999999999999974

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A

Probab=99.43  E-value=1.9e-13  Score=102.13  Aligned_cols=61  Identities=20%  Similarity=0.338  Sum_probs=58.8

Q ss_pred             EEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761          210 TFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP  277 (277)
Q Consensus       210 ~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep  277 (277)
                      ++.+       |+|++||.|++||+||.||+||+..+|+||++|+|.+++++.|+.|..|++|++|.+
T Consensus        14 ~i~~-------~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~   74 (79)
T 1iyu_A           14 EVIE-------LLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEP   74 (79)
T ss_dssp             EEEE-------ECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEEC
T ss_pred             EEEE-------EecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEec
Confidence            7888       999999999999999999999999999999999999999999999999999999864

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=99.42  E-value=9.8e-15  Score=109.75  Aligned_cols=64  Identities=23%  Similarity=0.266  Sum_probs=61.7

Q ss_pred             ccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761          207 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP  277 (277)
Q Consensus       207 m~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep  277 (277)
                      ..|++.+       |+|++||.|++||+||.||+||+..+|+||++|+|.++++++|+.|..|++|++|++
T Consensus        15 ~~G~v~~-------~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~~   78 (80)
T 1pmr_A           15 ADATVAT-------WHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE   78 (80)
T ss_dssp             SCEECCB-------CCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred             ccEEEEE-------EECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence            6899999       999999999999999999999999999999999999999999999999999999864

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A

Probab=99.24  E-value=2.1e-12  Score=132.34  Aligned_cols=70  Identities=27%  Similarity=0.433  Sum_probs=67.3

Q ss_pred             CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ...|.|||.|++.+       |+|++||.|++||+||+||+|||.++|+||++|+|.++++++|+.|..|++|++|+
T Consensus       649 ~~~v~ap~~G~V~~-------v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~  718 (718)
T 3bg3_A          649 KGQIGAPMPGKVID-------IKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEIE  718 (718)
T ss_dssp             SSCEECSSCEEEEE-------ECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEEECSSCEEECBC
T ss_pred             CceEeCCCCeEEEE-------EEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCEeCCCCEEEEeC
Confidence            34799999999999       99999999999999999999999999999999999999999999999999999874

>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A

Probab=99.23  E-value=1.4e-12  Score=109.05  Aligned_cols=69  Identities=28%  Similarity=0.352  Sum_probs=59.5

Q ss_pred             CccCCccEEEEecCCCCCCCcc-cCCCEEecCCeEEEEEccceeeEEecCCCeEEEEE---ecCCCCccC---CCC-eEE
Q 023761          202 PLKCPMAGTFYRSPAPGEPPFV-KVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEI---IAEDRKPVS---VDT-PLF  273 (277)
Q Consensus       202 ~I~APm~G~~~~sp~p~~~~~V-kvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~I---lVe~Gd~V~---~Gq-pL~  273 (277)
                      .+.+|+.|.+..       ..+ ++||.|++||.||+||+||+.++|.||++|+|++|   ++++|+.|+   ||+ .|+
T Consensus        38 ~~a~~~lG~i~~-------V~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL~  110 (136)
T 1zko_A           38 NHAQEQLGDVVY-------VDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLF  110 (136)
T ss_dssp             HHHHHHHCSEEE-------EECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTHHHHCTTTTTCCE
T ss_pred             hhhcccCCCcEE-------EEecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccCcccCCCCCeEEE
Confidence            345566665544       222 99999999999999999999999999999999999   889999999   998 999


Q ss_pred             EEcC
Q 023761          274 VIEP  277 (277)
Q Consensus       274 ~Iep  277 (277)
                      +|++
T Consensus       111 ~i~~  114 (136)
T 1zko_A          111 KMEI  114 (136)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9874

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*

Probab=99.21  E-value=6.5e-12  Score=134.48  Aligned_cols=70  Identities=34%  Similarity=0.540  Sum_probs=61.1

Q ss_pred             CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ...|.|||.|++++       |+|++||.|++||+||+||+|||.++|+||.+|+|.++++++|+.|..|++|++|+
T Consensus      1095 ~~~v~ap~~G~v~~-------~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1164 (1165)
T 2qf7_A         1095 AAHVGAPMPGVISR-------VFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAVYG 1164 (1165)
T ss_dssp             TTEEECSSCEEEEE-------ECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCEECTTBEEEEC-
T ss_pred             CceeeCCCCeEEEE-------EEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCEECCCCEEEEec
Confidence            35799999999999       99999999999999999999999999999999999999999999999999999986

>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*

Probab=99.17  E-value=2.7e-11  Score=96.25  Aligned_cols=69  Identities=33%  Similarity=0.412  Sum_probs=63.3

Q ss_pred             CccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcccee-----------------------------eEEecCCC
Q 023761          202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLM-----------------------------NEIEADRS  252 (277)
Q Consensus       202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~-----------------------------~eI~Ap~s  252 (277)
                      .|.+++.|++.+       ++|++||.|++||+|+.|+..+..                             ..|+||++
T Consensus         3 ~v~a~~~G~V~~-------v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~   75 (116)
T 2k32_A            3 IIKPQVSGVIVN-------KLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFD   75 (116)
T ss_dssp             EECCSSCEEEEE-------ECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSS
T ss_pred             EEeCcCCEEEEE-------EECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCC
Confidence            588999999999       999999999999999999987544                             48999999


Q ss_pred             eEEEEEecCCCCccCCC-CeEEEEcC
Q 023761          253 GTIVEIIAEDRKPVSVD-TPLFVIEP  277 (277)
Q Consensus       253 G~V~~IlVe~Gd~V~~G-qpL~~Iep  277 (277)
                      |+|.++.++.|+.|..| ++|+.|.+
T Consensus        76 G~V~~~~~~~G~~v~~g~~~l~~i~~  101 (116)
T 2k32_A           76 GTIGDALVNIGDYVSASTTELVRVTN  101 (116)
T ss_dssp             EEECCCSCCTTCEECTTTSCCEEEEC
T ss_pred             EEEEEEECCCCCEEcCCCcEEEEEEC
Confidence            99999999999999999 99999853

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A

Probab=99.14  E-value=4.1e-12  Score=123.25  Aligned_cols=62  Identities=29%  Similarity=0.516  Sum_probs=0.0

Q ss_pred             cEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          208 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       208 ~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      .|++.+       |+|++||.|++||+||+||+||+.++|+||++|+|.+|++++|+.|..|++|+.|+
T Consensus        16 eg~i~~-------w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~   77 (428)
T 3dva_I           16 EGEIVK-------WFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLD   77 (428)
T ss_dssp             ---------------------------------------------------------------------
T ss_pred             cEEEEE-------EEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEe
Confidence            588888       99999999999999999999999999999999999999999999999999999985

>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*

Probab=98.82  E-value=1.8e-09  Score=89.54  Aligned_cols=68  Identities=18%  Similarity=0.250  Sum_probs=55.8

Q ss_pred             ccCCccEEEEecCCCCCCCcc-cCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEec---CCCCccC---CCC-eEEE
Q 023761          203 LKCPMAGTFYRSPAPGEPPFV-KVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIA---EDRKPVS---VDT-PLFV  274 (277)
Q Consensus       203 I~APm~G~~~~sp~p~~~~~V-kvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlV---e~Gd~V~---~Gq-pL~~  274 (277)
                      +..++.|.+..       ..+ ++||.|++||.||+||+||+.++|.||++|+|++++.   ++.+.|+   ||+ .||+
T Consensus        30 ~a~~~lG~i~~-------v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~  102 (131)
T 1hpc_A           30 HAQDHLGEVVF-------VELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIK  102 (131)
T ss_dssp             HHHHHHCSEEE-------EECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCEE
T ss_pred             hhcccCCCceE-------EEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhhhccCCCCCceEEE
Confidence            44567776655       333 9999999999999999999999999999999999985   4555674   777 8998


Q ss_pred             EcC
Q 023761          275 IEP  277 (277)
Q Consensus       275 Iep  277 (277)
                      |++
T Consensus       103 i~~  105 (131)
T 1hpc_A          103 IKP  105 (131)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            863

>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*

Probab=98.79  E-value=3e-09  Score=87.82  Aligned_cols=68  Identities=24%  Similarity=0.256  Sum_probs=56.2

Q ss_pred             ccCCccEEEEecCCCCCCCc-ccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEec---CCCCccC---CCC-eEEE
Q 023761          203 LKCPMAGTFYRSPAPGEPPF-VKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIA---EDRKPVS---VDT-PLFV  274 (277)
Q Consensus       203 I~APm~G~~~~sp~p~~~~~-VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlV---e~Gd~V~---~Gq-pL~~  274 (277)
                      +..++.|.+..       .. .++|+.|++||.||+||+||+.++|.||++|+|++++.   ++.+.|+   ||+ .||+
T Consensus        31 ~a~~~lG~i~~-------v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl~~  103 (128)
T 3a7l_A           31 HAQELLGDMVF-------VDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFK  103 (128)
T ss_dssp             HHHHHHCSEEE-------EECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHCTTTTTCCEE
T ss_pred             HHhccCCceEE-------EEecCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHHhccCCCCCccEEE
Confidence            44566666544       22 39999999999999999999999999999999999975   6677787   887 8998


Q ss_pred             EcC
Q 023761          275 IEP  277 (277)
Q Consensus       275 Iep  277 (277)
                      |++
T Consensus       104 i~~  106 (128)
T 3a7l_A          104 IKA  106 (128)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            864

>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1

Probab=98.77  E-value=3.7e-09  Score=87.30  Aligned_cols=54  Identities=30%  Similarity=0.496  Sum_probs=48.8

Q ss_pred             cCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEec---CCCCcc---CCCC-eEEEEcC
Q 023761          224 KVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIA---EDRKPV---SVDT-PLFVIEP  277 (277)
Q Consensus       224 kvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlV---e~Gd~V---~~Gq-pL~~Iep  277 (277)
                      ++||+|++||.||+||+||+.++|.||++|+|++++.   ++.+.|   .||+ .||+|++
T Consensus        45 ~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~~  105 (128)
T 1onl_A           45 EVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPELVNQDPYGEGWIFRLKP  105 (128)
T ss_dssp             CTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEE
T ss_pred             CCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhhhccCCCCCccEEEEEE
Confidence            9999999999999999999999999999999999975   566777   7887 9998863

>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}

Probab=98.57  E-value=9.5e-08  Score=88.08  Aligned_cols=71  Identities=23%  Similarity=0.354  Sum_probs=63.8

Q ss_pred             CCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccce-----------------------------------
Q 023761          199 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKL-----------------------------------  243 (277)
Q Consensus       199 ~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~-----------------------------------  243 (277)
                      ....|.+++.|++..       ++|++||.|++||+|+.|+...+                                   
T Consensus        56 ~~~~v~~~~~G~V~~-------v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~  128 (359)
T 3lnn_A           56 KLVKVLPPLAGRIVS-------LNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAK  128 (359)
T ss_dssp             SEEEECCSSCEEEEE-------CCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCC
T ss_pred             cEEEEeccCCEEEEE-------EEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchH
Confidence            345799999999999       99999999999999999987542                                   


Q ss_pred             -----------------------------------------eeEEecCCCeEEEEEecCCCCccCC-CCeEEEEc
Q 023761          244 -----------------------------------------MNEIEADRSGTIVEIIAEDRKPVSV-DTPLFVIE  276 (277)
Q Consensus       244 -----------------------------------------~~eI~Ap~sG~V~~IlVe~Gd~V~~-GqpL~~Ie  276 (277)
                                                               ...|+||++|+|..+.++.|+.|.. |++|++|.
T Consensus       129 ~~~~~a~~~~~~a~a~l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~~g~~l~~i~  203 (359)
T 3lnn_A          129 RDFEQAQSDYDQAASESQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAYWNDTTASLMTVA  203 (359)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCEECCSSCCSEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCceeCCCCcceEEEe
Confidence                                                     3579999999999999999999999 99999874

>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}

Probab=98.49  E-value=3.9e-08  Score=87.73  Aligned_cols=69  Identities=17%  Similarity=0.254  Sum_probs=61.3

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccce-------------------------------------
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKL-------------------------------------  243 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~-------------------------------------  243 (277)
                      ..|.+++.|++..       ++|++||.|++||+|+.|+...+                                     
T Consensus        23 ~~v~a~~~G~V~~-------v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~   95 (277)
T 2f1m_A           23 AEVRPQVSGIILK-------RNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYI   95 (277)
T ss_dssp             EEECCSSCEEEEE-------ECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTC
T ss_pred             EEEEccccEEEEE-------EEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            4799999999999       99999999999999999986321                                     


Q ss_pred             ----------------------------------eeEEecCCCeEEEEEecCCCCccCCC--CeEEEEc
Q 023761          244 ----------------------------------MNEIEADRSGTIVEIIAEDRKPVSVD--TPLFVIE  276 (277)
Q Consensus       244 ----------------------------------~~eI~Ap~sG~V~~IlVe~Gd~V~~G--qpL~~Ie  276 (277)
                                                        ...|+||++|+|..+.++.|+.|..|  ++|++|.
T Consensus        96 s~~~~~~a~~~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~v~~g~~~~l~~i~  164 (277)
T 2f1m_A           96 SKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQ  164 (277)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCEECTTCSSCSEEEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCEEcCCCCceeEEEe
Confidence                                              24799999999999999999999999  5899874

>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B

Probab=98.49  E-value=2e-07  Score=88.94  Aligned_cols=70  Identities=21%  Similarity=0.244  Sum_probs=62.4

Q ss_pred             CCCccCCccEEEEecCCCCCCCcc-cCCCEEecCCeEEEEEcc-------------------------------------
Q 023761          200 LPPLKCPMAGTFYRSPAPGEPPFV-KVGDRVQKGQVLCIIEAM-------------------------------------  241 (277)
Q Consensus       200 ~~~I~APm~G~~~~sp~p~~~~~V-kvGd~V~kGqvL~~IEam-------------------------------------  241 (277)
                      ...|.++..|++.+       ++| ++||.|++||+|+.|+..                                     
T Consensus       121 ~~~v~a~~~G~V~~-------v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~  193 (413)
T 3ne5_B          121 YAIVQARAAGFIDK-------VYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEA  193 (413)
T ss_dssp             EEEECCSSCEEEEE-------ECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHH
T ss_pred             eEEEecccCEEEEE-------EEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHH
Confidence            35799999999999       998 999999999999999842                                     


Q ss_pred             -----------ceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          242 -----------KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       242 -----------K~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                                 .....|+||++|+|.++.++.|+.|..|++|++|.
T Consensus       194 ~~~~l~~~~~~~~~~~I~AP~~G~V~~~~v~~G~~V~~G~~l~~I~  239 (413)
T 3ne5_B          194 DIRRLIATQKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQ  239 (413)
T ss_dssp             HHHHHHHHTSCCCEEEEECSSSEEEEECCCCTTCEECTTSCSEEEE
T ss_pred             HHHHHHHhccccccEEEEcCCCeEEEEEEcCCCCEECCCCcEEEEe
Confidence                       12457999999999999999999999999999874

>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}

Probab=98.48  E-value=1.4e-07  Score=86.29  Aligned_cols=71  Identities=20%  Similarity=0.330  Sum_probs=62.1

Q ss_pred             CCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccce-----------------------------------
Q 023761          199 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKL-----------------------------------  243 (277)
Q Consensus       199 ~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~-----------------------------------  243 (277)
                      ....|.++..|++..       ++|++||.|++||+|+.|+...+                                   
T Consensus        30 ~~~~v~~~~~G~V~~-------v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~  102 (341)
T 3fpp_A           30 RKVDVGAQVSGQLKT-------LSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQ  102 (341)
T ss_dssp             SEEECCCSSCEEEEE-------ECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             EEEEEeccCCcEEEE-------EEeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345799999999999       99999999999999999986421                                   


Q ss_pred             --------------------------------------------------eeEEecCCCeEEEEEecCCCCccCCCCe--
Q 023761          244 --------------------------------------------------MNEIEADRSGTIVEIIAEDRKPVSVDTP--  271 (277)
Q Consensus       244 --------------------------------------------------~~eI~Ap~sG~V~~IlVe~Gd~V~~Gqp--  271 (277)
                                                                        ...|+||++|+|.++.++.|+.|..|++  
T Consensus       103 ~~L~~~~~~s~~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~  182 (341)
T 3fpp_A          103 QRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAP  182 (341)
T ss_dssp             HHHHHTSSSTTHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCEECCTTSCC
T ss_pred             HHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCEEecCCCCc
Confidence                                                              1459999999999999999999999997  


Q ss_pred             -EEEEc
Q 023761          272 -LFVIE  276 (277)
Q Consensus       272 -L~~Ie  276 (277)
                       |+.|.
T Consensus       183 ~l~~i~  188 (341)
T 3fpp_A          183 NILTLA  188 (341)
T ss_dssp             CCEEEE
T ss_pred             eEEEEe
Confidence             88763

>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A

Probab=98.35  E-value=2.1e-07  Score=87.00  Aligned_cols=71  Identities=17%  Similarity=0.279  Sum_probs=62.3

Q ss_pred             CCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccce-----------------------------------
Q 023761          199 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKL-----------------------------------  243 (277)
Q Consensus       199 ~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~-----------------------------------  243 (277)
                      ....|.+++.|++..       ++|++||.|++||+|+.|+...+                                   
T Consensus        42 ~~~~v~a~v~G~V~~-------v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~  114 (369)
T 1vf7_A           42 RIAEVRPQVNGIILK-------RLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQY  114 (369)
T ss_dssp             CEEEECCSSCEEEEE-------CCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHH
T ss_pred             eEEEEEeeCceEEEE-------EEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHH
Confidence            345799999999999       99999999999999999976321                                   


Q ss_pred             ----------------------eeEEecCCCeEEEEEecCCCCccCCC--CeEEEEc
Q 023761          244 ----------------------MNEIEADRSGTIVEIIAEDRKPVSVD--TPLFVIE  276 (277)
Q Consensus       244 ----------------------~~eI~Ap~sG~V~~IlVe~Gd~V~~G--qpL~~Ie  276 (277)
                                            ...|+||++|+|.++.++.|+.|..|  ++|++|.
T Consensus       115 ~~a~~~~~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~v~~G~~V~~g~g~~l~~i~  171 (369)
T 1vf7_A          115 ADANAAYLQSKAAVEQARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMATVQ  171 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSCSEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEEEEcCCCCeEcCCCCceeEEEe
Confidence                                  24799999999999999999999995  8999874

>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A

Probab=98.15  E-value=1.9e-06  Score=71.03  Aligned_cols=53  Identities=23%  Similarity=0.303  Sum_probs=44.7

Q ss_pred             cCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCC---ccC---CCC-eEEEEc
Q 023761          224 KVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK---PVS---VDT-PLFVIE  276 (277)
Q Consensus       224 kvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd---~V~---~Gq-pL~~Ie  276 (277)
                      ++|+.|++||.+|.||++|+..+|.||++|+|++++.+-.+   .|.   ||+ -|++|+
T Consensus        41 ~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~~P~liN~dpy~~gWl~ki~  100 (125)
T 3klr_A           41 EVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAENPGLVNKSCYEDGWLIKMT  100 (125)
T ss_dssp             CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTTCTTHHHHCTTTTTCCEEEE
T ss_pred             CCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhhChHhhcCCCCCCceEEEEE
Confidence            89999999999999999999999999999999999765444   333   664 577765

>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A

Probab=98.09  E-value=1.9e-07  Score=86.28  Aligned_cols=70  Identities=19%  Similarity=0.406  Sum_probs=60.9

Q ss_pred             CCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccce-----------------------------------
Q 023761          199 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKL-----------------------------------  243 (277)
Q Consensus       199 ~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~-----------------------------------  243 (277)
                      ....|.++..|++..       ++|++||.|++||+|+.|+...+                                   
T Consensus        31 ~~~~v~~~~~G~V~~-------v~v~~G~~V~~Gq~L~~ld~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~  103 (369)
T 4dk0_A           31 NTVDVGAQVSGKITK-------LYVKLGQQVKKGDLLAEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRL  103 (369)
T ss_dssp             SCCCBCCCSCSBCCE-------ECCCTTSCCCSSCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred             eeEEEecCCCcEEEE-------EEECCCCEECCCCEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456899999999999       99999999999999999986421                                   


Q ss_pred             --------------------------------------------------eeEEecCCCeEEEEEecCCCCccCCCCe--
Q 023761          244 --------------------------------------------------MNEIEADRSGTIVEIIAEDRKPVSVDTP--  271 (277)
Q Consensus       244 --------------------------------------------------~~eI~Ap~sG~V~~IlVe~Gd~V~~Gqp--  271 (277)
                                                                        ...|+||++|+|.++.++.|+.|..|++  
T Consensus       104 ~~L~~~~~~s~~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~  183 (369)
T 4dk0_A          104 SKLYGQKATSLDTLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKITSPIDGTVISTPVSEGQTVNSNQTTP  183 (369)
T ss_dssp             HHGGGSSCSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCSCCSCCCBCCCCTTCBCCTTTSCC
T ss_pred             HHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEEeeCCCCCCccCCCCcc
Confidence                                                              1359999999999999999999999998  


Q ss_pred             -EEEE
Q 023761          272 -LFVI  275 (277)
Q Consensus       272 -L~~I  275 (277)
                       |+.|
T Consensus       184 ~l~~i  188 (369)
T 4dk0_A          184 TIIKV  188 (369)
T ss_dssp             CCBBC
T ss_pred             eEEEE
Confidence             6654

>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}

Probab=98.01  E-value=7.4e-06  Score=68.92  Aligned_cols=54  Identities=22%  Similarity=0.338  Sum_probs=45.4

Q ss_pred             cCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCcc------CCCC-eEEEEcC
Q 023761          224 KVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPV------SVDT-PLFVIEP  277 (277)
Q Consensus       224 kvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V------~~Gq-pL~~Iep  277 (277)
                      ++|+.|++||.+|.||++|...+|.||++|+|++++-+-.+.-      -||+ -|++|++
T Consensus        63 ~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~L~d~PeliN~dPy~~GWl~ki~~  123 (143)
T 3mxu_A           63 QNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAALAESPELVNQKAETEGWLWKMTV  123 (143)
T ss_dssp             CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHSTTTTTCCEEEEC
T ss_pred             CCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhhChHhhhCCCCCCCeEEEEEE
Confidence            8999999999999999999999999999999999987655532      3553 6777653

>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}

Probab=97.98  E-value=2.5e-05  Score=72.87  Aligned_cols=68  Identities=21%  Similarity=0.172  Sum_probs=58.4

Q ss_pred             CCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcc----ceeeEEecCCCeEEEEEecCCCCccCCCCeEEE
Q 023761          199 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM----KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFV  274 (277)
Q Consensus       199 ~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEam----K~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~  274 (277)
                      ....|+||..|.|+.        +++.||.|++||+|+.|...    ....+|+||.+|+|....  ..-.|..|+.|+.
T Consensus       256 ~~~~v~A~~~Gl~~~--------~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~--~~~~V~~G~~l~~  325 (331)
T 3na6_A          256 GDCYLFSEHDGLFEI--------MIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRH--FPGMIKSGDCAAV  325 (331)
T ss_dssp             SCCCEECSSCEEEEE--------SSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEE--CSSEECTTCEEEE
T ss_pred             CcEEEeCCCCeEEEE--------cCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEe--CCCccCCCCEEEE
Confidence            355899999998775        79999999999999999984    567899999999998765  4577889999998


Q ss_pred             Ec
Q 023761          275 IE  276 (277)
Q Consensus       275 Ie  276 (277)
                      |-
T Consensus       326 Ia  327 (331)
T 3na6_A          326 IG  327 (331)
T ss_dssp             EE
T ss_pred             Ee
Confidence            73

>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}

Probab=97.88  E-value=9.1e-06  Score=67.90  Aligned_cols=53  Identities=26%  Similarity=0.433  Sum_probs=43.3

Q ss_pred             cCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecC---CCCcc---CCCC-eEEEEc
Q 023761          224 KVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAE---DRKPV---SVDT-PLFVIE  276 (277)
Q Consensus       224 kvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe---~Gd~V---~~Gq-pL~~Ie  276 (277)
                      ++|++|++||.+|.||++|...+|.||++|+|++++-+   +=+.|   -||+ -|++|+
T Consensus        58 ~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN~~l~~~P~liN~dPy~~GWl~ki~  117 (137)
T 3tzu_A           58 EVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVNTAAVDDPATIATDPYGAGWLYSVQ  117 (137)
T ss_dssp             CTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEECHHHHHCTHHHHHCTTTTTCCEEEE
T ss_pred             CCCCEEeCCCEEEEEEecceeeeeecCcceEEEEehhhhhcChhhhcCCCCcCCcEEEEE
Confidence            89999999999999999999999999999999999643   22333   3553 666665

>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}

Probab=97.78  E-value=7.3e-05  Score=70.16  Aligned_cols=68  Identities=19%  Similarity=0.153  Sum_probs=58.0

Q ss_pred             CCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcc----ceeeEEecCCCeEEEEEecCCCCccCCCCeEEE
Q 023761          199 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM----KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFV  274 (277)
Q Consensus       199 ~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEam----K~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~  274 (277)
                      ....++|+..|.|..        .++.||.|++||+|+.|..+    +...+|+||.+|+|..+.  ....|..|+.|+.
T Consensus       266 ~~~~v~A~~~G~~~~--------~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~~--~~~~V~~Gd~l~~  335 (354)
T 3cdx_A          266 ADAYVMAPRTGLFEP--------THYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFGA--GPGRVTRGDAVAV  335 (354)
T ss_dssp             GGGEEECSSCEEEEE--------SCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEEE--CSSEECTTCEEEE
T ss_pred             CcEEEECCCCEEEEE--------eCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEEe--CCCccCCCCEEEE
Confidence            345789999996654        78999999999999999984    778999999999998765  7788999999998


Q ss_pred             Ec
Q 023761          275 IE  276 (277)
Q Consensus       275 Ie  276 (277)
                      |.
T Consensus       336 ia  337 (354)
T 3cdx_A          336 VM  337 (354)
T ss_dssp             EE
T ss_pred             Ee
Confidence            73

>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*

Probab=97.70  E-value=7.4e-05  Score=70.89  Aligned_cols=67  Identities=16%  Similarity=0.188  Sum_probs=58.1

Q ss_pred             CCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEc------cceeeEEecCCCeEEEEEecCCCCccCCCCeE
Q 023761          199 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA------MKLMNEIEADRSGTIVEIIAEDRKPVSVDTPL  272 (277)
Q Consensus       199 ~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEa------mK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL  272 (277)
                      +...|+||..|.|+.        .++.||.|++||+|+.|-.      .....+|+||.+|+|....  ..-.|..|+.|
T Consensus       289 ~~~~v~A~~~Gl~~~--------~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~~--~~p~V~~G~~l  358 (368)
T 3fmc_A          289 NYRKFHAPKAGMVEY--------LGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILHF--ASASVHQGTEL  358 (368)
T ss_dssp             GEEEEECSSCEEEEE--------CSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEEC--SSSEECTTCEE
T ss_pred             CcEEEecCCCEEEEE--------eCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEEe--CCCccCCCCEE
Confidence            345799999999987        8999999999999999988      4577899999999997665  55789999999


Q ss_pred             EEE
Q 023761          273 FVI  275 (277)
Q Consensus       273 ~~I  275 (277)
                      +.|
T Consensus       359 ~~i  361 (368)
T 3fmc_A          359 YKV  361 (368)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            987

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.56  E-value=2.9e-05  Score=60.25  Aligned_cols=45  Identities=16%  Similarity=0.246  Sum_probs=42.1

Q ss_pred             CCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          232 GQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       232 GqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      |..+|.++.++....|.||.+|+|.++++++||.|..||+|++|+
T Consensus         5 ~g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~le   49 (100)
T 2dn8_A            5 SSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEME   49 (100)
T ss_dssp             CCCCCCCCCCCCTTEEECSSCEEEEEESSCTTEEECTTCEEEEEE
T ss_pred             CCEEEEEEcCCCCcEEeCCCCEEEEEEEcCCcCEECCCCEEEEEE
Confidence            566799999999999999999999999999999999999999986

>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A

Probab=97.54  E-value=7.5e-05  Score=63.58  Aligned_cols=54  Identities=22%  Similarity=0.271  Sum_probs=43.3

Q ss_pred             cCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCC---cc---CCC-CeEEEEcC
Q 023761          224 KVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK---PV---SVD-TPLFVIEP  277 (277)
Q Consensus       224 kvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd---~V---~~G-qpL~~Iep  277 (277)
                      ++|+.|++|+.+|.||++|...+|.||++|+|++++-+--+   .|   -|| .-|++|++
T Consensus        68 ~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN~~L~d~PeliN~dPyg~GWl~kik~  128 (155)
T 3hgb_A           68 VIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQV  128 (155)
T ss_dssp             CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEC
T ss_pred             CCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhhChHhhccCCCCCcEEEEEEE
Confidence            89999999999999999999999999999999999853322   12   244 36666653

>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A

Probab=97.49  E-value=0.00012  Score=62.53  Aligned_cols=64  Identities=17%  Similarity=0.333  Sum_probs=55.2

Q ss_pred             CccCCccEEEEecCCCCCCCcccCCCEEec----CCeEEEEEccceeeEEecCCCeEEEEE-------------------
Q 023761          202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQK----GQVLCIIEAMKLMNEIEADRSGTIVEI-------------------  258 (277)
Q Consensus       202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~k----GqvL~~IEamK~~~eI~Ap~sG~V~~I-------------------  258 (277)
                      .|.||+.|++..        .-++.|.|-.    |+-+++...   ...++||++|+|..+                   
T Consensus        14 ~i~aP~~G~vv~--------l~~v~D~vfs~~~~G~Giai~p~---~~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLi   82 (162)
T 1ax3_A           14 VFVSPITGEIHP--------ITDVPDQVFSGKMMGDGFAILPS---EGIVVSPVRGKILNVFPTKHAIGLQSDGGREILI   82 (162)
T ss_dssp             SCCCCCSEEEEE--------GGGSSSHHHHTCTTSEEEEEEEC---SSEEEESCCEEEEECCSSSSEEEEESSSSCEEEE
T ss_pred             EEEecCceEEEE--------eEECCCccccccceeceEEEEeC---CCcEECCCCeEEEEEccCCeEEEEEcCCCCEEEE
Confidence            599999999998        4778887766    888887776   457899999999988                   


Q ss_pred             ----------------ecCCCCccCCCCeEEEEc
Q 023761          259 ----------------IAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       259 ----------------lVe~Gd~V~~GqpL~~Ie  276 (277)
                                      +|+.||.|..||+|+++.
T Consensus        83 HIGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d  116 (162)
T 1ax3_A           83 HFGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVD  116 (162)
T ss_dssp             ECSSSTTTTTTTTEEESCCCCSEECSEEEEEEEC
T ss_pred             EECccchhcCCCccEEEEeCCCEEcCCCEEEEEC
Confidence                            899999999999999874

>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A

Probab=97.45  E-value=0.00016  Score=61.83  Aligned_cols=65  Identities=28%  Similarity=0.369  Sum_probs=55.6

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCCEEec----CCeEEEEEccceeeEEecCCCeEEEEE------------------
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQK----GQVLCIIEAMKLMNEIEADRSGTIVEI------------------  258 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~k----GqvL~~IEamK~~~eI~Ap~sG~V~~I------------------  258 (277)
                      ..|.||+.|++..        .-++.|.|-.    |+-+++....   ..++||++|+|..+                  
T Consensus        13 ~~i~aP~~G~vv~--------l~~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evL   81 (161)
T 1f3z_A           13 IEIIAPLSGEIVN--------IEDVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELF   81 (161)
T ss_dssp             EEEECSSCEEEEE--------GGGSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             cEEEecCCeEEEE--------eEECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCCEEE
Confidence            3599999999998        4477887766    8888887765   58899999999998                  


Q ss_pred             -----------------ecCCCCccCCCCeEEEEc
Q 023761          259 -----------------IAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       259 -----------------lVe~Gd~V~~GqpL~~Ie  276 (277)
                                       +|+.||.|..||+|+++.
T Consensus        82 iHiGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d  116 (161)
T 1f3z_A           82 VHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFD  116 (161)
T ss_dssp             EECSBSGGGGTTTTEEECSCTTCEECTTCEEEEEC
T ss_pred             EEECccchhcCCCccEEEEeCcCEECCCCEEEEEC
Confidence                             899999999999999874

>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1

Probab=97.42  E-value=0.00018  Score=60.91  Aligned_cols=64  Identities=25%  Similarity=0.366  Sum_probs=55.2

Q ss_pred             CccCCccEEEEecCCCCCCCcccCCCEEec----CCeEEEEEccceeeEEecCCCeEEEE--------------------
Q 023761          202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQK----GQVLCIIEAMKLMNEIEADRSGTIVE--------------------  257 (277)
Q Consensus       202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~k----GqvL~~IEamK~~~eI~Ap~sG~V~~--------------------  257 (277)
                      .|.||+.|++..        .-+++|.|-.    |+-+++....   ..++||++|+|..                    
T Consensus         9 ~i~aP~~G~vv~--------l~~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLi   77 (154)
T 2gpr_A            9 KVLAPCDGTIIT--------LDEVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILL   77 (154)
T ss_dssp             EEECSSSEEEEC--------GGGSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEEEE
T ss_pred             EEEecCCeEEEE--------eeECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEE
Confidence            589999999998        4578888766    8888887765   6899999999998                    


Q ss_pred             ---------------EecCCCCccCCCCeEEEEc
Q 023761          258 ---------------IIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       258 ---------------IlVe~Gd~V~~GqpL~~Ie  276 (277)
                                     ++|+.||.|..||+|+++.
T Consensus        78 HiGidTv~l~G~gF~~~V~~Gd~V~~G~~L~~~d  111 (154)
T 2gpr_A           78 HIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVD  111 (154)
T ss_dssp             ECSSSGGGGTTCSEEECCCTTCEECTTCEEEEEC
T ss_pred             EECcchhhcCCCceEEEEcCCCEEcCCCEEEEEC
Confidence                           4899999999999999874

>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}

Probab=97.05  E-value=0.0017  Score=60.01  Aligned_cols=65  Identities=23%  Similarity=0.317  Sum_probs=54.7

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEc----cceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA----MKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI  275 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEa----mK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~I  275 (277)
                      ..++|+..|.+..        +++.|+.|++||+|+.|-.    ++...+|+||.+|+|.-+.  ..-.|..|+.|+.|
T Consensus       258 ~~~~a~~~G~~~~--------~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~~--~~p~V~~Gd~l~~i  326 (332)
T 2qj8_A          258 DQLKSPSPGIFEP--------RCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAIR--SAMYVQGNEEVAIL  326 (332)
T ss_dssp             GEEECSSSEEEEE--------CSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEEE--CSEEECTTCEEEEE
T ss_pred             eEEeCCCCeEEEE--------eCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEEe--CCCeeCCCCEEEEE
Confidence            4678999998765        6899999999999999965    5677899999999997665  56678888888876

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*

Probab=96.89  E-value=0.00085  Score=47.95  Aligned_cols=31  Identities=6%  Similarity=0.245  Sum_probs=29.2

Q ss_pred             EEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          246 EIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       246 eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      .|.|+.+|+|.+++++.||.|..|++|++|+
T Consensus         1 ~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~   31 (72)
T 1z6h_A            1 TVSIQMAGNLWKVHVKAGDQIEKGQEVAILE   31 (72)
T ss_dssp             CEECCSSEEEEEECCCTTCEECTTCEEEEEE
T ss_pred             CEECcccEEEEEEEcCCcCEECCCCEEEEEE
Confidence            3789999999999999999999999999986

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A

Probab=96.80  E-value=0.0013  Score=47.00  Aligned_cols=32  Identities=25%  Similarity=0.424  Sum_probs=30.1

Q ss_pred             eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          245 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       245 ~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ..|.|+.+|+|.+++++.||.|..||+|++|+
T Consensus         6 ~~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~   37 (74)
T 2d5d_A            6 NVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLE   37 (74)
T ss_dssp             CEEECSSCEEEEEECCCTTCEECTTCEEEEEE
T ss_pred             eEEecCCCEEEEEEEcCCCCEeCCCCEEEEEe
Confidence            46899999999999999999999999999986

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A

Probab=96.64  E-value=0.0017  Score=47.03  Aligned_cols=33  Identities=27%  Similarity=0.469  Sum_probs=30.7

Q ss_pred             eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          244 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       244 ~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ...|.|+.+|+|.++++++|+.|..||+|++|+
T Consensus         8 ~~~v~a~~~G~v~~~~v~~G~~V~~G~~L~~l~   40 (77)
T 1dcz_A            8 EGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLE   40 (77)
T ss_dssp             SSEEEBSSSCEEEEECCCTTCEECTTSEEEEEE
T ss_pred             CeEEECCCCEEEEEEEcCCcCEEcCCCEEEEEE
Confidence            456899999999999999999999999999986

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}

Probab=96.51  E-value=0.0013  Score=49.23  Aligned_cols=32  Identities=16%  Similarity=0.270  Sum_probs=30.3

Q ss_pred             eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          245 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       245 ~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ..|.||.+|+|.+++++.|+.|..||+|+.|+
T Consensus         6 ~~v~a~~~G~v~~~~v~~Gd~V~~G~~l~~ie   37 (84)
T 2kcc_A            6 TVLRSPSAGKLTQYTVEDGGHVEAGSSYAEME   37 (84)
T ss_dssp             TEECCSSSCCEEEESSCTTEEECTTCEEEEEE
T ss_pred             ceEECCCCEEEEEEECCCCCEECCCCEEEEEE
Confidence            46999999999999999999999999999986

>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}

Probab=96.48  E-value=0.0026  Score=55.87  Aligned_cols=52  Identities=31%  Similarity=0.381  Sum_probs=41.9

Q ss_pred             CCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEe-----------------------------cCCCCcc
Q 023761          216 APGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEII-----------------------------AEDRKPV  266 (277)
Q Consensus       216 ~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~Il-----------------------------Ve~Gd~V  266 (277)
                      +-++..+|+.|+.|++||+||..+      +|.++++|+|.+..                             +++|+.|
T Consensus        18 pyGA~L~V~dG~~VkkG~~laeWD------PIitE~~G~V~d~k~lP~I~I~d~~G~~~~~Y~LPvgA~l~~~V~dG~~V   91 (193)
T 2xha_A           18 SPKAKLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDVKNVRKIVVETIDRKYTKTYYIPESAGIEPGLRVGTKV   91 (193)
T ss_dssp             CTTCEESCCTTCEECTTCEEEEEC------CEECSSCEEEEEEEEEEEEEEECTTSSCEEEEEEEGGGCCCTTCCTTCEE
T ss_pred             CCCCEEEECCCCEEcCCCEEEEeC------cEEEccCEEEEeeccCcEEEEEcCCCCEeEEEEcCCCCEEEEEcCCCCEE
Confidence            345667899999999999999877      89999999987543                             6777777


Q ss_pred             CCCCeEE
Q 023761          267 SVDTPLF  273 (277)
Q Consensus       267 ~~GqpL~  273 (277)
                      ..|++|+
T Consensus        92 ~~GdvLA   98 (193)
T 2xha_A           92 KQGLPLS   98 (193)
T ss_dssp             CTTSBSS
T ss_pred             cCCCEEe
Confidence            7777663

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}

Probab=96.06  E-value=0.0038  Score=47.74  Aligned_cols=33  Identities=18%  Similarity=0.304  Sum_probs=30.6

Q ss_pred             eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          244 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       244 ~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ...|.|+.+|+|.++++++||.|..||+|++|+
T Consensus        25 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie   57 (94)
T 2jku_A           25 SSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIE   57 (94)
T ss_dssp             CCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEE
T ss_pred             ceEEECCCCEEEEEEECCCCCEEcCCCEEEEEe
Confidence            456889999999999999999999999999986

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}

Probab=96.04  E-value=0.0063  Score=44.22  Aligned_cols=33  Identities=21%  Similarity=0.391  Sum_probs=30.5

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEc
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA  240 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEa  240 (277)
                      ..|+||..|++.+       .++++||.|..|+.|+.|++
T Consensus        45 ~~i~Ap~~G~v~~-------~~v~~G~~v~~g~~l~~i~~   77 (77)
T 2l5t_A           45 VKIPSPVRGKIVK-------ILYREGQVVPVGSTLLQIDT   77 (77)
T ss_dssp             EECCCCCCEEEEE-------ECCCTTCEECSCSEEEEEEC
T ss_pred             EEEECCCCEEEEE-------EEeCCcCEECCCCEEEEEEC
Confidence            4799999999999       89999999999999999873

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}

Probab=96.01  E-value=0.0042  Score=47.85  Aligned_cols=33  Identities=21%  Similarity=0.244  Sum_probs=30.7

Q ss_pred             eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          244 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       244 ~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ...|.++.+|+|.++++++|+.|..||+|++|+
T Consensus        14 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie   46 (99)
T 2ejm_A           14 QGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMI   46 (99)
T ss_dssp             CSSCBCSSSEEEEEECCCTTEEECSSCEEEEEE
T ss_pred             ceEEecCCCEEEEEEECCCCCEECCCCEEEEEE
Confidence            456899999999999999999999999999986

>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A

Probab=95.97  E-value=0.0054  Score=44.91  Aligned_cols=32  Identities=25%  Similarity=0.366  Sum_probs=29.8

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEE
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIE  239 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IE  239 (277)
                      ..|+||+.|++..       .++++|+.|..|+.|+.|+
T Consensus        49 ~~i~Ap~~G~v~~-------~~v~~G~~V~~G~~L~~i~   80 (80)
T 1bdo_A           49 NQIEADKSGTVKA-------ILVESGQPVEFDEPLVVIE   80 (80)
T ss_dssp             EEEECSSCEEEEE-------ECSCTTCEECTTCEEEEEC
T ss_pred             EEEECCCCEEEEE-------EEcCCCCEECCCCEEEEEC
Confidence            4799999999999       8999999999999999885

>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}

Probab=95.89  E-value=0.0075  Score=54.79  Aligned_cols=54  Identities=26%  Similarity=0.263  Sum_probs=40.3

Q ss_pred             ccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761          223 VKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP  277 (277)
Q Consensus       223 VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep  277 (277)
                      |+.|+.-..=..-+.|+.. -...|.++.+|+|.++++++||.|..||+|++|.+
T Consensus        11 v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~kG~~L~~ld~   64 (341)
T 3fpp_A           11 VRPGDLQQSVLATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP   64 (341)
T ss_dssp             --CCCCCCEEEEEEEEEES-SEEECCCSSCEEEEEECCCTTCEECTTCEEEEECC
T ss_pred             EEEeceeEEEEEEEEEEee-EEEEEeccCCcEEEEEEeCCCCEECCCCEEEEECh
Confidence            3444433333445666665 45689999999999999999999999999999864

>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}

Probab=95.86  E-value=0.0053  Score=56.21  Aligned_cols=55  Identities=18%  Similarity=0.172  Sum_probs=44.0

Q ss_pred             ccCCCEEecCCeEEEEEcc-ceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761          223 VKVGDRVQKGQVLCIIEAM-KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP  277 (277)
Q Consensus       223 VkvGd~V~kGqvL~~IEam-K~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep  277 (277)
                      |+.|+....-..-+.|+.. .-...|.++++|+|.++++++||.|..||+|++|.+
T Consensus        35 v~~~~~~~~~~~~G~v~~~p~~~~~v~~~~~G~V~~v~v~~G~~V~kGq~L~~ld~   90 (359)
T 3lnn_A           35 ATRETVAAPFNLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDS   90 (359)
T ss_dssp             CEEEEECCEEEEEEEEECCSSSEEEECCSSCEEEEECCSCTTCEECTTCEEEEEEC
T ss_pred             eeecccceeEEEEEEEEECCCcEEEEeccCCEEEEEEEcCCCCEEcCCCEEEEECh
Confidence            3444443444566788875 567889999999999999999999999999999863

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=95.84  E-value=0.0061  Score=44.51  Aligned_cols=34  Identities=32%  Similarity=0.525  Sum_probs=31.5

Q ss_pred             CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEc
Q 023761          200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA  240 (277)
Q Consensus       200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEa  240 (277)
                      ...|+||+.|++.+       .++++||.|..|++|+.|+.
T Consensus        43 ~~~i~Ap~~G~v~~-------~~v~~G~~V~~G~~l~~i~~   76 (80)
T 1qjo_A           43 SMEVPAPFAGVVKE-------LKVNVGDKVKTGSLIMIFEV   76 (80)
T ss_dssp             CEEEEBSSCEEEEE-------CCCCTTCEECTTCCCEEEES
T ss_pred             eEEEeCCCCEEEEE-------EecCCCCEECCCCEEEEEEc
Confidence            45899999999999       89999999999999999985

>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}

Probab=95.83  E-value=0.0077  Score=57.08  Aligned_cols=51  Identities=31%  Similarity=0.382  Sum_probs=41.8

Q ss_pred             CCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEe-----------------------------cCCCCccC
Q 023761          217 PGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEII-----------------------------AEDRKPVS  267 (277)
Q Consensus       217 p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~Il-----------------------------Ve~Gd~V~  267 (277)
                      -++..+|+.|+.|++||+||.-+      +|.++++|+|.+..                             +++|+.|.
T Consensus        59 yga~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~~~~~~~~p~i~i~d~~g~~~y~lp~ga~l~~~v~~g~~v~  132 (352)
T 2xhc_A           59 PKAKLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDVKNVRKIVVETIDRKYTKTYYIPESAGIEPGLRVGTKVK  132 (352)
T ss_dssp             TTCEESCCTTCEECTTCEEEEEC------CEECSSCEEEEEEEEEEEEEEECTTCSSEEEEEEEGGGCBCTTCCTTCEEC
T ss_pred             CCCEEEecCCCEEcCCCEEEEec------cEEEecceEEEeeccCCceEEEEEcCCCCEEEEcCCCcEEEEecCCCCEEc
Confidence            34557899999999999999987      88899999886543                             77888888


Q ss_pred             CCCeEE
Q 023761          268 VDTPLF  273 (277)
Q Consensus       268 ~GqpL~  273 (277)
                      .|++|+
T Consensus       133 ~G~vla  138 (352)
T 2xhc_A          133 QGLPLS  138 (352)
T ss_dssp             TTCBSB
T ss_pred             cCcEEe
Confidence            888774

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A

Probab=95.47  E-value=0.012  Score=42.96  Aligned_cols=34  Identities=26%  Similarity=0.455  Sum_probs=31.1

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcc
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM  241 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEam  241 (277)
                      ..|+||..|++..       .++++|+.|..|+.|+.|+..
T Consensus        42 ~~i~Ap~~G~v~~-------~~v~~G~~V~~g~~l~~i~~~   75 (79)
T 1iyu_A           42 MEVPSPKAGVVKS-------VSVKLGDKLKEGDAIIELEPA   75 (79)
T ss_dssp             EEEECSSSSEEEE-------ESCCTTCEEETTSEEEEEECC
T ss_pred             EEEECCCCEEEEE-------EEeCCCCEECCCCEEEEEecC
Confidence            4799999999999       899999999999999998753

>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1

Probab=95.45  E-value=0.019  Score=50.03  Aligned_cols=65  Identities=25%  Similarity=0.313  Sum_probs=50.4

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCCEEe----cCCeEEEEEccceeeEEecCCCeEEE--------------------
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQ----KGQVLCIIEAMKLMNEIEADRSGTIV--------------------  256 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~----kGqvL~~IEamK~~~eI~Ap~sG~V~--------------------  256 (277)
                      ..|.||+.|++..        +-++-|.|=    -|+-++++=..   ..|.||++|+|.                    
T Consensus        35 ~~i~aPv~G~vi~--------L~eV~D~vFs~~~mGdG~AI~P~~---g~v~AP~dG~V~~vfpT~HAigi~s~~G~EvL  103 (183)
T 3our_B           35 IEIIAPLSGEIVN--------IEDVPDVVFAEKIVGDGIAIKPTG---NKMVAPVNGTIGKIFETNHAFSIESDDGVELF  103 (183)
T ss_dssp             EEEECSSCEEEEE--------GGGSSCHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             eEEEeecceEEEE--------chhCcChHhcccCccCeEEEEcCC---CEEEeCCCeEEEEECCCCCEEEEEeCCCCEEE
Confidence            4699999999987        455566552    27777776543   378899999887                    


Q ss_pred             ---------------EEecCCCCccCCCCeEEEEc
Q 023761          257 ---------------EIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       257 ---------------~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                                     +.+|++||.|..||+|+++.
T Consensus       104 IHIGiDTV~L~G~gF~~~V~~Gd~Vk~Gd~L~~fD  138 (183)
T 3our_B          104 VHFGIDTVELKGEGFTRIAEEGQTVKAGDTVIEFD  138 (183)
T ss_dssp             EECSBSGGGGTTTTEEECSCTTCEECTTCEEEEEC
T ss_pred             EEecccccccCCccceEEEeCcCEEcCCCEEEEEC
Confidence                           67888999999999999873

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A

Probab=95.31  E-value=0.013  Score=42.72  Aligned_cols=33  Identities=18%  Similarity=0.224  Sum_probs=30.7

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEc
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA  240 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEa  240 (277)
                      ..|+||..|++..       +++++||.|..|+.|+.|+.
T Consensus        45 ~~i~Ap~~G~v~~-------~~v~~G~~v~~g~~l~~i~~   77 (79)
T 1ghj_A           45 MEVLAEADGVIAE-------IVKNEGDTVLSGELLGKLTE   77 (79)
T ss_dssp             EEEECSSCEEEEE-------ESSCTTCEECTTCEEEEECC
T ss_pred             EEEEcCCCEEEEE-------EEcCCcCEECCCCEEEEEec
Confidence            4799999999999       89999999999999999874

>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A

Probab=95.23  E-value=0.011  Score=54.96  Aligned_cols=43  Identities=19%  Similarity=0.353  Sum_probs=36.2

Q ss_pred             eEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761          234 VLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP  277 (277)
Q Consensus       234 vL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep  277 (277)
                      ..+.|+.. -...|.++++|+|.++++++||.|..||+|++|.+
T Consensus        34 ~~G~v~~~-~~~~v~a~v~G~V~~v~v~~Gd~V~kGq~L~~ld~   76 (369)
T 1vf7_A           34 LPGRTNAF-RIAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDP   76 (369)
T ss_dssp             EEEECEES-CEEEECCSSCEEEEECCSCSSEEECTTSEEEEECC
T ss_pred             EEEEEEee-eEEEEEeeCceEEEEEEcCCCCEEcCCCEEEEECc
Confidence            44566654 35679999999999999999999999999999864

>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1

Probab=95.16  E-value=0.013  Score=49.54  Aligned_cols=73  Identities=12%  Similarity=0.179  Sum_probs=46.7

Q ss_pred             CCccCCccEEEEecCC----------CCC------------------CCcccCCCEEecCCeEEEEEccce---------
Q 023761          201 PPLKCPMAGTFYRSPA----------PGE------------------PPFVKVGDRVQKGQVLCIIEAMKL---------  243 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~----------p~~------------------~~~VkvGd~V~kGqvL~~IEamK~---------  243 (277)
                      ..|+||..|++..--+          -+.                  ..+|++||+|++||.|+.++-..+         
T Consensus        45 ~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGidTv~l~G~gF~~~V~~Gd~V~~G~~L~~~d~~~i~~~g~~~~t  124 (154)
T 2gpr_A           45 NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKS  124 (154)
T ss_dssp             SEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSSGGGGTTCSEEECCCTTCEECTTCEEEEECHHHHHHHSSCCCE
T ss_pred             CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcchhhcCCCceEEEEcCCCEEcCCCEEEEECHHHHHhcCCCCeE
Confidence            4799999999986321          111                  158999999999999999874321         


Q ss_pred             eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          244 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       244 ~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ..-|.- .+  +..+....+..|..|+.|+.++
T Consensus       125 ~vvvtn-~~--~~~~~~~~~~~v~~g~~~~~~~  154 (154)
T 2gpr_A          125 PIIFTN-NG--GKTLEIVKMGEVKQGDVVAILK  154 (154)
T ss_dssp             EEEEEE-CS--SCCCSCBCCEEECTTCEEEEEC
T ss_pred             EEEEEC-CC--cceEEEccCceEcCCCEEEEeC
Confidence            122222 11  1123333456688899998874

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A

Probab=94.86  E-value=0.026  Score=43.05  Aligned_cols=33  Identities=18%  Similarity=0.266  Sum_probs=30.8

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEc
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA  240 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEa  240 (277)
                      ..|+||..|++.+       ++++.|+.|..|+.|+.|+.
T Consensus        48 ~~i~Ap~~G~V~~-------i~v~~G~~V~~G~~l~~i~~   80 (93)
T 1k8m_A           48 VTITSRYDGVIKK-------LYYNLDDIAYVGKPLVDIET   80 (93)
T ss_dssp             EECCCSSCEEEEE-------ECCCSSCEECTTSEEEEEEC
T ss_pred             EEEEcCCCEEEEE-------EEcCCCCEeCCCCEEEEEec
Confidence            4799999999999       89999999999999999975

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1

Probab=94.85  E-value=0.021  Score=41.72  Aligned_cols=30  Identities=20%  Similarity=0.347  Sum_probs=27.4

Q ss_pred             EecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          247 IEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       247 I~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      +-++..|+|.+++++.||.|..||+|+.|+
T Consensus        10 ~g~~~~G~i~~~~v~~Gd~V~~G~~l~~ie   39 (81)
T 1gjx_A           10 IGGHENVDIIAVEVNVGDTIAVDDTLITLE   39 (81)
T ss_dssp             CSSCSSEEEEEECCCSSCBCCSSCCCEEEE
T ss_pred             CCCCCcEEEEEEEcCCCCEECCCCEEEEEE
Confidence            446789999999999999999999999986

>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A

Probab=94.68  E-value=0.013  Score=53.64  Aligned_cols=54  Identities=22%  Similarity=0.209  Sum_probs=42.7

Q ss_pred             ccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761          223 VKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP  277 (277)
Q Consensus       223 VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep  277 (277)
                      |+.|+.-..=..-+.|+.. -...|.++.+|+|.++++++||.|..||+|++|.+
T Consensus        12 v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~~Gq~L~~ld~   65 (369)
T 4dk0_A           12 VKRGNIEKNVVATGSIESI-NTVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDS   65 (369)
T ss_dssp             CCEECCCCCCEEEEEEECS-SCCCBCCCSCSBCCEECCCTTSCCCSSCCCEECCC
T ss_pred             EEecceeEEEEEeEEEEee-eeEEEecCCCcEEEEEEECCCCEECCCCEEEEEcC
Confidence            4455554455566777754 35578999999999999999999999999999863

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}

Probab=94.59  E-value=0.011  Score=44.08  Aligned_cols=35  Identities=31%  Similarity=0.491  Sum_probs=32.0

Q ss_pred             CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcc
Q 023761          200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM  241 (277)
Q Consensus       200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEam  241 (277)
                      ...|+||+.|++.+       +++++||.|..|+.|+.|+..
T Consensus        39 ~~~i~Ap~~G~V~~-------~~v~~G~~V~~G~~l~~i~~~   73 (85)
T 2k7v_A           39 SMEVPAPFAGVVKE-------LKVNVGDKVKTGSLIMIFEVE   73 (85)
T ss_dssp             EEEEECSSCBCCCE-------ECSCTTCCBCTTSEEEEEECC
T ss_pred             EEEEECCCCEEEEE-------EEeCCCCEECCCCEEEEEEcC
Confidence            45899999999999       899999999999999999864

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*

Probab=94.57  E-value=0.031  Score=41.77  Aligned_cols=33  Identities=27%  Similarity=0.386  Sum_probs=30.7

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCC-EEecCCeEEEEEc
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGD-RVQKGQVLCIIEA  240 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd-~V~kGqvL~~IEa  240 (277)
                      ..|+||..|++.+       ++++.|+ .|..||+|+.|+.
T Consensus        49 ~~i~Ap~~G~v~~-------~~v~~G~~~V~~G~~l~~i~~   82 (87)
T 3crk_C           49 IGFEVQEEGYLAK-------ILVPEGTRDVPLGTPLCIIVE   82 (87)
T ss_dssp             EEEECCSCEEEEE-------ESSCTTCCCEETTCEEEEEES
T ss_pred             ceeecCcCcEEEE-------EEECCCCeEECCCCEEEEEEc
Confidence            4799999999999       8999999 8999999999985

>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B

Probab=94.48  E-value=0.035  Score=52.58  Aligned_cols=54  Identities=17%  Similarity=0.122  Sum_probs=42.1

Q ss_pred             ccCCCEEecCCeEEEEEcc-ceeeEEecCCCeEEEEEec-CCCCccCCCCeEEEEc
Q 023761          223 VKVGDRVQKGQVLCIIEAM-KLMNEIEADRSGTIVEIIA-EDRKPVSVDTPLFVIE  276 (277)
Q Consensus       223 VkvGd~V~kGqvL~~IEam-K~~~eI~Ap~sG~V~~IlV-e~Gd~V~~GqpL~~Ie  276 (277)
                      |+.|+.-..=...+.|+.. .-...|.++++|+|.+++| ++||.|..||+|++|.
T Consensus        99 v~~~~~~~~v~~~G~V~~~~~~~~~v~a~~~G~V~~v~V~~~Gd~VkkGq~L~~ld  154 (413)
T 3ne5_B           99 VTRGPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLT  154 (413)
T ss_dssp             CEEECCEEEEEEEEEEEEEEEEEEEECCSSCEEEEEECSCCTTCEECTTCEEEEEE
T ss_pred             EEEeecceEEEEEEEEEECCCceEEEecccCEEEEEEEeCCCCCEEcCCCEEEEEc
Confidence            3444444444556677653 4567899999999999998 9999999999999986

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=94.33  E-value=0.014  Score=42.91  Aligned_cols=34  Identities=15%  Similarity=0.189  Sum_probs=30.9

Q ss_pred             CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEc
Q 023761          200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA  240 (277)
Q Consensus       200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEa  240 (277)
                      ...|+||..|++.+       +++++||.|..|+.|+.|+.
T Consensus        45 ~~~i~Ap~~G~v~~-------~~v~~G~~v~~G~~l~~i~~   78 (80)
T 1pmr_A           45 VLEVPASADGILDA-------VLEDEGTTVTSRQILGRLRE   78 (80)
T ss_dssp             CCCCBCCSBCCCCB-------CTTCTTCEECSSSEEEBCCC
T ss_pred             EEEEECCCCEEEEE-------EEcCCcCEECCCCEEEEEec
Confidence            35799999999999       89999999999999998864

>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}

Probab=94.25  E-value=0.018  Score=50.46  Aligned_cols=51  Identities=25%  Similarity=0.240  Sum_probs=41.7

Q ss_pred             CCCCCc--ccCCCEEecCCeEEEEEccceeeEEecCCCeEEEE--------------------------E--ecCCCCcc
Q 023761          217 PGEPPF--VKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVE--------------------------I--IAEDRKPV  266 (277)
Q Consensus       217 p~~~~~--VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~--------------------------I--lVe~Gd~V  266 (277)
                      .++-+.  |+.|+.|+.||+|+      -...|-|+++|+|.-                          +  +|.+||.|
T Consensus        77 vgA~l~~~V~dG~~V~~GdvLA------Kd~AIiaEIdG~V~fgkgkrrivI~~~~Ge~~eylIPk~k~i~~~V~eGd~V  150 (193)
T 2xha_A           77 ESAGIEPGLRVGTKVKQGLPLS------KNEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEV  150 (193)
T ss_dssp             GGGCCCTTCCTTCEECTTSBSS------TTSCSBCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEE
T ss_pred             CCCEEEEEcCCCCEEcCCCEEe------cCCeEEEccceEEEECCCeEEEEEECCCCCEEEEEeCCCCccccccCCCCEE
Confidence            345577  99999999999998      345577888887762                          3  89999999


Q ss_pred             CCCCeEE
Q 023761          267 SVDTPLF  273 (277)
Q Consensus       267 ~~GqpL~  273 (277)
                      ..|++|.
T Consensus       151 ~~Ge~L~  157 (193)
T 2xha_A          151 KQGEMLA  157 (193)
T ss_dssp             CTTCEEE
T ss_pred             CCCCCcc
Confidence            9999986

>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}

Probab=94.13  E-value=0.05  Score=46.69  Aligned_cols=51  Identities=27%  Similarity=0.283  Sum_probs=41.4

Q ss_pred             CccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceee-EEecCCCeEEEEEecCCC
Q 023761          206 PMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMN-EIEADRSGTIVEIIAEDR  263 (277)
Q Consensus       206 Pm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~-eI~Ap~sG~V~~IlVe~G  263 (277)
                      |.-|.-..       +++.+|+.|.+|+.|+.|.+.|-.. -|+||++|+|.-+.--.+
T Consensus       106 paeG~~V~-------~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~e~p~  157 (169)
T 3d4r_A          106 PAEGYKVY-------PIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMNEIPS  157 (169)
T ss_dssp             EECSSEEE-------ECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEEEETT
T ss_pred             EeCceEEE-------EEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEEecCC
Confidence            45555555       7899999999999999999999764 489999999987764433

>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}

Probab=93.99  E-value=0.06  Score=46.64  Aligned_cols=48  Identities=15%  Similarity=0.036  Sum_probs=40.9

Q ss_pred             CCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCc
Q 023761          216 APGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKP  265 (277)
Q Consensus       216 ~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~  265 (277)
                      +.+...+|+.||.|++||+||..  ++...+|-++++|+|.=..+.+|..
T Consensus        59 pyGa~L~V~dG~~V~~G~~laew--Dp~t~pIisE~~G~V~f~dii~G~t  106 (190)
T 2auk_A           59 PYGAVLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDGQT  106 (190)
T ss_dssp             CTTCEESSCTTCEECTTCEEEEC--CSSEEEEECSSCEEEEEESCCBTTT
T ss_pred             CCCCEEEecCCCEEcCCCEEEEE--cCcCCcEEeccccEEEEEeccCCcc
Confidence            45666889999999999999976  5889999999999998777777654

>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A

Probab=93.96  E-value=0.043  Score=46.69  Aligned_cols=40  Identities=30%  Similarity=0.460  Sum_probs=30.6

Q ss_pred             CCccCCccEEEEecCC----------CCC------------------CCcccCCCEEecCCeEEEEEc
Q 023761          201 PPLKCPMAGTFYRSPA----------PGE------------------PPFVKVGDRVQKGQVLCIIEA  240 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~----------p~~------------------~~~VkvGd~V~kGqvL~~IEa  240 (277)
                      ..|+||+.|++..--+          -+.                  ..+|++||+|++||.|+.++-
T Consensus        50 ~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d~  117 (162)
T 1ax3_A           50 GIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVDL  117 (162)
T ss_dssp             SEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECSSSTTTTTTTTEEESCCCCSEECSEEEEEEECH
T ss_pred             CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECccchhcCCCccEEEEeCCCEEcCCCEEEEECH
Confidence            4789999999986321          111                  138999999999999999874

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.84  E-value=0.048  Score=42.08  Aligned_cols=34  Identities=18%  Similarity=0.280  Sum_probs=31.5

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCCEE-ecCCeEEEEEcc
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRV-QKGQVLCIIEAM  241 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V-~kGqvL~~IEam  241 (277)
                      ..|+||..|++.+       +++++||.| ..||+|+.|+..
T Consensus        51 ~~i~Ap~~G~v~~-------i~v~~G~~Vv~~G~~l~~i~~~   85 (98)
T 2dnc_A           51 VTLDASDDGILAK-------IVVEEGSKNIRLGSLIGLIVEE   85 (98)
T ss_dssp             EEEECSSCEEEEE-------CSSCTTCCCEESSCEEEEEECT
T ss_pred             eEEeCCCCEEEEE-------EEeCCCCEEcCCCCEEEEEecC
Confidence            5799999999999       999999998 999999999864

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}

Probab=93.71  E-value=0.055  Score=42.55  Aligned_cols=34  Identities=18%  Similarity=0.258  Sum_probs=31.4

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCC-EEecCCeEEEEEcc
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGD-RVQKGQVLCIIEAM  241 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd-~V~kGqvL~~IEam  241 (277)
                      ..|+||..|++.+       +++++|+ .|..||+|+.|+..
T Consensus        51 ~~i~Ap~~G~V~~-------i~v~~G~~~V~~G~~l~~i~~~   85 (108)
T 2dne_A           51 VGFESLEECYMAK-------ILVAEGTRDVPIGAIICITVGK   85 (108)
T ss_dssp             EEEECSSSEEEEE-------CSSCTTCCSEETTCEEEEEESC
T ss_pred             eEEeCCCCEEEEE-------EEeCCCCeeecCCCEEEEEecC
Confidence            4799999999999       9999999 89999999999864

>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A

Probab=93.24  E-value=0.089  Score=44.70  Aligned_cols=40  Identities=20%  Similarity=0.315  Sum_probs=30.4

Q ss_pred             CCccCCccEEEEecCC----------CC------------------CCCcccCCCEEecCCeEEEEEc
Q 023761          201 PPLKCPMAGTFYRSPA----------PG------------------EPPFVKVGDRVQKGQVLCIIEA  240 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~----------p~------------------~~~~VkvGd~V~kGqvL~~IEa  240 (277)
                      ..|+||+.|++..--+          -+                  -..+|++||+|++||.|+.++-
T Consensus        50 ~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d~  117 (161)
T 1f3z_A           50 NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFDL  117 (161)
T ss_dssp             SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTTTEEECSCTTCEECTTCEEEEECH
T ss_pred             CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccchhcCCCccEEEEeCcCEECCCCEEEEECH
Confidence            4789999999976311          01                  1138999999999999999874

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A

Probab=92.85  E-value=0.075  Score=43.36  Aligned_cols=35  Identities=26%  Similarity=0.362  Sum_probs=31.8

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCC-EEecCCeEEEEEccc
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGD-RVQKGQVLCIIEAMK  242 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd-~V~kGqvL~~IEamK  242 (277)
                      ..|.||..|++.+       ++|++|| .|..||+|+.|+...
T Consensus        71 ~~I~Ap~~G~V~~-------i~v~~Gd~~V~~G~~L~~i~~~~  106 (128)
T 1y8o_B           71 IGFEVQEEGYLAK-------ILVPEGTRDVPLGTPLCIIVEKE  106 (128)
T ss_dssp             EEEECCSCEEEEE-------ESSCTTCCSEETTCEEEEEESSG
T ss_pred             eEEeCCCCeEEEE-------EEeCCCCeeecCCCEEEEEecCc
Confidence            4799999999999       9999998 899999999998643

>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*

Probab=92.68  E-value=0.074  Score=41.29  Aligned_cols=36  Identities=25%  Similarity=0.442  Sum_probs=31.6

Q ss_pred             CCCccCCccEEEEecCCCCCCCcccCCCEEecC-CeEEEEEccc
Q 023761          200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKG-QVLCIIEAMK  242 (277)
Q Consensus       200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kG-qvL~~IEamK  242 (277)
                      ...|+||+.|++..       .++++|+.|..| +.|+.|....
T Consensus        67 ~~~i~AP~~G~V~~-------~~~~~G~~v~~g~~~l~~i~~~~  103 (116)
T 2k32_A           67 HTEIKAPFDGTIGD-------ALVNIGDYVSASTTELVRVTNLN  103 (116)
T ss_dssp             EEEEECSSSEEECC-------CSCCTTCEECTTTSCCEEEECSC
T ss_pred             CCEEEcCCCEEEEE-------EECCCCCEEcCCCcEEEEEECCC
Confidence            34799999999998       899999999999 9999887643

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}

Probab=92.30  E-value=0.1  Score=53.00  Aligned_cols=33  Identities=24%  Similarity=0.232  Sum_probs=30.9

Q ss_pred             eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          244 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       244 ~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ...|.||..|+|.+++|++||.|+.||+|+.||
T Consensus       612 ~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iE  644 (681)
T 3n6r_A          612 SKMLLCPMPGLIVKVDVEVGQEVQEGQALCTIE  644 (681)
T ss_dssp             CSEEECCSCEEEEEECCCTTCEECTTCEEEEEE
T ss_pred             CCeEECCCcEEEEEEEeCCCCEEcCCCEEEEEE
Confidence            456999999999999999999999999999986

>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A

Probab=92.09  E-value=0.14  Score=47.74  Aligned_cols=62  Identities=8%  Similarity=0.007  Sum_probs=46.0

Q ss_pred             CccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 023761          202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI  275 (277)
Q Consensus       202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~I  275 (277)
                      .|.++..|.+..-     ...++.|+.|++||+|+.+-.    .+|.+|.+|++.-.  . .-.|..|+.++.|
T Consensus       265 ~v~a~~~g~~~~~-----~~~~~~g~~V~~G~~La~i~d----~~v~a~~dG~~i~~--p-~p~V~~G~~~~~i  326 (350)
T 2bco_A          265 TIVRLHDDFDFMF-----DDNVENFTSFVHGEVFGHDGD----KPLMAKNDNEAIVF--P-NRHVAIGQRAALM  326 (350)
T ss_dssp             EEECCSSSEEESS-----CTTCCBTEECCTTCEEEEETT----EEEECSSSSCEEES--C-CTTCCTTSEEEEE
T ss_pred             EEEcCCCCeEEec-----cccccCCCEeCCCCEEEEECC----EEEEeCCCCEEEEe--c-CCCCCCCcEEEEE
Confidence            4667766765520     035799999999999999854    78899999987643  2 5778888877765

>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*

Probab=90.28  E-value=0.19  Score=54.92  Aligned_cols=37  Identities=16%  Similarity=0.179  Sum_probs=30.6

Q ss_pred             CCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEE
Q 023761          218 GEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIV  256 (277)
Q Consensus       218 ~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~  256 (277)
                      +...+|+.||.|++||+||..+  ....+|-++++|+|.
T Consensus      1000 gs~l~v~~g~~V~~g~~ia~wD--p~~~piise~~G~v~ 1036 (1407)
T 3lu0_D         1000 GAVLAKGDGEQVAGGETVANWD--PHTMPVITEVSGFVR 1036 (1407)
T ss_dssp             TCEESSCSSCEECTTCEEEECC--SSCCCEECSSCEEEE
T ss_pred             CCEEEEcCCCEecCCCEEEEEe--cCceeEEeccceEEE
Confidence            4457899999999999999875  567788888888765

>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}

Probab=89.74  E-value=0.074  Score=50.34  Aligned_cols=50  Identities=24%  Similarity=0.211  Sum_probs=35.9

Q ss_pred             CCCCc--ccCCCEEecCCeEEEEEccceeeEEecCCCeEEE------------------E----------EecCCCCccC
Q 023761          218 GEPPF--VKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIV------------------E----------IIAEDRKPVS  267 (277)
Q Consensus       218 ~~~~~--VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~------------------~----------IlVe~Gd~V~  267 (277)
                      ++-+.  |+.|+.|+.||+|+      -...|-|+++|+|.                  +          ++|.+||.|.
T Consensus       118 ga~l~~~v~~g~~v~~G~vla------k~~aiiaeidG~V~fg~~kr~i~i~~~~g~~~eylip~~~~k~~~v~~Gd~V~  191 (352)
T 2xhc_A          118 SAGIEPGLRVGTKVKQGLPLS------KNEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEVK  191 (352)
T ss_dssp             GGCBCTTCCTTCEECTTCBSB------SSSSCBCCSCEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEEC
T ss_pred             CcEEEEecCCCCEEccCcEEe------cCceEEeccceEEEECCcEEEEEEECCCCCEEEEEEcCCCCcCeeeCCCCEEe
Confidence            44466  99999999999887      23445555555554                  2          2477889999


Q ss_pred             CCCeEE
Q 023761          268 VDTPLF  273 (277)
Q Consensus       268 ~GqpL~  273 (277)
                      .|++|.
T Consensus       192 ~G~~l~  197 (352)
T 2xhc_A          192 QGEMLA  197 (352)
T ss_dssp             TTCEEE
T ss_pred             CCCCcc
Confidence            999986

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A

Probab=89.56  E-value=0.22  Score=51.13  Aligned_cols=32  Identities=25%  Similarity=0.410  Sum_probs=30.4

Q ss_pred             eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          245 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       245 ~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ..|.||..|+|.+++|++||.|..||+|+.|+
T Consensus       650 ~~v~ap~~G~V~~v~V~~Gd~V~~Gq~L~~iE  681 (718)
T 3bg3_A          650 GQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLS  681 (718)
T ss_dssp             SCEECSSCEEEEEECSCTTCCBCTTCCCEEEE
T ss_pred             ceEeCCCCeEEEEEEeCCCCeeCCCCEEEEEe
Confidence            46999999999999999999999999999987

>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1

Probab=89.21  E-value=0.43  Score=41.41  Aligned_cols=21  Identities=14%  Similarity=0.297  Sum_probs=18.9

Q ss_pred             CcccCCCEEecCCeEEEEEcc
Q 023761          221 PFVKVGDRVQKGQVLCIIEAM  241 (277)
Q Consensus       221 ~~VkvGd~V~kGqvL~~IEam  241 (277)
                      ++|++||+|++||.|+.++-.
T Consensus       120 ~~V~~Gd~Vk~Gd~L~~fD~~  140 (183)
T 3our_B          120 RIAEEGQTVKAGDTVIEFDLA  140 (183)
T ss_dssp             ECSCTTCEECTTCEEEEECHH
T ss_pred             EEEeCcCEEcCCCEEEEECHH
Confidence            889999999999999998643

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=88.89  E-value=0.29  Score=52.70  Aligned_cols=33  Identities=24%  Similarity=0.436  Sum_probs=30.9

Q ss_pred             eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          244 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       244 ~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ...|.||..|+|.+++|++||.|..||+|+.|+
T Consensus      1077 ~~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~ie 1109 (1150)
T 3hbl_A         1077 PSHIGAQMPGSVTEVKVSVGETVKANQPLLITE 1109 (1150)
T ss_dssp             SSEEECSSSEEEEEECCCTTCEECTTCEEEEEE
T ss_pred             CceeecCceEEEEEEEeCCCCEECCCCEEEEEE
Confidence            357999999999999999999999999999986

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}

Probab=88.35  E-value=0.34  Score=52.61  Aligned_cols=32  Identities=16%  Similarity=0.229  Sum_probs=30.1

Q ss_pred             eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          245 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       245 ~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ..|.||..|+|.+++|++||.|+.||+|+.||
T Consensus      1168 ~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iE 1199 (1236)
T 3va7_A         1168 ELLYSEYTGRFWKPVAAVGDHVEAGDGVIIIE 1199 (1236)
T ss_dssp             EEEECSSCEEEEEESSCTTCEECSSCEEEEEE
T ss_pred             cEEeCCCcEEEEEEEcCCCCEECCCCEEEEEE
Confidence            35899999999999999999999999999986

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*

Probab=86.39  E-value=0.49  Score=50.97  Aligned_cols=32  Identities=22%  Similarity=0.334  Sum_probs=25.7

Q ss_pred             eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          245 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       245 ~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ..|.||..|+|.+++|++||.|..||+|+.|+
T Consensus      1096 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~iE 1127 (1165)
T 2qf7_A         1096 AHVGAPMPGVISRVFVSSGQAVNAGDVLVSIE 1127 (1165)
T ss_dssp             TEEECSSCEEEEEECCSSCCCC---CEEEEEE
T ss_pred             ceeeCCCCeEEEEEEcCCcCEeCCCCEEEEEE
Confidence            46889999999999999999999999999886

>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}

Probab=84.65  E-value=0.76  Score=40.22  Aligned_cols=34  Identities=24%  Similarity=0.431  Sum_probs=29.6

Q ss_pred             CCCccCCccEEEEecCCCCCCCcccCCCEEecC--CeEEEEEc
Q 023761          200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKG--QVLCIIEA  240 (277)
Q Consensus       200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kG--qvL~~IEa  240 (277)
                      ...|+||+.|++..       +++++|+.|..|  +.|+.|..
T Consensus       130 ~~~I~AP~~G~V~~-------~~~~~G~~v~~g~~~~l~~i~~  165 (277)
T 2f1m_A          130 YTKVTSPISGRIGK-------SNVTEGALVQNGQATALATVQQ  165 (277)
T ss_dssp             TTEECCSSCEEECC-------CSSCBTCEECTTCSSCSEEEEE
T ss_pred             cCEEECCCCeEEEe-------EEcCCCCEEcCCCCceeEEEec
Confidence            35899999999999       899999999999  57887754

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A

Probab=82.87  E-value=0.24  Score=47.71  Aligned_cols=35  Identities=23%  Similarity=0.338  Sum_probs=0.0

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccc
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK  242 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK  242 (277)
                      ..|.||..|++.+       ++|++||.|..||+|+.|+...
T Consensus        46 ~~i~ap~~G~v~~-------i~v~~G~~V~~G~~l~~i~~~~   80 (428)
T 3dva_I           46 VEIPSPVKGKVLE-------ILVPEGTVATVGQTLITLDAPG   80 (428)
T ss_dssp             ------------------------------------------
T ss_pred             EEEecCCCeEEEE-------EEeCCCCEeCCCCEEEEEecCC
Confidence            4799999999999       9999999999999999998643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	277
d1bdoa_	80	b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carbox	8e-23
d1dcza_	77	b.84.1.1 (A:) Biotin carboxyl carrier domain of tr	2e-16
d1laba_	80	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	7e-14
d1gjxa_	81	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	8e-14
d1k8ma_	87	b.84.1.1 (A:) Lipoyl domain of the mitochondrial b	8e-14
d1qjoa_	80	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	2e-13
d1iyua_	79	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	2e-13
d1pmra_	80	b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate	5e-12
d1ghja_	79	b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate	2e-11
d1y8ob1	102	b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoa	1e-07

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

 Score = 87.3 bits (216), Expect = 8e-23
 Identities = 40/73 (54%), Positives = 53/73 (72%)

Query: 204 KCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDR 263
           + PM GTFYR+P+P    F++VG +V  G  LCI+EAMK+MN+IEAD+SGT+  I+ E  
Sbjct: 8   RSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESG 67

Query: 264 KPVSVDTPLFVIE 276
           +PV  D PL VIE
Sbjct: 68  QPVEFDEPLVVIE 80

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Length = 77

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

 Score = 70.3 bits (172), Expect = 2e-16
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 7/73 (9%)

Query: 203 LKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAED 262
           +  P+AGT  +         VK GD V+ GQ + ++EAMK+  EI A   G + +++ ++
Sbjct: 11  IPAPLAGTVSK-------ILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKE 63

Query: 263 RKPVSVDTPLFVI 275
           R  V     L  I
Sbjct: 64  RDAVQGGQGLIKI 76

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 63.2 bits (154), Expect = 7e-14
 Identities = 17/55 (30%), Positives = 29/55 (52%)

Query: 222 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276
           FVK GD V +  VLC ++  K + EI +   G ++EI+  +    +V   L  ++
Sbjct: 22  FVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLD 76

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} Length = 81

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

 Score = 63.3 bits (154), Expect = 8e-14
 Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 2/75 (2%)

Query: 203 LKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAED 262
           LK P  G             V VGD +     L  +E  K   ++ A+ +G + E+  + 
Sbjct: 5   LKVPDIGGHE--NVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKV 62

Query: 263 RKPVSVDTPLFVIEP 277
              +S    + V+E 
Sbjct: 63  GDKISEGGLIVVVEA 77

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (154), Expect = 8e-14
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 222 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276
           +VK GD V +   +C +++ K    I +   G I ++         V  PL  IE
Sbjct: 25  YVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIE 79

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 62.1 bits (151), Expect = 2e-13
 Identities = 16/56 (28%), Positives = 25/56 (44%)

Query: 222 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277
            VKVGD+V   Q L  +E  K   E+ A  +G + E+       V   + + + E 
Sbjct: 21  MVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV 76

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Length = 79

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 61.8 bits (150), Expect = 2e-13
 Identities = 12/56 (21%), Positives = 27/56 (48%)

Query: 222 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277
            VK GD ++  Q L ++E+ K   E+ + ++G +  +  +    +     +  +EP
Sbjct: 19  LVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEP 74

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

 Score = 58.2 bits (141), Expect = 5e-12
 Identities = 14/55 (25%), Positives = 26/55 (47%)

Query: 222 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276
             K GD V + +VL  IE  K++ E+ A   G +  ++ ++   V+    L  + 
Sbjct: 23  HKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLR 77

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} Length = 79

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

 Score = 56.4 bits (136), Expect = 2e-11
 Identities = 14/56 (25%), Positives = 27/56 (48%)

Query: 222 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277
             K G+ V++ +++  IE  K++ E+ A+  G I EI+  +   V     L  +  
Sbjct: 22  HKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE 77

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (111), Expect = 1e-07
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 222 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAED-RKPVSVDTPLFVIE 276
             KVG+++ +G +L  IE  K     E    G + +I+  +  + V + TPL +I 
Sbjct: 26  EKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIV 81

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	277
d1bdoa_	80	Biotinyl domain of acetyl-CoA carboxylase {Escheri	99.89
d1dcza_	77	Biotin carboxyl carrier domain of transcarboxylase	99.79
d1iyua_	79	Lipoyl domain of dihydrolipoamide acetyltransferas	99.66
d1ghja_	79	Lipoyl domain of the 2-oxoglutarate dehydrogenase	99.58
d1qjoa_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	99.58
d1k8ma_	87	Lipoyl domain of the mitochondrial branched-chain	99.55
d1laba_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	99.55
d1gjxa_	81	Lipoyl domain of dihydrolipoamide acetyltransferas	99.5
d1y8ob1	102	Lipoyl domain of dihydrolipoamide acetyltransferas	99.43
d1pmra_	80	Lipoyl domain of the 2-oxoglutarate dehydrogenase	99.43
d1vf7a_	237	Multidrug resistance protein MexA domain {Pseudomo	97.75
d1onla_	127	Protein H of glycine cleavage system {Thermus ther	97.16
d1hpca_	131	Protein H of glycine cleavage system {Pea (Pisum s	97.12
d1dcza_	77	Biotin carboxyl carrier domain of transcarboxylase	97.0
d1iyua_	79	Lipoyl domain of dihydrolipoamide acetyltransferas	96.48
d1bdoa_	80	Biotinyl domain of acetyl-CoA carboxylase {Escheri	96.47
d1qjoa_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	96.42
d1k8ma_	87	Lipoyl domain of the mitochondrial branched-chain	96.17
d1gpra_	158	Glucose permease IIa domain, IIa-glc {Bacillus sub	96.08
d1ghja_	79	Lipoyl domain of the 2-oxoglutarate dehydrogenase	95.98
d2f3ga_	150	Glucose-specific factor III (glsIII) {Escherichia	95.83
d1laba_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	95.8
d1pmra_	80	Lipoyl domain of the 2-oxoglutarate dehydrogenase	95.77
d2gpra_	154	Glucose permease IIa domain, IIa-glc {Mycoplasma c	95.48
d1gjxa_	81	Lipoyl domain of dihydrolipoamide acetyltransferas	95.34
d1gpra_	158	Glucose permease IIa domain, IIa-glc {Bacillus sub	94.46
d2gpra_	154	Glucose permease IIa domain, IIa-glc {Mycoplasma c	94.45
d2f3ga_	150	Glucose-specific factor III (glsIII) {Escherichia	93.73
d1y8ob1	102	Lipoyl domain of dihydrolipoamide acetyltransferas	93.41
d1brwa3	103	Pyrimidine nucleoside phosphorylase {Bacillus stea	85.58
d1e2wa2	64	Cytochrome f, small domain {Chlamydomonas reinhard	82.76
d1brwa3	103	Pyrimidine nucleoside phosphorylase {Bacillus stea	81.48
d1uoua3	105	Thymidine phosphorylase {Human (Homo sapiens) [Tax	81.33

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=2.8e-23  Score=157.75  Aligned_cols=75  Identities=53%  Similarity=0.994  Sum_probs=73.8

Q ss_pred             CccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      .|+|||+|+||++|+|+.++||++||+|++||+||+||+||++++|+||++|+|.+|++++||.|++||+||.|+
T Consensus         6 ~I~aPm~G~~~~~~~p~~~~~V~~Gd~V~~Gq~l~~iEamKm~~~i~a~~~G~v~~i~v~~G~~V~~G~~L~~ie   80 (80)
T d1bdoa_           6 IVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE   80 (80)
T ss_dssp             EEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred             EEeCCCcEEEEecCCCCCCeEccCCCeEeCCCEEEEEEcCcccEEEEcCCCeEEEEEEeCCCCEECCCCEEEEEC
Confidence            699999999999999999999999999999999999999999999999999999999999999999999999986

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=99.79  E-value=1.2e-19  Score=136.15  Aligned_cols=69  Identities=33%  Similarity=0.540  Sum_probs=67.1

Q ss_pred             CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 023761          200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI  275 (277)
Q Consensus       200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~I  275 (277)
                      ...|+|||+|++++       |+|++||+|++||+||+||+||+.++|+||++|+|.+|++++||.|++|++|++|
T Consensus         8 ~~~v~ap~~G~v~~-------~~V~~Gd~V~~G~~l~~vE~~K~~~~i~ap~~G~V~~i~v~~G~~V~~G~~L~~i   76 (77)
T d1dcza_           8 EGEIPAPLAGTVSK-------ILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI   76 (77)
T ss_dssp             SSEEEBSSSCEEEE-------ECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEE
T ss_pred             CCEEECCCCcEEEE-------EEcCCCCEEeCCCeEEEEEccCccEEEEeCCCEEEEEEeeCCCCEECCCCEEEEe
Confidence            34799999999999       9999999999999999999999999999999999999999999999999999997

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.66  E-value=5.3e-17  Score=122.01  Aligned_cols=68  Identities=21%  Similarity=0.381  Sum_probs=64.2

Q ss_pred             ccCC---ccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761          203 LKCP---MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP  277 (277)
Q Consensus       203 I~AP---m~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep  277 (277)
                      |+.|   +.|++.+       |+|++||.|++||+||+||+||+.++|+|+++|+|.+++++.||.|..|++|+.|++
T Consensus         4 i~~P~~g~~g~i~~-------~~v~~Gd~V~~gd~l~~iE~~K~~~~i~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~   74 (79)
T d1iyua_           4 IRVPDIGGDGEVIE-------LLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEP   74 (79)
T ss_dssp             EECCCCSSEEEEEE-------ECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEEC
T ss_pred             EECCCCCCCEEEEE-------EEecCCCEEecCceEEEEEecCcEEEEEeccccEEEEEeeCCCCEECCCCEEEEEec
Confidence            4445   6789999       999999999999999999999999999999999999999999999999999999985

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.58  E-value=1.9e-15  Score=113.63  Aligned_cols=63  Identities=25%  Similarity=0.319  Sum_probs=61.0

Q ss_pred             cEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761          208 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP  277 (277)
Q Consensus       208 ~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep  277 (277)
                      .|++.+       |+|++||.|++||+||+||+||+.++|+||++|+|.++++++||.|..|++|+.|+.
T Consensus        15 eg~i~~-------w~v~~Gd~V~~gd~l~~vEt~K~~~ei~a~~~G~v~~i~v~~Gd~v~~G~~l~~i~~   77 (79)
T d1ghja_          15 DGTVAT-------WHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE   77 (79)
T ss_dssp             CEEECC-------CSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred             EEEEEE-------EEcCCCCEEeeCccEEEEEcCceEEEEEeceeEEEEEEEcCCCCEECCCCEEEEEeC
Confidence            599999       999999999999999999999999999999999999999999999999999999863

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=1.5e-15  Score=114.17  Aligned_cols=63  Identities=25%  Similarity=0.297  Sum_probs=60.3

Q ss_pred             cEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761          208 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP  277 (277)
Q Consensus       208 ~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep  277 (277)
                      .|++.+       |++++||.|++||+||+||+||+.++|.||++|+|.+++++.||.|..|++|+.|+.
T Consensus        14 ~~~v~~-------~~v~~Gd~V~~g~~l~~iEt~K~~~~v~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~   76 (80)
T d1qjoa_          14 EVEVTE-------VMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV   76 (80)
T ss_dssp             CEEEEE-------CCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEES
T ss_pred             eEEEEE-------EEeCCCCEECCCCEEEEEEcCcccceEeCCeeEEEEEEEeCCCCEECCCCEEEEEec
Confidence            358999       999999999999999999999999999999999999999999999999999999863

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3e-15  Score=114.54  Aligned_cols=62  Identities=26%  Similarity=0.282  Sum_probs=60.6

Q ss_pred             cEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          208 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       208 ~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      -|++..       |++++||.|++||+||+||+||+.++|+||++|+|.+++++.|+.|..|++|+.|+
T Consensus        18 eg~i~~-------w~v~~Gd~V~~g~~l~~vEt~K~~~~v~A~~~G~I~~i~v~~G~~v~~G~~l~~i~   79 (87)
T d1k8ma_          18 EVTVKE-------WYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIE   79 (87)
T ss_dssp             CEEEEE-------ECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEE
T ss_pred             eEEEEE-------EEcCCCCEEecCCEEEEEEccCceEEEEeCCCEEEEEEEeCCCCEECCCCEEEEEE
Confidence            599999       99999999999999999999999999999999999999999999999999999986

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.55  E-value=8.1e-16  Score=116.00  Aligned_cols=62  Identities=29%  Similarity=0.516  Sum_probs=60.4

Q ss_pred             cEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          208 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       208 ~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      -|++.+       |+|++||.|++||+||+||+||+.++|.||.+|+|.+++++.||.|..|++|+.|+
T Consensus        15 eg~i~~-------w~v~~Gd~V~~gd~l~~vEt~K~~~ei~A~~~G~v~~i~v~~Gd~v~~G~~l~~ie   76 (80)
T d1laba_          15 EGEIVK-------WFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLD   76 (80)
T ss_dssp             SEEEEE-------CCCSSCCEECSSCCCEEEECSSCEEEECCSSCEECCCBSSCSSSEECSSSCSBCBB
T ss_pred             eEEEEE-------EEeCCCCEEeeCcCEEEEEcccEEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEEe
Confidence            599999       99999999999999999999999999999999999999999999999999999885

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.50  E-value=2.3e-15  Score=113.39  Aligned_cols=64  Identities=20%  Similarity=0.250  Sum_probs=60.9

Q ss_pred             ccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761          207 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP  277 (277)
Q Consensus       207 m~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep  277 (277)
                      ..|++.+       |+|++||.|++||+||+||+||+.++|+||.+|+|.++++++|+.|..|++|+.|++
T Consensus        14 ~~~~v~~-------w~v~~Gd~V~~gd~l~~iEt~K~~~~i~a~~~G~i~~i~v~~G~~v~~G~~l~~ie~   77 (81)
T d1gjxa_          14 ENVDIIA-------VEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEA   77 (81)
T ss_dssp             SSEEEEE-------ECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECC
T ss_pred             cEEEEEE-------EEeCCCCEECCCCEEEEEEcCCcEEEEEeeeeEEEEEEEeCCCCEECCCCEEEEEec
Confidence            3478888       999999999999999999999999999999999999999999999999999999974

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.2e-13  Score=108.23  Aligned_cols=61  Identities=31%  Similarity=0.468  Sum_probs=59.1

Q ss_pred             cEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCC-ccCCCCeEEEE
Q 023761          208 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK-PVSVDTPLFVI  275 (277)
Q Consensus       208 ~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd-~V~~GqpL~~I  275 (277)
                      -|++.+       |+|++||.|++||+||.||++|+.++|.|+++|+|.++++++|+ .|..|++|+.|
T Consensus        19 eg~i~~-------w~v~~Gd~V~~gd~l~~vETdK~~~ei~a~~~G~l~~i~v~eGd~~v~vG~~ia~i   80 (102)
T d1y8ob1          19 MGTVQR-------WEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCII   80 (102)
T ss_dssp             EEEEEE-------ECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEE
T ss_pred             EEEEEE-------EEeCCCCEEecCccEEEEEcCcEEEEEecCCcEEEEEEEEccCCEEEcCCCEEEEE
Confidence            599999       99999999999999999999999999999999999999999997 69999999988

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=3.1e-15  Score=112.83  Aligned_cols=63  Identities=24%  Similarity=0.273  Sum_probs=60.6

Q ss_pred             ccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          207 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       207 m~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ..|++.+       |+|++||.|++||.||.||+||+.++|.||++|+|.+++++.||.|..|++|++|+
T Consensus        15 ~eg~i~~-------w~v~~Gd~V~~gd~l~~vEtdK~~~ev~a~~~G~l~~i~v~~Gd~v~~G~~l~~i~   77 (80)
T d1pmra_          15 ADATVAT-------WHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLR   77 (80)
T ss_dssp             SCEECCB-------CCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCC
T ss_pred             cEEEEEE-------EEeCCCCEEcCCCEEEEEEcCceEEEEeccCCEEEEEEEeCCCCEECCCCEEEEEe
Confidence            3589999       99999999999999999999999999999999999999999999999999999886

>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Membrane and cell surface proteins and peptides
fold: HlyD-like secretion proteins
superfamily: HlyD-like secretion proteins
family: HlyD-like secretion proteins
domain: Multidrug resistance protein MexA domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.75  E-value=2.4e-06  Score=71.25  Aligned_cols=65  Identities=18%  Similarity=0.246  Sum_probs=56.0

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccce-------------------------------------
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKL-------------------------------------  243 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~-------------------------------------  243 (277)
                      ..|.+++.|++..       ++|++||.|++||+|+.|+...+                                     
T Consensus        16 ~~V~s~v~G~V~~-------v~V~~G~~VkkGq~L~~ld~~~~~~~l~~a~a~~~~a~~~~~r~~~l~~~~~~~~~~~~~   88 (237)
T d1vf7a_          16 AEVRPQVNGIILK-------RLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYAD   88 (237)
T ss_dssp             EEECCSSCEEEEE-------CCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHH
T ss_pred             EEEEeecCEEEEE-------EECCCcCEECCCCEEEEEehHHHHhhhhhhhhhhhhhhhhhhhhhhhhhccccccchhhh
Confidence            3699999999999       99999999999999999975322                                     


Q ss_pred             --------------------eeEEecCCCeEEEEEecCCCCccCCCCeE
Q 023761          244 --------------------MNEIEADRSGTIVEIIAEDRKPVSVDTPL  272 (277)
Q Consensus       244 --------------------~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL  272 (277)
                                          ...|.||++|+|..+.++.|+.+..|..+
T Consensus        89 ~~~~~~~a~~~l~~a~~~l~~~~i~ap~~G~v~~~~~~~g~~~~~~~~~  137 (237)
T d1vf7a_          89 ANAAYLQSKAAVEQARINLRYTKVLSPISGRIGRSAVTEGALVTNGQAN  137 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSS
T ss_pred             hhhhcchhHHHHHHHhhhhcccccccchhceeeeEEeccCcEEcCCcce
Confidence                                33466999999999999999999888644

>d1onla_ b.84.1.1 (A:) Protein H of glycine cleavage system {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Thermus thermophilus [TaxId: 274]

Probab=97.16  E-value=0.00027  Score=55.99  Aligned_cols=40  Identities=33%  Similarity=0.535  Sum_probs=37.4

Q ss_pred             cccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecC
Q 023761          222 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAE  261 (277)
Q Consensus       222 ~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe  261 (277)
                      +.++|+.|++|+.++.||+.|...+|.+|++|+|++++-+
T Consensus        42 lp~~g~~v~~g~~~~~iEs~k~~~~i~sPvsG~Vv~vN~~   81 (127)
T d1onla_          42 LPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLA   81 (127)
T ss_dssp             CBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTH
T ss_pred             CCCCCchhcCCCceEEEeeccceeeccCCccceEEEEhhh
Confidence            4589999999999999999999999999999999999854

>d1hpca_ b.84.1.1 (A:) Protein H of glycine cleavage system {Pea (Pisum sativum) [TaxId: 3888]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Pea (Pisum sativum) [TaxId: 3888]

Probab=97.12  E-value=0.00031  Score=55.98  Aligned_cols=41  Identities=22%  Similarity=0.365  Sum_probs=37.6

Q ss_pred             cccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCC
Q 023761          222 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAED  262 (277)
Q Consensus       222 ~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~  262 (277)
                      +-++|+.|++|+.+|.||+.|...+|.+|++|+|++++-+.
T Consensus        43 lp~~g~~v~~g~~~~~iEs~k~~~~i~sPv~G~vv~vN~~l   83 (131)
T d1hpca_          43 LPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGL   83 (131)
T ss_dssp             CCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHH
T ss_pred             CCCCCccccCCCceEEEEeecccccccCCcchhheeehhhh
Confidence            35899999999999999999999999999999999997543

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=97.00  E-value=0.00028  Score=51.15  Aligned_cols=32  Identities=28%  Similarity=0.504  Sum_probs=30.4

Q ss_pred             eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          245 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       245 ~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ..|+||..|+|.+|++++||.|..||+|+.|+
T Consensus         9 ~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~vE   40 (77)
T d1dcza_           9 GEIPAPLAGTVSKILVKEGDTVKAGQTVLVLE   40 (77)
T ss_dssp             SEEEBSSSCEEEEECCCTTCEECTTSEEEEEE
T ss_pred             CEEECCCCcEEEEEEcCCCCEEeCCCeEEEEE
Confidence            47999999999999999999999999999986

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.48  E-value=0.00094  Score=48.42  Aligned_cols=34  Identities=26%  Similarity=0.455  Sum_probs=31.8

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcc
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM  241 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEam  241 (277)
                      ..|+||..|++.+       +++++||.|..||+||.||..
T Consensus        42 ~~i~a~~~G~v~~-------i~v~~G~~V~~G~~l~~ie~~   75 (79)
T d1iyua_          42 MEVPSPKAGVVKS-------VSVKLGDKLKEGDAIIELEPA   75 (79)
T ss_dssp             EEEECSSSSEEEE-------ESCCTTCEEETTSEEEEEECC
T ss_pred             EEEEeccccEEEE-------EeeCCCCEECCCCEEEEEecC
Confidence            4799999999999       999999999999999999864

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

Probab=96.47  E-value=0.00095  Score=48.81  Aligned_cols=32  Identities=25%  Similarity=0.366  Sum_probs=30.5

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEE
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIE  239 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IE  239 (277)
                      ..|+||..|++.+       ++|+.||.|..||+|+.||
T Consensus        49 ~~i~a~~~G~v~~-------i~v~~G~~V~~G~~L~~ie   80 (80)
T d1bdoa_          49 NQIEADKSGTVKA-------ILVESGQPVEFDEPLVVIE   80 (80)
T ss_dssp             EEEECSSCEEEEE-------ECSCTTCEECTTCEEEEEC
T ss_pred             EEEEcCCCeEEEE-------EEeCCCCEECCCCEEEEEC
Confidence            4799999999999       9999999999999999987

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=96.42  E-value=0.001  Score=48.39  Aligned_cols=34  Identities=32%  Similarity=0.526  Sum_probs=31.7

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcc
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM  241 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEam  241 (277)
                      ..|.||..|++.+       +++++||.|+.||+||.||..
T Consensus        44 ~~v~a~~~G~v~~-------i~v~~G~~V~~G~~l~~ie~e   77 (80)
T d1qjoa_          44 MEVPAPFAGVVKE-------LKVNVGDKVKTGSLIMIFEVE   77 (80)
T ss_dssp             EEEEBSSCEEEEE-------CCCCTTCEECTTCCCEEEESC
T ss_pred             ceEeCCeeEEEEE-------EEeCCCCEECCCCEEEEEecC
Confidence            4799999999999       999999999999999999864

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.0023  Score=47.31  Aligned_cols=35  Identities=17%  Similarity=0.228  Sum_probs=32.5

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccc
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK  242 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK  242 (277)
                      ..|.||..|++.+       +++++||.|+.|++||.|+...
T Consensus        48 ~~v~A~~~G~I~~-------i~v~~G~~v~~G~~l~~i~~~~   82 (87)
T d1k8ma_          48 VTITSRYDGVIKK-------LYYNLDDIAYVGKPLVDIETEA   82 (87)
T ss_dssp             EECCCSSCEEEEE-------ECCCSSCEECTTSEEEEEECSC
T ss_pred             EEEEeCCCEEEEE-------EEeCCCCEECCCCEEEEEEcCC
Confidence            4799999999999       9999999999999999998754

>d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Bacillus subtilis [TaxId: 1423]

Probab=96.08  E-value=0.0068  Score=49.45  Aligned_cols=65  Identities=17%  Similarity=0.295  Sum_probs=51.8

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCCEE----ecCCeEEEEEccceeeEEecCCCeEEE--------------------
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRV----QKGQVLCIIEAMKLMNEIEADRSGTIV--------------------  256 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V----~kGqvL~~IEamK~~~eI~Ap~sG~V~--------------------  256 (277)
                      ..|.||+.|++..        +-++.|.|    --|+-++++-..   ..|.||++|+|.                    
T Consensus        10 ~~i~aP~~G~vi~--------L~~V~D~vFs~~~~G~G~aI~P~~---~~v~AP~~G~I~~i~~T~HAigi~t~~G~evL   78 (158)
T d1gpra_          10 EVFVSPITGEIHP--------ITDVPDQVFSGKMMGDGFAILPSE---GIVVSPVRGKILNVFPTKHAIGLQSDGGREIL   78 (158)
T ss_dssp             BCCBCSSSEEEEE--------GGGSSSHHHHTTSSCEEEEEEESS---CEEECSSSEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             EEEEecCCcEEEE--------hhhCCChHhccCCccceEEEEEcC---CEEEEeeCeEEEEEcCCCCEEEEEeCCCeEEE
Confidence            3699999999987        55666665    237777776544   468999999887                    


Q ss_pred             ---------------EEecCCCCccCCCCeEEEEc
Q 023761          257 ---------------EIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       257 ---------------~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                                     +++++.||.|..||+|+++.
T Consensus        79 iHiGiDTV~L~G~gF~~~v~~Gd~Vk~G~~L~~~D  113 (158)
T d1gpra_          79 IHFGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVD  113 (158)
T ss_dssp             EECSBSCGGGTTTTEEECCCTTCEECTTCEEEEEC
T ss_pred             EEEeecccccCCcceEEEEcCCCEEcCCCEEEEeC
Confidence                           78899999999999999873

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.98  E-value=0.0024  Score=46.29  Aligned_cols=33  Identities=18%  Similarity=0.224  Sum_probs=31.0

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEc
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA  240 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEa  240 (277)
                      ..|.||..|++.+       +++++||.|..||+|++|+.
T Consensus        45 ~ei~a~~~G~v~~-------i~v~~Gd~v~~G~~l~~i~~   77 (79)
T d1ghja_          45 MEVLAEADGVIAE-------IVKNEGDTVLSGELLGKLTE   77 (79)
T ss_dssp             EEEECSSCEEEEE-------ESSCTTCEECTTCEEEEECC
T ss_pred             EEEEeceeEEEEE-------EEcCCCCEECCCCEEEEEeC
Confidence            4799999999999       99999999999999999975

>d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose-specific factor III (glsIII)
species: Escherichia coli [TaxId: 562]

Probab=95.83  E-value=0.0053  Score=49.75  Aligned_cols=64  Identities=27%  Similarity=0.354  Sum_probs=49.4

Q ss_pred             CccCCccEEEEecCCCCCCCcccCCCEEec----CCeEEEEEccceeeEEecCCCeEEE---------------------
Q 023761          202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQK----GQVLCIIEAMKLMNEIEADRSGTIV---------------------  256 (277)
Q Consensus       202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~k----GqvL~~IEamK~~~eI~Ap~sG~V~---------------------  256 (277)
                      .|.||+.|++..        +-++-|.|=.    |+-++++-..   ..|.||++|+|.                     
T Consensus         3 ~i~aP~~G~vi~--------L~~v~D~vFs~~~mG~GvAI~P~~---~~v~AP~dG~V~~v~~T~HAigi~t~~G~eiLI   71 (150)
T d2f3ga_           3 EIIAPLSGEIVN--------IEDVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFV   71 (150)
T ss_dssp             EEECSSSEEEEC--------GGGSSCHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             EEEEecCceEEE--------cccCCChHHhcCCccCeEEEEeCC---CeEEeecCEEEEEECCCCCEEEEEeCCceEEEE
Confidence            588999999987        4456555443    6777776544   468899999887                     


Q ss_pred             --------------EEecCCCCccCCCCeEEEEc
Q 023761          257 --------------EIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       257 --------------~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                                    +.+++.||.|..||+|+++.
T Consensus        72 HiGidTV~L~G~gF~~~v~~Gd~V~~G~~L~~~D  105 (150)
T d2f3ga_          72 HFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFD  105 (150)
T ss_dssp             ECSBSGGGGTTTTEEECSCTTCEECTTCEEEEEC
T ss_pred             EEccchhhcCCcceEEEecCCCEECCCCEEEEEc
Confidence                          67888899999999999873

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.80  E-value=0.00088  Score=48.91  Aligned_cols=34  Identities=24%  Similarity=0.358  Sum_probs=31.7

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcc
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM  241 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEam  241 (277)
                      ..|.||..|++.+       +++++||.|+.||+||.||..
T Consensus        45 ~ei~A~~~G~v~~-------i~v~~Gd~v~~G~~l~~ie~~   78 (80)
T d1laba_          45 VEIPSPVKGKVLE-------ILVPEGTVATVGQTLITLDAP   78 (80)
T ss_dssp             EEECCSSCEECCC-------BSSCSSSEECSSSCSBCBBCS
T ss_pred             EEEEcCCCEEEEE-------EEeCCCCEECCCCEEEEEecC
Confidence            4799999999999       999999999999999999864

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

Probab=95.77  E-value=0.0018  Score=47.27  Aligned_cols=34  Identities=15%  Similarity=0.189  Sum_probs=31.4

Q ss_pred             CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEc
Q 023761          200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA  240 (277)
Q Consensus       200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEa  240 (277)
                      ...|.||..|++.+       +++++||.|..||+||.|+.
T Consensus        45 ~~ev~a~~~G~l~~-------i~v~~Gd~v~~G~~l~~i~e   78 (80)
T d1pmra_          45 VLEVPASADGILDA-------VLEDEGTTVTSRQILGRLRE   78 (80)
T ss_dssp             CCCCBCCSBCCCCB-------CTTCTTCEECSSSEEEBCCC
T ss_pred             EEEEeccCCEEEEE-------EEeCCCCEECCCCEEEEEeC
Confidence            35799999999999       99999999999999999974

>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Mycoplasma capricolum [TaxId: 2095]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Mycoplasma capricolum [TaxId: 2095]

Probab=95.48  E-value=0.012  Score=47.81  Aligned_cols=65  Identities=25%  Similarity=0.349  Sum_probs=50.5

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCCEE----ecCCeEEEEEccceeeEEecCCCeEEE--------------------
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRV----QKGQVLCIIEAMKLMNEIEADRSGTIV--------------------  256 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V----~kGqvL~~IEamK~~~eI~Ap~sG~V~--------------------  256 (277)
                      ..|.||+.|++..        .-++-|.|    --|+-++++-..   ..|.||++|+|.                    
T Consensus         8 ~~i~aP~~G~vi~--------l~~v~D~vFs~k~~G~G~aI~P~~---~~v~AP~dG~I~~i~~T~HAigi~t~~G~eiL   76 (154)
T d2gpra_           8 LKVLAPCDGTIIT--------LDEVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEIL   76 (154)
T ss_dssp             EEEECSSSEEEEC--------GGGSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEEE
T ss_pred             eEEEecCCceEEE--------cccCCChhhccCCCcCeEEEEecC---CEEEEecCeEEEEECCCCcEEEEEeCCCCEEE
Confidence            4699999999987        44555554    246777776543   568899999887                    


Q ss_pred             ---------------EEecCCCCccCCCCeEEEEc
Q 023761          257 ---------------EIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       257 ---------------~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                                     +.+++.||.|..||+|+++.
T Consensus        77 IHiGidTV~L~G~gF~~~v~~Gd~V~~G~~L~~~D  111 (154)
T d2gpra_          77 LHIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVD  111 (154)
T ss_dssp             EECSSSGGGGTTCSEEECCCTTCEECTTCEEEEEC
T ss_pred             EEEcccccccCCceeEEEecCCCEEcCCCEEEEEc
Confidence                           68889999999999999873

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

Probab=95.34  E-value=0.0018  Score=47.11  Aligned_cols=34  Identities=29%  Similarity=0.500  Sum_probs=31.4

Q ss_pred             CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcc
Q 023761          201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM  241 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEam  241 (277)
                      ..|.||..|++.+       +++++||.|..||+||.||..
T Consensus        45 ~~i~a~~~G~i~~-------i~v~~G~~v~~G~~l~~ie~~   78 (81)
T d1gjxa_          45 MDVPAEVAGVVKE-------VKVKVGDKISEGGLIVVVEAE   78 (81)
T ss_dssp             EEECCCCSSBBCC-------CCCCSSCEECSSSCCCEECCS
T ss_pred             EEEEeeeeEEEEE-------EEeCCCCEECCCCEEEEEecc
Confidence            4789999999999       999999999999999999863

>d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Bacillus subtilis [TaxId: 1423]

Probab=94.46  E-value=0.018  Score=46.83  Aligned_cols=74  Identities=23%  Similarity=0.280  Sum_probs=45.2

Q ss_pred             CCccCCccEEEEecCCCCC----------------------------CCcccCCCEEecCCeEEEEEccc-------eee
Q 023761          201 PPLKCPMAGTFYRSPAPGE----------------------------PPFVKVGDRVQKGQVLCIIEAMK-------LMN  245 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~----------------------------~~~VkvGd~V~kGqvL~~IEamK-------~~~  245 (277)
                      ..|.||..|++..-.+-+.                            ..+|+.||+|++||.|+.++-..       +..
T Consensus        47 ~~v~AP~~G~I~~i~~T~HAigi~t~~G~evLiHiGiDTV~L~G~gF~~~v~~Gd~Vk~G~~L~~~D~~~i~~~g~~~~t  126 (158)
T d1gpra_          47 GIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVDLDAVKPNVPSLMT  126 (158)
T ss_dssp             CEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSCGGGTTTTEEECCCTTCEECTTCEEEEECHHHHGGGSSBCCE
T ss_pred             CEEEEeeCeEEEEEcCCCCEEEEEeCCCeEEEEEEeecccccCCcceEEEEcCCCEEcCCCEEEEeCHHHHHhhCCCCce
Confidence            4799999999865332111                            28899999999999999986532       222


Q ss_pred             EE--ecCCCeEEEEEecC-CCCccCCCCeEEEEc
Q 023761          246 EI--EADRSGTIVEIIAE-DRKPVSVDTPLFVIE  276 (277)
Q Consensus       246 eI--~Ap~sG~V~~IlVe-~Gd~V~~GqpL~~Ie  276 (277)
                      .|  .-..+.  ..+... .|+....+++|+.|+
T Consensus       127 ~vvvtn~~~~--~~i~~~~~~~v~~g~~~i~~v~  158 (158)
T d1gpra_         127 PIVFTNLAEG--ETVSIKASGSVNREQEDIVKIE  158 (158)
T ss_dssp             EEEESSCCTT--CCEEECCCSEECTTCBCCEEEC
T ss_pred             EEEEEecccc--ceEEEecCCcEEcCCceEEEEC
Confidence            22  222222  223333 444444456788875

>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Mycoplasma capricolum [TaxId: 2095]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Mycoplasma capricolum [TaxId: 2095]

Probab=94.45  E-value=0.015  Score=47.19  Aligned_cols=53  Identities=13%  Similarity=0.166  Sum_probs=33.9

Q ss_pred             CcccCCCEEecCCeEEEEEccce---------eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          221 PFVKVGDRVQKGQVLCIIEAMKL---------MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       221 ~~VkvGd~V~kGqvL~~IEamK~---------~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ++|++||+|++||.|+.++-..+         ..-+.-.....   +.......|..|++|++|+
T Consensus        93 ~~v~~Gd~V~~G~~L~~~D~~~i~~~g~~~~t~vvitn~~~~~---~~~~~~g~V~~Gd~i~~ik  154 (154)
T d2gpra_          93 SFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKSPIIFTNNGGKT---LEIVKMGEVKQGDVVAILK  154 (154)
T ss_dssp             ECCCTTCEECTTCEEEEECHHHHHHHSSCCCEEEEEEECSSCC---CSCBCCEEECTTCEEEEEC
T ss_pred             EEecCCCEEcCCCEEEEEcHHHHHhcCCCCceEEEEEcCCCce---EEecccCcCcCCCEEEEeC
Confidence            88999999999999999864321         11122111111   2222333589999999885

>d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose-specific factor III (glsIII)
species: Escherichia coli [TaxId: 562]

Probab=93.73  E-value=0.039  Score=44.37  Aligned_cols=75  Identities=20%  Similarity=0.306  Sum_probs=47.2

Q ss_pred             CCccCCccEEEEecCCCCC----------------------------CCcccCCCEEecCCeEEEEEccce-------ee
Q 023761          201 PPLKCPMAGTFYRSPAPGE----------------------------PPFVKVGDRVQKGQVLCIIEAMKL-------MN  245 (277)
Q Consensus       201 ~~I~APm~G~~~~sp~p~~----------------------------~~~VkvGd~V~kGqvL~~IEamK~-------~~  245 (277)
                      ..|.||..|++..-.+-+.                            ..+|++||+|++||.|+.++-..+       ..
T Consensus        39 ~~v~AP~dG~V~~v~~T~HAigi~t~~G~eiLIHiGidTV~L~G~gF~~~v~~Gd~V~~G~~L~~~D~~~i~~~g~~~~t  118 (150)
T d2f3ga_          39 NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFDLPLLEEKAKSTLT  118 (150)
T ss_dssp             SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTTTEEECSCTTCEECTTCEEEEECHHHHHHHCSBCCE
T ss_pred             CeEEeecCEEEEEECCCCCEEEEEeCCceEEEEEEccchhhcCCcceEEEecCCCEECCCCEEEEEcHHHHHhcCCCCee
Confidence            4788999998875322111                            288999999999999999865322       22


Q ss_pred             EEecCCCeEEEEEecCCCCccCCCC-eEEEEc
Q 023761          246 EIEADRSGTIVEIIAEDRKPVSVDT-PLFVIE  276 (277)
Q Consensus       246 eI~Ap~sG~V~~IlVe~Gd~V~~Gq-pL~~Ie  276 (277)
                      .+--.-......+....|+ |..|+ +|++|+
T Consensus       119 ~vvitn~~~~~~~~~~~g~-v~~g~~~i~~i~  149 (150)
T d2f3ga_         119 PVVISNMDEIKELIKLSGS-VTVGETPVIRIK  149 (150)
T ss_dssp             EEEETTGGGCSEEEECCSE-ECTTTSEEEEEE
T ss_pred             EEEEECcHhcceeeecCCc-EeeCCcEEEEEE
Confidence            2221112223345556665 67775 798875

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.41  E-value=0.025  Score=42.67  Aligned_cols=26  Identities=23%  Similarity=0.128  Sum_probs=24.5

Q ss_pred             CCeEEEEEecCCCCccCCCCeEEEEc
Q 023761          251 RSGTIVEIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       251 ~sG~V~~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      ..|+|.+|+++.||.|..|++|+.|+
T Consensus        18 ~eg~i~~w~v~~Gd~V~~gd~l~~vE   43 (102)
T d1y8ob1          18 TMGTVQRWEKKVGEKLSEGDLLAEIE   43 (102)
T ss_dssp             SEEEEEEECSCTTCEECTTCEEEEEE
T ss_pred             cEEEEEEEEeCCCCEEecCccEEEEE
Confidence            46999999999999999999999986

>d1brwa3 d.41.3.1 (A:331-433) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Pyrimidine nucleoside phosphorylase C-terminal domain
family: Pyrimidine nucleoside phosphorylase C-terminal domain
domain: Pyrimidine nucleoside phosphorylase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.58  E-value=0.53  Score=34.94  Aligned_cols=20  Identities=15%  Similarity=0.046  Sum_probs=15.7

Q ss_pred             EEecCCCCccCCCCeEEEEc
Q 023761          257 EIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       257 ~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      .++++.||.|+.|++|++|.
T Consensus        49 ~l~~k~Gd~V~~Gd~l~~i~   68 (103)
T d1brwa3          49 VLHKKIGDRVQKGEALATIH   68 (103)
T ss_dssp             EESCCTTCEECTTCEEEEEE
T ss_pred             EEeccCCCEEcCCCeEEEEE
Confidence            45678888888888888873

>d1e2wa2 b.84.2.2 (A:169-232) Cytochrome f, small domain {Chlamydomonas reinhardtii [TaxId: 3055]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Rudiment single hybrid motif
family: Cytochrome f, small domain
domain: Cytochrome f, small domain
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=82.76  E-value=0.44  Score=32.65  Aligned_cols=57  Identities=19%  Similarity=0.253  Sum_probs=30.9

Q ss_pred             cCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccc-eeeEEecCCCeEEEEEecCCCCccCCCCeEE
Q 023761          204 KCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK-LMNEIEADRSGTIVEIIAEDRKPVSVDTPLF  273 (277)
Q Consensus       204 ~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK-~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~  273 (277)
                      .|+..|++..         +..+.. ++|....+|+... -..+..-|+.=   +++|++||.|..||+|-
T Consensus         4 na~~aG~Vs~---------I~~~~~-~kg~~~I~I~~~dGe~~~y~Ip~g~---~l~V~eGd~V~~G~~LT   61 (64)
T d1e2wa2           4 NASAAGKIVA---------ITALSE-KKGGFEVSIEKANGEVVVDKIPAGP---DLIVKEGQTVQADQPLT   61 (64)
T ss_dssp             BCSSCEEEEE---------EEESSS-SSCCEEEEEECTTSCEEEEEECSSS---CBCCCTTCEECTTCBCB
T ss_pred             cCcCCEEEEE---------EEeecc-cCCcEEEEEECCCCCEEEEEcCCCC---eEEECCCCEEeCCCccc
Confidence            4677777765         222211 2444444444433 22333333332   46788888888888874

>d1brwa3 d.41.3.1 (A:331-433) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Pyrimidine nucleoside phosphorylase C-terminal domain
family: Pyrimidine nucleoside phosphorylase C-terminal domain
domain: Pyrimidine nucleoside phosphorylase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=81.48  E-value=0.59  Score=34.68  Aligned_cols=21  Identities=48%  Similarity=0.684  Sum_probs=18.3

Q ss_pred             CcccCCCEEecCCeEEEEEcc
Q 023761          221 PFVKVGDRVQKGQVLCIIEAM  241 (277)
Q Consensus       221 ~~VkvGd~V~kGqvL~~IEam  241 (277)
                      ++++.||.|++||+||.|=+.
T Consensus        50 l~~k~Gd~V~~Gd~l~~i~~~   70 (103)
T d1brwa3          50 LHKKIGDRVQKGEALATIHSN   70 (103)
T ss_dssp             ESCCTTCEECTTCEEEEEEES
T ss_pred             EeccCCCEEcCCCeEEEEEcC
Confidence            459999999999999998554

>d1uoua3 d.41.3.1 (A:374-480) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Pyrimidine nucleoside phosphorylase C-terminal domain
family: Pyrimidine nucleoside phosphorylase C-terminal domain
domain: Thymidine phosphorylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.33  E-value=1  Score=33.46  Aligned_cols=20  Identities=15%  Similarity=0.356  Sum_probs=16.0

Q ss_pred             EEecCCCCccCCCCeEEEEc
Q 023761          257 EIIAEDRKPVSVDTPLFVIE  276 (277)
Q Consensus       257 ~IlVe~Gd~V~~GqpL~~Ie  276 (277)
                      .++++.||.|+.|++|++|.
T Consensus        47 ~l~~k~Gd~V~~G~~l~~ih   66 (105)
T d1uoua3          47 ELLVDVGQRLRRGTPWLRVH   66 (105)
T ss_dssp             EECSCTTCEECTTCEEEEEE
T ss_pred             EEeecCCCEEcCCCeEEEEE
Confidence            35678888899999998873