Citrus Sinensis ID: 023762

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------
Protein Sequence
MDTECWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISSPSKDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRALLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPTGKYRFREGWQLHLYISQLPCGDASLSSCHSAPRNFFSREGNSLSSVDELNGFKDGIYDSLQHIGRVQRKPGRGDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITVGRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKVLHMLE
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHcccccccccccccEEEEEEEEEEccccEEEEEEcccccccccccccccccEEEccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEcccccEEEEcccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccEEEEccHHHHHHHHHHHcHHHHcccccccEEcEEEEcccccccccccHHHHHHHHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEEccccccEEEEEEccccccccccccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHcccHHccccccccccEEEEEcccccEEEcccEEEEEEEEccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccEEEEEccHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEcccccccccccHHHHHHHHHHHHHHHccccccccEcccccEccc
Coil and Loop (DISEMBL)
mdtecwgdevSKKVLWQYKslpkkgkpqgrEVTVLAAFLISSPSKDLEVVALGTGtkcigrsllsphgdivndSHAEIVARRALLRFFYTEVLNKqkcsngieglrdDVFNNflfelgptgkyrfregWQLHLYISqlpcgdaslsschsaprnffsregnslssvdelngfkdgIYDSLQHIgrvqrkpgrgdttlsvsCSDKIARWNAVGVQGALLSYFLQpvylssitvgrspntsedfpleehlKRSLYdrilplseelsspfqVNKVLHMLE
Flexible Loop (DISEMBL)
mdtecwgdevskkVLWQYkslpkkgkpqgrEVTVLAAFLISSPSKDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRALLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPTGKYRFREGWQLHLYISQLPCGDASLSSCHSAPRNFFSREGNSLSSVDELNGFKDGIYDSLQHigrvqrkpgrgdttLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITVGRSPNTSEDFPLEEHLKRSLYDRILPLseelsspfqvnKVLHMLE
Low Complexity Region (SEG)
MDTECWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISSPSKDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRALLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPTGKYRFREGWQLHLYISQLPCGDASLSSCHSAPRNFFSREGNSLSSVDELNGFKDGIYDSLQHIGRVQRKPGRGDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITVGRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKVLHMLE
Disordered region (IsUnstruct)
****CWGDEVSKKVLWQYKSL********REVTVLAAFLISSPSKDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRALLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPTGKYRFREGWQLHLYISQLPCGDASLSSC********************LNGFKDGIYDSLQHIGRVQ******DTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITVG******************LYDRIL********************
Disordered Region (DISOPRED)
****CWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISSPSKDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRALLRFFYTEVLNKQK*****************FELGPTGKYRFREGWQLHLYISQLPCGDASLSSCHSAPR***********************YDSLQHIGRVQRKPGRGDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITVGRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKVLHML*
Disordered Region (DISEMBL)
********EVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISSPSKDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRALLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPTGKYRFREGWQLHLYISQLPCGDASLSSCHSAPRNFFSREGNSLSSVDELNGFKDGIYDSLQHIGRVQRKPGRGDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITVGRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKVLHMLE
Disordered Region (DISPRO)
MDTECWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISSPSKDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRALLRFFYTEVLNKQKCSNG********FNNFLFELGPTGKYRFREGWQLHLYISQLPCGDASLSS********************ELNG*K***YDSLQHIGRVQRKPGRGDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITVGRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKVLHMLE
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDTECWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISSPSKDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRALLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPTGKYRFREGWQLHLYISQLPCGDASLSSCHSAPRNFFSREGNSLSSVDELNGFKDGIYDSLQHIGRVQRKPGRGDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITVGRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKVLHMLE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	277	2.2.26 [Sep-21-2011]
Q9V3R6	394	tRNA-specific adenosine d	yes	no	0.808	0.568	0.388	5e-34
P51400	711	Double-stranded RNA-speci	yes	no	0.913	0.355	0.327	8e-31
Q91ZS8	711	Double-stranded RNA-speci	yes	no	0.913	0.355	0.324	2e-30
Q9NS39	739	Double-stranded RNA-speci	no	no	0.866	0.324	0.345	8e-30
P78563	741	Double-stranded RNA-speci	no	no	0.902	0.337	0.321	3e-29
P55265	1226	Double-stranded RNA-speci	no	no	0.635	0.143	0.342	2e-26
Q9NII1	676	Double-stranded RNA-speci	no	no	0.862	0.353	0.297	2e-26
Q99MU3	1178	Double-stranded RNA-speci	no	no	0.642	0.151	0.340	3e-26
Q9JI20	745	Double-stranded RNA-speci	no	no	0.870	0.323	0.328	4e-26
P97616	746	Double-stranded RNA-speci	no	no	0.877	0.325	0.334	4e-26

>sp|Q9V3R6|ADAT1_DROME tRNA-specific adenosine deaminase 1 OS=Drosophila melanogaster GN=adat PE=2 SV=1

 Score =  144 bits (364), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 99/255 (38%), Positives = 137/255 (53%), Gaps = 31/255 (12%)

Query: 9   EVSKKVLWQYKSLPKKGKPQGREVTVLAAFL-ISSPSKDLEVVALGTGTKCIGRSLLSPH 67
           E+++  L +++SLPK GKP   + T+LA  +  +  ++  ++V+LG GTKCIG S L P+
Sbjct: 11  EIAELCLKKFESLPKTGKPTANQWTILAGIVEFNRNTEACQLVSLGCGTKCIGESKLCPN 70

Query: 68  GDIVNDSHAEIVARRALLRFFYTEVLNKQKCSNGIEGLRDDVF--NNFLFELGPTGKYRF 125
           G I+NDSHAE++ARR  LRF Y E+  KQ          D +F  N+ L        Y  
Sbjct: 71  GLILNDSHAEVLARRGFLRFLYQEL--KQ----------DRIFHWNSTL------STYDM 112

Query: 126 REGWQLHLYISQLPCGDAS-LSSCHSAPRNFFSREGNSLSSVDELNGFKDGIYDS--LQH 182
            E  + H   +Q PCGDA  L     A R    R       V         + D   LQ 
Sbjct: 113 DEHVEFHFLSTQTPCGDACILEEEQPAARAKRQRLDEDSEMVYTGAKLISDLSDDPMLQT 172

Query: 183 IGRVQRKPGRGDTTLSVSCSDKIARWNAVGVQGALLSYFL-QPVYLSSITVGRSPNTSED 241
            G ++ KPGRG+ TLS+SCSDKIARWN +GVQGALL   + +P+Y SS+      N   D
Sbjct: 173 PGALRTKPGRGERTLSMSCSDKIARWNVIGVQGALLDVLISKPIYFSSL------NFCCD 226

Query: 242 FPLEEHLKRSLYDRI 256
               E L+R+++ R 
Sbjct: 227 DAQLESLERAIFKRF 241

Specifically deaminates adenosine-37 to inosine in tRNA-Ala.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 5EC: .EC: 4EC: .EC: -

>sp|P51400|RED1_RAT Double-stranded RNA-specific editase 1 OS=Rattus norvegicus GN=Adarb1 PE=1 SV=1

 Score =  134 bits (337), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 94/287 (32%), Positives = 146/287 (50%), Gaps = 34/287 (11%)

Query: 4   ECWGDEVSKKVLWQYKSLPKK-GKPQGREVTVLAAFLISSPS--KDLEVVALGTGTKCIG 60
           +   D VS+ VL ++  L      P  R   VL+  ++++ +  KD +V+++ TGTKCI 
Sbjct: 321 QVLADAVSRLVLGKFSDLTDNFSSPHARR-KVLSGVVMTTGTDVKDAKVISVSTGTKCIN 379

Query: 61  RSLLSPHGDIVNDSHAEIVARRALLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPT 120
              +S  G  +ND HAEI++RR+LLRF Y ++   +   N  E  +  +F          
Sbjct: 380 GEYMSDRGLALNDCHAEIISRRSLLRFLYAQL---ELYLNNKEDQKKSIFQK-----SER 431

Query: 121 GKYRFREGWQLHLYISQLPCGDASLSSCHSAPRNFFSREGNSLSSVDELNGFKDGIYDSL 180
           G +R ++  Q HLYIS  PCGDA + S H       + + + L+   + +  +       
Sbjct: 432 GGFRLKDTVQFHLYISTSPCGDARIFSPHEPVLEGMAPDSHQLTEPADRHPNRKARGQLR 491

Query: 181 QHI------------GRVQRKPG--RGDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVY 226
             I              +Q   G  +G+  L++SCSDKIARWN VG+QGALLS F++P+Y
Sbjct: 492 TKIESGEGTIPVRSNASIQTWDGVLQGERLLTMSCSDKIARWNVVGIQGALLSIFVEPIY 551

Query: 227 LSSITVGRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKVL 273
            SSI +G            +HL R++Y RI  + E+L   + +NK L
Sbjct: 552 FSSIILG-------SLYHGDHLSRAMYQRISNI-EDLPPLYTLNKPL 590

Editing of the messenger RNAs for glutamate receptor (GluR) subunits by site-selective adenosine deamination. Edits both the GluR-B Q/R and R/G sites efficiently but converts the adenosine in hotspot1 much less efficiently.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 5

EC: .

EC: -

EC: .

EC: -

>sp|Q91ZS8|RED1_MOUSE Double-stranded RNA-specific editase 1 OS=Mus musculus GN=Adarb1 PE=1 SV=1

 Score =  133 bits (334), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/287 (32%), Positives = 147/287 (51%), Gaps = 34/287 (11%)

Query: 4   ECWGDEVSKKVLWQYKSLPKK-GKPQGREVTVLAAFLISSPS--KDLEVVALGTGTKCIG 60
           +   D VS+ VL ++  L      P  R   VL+  ++++ +  KD +V+++ TGTKCI 
Sbjct: 321 QVLADAVSRLVLGKFSDLTDNFSSPHARR-KVLSGVVMTTGTDVKDAKVISVSTGTKCIN 379

Query: 61  RSLLSPHGDIVNDSHAEIVARRALLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPT 120
              +S  G  +ND HAEI++RR+LLRF Y ++   +   N  E  +  +     F+    
Sbjct: 380 GEYMSDRGLALNDCHAEIISRRSLLRFLYAQL---ELYLNNKEDQKKSI-----FQKSER 431

Query: 121 GKYRFREGWQLHLYISQLPCGDASLSSCHSAPRNFFSREGNSLSSVDELNGFKDGIYDSL 180
           G +R ++  Q HLYIS  PCGDA + S H       + + + L+   + +  +       
Sbjct: 432 GGFRLKDTVQFHLYISTSPCGDARIFSPHEPVLEGMTPDSHQLTEPADRHPNRKARGQLR 491

Query: 181 QHI------------GRVQRKPG--RGDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVY 226
             I              +Q   G  +G+  L++SCSDKIARWN VG+QG+LLS F++P+Y
Sbjct: 492 TKIESGEGTIPVRSNASIQTWDGVLQGERLLTMSCSDKIARWNVVGIQGSLLSIFVEPIY 551

Query: 227 LSSITVGRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKVL 273
            SSI +G            +HL R++Y RI  + E+L   + +NK L
Sbjct: 552 FSSIILG-------SLYHGDHLSRAMYQRISNI-EDLPPLYTLNKPL 590

Editing of the messenger RNAs for glutamate receptor (GluR) subunits by site-selective adenosine deamination. Edits both the GluR-B Q/R and R/G sites efficiently but converts the adenosine in hotspot1 much less efficiently.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 5

EC: .

EC: -

EC: .

EC: -

>sp|Q9NS39|RED2_HUMAN Double-stranded RNA-specific editase B2 OS=Homo sapiens GN=ADARB2 PE=1 SV=1

 Score =  130 bits (328), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 97/281 (34%), Positives = 139/281 (49%), Gaps = 41/281 (14%)

Query: 6   WGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISS--PSKDLEVVALGTGTKCIGRSL 63
           + D +S+ V  +++ +     P       LA  +++    ++  +VVAL +GTKCI    
Sbjct: 361 FADSISQLVTQKFREVTTDLTPMHARHKALAGIVMTKGLDARQAQVVALSSGTKCISGEH 420

Query: 64  LSPHGDIVNDSHAEIVARRALLRFFYTEV---LNKQKCSNGIEGLRDDVFNNFLFELGPT 120
           LS  G +VND HAE+VARRA L F YT++   L+K+         R+D   +    L   
Sbjct: 421 LSDQGLVVNDCHAEVVARRAFLHFLYTQLELHLSKR---------REDSERSIFVRLK-E 470

Query: 121 GKYRFREGWQLHLYISQLPCGDASLSSCHSAPRNFFSREGNSLSSVDELNGFKDGIYDSL 180
           G YR RE    HLY+S  PCGDA L S +    +  S    S   V +  G      +S 
Sbjct: 471 GGYRLRENILFHLYVSTSPCGDARLHSPYEITTDLHS----SKHLVRKFRGHLRTKIESG 526

Query: 181 QHIGRVQRKPGR---------GDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSIT 231
           +    V R P           G+  +++SC+DKIARWN +G+QGALLS+F++PVYL SI 
Sbjct: 527 EGTVPV-RGPSAVQTWDGVLLGEQLITMSCTDKIARWNVLGLQGALLSHFVEPVYLQSIV 585

Query: 232 VGRSPNTSEDFPLEEHLKRSLYDRI-----LPLSEELSSPF 267
           VG   +T        HL R +  R+     LP S   + P 
Sbjct: 586 VGSLHHTG-------HLARVMSHRMEGVGQLPASYRHNRPL 619

Does not act on glutamate receptor or on serotonin receptor subtype 2C. Capable of binding to dsRNA but also to ssRNA.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 5

EC: .

EC: -

EC: .

EC: -

>sp|P78563|RED1_HUMAN Double-stranded RNA-specific editase 1 OS=Homo sapiens GN=ADARB1 PE=1 SV=1

 Score =  129 bits (323), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 103/320 (32%), Positives = 152/320 (47%), Gaps = 70/320 (21%)

Query: 4   ECWGDEVSKKVLWQYKSLPKK-GKPQGREVTVLAAFLISSPS--KDLEVVALGTGTKCIG 60
           +   D VS+ VL ++  L      P  R   VLA  ++++ +  KD +V+++ TGTKCI 
Sbjct: 321 QVLADAVSRLVLGKFGDLTDNFSSPHARR-KVLAGVVMTTGTDVKDAKVISVSTGTKCIN 379

Query: 61  RSLLSPHGDIVNDSHAEIVARRALLRFFYTEV---LNKQKCSNGIEGLRDDVFNNFLFEL 117
              +S  G  +ND HAEI++RR+LLRF YT++   LN           +DD   + +F+ 
Sbjct: 380 GEYMSDRGLALNDCHAEIISRRSLLRFLYTQLELYLNN----------KDDQKRS-IFQK 428

Query: 118 GPTGKYRFREGWQLHLYISQLPCGDASLSSCHSA---PRNFFSREGNSLSSVDELNGFKD 174
              G +R +E  Q HLYIS  PCGDA + S H         +++ G    +   L     
Sbjct: 429 SERGGFRLKENVQFHLYISTSPCGDARIFSPHEPILEGSRSYTQAGVQWCNHGSLQPRPP 488

Query: 175 GIY-----DSLQHIGRVQ---RKPGR------------GDTTLSV--------------- 199
           G+       + Q  G  +   R P R            G+ T+ V               
Sbjct: 489 GLLSDPSTSTFQGAGTTEPADRHPNRKARGQLRTKIESGEGTIPVRSNASIQTWDGVLQG 548

Query: 200 ------SCSDKIARWNAVGVQGALLSYFLQPVYLSSITVGRSPNTSEDFPLEEHLKRSLY 253
                 SCSDKIARWN VG+QG+LLS F++P+Y SSI +G            +HL R++Y
Sbjct: 549 ERLLTMSCSDKIARWNVVGIQGSLLSIFVEPIYFSSIILG-------SLYHGDHLSRAMY 601

Query: 254 DRILPLSEELSSPFQVNKVL 273
            RI  + E+L   + +NK L
Sbjct: 602 QRISNI-EDLPPLYTLNKPL 620

Editing of the messenger RNAs for glutamate receptor (GluR) subunits by site-selective adenosine deamination. Edits both the GluR-B Q/R and R/G sites efficiently but converts the adenosine in hotspot1 much less efficiently.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 5

EC: .

EC: -

EC: .

EC: -

>sp|P55265|DSRAD_HUMAN Double-stranded RNA-specific adenosine deaminase OS=Homo sapiens GN=ADAR PE=1 SV=4

 Score =  119 bits (299), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 115/225 (51%), Gaps = 49/225 (21%)

Query: 34   VLAAFLISSPSKDLEVV-ALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRALLRFFYTEV 92
            +LAA ++   S+D+ VV +LGTG +C+    LS  G+ VND HAEI++RR  +RF Y+E+
Sbjct: 868  ILAAIIMKKDSEDMGVVVSLGTGNRCVKGDSLSLKGETVNDCHAEIISRRGFIRFLYSEL 927

Query: 93   L--NKQKCSNGIEGLRDDVFNNFLFELGPTG-KYRFREGWQLHLYISQLPCGDASLSSCH 149
            +  N Q   + I            FE    G K + ++    HLYIS  PCGD +L    
Sbjct: 928  MKYNSQTAKDSI------------FEPAKGGEKLQIKKTVSFHLYISTAPCGDGALFDKS 975

Query: 150  SAPRNFFSREGNSLSSVDELNGFKDGIYDSLQHIGRVQRKPGRGDTTLSV---------- 199
             + R   S E                ++++ +  G+++ K   G+ T+ V          
Sbjct: 976  CSDRAMESTESRHYP-----------VFENPKQ-GKLRTKVENGEGTIPVESSDIVPTWD 1023

Query: 200  -----------SCSDKIARWNAVGVQGALLSYFLQPVYLSSITVG 233
                       SCSDKI RWN +G+QGALL++FLQP+YL S+T+G
Sbjct: 1024 GIRLGERLRTMSCSDKILRWNVLGLQGALLTHFLQPIYLKSVTLG 1068

Converts multiple adenosines to inosines and creates I/U mismatched base pairs in double-helical RNA substrates without apparent sequence specificity. Has been found to modify more frequently adenosines in AU-rich regions, probably due to the relative ease of melting A/U base pairs as compared to G/C pairs. Functions to modify viral RNA genomes and may be responsible for hypermutation of certain negative-stranded viruses. Edits the messenger RNAs for glutamate receptor (GLUR) subunits by site-selective adenosine deamination. Produces low-level editing at the GLUR-B Q/R site, but edits efficiently at the R/G site and HOTSPOT1. Binds to short interfering RNAs (siRNA) without editing them and suppresses siRNA-mediated RNA interference. Binds to ILF3/NF90 and up-regulates ILF3-mediated gene expression.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: -

>sp|Q9NII1|ADAR_DROME Double-stranded RNA-specific editase Adar OS=Drosophila melanogaster GN=Adar PE=1 SV=2

 Score =  119 bits (298), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 137/286 (47%), Gaps = 47/286 (16%)

Query: 4   ECWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISSPSK--DLEVVALGTGTKCIGR 61
           +   D + + VL ++  + K  +   R   VLA  +++      + +V+++ TGTKC+  
Sbjct: 300 QIHADTIGRLVLEKFMEVIKGQEAYSRR-KVLAGIVMTENMNFCEAKVISVSTGTKCVSG 358

Query: 62  SLLSPHGDIVNDSHAEIVARRALLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPTG 121
             +S +G ++NDSHAEIV+RR LL++ Y ++  +   +   + +       F+       
Sbjct: 359 EHMSVNGAVLNDSHAEIVSRRCLLKYLYAQLDLQCNQATAYQSI-------FVRNTDGQY 411

Query: 122 KYRFREGWQLHLYISQLPCGDASLSSCHSAPR------NFFSR--------EGNSLSSVD 167
            Y+ + G   HLYI+  PCGDA + S H          N  +R         G     V 
Sbjct: 412 PYKLKSGVHFHLYINTAPCGDARIFSPHENDTGVDKHPNRKARGQLRTKIESGEGTIPVK 471

Query: 168 ELNGFK--DGIYDSLQHIGRVQRKPGRGDTTLSVSCSDKIARWNAVGVQGALLSYFLQPV 225
             +G +  DG+               +G   L++SCSDKIARWN VG+QG+LLS  ++PV
Sbjct: 472 SSDGIQTWDGVL--------------QGQRLLTMSCSDKIARWNIVGIQGSLLSSIIEPV 517

Query: 226 YLSSITVGRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNK 271
           YL SI +G            EH+ R++  RI    + L  P+ +NK
Sbjct: 518 YLHSIVLG-------SLLHPEHMYRAVCGRIEKSIQGLPPPYHLNK 556

Has A-to-I RNA editing activity on extended dsRNA: edits RNA-binding protein Rnp4F. A-to-I editing of pre-mRNAs acts predominantly through nervous system targets to affect adult nervous system integrity, function and behavior. Essential for adaptation to environmental stresses, such as oxygen deprivation, and for the prevention of premature neuronal degeneration, through the editing of ion channels as targets.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 5

EC: .

EC: -

EC: .

EC: -

>sp|Q99MU3|DSRAD_MOUSE Double-stranded RNA-specific adenosine deaminase OS=Mus musculus GN=Adar PE=1 SV=2

 Score =  119 bits (297), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 113/223 (50%), Gaps = 45/223 (20%)

Query: 34   VLAAFLISSPSKDLEVV-ALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRALLRFFYTEV 92
            +LAA ++    +D+ VV +LGTG +C+    LS  G+ VND HAEI++RR  +RF Y+E+
Sbjct: 817  ILAAIIMKRDPEDMGVVVSLGTGNRCVKGDSLSLKGETVNDCHAEIISRRGFIRFLYSEL 876

Query: 93   LNKQKCSNGIEGLRDDVFNNFLFELGPTG-KYRFREGWQLHLYISQLPCGDASLSSCHSA 151
            +                  N +FEL   G K + ++    HLYIS  PCGD +L     +
Sbjct: 877  MK----------YNHHTAKNSIFELARGGEKLQIKKTVSFHLYISTAPCGDGALFDKSCS 926

Query: 152  PRNFFSREGNSLSSVDELNGFKDGIYDSLQHIGRVQRKPGRGDTTLSV------------ 199
             R   S E                ++++ +  G+++ K   G+ T+ V            
Sbjct: 927  DRAVESTESRHYP-----------VFENPKQ-GKLRTKVENGEGTIPVESSDIVPTWDGI 974

Query: 200  ---------SCSDKIARWNAVGVQGALLSYFLQPVYLSSITVG 233
                     SCSDKI RWN +G+QGALL++FLQPVYL S+T+G
Sbjct: 975  RLGERLRTMSCSDKILRWNVLGLQGALLTHFLQPVYLKSVTLG 1017

Converts multiple adenosines to inosines and creates I/U mismatched base pairs in double-helical RNA substrates without apparent sequence specificity. Has been found to modify more frequently adenosines in AU-rich regions, probably due to the relative ease of melting A/U base pairs as compared to G/C pairs. Functions to modify viral RNA genomes and may be responsible for hypermutation of certain negative-stranded viruses (By similarity). Binds to short interfering RNAs (siRNA) without editing them and suppresses siRNA-mediated RNA interference. Binds to ILF3/NF90 and up-regulates ILF3-mediated gene expression.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: -

>sp|Q9JI20|RED2_MOUSE Double-stranded RNA-specific editase B2 OS=Mus musculus GN=Adarb2 PE=2 SV=2

 Score =  118 bits (296), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/280 (32%), Positives = 136/280 (48%), Gaps = 39/280 (13%)

Query: 6   WGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISS--PSKDLEVVALGTGTKCIGRSL 63
           + D VS+ V  +++ L             LA  +++    +K  +V+ L +GTKCI    
Sbjct: 367 FADSVSQLVTQKFRELTVGLTSVYARHKTLAGIVMTKGLDTKQAQVIVLSSGTKCISGEH 426

Query: 64  LSPHGDIVNDSHAEIVARRALLRFFYTEV---LNKQKCSNGIEGLRDDVFNNFLFELGPT 120
           +S  G +VND HAEIVARRA L F Y+++   L+K +         +D   +    L   
Sbjct: 427 ISDQGLVVNDCHAEIVARRAFLHFLYSQLELHLSKHQ---------EDPERSIFIRL-KE 476

Query: 121 GKYRFREGWQLHLYISQLPCGDASLSSCHSAPRNFFSREGNSLSSVDELNGFKDGIYDS- 179
           G YR RE    HLY+S  PCGDA ++S    P    +   +S   V +  G      +S 
Sbjct: 477 GGYRLRENILFHLYVSTSPCGDARVNS----PYEITTDLNSSKHIVRKFRGHLRTKIESG 532

Query: 180 -----LQHIGRVQRKPG--RGDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITV 232
                ++    VQ   G   G+  +++SC+DKIA WN +G+QGALL +F++PVYL SI V
Sbjct: 533 EGTVPVRGPSAVQTWDGILLGEQLITMSCTDKIASWNVLGLQGALLCHFIEPVYLHSIIV 592

Query: 233 GRSPNTSEDFPLEEHLKRSLYDRI-----LPLSEELSSPF 267
           G   +T        HL R +  R+     LP S   + P 
Sbjct: 593 GSLHHTG-------HLARVMSHRMEGIGQLPASYRQNRPL 625

Does not act on glutamate receptor or on serotonin receptor subtype 2C. Capable of binding to dsRNA but also to ssRNA.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 5

EC: .

EC: -

EC: .

EC: -

>sp|P97616|RED2_RAT Double-stranded RNA-specific editase B2 OS=Rattus norvegicus GN=Adarb2 PE=2 SV=1

 Score =  118 bits (296), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/278 (33%), Positives = 131/278 (47%), Gaps = 35/278 (12%)

Query: 6   WGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISS--PSKDLEVVALGTGTKCIGRSL 63
           + D VS+ V  +++ L             LA  +++    +K  +V+ L +GTKCI    
Sbjct: 368 FADSVSQLVTQKFRELTVGLTSVYARHKTLAGIVMTKGLDTKQAQVIVLSSGTKCISGEH 427

Query: 64  LSPHGDIVNDSHAEIVARRALLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPTGKY 123
           +S  G +VND HAEIVARRA L F YT++  +   S   E     +F          G Y
Sbjct: 428 ISDQGLVVNDCHAEIVARRAFLHFLYTQL--ELHLSKHQEDPERSIFIRV-----KEGGY 480

Query: 124 RFREGWQLHLYISQLPCGDASLSSCHSAPRNFFSREGNSLSSVDELNGFKDGIYDSLQHI 183
           R RE    HLY+S  PCGDA L+S    P        +S   V +  G      +S +  
Sbjct: 481 RLRENILFHLYVSTSPCGDARLNS----PYEITIDLNSSKHIVRKFRGHLRTKIESGEGT 536

Query: 184 GRVQRKPGR---------GDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITVGR 234
             V R P           G+  +++SC+DKIA WN +G+QGALL +F++PVYL SI VG 
Sbjct: 537 VPV-RGPSAVQTWDGILLGEQLVTMSCTDKIASWNVLGLQGALLCHFIEPVYLHSIIVGS 595

Query: 235 SPNTSEDFPLEEHLKRSLYDRI-----LPLSEELSSPF 267
             +T        HL R +  R+     LP S   + P 
Sbjct: 596 LHHTG-------HLARVMSHRMEGIGQLPASYRQNRPL 626

Does not act on glutamate receptor or on serotonin receptor subtype 2C. Capable of binding to dsRNA but also to ssRNA.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 5

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
225454148	453	PREDICTED: tRNA-specific adenosine deami	0.985	0.602	0.603	2e-90
255541540	443	protein with unknown function [Ricinus c	0.985	0.616	0.615	2e-85
224127616	380	predicted protein [Populus trichocarpa]	0.859	0.626	0.652	2e-84
357497385	413	Double-stranded RNA-specific adenosine d	0.931	0.624	0.580	2e-79
449441482	406	PREDICTED: tRNA-specific adenosine deami	0.935	0.637	0.589	7e-79
356506269	407	PREDICTED: tRNA-specific adenosine deami	0.920	0.626	0.6	4e-78
297842944	399	predicted protein [Arabidopsis lyrata su	0.974	0.676	0.544	9e-75
91805727	356	adenosine-deaminase family/editase famil	0.971	0.755	0.553	7e-74
8671846	435	Contains similarity to RNA adenosine dea	0.971	0.618	0.553	2e-73
186478036	420	Adenosine-deaminase (editase) domain-con	0.971	0.640	0.553	2e-73

>gi|225454148|ref|XP_002273023.1| PREDICTED: tRNA-specific adenosine deaminase 1 [Vitis vinifera] gi|297745247|emb|CBI40327.3| unnamed protein product [Vitis vinifera]

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 187/310 (60%), Positives = 219/310 (70%), Gaps = 37/310 (11%)

Query: 1   MDTE-CWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISSPSKDLEVVALGTGTKCI 59
           +D+E  WG++VS+KVL  YKSLPKKGKPQGREVTVLAAFL SSPS+DLEVVALGTGTKCI
Sbjct: 15  LDSEKTWGEQVSEKVLSVYKSLPKKGKPQGREVTVLAAFLTSSPSQDLEVVALGTGTKCI 74

Query: 60  GRSLLSPHGDIVNDSHAEIVARRALLRFFYTEVLNKQKCSN------GIEGLRDDVFNNF 113
           GRS LSPHGDIVNDSHAE++ARRAL+RFFYTE+ +    SN      G E L  D   N 
Sbjct: 75  GRSRLSPHGDIVNDSHAEVIARRALMRFFYTEIQSLLTISNRHTHNYGSEQLEGDDITNM 134

Query: 114 LFELGPTG----KYRFREGWQLHLYISQLPCGDASLSSCHSAPRNF-------------- 155
           LF L   G    K   R GW+LHLYISQLPCGDASLS    + R+F              
Sbjct: 135 LFHLDSDGPGQRKITMRAGWKLHLYISQLPCGDASLSLPLFSLRSFALINGDLPSSVSEN 194

Query: 156 --FSREGNSLSSVDELNG-FKDGIY---------DSLQHIGRVQRKPGRGDTTLSVSCSD 203
                + +SLS++D+  G F D            +  Q IG +QRKPGRGDTTLSVSCSD
Sbjct: 195 DSMDEQTDSLSNLDDFTGDFLDASMKNNVGSFSGNGSQIIGMIQRKPGRGDTTLSVSCSD 254

Query: 204 KIARWNAVGVQGALLSYFLQPVYLSSITVGRSPNTSEDFPLEEHLKRSLYDRILPLSEEL 263
           KIARWN +GVQGALLSYFLQPVYLSSITVG S  + + FPLE++L+R+LY+R LPLS++L
Sbjct: 255 KIARWNVLGVQGALLSYFLQPVYLSSITVGESHTSPKIFPLEDNLRRALYNRALPLSDKL 314

Query: 264 SSPFQVNKVL 273
            SPFQVN+ L
Sbjct: 315 KSPFQVNQPL 324

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541540|ref|XP_002511834.1| protein with unknown function [Ricinus communis] gi|223549014|gb|EEF50503.1| protein with unknown function [Ricinus communis]

 Score =  321 bits (823), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 173/281 (61%), Positives = 209/281 (74%), Gaps = 8/281 (2%)

Query: 1   MDTECWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISSPSKDLEVVALGTGTKCIG 60
           M++  WG++VS+KV+  Y SL KKGKPQGREVTVL++FLISSPS++LEV++LGTGTKC+G
Sbjct: 1   MESGSWGEKVSEKVISLYNSLQKKGKPQGREVTVLSSFLISSPSQELEVISLGTGTKCLG 60

Query: 61  RSLLSPHGDIVNDSHAEIVARRALLRFFYTEV--LNKQKCSNGIEGLRDDVFNNFLFEL- 117
           RS LSP GDIVNDSHAEI+ARRAL+RFFY+E+  L      +G E  + D   N LF+L 
Sbjct: 61  RSQLSPRGDIVNDSHAEIIARRALMRFFYSEIRRLTDTFNKHGREQFQSDDVGNCLFDLE 120

Query: 118 ---GPTGKYRFREGWQLHLYISQLPCGDASLSSCHSAPRNFFSR--EGNSLSSVDELNGF 172
                  K++ R GWQLHLYISQLPCGDAS+SS     RN F    +G   SS++ L   
Sbjct: 121 QDCSSQLKFKLRAGWQLHLYISQLPCGDASVSSPLLYMRNTFGTLPQGKLNSSMEVLEDS 180

Query: 173 KDGIYDSLQHIGRVQRKPGRGDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITV 232
           +    +  +  G VQRKPGRGD TLSVSCSDKIARWN +GVQGALLSY LQP+YLSSITV
Sbjct: 181 EGNNAEGSEIGGSVQRKPGRGDATLSVSCSDKIARWNVLGVQGALLSYLLQPIYLSSITV 240

Query: 233 GRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKVL 273
           G+SPN+SE F LE  L+ SL DRILPLS +L +PFQVNK L
Sbjct: 241 GQSPNSSEHFQLENCLQLSLCDRILPLSNKLIAPFQVNKPL 281

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127616|ref|XP_002320118.1| predicted protein [Populus trichocarpa] gi|222860891|gb|EEE98433.1| predicted protein [Populus trichocarpa]

 Score =  318 bits (815), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 173/265 (65%), Positives = 205/265 (77%), Gaps = 27/265 (10%)

Query: 18  YKSLPKKGKPQGREVTVLAAFLISSPSKDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAE 77
           YKSLPKKGKPQG EVTVLA+FL+SSPS++LEVVALGTGTKC+GRSLLS  GDI+NDSHAE
Sbjct: 4   YKSLPKKGKPQGCEVTVLASFLLSSPSQELEVVALGTGTKCVGRSLLSNRGDILNDSHAE 63

Query: 78  IVARRALLRFF--YTEVLNKQKCSNGIEGLRDDVFNNFLFELGPTG----KYRFREGWQL 131
           I+ARRAL+RF   + E++ + K ++G         +N++FEL   G    K++ REGWQL
Sbjct: 64  IIARRALIRFITIFGELM-QVKINDG---------SNWIFELEQRGCSEEKFKLREGWQL 113

Query: 132 HLYISQLPCGDASLSSCHSAPRNFFSREGN---SLSSVDELNGFKDGIYDSLQHIGRVQR 188
           HLYISQLPCGDAS+SS  S  RN F+REG+   SLS     NG         Q  G VQR
Sbjct: 114 HLYISQLPCGDASVSSLLSPARNVFTREGDLPPSLSGRLSTNGS--------QISGMVQR 165

Query: 189 KPGRGDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITVGRSPNTSEDFPLEEHL 248
           KPGRGDTTLSVSCSDKIARWN VGVQGALLSYFLQPVYLSS+TVG+S N+ ++F LE+HL
Sbjct: 166 KPGRGDTTLSVSCSDKIARWNVVGVQGALLSYFLQPVYLSSVTVGQSSNSPKNFCLEDHL 225

Query: 249 KRSLYDRILPLSEELSSPFQVNKVL 273
           KR+L+DRILPLS EL SPF ++K L
Sbjct: 226 KRALHDRILPLSNELVSPFHLDKPL 250

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357497385|ref|XP_003618981.1| Double-stranded RNA-specific adenosine deaminase [Medicago truncatula] gi|355493996|gb|AES75199.1| Double-stranded RNA-specific adenosine deaminase [Medicago truncatula]

 Score =  301 bits (772), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 166/286 (58%), Positives = 199/286 (69%), Gaps = 28/286 (9%)

Query: 5   CWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISSPSKDLEVVALGTGTKCIGRSLL 64
           C    VS+KV+  Y SLPKKGKPQGREVTVLAAFL+SSPS +L+VVALGTGTKCIGRS+L
Sbjct: 10  CLDQSVSEKVISLYNSLPKKGKPQGREVTVLAAFLLSSPSNELKVVALGTGTKCIGRSML 69

Query: 65  SPHGDIVNDSHAEIVARRALLRFFYTEVL------NKQKCSNGIEGLRDDVFNNFLFELG 118
            P+GD+V+DSHAE++ARRAL+RFFYT++       +K   SNG +  + D  NN  FE+ 
Sbjct: 70  RPYGDVVHDSHAEVIARRALIRFFYTQIQRLSEPSSKSAPSNGAKRFKVDD-NNLAFEVD 128

Query: 119 P----TGKYRFREGWQLHLYISQLPC-------GDASLSSCHSAPRNFFSREGNSLSSVD 167
                  KY  R GW+LH+YISQLPC       GDASLSS  +   +    E        
Sbjct: 129 EGCLDKRKYTLRSGWKLHMYISQLPCNLIPHFRGDASLSSLVTPLESVPLGE-------- 180

Query: 168 ELNGFKDGIYDSLQHIGRVQRKPGRGDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYL 227
             NG      +S + IG VQRKPGRGDTTLSVSCSDKIARWN VG+QGALLSYFLQPVYL
Sbjct: 181 --NGPHSSSVNSSKQIGMVQRKPGRGDTTLSVSCSDKIARWNVVGIQGALLSYFLQPVYL 238

Query: 228 SSITVGRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKVL 273
           SSITVG    + E+F  E++LKR+LYDRI+ L   L+SPF VN+ L
Sbjct: 239 SSITVGLPHTSPENFQFEDNLKRALYDRIVHLENALTSPFLVNQPL 284

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441482|ref|XP_004138511.1| PREDICTED: tRNA-specific adenosine deaminase 1-like [Cucumis sativus] gi|449518611|ref|XP_004166330.1| PREDICTED: tRNA-specific adenosine deaminase 1-like [Cucumis sativus]

 Score =  299 bits (766), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 165/280 (58%), Positives = 202/280 (72%), Gaps = 21/280 (7%)

Query: 4   ECWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISSPS-KDLEVVALGTGTKCIGRS 62
           E WG+ +S+KVL  Y +LPKKGKPQGREVTVLAAFL+SSPS +DLEVVALGTGTKC+GRS
Sbjct: 9   ERWGETISEKVLSVYNTLPKKGKPQGREVTVLAAFLLSSPSPQDLEVVALGTGTKCLGRS 68

Query: 63  LLSPHGDIVNDSHAEIVARRALLRFFYTEVLNKQKCSNGIE-----GLRDDVFNNFLF-- 115
            LS +GD+VNDSHAE+VARRAL+RFFYT++ ++ + ++  E      +R D  NNFL   
Sbjct: 69  QLSSNGDVVNDSHAEVVARRALMRFFYTQIYHQSQSNSESEHHKTKKMRCDNVNNFLLQI 128

Query: 116 --ELGPTGKYRFREGWQLHLYISQLPCGDASLSSCHSAPRNFFSREGNSLSSVDELNGFK 173
             E G   KY  R+ W+LHLYISQLPCGDAS     SA R+  +R  N    +     F 
Sbjct: 129 DEEAGAERKYVMRKCWKLHLYISQLPCGDAS----SSATRDVQARSDNVAPCL-----FD 179

Query: 174 DGIYDSLQHIGRVQRKPGRGDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITVG 233
            G  D  Q IG VQRKPGRGDTTLSVSCSDKIARWN  G+QGALLSYFLQPV+LSSITVG
Sbjct: 180 KG--DDSQCIGSVQRKPGRGDTTLSVSCSDKIARWNVAGLQGALLSYFLQPVFLSSITVG 237

Query: 234 RSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKVL 273
            SP+ +++  +E  LK ++ DR+   S EL +P +VN+ L
Sbjct: 238 LSPHNAKNCIVEGLLKSAVCDRVQLFSNELMNPLKVNQPL 277

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506269|ref|XP_003521909.1| PREDICTED: tRNA-specific adenosine deaminase 1-like [Glycine max]

 Score =  297 bits (760), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 165/275 (60%), Positives = 199/275 (72%), Gaps = 20/275 (7%)

Query: 6   WGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISSPSKDLEVVALGTGTKCIGRSLLS 65
           WG  VS+KVL  Y SLPKKGKPQGREVTVLA+FL+SSPS DL+VVA+GTGTKC+GRSLL 
Sbjct: 13  WGKRVSEKVLSFYTSLPKKGKPQGREVTVLASFLLSSPSNDLKVVAMGTGTKCLGRSLLR 72

Query: 66  PHGDIVNDSHAEIVARRALLRFFYTEVLN----KQKCSNGIEGLRDDVFNNFLFELGP-- 119
             GD+V+DSHAE++ARRAL+RFFYT++ +    K   SNG +  + D  N+  FEL P  
Sbjct: 73  TCGDVVHDSHAEVIARRALIRFFYTQIQHLTGSKHAPSNGGKRFKLDDGNS-PFELDPGC 131

Query: 120 --TGKYRFREGWQLHLYISQLPCGDASLSSCHSAPRNFFSREGNSLSSVDELNGFKDGIY 177
              GKY  ++ W+LH+YISQLPCGDASLS   S        E +S S +           
Sbjct: 132 LNKGKYSLKKDWKLHMYISQLPCGDASLSWQVSPLETAVLGESDSTSPLG---------- 181

Query: 178 DSLQHIGRVQRKPGRGDTTLSVSCSDKIARWNAVGVQG-ALLSYFLQPVYLSSITVGRSP 236
           + L+  G VQRKP RGDTTLSVSCSDKIARW+  GVQG ALLSYFLQPVYLSSITVG   
Sbjct: 182 NGLKQKGMVQRKPSRGDTTLSVSCSDKIARWSVAGVQGVALLSYFLQPVYLSSITVGLPL 241

Query: 237 NTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNK 271
           +  E+F LE+ LKR+LY+R+LPLS EL+SPF VN+
Sbjct: 242 DILENFRLEDSLKRALYERMLPLSNELTSPFLVNQ 276

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842944|ref|XP_002889353.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297335195|gb|EFH65612.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  286 bits (731), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 158/290 (54%), Positives = 198/290 (68%), Gaps = 20/290 (6%)

Query: 4   ECWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISSPSKDLEVVALGTGTKCIGRSL 63
           E WG+ VS+KV+  Y SLPKKGKPQGREVTVL+AFL+SSPS+DL+V+ALGTGTKC+ RSL
Sbjct: 3   EDWGERVSEKVVSAYMSLPKKGKPQGREVTVLSAFLVSSPSQDLKVIALGTGTKCVSRSL 62

Query: 64  LSPHGDIVNDSHAEIVARRALLRFFYTEVLNKQKCSNG---IEGLRDDVFNNFLFELGPT 120
           LSP GDIVNDSHAE+VARRAL+RFFY+E+   Q  S+     +  R D   + + E   +
Sbjct: 63  LSPRGDIVNDSHAEVVARRALIRFFYSEIQGMQLTSDKSSEAKRQRLDCETSSVLESADS 122

Query: 121 G-----KYRFREGWQLHLYISQLPCGDASLSSCHSAPRNFFSRE------------GNSL 163
                 KY+ + G  LH+YISQLPCG AS SS   A +   S +            G+S 
Sbjct: 123 SCPGEVKYKLKSGCHLHMYISQLPCGYASTSSPFYALKKIPSTQVDDSFLVQASDIGSSR 182

Query: 164 SSVDELNGFKDGIYDSLQHIGRVQRKPGRGDTTLSVSCSDKIARWNAVGVQGALLSYFLQ 223
            S     G      +  Q    VQRKPGRG+TTLSVSCSDKIARWN +GVQGALL   LQ
Sbjct: 183 HSDVPQIGSNSHTGNGSQVADMVQRKPGRGETTLSVSCSDKIARWNVLGVQGALLCQVLQ 242

Query: 224 PVYLSSITVGRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKVL 273
           PVY+S+ITVG+S +   +F L +HL+RSLY+RILPLS++L + F++NK L
Sbjct: 243 PVYISTITVGQSLHIPGNFSLADHLRRSLYERILPLSDDLLTSFRLNKPL 292

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|91805727|gb|ABE65592.1| adenosine-deaminase family/editase family protein [Arabidopsis thaliana]

 Score =  283 bits (723), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 161/291 (55%), Positives = 200/291 (68%), Gaps = 22/291 (7%)

Query: 4   ECWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISSPSKDLEVVALGTGTKCIGRSL 63
           E WG  VS+KV+  Y SLPKKGKPQGREVTVL+AFL+SSPS+D +V+ALGTGTKC+  SL
Sbjct: 3   EDWGKTVSEKVISAYMSLPKKGKPQGREVTVLSAFLVSSPSQDPKVIALGTGTKCVSGSL 62

Query: 64  LSPHGDIVNDSHAEIVARRALLRFFYTEVLNKQKC---SNGIEGLRDDVFNNFLFELGPT 120
           LSP GDIVNDSHAE+VARRAL+RFFY+E+   Q     SN  +  R D   + + E   +
Sbjct: 63  LSPRGDIVNDSHAEVVARRALIRFFYSEIQRMQLTSGKSNEAKRQRIDSETSSILESADS 122

Query: 121 G-----KYRFREGWQLHLYISQLPCGDASLSSCHSAPRNFFSRE-GNSL----------- 163
                 KY+ + G  LHLYISQLPCG AS SS   A +   S +  +SL           
Sbjct: 123 SCPGEVKYKLKSGCLLHLYISQLPCGYASTSSPLYALKKIPSTQVDDSLLVQASDICSSR 182

Query: 164 -SSVDELNGFKDGIYDSLQHIGRVQRKPGRGDTTLSVSCSDKIARWNAVGVQGALLSYFL 222
            S V E+ G      +  Q    VQRKPGRG+TTLSVSCSDKIARWN +GVQGALL   L
Sbjct: 183 HSDVPEI-GSNSNKGNGSQVADMVQRKPGRGETTLSVSCSDKIARWNVLGVQGALLYQVL 241

Query: 223 QPVYLSSITVGRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKVL 273
           QPVY+S+ITVG+S ++ ++F L +HL+RSLY+RILPLS+EL + F++NK L
Sbjct: 242 QPVYISTITVGQSLHSPDNFSLADHLRRSLYERILPLSDELLTSFRLNKPL 292

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8671846|gb|AAF78409.1|AC009273_15 Contains similarity to RNA adenosine deaminase gene, exon 15 from Homo sapiens gb|U75503. It contains the adenosine-deaminase (editase) domain PF|02137 [Arabidopsis thaliana]

 Score =  281 bits (720), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 161/291 (55%), Positives = 200/291 (68%), Gaps = 22/291 (7%)

Query: 4   ECWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISSPSKDLEVVALGTGTKCIGRSL 63
           E WG  VS+KV+  Y SLPKKGKPQGREVTVL+AFL+SSPS+D +V+ALGTGTKC+  SL
Sbjct: 3   EDWGKTVSEKVISAYMSLPKKGKPQGREVTVLSAFLVSSPSQDPKVIALGTGTKCVSGSL 62

Query: 64  LSPHGDIVNDSHAEIVARRALLRFFYTEVLNKQKC---SNGIEGLRDDVFNNFLFELGPT 120
           LSP GDIVNDSHAE+VARRAL+RFFY+E+   Q     SN  +  R D   + + E   +
Sbjct: 63  LSPRGDIVNDSHAEVVARRALIRFFYSEIQRMQLTSGKSNEAKRQRIDSETSSILESADS 122

Query: 121 G-----KYRFREGWQLHLYISQLPCGDASLSSCHSAPRNFFSRE-GNSL----------- 163
                 KY+ + G  LHLYISQLPCG AS SS   A +   S +  +SL           
Sbjct: 123 SCPGEVKYKLKSGCLLHLYISQLPCGYASTSSPLYALKKIPSTQVDDSLLVQASDICSSR 182

Query: 164 -SSVDELNGFKDGIYDSLQHIGRVQRKPGRGDTTLSVSCSDKIARWNAVGVQGALLSYFL 222
            S V E+ G      +  Q    VQRKPGRG+TTLSVSCSDKIARWN +GVQGALL   L
Sbjct: 183 HSDVPEI-GSNSNKGNGSQVADMVQRKPGRGETTLSVSCSDKIARWNVLGVQGALLYQVL 241

Query: 223 QPVYLSSITVGRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKVL 273
           QPVY+S+ITVG+S ++ ++F L +HL+RSLY+RILPLS+EL + F++NK L
Sbjct: 242 QPVYISTITVGQSLHSPDNFSLADHLRRSLYERILPLSDELLTSFRLNKPL 292

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186478036|ref|NP_171681.3| Adenosine-deaminase (editase) domain-containing protein [Arabidopsis thaliana] gi|332189211|gb|AEE27332.1| Adenosine-deaminase (editase) domain-containing protein [Arabidopsis thaliana]

 Score =  281 bits (720), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 161/291 (55%), Positives = 200/291 (68%), Gaps = 22/291 (7%)

Query: 4   ECWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISSPSKDLEVVALGTGTKCIGRSL 63
           E WG  VS+KV+  Y SLPKKGKPQGREVTVL+AFL+SSPS+D +V+ALGTGTKC+  SL
Sbjct: 3   EDWGKTVSEKVISAYMSLPKKGKPQGREVTVLSAFLVSSPSQDPKVIALGTGTKCVSGSL 62

Query: 64  LSPHGDIVNDSHAEIVARRALLRFFYTEVLNKQKC---SNGIEGLRDDVFNNFLFELGPT 120
           LSP GDIVNDSHAE+VARRAL+RFFY+E+   Q     SN  +  R D   + + E   +
Sbjct: 63  LSPRGDIVNDSHAEVVARRALIRFFYSEIQRMQLTSGKSNEAKRQRIDSETSSILESADS 122

Query: 121 G-----KYRFREGWQLHLYISQLPCGDASLSSCHSAPRNFFSRE-GNSL----------- 163
                 KY+ + G  LHLYISQLPCG AS SS   A +   S +  +SL           
Sbjct: 123 SCPGEVKYKLKSGCLLHLYISQLPCGYASTSSPLYALKKIPSTQVDDSLLVQASDICSSR 182

Query: 164 -SSVDELNGFKDGIYDSLQHIGRVQRKPGRGDTTLSVSCSDKIARWNAVGVQGALLSYFL 222
            S V E+ G      +  Q    VQRKPGRG+TTLSVSCSDKIARWN +GVQGALL   L
Sbjct: 183 HSDVPEI-GSNSNKGNGSQVADMVQRKPGRGETTLSVSCSDKIARWNVLGVQGALLYQVL 241

Query: 223 QPVYLSSITVGRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKVL 273
           QPVY+S+ITVG+S ++ ++F L +HL+RSLY+RILPLS+EL + F++NK L
Sbjct: 242 QPVYISTITVGQSLHSPDNFSLADHLRRSLYERILPLSDELLTSFRLNKPL 292

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
TAIR|locus:2198185	420	TAD1 "ortholog of yeast Tad1"	0.519	0.342	0.598	9.5e-78
ZFIN|ZDB-GENE-070410-64	466	adat1 "adenosine deaminase, tR	0.469	0.278	0.435	2.2e-37
DICTYBASE|DDB_G0278943	545	DDB_G0278943 "adenosine deamin	0.509	0.258	0.385	2.5e-36
UNIPROTKB|D4A9N0	415	Adat1 "Protein Adat1" [Rattus	0.469	0.313	0.361	2.2e-33
UNIPROTKB|P78563	741	ADARB1 "Double-stranded RNA-sp	0.480	0.179	0.386	5e-33
RGD|1591020	498	Adat1 "adenosine deaminase, tR	0.469	0.261	0.361	9e-33
UNIPROTKB|Q28FE8	472	adat1 "tRNA-specific adenosine	0.299	0.175	0.483	1.1e-32
UNIPROTKB|F1N0T4	721	ADARB1 "Uncharacterized protei	0.891	0.342	0.371	1.3e-32
ZFIN|ZDB-GENE-030219-15	728	adarb1b "adenosine deaminase,	0.902	0.343	0.351	2.9e-32
FB|FBgn0028658	394	adat "adat" [Drosophila melano	0.732	0.515	0.391	3.7e-32

TAIR|locus:2198185 TAD1 "ortholog of yeast Tad1" [Arabidopsis thaliana (taxid:3702)]

 Score = 426 (155.0 bits), Expect = 9.5e-78, Sum P(2) = 9.5e-78
 Identities = 91/152 (59%), Positives = 109/152 (71%)

Query:     4 ECWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISSPSKDLEVVALGTGTKCIGRSL 63
             E WG  VS+KV+  Y SLPKKGKPQGREVTVL+AFL+SSPS+D +V+ALGTGTKC+  SL
Sbjct:     3 EDWGKTVSEKVISAYMSLPKKGKPQGREVTVLSAFLVSSPSQDPKVIALGTGTKCVSGSL 62

Query:    64 LSPHGDIVNDSHAEIVARRALLRFFYTEVLNKQKCS---NGIEGLRDDVFNNFLFELGPT 120
             LSP GDIVNDSHAE+VARRAL+RFFY+E+   Q  S   N  +  R D   + + E   +
Sbjct:    63 LSPRGDIVNDSHAEVVARRALIRFFYSEIQRMQLTSGKSNEAKRQRIDSETSSILESADS 122

Query:   121 G-----KYRFREGWQLHLYISQLPCGDASLSS 147
                   KY+ + G  LHLYISQLPCG AS SS
Sbjct:   123 SCPGEVKYKLKSGCLLHLYISQLPCGYASTSS 154

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0004000 "adenosine deaminase activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006396 "RNA processing" evidence=IEA;ISS

ZFIN|ZDB-GENE-070410-64 adat1 "adenosine deaminase, tRNA-specific 1" [Danio rerio (taxid:7955)]

 Score = 254 (94.5 bits), Expect = 2.2e-37, Sum P(2) = 2.2e-37
 Identities = 64/147 (43%), Positives = 87/147 (59%)

Query:     6 WG-DEVSKKVLWQYKSLPKKGKPQ-GREVTVLAAFL-ISS-PSKDL---EVVALGTGTKC 58
             W  DE++      +  LPK+GKP+ GRE T+LAA + I+  P +     +VV+LGTGTKC
Sbjct:     2 WSPDEIASLCYNHFNKLPKRGKPESGREWTLLAAVIQITDCPEQKTVQKQVVSLGTGTKC 61

Query:    59 IGRSLLSPHGDIVNDSHAEIVARRALLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELG 118
             IGRS +S  GD++NDSHAE++ARR  +R+  TE L K      + G   DVF        
Sbjct:    62 IGRSAMSMKGDVLNDSHAEVIARRGSVRYL-TEQLLK-----AVRGQSSDVF----CAGS 111

Query:   119 PTGKYRFREGWQLHLYISQLPCGDASL 145
               GK+R + G     + SQ PCGDAS+
Sbjct:   112 EKGKWRLKAGVSFLFFTSQTPCGDASI 138

GO:0004000 "adenosine deaminase activity" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0278943 DDB_G0278943 "adenosine deaminase acting on tRNA 1" [Dictyostelium discoideum (taxid:44689)]

 Score = 238 (88.8 bits), Expect = 2.5e-36, Sum P(2) = 2.5e-36
 Identities = 59/153 (38%), Positives = 87/153 (56%)

Query:    19 KSLPKKGKPQGREVTVLAAFLI---SSPSKDL-EVVALGTGTKCIGRSLLSPHGDIVNDS 74
             K L KKGKP   E TVLA  ++   ++ S ++ +V++LGTG +C+G+S LS  GD++NDS
Sbjct:    23 KKLIKKGKPISGEWTVLATLVLVVENTSSYEIKQVLSLGTGNRCLGKSSLSNQGDVLNDS 82

Query:    75 HAEIVARRALLRFFYTEVLN--KQKCSNGIE---GLRDDVFNNFLFEL-GPTGKYRFREG 128
             HAEI+ +R+  +F Y E+LN  + K  N I       D   NN   +  G       ++G
Sbjct:    83 HAEIICKRSFQKFCYNEILNLLQSKYYNSILFNIEYHDSNNNNKDNDNNGSLPTISIKKG 142

Query:   129 WQLHLYISQLPCGDASLSSC--HSAPRNFFSRE 159
               LH Y++Q PCGD S+      + P NF  +E
Sbjct:   143 HSLHFYVNQTPCGDCSIFPFKKETQPENFIEKE 175

GO:0006396 "RNA processing" evidence=IEA

GO:0004000 "adenosine deaminase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0005575 "cellular_component" evidence=ND

GO:0008251 "tRNA-specific adenosine deaminase activity" evidence=ISS

GO:0008033 "tRNA processing" evidence=IEA;ISS

GO:0006400 "tRNA modification" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|D4A9N0 Adat1 "Protein Adat1" [Rattus norvegicus (taxid:10116)]

 Score = 203 (76.5 bits), Expect = 2.2e-33, Sum P(2) = 2.2e-33
 Identities = 56/155 (36%), Positives = 84/155 (54%)

Query:     6 W-GDEVSKKVLWQYKSLPKKGKPQ-GREVTVLAAFL---------ISSPSKDL----EVV 50
             W  DE+++     Y  LPK+GKP+  RE T+LAA +           +P K +    EVV
Sbjct:     2 WTADEIAQLCYAHYIKLPKQGKPEPNREWTLLAAVVKIQTPANQACDTPDKQIQVTKEVV 61

Query:    51 ALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRALLRFFYTEVLNKQKCSNGIEGLRDDVF 110
             ++GTGTKCIG+S +   GDI+NDSHAE++ARR+  R+    +L++   +  ++   D +F
Sbjct:    62 SMGTGTKCIGQSKMRESGDILNDSHAEVIARRSFQRY----ILHQLHVAAVLK--EDSIF 115

Query:   111 NNFLFELGPTGKYRFREGWQLHLYISQLPCGDASL 145
                       G +R R       + S  PCGDAS+
Sbjct:   116 ----LPGTQRGLWRLRPDLSFVFFSSHTPCGDASI 146

GO:0003723 "RNA binding" evidence=IEA

GO:0004000 "adenosine deaminase activity" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

UNIPROTKB|P78563 ADARB1 "Double-stranded RNA-specific editase 1" [Homo sapiens (taxid:9606)]

 Score = 225 (84.3 bits), Expect = 5.0e-33, Sum P(2) = 5.0e-33
 Identities = 56/145 (38%), Positives = 84/145 (57%)

Query:     8 DEVSKKVLWQYKSLPKK-GKPQGREVTVLAAFLISSPS--KDLEVVALGTGTKCIGRSLL 64
             D VS+ VL ++  L      P  R   VLA  ++++ +  KD +V+++ TGTKCI    +
Sbjct:   325 DAVSRLVLGKFGDLTDNFSSPHARR-KVLAGVVMTTGTDVKDAKVISVSTGTKCINGEYM 383

Query:    65 SPHGDIVNDSHAEIVARRALLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPTGKYR 124
             S  G  +ND HAEI++RR+LLRF YT++  +   +N     +DD   + +F+    G +R
Sbjct:   384 SDRGLALNDCHAEIISRRSLLRFLYTQL--ELYLNN-----KDDQKRS-IFQKSERGGFR 435

Query:   125 FREGWQLHLYISQLPCGDASLSSCH 149
              +E  Q HLYIS  PCGDA + S H
Sbjct:   436 LKENVQFHLYISTSPCGDARIFSPH 460

GO:0003725 "double-stranded RNA binding" evidence=IEA;IDA

GO:0004000 "adenosine deaminase activity" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0045087 "innate immune response" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051607 "defense response to virus" evidence=IEA

GO:0045070 "positive regulation of viral genome replication" evidence=IMP

GO:0005730 "nucleolus" evidence=IDA

GO:0044387 "negative regulation of protein kinase activity by regulation of protein phosphorylation" evidence=IDA

GO:0006382 "adenosine to inosine editing" evidence=IDA;TAS

GO:0030336 "negative regulation of cell migration" evidence=IDA

GO:0008285 "negative regulation of cell proliferation" evidence=IDA

GO:0051726 "regulation of cell cycle" evidence=IDA

GO:0003726 "double-stranded RNA adenosine deaminase activity" evidence=IDA

GO:0006396 "RNA processing" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0016553 "base conversion or substitution editing" evidence=IC

GO:0003723 "RNA binding" evidence=IDA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016556 "mRNA modification" evidence=TAS

GO:0003729 "mRNA binding" evidence=TAS

RGD|1591020 Adat1 "adenosine deaminase, tRNA-specific 1" [Rattus norvegicus (taxid:10116)]

 Score = 203 (76.5 bits), Expect = 9.0e-33, Sum P(2) = 9.0e-33
 Identities = 56/155 (36%), Positives = 84/155 (54%)

Query:     6 W-GDEVSKKVLWQYKSLPKKGKPQ-GREVTVLAAFL---------ISSPSKDL----EVV 50
             W  DE+++     Y  LPK+GKP+  RE T+LAA +           +P K +    EVV
Sbjct:     2 WTADEIAQLCYAHYIKLPKQGKPEPNREWTLLAAVVKIQTPANQACDTPDKQIQVTKEVV 61

Query:    51 ALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRALLRFFYTEVLNKQKCSNGIEGLRDDVF 110
             ++GTGTKCIG+S +   GDI+NDSHAE++ARR+  R+    +L++   +  ++   D +F
Sbjct:    62 SMGTGTKCIGQSKMRESGDILNDSHAEVIARRSFQRY----ILHQLHVAAVLK--EDSIF 115

Query:   111 NNFLFELGPTGKYRFREGWQLHLYISQLPCGDASL 145
                       G +R R       + S  PCGDAS+
Sbjct:   116 ----LPGTQRGLWRLRPDLSFVFFSSHTPCGDASI 146

GO:0003723 "RNA binding" evidence=IEA;ISO

GO:0008033 "tRNA processing" evidence=IEA;ISO

GO:0008251 "tRNA-specific adenosine deaminase activity" evidence=IEA;ISO

UNIPROTKB|Q28FE8 adat1 "tRNA-specific adenosine deaminase 1" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 203 (76.5 bits), Expect = 1.1e-32, Sum P(2) = 1.1e-32
 Identities = 44/91 (48%), Positives = 65/91 (71%)

Query:   183 IGRVQRKPGRGDTTLSVSCSDKIARWNAVGVQGALLSYFLQ-PVYLSSITVGRSPNTSED 241
             +G ++ KPGRGD T+S+SCSDK+ARWN +G QGALL +FLQ P+YLS++ VG+ P  S+D
Sbjct:   253 VGVLRIKPGRGDRTMSMSCSDKMARWNVLGCQGALLMHFLQQPIYLSAVVVGKCP-FSQD 311

Query:   242 FPLEEHLKRSLYDRILPLSEELSSPFQVNKV 272
                   ++R+LY+R   +   L   F++N+V
Sbjct:   312 A-----MERALYNRCHKVLS-LPCAFRLNRV 336

GO:0003723 "RNA binding" evidence=ISS

GO:0008033 "tRNA processing" evidence=ISS

GO:0008251 "tRNA-specific adenosine deaminase activity" evidence=ISS

UNIPROTKB|F1N0T4 ADARB1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 364 (133.2 bits), Expect = 1.3e-32, P = 1.3e-32
 Identities = 103/277 (37%), Positives = 155/277 (55%)

Query:     8 DEVSKKVLWQYKSLPKK-GKPQGREVTVLAAFLISSPS--KDLEVVALGTGTKCIGRSLL 64
             D V++ VL ++  L      P  R   VLA  ++++ +  KD +V+++ TGTKCI    +
Sbjct:   343 DAVARLVLDKFGDLTDSFASPHARR-KVLAGIVMTTGTDVKDAKVISISTGTKCINGEYM 401

Query:    65 SPHGDIVNDSHAEIVARRALLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPTGKYR 124
             S  G  +ND HAEI+ARR+LLRF YT++    K SN     +DD   + +FE    G ++
Sbjct:   402 SDRGLALNDCHAEIIARRSLLRFLYTQLEIYLK-SNS----KDDQKRS-IFEKSERGGFK 455

Query:   125 FREGWQLHLYISQLPCGDASLSSCHS------APRNFFSREGNSLSSVDELNGFKDGIYD 178
              +E  Q HLYIS  PCGDA + S H       A R+   +    L +  E +G  +G   
Sbjct:   456 LKENVQFHLYISTSPCGDARIFSPHEPILEEPADRHPNRKARGQLRTKIE-SG--EGTIP 512

Query:   179 SLQHIGRVQRKPG--RGDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITVGRSP 236
              ++    VQ   G  +G+  L++SCSDK+ARWN VG+QG+LLS F++P+Y SSI +G   
Sbjct:   513 -VRSNASVQTWDGVLQGERLLTMSCSDKMARWNVVGIQGSLLSIFVEPIYFSSIILGSLY 571

Query:   237 NTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKVL 273
             +        +HL R++Y RI  + E+L   + +NK L
Sbjct:   572 HG-------DHLSRAMYQRISNI-EDLPPLYTLNKPL 600

GO:0051726 "regulation of cell cycle" evidence=IEA

GO:0045070 "positive regulation of viral genome replication" evidence=IEA

GO:0044387 "negative regulation of protein kinase activity by regulation of protein phosphorylation" evidence=IEA

GO:0030336 "negative regulation of cell migration" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

GO:0006382 "adenosine to inosine editing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003726 "double-stranded RNA adenosine deaminase activity" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA

ZFIN|ZDB-GENE-030219-15 adarb1b "adenosine deaminase, RNA-specific, B1b" [Danio rerio (taxid:7955)]

 Score = 361 (132.1 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 96/273 (35%), Positives = 147/273 (53%)

Query:     8 DEVSKKVLWQYKSLPKK-GKPQGREVTVLAAFLISSPS--KDLEVVALGTGTKCIGRSLL 64
             D VS+ V+ ++  L      P  R   VLA  ++++ +  KD +V+ + TGTKCI    +
Sbjct:   352 DAVSRLVVDKFSELTDNFTSPHARR-KVLAGVVMTTGTDVKDAQVICVSTGTKCINGEYM 410

Query:    65 SPHGDIVNDSHAEIVARRALLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPTGKYR 124
             S  G  +ND HAEI+ARR+L+R+ Y ++  +   SN  E  +  +F     +    G YR
Sbjct:   411 SDRGLALNDCHAEIIARRSLIRYLYMQL--EHFLSNNKEEHQKSIF----MQCEKRG-YR 463

Query:   125 FREGWQLHLYISQLPCGDASLSSCHSAP-RNFFSREGNSLSSVDELNGFKDGIYD-SLQH 182
              ++  Q HLYIS  PCGDA + S H A   +   R  N  +        + G     ++ 
Sbjct:   464 LKDSVQFHLYISTSPCGDARIFSPHEAGVEDQGDRHPNRKARGQLRTKIESGEGTIPVRS 523

Query:   183 IGRVQRKPG--RGDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITVGRSPNTSE 240
                +Q   G  +G+  L++SCSDKIARWN VG+QG+L+SYF +P+Y SSI +G   +   
Sbjct:   524 SNTIQTWDGVLQGERLLTMSCSDKIARWNVVGIQGSLMSYFSEPIYFSSIILGSLYHA-- 581

Query:   241 DFPLEEHLKRSLYDRILPLSEELSSPFQVNKVL 273
                  +HL R++Y RI  + E+L   F +N+ L
Sbjct:   582 -----DHLSRAMYQRIADI-EDLPQQFSLNRPL 608

GO:0003725 "double-stranded RNA binding" evidence=IEA

GO:0004000 "adenosine deaminase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

FB|FBgn0028658 adat "adat" [Drosophila melanogaster (taxid:7227)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 90/230 (39%), Positives = 129/230 (56%)

Query:     9 EVSKKVLWQYKSLPKKGKPQGREVTVLAAFL-ISSPSKDLEVVALGTGTKCIGRSLLSPH 67
             E+++  L +++SLPK GKP   + T+LA  +  +  ++  ++V+LG GTKCIG S L P+
Sbjct:    11 EIAELCLKKFESLPKTGKPTANQWTILAGIVEFNRNTEACQLVSLGCGTKCIGESKLCPN 70

Query:    68 GDIVNDSHAEIVARRALLRFFYTEVLNKQKCSNGIEGLRDDVFN-NFLFELGPTGKYRFR 126
             G I+NDSHAE++ARR  LRF Y E+  KQ          D +F+ N          Y   
Sbjct:    71 GLILNDSHAEVLARRGFLRFLYQEL--KQ----------DRIFHWN-----STLSTYDMD 113

Query:   127 EGWQLHLYISQLPCGDASL----SSCHSAPRNFFSREGNSLSSVDEL-NGFKDGIYDSLQ 181
             E  + H   +Q PCGDA +         A R     +   + +  +L +   D     LQ
Sbjct:   114 EHVEFHFLSTQTPCGDACILEEEQPAARAKRQRLDEDSEMVYTGAKLISDLSDD--PMLQ 171

Query:   182 HIGRVQRKPGRGDTTLSVSCSDKIARWNAVGVQGALLSYFL-QPVYLSSI 230
               G ++ KPGRG+ TLS+SCSDKIARWN +GVQGALL   + +P+Y SS+
Sbjct:   172 TPGALRTKPGRGERTLSMSCSDKIARWNVIGVQGALLDVLISKPIYFSSL 221

GO:0008251 "tRNA-specific adenosine deaminase activity" evidence=ISS;IDA;NAS

GO:0006400 "tRNA modification" evidence=IDA

GO:0005575 "cellular_component" evidence=ND

GO:0003723 "RNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.5.4	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00026806001 SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (453 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	277
smart00552	374	smart00552, ADEAMc, tRNA-specific and double-stran	3e-86
pfam02137	329	pfam02137, A_deamin, Adenosine-deaminase (editase)	4e-76

>gnl|CDD|214718 smart00552, ADEAMc, tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase)

 Score =  261 bits (670), Expect = 3e-86
 Identities = 117/283 (41%), Positives = 159/283 (56%), Gaps = 41/283 (14%)

Query: 6   WGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISSPSKDL-EVVALGTGTKCIGRSLL 64
            GDE+S+ VL ++ SLPK GKP  RE T+LA  ++++   +  +VV+LGTGTKCI    L
Sbjct: 2   TGDEISQLVLEKFGSLPKIGKPGLREWTILAGVVMTNGMDNEKQVVSLGTGTKCISGEKL 61

Query: 65  SPHGDIVNDSHAEIVARRALLRFFYTEVLN-KQKCSNGIEGLRDDVFNNFLFELGPTG-K 122
           SP+G ++ND HAEI+ARR  LRF Y+E+        + I            FE    G K
Sbjct: 62  SPNGLVLNDCHAEILARRGFLRFLYSELQLFNSSSEDSI------------FEKNKEGGK 109

Query: 123 YRFREGWQLHLYISQLPCGDASLSSCHSAPRNFFSREGNSLSSVDELNGFKDGIYDSLQH 182
           Y+ +     HLYIS LPCGDAS+ S     +N  S+              K     +   
Sbjct: 110 YKLKSNVLFHLYISTLPCGDASIFSPLEPLKNDDSKH-------PVRKNIKRSKLRTKIE 162

Query: 183 IGR----------VQRKPGR--GDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSI 230
           IG           VQ   G   G+  LS+SCSDKIARWN +GVQGALLS+F++P+YLSSI
Sbjct: 163 IGEGTVPVRSSDIVQTWDGIGDGERLLSMSCSDKIARWNVLGVQGALLSHFIEPIYLSSI 222

Query: 231 TVGRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKVL 273
            +G+S  ++      EHL+R+LY R+ PL     +PF+VN+ L
Sbjct: 223 VLGKSLYSA------EHLERALYGRLDPLDGLP-TPFRVNRPL 258

Length = 374

>gnl|CDD|216895 pfam02137, A_deamin, Adenosine-deaminase (editase) domain

 Score =  234 bits (598), Expect = 4e-76
 Identities = 96/232 (41%), Positives = 126/232 (54%), Gaps = 26/232 (11%)

Query: 51  ALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRALLRFFYTEVLNKQKCSNGIEGLRDDVF 110
           +LGTGTKC+G   LS  GDI++D HAEI+ARR  LRF Y ++L         EG    +F
Sbjct: 1   SLGTGTKCLGGEHLSNDGDILHDCHAEILARRGFLRFLYEQLLLLNS-----EGKESSIF 55

Query: 111 NNFLFELGPTGKYRFREGWQLHLYISQLPCGDASLSSCHSA-------PRNFFSREGNSL 163
                     GK+R + G  LHLYIS  PCGDAS+ S           P +  +R+    
Sbjct: 56  E----RGIEEGKFRLKPGVSLHLYISTAPCGDASIFSPAEGLLDSELEPDSHPNRQARGQ 111

Query: 164 SSVDELNGFKDGIYDSLQHIGRVQRKPGR--GDTTLSVSCSDKIARWNAVGVQGALLSYF 221
                  G   G        G V+ KPGR  G+ TLS+SCSDK+ARWN +GVQGALLS+F
Sbjct: 112 LRTKIERG--RGTIPVKGSDGVVRTKPGRLDGERTLSMSCSDKLARWNVLGVQGALLSHF 169

Query: 222 LQPVYLSSITVGRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKVL 273
           ++P+YLSSI +G   ++      +EHL+R+   R+  L   L  PF VN   
Sbjct: 170 IEPIYLSSIVLGSLNHS------QEHLERAFCGRLEGLLSSLPLPFLVNHPE 215

Adenosine deaminases acting on RNA (ADARs) can deaminate adenosine to form inosine. In long double-stranded RNA, this process is non-specific; it occurs site-specifically in RNA transcripts. The former is important in defence against viruses, whereas the latter may affect splicing or untranslated regions. They are primarily nuclear proteins, but a longer isoform of ADAR1 is found predominantly in the cytoplasm. ADARs are derived from the Tad1-like tRNA deaminases that are present across eukaryotes. These in turn belong to the nucleotide/nucleic acid deaminase superfamily and are characterized by a distinct insert between the two conserved cysteines that are involved in binding zinc. Length = 329

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	277
smart00552	374	ADEAMc tRNA-specific and double-stranded RNA adeno	100.0
KOG2777	542	consensus tRNA-specific adenosine deaminase 1 [RNA	100.0
PF02137	343	A_deamin: Adenosine-deaminase (editase) domain; In	100.0

>smart00552 ADEAMc tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase)

Probab=100.00  E-value=2.1e-81  Score=599.47  Aligned_cols=249  Identities=46%  Similarity=0.714  Sum_probs=209.1

Q ss_pred             chHHHHHHHHHHHHhcCCCCCCCCCCCcceEEEEEEecCC-CCeEEEEEeeCCCcccCCccCCCCCccchhHHHHHHHHH
Q 023762            5 CWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISSPS-KDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRA   83 (277)
Q Consensus         5 ~~ad~Ia~~v~~~y~~L~~~gkp~~~ewtvLA~iVl~~~~-~~~~vVSLgTGtKc~~~~~l~~~G~~lhD~HAEVLARR~   83 (277)
                      .|||+||++|+++|++||++|||..+||||||||||+.+. ++++||||||||||+|+++++.+|++|||||||||||||
T Consensus         1 ~~~d~Ia~~v~~~y~~L~k~~kp~~~e~tvLA~iV~~~~~~~~~~vvslgTGtKc~~~~~~~~~G~~lhD~HAEVlArR~   80 (374)
T smart00552        1 DTGDEISQLVLEKFGSLPKIGKPGLREWTILAGVVMTNGMDNEKQVVSLGTGTKCISGEKLSPNGLVLNDCHAEILARRG   80 (374)
T ss_pred             CHHHHHHHHHHHHHHhhhhcCCCCCCCceeEEEEEEEecCCCceEEEEEecCccccchhhhccCCCEEEeCCHHHHHHHH
Confidence            4899999999999999999999999999999999999865 489999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhccCCCcccccCCCCcceeEeeCCCC-ceEeeCCcEEEEEeccCCCCccccccCcCCCCCCC--CCC-
Q 023762           84 LLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPTG-KYRFREGWQLHLYISQLPCGDASLSSCHSAPRNFF--SRE-  159 (277)
Q Consensus        84 f~r~Ly~el~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~Lk~~v~lhlYiS~~PCGdAsi~~~~~~~~~~~--~~~-  159 (277)
                      |+||||+||+++.+           +..+.||+..+++ +|+||+||+||||||++|||||||+.+.....+..  .+. 
T Consensus        81 f~r~l~~el~~~~~-----------~~~~sif~~~~~~~~~~Lk~~v~lhlYiS~~PCGdAs~~~~~~~~~~~~~~~~~~  149 (374)
T smart00552       81 FLRFLYSELQLFNS-----------SSEDSIFEKNKEGGKYKLKSNVLFHLYISTLPCGDASIFSPLEPLKNDDSKHPVR  149 (374)
T ss_pred             HHHHHHHHHHHHhc-----------cCCCceEEECCCCCceEeCCCcEEEEEeccCCccccccccccccccccccccccc
Confidence            99999999998752           1134577776655 99999999999999999999999998765433210  000 


Q ss_pred             -----CCCCCcccccCCccccccccccccceeeeCCCCC--CcccccchhhHHHHHHHhhhhhhhhhcccccceeceEEe
Q 023762          160 -----GNSLSSVDELNGFKDGIYDSLQHIGRVQRKPGRG--DTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITV  232 (277)
Q Consensus       160 -----~~~~~~~~~~~g~~~~~~~~~~~~g~vrtKPGrg--d~t~smSCSDKlarWnvlGlQGaLLS~~iePiylssivi  232 (277)
                           ...+......+|+.+     ++..|+||||||||  ++|+||||||||||||||||||||||||||||||+||||
T Consensus       150 ~~~~~~~~~~~~~~~~g~~~-----~~~~~~vrtkpgr~~~~~t~smSCSDKlarwnvlGlQGaLls~~i~PiYlssivv  224 (374)
T smart00552      150 KNIKRSKLRTKIEIGEGTVP-----VRSSDIVQTWDGIGDGERLLSMSCSDKIARWNVLGVQGALLSHFIEPIYLSSIVL  224 (374)
T ss_pred             cccccccccccccccCCccc-----ccccCccccCCCCCCCCcccccchhHHHHHHHHhhcchHHHHHHhhhhhheeEEe
Confidence                 001111122344332     56789999999999  569999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCChHHHHHHHHhhhccccccCCCCCceecceeeee
Q 023762          233 GRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKVLHML  276 (277)
Q Consensus       233 g~~~~~~~~~~~~~~l~Ral~~R~~~~~~~lp~~y~~~~p~~~~  276 (277)
                      |....     + +++|+|||++|+..+ ..||.+|++|+|.+++
T Consensus       225 g~~~~-----~-~~~l~Ra~~~R~~~~-~~l~~~~~~~~p~~~~  261 (374)
T smart00552      225 GKSLY-----S-AEHLERALYGRLDPL-DGLPTPFRVNRPLISL  261 (374)
T ss_pred             cCccC-----C-HHHHHHHHHhhhccc-ccCCCccccccceeec
Confidence            96332     1 579999999999987 6799999999999864

>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]

Probab=100.00  E-value=2.4e-75  Score=570.79  Aligned_cols=249  Identities=44%  Similarity=0.718  Sum_probs=212.0

Q ss_pred             cchHHHHHHHHHHHHhcCCCCCCCCCCCcceEEEEEEecC-CCCeEEEEEeeCCCcccCCccCCCCCccchhHHHHHHHH
Q 023762            4 ECWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISSP-SKDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARR   82 (277)
Q Consensus         4 ~~~ad~Ia~~v~~~y~~L~~~gkp~~~ewtvLA~iVl~~~-~~~~~vVSLgTGtKc~~~~~l~~~G~~lhD~HAEVLARR   82 (277)
                      ..++|+||++|+++|++|+++++|..++||||||||++.. ..+.+||||||||||++++.|+.+|.+||||||||||||
T Consensus       172 ~~~~~~Ia~lv~~kF~~L~k~~kp~~~~~tvLAgvv~~~~~~~~~~VVslgTGtKcv~g~~ls~~G~iLnDcHAEIlARR  251 (542)
T KOG2777|consen  172 STLGDEIAELVLEKFDELTKNGKPIPREWTVLAGVVMTKRDGEDKKVVSLGTGTKCVSGDKLSPNGLILNDCHAEILARR  251 (542)
T ss_pred             ChHHHHHHHHHHHHHHHHHhcCCCccchhhhhhhhhhcccccccceEEEeeccCcccCcceeCCCCCeeecccHHHHHHH
Confidence            4589999999999999999999999999999999999873 357899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhccCCCcccccCCCCcceeEeeCCCC-ceEeeCCcEEEEEeccCCCCccccccCcCCCCC--CC---
Q 023762           83 ALLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPTG-KYRFREGWQLHLYISQLPCGDASLSSCHSAPRN--FF---  156 (277)
Q Consensus        83 ~f~r~Ly~el~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~Lk~~v~lhlYiS~~PCGdAsi~~~~~~~~~--~~---  156 (277)
                      ||+||||+||+++.+.           ..++||+..++| +|+||+||.||||||++|||||+++.......+  ..   
T Consensus       252 ~llRfLy~eL~l~~~~-----------~~~Sif~~~~~~~~~~LK~nv~fhLYiS~~PCGdA~i~~~~~~~~~~~~~~~~  320 (542)
T KOG2777|consen  252 GLLRFLYSELQLYNSE-----------KKDSIFEKSKEGGKFTLKENVLFHLYISTSPCGDARIFLPSEPATKKLKHVNS  320 (542)
T ss_pred             HHHHHHHHHHHHhhcc-----------CCCceeeecCCCCceecCCCcEEEEEecCCCCCchhhhCccccccccCCCCCc
Confidence            9999999999998621           134677766655 699999999999999999999999987654333  11   


Q ss_pred             CCCCCCCCcccccCCccccccccccccceeeeCCCC--CCcccccchhhHHHHHHHhhhhhhhhhcccccceeceEEeCC
Q 023762          157 SREGNSLSSVDELNGFKDGIYDSLQHIGRVQRKPGR--GDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITVGR  234 (277)
Q Consensus       157 ~~~~~~~~~~~~~~g~~~~~~~~~~~~g~vrtKPGr--gd~t~smSCSDKlarWnvlGlQGaLLS~~iePiylssivig~  234 (277)
                      +.....++....++|+..     ++..+.|||||||  |++++||||||||+|||||||||||||||++||||+|||||.
T Consensus       321 ~~~~~~~~~~~~g~g~~~-----~~~~~~V~T~~Gr~~ger~~smSCSDKLaRWNVLGvQGALLsh~lePIYlssIvlg~  395 (542)
T KOG2777|consen  321 TRRGQLRTKIESGEGTIP-----VGSPDAVQTKPGRLDGERLLSMSCSDKLARWNVLGVQGALLSHFLEPIYLSSIVLGK  395 (542)
T ss_pred             hhhhccchhhhccccccc-----cCCCCcccccCCcccCceeeEechHHHHHHHHHHhhHHHHHHHhhccceeeeeEecc
Confidence            111122233344555443     6778999999999  899999999999999999999999999999999999999997


Q ss_pred             CCCCCCCCChHHHHHHHHhhhccc-cccCCCCCceecceeee
Q 023762          235 SPNTSEDFPLEEHLKRSLYDRILP-LSEELSSPFQVNKVLHM  275 (277)
Q Consensus       235 ~~~~~~~~~~~~~l~Ral~~R~~~-~~~~lp~~y~~~~p~~~  275 (277)
                      ..++      .++|.|||+.|+.. +. .+|.+|.+|+|+++
T Consensus       396 ~~~~------~~~L~rAi~~R~~~~~~-~lp~~~~~n~p~~~  430 (542)
T KOG2777|consen  396 SLHS------PEHLSRAIHGRLSNFLG-NLPPPYILNPPLLS  430 (542)
T ss_pred             ccCC------HHHHHHHHhcccccccC-CCCCceeecCcccc
Confidence            5443      36999999999998 55 49999999999876

>PF02137 A_deamin: Adenosine-deaminase (editase) domain; InterPro: IPR002466 Editase (3

Probab=100.00  E-value=5.6e-68  Score=501.71  Aligned_cols=214  Identities=45%  Similarity=0.754  Sum_probs=117.8

Q ss_pred             EEeeCCCcccCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhccCCCcccccCCCCcceeEeeC--CCCceEeeCC
Q 023762           51 ALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRALLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELG--PTGKYRFREG  128 (277)
Q Consensus        51 SLgTGtKc~~~~~l~~~G~~lhD~HAEVLARR~f~r~Ly~el~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~Lk~~  128 (277)
                      ||||||||+|.++++.+|++||||||||||||||+||||+||+.+....++       ....++|+..  .+++|+||+|
T Consensus         1 SLgTGtKcl~~~~~~~~G~~lhD~HAEVLARR~f~r~L~~el~~~~~~~~~-------~~~~sif~~~~~~~~~~~Lk~~   73 (343)
T PF02137_consen    1 SLGTGTKCLPASKLSSDGRVLHDCHAEVLARRAFLRFLYEELELLLSGGSG-------DKESSIFERNPDGSGKFRLKPG   73 (343)
T ss_dssp             EEEE---B--GGG--TTS-S-SB--HHHHHHHHHHHHHHHHHHHHHH-HH--------HHHHSSEEE-TTSS--EEE-TT
T ss_pred             CccCCCcccCchhcccCCCEEeeCcHHHHHHHHHHHHHHHHHHHHhcCCCc-------cccCceEeecCCCCceeEeCCC
Confidence            799999999999999999999999999999999999999999988632110       0123566654  5679999999


Q ss_pred             cEEEEEeccCCCCccccccCcCCCCCC--CCCCCCC---CCccc---ccCCcccc---ccccccccceeeeCCCCCCccc
Q 023762          129 WQLHLYISQLPCGDASLSSCHSAPRNF--FSREGNS---LSSVD---ELNGFKDG---IYDSLQHIGRVQRKPGRGDTTL  197 (277)
Q Consensus       129 v~lhlYiS~~PCGdAsi~~~~~~~~~~--~~~~~~~---~~~~~---~~~g~~~~---~~~~~~~~g~vrtKPGrgd~t~  197 (277)
                      |+||||||++|||||||+.......+.  .......   .....   ...+....   -...++..|++||||||||++.
T Consensus        74 v~lhlY~S~~PCGdAsi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~RtKPgrgd~~~  153 (343)
T PF02137_consen   74 VKLHLYISQAPCGDASIFPLSSSPWESDPPPESDAQSPLRTKITGAKTVPGEPSDPLRGRANYQQLGIVRTKPGRGDRTP  153 (343)
T ss_dssp             EEEEEEESS--TTHHHHS-TT--------------TT--EEEETSSSEEE--SS----------HHHHH-----TT---E
T ss_pred             eEEEEEeccCccCccccccccccccccccccccccccccccccCCCcccCCCccccccccccccCCceeeeeccccCCCc
Confidence            999999999999999999886521110  0000000   00000   00010000   1124688999999999999999


Q ss_pred             ccchhhHHHHHHHhhhhhhhhhcccccceeceEEeCCCCCCCCCCChHHHHHHHHhhhccccccCCCCCceecceeeee
Q 023762          198 SVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITVGRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKVLHML  276 (277)
Q Consensus       198 smSCSDKlarWnvlGlQGaLLS~~iePiylssivig~~~~~~~~~~~~~~l~Ral~~R~~~~~~~lp~~y~~~~p~~~~  276 (277)
                      |||||||||+|||+||||||||+|||||||+|||||..+.    ++ +++|+|||++|+......+|.||+++.|.|++
T Consensus       154 smSCSDKLarW~vlGlQGaLLS~llePiylssivvg~~~~----~~-~~~l~RA~~~R~~~~~~~l~~~~~~~~p~~~~  227 (343)
T PF02137_consen  154 SMSCSDKLARWNVLGLQGALLSHLLEPIYLSSIVVGDCPK----FS-QEALRRAFCGRLKSLSSRLPPPYRVNPPLIFF  227 (343)
T ss_dssp             EE-HHHHHHHHHHH-SSHHHHHTTB----EEEEEES--SS-------HHHHHHHHTGGG-TT-----TT------EEE-
T ss_pred             ceecccHHHHHHHhccccccHHHhcccceeeEEEEecCCC----CC-HHHHHhhhhcccccccccCCCCceecCcceee
Confidence            9999999999999999999999999999999999997652    11 47999999999966667899999999998874

5 from EC) are enzymes that alter mRNA by catalyzing the site-selective deamination of adenosine residue into inosine residue. The editase domain contains the active site and binds three Zn atoms []. Several editases share a common global arrangement of domains, from N to C terminus: two 'double-stranded RNA-specific adenosine deaminase' (DRADA) repeat domains (IPR000607 from INTERPRO), followed by three 'double-stranded RNA binding' (DsRBD) domains (IPR001159 from INTERPRO), followed by the editase domain. Other editases have a simplified domains structure with no DRADA_REP and possibly fewer DSRBD domains. Editase that deaminate cytidine are not detected by this signature.; GO: 0003723 RNA binding, 0004000 adenosine deaminase activity, 0006396 RNA processing; PDB: 1ZY7_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	277
1zy7_A	403	Crystal Structure Of The Catalytic Domain Of An Ade		3e-33

>pdb|1ZY7|A Chain A, Crystal Structure Of The Catalytic Domain Of An Adenosine Deaminase That Acts On Rna (hadar2) Bound To Inositol Hexakisphosphate (ihp) Length = 403

Iteration: 1
 Score =  138 bits (348), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 100/284 (35%), Positives = 150/284 (52%), Gaps = 38/284 (13%)
Query: 4   ECWGDEVSKKVLWQYKSLPKK-GKPQGREVTVLAAFLISSPS--KDLEVVALGTGTKCIG 60
           +   D VS+ VL ++  L      P  R   VLA  ++++ +  KD +V+++ TGTKCI 
Sbjct: 23  QVLADAVSRLVLGKFGDLTDNFSSPHARR-KVLAGVVMTTGTDVKDAKVISVSTGTKCIN 81
Query: 61  RSLLSPHGDIVNDSHAEIVARRALLRFFYTEV---LNKQKCSNGIEGLRDDVFNNFLFEL 117
              +S  G  +ND HAEI++RR+LLRF YT++   LN +           D     +F+ 
Sbjct: 82  GEYMSDRGLALNDCHAEIISRRSLLRFLYTQLELYLNNK-----------DDQKRSIFQK 130
Query: 118 GPTGKYRFREGWQLHLYISQLPCGDASLSSCHS------APRNFFSREGNSLSSVDELNG 171
              G +R +E  Q HLYIS  PCGDA + S H       A R+   +    L +  E   
Sbjct: 131 SERGGFRLKENVQFHLYISTSPCGDARIFSPHEPILEEPADRHPNRKARGQLRTKIESG- 189
Query: 172 FKDGIYDSLQHIGRVQRKPG--RGDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSS 229
             +G    ++    +Q   G  +G+  L++SCSDKIARWN VG+QG+LLS F++P+Y SS
Sbjct: 190 --EGTI-PVRSNASIQTWDGVLQGERLLTMSCSDKIARWNVVGIQGSLLSIFVEPIYFSS 246
Query: 230 ITVGRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKVL 273
           I +G            +HL R++Y RI  + E+L   + +NK L
Sbjct: 247 IILG-------SLYHGDHLSRAMYQRISNI-EDLPPLYTLNKPL 282
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	277
1zy7_A	403	RNA-specific adenosine deaminase B1, isoform drada	7e-67

>1zy7_A RNA-specific adenosine deaminase B1, isoform drada2A; alpha/beta deaminase motif, zinc coordination, ionsitol hexakisphosphate, hydrolase; HET: IHP; 1.70A {Homo sapiens} Length = 403

 Score =  212 bits (540), Expect = 7e-67
 Identities = 89/276 (32%), Positives = 136/276 (49%), Gaps = 22/276 (7%)

Query: 4   ECWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLIS--SPSKDLEVVALGTGTKCIGR 61
           +   D VS+ VL ++  L            VLA  +++  +  KD +V+++ TGTKCI  
Sbjct: 23  QVLADAVSRLVLGKFGDLTDNFSSPHARRKVLAGVVMTTGTDVKDAKVISVSTGTKCING 82

Query: 62  SLLSPHGDIVNDSHAEIVARRALLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPTG 121
             +S  G  +ND HAEI++RR+LLRF YT++       +  +          +F+    G
Sbjct: 83  EYMSDRGLALNDCHAEIISRRSLLRFLYTQLELYLNNKDDQK--------RSIFQKSERG 134

Query: 122 KYRFREGWQLHLYISQLPCGDASLSSCHSAPRNFFS--REGNSLSSVDELNGFKDGIYDS 179
            +R +E  Q HLYIS  PCGDA + S H       +                        
Sbjct: 135 GFRLKENVQFHLYISTSPCGDARIFSPHEPILEEPADRHPNRKARGQLRTKIESGEGTIP 194

Query: 180 LQHIGRVQRKPGR--GDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITVGRSPN 237
           ++    +Q   G   G+  L++SCSDKIARWN VG+QG+LLS F++P+Y SSI +G   +
Sbjct: 195 VRSNASIQTWDGVLQGERLLTMSCSDKIARWNVVGIQGSLLSIFVEPIYFSSIILGSLYH 254

Query: 238 TSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKVL 273
                   +HL R++Y RI  +  +L   + +NK L
Sbjct: 255 -------GDHLSRAMYQRISNIE-DLPPLYTLNKPL 282

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	277
1zy7_A	403	RNA-specific adenosine deaminase B1, isoform drada	100.0

>1zy7_A RNA-specific adenosine deaminase B1, isoform drada2A; alpha/beta deaminase motif, zinc coordination, ionsitol hexakisphosphate, hydrolase; HET: IHP; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.4e-78  Score=580.04  Aligned_cols=251  Identities=37%  Similarity=0.613  Sum_probs=201.0

Q ss_pred             cchHHHHHHHHHHHHhcCCCCCCCCCCCcceEEEEEEecCC--CCeEEEEEeeCCCcccCCccCCCCCccchhHHHHHHH
Q 023762            4 ECWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISSPS--KDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVAR   81 (277)
Q Consensus         4 ~~~ad~Ia~~v~~~y~~L~~~gkp~~~ewtvLA~iVl~~~~--~~~~vVSLgTGtKc~~~~~l~~~G~~lhD~HAEVLAR   81 (277)
                      ..|||+||++|+++|++|++++||...|||||||||++.+.  ++++||||||||||+++++++.+|++|||||||||||
T Consensus        23 ~~~ad~Ia~~v~~~f~~L~~~~kp~~~~~tvLA~iV~~~~~~~~~~~vVslgTGtKc~~~~~~~~~G~vlhD~HAEVlAR  102 (403)
T 1zy7_A           23 QVLADAVSRLVLGKFGDLTDNFSSPHARRKVLAGVVMTTGTDVKDAKVISVSTGTKCINGEYMSDRGLALNDCHAEIISR  102 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTTTSGGGCCSCEEEEEEEESSCGGGCEEEEEEECCCBCCGGGCCTTSCSCSBCCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEEEEEccCCCCceEEEEEcCCCCccCcccccCCCCeeeeCCHHHHHH
Confidence            46899999999999999999999999999999999999752  5799999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhccCCCcccccCCCCcceeEeeCCCCceEeeCCcEEEEEeccCCCCccccccCcCCCCCCCC-C--
Q 023762           82 RALLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPTGKYRFREGWQLHLYISQLPCGDASLSSCHSAPRNFFS-R--  158 (277)
Q Consensus        82 R~f~r~Ly~el~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Lk~~v~lhlYiS~~PCGdAsi~~~~~~~~~~~~-~--  158 (277)
                      |||+||||+||+.+....       . ....+||++.++|+|+||+||+||||||++|||||||+.+.+...+... .  
T Consensus       103 Raf~r~L~~ql~~~~~~~-------~-~~~~sif~~~~~~~~~Lk~~v~lhlY~S~~PCGdAsi~~p~~~~~~~~~~~~~  174 (403)
T 1zy7_A          103 RSLLRFLYTQLELYLNNK-------D-DQKRSIFQKSERGGFRLKENVQFHLYISTSPCGDARIFSPHEPILEEPADRHP  174 (403)
T ss_dssp             HHHHHHHHHHHHHHHHCH-------H-HHHHCSEEECTTSSEEECTTEEEEEEESSCCTTHHHHC---------------
T ss_pred             HHHHHHHHHHHHHHhccc-------c-CCCCceEEECCCCCeEECCCcEEEEEeccCCCCCcccCCccccccccccccCc
Confidence            999999999998764100       0 1134588888889999999999999999999999999876443211000 0  


Q ss_pred             ----CCCCCCcccccCCccccccccccccceeeeCCC--CCCcccccchhhHHHHHHHhhhhhhhhhcccccceeceEEe
Q 023762          159 ----EGNSLSSVDELNGFKDGIYDSLQHIGRVQRKPG--RGDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITV  232 (277)
Q Consensus       159 ----~~~~~~~~~~~~g~~~~~~~~~~~~g~vrtKPG--rgd~t~smSCSDKlarWnvlGlQGaLLS~~iePiylssivi  232 (277)
                          .+..+..+..++|..+.     ...+.++|+||  ||++|+||||||||||||||||||||||+|+|||||+||||
T Consensus       175 ~~~~~g~lr~k~~~g~g~~p~-----~~~~~~~~~~gvl~g~~t~smSCSDKlarWnvlGlQGaLLs~fi~PiYlssiv~  249 (403)
T 1zy7_A          175 NRKARGQLRTKIESGEGTIPV-----RSNASIQTWDGVLQGERLLTMSCSDKIARWNVVGIQGSLLSIFVEPIYFSSIIL  249 (403)
T ss_dssp             --CCTTCCEEEETTCSSCEEC-----CSSCCCCCHHHHHTTCCCEEECHHHHHHHHHHHCSSHHHHHTTBCCCCEEEEEE
T ss_pred             chhhccccceeeccCCCCCCC-----CCcccccccccccccCcceeechHHHHHHHHHhccchHHHhhhcccceeEEEEe
Confidence                01111122223332221     11234567777  89999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCChHHHHHHHHhhhccccccCCCCCceecceeee
Q 023762          233 GRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKVLHM  275 (277)
Q Consensus       233 g~~~~~~~~~~~~~~l~Ral~~R~~~~~~~lp~~y~~~~p~~~  275 (277)
                      |+.++       .++|+||+++|+..+ ..||.||++|+|.|.
T Consensus       250 g~~~~-------~~~l~RA~~~R~~~~-~~lp~~~~~~~p~~~  284 (403)
T 1zy7_A          250 GSLYH-------GDHLSRAMYQRISNI-EDLPPLYTLNKPLLS  284 (403)
T ss_dssp             SSCCC-------HHHHHHHHTGGGTTC-CCCCTTCCCCCCEEE
T ss_pred             CCcCC-------HHHHHHHHHHhhhhh-ccCCCcceecccccc
Confidence            98754       479999999999886 469999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00