Citrus Sinensis ID: 023772

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------
Protein Sequence
MSVSDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLLL
Secondary Structure (PSIPRED)
cEEccccccccEEEEcccccEEEEEEcccccEEEEEEccccEEEEcccccEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEcccccccEEEEEEcccccEEEEEcccccEEEEEccccccccEEEcccccccEEEEEEccccEEEEcccccEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEcccccccEEEEEEcccccEEEEEcccccEEEEEccccEEEEEEEcccccEEEEc
Secondary Structure Prediction (SSPRO)
ccEEEccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEEcccccEEEEEEccccEEEEcccccEEEEEEcccccEEEEEcccEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEc
Coil and Loop (DISEMBL)
msvsdlprteanvlkgHEGAVLAARfngdgnyclscgkdrtirlwnphrgihiktykshgrevrdvhvtadnskliscggdrqifywdvSTGRVIRKfrghesevnavkfNEYSSVVVSagydqslrawdcrshstepiqIIDSFQDSVMSVCLTKteiiggsvdgtvrtFDIRVGrelsddlgqpvncismsndgncilaSCLDSTLRLLDRSTGELLQEYKGHicksfktdccltnsdahvtggsedgyIYFWDLVDASVVAKFKAHSLVVKLLL
Flexible Loop (DISEMBL)
MSVSDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKdrtirlwnphRGIHIktykshgrevrDVHVTadnskliscggdrqifywDVSTGRVIRKFrghesevnavkfneysSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKteiiggsvdgtvRTFDIRVGRelsddlgqpvNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLLL
Low Complexity Region (SEG)
MSVSDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLLL
Disordered region (IsUnstruct)
*************LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKL**
Disordered Region (DISOPRED)
MSVSDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLLL
Disordered Region (DISEMBL)
*********EANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLLL
Disordered Region (DISPRO)
MSVSDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLLL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVSDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	277	2.2.26 [Sep-21-2011]
Q5BLX8	315	WD repeat domain-containi	yes	no	0.989	0.869	0.510	1e-79
Q9BRX9	315	WD repeat domain-containi	yes	no	0.985	0.866	0.509	1e-79
Q5XGI5	314	WD repeat domain-containi	yes	no	0.978	0.863	0.496	5e-79
Q9DAJ4	315	WD repeat domain-containi	yes	no	0.989	0.869	0.503	1e-78
Q6DH44	315	WD repeat domain-containi	yes	no	0.974	0.857	0.482	3e-76
Q3KQ62	314	WD repeat domain-containi	N/A	no	0.978	0.863	0.5	1e-75
Q9C1X0	297	Uncharacterized WD repeat	yes	no	0.833	0.777	0.403	1e-47
Q54H44	325	WD repeat domain-containi	yes	no	0.938	0.8	0.327	6e-46
Q2KIG2	334	WD repeat-containing prot	no	no	0.924	0.766	0.314	3e-35
Q498M4	334	WD repeat-containing prot	no	no	0.924	0.766	0.314	3e-35

>sp|Q5BLX8|WDR83_RAT WD repeat domain-containing protein 83 OS=Rattus norvegicus GN=Wdr83 PE=1 SV=1

 Score =  296 bits (758), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 140/274 (51%), Positives = 184/274 (67%)

Query: 3   VSDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGRE 62
             +LPR +   L   +GAV A RFN DGNYCL+CG D+T++LWNP RG  ++TY  HG E
Sbjct: 10  APELPRKQLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYE 69

Query: 63  VRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGY 122
           V D   + DNS L S GGD+ +  WDV+TG+V+RKFRGH  +VN V+FNE ++V++S   
Sbjct: 70  VLDAAGSFDNSHLCSGGGDKTVVLWDVATGQVVRKFRGHAGKVNTVQFNEEATVILSGSI 129

Query: 123 DQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDD 182
           D S+R WDCRS   EP+Q +D  +D + SV ++  EI+ GSVDG VR +D+R+G+  SD 
Sbjct: 130 DSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEILAGSVDGRVRRYDLRMGQVTSDY 189

Query: 183 LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAH 242
           +G P+ C   S DG C L S LDSTLRLLD+ TGELL EY GH  + +K DCCL+  D H
Sbjct: 190 VGSPITCTCFSRDGQCTLISSLDSTLRLLDKDTGELLGEYVGHKNQKYKLDCCLSERDTH 249

Query: 243 VTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL 276
           V   SEDG ++FWDLV+ S+       S VV+ L
Sbjct: 250 VVSCSEDGKVFFWDLVEGSLALALPVGSNVVQSL 283

Molecular scaffold protein for various multimeric protein complexes. Acts as a module in the assembly of a multicomponent scaffold for the ERK pathway, linking ERK responses to specific agonists. At low concentrations it enhances ERK activation, whereas high concentrations lead to the inhibition of ERK activation (By similarity). Also involved in response to hypoxia by acting as a negative regulator of HIF1A/HIF-1-alpha via its interaction with EGLN3/PHD3. May promote degradation of HIF1A. May act by recruiting signaling complexes to a specific upstream activator. May also be involved in pre-mRNA splicing.
Rattus norvegicus (taxid: 10116)

>sp|Q9BRX9|WDR83_HUMAN WD repeat domain-containing protein 83 OS=Homo sapiens GN=WDR83 PE=1 SV=1

 Score =  296 bits (758), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 139/273 (50%), Positives = 184/273 (67%)

Query: 4   SDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREV 63
            +LP+     L   +GAV A RFN DGNYCL+CG D+T++LWNP RG  ++TY  HG EV
Sbjct: 11  PELPQKRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEV 70

Query: 64  RDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYD 123
            D   + DNS L S GGD+ +  WDV++G+V+RKFRGH  +VN V+FNE ++V++S   D
Sbjct: 71  LDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSID 130

Query: 124 QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDL 183
            S+R WDCRS   EP+Q +D  +D V SV ++  EI+ GSVDG VR +D+R+G+  SD +
Sbjct: 131 SSIRCWDCRSRRPEPVQTLDEARDGVSSVKVSDHEILAGSVDGRVRRYDLRMGQLFSDYV 190

Query: 184 GQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHV 243
           G P+ C   S DG C L S LDSTLRLLD+ TGELL EYKGH  + +K DCCL+  D HV
Sbjct: 191 GSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYKGHKNQEYKLDCCLSERDTHV 250

Query: 244 TGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL 276
              SEDG ++FWDLV+ ++       S VV+ L
Sbjct: 251 VSCSEDGKVFFWDLVEGALALALPVGSGVVQSL 283

Molecular scaffold protein for various multimeric protein complexes. Acts as a module in the assembly of a multicomponent scaffold for the ERK pathway, linking ERK responses to specific agonists. At low concentrations it enhances ERK activation, whereas high concentrations lead to the inhibition of ERK activation. Also involved in response to hypoxia by acting as a negative regulator of HIF1A/HIF-1-alpha via its interaction with EGLN3/PHD3. May promote degradation of HIF1A. May act by recruiting signaling complexes to a specific upstream activator (By similarity). May also be involved in pre-mRNA splicing.

Homo sapiens (taxid: 9606)

>sp|Q5XGI5|WDR83_XENTR WD repeat domain-containing protein 83 OS=Xenopus tropicalis GN=wdr83 PE=2 SV=1

 Score =  294 bits (752), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 136/274 (49%), Positives = 185/274 (67%)

Query: 3   VSDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGRE 62
             +LP+   + L+ ++GAV A RFN DGNYC++CG D+T++LWNPH+G  +KTY  HG E
Sbjct: 10  APELPQKLQHKLECNQGAVRAVRFNVDGNYCMTCGSDKTLKLWNPHKGTLLKTYSGHGYE 69

Query: 63  VRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGY 122
           V D   + DNS++ SC  D+ +  WDV+ G+V+RKFRGH  +VN V+FNE ++V++S   
Sbjct: 70  VLDTAGSYDNSQMCSCSSDKTVILWDVAQGQVVRKFRGHAGKVNCVQFNEEATVIMSGSI 129

Query: 123 DQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDD 182
           D S+R WDCRS   E IQI+D  +D + S+ ++  EI+ GSVDG +R +D+R G   +D 
Sbjct: 130 DSSIRCWDCRSRRPEAIQILDEAKDGISSIKISDHEILAGSVDGNLRRYDLRKGEMCADY 189

Query: 183 LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAH 242
           LG P+ C+S S D  C+LAS LDSTLRLLD+ TGELL EY GH   S+K D CL+  D H
Sbjct: 190 LGSPITCVSFSQDSQCLLASSLDSTLRLLDKDTGELLGEYTGHQNHSYKLDSCLSEKDTH 249

Query: 243 VTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL 276
           V   SEDG + FWDLV+ S+V K       V+ L
Sbjct: 250 VLSCSEDGTVCFWDLVEGSLVLKLPVGKAAVQSL 283

Molecular scaffold protein for various multimeric protein complexes. Acts as a module in the assembly of a multicomponent scaffold for the ERK pathway, linking ERK responses to specific agonists. Also involved in response to hypoxia by acting as a negative regulator of HIF1A/HIF-1-alpha.

Xenopus tropicalis (taxid: 8364)

>sp|Q9DAJ4|WDR83_MOUSE WD repeat domain-containing protein 83 OS=Mus musculus GN=Wdr83 PE=1 SV=1

 Score =  293 bits (750), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 138/274 (50%), Positives = 183/274 (66%)

Query: 3   VSDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGRE 62
             +LP+     L   +GAV A RFN DGNYCL+CG D+T++LWNP RG  ++TY  HG E
Sbjct: 10  APELPQKRMKTLDCSQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYE 69

Query: 63  VRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGY 122
           V D   + DNS L S GGD+ +  WDV+TG+V+RKFRGH  +VN V+FNE ++V++S   
Sbjct: 70  VLDAAGSFDNSHLCSGGGDKTVVLWDVATGQVVRKFRGHAGKVNTVQFNEEATVILSGSI 129

Query: 123 DQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDD 182
           D S+R WDCRS   EP+Q +D  +D + SV ++  EI+ GSVDG VR +D+R+G+  SD 
Sbjct: 130 DSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEILAGSVDGRVRRYDLRMGQVSSDY 189

Query: 183 LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAH 242
           +G P+ C   S DG C L S LDSTLRLLD+ TGELL EY GH  + +K DCCL+  D H
Sbjct: 190 VGSPITCTCFSRDGQCTLISSLDSTLRLLDKDTGELLGEYVGHKNQQYKLDCCLSERDTH 249

Query: 243 VTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL 276
           V   SEDG ++FWDLV+ ++       S VV+ L
Sbjct: 250 VVSCSEDGKVFFWDLVEGALALALPVGSNVVQSL 283

Molecular scaffold protein for various multimeric protein complexes. Involved in response to hypoxia by acting as a negative regulator of HIF1A/HIF-1-alpha via its interaction with EGLN3/PHD3. May promote degradation of HIF1A. May act by recruiting signaling complexes to a specific upstream activator (By similarity). Also acts as a module in the assembly of a multicomponent scaffold for the ERK pathway, linking ERK responses to specific agonists. At low concentrations it enhances ERK activation, whereas high concentrations lead to the inhibition of ERK activation. May also be involved in pre-mRNA splicing.

Mus musculus (taxid: 10090)

>sp|Q6DH44|WDR83_DANRE WD repeat domain-containing protein 83 OS=Danio rerio GN=wdr83 PE=2 SV=1

 Score =  285 bits (729), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 134/278 (48%), Positives = 186/278 (66%), Gaps = 8/278 (2%)

Query: 7   PRTEANVLKGH--------EGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKS 58
           PR +A  L  H        +GAV A RFN DGNY L+CG D++++LW+  RG  +KTY  
Sbjct: 6   PRPQAPQLPQHLWRTVDCQQGAVRAVRFNADGNYLLTCGSDKSLKLWSVSRGTLLKTYSG 65

Query: 59  HGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVV 118
           HG EV D   + DNS+L SC  D+ +  WDV++G+V RK RGH  +VN V+FNE ++V++
Sbjct: 66  HGYEVLDADGSYDNSQLCSCSSDKTVILWDVASGQVTRKLRGHAGKVNCVQFNEEATVML 125

Query: 119 SAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRE 178
           S   D ++R WD RS   EPIQI+D  QD + S+ +++ E++ GSVDG VR +D+R+G+ 
Sbjct: 126 SGSIDGTVRCWDTRSRRMEPIQILDESQDGISSLKVSEHELLTGSVDGRVRRYDLRMGQL 185

Query: 179 LSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN 238
             D +G P+ C+  S DG C L+S LDST+RLLD+STGE+L EY GH+ K +K DCCLT+
Sbjct: 186 QVDYIGSPITCVCFSRDGQCTLSSSLDSTVRLLDKSTGEMLGEYSGHVNKGYKLDCCLTD 245

Query: 239 SDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL 276
            D HV   SEDG++Y+WDLV+ S+  K      VV+ L
Sbjct: 246 KDTHVLSCSEDGHVYYWDLVEGSLTLKLPVGKAVVQSL 283

Molecular scaffold protein for various multimeric protein complexes. Acts as a module in the assembly of a multicomponent scaffold for the ERK pathway, linking ERK responses to specific agonists. Also involved in response to hypoxia by acting as a negative regulator of HIF1A/HIF-1-alpha.

Danio rerio (taxid: 7955)

>sp|Q3KQ62|WDR83_XENLA WD repeat domain-containing protein 83 OS=Xenopus laevis GN=wdr83 PE=2 SV=1

 Score =  283 bits (723), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 137/274 (50%), Positives = 186/274 (67%)

Query: 3   VSDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGRE 62
             +LP+   + L+ ++GAV A RFN DGNYC++CG D++++LWNPH+G  +KTY  HG E
Sbjct: 10  APELPQKLQHKLECNQGAVRAVRFNVDGNYCMTCGSDKSLKLWNPHKGSLLKTYSGHGYE 69

Query: 63  VRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGY 122
           V D   + DNS+L SC  D+ +  WDV+ G+V+RKFRGH  +VN V+FNE ++V++S   
Sbjct: 70  VLDTAGSCDNSQLCSCSSDKTVILWDVAQGQVVRKFRGHAGKVNCVQFNEEATVIISGSI 129

Query: 123 DQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDD 182
           D S+R WDCRS   + IQI+D  +D + SV ++  EI+ GSVDG +R +D+R G   +D 
Sbjct: 130 DSSIRCWDCRSRRPDAIQIMDEAKDGISSVKVSAHEILAGSVDGNLRRYDLRKGEMCADY 189

Query: 183 LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAH 242
           LG P+ C+S S D  C+LAS LDSTLRLLD+ TGELL EY GH   S+K D CL+  D H
Sbjct: 190 LGSPITCVSFSQDSQCLLASSLDSTLRLLDKDTGELLGEYTGHQNLSYKLDSCLSEKDTH 249

Query: 243 VTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL 276
           V   SEDG + FWDLV+ S+V K      VV+ L
Sbjct: 250 VLSCSEDGTVCFWDLVEGSLVLKLPVGKAVVQSL 283

Molecular scaffold protein for various multimeric protein complexes. Acts as a module in the assembly of a multicomponent scaffold for the ERK pathway, linking ERK responses to specific agonists. Also involved in response to hypoxia by acting as a negative regulator of HIF1A/HIF-1-alpha.

Xenopus laevis (taxid: 8355)

>sp|Q9C1X0|YN55_SCHPO Uncharacterized WD repeat-containing protein C713.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC713.05 PE=3 SV=1

 Score =  190 bits (482), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 94/233 (40%), Positives = 142/233 (60%)

Query: 25  RFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQI 84
           ++N  G Y L+ G +R +RLWN   G  I  Y  HG E+ D+ +  D++K  SCGGD+ I
Sbjct: 21  KYNRTGKYVLAAGNERVVRLWNVKSGACIHEYAGHGHEILDLDLVYDSTKFASCGGDKFI 80

Query: 85  FYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDS 144
             WDV+TG+V R+  GH +++N +++NE SS++ S  +D  +R WDCRS+S  PIQ++  
Sbjct: 81  QVWDVNTGKVDRRLGGHLAQINTIRYNEDSSILASGSFDSKVRLWDCRSNSFSPIQVLAD 140

Query: 145 FQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCL 204
            +DSV S+ + +  I+ GS DGT+RT+DIR G   SD    P+  +  S   +  L S L
Sbjct: 141 AKDSVSSIDIAEHLIVTGSTDGTLRTYDIRKGTLSSDYFSHPITSVKTSKSASFSLISSL 200

Query: 205 DSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDL 257
           +S++ LLD+ TG++L+ Y G     ++       S+  V  GSEDG +Y WDL
Sbjct: 201 NSSIHLLDQETGKILKSYIGLKNMEYRVRSSFNQSETIVFSGSEDGKVYLWDL 253

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q54H44|WDR83_DICDI WD repeat domain-containing protein 83 homolog OS=Dictyostelium discoideum GN=morg1 PE=3 SV=1

 Score =  184 bits (467), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 95/290 (32%), Positives = 168/290 (57%), Gaps = 30/290 (10%)

Query: 13  VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
           VL  H G+V   ++N DG YCLS   D++I+L+N  +G  I +++ HG  + D+  T+DN
Sbjct: 9   VLSNHSGSVTVVKYNSDGGYCLSGSSDKSIKLYNVSKGSMIHSFEEHGYGIGDLVSTSDN 68

Query: 73  SKLISCGGDRQIFYWDVSTGRVIRKFR-GHESEVNAVKFNEYSSVVVSAGYDQSLRAWDC 131
            +L SC  ++Q++ WD+++G+VIR+F+  H   + +V  N  S+++ S   D+ ++AWD 
Sbjct: 69  KQLFSC-AEKQLYQWDIASGQVIRRFQNAHNDTITSVCVNLDSTLLFSGSSDRLVKAWDL 127

Query: 132 RSHSTEPIQIIDSFQDSVMSVCL----------------------------TKTEIIGGS 163
           R+ S  P+QI+D  +D++ S+ +                            T+ E+I  S
Sbjct: 128 RTKSINPVQILDDAKDTITSIIVNEQTITHNHSHGHGHSHGNNNNNQPHTHTQKEVITSS 187

Query: 164 VDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYK 223
           VDG +RT+D+R+G  ++ +   P++ +S++ D  C +ASC D T++L+D  + E L+EYK
Sbjct: 188 VDGCIRTYDVRMGTLVTYEDTIPISSVSITKDKKCFIASCTDETVKLIDIDSYETLKEYK 247

Query: 224 GHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
           GH  K +K + C    D+ +  GSED   Y ++L+   +++K   HS ++
Sbjct: 248 GHKNKVYKINSCSNFDDSLIISGSEDNDFYIYELLSGKLLSKLSGHSNII 297

Molecular scaffold protein for various multimeric protein complexes. Acts as a module in the assembly of a multicomponent scaffold for the ERK pathway, linking ERK responses to specific agonists. Also involved in response to hypoxia.

Dictyostelium discoideum (taxid: 44689)

>sp|Q2KIG2|WDR5_BOVIN WD repeat-containing protein 5 OS=Bos taurus GN=WDR5 PE=2 SV=1

 Score =  149 bits (375), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 142/270 (52%), Gaps = 14/270 (5%)

Query: 13  VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
            L GH  AV + +F+ +G +  S   D+ I++W  + G   KT   H   + DV  ++D+
Sbjct: 40  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99

Query: 73  SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
           + L+S   D+ +  WDVS+G+ ++  +GH + V    FN  S+++VS  +D+S+R WD +
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 159

Query: 133 SHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVG---RELSDDLGQPV 187
           +     ++ + +  D V +V   +  + I+  S DG  R +D   G   + L DD   PV
Sbjct: 160 TGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 217

Query: 188 NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN----SDAHV 243
           + +  S +G  ILA+ LD+TL+L D S G+ L+ Y GH  + +   C   N        +
Sbjct: 218 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWI 274

Query: 244 TGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
             GSED  +Y W+L    +V K + H+ VV
Sbjct: 275 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 304

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.

Bos taurus (taxid: 9913)

>sp|Q498M4|WDR5_RAT WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2 SV=1

 Score =  149 bits (375), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 142/270 (52%), Gaps = 14/270 (5%)

Query: 13  VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
            L GH  AV + +F+ +G +  S   D+ I++W  + G   KT   H   + DV  ++D+
Sbjct: 40  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99

Query: 73  SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
           + L+S   D+ +  WDVS+G+ ++  +GH + V    FN  S+++VS  +D+S+R WD +
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 159

Query: 133 SHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVG---RELSDDLGQPV 187
           +     ++ + +  D V +V   +  + I+  S DG  R +D   G   + L DD   PV
Sbjct: 160 TGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 217

Query: 188 NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN----SDAHV 243
           + +  S +G  ILA+ LD+TL+L D S G+ L+ Y GH  + +   C   N        +
Sbjct: 218 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWI 274

Query: 244 TGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
             GSED  +Y W+L    +V K + H+ VV
Sbjct: 275 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 304

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
224056082	300	predicted protein [Populus trichocarpa]	0.971	0.896	0.900	1e-145
449448452	299	PREDICTED: WD repeat domain-containing p	0.978	0.906	0.886	1e-143
225442178	299	PREDICTED: WD repeat domain-containing p	0.978	0.906	0.882	1e-143
357519775	306	Mitogen-activated protein kinase organiz	0.978	0.885	0.875	1e-141
356525570	299	PREDICTED: WD repeat domain-containing p	0.978	0.906	0.886	1e-141
217074194	299	unknown [Medicago truncatula] gi|3885017	0.978	0.906	0.871	1e-141
356512795	300	PREDICTED: WD repeat domain-containing p	0.985	0.91	0.872	1e-138
18424859	299	transducin/WD40 domain-containing protei	0.978	0.906	0.824	1e-134
10177204	343	unnamed protein product [Arabidopsis tha	0.981	0.793	0.823	1e-133
297794067	300	transducin family protein [Arabidopsis l	0.974	0.9	0.823	1e-133

>gi|224056082|ref|XP_002298725.1| predicted protein [Populus trichocarpa] gi|222845983|gb|EEE83530.1| predicted protein [Populus trichocarpa]

 Score =  518 bits (1335), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 244/271 (90%), Positives = 260/271 (95%)

Query: 3   VSDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGRE 62
           VS+LP  EANVLKGHEG VLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGRE
Sbjct: 4   VSELPNKEANVLKGHEGGVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGRE 63

Query: 63  VRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGY 122
           VRDVHVT DNSKL+SCGGDRQ+FYWDV+TGRVIRKFRGH SEVNAVKFNEY+SVVVSAGY
Sbjct: 64  VRDVHVTQDNSKLVSCGGDRQVFYWDVATGRVIRKFRGHGSEVNAVKFNEYASVVVSAGY 123

Query: 123 DQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDD 182
           DQSLRAWDCRSHSTEPIQIID+F DSVMSVCLTKTEII GSVDGTVRTFDIR+GRE+SD+
Sbjct: 124 DQSLRAWDCRSHSTEPIQIIDTFSDSVMSVCLTKTEIIAGSVDGTVRTFDIRIGREISDN 183

Query: 183 LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAH 242
           LG PVNCISMSNDGNCILASCLDSTLRLLDR+TGELLQEYKGHICKS+K DCCLTN+DAH
Sbjct: 184 LGHPVNCISMSNDGNCILASCLDSTLRLLDRTTGELLQEYKGHICKSYKLDCCLTNTDAH 243

Query: 243 VTGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
           V GGSEDGYIYFWDLVDASV+++F+AHS VV
Sbjct: 244 VAGGSEDGYIYFWDLVDASVLSRFRAHSSVV 274

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448452|ref|XP_004141980.1| PREDICTED: WD repeat domain-containing protein 83-like [Cucumis sativus]

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 242/273 (88%), Positives = 260/273 (95%)

Query: 1   MSVSDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG 60
           MSVS+LP  E+NVLKGHEG VLAARFN DGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG
Sbjct: 1   MSVSELPTKESNVLKGHEGGVLAARFNSDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG 60

Query: 61  REVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSA 120
           REVRDVHVT DNSKL SCGGDRQ+FYWDVSTGRVIRKFRGH+ EVNAVKFNEY+SVVVSA
Sbjct: 61  REVRDVHVTPDNSKLCSCGGDRQVFYWDVSTGRVIRKFRGHDGEVNAVKFNEYASVVVSA 120

Query: 121 GYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELS 180
           GYDQSLRAWDCRSHSTEPIQIID+F DSVMSVCLTK+EIIGGSVDGTVRTFD+R+GRE+S
Sbjct: 121 GYDQSLRAWDCRSHSTEPIQIIDTFSDSVMSVCLTKSEIIGGSVDGTVRTFDMRIGREIS 180

Query: 181 DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSD 240
           D+LGQ VNCISMSND NCILASCLDSTLRLLDRS+GELLQEYKGH CKS+K DCCLTN+D
Sbjct: 181 DNLGQTVNCISMSNDANCILASCLDSTLRLLDRSSGELLQEYKGHTCKSYKLDCCLTNTD 240

Query: 241 AHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
           AHVTGGSEDG++YFWDLVDASVV+KF+AHS VV
Sbjct: 241 AHVTGGSEDGFVYFWDLVDASVVSKFRAHSSVV 273

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442178|ref|XP_002274426.1| PREDICTED: WD repeat domain-containing protein 83 [Vitis vinifera] gi|297743030|emb|CBI35897.3| unnamed protein product [Vitis vinifera]

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 241/273 (88%), Positives = 259/273 (94%)

Query: 1   MSVSDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG 60
           M ++ LP+ EANVL+GHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG
Sbjct: 1   MGIAGLPKKEANVLRGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG 60

Query: 61  REVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSA 120
           REVRDVHV  DNSKL SCGGDRQ+FYWDVSTGRVIRKFRGH+SEVNAVKFNEY+SVVVSA
Sbjct: 61  REVRDVHVAPDNSKLCSCGGDRQLFYWDVSTGRVIRKFRGHDSEVNAVKFNEYASVVVSA 120

Query: 121 GYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELS 180
           GYD+SLRAWDCRSHSTEPIQIID+F DSVMSVCLTK+EII GSVDGTVRTFDIR+GRELS
Sbjct: 121 GYDRSLRAWDCRSHSTEPIQIIDTFSDSVMSVCLTKSEIIAGSVDGTVRTFDIRIGRELS 180

Query: 181 DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSD 240
           DDLGQPVNCISMSND NCILASCLDSTLRLLDRSTGELLQEYKGH CKS+K DCCLTN+D
Sbjct: 181 DDLGQPVNCISMSNDANCILASCLDSTLRLLDRSTGELLQEYKGHTCKSYKMDCCLTNTD 240

Query: 241 AHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
           AHVT GSEDG+I+FWDLVDASVV+ F+AH+ VV
Sbjct: 241 AHVTSGSEDGFIFFWDLVDASVVSSFRAHASVV 273

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519775|ref|XP_003630176.1| Mitogen-activated protein kinase organizer [Medicago truncatula] gi|355524198|gb|AET04652.1| Mitogen-activated protein kinase organizer [Medicago truncatula]

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 239/273 (87%), Positives = 256/273 (93%)

Query: 1   MSVSDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG 60
           MSV DLPR E NVLKGHEG VLAARFN DGNY LSCGKDRTIRLWNPHRGIHIKTYKSHG
Sbjct: 8   MSVEDLPRKEVNVLKGHEGGVLAARFNSDGNYILSCGKDRTIRLWNPHRGIHIKTYKSHG 67

Query: 61  REVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSA 120
           REVRDVHVT DNSKL SCGGDRQ++YWDV+TGRVIRKFRGH+ EVN VKFNEYSSVVVSA
Sbjct: 68  REVRDVHVTTDNSKLCSCGGDRQVYYWDVATGRVIRKFRGHDGEVNGVKFNEYSSVVVSA 127

Query: 121 GYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELS 180
           GYDQSLRAWDCRSHSTEPIQIID+F DSVMSVCLTKTEIIGGSVDGTVRTFD+R+GRE+S
Sbjct: 128 GYDQSLRAWDCRSHSTEPIQIIDTFADSVMSVCLTKTEIIGGSVDGTVRTFDMRIGREIS 187

Query: 181 DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSD 240
           D LGQPVNCISMSNDGNCILA CLDST+RLLDR+TGELLQEYKGH  KS+K DCCLTN+D
Sbjct: 188 DSLGQPVNCISMSNDGNCILAGCLDSTVRLLDRTTGELLQEYKGHTNKSYKLDCCLTNTD 247

Query: 241 AHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
           AHVTGGSEDG++YFWDLVDASVV+KF+AH+ VV
Sbjct: 248 AHVTGGSEDGFVYFWDLVDASVVSKFRAHTSVV 280

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525570|ref|XP_003531397.1| PREDICTED: WD repeat domain-containing protein 83-like [Glycine max]

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 242/273 (88%), Positives = 254/273 (93%)

Query: 1   MSVSDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG 60
           MSV DLP  E NVLKGHEG VLAARFNGDGNY LSCGKDRTIRLWNPHRGIHIKTYKSH 
Sbjct: 1   MSVEDLPGKEVNVLKGHEGGVLAARFNGDGNYVLSCGKDRTIRLWNPHRGIHIKTYKSHA 60

Query: 61  REVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSA 120
           REVRDVHVT DNSKL SCGGDRQIFYWDV+TGRVIRKFRGH+ EVN VKFNEYSSVVVSA
Sbjct: 61  REVRDVHVTQDNSKLCSCGGDRQIFYWDVATGRVIRKFRGHDGEVNGVKFNEYSSVVVSA 120

Query: 121 GYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELS 180
           GYDQSLRAWDCRSHSTEPIQIID+F DSVMSVCLTKTEIIGGSVDGTVRTFDIR+GRE S
Sbjct: 121 GYDQSLRAWDCRSHSTEPIQIIDTFADSVMSVCLTKTEIIGGSVDGTVRTFDIRIGRETS 180

Query: 181 DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSD 240
           D+LGQPVNC+SMSNDGNCILA CLDSTLRLLDRSTGELLQEYKGH  KS+K DCCLTN+D
Sbjct: 181 DNLGQPVNCVSMSNDGNCILAGCLDSTLRLLDRSTGELLQEYKGHTNKSYKLDCCLTNTD 240

Query: 241 AHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
           AHVTG SEDG+IYFWDLVDASVV++FKAH+ VV
Sbjct: 241 AHVTGVSEDGFIYFWDLVDASVVSRFKAHTSVV 273

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074194|gb|ACJ85457.1| unknown [Medicago truncatula] gi|388501760|gb|AFK38946.1| unknown [Medicago truncatula]

 Score =  505 bits (1301), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 238/273 (87%), Positives = 255/273 (93%)

Query: 1   MSVSDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG 60
           MSV DLPR E NVLKGHEG VLAARFN DGNY LSCGKDRTIRLWNPHRGIHIKTYKSHG
Sbjct: 1   MSVEDLPRKEVNVLKGHEGGVLAARFNSDGNYILSCGKDRTIRLWNPHRGIHIKTYKSHG 60

Query: 61  REVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSA 120
           REVRDVHVT DNSKL SCGGDRQ++YWDV+TGRVIRKFRGH+ EVN VKFNEYSSVVVSA
Sbjct: 61  REVRDVHVTTDNSKLCSCGGDRQVYYWDVATGRVIRKFRGHDGEVNGVKFNEYSSVVVSA 120

Query: 121 GYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELS 180
           GYDQSLRAWDCRSHSTEPIQIID+F DSVMSVCLTKTEIIGGSVD TVRTFD+R+GRE+S
Sbjct: 121 GYDQSLRAWDCRSHSTEPIQIIDTFADSVMSVCLTKTEIIGGSVDETVRTFDMRIGREIS 180

Query: 181 DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSD 240
           D LGQPVNCISMSNDGNCILA CLDST+RLLDR+TGELLQEYKGH  KS+K DCCLTN+D
Sbjct: 181 DSLGQPVNCISMSNDGNCILAGCLDSTVRLLDRTTGELLQEYKGHTNKSYKLDCCLTNTD 240

Query: 241 AHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
           AHVTGGSEDG++YFWDLVDASVV+KF+AH+ VV
Sbjct: 241 AHVTGGSEDGFVYFWDLVDASVVSKFRAHTSVV 273

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512795|ref|XP_003525101.1| PREDICTED: WD repeat domain-containing protein 83-like [Glycine max]

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 239/274 (87%), Positives = 255/274 (93%), Gaps = 1/274 (0%)

Query: 1   MSV-SDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSH 59
           MSV +D+P  E NVLKGHEG VLAARFN DGNY LSCGKDRTIRLWNPHRGIHIKTYKSH
Sbjct: 1   MSVKNDVPGKEVNVLKGHEGGVLAARFNTDGNYVLSCGKDRTIRLWNPHRGIHIKTYKSH 60

Query: 60  GREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVS 119
            REVRDVHVT DNSKL SCGGDRQIFYWDV+TGRVIRKFRGH+ EVN VKFNEYSSVVVS
Sbjct: 61  AREVRDVHVTQDNSKLCSCGGDRQIFYWDVATGRVIRKFRGHDGEVNGVKFNEYSSVVVS 120

Query: 120 AGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGREL 179
           AGYDQSLRAWDCRSHSTEPIQIID+F DSVMSVCLTKTEIIGGSVDGTVRTFDIR+GRE+
Sbjct: 121 AGYDQSLRAWDCRSHSTEPIQIIDTFADSVMSVCLTKTEIIGGSVDGTVRTFDIRIGREI 180

Query: 180 SDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNS 239
           SD+LGQ VNC+SMSNDGNCILA CLDSTLRLLDRSTGELLQEYKGH  KS+K DCCLTN+
Sbjct: 181 SDNLGQSVNCVSMSNDGNCILAGCLDSTLRLLDRSTGELLQEYKGHTNKSYKLDCCLTNT 240

Query: 240 DAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
           DAHVTGGSEDG+IYFWDLVDASVV++F+AH+ VV
Sbjct: 241 DAHVTGGSEDGFIYFWDLVDASVVSRFRAHTSVV 274

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18424859|ref|NP_568993.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|15028247|gb|AAK76712.1| unknown protein [Arabidopsis thaliana] gi|21281169|gb|AAM45004.1| unknown protein [Arabidopsis thaliana] gi|332010561|gb|AED97944.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 225/273 (82%), Positives = 253/273 (92%)

Query: 1   MSVSDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG 60
           MS ++LP  EA++LKGHEGAVLAARFNGDGNY L+CGKDRTIRLWNPHRGI IKTYKSHG
Sbjct: 1   MSATELPTKEAHILKGHEGAVLAARFNGDGNYALTCGKDRTIRLWNPHRGILIKTYKSHG 60

Query: 61  REVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSA 120
           REVRDVHVT+DN+K  SCGGDRQ++YWDVSTGRVIRKFRGH+ EVNAVKFN+ SSVVVSA
Sbjct: 61  REVRDVHVTSDNAKFCSCGGDRQVYYWDVSTGRVIRKFRGHDGEVNAVKFNDSSSVVVSA 120

Query: 121 GYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELS 180
           G+D+SLR WDCRSHS EP+QIID+F D+VMSV LTKTEIIGGSVDGTVRTFD+R+GRE+S
Sbjct: 121 GFDRSLRVWDCRSHSVEPVQIIDTFLDTVMSVVLTKTEIIGGSVDGTVRTFDMRIGREMS 180

Query: 181 DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSD 240
           D+LGQPVNCIS+SNDGNC+LA CLDSTLRLLDR+TGELLQ YKGHI KSFKTDCCLTNSD
Sbjct: 181 DNLGQPVNCISISNDGNCVLAGCLDSTLRLLDRTTGELLQVYKGHISKSFKTDCCLTNSD 240

Query: 241 AHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
           AHV GGSEDG ++FWDLVDA V++KF+AH LVV
Sbjct: 241 AHVIGGSEDGLVFFWDLVDAKVLSKFRAHDLVV 273

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10177204|dbj|BAB10306.1| unnamed protein product [Arabidopsis thaliana]

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 224/272 (82%), Positives = 252/272 (92%)

Query: 1   MSVSDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG 60
           MS ++LP  EA++LKGHEGAVLAARFNGDGNY L+CGKDRTIRLWNPHRGI IKTYKSHG
Sbjct: 1   MSATELPTKEAHILKGHEGAVLAARFNGDGNYALTCGKDRTIRLWNPHRGILIKTYKSHG 60

Query: 61  REVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSA 120
           REVRDVHVT+DN+K  SCGGDRQ++YWDVSTGRVIRKFRGH+ EVNAVKFN+ SSVVVSA
Sbjct: 61  REVRDVHVTSDNAKFCSCGGDRQVYYWDVSTGRVIRKFRGHDGEVNAVKFNDSSSVVVSA 120

Query: 121 GYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELS 180
           G+D+SLR WDCRSHS EP+QIID+F D+VMSV LTKTEIIGGSVDGTVRTFD+R+GRE+S
Sbjct: 121 GFDRSLRVWDCRSHSVEPVQIIDTFLDTVMSVVLTKTEIIGGSVDGTVRTFDMRIGREMS 180

Query: 181 DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSD 240
           D+LGQPVNCIS+SNDGNC+LA CLDSTLRLLDR+TGELLQ YKGHI KSFKTDCCLTNSD
Sbjct: 181 DNLGQPVNCISISNDGNCVLAGCLDSTLRLLDRTTGELLQVYKGHISKSFKTDCCLTNSD 240

Query: 241 AHVTGGSEDGYIYFWDLVDASVVAKFKAHSLV 272
           AHV GGSEDG ++FWDLVDA V++KF+AH LV
Sbjct: 241 AHVIGGSEDGLVFFWDLVDAKVLSKFRAHDLV 272

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297794067|ref|XP_002864918.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297310753|gb|EFH41177.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 224/272 (82%), Positives = 252/272 (92%)

Query: 2   SVSDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGR 61
           + ++LP  EA++LKGHEGAVLAARFNGDGNY L+CGKDRTIRLWNPHRGI IKTYKSHGR
Sbjct: 3   AAAELPTKEAHILKGHEGAVLAARFNGDGNYALTCGKDRTIRLWNPHRGILIKTYKSHGR 62

Query: 62  EVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAG 121
           EVRDVHVT+DN+K  SCGGDRQ++YWDVSTGRVIRKFRGH+ EVNAVKFN+ SSVVVSAG
Sbjct: 63  EVRDVHVTSDNAKFCSCGGDRQVYYWDVSTGRVIRKFRGHDGEVNAVKFNDSSSVVVSAG 122

Query: 122 YDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSD 181
           +D+SLR WDCRSHS EP+QIID+F D+VMSV LTKTEIIGGSVDGTVRTFD+R+GRE+SD
Sbjct: 123 FDRSLRVWDCRSHSVEPVQIIDTFLDTVMSVVLTKTEIIGGSVDGTVRTFDMRIGREMSD 182

Query: 182 DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDA 241
           +LGQPVNCIS+SNDGNC+LA CLDSTLRLLDR+TGELLQ YKGHI KSFKTDCCLTNSDA
Sbjct: 183 NLGQPVNCISISNDGNCVLAGCLDSTLRLLDRTTGELLQVYKGHISKSFKTDCCLTNSDA 242

Query: 242 HVTGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
           HV GGSEDG ++FWDLVDA VV+KF+AH LVV
Sbjct: 243 HVIGGSEDGLVFFWDLVDAKVVSKFRAHDLVV 274

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
TAIR|locus:2176085	299	AT5G64730 "AT5G64730" [Arabido	0.985	0.913	0.824	1.4e-126
RGD|1306947	315	Wdr83 "WD repeat domain 83" [R	0.981	0.863	0.514	1e-75
UNIPROTKB|Q9BRX9	315	WDR83 "WD repeat domain-contai	0.981	0.863	0.511	2.7e-75
MGI|MGI:1915086	315	Wdr83 "WD repeat domain contai	0.981	0.863	0.507	9.3e-75
UNIPROTKB|Q0VCN2	315	MORG1 "Mitogen-activated prote	0.981	0.863	0.5	1.2e-74
UNIPROTKB|E2RRL3	315	WDR83 "Uncharacterized protein	0.981	0.863	0.5	1.9e-74
UNIPROTKB|F1SEX9	311	WDR83 "Uncharacterized protein	0.981	0.874	0.5	3.1e-74
ZFIN|ZDB-GENE-040718-126	315	wdr83 "WD repeat domain contai	0.978	0.860	0.483	4.1e-72
WB|WBGene00018014	305	F33G12.2 [Caenorhabditis elega	0.989	0.898	0.427	1.5e-60
UNIPROTKB|Q19986	305	F33G12.2 "Protein F33G12.2" [C	0.989	0.898	0.427	1.5e-60

TAIR|locus:2176085 AT5G64730 "AT5G64730" [Arabidopsis thaliana (taxid:3702)]

 Score = 1243 (442.6 bits), Expect = 1.4e-126, P = 1.4e-126
 Identities = 225/273 (82%), Positives = 253/273 (92%)

Query:     1 MSVSDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG 60
             MS ++LP  EA++LKGHEGAVLAARFNGDGNY L+CGKDRTIRLWNPHRGI IKTYKSHG
Sbjct:     1 MSATELPTKEAHILKGHEGAVLAARFNGDGNYALTCGKDRTIRLWNPHRGILIKTYKSHG 60

Query:    61 REVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSA 120
             REVRDVHVT+DN+K  SCGGDRQ++YWDVSTGRVIRKFRGH+ EVNAVKFN+ SSVVVSA
Sbjct:    61 REVRDVHVTSDNAKFCSCGGDRQVYYWDVSTGRVIRKFRGHDGEVNAVKFNDSSSVVVSA 120

Query:   121 GYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELS 180
             G+D+SLR WDCRSHS EP+QIID+F D+VMSV LTKTEIIGGSVDGTVRTFD+R+GRE+S
Sbjct:   121 GFDRSLRVWDCRSHSVEPVQIIDTFLDTVMSVVLTKTEIIGGSVDGTVRTFDMRIGREMS 180

Query:   181 DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSD 240
             D+LGQPVNCIS+SNDGNC+LA CLDSTLRLLDR+TGELLQ YKGHI KSFKTDCCLTNSD
Sbjct:   181 DNLGQPVNCISISNDGNCVLAGCLDSTLRLLDRTTGELLQVYKGHISKSFKTDCCLTNSD 240

Query:   241 AHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
             AHV GGSEDG ++FWDLVDA V++KF+AH LVV
Sbjct:   241 AHVIGGSEDGLVFFWDLVDAKVLSKFRAHDLVV 273

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

RGD|1306947 Wdr83 "WD repeat domain 83" [Rattus norvegicus (taxid:10116)]

 Score = 763 (273.6 bits), Expect = 1.0e-75, P = 1.0e-75
 Identities = 140/272 (51%), Positives = 184/272 (67%)

Query:     5 DLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVR 64
             +LPR +   L   +GAV A RFN DGNYCL+CG D+T++LWNP RG  ++TY  HG EV 
Sbjct:    12 ELPRKQLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVL 71

Query:    65 DVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQ 124
             D   + DNS L S GGD+ +  WDV+TG+V+RKFRGH  +VN V+FNE ++V++S   D 
Sbjct:    72 DAAGSFDNSHLCSGGGDKTVVLWDVATGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDS 131

Query:   125 SLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLG 184
             S+R WDCRS   EP+Q +D  +D + SV ++  EI+ GSVDG VR +D+R+G+  SD +G
Sbjct:   132 SVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEILAGSVDGRVRRYDLRMGQVTSDYVG 191

Query:   185 QPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVT 244
              P+ C   S DG C L S LDSTLRLLD+ TGELL EY GH  + +K DCCL+  D HV 
Sbjct:   192 SPITCTCFSRDGQCTLISSLDSTLRLLDKDTGELLGEYVGHKNQKYKLDCCLSERDTHVV 251

Query:   245 GGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL 276
               SEDG ++FWDLV+ S+       S VV+ L
Sbjct:   252 SCSEDGKVFFWDLVEGSLALALPVGSNVVQSL 283

GO:0000375 "RNA splicing, via transesterification reactions" evidence=IEA;ISO

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISO

GO:0005681 "spliceosomal complex" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IDA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO

UNIPROTKB|Q9BRX9 WDR83 "WD repeat domain-containing protein 83" [Homo sapiens (taxid:9606)]

 Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
 Identities = 139/272 (51%), Positives = 184/272 (67%)

Query:     5 DLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVR 64
             +LP+     L   +GAV A RFN DGNYCL+CG D+T++LWNP RG  ++TY  HG EV 
Sbjct:    12 ELPQKRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVL 71

Query:    65 DVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQ 124
             D   + DNS L S GGD+ +  WDV++G+V+RKFRGH  +VN V+FNE ++V++S   D 
Sbjct:    72 DAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDS 131

Query:   125 SLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLG 184
             S+R WDCRS   EP+Q +D  +D V SV ++  EI+ GSVDG VR +D+R+G+  SD +G
Sbjct:   132 SIRCWDCRSRRPEPVQTLDEARDGVSSVKVSDHEILAGSVDGRVRRYDLRMGQLFSDYVG 191

Query:   185 QPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVT 244
              P+ C   S DG C L S LDSTLRLLD+ TGELL EYKGH  + +K DCCL+  D HV 
Sbjct:   192 SPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYKGHKNQEYKLDCCLSERDTHVV 251

Query:   245 GGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL 276
               SEDG ++FWDLV+ ++       S VV+ L
Sbjct:   252 SCSEDGKVFFWDLVEGALALALPVGSGVVQSL 283

GO:0005737 "cytoplasm" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;IDA

GO:0000375 "RNA splicing, via transesterification reactions" evidence=IDA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

MGI|MGI:1915086 Wdr83 "WD repeat domain containing 83" [Mus musculus (taxid:10090)]

 Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
 Identities = 138/272 (50%), Positives = 183/272 (67%)

Query:     5 DLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVR 64
             +LP+     L   +GAV A RFN DGNYCL+CG D+T++LWNP RG  ++TY  HG EV 
Sbjct:    12 ELPQKRMKTLDCSQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVL 71

Query:    65 DVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQ 124
             D   + DNS L S GGD+ +  WDV+TG+V+RKFRGH  +VN V+FNE ++V++S   D 
Sbjct:    72 DAAGSFDNSHLCSGGGDKTVVLWDVATGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDS 131

Query:   125 SLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLG 184
             S+R WDCRS   EP+Q +D  +D + SV ++  EI+ GSVDG VR +D+R+G+  SD +G
Sbjct:   132 SVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEILAGSVDGRVRRYDLRMGQVSSDYVG 191

Query:   185 QPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVT 244
              P+ C   S DG C L S LDSTLRLLD+ TGELL EY GH  + +K DCCL+  D HV 
Sbjct:   192 SPITCTCFSRDGQCTLISSLDSTLRLLDKDTGELLGEYVGHKNQQYKLDCCLSERDTHVV 251

Query:   245 GGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL 276
               SEDG ++FWDLV+ ++       S VV+ L
Sbjct:   252 SCSEDGKVFFWDLVEGALALALPVGSNVVQSL 283

GO:0000375 "RNA splicing, via transesterification reactions" evidence=ISO

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

UNIPROTKB|Q0VCN2 MORG1 "Mitogen-activated protein kinase organizer 1" [Bos taurus (taxid:9913)]

 Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
 Identities = 136/272 (50%), Positives = 183/272 (67%)

Query:     5 DLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVR 64
             +LP+     L   +GAV A RFN DGNYCL+CG D+T++LWNP RG  ++TY  HG EV 
Sbjct:    12 ELPQKRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVL 71

Query:    65 DVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQ 124
             D   + DNS L S GGD+ +  WDV++G+V+RKFRGH  +VN V+FNE ++V++S   D 
Sbjct:    72 DAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDS 131

Query:   125 SLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLG 184
             ++R WDCRS   EP+Q +D  +D + SV ++  E++ GSVDG VR +D+R+G+  SD +G
Sbjct:   132 TIRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVG 191

Query:   185 QPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVT 244
              P+ CI  S DG C L S LDSTLRLLD+ TGELL EY GH  K +K DCCL+  D HV 
Sbjct:   192 SPITCICFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNKEYKLDCCLSERDTHVV 251

Query:   245 GGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL 276
               SEDG ++FWDLV+ ++         VV+ L
Sbjct:   252 SCSEDGKVFFWDLVEGALALALPVGPGVVQSL 283

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0000375 "RNA splicing, via transesterification reactions" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

UNIPROTKB|E2RRL3 WDR83 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
 Identities = 136/272 (50%), Positives = 182/272 (66%)

Query:     5 DLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVR 64
             +LP+     L   +GAV A RFN DGNYCL+CG D+T++LWNP RG  ++TY  HG EV 
Sbjct:    12 ELPQKRVKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVL 71

Query:    65 DVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQ 124
             D   + DNS L S GGD+ +  WDV++G+V+RKFRGH  +VN V+FNE ++V++S   D 
Sbjct:    72 DAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDS 131

Query:   125 SLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLG 184
             S+R WDCRS   EP+Q +D  +D + SV ++  E++ GSVDG VR +D+R+G+  SD +G
Sbjct:   132 SIRCWDCRSRRPEPVQTLDEARDGISSVKVSDHEVLSGSVDGRVRRYDLRMGQLFSDYVG 191

Query:   185 QPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVT 244
              P+ C   S DG C L S LDSTLRLLD+ TGELL EY GH  + +K DCCL+  D HV 
Sbjct:   192 SPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVV 251

Query:   245 GGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL 276
               SEDG +YFWDLV+ ++         VV+ L
Sbjct:   252 SCSEDGKVYFWDLVEGALALALPVGPGVVQSL 283

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0000375 "RNA splicing, via transesterification reactions" evidence=IEA

UNIPROTKB|F1SEX9 WDR83 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 749 (268.7 bits), Expect = 3.1e-74, P = 3.1e-74
 Identities = 136/272 (50%), Positives = 182/272 (66%)

Query:     5 DLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVR 64
             +LP+     L   +GAV A RFN DGNYCL+CG D+T++LWNP RG  ++TY  HG EV 
Sbjct:    12 ELPQKRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVL 71

Query:    65 DVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQ 124
             D   + DNS L S GGD+ +  WDV++G+V+RKFRGH  +VN V+FNE ++V++S   D 
Sbjct:    72 DAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDS 131

Query:   125 SLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLG 184
             S+R WDCRS   EP+Q +D  +D + SV ++  E++ GSVDG VR +D+R+G+  SD +G
Sbjct:   132 SVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVG 191

Query:   185 QPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVT 244
              P+ C   S DG C L S LDSTLRLLD+ TGELL EY GH  + +K DCCL+  D HV 
Sbjct:   192 SPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVV 251

Query:   245 GGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL 276
               SEDG ++FWDLV+  +V        VV+ L
Sbjct:   252 SCSEDGKVFFWDLVEGVLVLALPVGPSVVQSL 283

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0000375 "RNA splicing, via transesterification reactions" evidence=IEA

ZFIN|ZDB-GENE-040718-126 wdr83 "WD repeat domain containing 83" [Danio rerio (taxid:7955)]

 Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
 Identities = 131/271 (48%), Positives = 184/271 (67%)

Query:     6 LPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRD 65
             LP+     +   +GAV A RFN DGNY L+CG D++++LW+  RG  +KTY  HG EV D
Sbjct:    13 LPQHLWRTVDCQQGAVRAVRFNADGNYLLTCGSDKSLKLWSVSRGTLLKTYSGHGYEVLD 72

Query:    66 VHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQS 125
                + DNS+L SC  D+ +  WDV++G+V RK RGH  +VN V+FNE ++V++S   D +
Sbjct:    73 ADGSYDNSQLCSCSSDKTVILWDVASGQVTRKLRGHAGKVNCVQFNEEATVMLSGSIDGT 132

Query:   126 LRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLGQ 185
             +R WD RS   EPIQI+D  QD + S+ +++ E++ GSVDG VR +D+R+G+   D +G 
Sbjct:   133 VRCWDTRSRRMEPIQILDESQDGISSLKVSEHELLTGSVDGRVRRYDLRMGQLQVDYIGS 192

Query:   186 PVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTG 245
             P+ C+  S DG C L+S LDST+RLLD+STGE+L EY GH+ K +K DCCLT+ D HV  
Sbjct:   193 PITCVCFSRDGQCTLSSSLDSTVRLLDKSTGEMLGEYSGHVNKGYKLDCCLTDKDTHVLS 252

Query:   246 GSEDGYIYFWDLVDASVVAKFKAHSLVVKLL 276
              SEDG++Y+WDLV+ S+  K      VV+ L
Sbjct:   253 CSEDGHVYYWDLVEGSLTLKLPVGKAVVQSL 283

GO:0005737 "cytoplasm" evidence=IEA

WB|WBGene00018014 F33G12.2 [Caenorhabditis elegans (taxid:6239)]

 Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
 Identities = 117/274 (42%), Positives = 173/274 (63%)

Query:     3 VSDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGRE 62
             +S  P   A  +   +GAV A R+N DGNYC++CG D+T++LWNP +   +KTY   G E
Sbjct:     1 MSKCPTVRARAIDCKQGAVRAVRYNVDGNYCVTCGSDKTVKLWNPLKSSLLKTYSGTGNE 60

Query:    63 VRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGY 122
             V D   ++DNS++ + G DR    +DV TG+ +R++R H ++VNAV FNE SSVV S   
Sbjct:    61 VLDAASSSDNSQIAAGGADRACTVFDVETGKQLRRWRTHGAQVNAVAFNEESSVVFSGSM 120

Query:   123 DQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDD 182
             D +++A+DCRS S +PIQI +   D ++S+ +   EI+ GS DG  R + IR G    D 
Sbjct:   121 DCTMQAFDCRSRSEKPIQIFNESTDGILSIDVNGHEIVAGSADGNYRVYSIRDGNMTVDY 180

Query:   183 LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAH 242
             +G  VN +S + D NC+LA  +   +RL+D+S+G+LL  YKGH    +K DC +  S  H
Sbjct:   181 MGDSVNSVSFTPDSNCLLAGVMGGIVRLIDKSSGKLLASYKGHQNTEYKLDCRVLQSIEH 240

Query:   243 VTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL 276
             V  GSEDG++Y + L+D+ +V+K +  S V+  L
Sbjct:   241 VASGSEDGFVYVYSLLDSHIVSKLEHPSKVIHSL 274

GO:0019915 "lipid storage" evidence=IMP

UNIPROTKB|Q19986 F33G12.2 "Protein F33G12.2" [Caenorhabditis elegans (taxid:6239)]

 Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
 Identities = 117/274 (42%), Positives = 173/274 (63%)

Query:     3 VSDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGRE 62
             +S  P   A  +   +GAV A R+N DGNYC++CG D+T++LWNP +   +KTY   G E
Sbjct:     1 MSKCPTVRARAIDCKQGAVRAVRYNVDGNYCVTCGSDKTVKLWNPLKSSLLKTYSGTGNE 60

Query:    63 VRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGY 122
             V D   ++DNS++ + G DR    +DV TG+ +R++R H ++VNAV FNE SSVV S   
Sbjct:    61 VLDAASSSDNSQIAAGGADRACTVFDVETGKQLRRWRTHGAQVNAVAFNEESSVVFSGSM 120

Query:   123 DQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDD 182
             D +++A+DCRS S +PIQI +   D ++S+ +   EI+ GS DG  R + IR G    D 
Sbjct:   121 DCTMQAFDCRSRSEKPIQIFNESTDGILSIDVNGHEIVAGSADGNYRVYSIRDGNMTVDY 180

Query:   183 LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAH 242
             +G  VN +S + D NC+LA  +   +RL+D+S+G+LL  YKGH    +K DC +  S  H
Sbjct:   181 MGDSVNSVSFTPDSNCLLAGVMGGIVRLIDKSSGKLLASYKGHQNTEYKLDCRVLQSIEH 240

Query:   243 VTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL 276
             V  GSEDG++Y + L+D+ +V+K +  S V+  L
Sbjct:   241 VASGSEDGFVYVYSLLDSHIVSKLEHPSKVIHSL 274

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9BRX9	WDR83_HUMAN	No assigned EC number	0.5091	0.9855	0.8666	yes	no
Q9DAJ4	WDR83_MOUSE	No assigned EC number	0.5036	0.9891	0.8698	yes	no
Q6DH44	WDR83_DANRE	No assigned EC number	0.4820	0.9747	0.8571	yes	no
Q5XGI5	WDR83_XENTR	No assigned EC number	0.4963	0.9783	0.8630	yes	no
Q5BLX8	WDR83_RAT	No assigned EC number	0.5109	0.9891	0.8698	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_I2540	hypothetical protein (300 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00070994	hypothetical protein (462 aa)			•						0.501
	gw1.XII.1842.1	hypothetical protein (346 aa)			•						0.498
	gw1.IX.1982.1	hypothetical protein (424 aa)			•						0.495
	gw1.5330.2.1	annotation not avaliable (237 aa)			•						0.495
	eugene3.00140830	hypothetical protein (166 aa)			•						0.492
	eugene3.00180717	hypothetical protein (345 aa)			•						0.484
	eugene3.00160385	hypothetical protein (218 aa)			•						0.484
	grail3.0002003502	hypothetical protein (410 aa)			•						0.475
	gw1.II.1552.1	hypothetical protein (409 aa)			•						0.467
	gw1.XII.1531.1	hypothetical protein (314 aa)			•						0.461

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	277
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-57
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-34
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-32
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-29
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-28
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-25
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-24
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-20
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-15
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	5e-07
smart00320	40	smart00320, WD40, WD40 repeats	5e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-06
smart00320	40	smart00320, WD40, WD40 repeats	4e-06
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	9e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-05
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	3e-05
smart00320	40	smart00320, WD40, WD40 repeats	0.001
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.003

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  184 bits (469), Expect = 4e-57
 Identities = 82/262 (31%), Positives = 130/262 (49%), Gaps = 8/262 (3%)

Query: 13  VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
            LKGH G V    F+ DG    +   D TI++W+   G  ++T K H   VRDV  +AD 
Sbjct: 4   TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG 63

Query: 73  SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
           + L S   D+ I  WD+ TG  +R   GH S V++V F+    ++ S+  D++++ WD  
Sbjct: 64  TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE 123

Query: 133 SHSTEPIQIIDSFQDSVMSVCLTKTE--IIGGSVDGTVRTFDIRVGRELSDDLG--QPVN 188
             + + +  +    D V SV  +     +   S DGT++ +D+R G+ ++   G    VN
Sbjct: 124 --TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVN 181

Query: 189 CISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSE 248
            ++ S DG  +L+S  D T++L D STG+ L   +GH  ++       +     +  GSE
Sbjct: 182 SVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH--ENGVNSVAFSPDGYLLASGSE 239

Query: 249 DGYIYFWDLVDASVVAKFKAHS 270
           DG I  WDL     V     H+
Sbjct: 240 DGTIRVWDLRTGECVQTLSGHT 261

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  125 bits (315), Expect = 3e-34
 Identities = 56/205 (27%), Positives = 97/205 (47%), Gaps = 6/205 (2%)

Query: 10  EANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVT 69
               L GH   V +  F+ DG    S  +D+TI++W+   G  + T + H   V  V  +
Sbjct: 85  CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFS 144

Query: 70  ADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAW 129
            D + + S   D  I  WD+ TG+ +    GH  EVN+V F+     ++S+  D +++ W
Sbjct: 145 PDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW 204

Query: 130 DCRSHSTEPIQIIDSFQDSVMSVCLTKTE--IIGGSVDGTVRTFDIRVGRELSDDLG--Q 185
           D    + + +  +   ++ V SV  +     +  GS DGT+R +D+R G  +    G   
Sbjct: 205 DLS--TGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTN 262

Query: 186 PVNCISMSNDGNCILASCLDSTLRL 210
            V  ++ S DG  + +   D T+R+
Sbjct: 263 SVTSLAWSPDGKRLASGSADGTIRI 287

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  118 bits (298), Expect = 8e-32
 Identities = 55/162 (33%), Positives = 83/162 (51%), Gaps = 4/162 (2%)

Query: 13  VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
            L+GH   V +  F+ DG +  S  +D TI+LW+   G  + T   H  EV  V  + D 
Sbjct: 130 TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDG 189

Query: 73  SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
            KL+S   D  I  WD+STG+ +   RGHE+ VN+V F+    ++ S   D ++R WD  
Sbjct: 190 EKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWD-- 247

Query: 133 SHSTEPIQIIDSFQDSVMSVCL--TKTEIIGGSVDGTVRTFD 172
             + E +Q +    +SV S+        +  GS DGT+R +D
Sbjct: 248 LRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  113 bits (284), Expect = 1e-29
 Identities = 57/223 (25%), Positives = 94/223 (42%), Gaps = 8/223 (3%)

Query: 52  HIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFN 111
             +T K H   V  V  + D   L +  GD  I  WD+ TG ++R  +GH   V  V  +
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 112 EYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE--IIGGSVDGTVR 169
              + + S   D+++R WD    + E ++ +      V SV  +     +   S D T++
Sbjct: 61  ADGTYLASGSSDKTIRLWD--LETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIK 118

Query: 170 TFDIRVGRELSDDLGQ--PVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHIC 227
            +D+  G+ L+   G    VN ++ S DG  + +S  D T++L D  TG+ +    GH  
Sbjct: 119 VWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGH-- 176

Query: 228 KSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHS 270
                    +     +   S DG I  WDL     +   + H 
Sbjct: 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE 219

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  110 bits (276), Expect = 8e-28
 Identities = 87/280 (31%), Positives = 131/280 (46%), Gaps = 15/280 (5%)

Query: 7   PRTEANVLKGHEGAVLAARFNGDGNYCLSCG-KDRTIRLWNPHRGIHIKTYKSHGREVRD 65
           P      L+GH  +V +  F+ DG    S    D TI+LW+   G  + T   H   V  
Sbjct: 144 PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSS 203

Query: 66  VHVTADNSKLI-SCGGDRQIFYWDVSTGRVIR-KFRGHESEVNAVKFNEYSSVVVSAGYD 123
           +  + D   LI S   D  I  WD+STG+++R    GH   V +  F+   S++ S   D
Sbjct: 204 LAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSD 262

Query: 124 QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE--IIGGSVDGTVRTFDIRVGRELS- 180
            ++R WD RS S   ++ +     SV+SV  +     +  GS DGTVR +D+  G+ LS 
Sbjct: 263 GTIRLWDLRSSS-SLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSS 321

Query: 181 ---DDLGQPVNCISMSNDGNCILASC-LDSTLRLLDRSTGELLQEYKGHICKSFKTDCCL 236
                   PV+ +S S DG+ +++    D T+RL D  TG+ L+  +GH   S       
Sbjct: 322 LTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH---SNVLSVSF 378

Query: 237 TNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL 276
           +     V+ GS DG +  WDL   S++     H+  V  L
Sbjct: 379 SPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSL 418

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  104 bits (260), Expect = 1e-25
 Identities = 73/251 (29%), Positives = 111/251 (44%), Gaps = 8/251 (3%)

Query: 13  VLKGHEGAVLAARFNGDGN-YCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTAD 71
            L GH   V +  F+ DG     S   D TIRLW+   G  +++  S   +      + D
Sbjct: 193 TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPD 252

Query: 72  NSKLISCGGDRQIFYWDVSTGR-VIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWD 130
            S L S   D  I  WD+ +   ++R   GH S V +V F+    ++ S   D ++R WD
Sbjct: 253 GSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWD 312

Query: 131 CRSHSTEPIQIIDSFQDSVMSVCLT---KTEIIGGSVDGTVRTFDIRVGREL-SDDLGQP 186
             +        +   +  V S+  +      + GGS DGT+R +D+R G+ L + +    
Sbjct: 313 LETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN 372

Query: 187 VNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGG 246
           V  +S S DG  + +   D T+RL D STG LL+   GH  +        +     +  G
Sbjct: 373 VLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTS--LDFSPDGKSLASG 430

Query: 247 SEDGYIYFWDL 257
           S D  I  WDL
Sbjct: 431 SSDNTIRLWDL 441

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  102 bits (253), Expect = 1e-24
 Identities = 77/269 (28%), Positives = 126/269 (46%), Gaps = 17/269 (6%)

Query: 2   SVSDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKT--YKSH 59
           S+  LP   + +L+GHE ++ +  F+ DG   LS   D TI+LW+   G  +       H
Sbjct: 49  SLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLH 108

Query: 60  GREVRDVHVTADNSKLISCGG---DRQIFYWDVST-GRVIRKFRGHESEVNAVKFNEYSS 115
              V  + +++ +   I       D  +  WD+ST G++IR   GH   V ++ F+    
Sbjct: 109 DSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGK 168

Query: 116 VVVSAG-YDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE---IIGGSVDGTVRTF 171
           ++ S    D +++ WD R  + +P+  +    D V S+  +      I  GS DGT+R +
Sbjct: 169 LLASGSSLDGTIKLWDLR--TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLW 226

Query: 172 DIRVGRELSDDL-GQPVNCIS-MSNDGNCILASCLDSTLRLLD-RSTGELLQEYKGHICK 228
           D+  G+ L   L G   + +S  S DG+ + +   D T+RL D RS+  LL+   GH   
Sbjct: 227 DLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH--S 284

Query: 229 SFKTDCCLTNSDAHVTGGSEDGYIYFWDL 257
           S       +     +  GS DG +  WDL
Sbjct: 285 SSVLSVAFSPDGKLLASGSSDGTVRLWDL 313

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 90.5 bits (223), Expect = 1e-20
 Identities = 62/211 (29%), Positives = 97/211 (45%), Gaps = 12/211 (5%)

Query: 13  VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG-IHIKTYKSHGREVRDVHVTAD 71
            L GH  +V+++ F+ DG+   S   D TIRLW+       ++T   H   V  V  + D
Sbjct: 237 TLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPD 295

Query: 72  NSKLISCGGDRQIFYWDVSTGRVI--RKFRGHESEVNAVKFNEY-SSVVVSAGYDQSLRA 128
              L S   D  +  WD+ TG+++     +GHE  V+++ F+   S +V     D ++R 
Sbjct: 296 GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRL 355

Query: 129 WDCRSHSTEPIQIIDSFQDSVMSVCLTKTEII--GGSVDGTVRTFDIRVGREL--SDDLG 184
           WD R+              +V+SV  +    +   GS DGTVR +D+  G  L   D   
Sbjct: 356 WDLRTGKPL---KTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT 412

Query: 185 QPVNCISMSNDGNCILASCLDSTLRLLDRST 215
             V  +  S DG  + +   D+T+RL D  T
Sbjct: 413 SRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 75.5 bits (184), Expect = 2e-15
 Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 8/168 (4%)

Query: 12  NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWN--PHRGIHIKTYKSHGREVRDVHVT 69
             L GH  +VL+  F+ DG    S   D T+RLW+    + +   T K H   V  +  +
Sbjct: 278 RTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFS 337

Query: 70  ADNSKLISCGG-DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRA 128
            D S L+S G  D  I  WD+ TG+ ++   GH S V +V F+    VV S   D ++R 
Sbjct: 338 PDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSPDGRVVSSGSTDGTVRL 396

Query: 129 WDCRSHSTEPIQIIDSFQDSVMSVCLTKTE--IIGGSVDGTVRTFDIR 174
           WD    +   ++ +D     V S+  +     +  GS D T+R +D++
Sbjct: 397 WD--LSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 45.0 bits (107), Expect = 5e-07
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWN 46
           LKGH G V +  F+ DGN   S   D T+R+W+
Sbjct: 6  TLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 45.0 bits (107), Expect = 5e-07
 Identities = 16/35 (45%), Positives = 20/35 (57%)

Query: 12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWN 46
            LKGH G V +  F+ DG Y  S   D TI+LW+
Sbjct: 6  KTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 48.5 bits (114), Expect = 2e-06
 Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 1/112 (0%)

Query: 1   MSVSDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG 60
           + + DL   +          VL+  F+ DG    S   D T+RLW+   G  ++    H 
Sbjct: 353 IRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT 412

Query: 61  REVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNE 112
             V  +  + D   L S   D  I  WD+ T      F   + +V A K ++
Sbjct: 413 SRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSF-SPDGKVLASKSSD 463

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 42.7 bits (101), Expect = 4e-06
 Identities = 10/40 (25%), Positives = 21/40 (52%)

Query: 91  TGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWD 130
           +G +++  +GH   V +V F+     + S   D +++ WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 46.0 bits (109), Expect = 9e-06
 Identities = 38/174 (21%), Positives = 70/174 (40%), Gaps = 11/174 (6%)

Query: 14  LKGHEGAVLAARFNGDGNYCL-SCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
           L+GH   V    F+      L S G D  + +W+  RG  ++  K H  ++  +    D 
Sbjct: 121 LQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG 180

Query: 73  SKLISCGGDRQIFYWDVSTGRVIRKFRGHESE-----VNAVKFNEYSSVVVSAGYDQSLR 127
           S L +   D+++   D   G ++     H S      + A + +   ++  S    + + 
Sbjct: 181 SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIM 240

Query: 128 AWDCRSHSTEPIQIIDSFQDSVMSVCL----TKTEIIGGSVDGTVRTFDIRVGR 177
            WD R  ++ P   +D  Q S + +      T    IG   +G +R F++   R
Sbjct: 241 LWDTRKMAS-PYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293

Length = 493

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 40.4 bits (95), Expect = 2e-05
 Identities = 12/39 (30%), Positives = 23/39 (58%)

Query: 92  GRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWD 130
           G+++R  +GH   V +V F+   +++ S   D ++R WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 44.9 bits (106), Expect = 3e-05
 Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 11/131 (8%)

Query: 13  VLKGHEGAVLAARFNG-DGNYCLSCGKDRTIRLWN-PHRGI------HIKTYKSHGREVR 64
           +L G EG ++   FN  D     +  +D TI  W  P  G+       I   + H ++V 
Sbjct: 70  ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVG 129

Query: 65  DV--HVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGY 122
            V  H +A N  L S G D  +  WDV  G+ +   + H  ++ ++++N   S++ +   
Sbjct: 130 IVSFHPSAMNV-LASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSK 188

Query: 123 DQSLRAWDCRS 133
           D+ L   D R 
Sbjct: 189 DKKLNIIDPRD 199

Length = 493

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 35.8 bits (83), Expect = 0.001
 Identities = 14/39 (35%), Positives = 16/39 (41%)

Query: 50 GIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWD 88
          G  +KT K H   V  V  + D   L S   D  I  WD
Sbjct: 2  GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 34.3 bits (79), Expect = 0.003
 Identities = 12/39 (30%), Positives = 17/39 (43%)

Query: 50 GIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWD 88
          G  ++T K H   V  V  + D + L S   D  +  WD
Sbjct: 1  GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	277
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0294	362	consensus WD40 repeat-containing protein [Function	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0647	347	consensus mRNA export protein (contains WD40 repea	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.98
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.98
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.98
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.97
KOG0646	476	consensus WD40 repeat protein [General function pr	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG1273	405	consensus WD40 repeat protein [General function pr	99.96
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.96
KOG2096	420	consensus WD40 repeat protein [General function pr	99.96
KOG0267	825	consensus Microtubule severing protein katanin p80	99.96
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.95
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0643	327	consensus Translation initiation factor 3, subunit	99.95
KOG1274	933	consensus WD40 repeat protein [General function pr	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.94
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.94
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.94
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.94
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.94
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.94
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.94
KOG0646	476	consensus WD40 repeat protein [General function pr	99.94
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.94
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.94
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.94
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.94
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.93
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.93
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.93
KOG0639	705	consensus Transducin-like enhancer of split protei	99.93
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.93
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.93
KOG0267	825	consensus Microtubule severing protein katanin p80	99.93
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.93
KOG0639	705	consensus Transducin-like enhancer of split protei	99.93
KOG1539	910	consensus WD repeat protein [General function pred	99.93
KOG4328	498	consensus WD40 protein [Function unknown]	99.93
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.92
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.92
KOG2048	691	consensus WD40 repeat protein [General function pr	99.92
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.92
KOG1539	910	consensus WD repeat protein [General function pred	99.91
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.91
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.91
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.91
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.91
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.9
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.9
KOG2055	514	consensus WD40 repeat protein [General function pr	99.9
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.9
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.89
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.89
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.88
KOG1334	559	consensus WD40 repeat protein [General function pr	99.88
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.87
KOG2096	420	consensus WD40 repeat protein [General function pr	99.87
KOG2048	691	consensus WD40 repeat protein [General function pr	99.87
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.87
KOG1273	405	consensus WD40 repeat protein [General function pr	99.87
KOG1274	933	consensus WD40 repeat protein [General function pr	99.87
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.87
KOG4227	609	consensus WD40 repeat protein [General function pr	99.87
COG2319	466	FOG: WD40 repeat [General function prediction only	99.87
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.87
KOG4328	498	consensus WD40 protein [Function unknown]	99.87
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.86
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.85
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.85
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.85
COG2319	466	FOG: WD40 repeat [General function prediction only	99.85
KOG1310	758	consensus WD40 repeat protein [General function pr	99.84
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.84
KOG2055	514	consensus WD40 repeat protein [General function pr	99.84
KOG1188	376	consensus WD40 repeat protein [General function pr	99.83
KOG0649	325	consensus WD40 repeat protein [General function pr	99.82
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.81
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.8
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.8
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.8
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.79
KOG1188	376	consensus WD40 repeat protein [General function pr	99.78
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.78
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.77
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.77
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.76
PRK01742	429	tolB translocation protein TolB; Provisional	99.76
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.76
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.76
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.75
PRK01742	429	tolB translocation protein TolB; Provisional	99.75
PRK11028	330	6-phosphogluconolactonase; Provisional	99.74
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.74
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.74
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.74
KOG1963	792	consensus WD40 repeat protein [General function pr	99.74
PRK11028	330	6-phosphogluconolactonase; Provisional	99.74
KOG0649	325	consensus WD40 repeat protein [General function pr	99.74
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.73
KOG1963	792	consensus WD40 repeat protein [General function pr	99.72
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.72
KOG1310	758	consensus WD40 repeat protein [General function pr	99.72
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.71
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.71
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.7
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.7
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.69
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.69
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.68
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.67
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.67
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.67
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.67
KOG2321	703	consensus WD40 repeat protein [General function pr	99.65
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.65
KOG4227	609	consensus WD40 repeat protein [General function pr	99.64
PRK03629	429	tolB translocation protein TolB; Provisional	99.63
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.62
PRK05137	435	tolB translocation protein TolB; Provisional	99.62
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.62
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.62
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.61
PRK04922	433	tolB translocation protein TolB; Provisional	99.61
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.6
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.6
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.59
PRK03629	429	tolB translocation protein TolB; Provisional	99.59
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.59
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.59
PRK02889	427	tolB translocation protein TolB; Provisional	99.58
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.58
PRK02889	427	tolB translocation protein TolB; Provisional	99.56
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.56
PRK04922	433	tolB translocation protein TolB; Provisional	99.54
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.54
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.51
PRK05137	435	tolB translocation protein TolB; Provisional	99.51
KOG2139	445	consensus WD40 repeat protein [General function pr	99.5
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.49
KOG2139	445	consensus WD40 repeat protein [General function pr	99.46
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.46
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.46
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.46
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.45
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.45
KOG4547	541	consensus WD40 repeat-containing protein [General	99.44
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.43
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.42
PRK00178	430	tolB translocation protein TolB; Provisional	99.42
KOG2321	703	consensus WD40 repeat protein [General function pr	99.4
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.39
PRK04792	448	tolB translocation protein TolB; Provisional	99.38
KOG4547	541	consensus WD40 repeat-containing protein [General	99.37
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.35
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.35
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.35
KOG1334	559	consensus WD40 repeat protein [General function pr	99.34
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.34
KOG2315	566	consensus Predicted translation initiation factor	99.33
PRK00178	430	tolB translocation protein TolB; Provisional	99.32
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.32
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.31
PRK04792	448	tolB translocation protein TolB; Provisional	99.3
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.29
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.28
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.27
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.26
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.23
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.23
PRK01029	428	tolB translocation protein TolB; Provisional	99.21
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.19
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.15
KOG2695	425	consensus WD40 repeat protein [General function pr	99.14
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.1
PRK01029	428	tolB translocation protein TolB; Provisional	99.07
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.07
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.06
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.05
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.04
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.04
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.03
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.03
PRK04043	419	tolB translocation protein TolB; Provisional	99.0
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.0
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.99
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.97
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.97
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.96
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.93
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.91
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.91
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.9
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.89
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.89
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.89
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.87
KOG2314	698	consensus Translation initiation factor 3, subunit	98.85
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.85
COG4946	668	Uncharacterized protein related to the periplasmic	98.85
KOG2695	425	consensus WD40 repeat protein [General function pr	98.84
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.83
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.81
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.81
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.8
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.79
KOG2314	698	consensus Translation initiation factor 3, subunit	98.78
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.77
KOG2315	566	consensus Predicted translation initiation factor	98.77
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.76
PRK04043	419	tolB translocation protein TolB; Provisional	98.74
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.72
COG4946	668	Uncharacterized protein related to the periplasmic	98.71
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.71
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.71
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.7
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.67
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.66
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.65
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.63
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.6
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.57
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.56
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.51
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.51
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.46
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.41
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.34
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.34
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.3
KOG3621	726	consensus WD40 repeat-containing protein [General	98.28
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.27
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.24
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.13
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.09
KOG2444	238	consensus WD40 repeat protein [General function pr	98.07
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.05
PHA02713	557	hypothetical protein; Provisional	98.02
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.99
PRK02888	635	nitrous-oxide reductase; Validated	97.99
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.99
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.97
KOG2395	644	consensus Protein involved in vacuole import and d	97.97
PRK02888	635	nitrous-oxide reductase; Validated	97.96
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.9
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.86
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.83
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.82
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.81
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.77
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.76
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.74
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.73
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.73
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.71
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.65
COG3391	381	Uncharacterized conserved protein [Function unknow	97.65
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.65
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.58
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.53
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.5
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.49
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.47
PHA02713	557	hypothetical protein; Provisional	97.45
COG3391	381	Uncharacterized conserved protein [Function unknow	97.42
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.42
KOG3621	726	consensus WD40 repeat-containing protein [General	97.4
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.4
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.22
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.21
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.21
KOG2444	238	consensus WD40 repeat protein [General function pr	97.15
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.15
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.09
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.99
PHA03098	534	kelch-like protein; Provisional	96.98
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.98
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.98
PHA03098	534	kelch-like protein; Provisional	96.96
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.91
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.9
PHA02790	480	Kelch-like protein; Provisional	96.85
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.85
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.77
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.73
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.73
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.67
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.65
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.61
PHA02790	480	Kelch-like protein; Provisional	96.48
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.28
PRK13616	591	lipoprotein LpqB; Provisional	96.04
PRK13616	591	lipoprotein LpqB; Provisional	95.93
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.89
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	95.79
KOG2395	644	consensus Protein involved in vacuole import and d	95.69
COG5167	776	VID27 Protein involved in vacuole import and degra	95.52
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	95.52
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.51
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	95.41
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.34
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.3
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.06
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.01
PRK10115	686	protease 2; Provisional	94.89
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.82
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	94.66
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	94.65
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.58
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.53
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	93.95
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.91
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	93.71
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	93.58
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.48
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	93.33
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	92.85
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	92.61
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	92.58
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	92.36
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	92.31
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	92.14
PF14727	418	PHTB1_N: PTHB1 N-terminus	91.93
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	91.84
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.71
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	91.59
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	91.27
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	91.16
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	91.14
PRK13684	334	Ycf48-like protein; Provisional	90.79
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	90.28
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	90.1
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	90.06
PLN00033	398	photosystem II stability/assembly factor; Provisio	89.91
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	89.55
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	89.04
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	88.72
COG1520	370	FOG: WD40-like repeat [Function unknown]	88.6
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	88.52
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	88.2
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	88.17
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	88.05
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	87.38
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	87.29
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	86.49
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	86.38
COG4590	733	ABC-type uncharacterized transport system, permeas	86.32
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	85.8
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	85.55
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	85.3
PF12768	281	Rax2: Cortical protein marker for cell polarity	85.27
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	84.98
KOG2377	657	consensus Uncharacterized conserved protein [Funct	84.5
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	84.48
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	83.32
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	82.7
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	81.72
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	81.58
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	81.2
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	81.17

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.4e-58  Score=335.15  Aligned_cols=269  Identities=57%  Similarity=0.997  Sum_probs=262.5

Q ss_pred             CccccccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcE
Q 023772            5 DLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQI   84 (277)
Q Consensus         5 ~~~~~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v   84 (277)
                      ++|..++.+|.+|+++|+.++|+-+|+|+++||.|++||+|++..|.+++++.+|...|..++.+.++..|++|+.|+.+
T Consensus         4 e~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v   83 (307)
T KOG0316|consen    4 ELPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAV   83 (307)
T ss_pred             cCcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceE
Confidence            67888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeec
Q 023772           85 FYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSV  164 (277)
Q Consensus        85 ~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  164 (277)
                      .+||+++|+.++.|++|..+|+.+.|++....+++|+.|.++++||+++...+|++++....+.+.++.....++++|+.
T Consensus        84 ~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~  163 (307)
T KOG0316|consen   84 QVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSV  163 (307)
T ss_pred             EEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEE
Q 023772          165 DGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVT  244 (277)
Q Consensus       165 d~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  244 (277)
                      ||++|.||+|.++......++||+|++|+++++..++++.|+++++.|-.+|++++.|.||.+..+.++||+...+..++
T Consensus       164 DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~  243 (307)
T KOG0316|consen  164 DGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVF  243 (307)
T ss_pred             CCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCeEEEEECcCccceeeeccCccee
Q 023772          245 GGSEDGYIYFWDLVDASVVAKFKAHSLVV  273 (277)
Q Consensus       245 sgs~d~~i~iwd~~~~~~~~~~~~h~~~v  273 (277)
                      +||+||.|++||+.++.++.++..|+.+|
T Consensus       244 sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~  272 (307)
T KOG0316|consen  244 SGSEDGKVYFWDLVDETQISKLSVVSTVI  272 (307)
T ss_pred             eccCCceEEEEEeccceeeeeeccCCcee
Confidence            99999999999999999999999998774

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.6e-49  Score=307.93  Aligned_cols=260  Identities=26%  Similarity=0.423  Sum_probs=228.4

Q ss_pred             ceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 023772           12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVST   91 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~   91 (277)
                      ..+.||.++|.|++|+|+|..|+|||-|.++|+||+.+..+..+.++|..-|.+++|+||++.|++|+.||+|++||.++
T Consensus       109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpkt  188 (480)
T KOG0271|consen  109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKT  188 (480)
T ss_pred             cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCC
Confidence            44679999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             Cce-eEEeecccCceeEEEEec-----CCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCe-EEEeec
Q 023772           92 GRV-IRKFRGHESEVNAVKFNE-----YSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE-IIGGSV  164 (277)
Q Consensus        92 ~~~-~~~~~~h~~~v~~i~~~~-----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~  164 (277)
                      |++ .+.+.+|+..|++++|.|     ..+++++++.||+++|||+....  .+..+..|..+++++.+.+.. +++|+.
T Consensus       189 g~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~--~~~~lsgHT~~VTCvrwGG~gliySgS~  266 (480)
T KOG0271|consen  189 GQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT--CVRTLSGHTASVTCVRWGGEGLIYSGSQ  266 (480)
T ss_pred             CCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce--EEEEeccCccceEEEEEcCCceEEecCC
Confidence            865 578999999999999975     46799999999999999987543  456678899999999998655 789999


Q ss_pred             CCcEEEEEccCCcccc----------------------------------------------------------------
Q 023772          165 DGTVRTFDIRVGRELS----------------------------------------------------------------  180 (277)
Q Consensus       165 d~~i~i~d~~~~~~~~----------------------------------------------------------------  180 (277)
                      |++|++|+...+....                                                                
T Consensus       267 DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~  346 (480)
T KOG0271|consen  267 DRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDF  346 (480)
T ss_pred             CceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCc
Confidence            9999999864321000                                                                


Q ss_pred             -----------------cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceE
Q 023772          181 -----------------DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHV  243 (277)
Q Consensus       181 -----------------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  243 (277)
                                       ..++..|+.+.||||+++++++|.|..|++||.++|+.+..|+||...++.  ++++.|.++|
T Consensus       347 tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYq--vawsaDsRLl  424 (480)
T KOG0271|consen  347 TLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQ--VAWSADSRLL  424 (480)
T ss_pred             eEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEE--EEeccCccEE
Confidence                             011224789999999999999999999999999999999999999876654  5678999999


Q ss_pred             EeecCCCeEEEEECcCccceeeeccCcceeEe
Q 023772          244 TGGSEDGYIYFWDLVDASVVAKFKAHSLVVKL  275 (277)
Q Consensus       244 ~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~  275 (277)
                      ++||.|.++++||+++.++...|.+|...|-.
T Consensus       425 VS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~  456 (480)
T KOG0271|consen  425 VSGSKDSTLKVWDVRTKKLKQDLPGHADEVFA  456 (480)
T ss_pred             EEcCCCceEEEEEeeeeeecccCCCCCceEEE
Confidence            99999999999999999999999999876643

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.9e-46  Score=293.93  Aligned_cols=256  Identities=17%  Similarity=0.287  Sum_probs=230.7

Q ss_pred             eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCC--CCEEEEEeCCCcEEEEECCCC
Q 023772           15 KGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTAD--NSKLISCGGDRQIFYWDVSTG   92 (277)
Q Consensus        15 ~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~t~s~d~~v~~wd~~~~   92 (277)
                      .|-.+||..+.|+.+++.|+|||.+|.+++|+..+...+.+|.+|...+.++.|+|.  +..++||+.||++++|++++.
T Consensus       172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e  251 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE  251 (459)
T ss_pred             ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence            366889999999999999999999999999999999999999999999999999997  568999999999999999999


Q ss_pred             ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC--eEEEeecCCcEEE
Q 023772           93 RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--EIIGGSVDGTVRT  170 (277)
Q Consensus        93 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~i  170 (277)
                      .++..+.+|..+|..++|+|+|++|+|++.|.+-++||+++...  .....+|...+..+.+.++  .+++|+.|..-++
T Consensus       252 ~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E--lL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~Rv  329 (459)
T KOG0272|consen  252 TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE--LLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRV  329 (459)
T ss_pred             cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh--hHhhcccccccceeEecCCCceeeccCccchhhe
Confidence            99999999999999999999999999999999999999987543  3334677777877777654  4889999999999


Q ss_pred             EEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecC-CCceEEeec
Q 023772          171 FDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN-SDAHVTGGS  247 (277)
Q Consensus       171 ~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~sgs  247 (277)
                      ||+|+++++..  .+..+|.+++|+|+|-.|++|+.|+++++||++..+.+..+.+|.+  .+..++++| .|.+|+|+|
T Consensus       330 WDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~~g~fL~Tas  407 (459)
T KOG0272|consen  330 WDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQEGYFLVTAS  407 (459)
T ss_pred             eecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc--hhhheEecccCCeEEEEcc
Confidence            99999998754  4566899999999999999999999999999999999999999964  446677887 788999999


Q ss_pred             CCCeEEEEECcCccceeeeccCcceeE
Q 023772          248 EDGYIYFWDLVDASVVAKFKAHSLVVK  274 (277)
Q Consensus       248 ~d~~i~iwd~~~~~~~~~~~~h~~~v~  274 (277)
                      .|++++||...+..+++.+.||..-|.
T Consensus       408 yD~t~kiWs~~~~~~~ksLaGHe~kV~  434 (459)
T KOG0272|consen  408 YDNTVKIWSTRTWSPLKSLAGHEGKVI  434 (459)
T ss_pred             cCcceeeecCCCcccchhhcCCccceE
Confidence            999999999999999999999987654

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=8.4e-45  Score=285.70  Aligned_cols=244  Identities=23%  Similarity=0.341  Sum_probs=223.6

Q ss_pred             cccceeeccCCcEEEEEEeCC--CCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEE
Q 023772            9 TEANVLKGHEGAVLAARFNGD--GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFY   86 (277)
Q Consensus         9 ~~~~~l~~H~~~V~~~~~~~~--~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~   86 (277)
                      +...+|+||.+.|.++.|+|.  +..++||+.||++++|+..+..++..+.+|...|..++|+|+|++|+|++.|.+-++
T Consensus       208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRl  287 (459)
T KOG0272|consen  208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRL  287 (459)
T ss_pred             ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhh
Confidence            456789999999999999996  668999999999999999998999999999999999999999999999999999999


Q ss_pred             EECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCe--EEEeec
Q 023772           87 WDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE--IIGGSV  164 (277)
Q Consensus        87 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~  164 (277)
                      ||++++..+....+|..+|.+++|++||.+++|||.|..-++||++++.  .+..+.+|-..|..+.++|+.  +++|+.
T Consensus       288 WD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr--~im~L~gH~k~I~~V~fsPNGy~lATgs~  365 (459)
T KOG0272|consen  288 WDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR--CIMFLAGHIKEILSVAFSPNGYHLATGSS  365 (459)
T ss_pred             cccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCc--EEEEecccccceeeEeECCCceEEeecCC
Confidence            9999999888889999999999999999999999999999999999865  467788899999999998875  999999


Q ss_pred             CCcEEEEEccCCccccc--CCCCCeeEEEEeC-CCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCc
Q 023772          165 DGTVRTFDIRVGRELSD--DLGQPVNCISMSN-DGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDA  241 (277)
Q Consensus       165 d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (277)
                      |++++|||++..+++..  .+..-|+.+.|+| .|.+|++++.|+++++|...+..+++.+.||..+++  .+.+++++.
T Consensus       366 Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~--s~Dis~d~~  443 (459)
T KOG0272|consen  366 DNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVI--SLDISPDSQ  443 (459)
T ss_pred             CCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceE--EEEeccCCc
Confidence            99999999998776544  3445789999999 788999999999999999999999999999987654  456799999


Q ss_pred             eEEeecCCCeEEEEE
Q 023772          242 HVTGGSEDGYIYFWD  256 (277)
Q Consensus       242 ~l~sgs~d~~i~iwd  256 (277)
                      ++++++.|+++++|.
T Consensus       444 ~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  444 AIATSSFDRTIKLWR  458 (459)
T ss_pred             eEEEeccCceeeecc
Confidence            999999999999995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.2e-42  Score=260.72  Aligned_cols=263  Identities=20%  Similarity=0.319  Sum_probs=237.6

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~   90 (277)
                      ..+|+||.+.|.++.|++|+++|+|+|.||.+.|||..|......+.....-|..++|+|.+++++.|+-|+.+.||++.
T Consensus        48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls  127 (343)
T KOG0286|consen   48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS  127 (343)
T ss_pred             EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence            46799999999999999999999999999999999999988888888888899999999999999999999999999998


Q ss_pred             CC------ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC---CeEEE
Q 023772           91 TG------RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK---TEIIG  161 (277)
Q Consensus        91 ~~------~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  161 (277)
                      +.      ...+.+.+|++.+.++.|.+ ...|+|+|.|.++-+||++++.  .++.+.+|..-|.++.+.|   +.+++
T Consensus       128 ~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~--~~~~f~GH~gDV~slsl~p~~~ntFvS  204 (343)
T KOG0286|consen  128 TRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQ--QTQVFHGHTGDVMSLSLSPSDGNTFVS  204 (343)
T ss_pred             cccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccce--EEEEecCCcccEEEEecCCCCCCeEEe
Confidence            54      35677999999999999988 5688899999999999998753  5677889999998888766   55999


Q ss_pred             eecCCcEEEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCC
Q 023772          162 GSVDGTVRTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNS  239 (277)
Q Consensus       162 g~~d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (277)
                      |+.|+..++||+|.+.....  .+...|+++.|.|+|.-+++|++|+++|+||++..+.+..|.......-+..+.||..
T Consensus       205 g~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~S  284 (343)
T KOG0286|consen  205 GGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKS  284 (343)
T ss_pred             cccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEccc
Confidence            99999999999999865543  4567899999999999999999999999999999999999987665566778899999


Q ss_pred             CceEEeecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772          240 DAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL  276 (277)
Q Consensus       240 ~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  276 (277)
                      |++|.+|..|.++.+||.-.++.+..|.+|...|++|
T Consensus       285 GRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl  321 (343)
T KOG0286|consen  285 GRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCL  321 (343)
T ss_pred             ccEEEeeecCCceeEeeccccceEEEeeccCCeeEEE
Confidence            9999999999999999999999999999999999876

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.3e-43  Score=272.78  Aligned_cols=246  Identities=26%  Similarity=0.450  Sum_probs=212.8

Q ss_pred             ccccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeE-EEEeccCccEEEEEEcC-----CCCEEEEEeCC
Q 023772            8 RTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHI-KTYKSHGREVRDVHVTA-----DNSKLISCGGD   81 (277)
Q Consensus         8 ~~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~-~~~~~h~~~v~~~~~~~-----~~~~l~t~s~d   81 (277)
                      +++..+.+||..-|.|++|+|||+.|+||+.||+|++||+.+|+++ +.+.+|...|++++|.|     ...+|+++|.|
T Consensus       147 eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skD  226 (480)
T KOG0271|consen  147 ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKD  226 (480)
T ss_pred             CCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCC
Confidence            4556778999999999999999999999999999999999998765 67999999999999975     55789999999


Q ss_pred             CcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCC--------------------------
Q 023772           82 RQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHS--------------------------  135 (277)
Q Consensus        82 ~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~--------------------------  135 (277)
                      |.|+|||+..+.++..+.+|+.+|+++.|--++ ++++||.|++|++|+...+.                          
T Consensus       227 g~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtg  305 (480)
T KOG0271|consen  227 GSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTG  305 (480)
T ss_pred             CCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcc
Confidence            999999999999999999999999999998654 89999999999999854210                          


Q ss_pred             ---------------------------------------------------CcceEeeccccCcEEEEEecCC--eEEEe
Q 023772          136 ---------------------------------------------------TEPIQIIDSFQDSVMSVCLTKT--EIIGG  162 (277)
Q Consensus       136 ---------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~--~~~~g  162 (277)
                                                                         .+++..+.+|+..+..+.++|+  .++++
T Consensus       306 af~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASa  385 (480)
T KOG0271|consen  306 AFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASA  385 (480)
T ss_pred             ccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEe
Confidence                                                               0111122346666777777765  48999


Q ss_pred             ecCCcEEEEEccCCcccccC--CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCC
Q 023772          163 SVDGTVRTFDIRVGRELSDD--LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSD  240 (277)
Q Consensus       163 ~~d~~i~i~d~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (277)
                      +.|+.|++||.++++.+...  +-++|..++|+.|.+.|++||.|.++++||+++.++.+.+.||...++..+  ++|||
T Consensus       386 SFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vD--wspDG  463 (480)
T KOG0271|consen  386 SFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVD--WSPDG  463 (480)
T ss_pred             ecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEE--ecCCC
Confidence            99999999999999876553  456899999999999999999999999999999999999999988776665  68999


Q ss_pred             ceEEeecCCCeEEEEE
Q 023772          241 AHVTGGSEDGYIYFWD  256 (277)
Q Consensus       241 ~~l~sgs~d~~i~iwd  256 (277)
                      ..+++|+.|..+++|.
T Consensus       464 ~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  464 QRVASGGKDKVLRLWR  479 (480)
T ss_pred             ceeecCCCceEEEeec
Confidence            9999999999999994

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-41  Score=254.10  Aligned_cols=253  Identities=25%  Similarity=0.394  Sum_probs=215.9

Q ss_pred             cceeeccCCcEEEEEEeCC-CCEEEEEeCCCcEEEEcCC-----CCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcE
Q 023772           11 ANVLKGHEGAVLAARFNGD-GNYCLSCGKDRTIRLWNPH-----RGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQI   84 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~-~~~l~s~s~d~~v~iwd~~-----~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v   84 (277)
                      ..+|.+|.+.|..++..+. .+.+++++.|.++.+|++.     .|..++.+.+|++.|..+..++++++.+++|.|+++
T Consensus         8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~l   87 (315)
T KOG0279|consen    8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTL   87 (315)
T ss_pred             eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceE
Confidence            3468899999999999886 5788899999999999754     577899999999999999999999999999999999


Q ss_pred             EEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCe----EE
Q 023772           85 FYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE----II  160 (277)
Q Consensus        85 ~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  160 (277)
                      ++||+++++..+.|.+|...|.+++|+++.+.++||+.|.+|++|+...... ....-..+.+-|..+.+.|+.    ++
T Consensus        88 rlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck-~t~~~~~~~~WVscvrfsP~~~~p~Iv  166 (315)
T KOG0279|consen   88 RLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK-YTIHEDSHREWVSCVRFSPNESNPIIV  166 (315)
T ss_pred             EEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEE-EEEecCCCcCcEEEEEEcCCCCCcEEE
Confidence            9999999999999999999999999999999999999999999999865321 111112225667888888773    88


Q ss_pred             EeecCCcEEEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecC
Q 023772          161 GGSVDGTVRTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN  238 (277)
Q Consensus       161 ~g~~d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (277)
                      +++.|+++++||+++.+....  .+...++.+++||||..+++|+.||.+.+||+..++.++.+.+.   ..+..++|+|
T Consensus       167 s~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~---~~v~sl~fsp  243 (315)
T KOG0279|consen  167 SASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAF---DIVNSLCFSP  243 (315)
T ss_pred             EccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCC---CeEeeEEecC
Confidence            999999999999998765433  34568999999999999999999999999999999998777543   4567789999


Q ss_pred             CCceEEeecCCCeEEEEECcCccceeeecc
Q 023772          239 SDAHVTGGSEDGYIYFWDLVDASVVAKFKA  268 (277)
Q Consensus       239 ~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~  268 (277)
                      +..+|+.+. +..|+|||++++.++..++-
T Consensus       244 nrywL~~at-~~sIkIwdl~~~~~v~~l~~  272 (315)
T KOG0279|consen  244 NRYWLCAAT-ATSIKIWDLESKAVVEELKL  272 (315)
T ss_pred             CceeEeecc-CCceEEEeccchhhhhhccc
Confidence            887777665 44599999999999888774

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-41  Score=267.83  Aligned_cols=270  Identities=23%  Similarity=0.391  Sum_probs=231.8

Q ss_pred             CccccccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC---eeEEEEeccCccEEEEEEcCCCCEEEEEeCC
Q 023772            5 DLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG---IHIKTYKSHGREVRDVHVTADNSKLISCGGD   81 (277)
Q Consensus         5 ~~~~~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d   81 (277)
                      .+|.++.+++..|.+.|..+.||++|+||||++.|.+..||.+...   +..+++.+|..+|..+.|+||.+++++++.|
T Consensus       211 qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~  290 (519)
T KOG0293|consen  211 QIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFD  290 (519)
T ss_pred             cCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCch
Confidence            4688889999999999999999999999999999999999986443   4578999999999999999999999999999


Q ss_pred             CcEEEEECCCCceeEEeec-ccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEE--ecCCe
Q 023772           82 RQIFYWDVSTGRVIRKFRG-HESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVC--LTKTE  158 (277)
Q Consensus        82 ~~v~~wd~~~~~~~~~~~~-h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  158 (277)
                      ..+++||+.+|.+...+.. |...+.+++|.||+..+++|+.|+++..||+.........-..  ...+..++  .+++.
T Consensus       291 e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr--~~~v~dlait~Dgk~  368 (519)
T KOG0293|consen  291 EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVR--DPKVHDLAITYDGKY  368 (519)
T ss_pred             HheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccc--cceeEEEEEcCCCcE
Confidence            9999999999998877753 4678999999999999999999999999998754322221111  12344444  45677


Q ss_pred             EEEeecCCcEEEEEccCCccc-ccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEec
Q 023772          159 IIGGSVDGTVRTFDIRVGREL-SDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLT  237 (277)
Q Consensus       159 ~~~g~~d~~i~i~d~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  237 (277)
                      +++...|..|++|+.+..... .....+++++.++|.+++++++.-.+..+++||++..++++.|.||....+....||.
T Consensus       369 vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFg  448 (519)
T KOG0293|consen  369 VLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFG  448 (519)
T ss_pred             EEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccC
Confidence            888889999999998765544 2345689999999999999999999999999999999999999999877788887886


Q ss_pred             C-CCceEEeecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772          238 N-SDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL  276 (277)
Q Consensus       238 ~-~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  276 (277)
                      - ++.++|+||+|+.||||+..+|+++.++.||+..|.++
T Consensus       449 g~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcV  488 (519)
T KOG0293|consen  449 GGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCV  488 (519)
T ss_pred             CCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEE
Confidence            5 55899999999999999999999999999999998875

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=6.9e-41  Score=253.40  Aligned_cols=263  Identities=28%  Similarity=0.541  Sum_probs=223.2

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCC-CCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPH-RGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDV   89 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~   89 (277)
                      ...+.||++.|..+.|+|+|..++|||.|..|.+|+.. ..+....+++|+++|..+.|.+++..|+++|.|++++.||+
T Consensus        40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~  119 (338)
T KOG0265|consen   40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA  119 (338)
T ss_pred             hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence            45678999999999999999999999999999999953 34556788899999999999999999999999999999999


Q ss_pred             CCCceeEEeecccCceeEEEEecC-CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec--CCeEEEeecCC
Q 023772           90 STGRVIRKFRGHESEVNAVKFNEY-SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT--KTEIIGGSVDG  166 (277)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~d~  166 (277)
                      ++|++++.++.|..-|+++....- ..++.|++.|+++++||+|...  .++++.. +-.+.++.+.  ..++.+|+-|+
T Consensus       120 ~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~--~~~t~~~-kyqltAv~f~d~s~qv~sggIdn  196 (338)
T KOG0265|consen  120 ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE--AIKTFEN-KYQLTAVGFKDTSDQVISGGIDN  196 (338)
T ss_pred             ccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc--hhhcccc-ceeEEEEEecccccceeeccccC
Confidence            999999999999999999985544 3578889999999999998643  3333321 2235566665  56799999999


Q ss_pred             cEEEEEccCCcccc--cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCC----CceEEEEecccc--ceeeeeeEecC
Q 023772          167 TVRTFDIRVGRELS--DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRST----GELLQEYKGHIC--KSFKTDCCLTN  238 (277)
Q Consensus       167 ~i~i~d~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~----~~~~~~~~~~~~--~~~~~~~~~~~  238 (277)
                      .|++||++.+....  ..+..+|+.+..+|+|.++++-+.|.++++||++.    ..+++.|.+|..  ....+.|+++|
T Consensus       197 ~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp  276 (338)
T KOG0265|consen  197 DIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP  276 (338)
T ss_pred             ceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC
Confidence            99999998876543  35667999999999999999999999999999864    355788887632  23346688999


Q ss_pred             CCceEEeecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772          239 SDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL  276 (277)
Q Consensus       239 ~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  276 (277)
                      ++.++..||.|+.+++||.....++.++.||-+.|..+
T Consensus       277 ~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~  314 (338)
T KOG0265|consen  277 NGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEV  314 (338)
T ss_pred             CCCccccccccceEEEeecccccEEEEcCCcceeEEEe
Confidence            99999999999999999999999999999999888764

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3.4e-40  Score=247.34  Aligned_cols=244  Identities=21%  Similarity=0.371  Sum_probs=206.9

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~   90 (277)
                      ...+.||+..|..+..++||++.+|+|.|+++|+||+.+++..+.|.+|...|.+++|++++..|+|||.|+++++|++.
T Consensus        56 ~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~  135 (315)
T KOG0279|consen   56 VRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL  135 (315)
T ss_pred             eeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec
Confidence            45578999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCceeEEeecc--cCceeEEEEecC--CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC--eEEEeec
Q 023772           91 TGRVIRKFRGH--ESEVNAVKFNEY--SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--EIIGGSV  164 (277)
Q Consensus        91 ~~~~~~~~~~h--~~~v~~i~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~  164 (277)
                      .+. ..+...+  ++.|+++.|+|.  ...|+++|.|+++++||+++.+.  ...+.+|...+..+.++|+  .+++|+.
T Consensus       136 g~c-k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l--~~~~~gh~~~v~t~~vSpDGslcasGgk  212 (315)
T KOG0279|consen  136 GVC-KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL--RTTFIGHSGYVNTVTVSPDGSLCASGGK  212 (315)
T ss_pred             ccE-EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch--hhccccccccEEEEEECCCCCEEecCCC
Confidence            544 4444433  789999999998  67999999999999999987543  3445567777777776655  5899999


Q ss_pred             CCcEEEEEccCCccccc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccc-------cceeeeeeEe
Q 023772          165 DGTVRTFDIRVGRELSD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHI-------CKSFKTDCCL  236 (277)
Q Consensus       165 d~~i~i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-------~~~~~~~~~~  236 (277)
                      ||.+.+||++.++.+.. .....|++++|+|+.-+|.+ ..+..|+|||+.++.++.++....       .....+.+++
T Consensus       213 dg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~-at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaw  291 (315)
T KOG0279|consen  213 DGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCA-ATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAW  291 (315)
T ss_pred             CceEEEEEccCCceeEeccCCCeEeeEEecCCceeEee-ccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEE
Confidence            99999999999887654 45679999999998766555 456679999999998887765431       2345677889


Q ss_pred             cCCCceEEeecCCCeEEEEECc
Q 023772          237 TNSDAHVTGGSEDGYIYFWDLV  258 (277)
Q Consensus       237 ~~~~~~l~sgs~d~~i~iwd~~  258 (277)
                      +++|..|..|..|+.|++|.+.
T Consensus       292 s~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  292 SADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             cCCCcEEEeeecCCcEEEEEee
Confidence            9999999999999999999875

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=8.1e-40  Score=279.11  Aligned_cols=260  Identities=28%  Similarity=0.531  Sum_probs=226.2

Q ss_pred             eeec-cCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCe--eEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 023772           13 VLKG-HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI--HIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDV   89 (277)
Q Consensus        13 ~l~~-H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~   89 (277)
                      .+.+ |...|.++.|+++|+++++++.|+.+++|+..+++  ..+.+.+|...|++++|+|+++++++++.|+++++||+
T Consensus       153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~  232 (456)
T KOG0266|consen  153 TLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDL  232 (456)
T ss_pred             eecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeec
Confidence            3434 47899999999999999999999999999997777  77778899999999999999999999999999999999


Q ss_pred             -CCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEeecCC
Q 023772           90 -STGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDG  166 (277)
Q Consensus        90 -~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~d~  166 (277)
                       ..+..++++.+|...|++++|+|+++++++|+.|++|++||++..  +....+..|...+..+.+++  ..+++++.|+
T Consensus       233 ~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~--~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~  310 (456)
T KOG0266|consen  233 KDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG--ECVRKLKGHSDGISGLAFSPDGNLLVSASYDG  310 (456)
T ss_pred             cCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC--eEEEeeeccCCceEEEEECCCCCEEEEcCCCc
Confidence             556889999999999999999999999999999999999999874  45667788888888888765  4589999999


Q ss_pred             cEEEEEccCCcc--c---ccCCCC-CeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccce-eeeeeEecCC
Q 023772          167 TVRTFDIRVGRE--L---SDDLGQ-PVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKS-FKTDCCLTNS  239 (277)
Q Consensus       167 ~i~i~d~~~~~~--~---~~~~~~-~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~  239 (277)
                      .|++||+.++..  .   ...... +++++.|+|++.++++++.|+.+++||+..++....+.+|.... -......++.
T Consensus       311 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (456)
T KOG0266|consen  311 TIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTG  390 (456)
T ss_pred             cEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCC
Confidence            999999998872  1   222222 68999999999999999999999999999999999999987641 2223345778


Q ss_pred             CceEEeecCCCeEEEEECcCccceeeeccC-cceeE
Q 023772          240 DAHVTGGSEDGYIYFWDLVDASVVAKFKAH-SLVVK  274 (277)
Q Consensus       240 ~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h-~~~v~  274 (277)
                      +.++.+|+.|+.|++||+.++..+..+.+| ..++.
T Consensus       391 ~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~  426 (456)
T KOG0266|consen  391 GKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVS  426 (456)
T ss_pred             CCeEEEEeCCceEEEEeCCccchhhhhcCCCCCcee
Confidence            999999999999999999999999999999 55443

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.4e-40  Score=257.49  Aligned_cols=266  Identities=24%  Similarity=0.411  Sum_probs=236.3

Q ss_pred             cc-cccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEE
Q 023772            7 PR-TEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIF   85 (277)
Q Consensus         7 ~~-~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~   85 (277)
                      |+ .+.+.+.+|..+|+.+-|.|+-...++++.|++|++||..+|++.+.+++|...+.++.|+..|++++++|.|-.++
T Consensus        96 pRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~  175 (406)
T KOG0295|consen   96 PRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAK  175 (406)
T ss_pred             CCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchh
Confidence            44 45677889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCC-CceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC--eEEEe
Q 023772           86 YWDVST-GRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--EIIGG  162 (277)
Q Consensus        86 ~wd~~~-~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g  162 (277)
                      +||.++ -++++...+|...|.++.|-|.+.++++++.|.+|+.|++.++  ..+..+..+..-+..+.+..+  .++++
T Consensus       176 LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg--~cv~t~~~h~ewvr~v~v~~DGti~As~  253 (406)
T KOG0295|consen  176 LWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG--YCVKTFPGHSEWVRMVRVNQDGTIIASC  253 (406)
T ss_pred             heeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccc--eeEEeccCchHhEEEEEecCCeeEEEec
Confidence            999987 5788889999999999999999999999999999999999865  456667777776666666554  48889


Q ss_pred             ecCCcEEEEEccCCc--ccccCCCCCeeEEEEeCC---------------CCEEEEEecCCeEEEEECCCCceEEEEecc
Q 023772          163 SVDGTVRTFDIRVGR--ELSDDLGQPVNCISMSND---------------GNCILASCLDSTLRLLDRSTGELLQEYKGH  225 (277)
Q Consensus       163 ~~d~~i~i~d~~~~~--~~~~~~~~~v~~~~~s~~---------------~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~  225 (277)
                      +.|.++++|-+.+++  .....++++|.|++|-|+               +.++.+++.|++||+||+.++.++.++.+|
T Consensus       254 s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~gh  333 (406)
T KOG0295|consen  254 SNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGH  333 (406)
T ss_pred             CCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecc
Confidence            999999999998873  445567889999998762               358999999999999999999999999999


Q ss_pred             ccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772          226 ICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL  276 (277)
Q Consensus       226 ~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  276 (277)
                      .+  .+...+|+|.|+||++..+|+++++||+.++++.+.+.+|...|..+
T Consensus       334 dn--wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~l  382 (406)
T KOG0295|consen  334 DN--WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSL  382 (406)
T ss_pred             cc--eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEE
Confidence            64  45677899999999999999999999999999999999998877654

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.7e-40  Score=256.89  Aligned_cols=252  Identities=28%  Similarity=0.495  Sum_probs=222.8

Q ss_pred             cccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023772            9 TEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWD   88 (277)
Q Consensus         9 ~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd   88 (277)
                      ....+++||.+-|.|+++.|-..+++||+.|++++|||+.+|++..++.+|-..|..+++++...|+++++.|+.||.||
T Consensus       142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD  221 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD  221 (460)
T ss_pred             eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence            33567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEeecCC
Q 023772           89 VSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDG  166 (277)
Q Consensus        89 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~d~  166 (277)
                      ++..+.++.+.+|-+.|.+++.+|....|+||+.|.++++||+++.  ..+..+.+|...+..+...+  .++++|+.|+
T Consensus       222 Le~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr--~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~  299 (460)
T KOG0285|consen  222 LEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR--ASVHVLSGHTNPVASVMCQPTDPQVITGSHDS  299 (460)
T ss_pred             chhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeeccc--ceEEEecCCCCcceeEEeecCCCceEEecCCc
Confidence            9999999999999999999999999999999999999999999974  45667788999998888774  4699999999


Q ss_pred             cEEEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEE
Q 023772          167 TVRTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVT  244 (277)
Q Consensus       167 ~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  244 (277)
                      +|++||++.++....  .+...+.+++.+|....+++++.| .|+-|++..|..++.+.+|...  +..... ..+.+++
T Consensus       300 tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~i--intl~~-nsD~v~~  375 (460)
T KOG0285|consen  300 TVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAI--INTLSV-NSDGVLV  375 (460)
T ss_pred             eEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccce--eeeeee-ccCceEE
Confidence            999999999886654  455689999999999888888887 4999999999999888888543  333333 3456788


Q ss_pred             eecCCCeEEEEECcCccceeee
Q 023772          245 GGSEDGYIYFWDLVDASVVAKF  266 (277)
Q Consensus       245 sgs~d~~i~iwd~~~~~~~~~~  266 (277)
                      +|+..|.+.+||.++|-..+.+
T Consensus       376 ~G~dng~~~fwdwksg~nyQ~~  397 (460)
T KOG0285|consen  376 SGGDNGSIMFWDWKSGHNYQRG  397 (460)
T ss_pred             EcCCceEEEEEecCcCcccccc
Confidence            8999999999999998665555

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=5.6e-39  Score=237.40  Aligned_cols=237  Identities=22%  Similarity=0.370  Sum_probs=202.8

Q ss_pred             CEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eeEEeecccCceeEE
Q 023772           31 NYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGR--VIRKFRGHESEVNAV  108 (277)
Q Consensus        31 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~--~~~~~~~h~~~v~~i  108 (277)
                      -+|+|+|.|.+||+|...+|.+.++++.....|+.+.+.|+.+.|++++. ..|++||+.++.  ++.+|.+|+..|.++
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV   89 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV   89 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence            58899999999999999999999999988899999999999999988765 479999999865  689999999999999


Q ss_pred             EEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC--eEEEeecCCcEEEEEccCCcccc---cCC
Q 023772          109 KFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--EIIGGSVDGTVRTFDIRVGRELS---DDL  183 (277)
Q Consensus       109 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~i~d~~~~~~~~---~~~  183 (277)
                      .|..+++.++|||.||+++|||++.....+   ...+..++..+.+.++  +|++|..+|.|++||++......   ...
T Consensus        90 gF~~dgrWMyTgseDgt~kIWdlR~~~~qR---~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~  166 (311)
T KOG0315|consen   90 GFQCDGRWMYTGSEDGTVKIWDLRSLSCQR---NYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPED  166 (311)
T ss_pred             EEeecCeEEEecCCCceEEEEeccCcccch---hccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCC
Confidence            999999999999999999999999754332   3345577888877765  49999999999999998764322   223


Q ss_pred             CCCeeEEEEeCCCCEEEEEecCCeEEEEECCCC------ceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEEC
Q 023772          184 GQPVNCISMSNDGNCILASCLDSTLRLLDRSTG------ELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDL  257 (277)
Q Consensus       184 ~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~  257 (277)
                      ..+++++.+.|+|++++++-..|.+++|++-..      +++..|..|  ...++.|.+||++++||++|.|.+++||+.
T Consensus       167 ~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah--~~~il~C~lSPd~k~lat~ssdktv~iwn~  244 (311)
T KOG0315|consen  167 DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAH--NGHILRCLLSPDVKYLATCSSDKTVKIWNT  244 (311)
T ss_pred             CcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecc--cceEEEEEECCCCcEEEeecCCceEEEEec
Confidence            468999999999999999999999999998543      345566666  457889999999999999999999999999


Q ss_pred             cCc-cceeeeccCccee
Q 023772          258 VDA-SVVAKFKAHSLVV  273 (277)
Q Consensus       258 ~~~-~~~~~~~~h~~~v  273 (277)
                      ++. +...++++|...+
T Consensus       245 ~~~~kle~~l~gh~rWv  261 (311)
T KOG0315|consen  245 DDFFKLELVLTGHQRWV  261 (311)
T ss_pred             CCceeeEEEeecCCceE
Confidence            998 7788899996543

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=4.6e-41  Score=268.73  Aligned_cols=268  Identities=24%  Similarity=0.460  Sum_probs=233.8

Q ss_pred             CccccccceeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEcCCC-CeeEEEEeccCccEEEEEEcCCCCEEEEEeCCC
Q 023772            5 DLPRTEANVLKGHEGAVLAARFNG-DGNYCLSCGKDRTIRLWNPHR-GIHIKTYKSHGREVRDVHVTADNSKLISCGGDR   82 (277)
Q Consensus         5 ~~~~~~~~~l~~H~~~V~~~~~~~-~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~   82 (277)
                      .+|......+.||...|.++.|.| .+.+|+|+|.|+.|+||++.. ++++++|.+|..+|.+++|++++..++|+|.|+
T Consensus       201 ~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~  280 (503)
T KOG0282|consen  201 YLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDR  280 (503)
T ss_pred             eccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecce
Confidence            347777788999999999999999 899999999999999999876 889999999999999999999999999999999


Q ss_pred             cEEEEECCCCceeEEeecccCceeEEEEecCC-CEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec--CCeE
Q 023772           83 QIFYWDVSTGRVIRKFRGHESEVNAVKFNEYS-SVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT--KTEI  159 (277)
Q Consensus        83 ~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  159 (277)
                      .+|+||+++|+++..|. -...+.++.|+|++ +.++.|+.|+.|+.||++++.  -++.+..+...+..+.+-  +..+
T Consensus       281 ~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k--vvqeYd~hLg~i~~i~F~~~g~rF  357 (503)
T KOG0282|consen  281 FLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK--VVQEYDRHLGAILDITFVDEGRRF  357 (503)
T ss_pred             eeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH--HHHHHHhhhhheeeeEEccCCceE
Confidence            99999999999998886 35577899999998 899999999999999999764  345556677777777764  4569


Q ss_pred             EEeecCCcEEEEEccCCccccc---CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCC---CceEEEEeccccceeeee
Q 023772          160 IGGSVDGTVRTFDIRVGRELSD---DLGQPVNCISMSNDGNCILASCLDSTLRLLDRST---GELLQEYKGHICKSFKTD  233 (277)
Q Consensus       160 ~~g~~d~~i~i~d~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~---~~~~~~~~~~~~~~~~~~  233 (277)
                      ++.+.|+.+++|+.+....+..   ...+...|+..+|+++++++-+.|+.|.+|....   .+..+.|.||....+.+.
T Consensus       358 issSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~  437 (503)
T KOG0282|consen  358 ISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQ  437 (503)
T ss_pred             eeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceee
Confidence            9999999999999987654432   3345778999999999999999999999998643   233457889988889999


Q ss_pred             eEecCCCceEEeecCCCeEEEEECcCccceeeeccCcceeEe
Q 023772          234 CCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKL  275 (277)
Q Consensus       234 ~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~  275 (277)
                      +.|||||.+|++|+.||.+++||.++-+++.++++|+.++..
T Consensus       438 v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~  479 (503)
T KOG0282|consen  438 VDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIG  479 (503)
T ss_pred             EEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEE
Confidence            999999999999999999999999999999999999876643

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.5e-38  Score=235.17  Aligned_cols=254  Identities=18%  Similarity=0.293  Sum_probs=211.7

Q ss_pred             eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCe--eEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 023772           14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI--HIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVST   91 (277)
Q Consensus        14 l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~   91 (277)
                      ++...+.|+.+...|+++.|++++. ..||+||+.++.  ++.+|++|.+.|+++.|..+++.++|||.||++|+||+..
T Consensus        36 iqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~  114 (311)
T KOG0315|consen   36 IQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS  114 (311)
T ss_pred             EecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccC
Confidence            4445677999999999999999887 799999998764  5899999999999999999999999999999999999998


Q ss_pred             CceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEE--EEecCCeEEEeecCCcEE
Q 023772           92 GRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMS--VCLTKTEIIGGSVDGTVR  169 (277)
Q Consensus        92 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~d~~i~  169 (277)
                      -.+.+.|. |.++|+++..+|+...|++|..+|.|++||+.........+ .....++.+  +.+++..++.+...|...
T Consensus       115 ~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li-Pe~~~~i~sl~v~~dgsml~a~nnkG~cy  192 (311)
T KOG0315|consen  115 LSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI-PEDDTSIQSLTVMPDGSMLAAANNKGNCY  192 (311)
T ss_pred             cccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC-CCCCcceeeEEEcCCCcEEEEecCCccEE
Confidence            66666665 78999999999999999999999999999998754322221 222234444  445667788888999999


Q ss_pred             EEEccCCcccc--------cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCC-ceEEEEeccccceeeeeeEecCCC
Q 023772          170 TFDIRVGRELS--------DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTG-ELLQEYKGHICKSFKTDCCLTNSD  240 (277)
Q Consensus       170 i~d~~~~~~~~--------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  240 (277)
                      +|++.......        ..+...+....+||++++|+++|.|.+++||+.... +....+.+|.  ....+|+||.|+
T Consensus       193 vW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~--rWvWdc~FS~dg  270 (311)
T KOG0315|consen  193 VWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQ--RWVWDCAFSADG  270 (311)
T ss_pred             EEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCC--ceEEeeeeccCc
Confidence            99987643221        123446788899999999999999999999999877 6666777874  567889999999


Q ss_pred             ceEEeecCCCeEEEEECcCccceeeeccCcce
Q 023772          241 AHVTGGSEDGYIYFWDLVDASVVAKFKAHSLV  272 (277)
Q Consensus       241 ~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~  272 (277)
                      .||++|+.|+.+++|+++.++.+.+..+|-.+
T Consensus       271 ~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~  302 (311)
T KOG0315|consen  271 EYLVTASSDHTARLWDLSAGKEVRQYQGHHKA  302 (311)
T ss_pred             cEEEecCCCCceeecccccCceeeecCCcccc
Confidence            99999999999999999999999999998544

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.8e-39  Score=273.24  Aligned_cols=243  Identities=23%  Similarity=0.391  Sum_probs=210.4

Q ss_pred             eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC-------------------------------eeEEEEeccCccE
Q 023772           15 KGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG-------------------------------IHIKTYKSHGREV   63 (277)
Q Consensus        15 ~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~-------------------------------~~~~~~~~h~~~v   63 (277)
                      .--...++|+.|++|++.||.|-.|-.|++|.+.+.                               ...+++-+|+++|
T Consensus       375 ~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPV  454 (707)
T KOG0263|consen  375 HNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPV  454 (707)
T ss_pred             EEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCce
Confidence            334456999999999999999999999999986521                               1234577999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeec
Q 023772           64 RDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIID  143 (277)
Q Consensus        64 ~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  143 (277)
                      ..+.|+|+.++|+++|.|+++++|.+.+..++-.+++|..||+.+.|+|.|-+++|+|.|++-++|......  +..++.
T Consensus       455 yg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~--PlRifa  532 (707)
T KOG0263|consen  455 YGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK--PLRIFA  532 (707)
T ss_pred             eeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC--chhhhc
Confidence            999999999999999999999999999999998999999999999999999999999999999999987644  444555


Q ss_pred             cccCcEEEEEec--CCeEEEeecCCcEEEEEccCCcccc--cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceE
Q 023772          144 SFQDSVMSVCLT--KTEIIGGSVDGTVRTFDIRVGRELS--DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELL  219 (277)
Q Consensus       144 ~~~~~~~~~~~~--~~~~~~g~~d~~i~i~d~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~  219 (277)
                      +|..-+.++.+.  .+++++|+.|+++|+||..++..++  ..+..+|.+++|||+|.+|++|+.|+.|++||+.+++++
T Consensus       533 ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v  612 (707)
T KOG0263|consen  533 GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLV  612 (707)
T ss_pred             ccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcch
Confidence            666655555555  5569999999999999999887544  456789999999999999999999999999999999999


Q ss_pred             EEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCcc
Q 023772          220 QEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDAS  261 (277)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~  261 (277)
                      ..+.+|..  .+.+..|+.+|..||+|+.|++|++||+..-.
T Consensus       613 ~~l~~Ht~--ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  613 KQLKGHTG--TIYSLSFSRDGNVLASGGADNSVRLWDLTKVI  652 (707)
T ss_pred             hhhhcccC--ceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence            99999954  45666789999999999999999999987643

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.9e-37  Score=233.09  Aligned_cols=235  Identities=22%  Similarity=0.363  Sum_probs=209.6

Q ss_pred             cCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC------eeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772           17 HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG------IHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        17 H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~------~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~   90 (277)
                      -..-|..++|+|.|++++.||-|....||++.+.      ...+.+.+|.+.+.++.|.. ...|+|+|.|.++.+||++
T Consensus        96 ~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie  174 (343)
T KOG0286|consen   96 PSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIE  174 (343)
T ss_pred             CceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcc
Confidence            3456889999999999999999999999998754      34567999999999999987 5789999999999999999


Q ss_pred             CCceeEEeecccCceeEEEEec-CCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCe--EEEeecCCc
Q 023772           91 TGRVIRKFRGHESEVNAVKFNE-YSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE--IIGGSVDGT  167 (277)
Q Consensus        91 ~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~d~~  167 (277)
                      +++.+..|.+|...|.++++.| +++.+++|+-|+..++||+|.+  ...+.+..|..-|.++.+-|+.  +++|+.|++
T Consensus       175 ~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~--~c~qtF~ghesDINsv~ffP~G~afatGSDD~t  252 (343)
T KOG0286|consen  175 TGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG--QCVQTFEGHESDINSVRFFPSGDAFATGSDDAT  252 (343)
T ss_pred             cceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc--ceeEeecccccccceEEEccCCCeeeecCCCce
Confidence            9999999999999999999999 8999999999999999999976  4578888998888888876654  999999999


Q ss_pred             EEEEEccCCcccccCC----CCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceE
Q 023772          168 VRTFDIRVGRELSDDL----GQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHV  243 (277)
Q Consensus       168 i~i~d~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  243 (277)
                      .|+||+|..+++....    ..+|++++||-.|++|++|..|.++.+||.-.++.+..+.||.+++  .....+|||..+
T Consensus       253 cRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRv--Scl~~s~DG~av  330 (343)
T KOG0286|consen  253 CRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRV--SCLGVSPDGMAV  330 (343)
T ss_pred             eEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCee--EEEEECCCCcEE
Confidence            9999999987765432    3579999999999999999999999999999999999999997654  444578999999


Q ss_pred             EeecCCCeEEEEE
Q 023772          244 TGGSEDGYIYFWD  256 (277)
Q Consensus       244 ~sgs~d~~i~iwd  256 (277)
                      ++||.|.++|||.
T Consensus       331 ~TgSWDs~lriW~  343 (343)
T KOG0286|consen  331 ATGSWDSTLRIWA  343 (343)
T ss_pred             EecchhHheeecC
Confidence            9999999999994

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.4e-36  Score=230.53  Aligned_cols=262  Identities=22%  Similarity=0.340  Sum_probs=223.5

Q ss_pred             ceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeC--CCcEEEEEC
Q 023772           12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGG--DRQIFYWDV   89 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~--d~~v~~wd~   89 (277)
                      ..++--.+.|+++.|+++|..|++++.|.++++||..++++++++..+...|..++|......++.++.  |.+|+..++
T Consensus         8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl   87 (311)
T KOG1446|consen    8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL   87 (311)
T ss_pred             cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEe
Confidence            345556789999999999999999999999999999999999999998889999999888777877776  899999999


Q ss_pred             CCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCCcEE
Q 023772           90 STGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVR  169 (277)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~  169 (277)
                      .+.+.++.|.+|...|+++..+|.+..+++++.|++|++||++......  .+.....++.++.+.+-.+|++.....|+
T Consensus        88 ~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg--~l~~~~~pi~AfDp~GLifA~~~~~~~Ik  165 (311)
T KOG1446|consen   88 HDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQG--LLNLSGRPIAAFDPEGLIFALANGSELIK  165 (311)
T ss_pred             ecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCce--EEecCCCcceeECCCCcEEEEecCCCeEE
Confidence            9999999999999999999999999999999999999999999654432  33344556667666666677777777999


Q ss_pred             EEEccCCc-cc------ccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccce-eeeeeEecCCCc
Q 023772          170 TFDIRVGR-EL------SDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKS-FKTDCCLTNSDA  241 (277)
Q Consensus       170 i~d~~~~~-~~------~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  241 (277)
                      +||+|.-. ..      .......++.|.|||+|++|+.+...+.+++.|.-+|.....+.++.... ....++++||+.
T Consensus       166 LyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~  245 (311)
T KOG1446|consen  166 LYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSK  245 (311)
T ss_pred             EEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCc
Confidence            99998642 11      11223578999999999999999999999999999999999998875432 457889999999


Q ss_pred             eEEeecCCCeEEEEECcCccceeeecc-CcceeEe
Q 023772          242 HVTGGSEDGYIYFWDLVDASVVAKFKA-HSLVVKL  275 (277)
Q Consensus       242 ~l~sgs~d~~i~iwd~~~~~~~~~~~~-h~~~v~~  275 (277)
                      ++++|+.||.|.+|++++++.+.++++ +..++++
T Consensus       246 Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~  280 (311)
T KOG1446|consen  246 FVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSC  280 (311)
T ss_pred             EEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccc
Confidence            999999999999999999999999998 5666554

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.9e-38  Score=243.48  Aligned_cols=243  Identities=25%  Similarity=0.419  Sum_probs=210.0

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCC-CeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHR-GIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDV   89 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~   89 (277)
                      ...|+||.++|..++|+..|++|++||.|-.+++||..+ .++++...+|...|.++.|-|.+.+|++++.|.+||.|++
T Consensus       143 e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~  222 (406)
T KOG0295|consen  143 ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWEC  222 (406)
T ss_pred             hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEec
Confidence            456899999999999999999999999999999999876 5678888999999999999999999999999999999999


Q ss_pred             CCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec------------C-
Q 023772           90 STGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT------------K-  156 (277)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------------~-  156 (277)
                      .++.++.+|.+|...|..++.+.|+.++++|+.|.++++|-..+.+.+..  +..|+.++-.+.+.            + 
T Consensus       223 ~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~--lR~hEh~vEci~wap~~~~~~i~~at~~  300 (406)
T KOG0295|consen  223 DTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAE--LREHEHPVECIAWAPESSYPSISEATGS  300 (406)
T ss_pred             ccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhh--hhccccceEEEEecccccCcchhhccCC
Confidence            99999999999999999999999999999999999999998876533322  22333333333321            1 


Q ss_pred             ----CeEEEeecCCcEEEEEccCCcccccC--CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEecccccee
Q 023772          157 ----TEIIGGSVDGTVRTFDIRVGRELSDD--LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSF  230 (277)
Q Consensus       157 ----~~~~~g~~d~~i~i~d~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~  230 (277)
                          ..+.+++.|++|++||+.++..+.+.  +..-|..++|+|.|+||+++.+|+++++||++++++...+..|...+ 
T Consensus       301 ~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfv-  379 (406)
T KOG0295|consen  301 TNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFV-  379 (406)
T ss_pred             CCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCccee-
Confidence                25889999999999999999887764  55679999999999999999999999999999999999988886544 


Q ss_pred             eeeeEecCCCceEEeecCCCeEEEEEC
Q 023772          231 KTDCCLTNSDAHVTGGSEDGYIYFWDL  257 (277)
Q Consensus       231 ~~~~~~~~~~~~l~sgs~d~~i~iwd~  257 (277)
                       ....|..+-.++++|+-|..+++|..
T Consensus       380 -t~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  380 -TSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             -EEEecCCCCceEEeccccceeeeeec
Confidence             44557777889999999999999975

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.8e-36  Score=241.85  Aligned_cols=246  Identities=24%  Similarity=0.453  Sum_probs=214.2

Q ss_pred             cccccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEE
Q 023772            7 PRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFY   86 (277)
Q Consensus         7 ~~~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~   86 (277)
                      +.....+|..|++||.++.|+.+|.||++++.|+++.+||..+|+....|..|..+-..+.|.. +..+++++.|+.|++
T Consensus       265 ~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V  343 (524)
T KOG0273|consen  265 DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS-NDEFATSSTDGCIHV  343 (524)
T ss_pred             CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec-CceEeecCCCceEEE
Confidence            4445667889999999999999999999999999999999999999999999998877888874 468999999999999


Q ss_pred             EECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC----------
Q 023772           87 WDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK----------  156 (277)
Q Consensus        87 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~----------  156 (277)
                      +-+....++.++.+|.++|+++.|+|.+.+|+|+|.|++++||+.....  ...-++.|...++.+.++|          
T Consensus       344 ~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~--~~~~l~~Hskei~t~~wsp~g~v~~n~~~  421 (524)
T KOG0273|consen  344 CKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN--SVHDLQAHSKEIYTIKWSPTGPVTSNPNM  421 (524)
T ss_pred             EEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCc--chhhhhhhccceeeEeecCCCCccCCCcC
Confidence            9999999999999999999999999999999999999999999975432  2223445555566655544          


Q ss_pred             -CeEEEeecCCcEEEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeee
Q 023772          157 -TEIIGGSVDGTVRTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTD  233 (277)
Q Consensus       157 -~~~~~g~~d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  233 (277)
                       ..+++++.|.++++||...+.++..  .+..+|.+++|+|+|+++++|+.||.+.+|+.+++++++.+.+.   ..+..
T Consensus       422 ~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~---~~Ife  498 (524)
T KOG0273|consen  422 NLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT---GGIFE  498 (524)
T ss_pred             CceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCC---CeEEE
Confidence             3488999999999999999887755  56789999999999999999999999999999999999999875   33566


Q ss_pred             eEecCCCceEEeecCCCeEEEEECc
Q 023772          234 CCLTNSDAHVTGGSEDGYIYFWDLV  258 (277)
Q Consensus       234 ~~~~~~~~~l~sgs~d~~i~iwd~~  258 (277)
                      .|++.+|.+|..+.+|+.+++-|++
T Consensus       499 l~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  499 LCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             EEEcCCCCEEEEEecCCCceEEEec
Confidence            7889999999999999999998875

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.4e-35  Score=239.66  Aligned_cols=263  Identities=19%  Similarity=0.346  Sum_probs=209.6

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEe---ccCccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYK---SHGREVRDVHVTADNSKLISCGGDRQIFYW   87 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~t~s~d~~v~~w   87 (277)
                      ...++.|..-|.|++|+|||++++|+|.||++.+||-.+|+.+..+.   +|.+.|.++.|+||+++++|+|.|+++|+|
T Consensus       183 k~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIW  262 (603)
T KOG0318|consen  183 KSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIW  262 (603)
T ss_pred             eecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEE
Confidence            34567899999999999999999999999999999999999999998   899999999999999999999999999999


Q ss_pred             ECCCCceeEEe-------------------------------------------ecccCceeEEEEecCCCEEEEEeCCC
Q 023772           88 DVSTGRVIRKF-------------------------------------------RGHESEVNAVKFNEYSSVVVSAGYDQ  124 (277)
Q Consensus        88 d~~~~~~~~~~-------------------------------------------~~h~~~v~~i~~~~~~~~l~s~~~d~  124 (277)
                      |+.+.++++++                                           .+|...|+++..+++++.|++|+.||
T Consensus       263 dVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG  342 (603)
T KOG0318|consen  263 DVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDG  342 (603)
T ss_pred             EeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCc
Confidence            99877665443                                           46999999999999999999999999


Q ss_pred             cEEEEeCccCCCcce-------Ee--e-----------------------------------------------------
Q 023772          125 SLRAWDCRSHSTEPI-------QI--I-----------------------------------------------------  142 (277)
Q Consensus       125 ~i~iwd~~~~~~~~~-------~~--~-----------------------------------------------------  142 (277)
                      .|.-|+...+...++       ++  +                                                     
T Consensus       343 ~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv  422 (603)
T KOG0318|consen  343 HINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVV  422 (603)
T ss_pred             eEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEE
Confidence            999999754211000       00  0                                                     


Q ss_pred             ---------c----------cccCcEEEEEecCCeEEEeecCCcEEEEEccCCcc----cccCCCCCeeEEEEeCCCCEE
Q 023772          143 ---------D----------SFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRE----LSDDLGQPVNCISMSNDGNCI  199 (277)
Q Consensus       143 ---------~----------~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~----~~~~~~~~v~~~~~s~~~~~l  199 (277)
                               .          .....+.++.+++..++.|+.|+++++|.+.....    ....+..+++++++||++.||
T Consensus       423 ~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yl  502 (603)
T KOG0318|consen  423 ACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYL  502 (603)
T ss_pred             EecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEE
Confidence                     0          00111223334456688999999999999976442    233567899999999999999


Q ss_pred             EEEecCCeEEEEECCCCceEE-EEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccc-eeeeccCcceeEe
Q 023772          200 LASCLDSTLRLLDRSTGELLQ-EYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASV-VAKFKAHSLVVKL  275 (277)
Q Consensus       200 ~~~~~d~~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~-~~~~~~h~~~v~~  275 (277)
                      +++...+.+.+||+.+.+... .+.-|..  .+...+++|++.++|+||.|.+|.||+++...- +....+|..-|.-
T Consensus       503 a~~Da~rkvv~yd~~s~~~~~~~w~FHta--kI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~  578 (603)
T KOG0318|consen  503 AAGDASRKVVLYDVASREVKTNRWAFHTA--KINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNS  578 (603)
T ss_pred             EEeccCCcEEEEEcccCceecceeeeeee--eEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCcee
Confidence            999999999999998876633 2333543  345567899999999999999999999987533 3434478765554

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=3.4e-36  Score=240.24  Aligned_cols=247  Identities=19%  Similarity=0.328  Sum_probs=215.9

Q ss_pred             CcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe
Q 023772           19 GAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKF   98 (277)
Q Consensus        19 ~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~   98 (277)
                      ..|++++|+.+|..|++|+.||.+|||+. +|.++.++..|.+||.++.|+.++.+|++++.|+++-+||..+++....|
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f  314 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQF  314 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEee
Confidence            56999999999999999999999999995 57788999999999999999999999999999999999999999999999


Q ss_pred             ecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC--eEEEeecCCcEEEEEccCC
Q 023772           99 RGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--EIIGGSVDGTVRTFDIRVG  176 (277)
Q Consensus        99 ~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~i~d~~~~  176 (277)
                      .-|..+--.+.|-.+ ..+++++.|+.|+++.+...  .|+..+..|..+|.++.++++  .|++++.|+++++|.+...
T Consensus       315 ~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~--~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~  391 (524)
T KOG0273|consen  315 EFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGED--RPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS  391 (524)
T ss_pred             eeccCCccceEEecC-ceEeecCCCceEEEEEecCC--CcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC
Confidence            999988667888654 47788999999999988654  456666779999999999864  4899999999999998766


Q ss_pred             ccccc--CCCCCeeEEEEeCC---------CCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEe
Q 023772          177 RELSD--DLGQPVNCISMSND---------GNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTG  245 (277)
Q Consensus       177 ~~~~~--~~~~~v~~~~~s~~---------~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  245 (277)
                      .....  .+...|..+.|+|+         +..+++++.|+++++||...+.++..|+.|..+++.  .+++|+++++|+
T Consensus       392 ~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVys--vafS~~g~ylAs  469 (524)
T KOG0273|consen  392 NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYS--VAFSPNGRYLAS  469 (524)
T ss_pred             cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEE--EEecCCCcEEEe
Confidence            54433  35567888999885         457899999999999999999999999999766554  568999999999


Q ss_pred             ecCCCeEEEEECcCccceeeeccCcc
Q 023772          246 GSEDGYIYFWDLVDASVVAKFKAHSL  271 (277)
Q Consensus       246 gs~d~~i~iwd~~~~~~~~~~~~h~~  271 (277)
                      |+.||.|.+|+++++++++.+++-..
T Consensus       470 Gs~dg~V~iws~~~~~l~~s~~~~~~  495 (524)
T KOG0273|consen  470 GSLDGCVHIWSTKTGKLVKSYQGTGG  495 (524)
T ss_pred             cCCCCeeEeccccchheeEeecCCCe
Confidence            99999999999999999999987543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.7e-37  Score=252.81  Aligned_cols=252  Identities=18%  Similarity=0.326  Sum_probs=227.3

Q ss_pred             eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 023772           13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTG   92 (277)
Q Consensus        13 ~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~   92 (277)
                      .+..|+..|.++.|+|...+++++-..|.|.|||.++...++.|+...-||+++.|.+..+.+++|+.|..|++|+.+++
T Consensus         8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~   87 (794)
T KOG0276|consen    8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG   87 (794)
T ss_pred             HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccc
Confidence            34569999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC---eEEEeecCCcEE
Q 023772           93 RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT---EIIGGSVDGTVR  169 (277)
Q Consensus        93 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~d~~i~  169 (277)
                      +.+.+|.+|..-|++++.+|...+++|+|.|-+|++||-... -...+++.+|...++.++++|+   .+++++.|++|+
T Consensus        88 ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~-wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVK  166 (794)
T KOG0276|consen   88 EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE-WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVK  166 (794)
T ss_pred             eeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc-eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEE
Confidence            999999999999999999999999999999999999998754 3467788999999999999874   499999999999


Q ss_pred             EEEccCCccccc--CCCCCeeEEEEeCCC--CEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEe
Q 023772          170 TFDIRVGRELSD--DLGQPVNCISMSNDG--NCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTG  245 (277)
Q Consensus       170 i~d~~~~~~~~~--~~~~~v~~~~~s~~~--~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  245 (277)
                      +|.+.+.....+  .+..-|+|+++-+.|  .+|++|+.|.++++||.++..|++++.||.+.+  ...+|.|.-.++++
T Consensus       167 VWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nv--s~v~fhp~lpiiis  244 (794)
T KOG0276|consen  167 VWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNV--SFVFFHPELPIIIS  244 (794)
T ss_pred             EEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccc--eEEEecCCCcEEEE
Confidence            999987765444  345579999998755  599999999999999999999999999997643  34578898899999


Q ss_pred             ecCCCeEEEEECcCccceeeec
Q 023772          246 GSEDGYIYFWDLVDASVVAKFK  267 (277)
Q Consensus       246 gs~d~~i~iwd~~~~~~~~~~~  267 (277)
                      ||+||++|||+..+.++++.+.
T Consensus       245 gsEDGTvriWhs~Ty~lE~tLn  266 (794)
T KOG0276|consen  245 GSEDGTVRIWNSKTYKLEKTLN  266 (794)
T ss_pred             ecCCccEEEecCcceehhhhhh
Confidence            9999999999999988877665

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=3.4e-38  Score=247.60  Aligned_cols=253  Identities=22%  Similarity=0.320  Sum_probs=213.8

Q ss_pred             cCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q 023772           17 HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIR   96 (277)
Q Consensus        17 H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~   96 (277)
                      -+.+|..++|.|+|+.|++|+.-|.+.+|+..+......+++|..+|+++.|++++.++++|+.+|.||+|+..-..+..
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~  174 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI  174 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH
Confidence            45689999999999999999999999999986554445567899999999999999999999999999999987655544


Q ss_pred             EeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCe--EEEeecCCcEEEEEcc
Q 023772           97 KFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE--IIGGSVDGTVRTFDIR  174 (277)
Q Consensus        97 ~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~d~~i~i~d~~  174 (277)
                      ....|...|++++|+|++..|+|||.||+|+|||......+.+  +.+|.--+.++.+.|..  +++|+.|..|++||.+
T Consensus       175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~v--L~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr  252 (464)
T KOG0284|consen  175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERV--LRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR  252 (464)
T ss_pred             hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhe--eccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence            4445569999999999999999999999999999887655444  46666677778777654  8999999999999999


Q ss_pred             CCcccccC--CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecC-CCceEEeecCCCe
Q 023772          175 VGRELSDD--LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN-SDAHVTGGSEDGY  251 (277)
Q Consensus       175 ~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~sgs~d~~  251 (277)
                      +++++...  +...|..+.|+|++++|+++|.|..+++||+++.+.++.+++|....  .+..++| ...++.+|+.||.
T Consensus       253 Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv--~~~~WhP~~~~lftsgg~Dgs  330 (464)
T KOG0284|consen  253 SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDV--TSLTWHPLNESLFTSGGSDGS  330 (464)
T ss_pred             CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhh--eeeccccccccceeeccCCCc
Confidence            99988764  45689999999999999999999999999999989999999997654  3344566 4567889999999


Q ss_pred             EEEEECcCccceeeec-cCccee
Q 023772          252 IYFWDLVDASVVAKFK-AHSLVV  273 (277)
Q Consensus       252 i~iwd~~~~~~~~~~~-~h~~~v  273 (277)
                      |..|.+...+.+..+. +|...|
T Consensus       331 vvh~~v~~~~p~~~i~~AHd~~i  353 (464)
T KOG0284|consen  331 VVHWVVGLEEPLGEIPPAHDGEI  353 (464)
T ss_pred             eEEEeccccccccCCCcccccce
Confidence            9999999666666665 777655

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=4e-35  Score=235.78  Aligned_cols=261  Identities=32%  Similarity=0.535  Sum_probs=223.4

Q ss_pred             ceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 023772           12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVST   91 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~   91 (277)
                      ..+++|.++|.+++|+|+++++++++.|+.+++|+..++.....+..|...+..+.|.++++++++++.|+.+++||+.+
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~   82 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET   82 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence            45679999999999999999999999999999999998888888999999999999999999999999999999999999


Q ss_pred             CceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEeecCCcEE
Q 023772           92 GRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVR  169 (277)
Q Consensus        92 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~d~~i~  169 (277)
                      ++.+..+..|...+.++.+.++++++++++.|+.+.+||++..  .....+..+...+..+.+.+  ..+++++.|+.++
T Consensus        83 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~  160 (289)
T cd00200          83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG--KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK  160 (289)
T ss_pred             ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc--EEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence            8888889999999999999999889998888999999999743  23444555667788888876  3355666699999


Q ss_pred             EEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeec
Q 023772          170 TFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGS  247 (277)
Q Consensus       170 i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs  247 (277)
                      +||++.++....  .+...+.++.|+|+++.+++++.|+.+++||++.++.+..+..|..  ......+++++.++++++
T Consensus       161 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~  238 (289)
T cd00200         161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN--GVNSVAFSPDGYLLASGS  238 (289)
T ss_pred             EEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCC--ceEEEEEcCCCcEEEEEc
Confidence            999987654432  3445799999999999999999999999999999888888866643  345567888888899988


Q ss_pred             CCCeEEEEECcCccceeeeccCcceeEee
Q 023772          248 EDGYIYFWDLVDASVVAKFKAHSLVVKLL  276 (277)
Q Consensus       248 ~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  276 (277)
                      .|+.|++||+.+++.+..+++|...|..+
T Consensus       239 ~~~~i~i~~~~~~~~~~~~~~~~~~i~~~  267 (289)
T cd00200         239 EDGTIRVWDLRTGECVQTLSGHTNSVTSL  267 (289)
T ss_pred             CCCcEEEEEcCCceeEEEccccCCcEEEE
Confidence            89999999999999999999988766543

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=3e-37  Score=259.86  Aligned_cols=203  Identities=26%  Similarity=0.504  Sum_probs=187.8

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~   90 (277)
                      ...|.||.+||..+.|+|+.++|+|||+|+++|+|.+.+..++-.+++|..||+.+.|+|-|=+++|+|.|++.++|...
T Consensus       444 ~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d  523 (707)
T KOG0263|consen  444 SRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD  523 (707)
T ss_pred             eEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecc
Confidence            34588999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC--eEEEeecCCcE
Q 023772           91 TGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--EIIGGSVDGTV  168 (277)
Q Consensus        91 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i  168 (277)
                      ...+.+.|.+|.+.|.++.|+|+..+++|||.|.++++||..++..  +.++.+|..++.++.+++.  .+++|+.|+.|
T Consensus       524 ~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~--VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I  601 (707)
T KOG0263|consen  524 HNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS--VRIFTGHKGPVTALAFSPCGRYLASGDEDGLI  601 (707)
T ss_pred             cCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE--EEEecCCCCceEEEEEcCCCceEeecccCCcE
Confidence            9999999999999999999999999999999999999999987654  6667889999998888764  59999999999


Q ss_pred             EEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCC
Q 023772          169 RTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRST  215 (277)
Q Consensus       169 ~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~  215 (277)
                      .+||+..++.+..  .+...|.++.|+.+|..|++|+.|.+|++||+..
T Consensus       602 ~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  602 KIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             EEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence            9999999876543  3466899999999999999999999999999854

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=4.1e-36  Score=256.37  Aligned_cols=247  Identities=29%  Similarity=0.537  Sum_probs=208.2

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcC-CCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNP-HRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDV   89 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~   89 (277)
                      ...+.+|...|..++|+|+++++++++.|+++||||+ ..+..++++++|...|++++|+|+++++++|+.|++|++||+
T Consensus       196 ~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~  275 (456)
T KOG0266|consen  196 LRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDV  275 (456)
T ss_pred             hccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEec
Confidence            4456899999999999999999999999999999999 556899999999999999999999999999999999999999


Q ss_pred             CCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccC--cEEEEEecC--CeEEEeecC
Q 023772           90 STGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQD--SVMSVCLTK--TEIIGGSVD  165 (277)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~g~~d  165 (277)
                      +++++++.+.+|..+|++++|+++++++++++.|+.|++||...........+.....  .+..+.+++  .+++++..|
T Consensus       276 ~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d  355 (456)
T KOG0266|consen  276 RTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLD  355 (456)
T ss_pred             cCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCC
Confidence            9999999999999999999999999999999999999999998765211122222222  466676654  569999999


Q ss_pred             CcEEEEEccCCcccccCCC---C--CeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCC
Q 023772          166 GTVRTFDIRVGRELSDDLG---Q--PVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSD  240 (277)
Q Consensus       166 ~~i~i~d~~~~~~~~~~~~---~--~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (277)
                      +.+++||++.+........   .  .+.+..+++.+.++++|+.|+.|++||..++..+..+.+|. ......+.+++..
T Consensus       356 ~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~  434 (456)
T KOG0266|consen  356 RTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTE  434 (456)
T ss_pred             CeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCc
Confidence            9999999997765443222   2  34445667899999999999999999999999899999884 3344566778888


Q ss_pred             ceEEeec--CCCeEEEEECc
Q 023772          241 AHVTGGS--EDGYIYFWDLV  258 (277)
Q Consensus       241 ~~l~sgs--~d~~i~iwd~~  258 (277)
                      .++++++  .|+.+++|...
T Consensus       435 ~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  435 NLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             CeeeecCcCCCceEEEecCC
Confidence            9999887  79999999764

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=9.1e-36  Score=249.81  Aligned_cols=253  Identities=21%  Similarity=0.378  Sum_probs=215.1

Q ss_pred             eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 023772           13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTG   92 (277)
Q Consensus        13 ~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~   92 (277)
                      .++||...+++++++|||++++||++||.|||||...+-|..+|..|...|+.+.|+..++.++++|-||+|+.||+...
T Consensus       345 KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY  424 (893)
T KOG0291|consen  345 KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY  424 (893)
T ss_pred             eccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeEEeecc-cCceeEEEEecCCCEEEEEeCCC-cEEEEeCccCCCcceEeeccccCcEEEEEec--CCeEEEeecCCcE
Q 023772           93 RVIRKFRGH-ESEVNAVKFNEYSSVVVSAGYDQ-SLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT--KTEIIGGSVDGTV  168 (277)
Q Consensus        93 ~~~~~~~~h-~~~v~~i~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~d~~i  168 (277)
                      +.-++|..- +.+..+++..|.|.++..|+.|. .|++|+.++++  ...++.+|.++|..++++  +..+++|+.|++|
T Consensus       425 rNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq--llDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTV  502 (893)
T KOG0291|consen  425 RNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ--LLDILSGHEGPVSGLSFSPDGSLLASGSWDKTV  502 (893)
T ss_pred             ceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe--eeehhcCCCCcceeeEEccccCeEEeccccceE
Confidence            988888743 34557888889999999998875 49999998764  466788999999876665  5669999999999


Q ss_pred             EEEEccCCc--ccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEecc------------------ccc
Q 023772          169 RTFDIRVGR--ELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGH------------------ICK  228 (277)
Q Consensus       169 ~i~d~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~------------------~~~  228 (277)
                      |+||+-...  .-.....+.+..++|+|+|+.|+++..||.|.+||...+.....+.+.                  ...
T Consensus       503 RiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~  582 (893)
T KOG0291|consen  503 RIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKG  582 (893)
T ss_pred             EEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccC
Confidence            999986542  112234567899999999999999999999999998776554333321                  111


Q ss_pred             eeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeec
Q 023772          229 SFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFK  267 (277)
Q Consensus       229 ~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~  267 (277)
                      ...+..++++||.++.+|+..+.|++|++.++.++++++
T Consensus       583 K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfq  621 (893)
T KOG0291|consen  583 KTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQ  621 (893)
T ss_pred             CceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEE
Confidence            344667899999999999999999999999999999987

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=6.3e-38  Score=242.11  Aligned_cols=233  Identities=22%  Similarity=0.390  Sum_probs=201.0

Q ss_pred             ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 023772           16 GHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVI   95 (277)
Q Consensus        16 ~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~   95 (277)
                      .....|.|+++..  ..++||..|.+|+|||.++-.+++.+.+|.+.|.|+.+.  .+.|++||.|.+|++||+++++++
T Consensus       195 e~skgVYClQYDD--~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l  270 (499)
T KOG0281|consen  195 ENSKGVYCLQYDD--EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPL  270 (499)
T ss_pred             ccCCceEEEEecc--hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchh
Confidence            4567899999864  478999999999999999999999999999999999995  568999999999999999999999


Q ss_pred             EEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcce-EeeccccCcEEEEEecCCeEEEeecCCcEEEEEcc
Q 023772           96 RKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPI-QIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIR  174 (277)
Q Consensus        96 ~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~  174 (277)
                      .++-+|...|..+.|+.  .+++|++.|.++.+||+..+..... ..+.+|...+..+.++..++++++.|++|++|++.
T Consensus       271 ~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~s  348 (499)
T KOG0281|consen  271 NTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTS  348 (499)
T ss_pred             hHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEecc
Confidence            99999999999999985  5999999999999999976543221 22457888899999999999999999999999999


Q ss_pred             CCcccccCCCC--CeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeE
Q 023772          175 VGRELSDDLGQ--PVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYI  252 (277)
Q Consensus       175 ~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i  252 (277)
                      +++.+....++  .|-|+.+  .|+++++|+.|.+|++||...|.+++.+.||+....    |+--+++.+++|..||.|
T Consensus       349 t~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvR----ciRFd~krIVSGaYDGki  422 (499)
T KOG0281|consen  349 TCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR----CIRFDNKRIVSGAYDGKI  422 (499)
T ss_pred             ceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhh----heeecCceeeeccccceE
Confidence            99877765544  5666655  688999999999999999999999999999975432    233468889999999999


Q ss_pred             EEEECcCc
Q 023772          253 YFWDLVDA  260 (277)
Q Consensus       253 ~iwd~~~~  260 (277)
                      ++||+..+
T Consensus       423 kvWdl~aa  430 (499)
T KOG0281|consen  423 KVWDLQAA  430 (499)
T ss_pred             EEEecccc
Confidence            99998775

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=1.9e-37  Score=243.78  Aligned_cols=268  Identities=27%  Similarity=0.439  Sum_probs=227.7

Q ss_pred             CccccccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCe--eEEEEeccCccEEEEEEcCCCCEEEEEeCCC
Q 023772            5 DLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI--HIKTYKSHGREVRDVHVTADNSKLISCGGDR   82 (277)
Q Consensus         5 ~~~~~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~   82 (277)
                      .+|..-...+..|.+.|..+.|-++...|++|+.|..|++|+...++  ...++.+..++|++++|.+++..+++++.|+
T Consensus       162 ~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~  241 (459)
T KOG0288|consen  162 TLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDK  241 (459)
T ss_pred             ccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCC
Confidence            35666677889999999999999999999999999999999976655  6778888889999999999999999999999


Q ss_pred             cEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEe
Q 023772           83 QIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGG  162 (277)
Q Consensus        83 ~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  162 (277)
                      .+++|++...+...++.+|+..|+++.|......+++|+.|.+|++||+....+....   .....+..+..++..+++|
T Consensus       242 ~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~---l~~S~cnDI~~~~~~~~Sg  318 (459)
T KOG0288|consen  242 NLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTV---LPGSQCNDIVCSISDVISG  318 (459)
T ss_pred             ceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccc---cccccccceEecceeeeec
Confidence            9999999999999999999999999999888777999999999999999864332221   1233455566667778999


Q ss_pred             ecCCcEEEEEccCCccccc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEecc--ccceeeeeeEecCC
Q 023772          163 SVDGTVRTFDIRVGRELSD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGH--ICKSFKTDCCLTNS  239 (277)
Q Consensus       163 ~~d~~i~i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~  239 (277)
                      ..|++||+||.+....... ..++.|+++..+++|..+++++.|.++.+.|+++.+..+.|...  ....-....+|||+
T Consensus       319 H~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd  398 (459)
T KOG0288|consen  319 HFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPD  398 (459)
T ss_pred             ccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCC
Confidence            9999999999998765544 45679999999999999999999999999999999888888753  22223566789999


Q ss_pred             CceEEeecCCCeEEEEECcCccceeeecc-Ccc-eeEe
Q 023772          240 DAHVTGGSEDGYIYFWDLVDASVVAKFKA-HSL-VVKL  275 (277)
Q Consensus       240 ~~~l~sgs~d~~i~iwd~~~~~~~~~~~~-h~~-~v~~  275 (277)
                      +.|+++||.||.|+||++.+++++++++. ++. +|..
T Consensus       399 ~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s  436 (459)
T KOG0288|consen  399 GSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITS  436 (459)
T ss_pred             CceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEE
Confidence            99999999999999999999999999995 333 4543

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.2e-35  Score=246.51  Aligned_cols=263  Identities=20%  Similarity=0.329  Sum_probs=215.5

Q ss_pred             cCCccccc-cceeeccCCcEEEEEEeCCCCEEEEEe-CCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeC
Q 023772            3 VSDLPRTE-ANVLKGHEGAVLAARFNGDGNYCLSCG-KDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGG   80 (277)
Q Consensus         3 ~~~~~~~~-~~~l~~H~~~V~~~~~~~~~~~l~s~s-~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~   80 (277)
                      +..+|... .+.|.--..+|..+.|+..|++|+-|+ .=|.+-||+.++...+...++|...+++++++|||++|+||+.
T Consensus       291 LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~e  370 (893)
T KOG0291|consen  291 LYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAE  370 (893)
T ss_pred             EEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccC
Confidence            34567654 455666778999999999999999764 4589999999999888999999999999999999999999999


Q ss_pred             CCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEe-eccccCcEEEEEecCCeE
Q 023772           81 DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQI-IDSFQDSVMSVCLTKTEI  159 (277)
Q Consensus        81 d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  159 (277)
                      ||+||+||..++-|..+|..|++.|+.+.|+..++.+++.+.||+|+.||+..-..-+..+ ....+..+.++.+++..+
T Consensus       371 DgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV  450 (893)
T KOG0291|consen  371 DGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELV  450 (893)
T ss_pred             CCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEE
Confidence            9999999999999999999999999999999999999999999999999986432211111 122233445555556667


Q ss_pred             EEeecCC-cEEEEEccCCcccc--cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCC-ceEEEEeccccceeeeeeE
Q 023772          160 IGGSVDG-TVRTFDIRVGRELS--DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTG-ELLQEYKGHICKSFKTDCC  235 (277)
Q Consensus       160 ~~g~~d~-~i~i~d~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~  235 (277)
                      ..|+.|. .|.+|++.+|+.+.  ..|..||.+++|+|.++.|+++|.|.+||+||+-.. ..+.++..   ....+...
T Consensus       451 ~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i---~sdvl~vs  527 (893)
T KOG0291|consen  451 CAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEI---RSDVLAVS  527 (893)
T ss_pred             EeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEee---ccceeEEE
Confidence            7777776 49999999998754  456789999999999999999999999999998433 23334432   12356678


Q ss_pred             ecCCCceEEeecCCCeEEEEECcCccceeeecc
Q 023772          236 LTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKA  268 (277)
Q Consensus       236 ~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~  268 (277)
                      |.|+|+-+++++.||+|-+||+.++.....+.+
T Consensus       528 frPdG~elaVaTldgqItf~d~~~~~q~~~Idg  560 (893)
T KOG0291|consen  528 FRPDGKELAVATLDGQITFFDIKEAVQVGSIDG  560 (893)
T ss_pred             EcCCCCeEEEEEecceEEEEEhhhceeeccccc
Confidence            999999999999999999999999888766654

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=1.5e-35  Score=230.85  Aligned_cols=266  Identities=23%  Similarity=0.370  Sum_probs=217.3

Q ss_pred             CCccccccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCC---EEEEEeC
Q 023772            4 SDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNS---KLISCGG   80 (277)
Q Consensus         4 ~~~~~~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~---~l~t~s~   80 (277)
                      +.++++.+..-..|.+-|.++...  +++|+||+.||++|+||. .|+..+++.+|.+++.+++|.-.+.   .|+++|.
T Consensus        91 ~~~~aP~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~  167 (423)
T KOG0313|consen   91 EAITAPKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASM  167 (423)
T ss_pred             EecCCCCccccccchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecC
Confidence            334333333334589999888877  789999999999999995 6889999999999999888865444   5999999


Q ss_pred             CCcEEEEECCCCce----eEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCcc-----------------------
Q 023772           81 DRQIFYWDVSTGRV----IRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRS-----------------------  133 (277)
Q Consensus        81 d~~v~~wd~~~~~~----~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~-----------------------  133 (277)
                      |.++++|-.+.++.    +...++|...|-++...+++.++++|+.|..+++|+...                       
T Consensus       168 Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~  247 (423)
T KOG0313|consen  168 DQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEG  247 (423)
T ss_pred             CceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcc
Confidence            99999999876643    344569999999999999999999999999999999321                       


Q ss_pred             CCCcceEeeccccCcEEEEEecCC-eEEEeecCCcEEEEEccCCcccccC-CCCCeeEEEEeCCCCEEEEEecCCeEEEE
Q 023772          134 HSTEPIQIIDSFQDSVMSVCLTKT-EIIGGSVDGTVRTFDIRVGRELSDD-LGQPVNCISMSNDGNCILASCLDSTLRLL  211 (277)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~d~~i~i~d~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~~w  211 (277)
                      ....++..+.+|..+|.++.+.+. .+.+++.|.+|+.||+.++...... .+.+.+|++.+|....|++|+.|+.|++|
T Consensus       248 ~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~  327 (423)
T KOG0313|consen  248 GTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLW  327 (423)
T ss_pred             cccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeec
Confidence            112356677889999999998764 4889999999999999998876654 45789999999999999999999999999


Q ss_pred             ECCCC--c-eEEEEeccccceeeeeeEecCCC-ceEEeecCCCeEEEEECcCcc-ceeeeccCcceeE
Q 023772          212 DRSTG--E-LLQEYKGHICKSFKTDCCLTNSD-AHVTGGSEDGYIYFWDLVDAS-VVAKFKAHSLVVK  274 (277)
Q Consensus       212 d~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~-~~l~sgs~d~~i~iwd~~~~~-~~~~~~~h~~~v~  274 (277)
                      |.+++  + ..+.|.+|.+  ....+.++|.+ ..+++||.|+++++||++.-. .+..+.+|..-|-
T Consensus       328 DPR~~~gs~v~~s~~gH~n--wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl  393 (423)
T KOG0313|consen  328 DPRTGDGSVVSQSLIGHKN--WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVL  393 (423)
T ss_pred             CCCCCCCceeEEeeecchh--hhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEE
Confidence            99875  3 3467889976  44555667754 558899999999999999987 8999999976554

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=8.6e-35  Score=217.26  Aligned_cols=248  Identities=26%  Similarity=0.445  Sum_probs=209.2

Q ss_pred             ceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 023772           12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVST   91 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~   91 (277)
                      -.|+||+.|++-+.|+.+|++|+||+.|.+..+|-..+|+.+.++.+|.+.|++++++.+.++++||+.|.++++||+++
T Consensus         4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t   83 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET   83 (327)
T ss_pred             cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeEEeecccCceeEEEEecCCCEEEEEeC-----CCcEEEEeCccCC-----CcceEeeccccCcEEEEEecC--CeE
Q 023772           92 GRVIRKFRGHESEVNAVKFNEYSSVVVSAGY-----DQSLRAWDCRSHS-----TEPIQIIDSFQDSVMSVCLTK--TEI  159 (277)
Q Consensus        92 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-----d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~  159 (277)
                      |+++.+++ -..+|..+.|++++++++.+..     -+.|.++|++...     .++...+..+...+....+.+  ..+
T Consensus        84 Gk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i  162 (327)
T KOG0643|consen   84 GKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI  162 (327)
T ss_pred             CcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence            99999887 5789999999999999887753     4789999987432     234555555566677766664  559


Q ss_pred             EEeecCCcEEEEEccCCccccc---CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccc----------
Q 023772          160 IGGSVDGTVRTFDIRVGRELSD---DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHI----------  226 (277)
Q Consensus       160 ~~g~~d~~i~i~d~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~----------  226 (277)
                      ++|..||.|.+||.++++++..   .+...|+.|.++++..+++++|.|.+-++||.++-+++++|.-..          
T Consensus       163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~  242 (327)
T KOG0643|consen  163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPL  242 (327)
T ss_pred             EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccc
Confidence            9999999999999999876543   456789999999999999999999999999988766655553110          


Q ss_pred             -------------------------------------------cceeeeeeEecCCCceEEeecCCCeEEEEECcCc
Q 023772          227 -------------------------------------------CKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDA  260 (277)
Q Consensus       227 -------------------------------------------~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~  260 (277)
                                                                 +...+...+++|+|+.-++|++||.||+.-.+..
T Consensus       243 ~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~  319 (327)
T KOG0643|consen  243 LDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN  319 (327)
T ss_pred             cceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence                                                       0124456789999999999999999999866543

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.9e-36  Score=253.89  Aligned_cols=241  Identities=22%  Similarity=0.452  Sum_probs=196.9

Q ss_pred             ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCC----------------------------------------------
Q 023772           16 GHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHR----------------------------------------------   49 (277)
Q Consensus        16 ~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~----------------------------------------------   49 (277)
                      +|+++|.++.|++||+||||||+|+.||||.+..                                              
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            8999999999999999999999999999996432                                              


Q ss_pred             --------------CeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEec-CC
Q 023772           50 --------------GIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNE-YS  114 (277)
Q Consensus        50 --------------~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~-~~  114 (277)
                                    .+++..|.+|.+.|.++.|+.+ ++|+++|.|++|++|++...++++.|. |.+-|++++|+| |.
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDD  422 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDD  422 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCC
Confidence                          0122356789999999999954 699999999999999999999999887 999999999998 57


Q ss_pred             CEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec--CCeEEEeecCCcEEEEEccCCccc-----cc-----C
Q 023772          115 SVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT--KTEIIGGSVDGTVRTFDIRVGREL-----SD-----D  182 (277)
Q Consensus       115 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~d~~i~i~d~~~~~~~-----~~-----~  182 (277)
                      ++|++|+.||.|+||++....   +........-|+++++.  ++..+.|+.+|.+++|+.+..+..     ..     .
T Consensus       423 ryFiSGSLD~KvRiWsI~d~~---Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~  499 (712)
T KOG0283|consen  423 RYFISGSLDGKVRLWSISDKK---VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKK  499 (712)
T ss_pred             CcEeecccccceEEeecCcCe---eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccc
Confidence            899999999999999997543   22233334566666665  556999999999999998754322     11     1


Q ss_pred             CCCCeeEEEEeCCC-CEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCcc
Q 023772          183 LGQPVNCISMSNDG-NCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDAS  261 (277)
Q Consensus       183 ~~~~v~~~~~s~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~  261 (277)
                      ....|+.+.|.|.. ..++..+.|..|||||.++..++..|+|..+..-...+.|+.||++|++|++|..||+|+.....
T Consensus       500 ~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~  579 (712)
T KOG0283|consen  500 QGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN  579 (712)
T ss_pred             cCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence            12379999998754 35788889999999999999999999987655555667889999999999999999999985433

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=9.2e-37  Score=235.70  Aligned_cols=238  Identities=24%  Similarity=0.494  Sum_probs=199.8

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~   90 (277)
                      ..+|.||.+.|+|+.|..  +.|+|||.|.+|+|||.++|++++++-+|...|..+.|+  +.+++|+|.|.++.+||+.
T Consensus       230 ~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~  305 (499)
T KOG0281|consen  230 LKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMA  305 (499)
T ss_pred             HHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEecc
Confidence            456889999999999874  599999999999999999999999999999999999997  5799999999999999997


Q ss_pred             CCc---eeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCCc
Q 023772           91 TGR---VIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGT  167 (277)
Q Consensus        91 ~~~---~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~  167 (277)
                      .-.   +.+.+.+|...|+.++|..  +++++++.|.+|++|+..+.  +.+.++.+|+..+.+....+..+++|+.|.+
T Consensus       306 sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st~--efvRtl~gHkRGIAClQYr~rlvVSGSSDnt  381 (499)
T KOG0281|consen  306 SPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTC--EFVRTLNGHKRGIACLQYRDRLVVSGSSDNT  381 (499)
T ss_pred             CchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEEEeccce--eeehhhhcccccceehhccCeEEEecCCCce
Confidence            543   4566789999999999975  59999999999999998764  5567788899999888888888999999999


Q ss_pred             EEEEEccCCcccccC--CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceE---------EEEeccccceeeeeeEe
Q 023772          168 VRTFDIRVGRELSDD--LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELL---------QEYKGHICKSFKTDCCL  236 (277)
Q Consensus       168 i~i~d~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~---------~~~~~~~~~~~~~~~~~  236 (277)
                      |++||+..|..+...  +++-|.|+.|+  .+.+++|+.||+|++||+.++..-         .....|...++.    +
T Consensus       382 IRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFr----L  455 (499)
T KOG0281|consen  382 IRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFR----L  455 (499)
T ss_pred             EEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEE----E
Confidence            999999999876654  45679999995  457999999999999999776432         222234333333    3


Q ss_pred             cCCCceEEeecCCCeEEEEECcCccc
Q 023772          237 TNSDAHVTGGSEDGYIYFWDLVDASV  262 (277)
Q Consensus       237 ~~~~~~l~sgs~d~~i~iwd~~~~~~  262 (277)
                      .-|+..+++++.|.+|.|||..++-.
T Consensus       456 QFD~fqIvsssHddtILiWdFl~~~~  481 (499)
T KOG0281|consen  456 QFDEFQIISSSHDDTILIWDFLNGPP  481 (499)
T ss_pred             eecceEEEeccCCCeEEEEEcCCCCc
Confidence            44778899999999999999988644

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2.8e-36  Score=236.87  Aligned_cols=243  Identities=23%  Similarity=0.395  Sum_probs=207.0

Q ss_pred             ceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEec-cCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772           12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKS-HGREVRDVHVTADNSKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~   90 (277)
                      .++++|..+|+++.|+++|.+++||+.||.||+|+..... ++.+.+ |...|++++|+|+..+++|+|.|++|+|||..
T Consensus       132 tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~  210 (464)
T KOG0284|consen  132 TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFR  210 (464)
T ss_pred             HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEecc
Confidence            4568999999999999999999999999999999987654 444444 45899999999999999999999999999998


Q ss_pred             CCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC--eEEEeecCCcE
Q 023772           91 TGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--EIIGGSVDGTV  168 (277)
Q Consensus        91 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i  168 (277)
                      ..+.-+.+.+|.-.|.+++|+|...+++++|.|..|++||.+++.  .+..+..|...|..+.+.++  .|++++.|..+
T Consensus       211 ~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~--cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~  288 (464)
T KOG0284|consen  211 MPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS--CLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSC  288 (464)
T ss_pred             CCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcc--hhhhhhhccceEEEEEEcCCCCeeEEccCCceE
Confidence            887777889999999999999999999999999999999999865  45567788889999988764  59999999999


Q ss_pred             EEEEccCCccccc--CCCCCeeEEEEeCC-CCEEEEEecCCeEEEEECCCCceEEEEe-ccccceeeeeeEecCCCceEE
Q 023772          169 RTFDIRVGRELSD--DLGQPVNCISMSND-GNCILASCLDSTLRLLDRSTGELLQEYK-GHICKSFKTDCCLTNSDAHVT  244 (277)
Q Consensus       169 ~i~d~~~~~~~~~--~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~  244 (277)
                      ++||+++.+++..  .+...++++.|+|- .+.|.+|+.||.|..|.+...+++..+. +|..  .+.+..+.|-|.+|+
T Consensus       289 kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~--~iwsl~~hPlGhil~  366 (464)
T KOG0284|consen  289 KVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDG--EIWSLAYHPLGHILA  366 (464)
T ss_pred             EEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCccccc--ceeeeeccccceeEe
Confidence            9999997776654  35668999999995 4577889999999999998656655443 3433  345667889999999


Q ss_pred             eecCCCeEEEEECcC
Q 023772          245 GGSEDGYIYFWDLVD  259 (277)
Q Consensus       245 sgs~d~~i~iwd~~~  259 (277)
                      +|+.|.++++|....
T Consensus       367 tgsnd~t~rfw~r~r  381 (464)
T KOG0284|consen  367 TGSNDRTVRFWTRNR  381 (464)
T ss_pred             ecCCCcceeeeccCC
Confidence            999999999997543

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.5e-35  Score=246.57  Aligned_cols=252  Identities=20%  Similarity=0.332  Sum_probs=214.0

Q ss_pred             CCccccccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC----eeEEEEeccCccEEEEEEcCCC-CEEEEE
Q 023772            4 SDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG----IHIKTYKSHGREVRDVHVTADN-SKLISC   78 (277)
Q Consensus         4 ~~~~~~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~----~~~~~~~~h~~~v~~~~~~~~~-~~l~t~   78 (277)
                      ...|....+++.||+..|.++....+|.+|+|||.|.++++|.++.+    .++....+|...|.+++++..+ ..|+++
T Consensus       351 y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsv  430 (775)
T KOG0319|consen  351 YTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSV  430 (775)
T ss_pred             EecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEe
Confidence            35566667789999999999997778899999999999999976433    3456778999999999997655 478999


Q ss_pred             eCCCcEEEEECCCCce-----e----EEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcE
Q 023772           79 GGDRQIFYWDVSTGRV-----I----RKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSV  149 (277)
Q Consensus        79 s~d~~v~~wd~~~~~~-----~----~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  149 (277)
                      |.|+++|+|++...+.     +    .+...|...|++++++|+.++++|||.|++.++|++.+  ....-.+.+|...+
T Consensus       431 S~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~--~~l~~vLsGH~RGv  508 (775)
T KOG0319|consen  431 SQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ--LRLLGVLSGHTRGV  508 (775)
T ss_pred             cCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC--ceEEEEeeCCccce
Confidence            9999999999865221     1    23457999999999999999999999999999999973  44556678999999


Q ss_pred             EEEEecCC--eEEEeecCCcEEEEEccCCcccccC--CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEecc
Q 023772          150 MSVCLTKT--EIIGGSVDGTVRTFDIRVGRELSDD--LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGH  225 (277)
Q Consensus       150 ~~~~~~~~--~~~~g~~d~~i~i~d~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~  225 (277)
                      .++.|++.  .+++++.|++|+||.+.+..++.+.  +...|..+.|-.+|++|++++.||.|++|+++++.++.++..|
T Consensus       509 w~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H  588 (775)
T KOG0319|consen  509 WCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAH  588 (775)
T ss_pred             EEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhc
Confidence            99999886  6999999999999999998877664  4457888999999999999999999999999999999999999


Q ss_pred             ccceeeeeeEecCCCceEEeecCCCeEEEEECcC
Q 023772          226 ICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVD  259 (277)
Q Consensus       226 ~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~  259 (277)
                      ..+.+.+.  .++.+.++++|+.||.|.+|.=.+
T Consensus       589 ~DrvWaL~--~~~~~~~~~tgg~Dg~i~~wkD~T  620 (775)
T KOG0319|consen  589 NDRVWALS--VSPLLDMFVTGGGDGRIIFWKDVT  620 (775)
T ss_pred             cceeEEEe--ecCccceeEecCCCeEEEEeecCc
Confidence            87765543  477788999999999999996443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=5.7e-33  Score=252.92  Aligned_cols=243  Identities=21%  Similarity=0.337  Sum_probs=195.7

Q ss_pred             eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC----e----eEEEEeccCccEEEEEEcCC-CCEEEEEeCCCcE
Q 023772           14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG----I----HIKTYKSHGREVRDVHVTAD-NSKLISCGGDRQI   84 (277)
Q Consensus        14 l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~----~----~~~~~~~h~~~v~~~~~~~~-~~~l~t~s~d~~v   84 (277)
                      +.+|.+.|.+++|+++|++++|||.|++|+|||..+.    .    ....+. +...+.+++|++. +.+|++++.|++|
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v  557 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV  557 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence            3459999999999999999999999999999997531    1    122333 3468999999874 6789999999999


Q ss_pred             EEEECCCCceeEEeecccCceeEEEEec-CCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEe---cCCeEE
Q 023772           85 FYWDVSTGRVIRKFRGHESEVNAVKFNE-YSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCL---TKTEII  160 (277)
Q Consensus        85 ~~wd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  160 (277)
                      ++||+.+++.+..+.+|...|++++|+| ++.+|++|+.|++|++||++....  ...+.. ...+..+.+   ++..++
T Consensus       558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~--~~~~~~-~~~v~~v~~~~~~g~~la  634 (793)
T PLN00181        558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS--IGTIKT-KANICCVQFPSESGRSLA  634 (793)
T ss_pred             EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE--EEEEec-CCCeEEEEEeCCCCCEEE
Confidence            9999999999999999999999999996 688999999999999999976432  333332 235566655   356799


Q ss_pred             EeecCCcEEEEEccCCcc-c--ccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCC------CceEEEEeccccceee
Q 023772          161 GGSVDGTVRTFDIRVGRE-L--SDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRST------GELLQEYKGHICKSFK  231 (277)
Q Consensus       161 ~g~~d~~i~i~d~~~~~~-~--~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~------~~~~~~~~~~~~~~~~  231 (277)
                      +|+.|+.|++||++..+. +  ...+...|.++.|. ++.+|++++.|++|++||+..      .+++..+.+|...  .
T Consensus       635 tgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~--i  711 (793)
T PLN00181        635 FGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNV--K  711 (793)
T ss_pred             EEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCC--e
Confidence            999999999999987542 2  22455689999997 678899999999999999974      3567788888543  3


Q ss_pred             eeeEecCCCceEEeecCCCeEEEEECcCccce
Q 023772          232 TDCCLTNSDAHVTGGSEDGYIYFWDLVDASVV  263 (277)
Q Consensus       232 ~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~  263 (277)
                      ...++++++.++++|+.|+.|++|+......+
T Consensus       712 ~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~  743 (793)
T PLN00181        712 NFVGLSVSDGYIATGSETNEVFVYHKAFPMPV  743 (793)
T ss_pred             eEEEEcCCCCEEEEEeCCCEEEEEECCCCCce
Confidence            44568899999999999999999998765443

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=9.5e-34  Score=242.01  Aligned_cols=249  Identities=25%  Similarity=0.477  Sum_probs=211.2

Q ss_pred             cccce-eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 023772            9 TEANV-LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYW   87 (277)
Q Consensus         9 ~~~~~-l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~w   87 (277)
                      +.... +.||.+.|.+++|...+.+|++|+.|.++|+||..+|.+...+.+|...+.++...+  .++++||.|.+|++|
T Consensus       239 ~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW  316 (537)
T KOG0274|consen  239 YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVW  316 (537)
T ss_pred             eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEE
Confidence            33344 789999999999998889999999999999999999999999999999999988864  578889999999999


Q ss_pred             ECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC-CeEEEeecCC
Q 023772           88 DVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK-TEIIGGSVDG  166 (277)
Q Consensus        88 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~d~  166 (277)
                      +++++.++..+.+|..+|+++..+  +.++++|+.|++|++||....  +.+..+.+|...|.++.+.+ ..+++|+.|+
T Consensus       317 ~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~--~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~  392 (537)
T KOG0274|consen  317 DVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTG--KCLKSLSGHTGRVYSLIVDSENRLLSGSLDT  392 (537)
T ss_pred             eccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhc--eeeeeecCCcceEEEEEecCcceEEeeeecc
Confidence            999999999999999999999998  779999999999999999854  45667788999999999998 8899999999


Q ss_pred             cEEEEEccCC-cccccCCC--CCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEecc-ccceeeeeeEecCCCce
Q 023772          167 TVRTFDIRVG-RELSDDLG--QPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGH-ICKSFKTDCCLTNSDAH  242 (277)
Q Consensus       167 ~i~i~d~~~~-~~~~~~~~--~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  242 (277)
                      +|++||+++. +++.....  .-+..  +...+++|++++.|++|++||..++++++.+.+. ....  ..  +......
T Consensus       393 ~IkvWdl~~~~~c~~tl~~h~~~v~~--l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v--~~--l~~~~~~  466 (537)
T KOG0274|consen  393 TIKVWDLRTKRKCIHTLQGHTSLVSS--LLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGV--SA--LALGKEE  466 (537)
T ss_pred             ceEeecCCchhhhhhhhcCCcccccc--cccccceeEeccccccEEEeecccCceeeeeccCCcccE--EE--eecCcce
Confidence            9999999998 66554433  33433  3446788999999999999999999999999883 2222  22  2222467


Q ss_pred             EEeecCCCeEEEEECcCccceeeeccC
Q 023772          243 VTGGSEDGYIYFWDLVDASVVAKFKAH  269 (277)
Q Consensus       243 l~sgs~d~~i~iwd~~~~~~~~~~~~h  269 (277)
                      +++++.||.+++||++++.++..+-.+
T Consensus       467 il~s~~~~~~~l~dl~~~~~~~~l~~~  493 (537)
T KOG0274|consen  467 ILCSSDDGSVKLWDLRSGTLIRTLLST  493 (537)
T ss_pred             EEEEecCCeeEEEecccCchhhhhhhc
Confidence            888899999999999999998876333

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.4e-33  Score=218.86  Aligned_cols=246  Identities=17%  Similarity=0.261  Sum_probs=203.3

Q ss_pred             ccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 023772           10 EANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDV   89 (277)
Q Consensus        10 ~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~   89 (277)
                      .+..+.||++.|+++.|+.+|.+||||+.+|.|+||...++.....+......+.-+.|+|....|+.|+.||.+-+|.+
T Consensus        98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~i  177 (399)
T KOG0296|consen   98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQI  177 (399)
T ss_pred             ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEEC
Confidence            45668899999999999999999999999999999999999888888666678889999999999999999999999999


Q ss_pred             CCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEe-------------------ec-------
Q 023772           90 STGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQI-------------------ID-------  143 (277)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------------------~~-------  143 (277)
                      .++...+.+.+|..++++=.|.|+|++++++..||+|++||+.+.++.....                   +.       
T Consensus       178 p~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~  257 (399)
T KOG0296|consen  178 PSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVA  257 (399)
T ss_pred             CCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccE
Confidence            9887888899999999999999999999999999999999998654321111                   00       


Q ss_pred             ----cccCcEEEEE----------------------ecC--CeEEEeecCCcEEEEEccCCccc-ccCCCCCeeEEEEeC
Q 023772          144 ----SFQDSVMSVC----------------------LTK--TEIIGGSVDGTVRTFDIRVGREL-SDDLGQPVNCISMSN  194 (277)
Q Consensus       144 ----~~~~~~~~~~----------------------~~~--~~~~~g~~d~~i~i~d~~~~~~~-~~~~~~~v~~~~~s~  194 (277)
                          .....+..+.                      ++.  ...++|+.||+|.|||+...+.. ...+..+|..+.|-+
T Consensus       258 ~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~  337 (399)
T KOG0296|consen  258 CGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN  337 (399)
T ss_pred             EEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC
Confidence                0001111111                      011  12578999999999999765422 224567899999998


Q ss_pred             CCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECc
Q 023772          195 DGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLV  258 (277)
Q Consensus       195 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~  258 (277)
                       ..+|++++.||.|+.||.++|++..+|.||..  .+...+++|+.++++++|.|++.+++++.
T Consensus       338 -t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~--~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  338 -TDYLLTACANGKVRQWDARTGQLKFTYTGHQM--GILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             -cchheeeccCceEEeeeccccceEEEEecCch--heeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence             67899999999999999999999999999964  45777889999999999999999999875

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=7.2e-34  Score=215.44  Aligned_cols=241  Identities=27%  Similarity=0.438  Sum_probs=205.5

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCC-EEEEEeCCCcEEEEEC
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNS-KLISCGGDRQIFYWDV   89 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~d~~v~~wd~   89 (277)
                      ...+++|+++|..+.|.+|++.++|||.|.+++.||.++|++++.+++|..-|+++.-..-|. ++.+++.|+++|+||+
T Consensus        83 ~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~  162 (338)
T KOG0265|consen   83 FWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDI  162 (338)
T ss_pred             eeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEee
Confidence            456889999999999999999999999999999999999999999999999999999554444 5678899999999999


Q ss_pred             CCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC--eEEEeecCCc
Q 023772           90 STGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--EIIGGSVDGT  167 (277)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~  167 (277)
                      .+.+.++++. .+-+++++.|..++..+++|+-|+.|++||++...  ...++.+|.+.|+.+..++.  .+.+-+.|.+
T Consensus       163 R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d--~~~~lsGh~DtIt~lsls~~gs~llsnsMd~t  239 (338)
T KOG0265|consen  163 RKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKND--GLYTLSGHADTITGLSLSRYGSFLLSNSMDNT  239 (338)
T ss_pred             cccchhhccc-cceeEEEEEecccccceeeccccCceeeeccccCc--ceEEeecccCceeeEEeccCCCccccccccce
Confidence            9998888775 35688999999999999999999999999998653  46678899999998887754  4888899999


Q ss_pred             EEEEEccCC----ccccc--C--C--CCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEec
Q 023772          168 VRTFDIRVG----RELSD--D--L--GQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLT  237 (277)
Q Consensus       168 i~i~d~~~~----~~~~~--~--~--~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  237 (277)
                      +++||++-.    +++..  .  +  +......+|+|++..+.+|+.|+.+++||......+..+.||...  +..+.|+
T Consensus       240 vrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gs--vn~~~Fh  317 (338)
T KOG0265|consen  240 VRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGS--VNEVDFH  317 (338)
T ss_pred             EEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCccee--EEEeeec
Confidence            999999742    21211  1  1  123445689999999999999999999999988999999999754  4556799


Q ss_pred             CCCceEEeecCCCeEEEEE
Q 023772          238 NSDAHVTGGSEDGYIYFWD  256 (277)
Q Consensus       238 ~~~~~l~sgs~d~~i~iwd  256 (277)
                      |...++.+++.|.+|++=.
T Consensus       318 p~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  318 PTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             CCCcEEEEeccCceeEeec
Confidence            9999999999999998743

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.5e-33  Score=218.81  Aligned_cols=260  Identities=16%  Similarity=0.238  Sum_probs=212.7

Q ss_pred             ccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 023772           10 EANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDV   89 (277)
Q Consensus        10 ~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~   89 (277)
                      ..+.+..|+++|.+++.+|+.++++|||.|....+|++.++.....+.+|...|+++.|+.++.+|+||..+|.|++|..
T Consensus        56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~  135 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV  135 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEe--cCCeEEEeecCCc
Q 023772           90 STGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCL--TKTEIIGGSVDGT  167 (277)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~d~~  167 (277)
                      .++.....+..--..+.-+.|+|....|+.|+.||.+.+|.+.+.  ...+++.++..++..=.+  +++.+++|..||+
T Consensus       136 stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~--~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt  213 (399)
T KOG0296|consen  136 STGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ--ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT  213 (399)
T ss_pred             ccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCc--ceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence            999988888755566666999999999999999999999998764  445667777777765444  4667999999999


Q ss_pred             EEEEEccCCcccccCC-----------------------------------------------------CCCeeEE---E
Q 023772          168 VRTFDIRVGRELSDDL-----------------------------------------------------GQPVNCI---S  191 (277)
Q Consensus       168 i~i~d~~~~~~~~~~~-----------------------------------------------------~~~v~~~---~  191 (277)
                      |++||+.+++.+....                                                     .+.+.|+   .
T Consensus       214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~  293 (399)
T KOG0296|consen  214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIP  293 (399)
T ss_pred             EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcc
Confidence            9999998775431100                                                     0012222   3


Q ss_pred             EeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCcc
Q 023772          192 MSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSL  271 (277)
Q Consensus       192 ~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~  271 (277)
                      ++..-...++|+-||+|-|||+...++...+ .|...  ++.+.+-+ ..+|++++.||.||.||.++|+++.++.||..
T Consensus       294 ~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~--V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~  369 (399)
T KOG0296|consen  294 SSSKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDG--VTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQM  369 (399)
T ss_pred             cccccchhhcccccceEEEEecccchhheec-cCCCc--eEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCch
Confidence            3444456788999999999999877665444 34333  45555555 67899999999999999999999999999998


Q ss_pred             eeEe
Q 023772          272 VVKL  275 (277)
Q Consensus       272 ~v~~  275 (277)
                      .|..
T Consensus       370 ~Il~  373 (399)
T KOG0296|consen  370 GILD  373 (399)
T ss_pred             heeE
Confidence            7753

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=1.3e-33  Score=241.09  Aligned_cols=255  Identities=26%  Similarity=0.441  Sum_probs=220.9

Q ss_pred             cceeec-cCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEE-EeccCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023772           11 ANVLKG-HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKT-YKSHGREVRDVHVTADNSKLISCGGDRQIFYWD   88 (277)
Q Consensus        11 ~~~l~~-H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd   88 (277)
                      ...+.+ |...+.+..|.  +.++++++.|++|++||..++..+.. +.+|.+.|+++++...+.++++|+.|.++++||
T Consensus       200 ~~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd  277 (537)
T KOG0274|consen  200 YKVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWD  277 (537)
T ss_pred             ceeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEe
Confidence            344554 56678888888  56899999999999999999998888 999999999999998889999999999999999


Q ss_pred             CCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCCcE
Q 023772           89 VSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTV  168 (277)
Q Consensus        89 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i  168 (277)
                      ..+|++..++.+|.+.|.++...+  ..+.+|+.|.+|++|++.++.  .+..+..|...|.++..+...+++|+.|++|
T Consensus       278 ~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~--~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v  353 (537)
T KOG0274|consen  278 CSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGA--CLNLLRGHTGPVNCVQLDEPLLVSGSYDGTV  353 (537)
T ss_pred             cCCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcc--eEEEeccccccEEEEEecCCEEEEEecCceE
Confidence            999999999999999998877664  578889999999999998543  4555566899999999999999999999999


Q ss_pred             EEEEccCCcccccC--CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCC-ceEEEEeccccceeeeeeEecCCCceEEe
Q 023772          169 RTFDIRVGRELSDD--LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTG-ELLQEYKGHICKSFKTDCCLTNSDAHVTG  245 (277)
Q Consensus       169 ~i~d~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  245 (277)
                      ++||..+++.+...  +...|.++.+.+. +.+++|+.|++|++||+.+. +++.++.+|...+    ..+...++++.+
T Consensus       354 ~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v----~~l~~~~~~Lvs  428 (537)
T KOG0274|consen  354 KVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLV----SSLLLRDNFLVS  428 (537)
T ss_pred             EEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccc----cccccccceeEe
Confidence            99999988876553  5568999988765 78999999999999999999 9999999986433    233456889999


Q ss_pred             ecCCCeEEEEECcCccceeeecc-CcceeEee
Q 023772          246 GSEDGYIYFWDLVDASVVAKFKA-HSLVVKLL  276 (277)
Q Consensus       246 gs~d~~i~iwd~~~~~~~~~~~~-h~~~v~~~  276 (277)
                      ++.|++|++||..++++++++++ |...|.++
T Consensus       429 ~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l  460 (537)
T KOG0274|consen  429 SSADGTIKLWDAEEGECLRTLEGRHVGGVSAL  460 (537)
T ss_pred             ccccccEEEeecccCceeeeeccCCcccEEEe
Confidence            99999999999999999999999 66777665

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=6.9e-35  Score=216.02  Aligned_cols=262  Identities=25%  Similarity=0.389  Sum_probs=227.4

Q ss_pred             cccceeeccCCcEEEEEEeC---CCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEE
Q 023772            9 TEANVLKGHEGAVLAARFNG---DGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIF   85 (277)
Q Consensus         9 ~~~~~l~~H~~~V~~~~~~~---~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~   85 (277)
                      +.+.+..||..||..++|+|   +|-+|+|++.|+.--+-+-.+|..+.+|++|.+.|++..+..+-.+.++++.|-+.|
T Consensus         5 ~~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftak   84 (334)
T KOG0278|consen    5 QTPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAK   84 (334)
T ss_pred             cCceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhh
Confidence            34556789999999999985   889999999999999999999999999999999999999998888899999999999


Q ss_pred             EEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEe--cCCeEEEee
Q 023772           86 YWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCL--TKTEIIGGS  163 (277)
Q Consensus        86 ~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~  163 (277)
                      +||.-+|..+.+|. |...|.+++|+.|.++|+||+.+.-+++||++.... +...+.++...+..+.+  ..+.+++.+
T Consensus        85 vw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A-pp~E~~ghtg~Ir~v~wc~eD~~iLSSa  162 (334)
T KOG0278|consen   85 VWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA-PPKEISGHTGGIRTVLWCHEDKCILSSA  162 (334)
T ss_pred             hhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCC-CchhhcCCCCcceeEEEeccCceEEeec
Confidence            99999999998887 899999999999999999999999999999986544 33445677777766655  455688889


Q ss_pred             cCCcEEEEEccCCccccc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCce
Q 023772          164 VDGTVRTFDIRVGRELSD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAH  242 (277)
Q Consensus       164 ~d~~i~i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (277)
                      .|+++|+||.+++..+.. ....+|+++.++++|.+|. -...+.|++||..+..+++.+..-   ..+.+.+++|+...
T Consensus       163 dd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilT-ia~gssV~Fwdaksf~~lKs~k~P---~nV~SASL~P~k~~  238 (334)
T KOG0278|consen  163 DDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILT-IAYGSSVKFWDAKSFGLLKSYKMP---CNVESASLHPKKEF  238 (334)
T ss_pred             cCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEE-EecCceeEEeccccccceeeccCc---cccccccccCCCce
Confidence            999999999999987655 4678999999999998654 456678999999999998887643   33456678898889


Q ss_pred             EEeecCCCeEEEEECcCccceeee-ccCcceeEee
Q 023772          243 VTGGSEDGYIYFWDLVDASVVAKF-KAHSLVVKLL  276 (277)
Q Consensus       243 l~sgs~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~  276 (277)
                      ++.|++|+.++-||..+++.+..+ ++|.++|.++
T Consensus       239 fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcV  273 (334)
T KOG0278|consen  239 FVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCV  273 (334)
T ss_pred             EEecCcceEEEEEeccCCceeeecccCCCCceEEE
Confidence            999999999999999999999997 8999999875

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.4e-34  Score=222.86  Aligned_cols=221  Identities=24%  Similarity=0.381  Sum_probs=195.5

Q ss_pred             eeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEe
Q 023772           51 IHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWD  130 (277)
Q Consensus        51 ~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd  130 (277)
                      +..+.+++|.+-|.++++.|.++.|+||+.|+++++||+++|++..++.+|...|..+++++-..++++++.|+.|+.||
T Consensus       142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD  221 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD  221 (460)
T ss_pred             eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence            34567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCcceEeeccccCcEEEEEecCC--eEEEeecCCcEEEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCC
Q 023772          131 CRSHSTEPIQIIDSFQDSVMSVCLTKT--EIIGGSVDGTVRTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDS  206 (277)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~  206 (277)
                      +....  -+..+.+|-..++++...|+  .+++|+.|.++|+||+|+...+..  .+..+|..+.+.|....+++||.|+
T Consensus       222 Le~nk--vIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~  299 (460)
T KOG0285|consen  222 LEYNK--VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDS  299 (460)
T ss_pred             chhhh--hHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCc
Confidence            97643  34456788888988888765  499999999999999998776654  3556899999998888899999999


Q ss_pred             eEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772          207 TLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL  276 (277)
Q Consensus       207 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  276 (277)
                      +|++||++.|+-..++..|...  ....++.|....+|+++.| .|+-|++..|+.++.+.+|.+.|..|
T Consensus       300 tvrlWDl~agkt~~tlt~hkks--vral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl  366 (460)
T KOG0285|consen  300 TVRLWDLRAGKTMITLTHHKKS--VRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTL  366 (460)
T ss_pred             eEEEeeeccCceeEeeecccce--eeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeee
Confidence            9999999999988888888643  4556789999999999988 59999999999999999999888765

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.6e-34  Score=238.53  Aligned_cols=259  Identities=20%  Similarity=0.317  Sum_probs=214.6

Q ss_pred             eeeccCCcEEEEEE-eCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 023772           13 VLKGHEGAVLAARF-NGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVST   91 (277)
Q Consensus        13 ~l~~H~~~V~~~~~-~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~   91 (277)
                      .+-|..+.|..++| .|+.++|+.+++-+.+|+|+..+-.+. .+.+|...|.+++...+|.+|+|||.|+++++|.+++
T Consensus       318 ~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~  396 (775)
T KOG0319|consen  318 QIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNN  396 (775)
T ss_pred             hhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecC
Confidence            34578888999887 567899999999999999988776555 8899999999999777788999999999999998854


Q ss_pred             C----ceeEEeecccCceeEEEEecC-CCEEEEEeCCCcEEEEeCccCCC--cceE-----eeccccCcEEEEEecCC--
Q 023772           92 G----RVIRKFRGHESEVNAVKFNEY-SSVVVSAGYDQSLRAWDCRSHST--EPIQ-----IIDSFQDSVMSVCLTKT--  157 (277)
Q Consensus        92 ~----~~~~~~~~h~~~v~~i~~~~~-~~~l~s~~~d~~i~iwd~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~--  157 (277)
                      +    .++....+|++.|.+++++.. ...|+++|.|+++++|++.....  .+..     ....|...+.++...++  
T Consensus       397 ~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndk  476 (775)
T KOG0319|consen  397 NCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDK  476 (775)
T ss_pred             CcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCc
Confidence            3    345667899999999999654 35899999999999999875211  1111     12345556666666554  


Q ss_pred             eEEEeecCCcEEEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeE
Q 023772          158 EIIGGSVDGTVRTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCC  235 (277)
Q Consensus       158 ~~~~g~~d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  235 (277)
                      .+++|++|++.++|+++..+....  .+...+.|+.|+|..+.++++|.|++|+||.+++..++++|.||.+.  ...+.
T Consensus       477 LiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~a--Vlra~  554 (775)
T KOG0319|consen  477 LIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSA--VLRAS  554 (775)
T ss_pred             eEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccce--eEeee
Confidence            599999999999999996654433  34557999999999999999999999999999999999999999654  56677


Q ss_pred             ecCCCceEEeecCCCeEEEEECcCccceeeeccCcceeE
Q 023772          236 LTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVK  274 (277)
Q Consensus       236 ~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~  274 (277)
                      |-.++..+++++.||-|++|++++++++.++.+|..-|=
T Consensus       555 F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvW  593 (775)
T KOG0319|consen  555 FIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVW  593 (775)
T ss_pred             eeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeE
Confidence            888999999999999999999999999999999987654

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.5e-34  Score=213.37  Aligned_cols=238  Identities=23%  Similarity=0.375  Sum_probs=196.4

Q ss_pred             cCCcEEEEEEeCCC-CEEEEEeCCCcEEEEcCC-CCeeEEEEeccCccEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCc
Q 023772           17 HEGAVLAARFNGDG-NYCLSCGKDRTIRLWNPH-RGIHIKTYKSHGREVRDVHVTAD-NSKLISCGGDRQIFYWDVSTGR   93 (277)
Q Consensus        17 H~~~V~~~~~~~~~-~~l~s~s~d~~v~iwd~~-~~~~~~~~~~h~~~v~~~~~~~~-~~~l~t~s~d~~v~~wd~~~~~   93 (277)
                      -++.+..++|+++. +.+++|+.||++|+||.. ...++..+++|...|.++.|++. ...++++|.|++||+|+....+
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~  138 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN  138 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence            35678899999864 678899999999999954 34678899999999999999985 4567888999999999999999


Q ss_pred             eeEEeecccCceeEEEEecC-CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC---CeEEEeecCCcEE
Q 023772           94 VIRKFRGHESEVNAVKFNEY-SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK---TEIIGGSVDGTVR  169 (277)
Q Consensus        94 ~~~~~~~h~~~v~~i~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~d~~i~  169 (277)
                      -+++|.+|..-|....|+|. .++++++|.|+++++||++... + .+.+..|...+.++.+++   +.+++|+.|+.|+
T Consensus       139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g-k-~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr  216 (311)
T KOG0277|consen  139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG-K-FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVR  216 (311)
T ss_pred             ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC-c-eeEEEeccceeEeecccccCCcEEEecCCCceEE
Confidence            99999999999999999986 6799999999999999998763 2 334667777888888764   5599999999999


Q ss_pred             EEEccCCccc-cc--CCCCCeeEEEEeCCC-CEEEEEecCCeEEEEECC-CCceEEEEeccccceeeeeeEecCCCceEE
Q 023772          170 TFDIRVGREL-SD--DLGQPVNCISMSNDG-NCILASCLDSTLRLLDRS-TGELLQEYKGHICKSFKTDCCLTNSDAHVT  244 (277)
Q Consensus       170 i~d~~~~~~~-~~--~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  244 (277)
                      .||++.-+.. ..  .++-.|+.+.|||.. ..|++++.|-++||||.. ...++.++..|...+...++... +..++|
T Consensus       217 ~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~-~~~~vA  295 (311)
T KOG0277|consen  217 GWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLF-DPGQVA  295 (311)
T ss_pred             EEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccc-cCceee
Confidence            9999976532 22  345589999999964 578899999999999987 44566677777655555555444 677899


Q ss_pred             eecCCCeEEEEEC
Q 023772          245 GGSEDGYIYFWDL  257 (277)
Q Consensus       245 sgs~d~~i~iwd~  257 (277)
                      +.+.|+.++||+.
T Consensus       296 s~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  296 STGWDELLYVWNP  308 (311)
T ss_pred             ecccccceeeecc
Confidence            9999999999984

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.3e-32  Score=204.61  Aligned_cols=240  Identities=21%  Similarity=0.359  Sum_probs=192.8

Q ss_pred             cceeeccCCcEEEEEEeCC-CCEEEEEeCCCcEEEEcCCC---CeeEEEE-eccCccEEEEEEcCCCCEEEEEeCCCcEE
Q 023772           11 ANVLKGHEGAVLAARFNGD-GNYCLSCGKDRTIRLWNPHR---GIHIKTY-KSHGREVRDVHVTADNSKLISCGGDRQIF   85 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~-~~~l~s~s~d~~v~iwd~~~---~~~~~~~-~~h~~~v~~~~~~~~~~~l~t~s~d~~v~   85 (277)
                      ...+.+|.+.|..++|+|- |..|+|||.|+.||||+...   -.+...+ .+|...|++++|+|.+++|++||.|.++-
T Consensus         7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~   86 (312)
T KOG0645|consen    7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV   86 (312)
T ss_pred             EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence            4567899999999999998 88999999999999999874   2333333 46999999999999999999999999999


Q ss_pred             EEECCCC--ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccC-CCcceEeeccccCcEEEEEecC--CeEE
Q 023772           86 YWDVSTG--RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSH-STEPIQIIDSFQDSVMSVCLTK--TEII  160 (277)
Q Consensus        86 ~wd~~~~--~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~  160 (277)
                      +|.-+.+  +++.++.+|.++|.+++|+++|++||||+.|+.|-+|.+... ..+....+..|..-+..+.+.|  ..|+
T Consensus        87 Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~  166 (312)
T KOG0645|consen   87 IWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLF  166 (312)
T ss_pred             EeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeE
Confidence            9987654  688999999999999999999999999999999999998632 2344556777877788888888  4599


Q ss_pred             EeecCCcEEEEEccCCc---c--cccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEec-cccceeeeee
Q 023772          161 GGSVDGTVRTFDIRVGR---E--LSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKG-HICKSFKTDC  234 (277)
Q Consensus       161 ~g~~d~~i~i~d~~~~~---~--~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~  234 (277)
                      ++++|.+|++|.-..+.   .  ....+...|.+++|+|.|..|++++.|++++||-..+.     +.+ |....+... 
T Consensus       167 S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~~~~sr~~Y~v~-  240 (312)
T KOG0645|consen  167 SCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LSGMHSRALYDVP-  240 (312)
T ss_pred             EeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-----cchhcccceEeee-
Confidence            99999999999866322   1  12233447999999999999999999999999997632     111 111222222 


Q ss_pred             EecCCCceEEeecCCCeEEEEECcC
Q 023772          235 CLTNSDAHVTGGSEDGYIYFWDLVD  259 (277)
Q Consensus       235 ~~~~~~~~l~sgs~d~~i~iwd~~~  259 (277)
                       +.  +..+++|+.|+.|+++....
T Consensus       241 -W~--~~~IaS~ggD~~i~lf~~s~  262 (312)
T KOG0645|consen  241 -WD--NGVIASGGGDDAIRLFKESD  262 (312)
T ss_pred             -ec--ccceEeccCCCEEEEEEecC
Confidence             22  55799999999999998665

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4e-33  Score=237.68  Aligned_cols=246  Identities=20%  Similarity=0.317  Sum_probs=208.2

Q ss_pred             eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 023772           14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGR   93 (277)
Q Consensus        14 l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~   93 (277)
                      +..|.|||+.+.|+|+..+++|||.|..|+||+..+.+++.++.+|-..|+.+.|++.-..|+++|.|.+|++|+..+.+
T Consensus        47 FdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~  126 (1202)
T KOG0292|consen   47 FDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK  126 (1202)
T ss_pred             hhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCC---------------------------cceEeecccc
Q 023772           94 VIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHST---------------------------EPIQIIDSFQ  146 (277)
Q Consensus        94 ~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~---------------------------~~~~~~~~~~  146 (277)
                      ++..+.+|...|.+..|+|...+++++|.|.+|++||+..-..                           .-..++++|.
T Consensus       127 ~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHD  206 (1202)
T KOG0292|consen  127 CIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHD  206 (1202)
T ss_pred             eEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccc
Confidence            9999999999999999999999999999999999999853110                           0123456788


Q ss_pred             CcEEEEEecCCe--EEEeecCCcEEEEEccCCcccc----cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEE
Q 023772          147 DSVMSVCLTKTE--IIGGSVDGTVRTFDIRVGRELS----DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQ  220 (277)
Q Consensus       147 ~~~~~~~~~~~~--~~~g~~d~~i~i~d~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~  220 (277)
                      ..+..+++.|+.  +++|+.|+.+++|.+...+.+.    ..+...|.++-|+|..+.+++.++|++||+||+...+.++
T Consensus       207 RGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~  286 (1202)
T KOG0292|consen  207 RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQ  286 (1202)
T ss_pred             cccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccccccee
Confidence            888999998854  8899999999999987665443    2455689999999999999999999999999999999999


Q ss_pred             EEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccc
Q 023772          221 EYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASV  262 (277)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~  262 (277)
                      +|+..... +.. .+..|..+++++|. |+-+.++.++..+.
T Consensus       287 tfrrendR-FW~-laahP~lNLfAAgH-DsGm~VFkleRErp  325 (1202)
T KOG0292|consen  287 TFRRENDR-FWI-LAAHPELNLFAAGH-DSGMIVFKLERERP  325 (1202)
T ss_pred             eeeccCCe-EEE-EEecCCcceeeeec-CCceEEEEEcccCc
Confidence            99755433 332 34567777777664 44455666664433

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=8.9e-32  Score=216.28  Aligned_cols=242  Identities=32%  Similarity=0.537  Sum_probs=208.4

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~   90 (277)
                      ...+.+|..++..+.|.++++++++++.|+.+++||..+++....+..|...+.++.|.++++++++++.|+.+++||+.
T Consensus        44 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~  123 (289)
T cd00200          44 LRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE  123 (289)
T ss_pred             EEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECC
Confidence            34567899999999999999999999999999999999888888899999999999999998888888889999999999


Q ss_pred             CCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC--eEEEeecCCcE
Q 023772           91 TGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--EIIGGSVDGTV  168 (277)
Q Consensus        91 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i  168 (277)
                      +++....+..|...+.++.++|++.++++++.|+.+++||++...  ....+..+...+..+.+.++  .+++++.|+.+
T Consensus       124 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i  201 (289)
T cd00200         124 TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK--CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTI  201 (289)
T ss_pred             CcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc--cceeEecCccccceEEECCCcCEEEEecCCCcE
Confidence            899888899999999999999998899888889999999997543  33444556667777777766  68888889999


Q ss_pred             EEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEee
Q 023772          169 RTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGG  246 (277)
Q Consensus       169 ~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg  246 (277)
                      ++||++.++....  .+..++.++.|+|++.++++++.|+.+++||+.+++....+..|..  .....++++++.+++++
T Consensus       202 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~  279 (289)
T cd00200         202 KLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTN--SVTSLAWSPDGKRLASG  279 (289)
T ss_pred             EEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCC--cEEEEEECCCCCEEEEe
Confidence            9999987665443  3455899999999988888888899999999999888888886643  35566788999999999


Q ss_pred             cCCCeEEEEE
Q 023772          247 SEDGYIYFWD  256 (277)
Q Consensus       247 s~d~~i~iwd  256 (277)
                      +.|+.|++|+
T Consensus       280 ~~d~~i~iw~  289 (289)
T cd00200         280 SADGTIRIWD  289 (289)
T ss_pred             cCCCeEEecC
Confidence            9999999996

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.4e-32  Score=209.70  Aligned_cols=243  Identities=18%  Similarity=0.325  Sum_probs=199.6

Q ss_pred             eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCC--EEEEEeCCCcEEEEECC
Q 023772           13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNS--KLISCGGDRQIFYWDVS   90 (277)
Q Consensus        13 ~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~d~~v~~wd~~   90 (277)
                      .+.+|.+++++++.+  +.+++|||.|-+|+|||+.+...+..+-.|.+.|+++.|.++-.  .|++|+.||.|.+|++.
T Consensus        38 ~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~  115 (362)
T KOG0294|consen   38 AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG  115 (362)
T ss_pred             cccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC
Confidence            357899999999876  78999999999999999999999999999999999999998764  89999999999999999


Q ss_pred             CCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCCcEEE
Q 023772           91 TGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRT  170 (277)
Q Consensus        91 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i  170 (277)
                      ..+++.++++|...|+.++++|.+++.++.+.|+.+++||+-.+....+..+.... ....+...+.+++.++.+ .|-+
T Consensus       116 ~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~a-t~v~w~~~Gd~F~v~~~~-~i~i  193 (362)
T KOG0294|consen  116 SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKA-TLVSWSPQGDHFVVSGRN-KIDI  193 (362)
T ss_pred             CeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcc-eeeEEcCCCCEEEEEecc-EEEE
Confidence            99999999999999999999999999999999999999999776544333333222 223333445557666554 5888


Q ss_pred             EEccCCcccccCC-CCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCC
Q 023772          171 FDIRVGRELSDDL-GQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSED  249 (277)
Q Consensus       171 ~d~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d  249 (277)
                      |.+.....+.... +..+.|+.|. ++..|++|..|+.|++||.....+...+.+|.+++-.......|++.+|+++|+|
T Consensus       194 ~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSD  272 (362)
T KOG0294|consen  194 YQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSD  272 (362)
T ss_pred             EecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccC
Confidence            9887765444322 2457777776 4567999999999999999999999999999876544444445778899999999


Q ss_pred             CeEEEEECcCc
Q 023772          250 GYIYFWDLVDA  260 (277)
Q Consensus       250 ~~i~iwd~~~~  260 (277)
                      |.|++||++..
T Consensus       273 G~I~vWd~~~~  283 (362)
T KOG0294|consen  273 GFIKVWDIDME  283 (362)
T ss_pred             ceEEEEEcccc
Confidence            99999999876

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.8e-34  Score=241.99  Aligned_cols=248  Identities=24%  Similarity=0.380  Sum_probs=214.1

Q ss_pred             ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 023772           16 GHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVI   95 (277)
Q Consensus        16 ~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~   95 (277)
                      ..+..|..++|+|...+++++-..|.|++||.+.+.++..|.+|.++|+.++|+|....+++||.|.+|++|+..+.+++
T Consensus         7 skSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrcl   86 (1202)
T KOG0292|consen    7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCL   86 (1202)
T ss_pred             cccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceeh
Confidence            45567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC--eEEEeecCCcEEEEEc
Q 023772           96 RKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--EIIGGSVDGTVRTFDI  173 (277)
Q Consensus        96 ~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~i~d~  173 (277)
                      .++.+|-..|..+.|++.-..++++|.|.+|+||+..+..  .+..+.+|...+++..+.|+  .+++++.|.+||+||+
T Consensus        87 ftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~--~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDi  164 (1202)
T KOG0292|consen   87 FTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK--CIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDI  164 (1202)
T ss_pred             hhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc--eEEEEecCceEEEeeccCCccceEEEecccceEEEEee
Confidence            9999999999999999999999999999999999987654  46667778888887777764  4899999999999998


Q ss_pred             cCCcc--------------------c-----------ccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCc--eEE
Q 023772          174 RVGRE--------------------L-----------SDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGE--LLQ  220 (277)
Q Consensus       174 ~~~~~--------------------~-----------~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~--~~~  220 (277)
                      ..-+.                    +           ...+..-|+-++|+|.-..|++|+.|+.+++|.+..-+  .+.
T Consensus       165 sGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvD  244 (1202)
T KOG0292|consen  165 SGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVD  244 (1202)
T ss_pred             cchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeeh
Confidence            42110                    0           01122347889999999999999999999999996543  355


Q ss_pred             EEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeec
Q 023772          221 EYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFK  267 (277)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~  267 (277)
                      +..||.+.+  ..+.|.|...++.+.|+|+.||+||+.....+++|+
T Consensus       245 tcrgH~nnV--ssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr  289 (1202)
T KOG0292|consen  245 TCRGHYNNV--SSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR  289 (1202)
T ss_pred             hhhcccCCc--ceEEecCccceeEecCCCccEEEEecccccceeeee
Confidence            678887654  445678888899999999999999999998888885

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=9.6e-32  Score=244.91  Aligned_cols=239  Identities=15%  Similarity=0.273  Sum_probs=197.1

Q ss_pred             cCCcEEEEEEeC-CCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCce
Q 023772           17 HEGAVLAARFNG-DGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTA-DNSKLISCGGDRQIFYWDVSTGRV   94 (277)
Q Consensus        17 H~~~V~~~~~~~-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~d~~v~~wd~~~~~~   94 (277)
                      +..+|.+++|++ ++.+|++++.|++|++||+.+++.+..+.+|.+.|++++|+| ++.+|+||+.|++|++||+.++..
T Consensus       531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~  610 (793)
T PLN00181        531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS  610 (793)
T ss_pred             ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE
Confidence            456799999987 478999999999999999999999999999999999999996 678999999999999999999998


Q ss_pred             eEEeecccCceeEEEEe-cCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec-CCeEEEeecCCcEEEEE
Q 023772           95 IRKFRGHESEVNAVKFN-EYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT-KTEIIGGSVDGTVRTFD  172 (277)
Q Consensus        95 ~~~~~~h~~~v~~i~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~d~~i~i~d  172 (277)
                      +.++..+ ..+.++.|. +++.++++|+.||.|++||++... .+...+..|...+..+.+. +..+++++.|++|++||
T Consensus       611 ~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~-~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd  688 (793)
T PLN00181        611 IGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK-LPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWD  688 (793)
T ss_pred             EEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC-ccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEe
Confidence            8888754 678899995 568999999999999999997643 2344556677788887774 46689999999999999


Q ss_pred             ccCCc------ccc--cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEec-----------cccceeeee
Q 023772          173 IRVGR------ELS--DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKG-----------HICKSFKTD  233 (277)
Q Consensus       173 ~~~~~------~~~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-----------~~~~~~~~~  233 (277)
                      ++...      .+.  ..+...+++++|+|++.+|++|+.|+.+++|+......+..+..           ......+..
T Consensus       689 ~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~  768 (793)
T PLN00181        689 LSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISS  768 (793)
T ss_pred             CCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEE
Confidence            97532      121  23455788999999999999999999999999876655433321           111234667


Q ss_pred             eEecCCCceEEeecCCCeEEEEEC
Q 023772          234 CCLTNSDAHVTGGSEDGYIYFWDL  257 (277)
Q Consensus       234 ~~~~~~~~~l~sgs~d~~i~iwd~  257 (277)
                      +++++++..+++|+.||.|++|++
T Consensus       769 v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        769 VCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EEEcCCCCeEEEecCCCcEEEEec
Confidence            789999999999999999999996

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=5.2e-32  Score=202.70  Aligned_cols=238  Identities=22%  Similarity=0.436  Sum_probs=195.8

Q ss_pred             eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCC--CeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 023772           15 KGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHR--GIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTG   92 (277)
Q Consensus        15 ~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~   92 (277)
                      .+|+..|++++|+|.|++|++||.|.++.||.-..  .+++.++++|...|.+++|+++|.+|+|++.|++|-+|.+..+
T Consensus        58 ~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded  137 (312)
T KOG0645|consen   58 DGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED  137 (312)
T ss_pred             ccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC
Confidence            37999999999999999999999999999997543  3678999999999999999999999999999999999998744


Q ss_pred             ---ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCc-cCCCcceEeeccccCcEEEEEecC--CeEEEeecCC
Q 023772           93 ---RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR-SHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDG  166 (277)
Q Consensus        93 ---~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~d~  166 (277)
                         +++..++.|+..|..+.|+|...+|+++|+|.+|++|.-. ...-+..+.+..+...+.++.|++  ..+++++.|+
T Consensus       138 dEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~  217 (312)
T KOG0645|consen  138 DEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDG  217 (312)
T ss_pred             CcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCc
Confidence               5778899999999999999999999999999999999866 334456778888888898888876  4599999999


Q ss_pred             cEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCC------ceEE-EEeccccceeeeeeEecCC
Q 023772          167 TVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTG------ELLQ-EYKGHICKSFKTDCCLTNS  239 (277)
Q Consensus       167 ~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~------~~~~-~~~~~~~~~~~~~~~~~~~  239 (277)
                      +++||-...  .+...+..++..+.|. +| .|++++.|+.|++|.....      +++. .-..|..  -+....+.|.
T Consensus       218 tv~Iw~~~~--~~~~~~sr~~Y~v~W~-~~-~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~--dVNsV~w~p~  291 (312)
T KOG0645|consen  218 TVSIWRLYT--DLSGMHSRALYDVPWD-NG-VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEV--DVNSVQWNPK  291 (312)
T ss_pred             ceEeeeecc--CcchhcccceEeeeec-cc-ceEeccCCCEEEEEEecCCCCCchHHHHHhhhccccc--ccceEEEcCC
Confidence            999998763  2334456788889998 44 6899999999999987642      1111 1112332  3344556773


Q ss_pred             -CceEEeecCCCeEEEEECc
Q 023772          240 -DAHVTGGSEDGYIYFWDLV  258 (277)
Q Consensus       240 -~~~l~sgs~d~~i~iwd~~  258 (277)
                       .++|++|+.||.|++|.+.
T Consensus       292 ~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  292 VSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CCCceeecCCCceEEEEEec
Confidence             6789999999999999874

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=2.3e-34  Score=213.26  Aligned_cols=247  Identities=22%  Similarity=0.401  Sum_probs=210.3

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~   90 (277)
                      ..++.||+++|.+...+.+....+|++.|.+.++||.-+|..+..|+ |...|.+++|+.+.++|+||+.++.+++||++
T Consensus        52 igtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln  130 (334)
T KOG0278|consen   52 IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLN  130 (334)
T ss_pred             EEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhcc
Confidence            35678999999999999999999999999999999999999998886 88999999999999999999999999999998


Q ss_pred             CCc-eeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCe-EEEeecCCcE
Q 023772           91 TGR-VIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE-IIGGSVDGTV  168 (277)
Q Consensus        91 ~~~-~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~d~~i  168 (277)
                      ..+ +...+.+|+..|..+.|....+.|++++.|++|++||.++...  ++.+. ...++.++..++.. +++....+.|
T Consensus       131 ~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~--v~sL~-~~s~VtSlEvs~dG~ilTia~gssV  207 (334)
T KOG0278|consen  131 RPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTE--VQSLE-FNSPVTSLEVSQDGRILTIAYGSSV  207 (334)
T ss_pred             CCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcE--EEEEe-cCCCCcceeeccCCCEEEEecCcee
Confidence            653 5678999999999999999899999999999999999998643  33222 34456666666543 7777888899


Q ss_pred             EEEEccCCccccc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEE-eccccceeeeeeEecCCCceEEee
Q 023772          169 RTFDIRVGRELSD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEY-KGHICKSFKTDCCLTNSDAHVTGG  246 (277)
Q Consensus       169 ~i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~sg  246 (277)
                      .+||..+...+.. .....|.+.+++|+...+++|++|..++-||..+++.+..| .+|...  +-...|+|+|..-++|
T Consensus       208 ~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gp--VhcVrFSPdGE~yAsG  285 (334)
T KOG0278|consen  208 KFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGP--VHCVRFSPDGELYASG  285 (334)
T ss_pred             EEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCc--eEEEEECCCCceeecc
Confidence            9999987665543 44567899999999999999999999999999999999887 777544  3445789999999999


Q ss_pred             cCCCeEEEEECcCccce
Q 023772          247 SEDGYIYFWDLVDASVV  263 (277)
Q Consensus       247 s~d~~i~iwd~~~~~~~  263 (277)
                      |+||+||+|....++..
T Consensus       286 SEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  286 SEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             CCCceEEEEEecCCCch
Confidence            99999999998776543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-32  Score=227.09  Aligned_cols=235  Identities=22%  Similarity=0.327  Sum_probs=199.6

Q ss_pred             eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-c
Q 023772           15 KGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTG-R   93 (277)
Q Consensus        15 ~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~-~   93 (277)
                      .-.+-||++..|-+-.+++++|+.|..||||+.+|++.+++|++|+..|++++++|...+++|+|.|-+||+||-+.+ .
T Consensus        52 eV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa  131 (794)
T KOG0276|consen   52 EVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWA  131 (794)
T ss_pred             eecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCcee
Confidence            345678889999999999999999999999999999999999999999999999999999999999999999999864 6


Q ss_pred             eeEEeecccCceeEEEEecC-CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec----CCeEEEeecCCcE
Q 023772           94 VIRKFRGHESEVNAVKFNEY-SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT----KTEIIGGSVDGTV  168 (277)
Q Consensus        94 ~~~~~~~h~~~v~~i~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~g~~d~~i  168 (277)
                      +.++|.+|+.-|.+++|+|. .+.+++++.|++|++|.+.++  .+..+++.|...+.++..-    +.++++|+.|.++
T Consensus       132 ~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~--~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~ti  209 (794)
T KOG0276|consen  132 CEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP--HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTI  209 (794)
T ss_pred             eeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC--CCceeeeccccCcceEEeccCCCcceEEecCCCceE
Confidence            88899999999999999986 568999999999999998754  5667788999999888864    2469999999999


Q ss_pred             EEEEccCCcccccC--CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEee
Q 023772          169 RTFDIRVGRELSDD--LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGG  246 (277)
Q Consensus       169 ~i~d~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg  246 (277)
                      ++||..+..++.+.  +.+.|+.+.|+|.-..+++|++||++|||+..+.++..++.-...+.  ......+.++.++.|
T Consensus       210 KvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRv--W~I~~~k~~~~i~vG  287 (794)
T KOG0276|consen  210 KVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERV--WCIAAHKGDGKIAVG  287 (794)
T ss_pred             EEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceE--EEEeecCCCCeEEEe
Confidence            99999988877654  55689999999999999999999999999999887776654332222  222223666678888


Q ss_pred             cCCCeEE
Q 023772          247 SEDGYIY  253 (277)
Q Consensus       247 s~d~~i~  253 (277)
                      ...|.|.
T Consensus       288 ~Deg~i~  294 (794)
T KOG0276|consen  288 FDEGSVT  294 (794)
T ss_pred             ccCCcEE
Confidence            7777663

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=2e-31  Score=227.26  Aligned_cols=249  Identities=18%  Similarity=0.211  Sum_probs=192.5

Q ss_pred             cCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeE-------------EEEeccCccEEEEEEcC-CCCEEEEEeCCC
Q 023772           17 HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHI-------------KTYKSHGREVRDVHVTA-DNSKLISCGGDR   82 (277)
Q Consensus        17 H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~-------------~~~~~h~~~v~~~~~~~-~~~~l~t~s~d~   82 (277)
                      |-..|+...+++++..+++++.+..+..|+...+..+             ..+.+|.++|++++|+| ++++|++|+.|+
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg   98 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG   98 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence            4566777777888888889999998889985433222             24678999999999999 788999999999


Q ss_pred             cEEEEECCCC-------ceeEEeecccCceeEEEEecCC-CEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEe
Q 023772           83 QIFYWDVSTG-------RVIRKFRGHESEVNAVKFNEYS-SVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCL  154 (277)
Q Consensus        83 ~v~~wd~~~~-------~~~~~~~~h~~~v~~i~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  154 (277)
                      +|++||+.++       +++..+.+|...|.+++|+|++ ++|++++.|++|++||+....  ....+..|...+.++.+
T Consensus        99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~--~~~~l~~h~~~V~sla~  176 (493)
T PTZ00421         99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK--AVEVIKCHSDQITSLEW  176 (493)
T ss_pred             EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe--EEEEEcCCCCceEEEEE
Confidence            9999999764       3567889999999999999985 699999999999999997643  34556667788888887


Q ss_pred             cC--CeEEEeecCCcEEEEEccCCcccccC--CC-CCeeEEEEeCCCCEEEEEe----cCCeEEEEECCCCc-eEEEEec
Q 023772          155 TK--TEIIGGSVDGTVRTFDIRVGRELSDD--LG-QPVNCISMSNDGNCILASC----LDSTLRLLDRSTGE-LLQEYKG  224 (277)
Q Consensus       155 ~~--~~~~~g~~d~~i~i~d~~~~~~~~~~--~~-~~v~~~~~s~~~~~l~~~~----~d~~i~~wd~~~~~-~~~~~~~  224 (277)
                      ++  ..+++++.|++|++||+++++.+...  +. .....+.|.+++..+++++    .|+.|++||+++.. .+.....
T Consensus       177 spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~  256 (493)
T PTZ00421        177 NLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDL  256 (493)
T ss_pred             ECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEecc
Confidence            65  45899999999999999988755432  22 2345678888888777754    47899999998653 3333332


Q ss_pred             cccceeeeeeEecCCCceEEeec-CCCeEEEEECcCccceeeecc
Q 023772          225 HICKSFKTDCCLTNSDAHVTGGS-EDGYIYFWDLVDASVVAKFKA  268 (277)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~l~sgs-~d~~i~iwd~~~~~~~~~~~~  268 (277)
                      +. ........+++++.++++|+ .|+.|++||+.+++++..++.
T Consensus       257 d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~  300 (493)
T PTZ00421        257 DQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSY  300 (493)
T ss_pred             CC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeec
Confidence            22 12233456788898888876 599999999999988776653

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=9.9e-33  Score=210.49  Aligned_cols=271  Identities=23%  Similarity=0.327  Sum_probs=215.9

Q ss_pred             ccccccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCC------------CC------eeEEEEeccCccEEEEE
Q 023772            6 LPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPH------------RG------IHIKTYKSHGREVRDVH   67 (277)
Q Consensus         6 ~~~~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~------------~~------~~~~~~~~h~~~v~~~~   67 (277)
                      .++.|...+..|++++++.+|++||.+++|||.|..|+|.|++            .+      ..++++-.|..+|+++.
T Consensus       100 ~~~yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~  179 (430)
T KOG0640|consen  100 PSEYETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLD  179 (430)
T ss_pred             CcccceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCccccee
Confidence            3556677789999999999999999999999999999999965            11      35788889999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCceeEEe--ecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcce-Eeecc
Q 023772           68 VTADNSKLISCGGDRQIFYWDVSTGRVIRKF--RGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPI-QIIDS  144 (277)
Q Consensus        68 ~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~--~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~  144 (277)
                      |+|....|++|+.|++||+||...-...+.+  ..-..+|.++.|+|.|++++.|....++++||+.+.+.-.. .--..
T Consensus       180 FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~q  259 (430)
T KOG0640|consen  180 FHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQ  259 (430)
T ss_pred             ecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccc
Confidence            9999999999999999999998643222211  22456899999999999999999999999999986432110 11134


Q ss_pred             ccCcEEEEEecC--CeEEEeecCCcEEEEEccCCccccc---CC-CCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCce
Q 023772          145 FQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVGRELSD---DL-GQPVNCISMSNDGNCILASCLDSTLRLLDRSTGEL  218 (277)
Q Consensus       145 ~~~~~~~~~~~~--~~~~~g~~d~~i~i~d~~~~~~~~~---~~-~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~  218 (277)
                      |.+.+..+..++  ...++|+.||.|++||--+++++..   .+ +..|.+..|..+|+|+++++.|..+++|.+.++..
T Consensus       260 ht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~  339 (430)
T KOG0640|consen  260 HTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM  339 (430)
T ss_pred             cccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence            566777777665  4588999999999999888877654   23 45899999999999999999999999999999999


Q ss_pred             EEEEecc---ccceeeeeeEecCCCceEEee-cCCCeEEEEECcCccceeeec-cCcceeEee
Q 023772          219 LQEYKGH---ICKSFKTDCCLTNSDAHVTGG-SEDGYIYFWDLVDASVVAKFK-AHSLVVKLL  276 (277)
Q Consensus       219 ~~~~~~~---~~~~~~~~~~~~~~~~~l~sg-s~d~~i~iwd~~~~~~~~~~~-~h~~~v~~~  276 (277)
                      +.+|.|.   ..........|...+.|+..- -..+.+.-||.+++..+..+. +|.++++.+
T Consensus       340 l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i  402 (430)
T KOG0640|consen  340 LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWI  402 (430)
T ss_pred             EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEE
Confidence            9999875   122233445566556665542 345678999999999888887 899998865

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=2.8e-31  Score=226.40  Aligned_cols=210  Identities=19%  Similarity=0.274  Sum_probs=168.8

Q ss_pred             ceeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEcCCCC-------eeEEEEeccCccEEEEEEcCCC-CEEEEEeCCC
Q 023772           12 NVLKGHEGAVLAARFNG-DGNYCLSCGKDRTIRLWNPHRG-------IHIKTYKSHGREVRDVHVTADN-SKLISCGGDR   82 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~-~~~~l~s~s~d~~v~iwd~~~~-------~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~d~   82 (277)
                      ..+.||.++|++++|+| ++++|+|||.|++|++||+.++       ..+..+.+|...|.+++|+|++ ++|++++.|+
T Consensus        69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg  148 (493)
T PTZ00421         69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM  148 (493)
T ss_pred             ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence            35789999999999999 8899999999999999998764       3567889999999999999975 6899999999


Q ss_pred             cEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCc-EEEEEec--CCeE
Q 023772           83 QIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDS-VMSVCLT--KTEI  159 (277)
Q Consensus        83 ~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~  159 (277)
                      +|++||+++++.+..+..|...|.+++|++++.+|++++.|++|++||+++..  .+..+..|... ...+.+.  ...+
T Consensus       149 tVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~--~v~tl~~H~~~~~~~~~w~~~~~~i  226 (493)
T PTZ00421        149 VVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT--IVSSVEAHASAKSQRCLWAKRKDLI  226 (493)
T ss_pred             EEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc--EEEEEecCCCCcceEEEEcCCCCeE
Confidence            99999999999999999999999999999999999999999999999998754  33344444432 2223333  3445


Q ss_pred             EEee----cCCcEEEEEccCCccccc----CCCCCeeEEEEeCCCCEEEEEe-cCCeEEEEECCCCceEEEEe
Q 023772          160 IGGS----VDGTVRTFDIRVGRELSD----DLGQPVNCISMSNDGNCILASC-LDSTLRLLDRSTGELLQEYK  223 (277)
Q Consensus       160 ~~g~----~d~~i~i~d~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~wd~~~~~~~~~~~  223 (277)
                      ++++    .|+.|++||++.......    .....+....|++++++|++++ .|+.|++||+.+++++....
T Consensus       227 vt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~  299 (493)
T PTZ00421        227 ITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS  299 (493)
T ss_pred             EEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee
Confidence            5543    478999999986543221    1223455667899999998887 59999999999888776543

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=7.2e-33  Score=212.64  Aligned_cols=254  Identities=23%  Similarity=0.358  Sum_probs=215.2

Q ss_pred             eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEE--------EeccCccEEEEEEcCCCCEEEEEeCCCcEEE
Q 023772           15 KGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKT--------YKSHGREVRDVHVTADNSKLISCGGDRQIFY   86 (277)
Q Consensus        15 ~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~--------~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~   86 (277)
                      .|.+.-+.|..|+|||.||+|||.||-|.+||..+|+..+.        |..+..+|.|+.|+.+...+++|+.||.||+
T Consensus       210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv  289 (508)
T KOG0275|consen  210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV  289 (508)
T ss_pred             cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence            35677799999999999999999999999999998876543        4467889999999999999999999999999


Q ss_pred             EECCCCceeEEee-cccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec--CCeEEEee
Q 023772           87 WDVSTGRVIRKFR-GHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT--KTEIIGGS  163 (277)
Q Consensus        87 wd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~  163 (277)
                      |.+++|.|++.|. +|+..|+++.|+.|+..+++++.|.++++.-+.++.  ....+.+|...+....+.  +..+++++
T Consensus       290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK--~LKEfrGHsSyvn~a~ft~dG~~iisaS  367 (508)
T KOG0275|consen  290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK--CLKEFRGHSSYVNEATFTDDGHHIISAS  367 (508)
T ss_pred             EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch--hHHHhcCccccccceEEcCCCCeEEEec
Confidence            9999999999987 899999999999999999999999999999987754  344456666666655554  56799999


Q ss_pred             cCCcEEEEEccCCcccccC----CCCCeeEEEEeCCC-CEEEEEecCCeEEEEECCCCceEEEEecc-ccceeeeeeEec
Q 023772          164 VDGTVRTFDIRVGRELSDD----LGQPVNCISMSNDG-NCILASCLDSTLRLLDRSTGELLQEYKGH-ICKSFKTDCCLT  237 (277)
Q Consensus       164 ~d~~i~i~d~~~~~~~~~~----~~~~v~~~~~s~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~  237 (277)
                      .||++++|+..+.+++.+.    ...+|+++-.-|.. ..++.+-..+++++.+++ |+.++.|... ....-...|+++
T Consensus       368 sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lS  446 (508)
T KOG0275|consen  368 SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILS  446 (508)
T ss_pred             CCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEec
Confidence            9999999999988766442    34578888877754 567888888999999996 7888888642 223345678899


Q ss_pred             CCCceEEeecCCCeEEEEECcCccceeeeccCcc
Q 023772          238 NSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSL  271 (277)
Q Consensus       238 ~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~  271 (277)
                      |.|.++...++|+.++-+...+|++...+..|..
T Consensus       447 pkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk  480 (508)
T KOG0275|consen  447 PKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK  480 (508)
T ss_pred             CCCcEEEEEccCcEEEEEEeecCceeeeeecccc
Confidence            9999999999999999999999999999998854

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=2.8e-33  Score=224.26  Aligned_cols=244  Identities=21%  Similarity=0.321  Sum_probs=199.0

Q ss_pred             ccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCC-CEEEEEeCCCcEEEEE
Q 023772           10 EANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN-SKLISCGGDRQIFYWD   88 (277)
Q Consensus        10 ~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~d~~v~~wd   88 (277)
                      ...++.||..+|..++|+++|..++|+|.|+.+++||+++|+++..|.. ...++++.|.|++ +.+++|+.|+.|+.||
T Consensus       250 ~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wD  328 (503)
T KOG0282|consen  250 CLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWD  328 (503)
T ss_pred             eehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEe
Confidence            3566789999999999999999999999999999999999999998875 4688999999998 7889999999999999


Q ss_pred             CCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcce-EeeccccCcEEEEEecCCeEEEeecCCc
Q 023772           89 VSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPI-QIIDSFQDSVMSVCLTKTEIIGGSVDGT  167 (277)
Q Consensus        89 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~d~~  167 (277)
                      +.+++.++++..|-..|..+.|-++++.+++.+.|+++++|+.+..-.... .....|.-+...+.+....++.-+.|..
T Consensus       329 iRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~  408 (503)
T KOG0282|consen  329 IRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNY  408 (503)
T ss_pred             ccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCce
Confidence            999999999999999999999999999999999999999999875432111 1122333444455555566888899999


Q ss_pred             EEEEEccCCcc-----cccCC--CCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCC
Q 023772          168 VRTFDIRVGRE-----LSDDL--GQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSD  240 (277)
Q Consensus       168 i~i~d~~~~~~-----~~~~~--~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (277)
                      |.+|.......     ....+  ..--..+.|||||.+|++|..||.+.+||.++-+++..+..|...+  +...+.|..
T Consensus       409 i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~c--i~v~wHP~e  486 (503)
T KOG0282|consen  409 IAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPC--IGVDWHPVE  486 (503)
T ss_pred             EEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcce--EEEEecCCC
Confidence            99988643221     11211  2234557999999999999999999999999999999999885544  444566644


Q ss_pred             -ceEEeecCCCeEEEEE
Q 023772          241 -AHVTGGSEDGYIYFWD  256 (277)
Q Consensus       241 -~~l~sgs~d~~i~iwd  256 (277)
                       ..+|+++.||.|++||
T Consensus       487 ~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  487 PSKVATCGWDGLIKIWD  503 (503)
T ss_pred             cceeEecccCceeEecC
Confidence             4589999999999996

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.3e-30  Score=211.05  Aligned_cols=260  Identities=19%  Similarity=0.361  Sum_probs=211.4

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCee--EEEEeccCccEEEEEEcCCCCEEEEEeCC----CcE
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIH--IKTYKSHGREVRDVHVTADNSKLISCGGD----RQI   84 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~t~s~d----~~v   84 (277)
                      ..++..|..+++-..|+|.|.||+||..-|+|||||....+.  ..+|+.-.++|..+.|+.++++|+..+.-    |.+
T Consensus        52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~  131 (603)
T KOG0318|consen   52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHV  131 (603)
T ss_pred             eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEE
Confidence            566789999999999999999999999999999999765333  34677778999999999999999988653    356


Q ss_pred             EEEECCCCceeEEeecccCceeEEEEecCCC-EEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEE
Q 023772           85 FYWDVSTGRVIRKFRGHESEVNAVKFNEYSS-VVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIG  161 (277)
Q Consensus        85 ~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  161 (277)
                      .+||  +|.-+..+.+|...|++++|-|... +++||+.|++|.+|+-.....  ...+..|...+.++.++|  ..+++
T Consensus       132 F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKF--k~s~r~HskFV~~VRysPDG~~Fat  207 (603)
T KOG0318|consen  132 FLWD--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKF--KSSFREHSKFVNCVRYSPDGSRFAT  207 (603)
T ss_pred             EEec--CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeee--eecccccccceeeEEECCCCCeEEE
Confidence            6775  5667788999999999999998754 699999999999998543221  222345666677776665  55999


Q ss_pred             eecCCcEEEEEccCCccccc-----CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEecccc-ceeeeeeE
Q 023772          162 GSVDGTVRTFDIRVGRELSD-----DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHIC-KSFKTDCC  235 (277)
Q Consensus       162 g~~d~~i~i~d~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~-~~~~~~~~  235 (277)
                      .+.||++.+||=.+++.+..     .+...|.+++|+||++.+++++.|.++||||+.+.++++++..... ..+.+-| 
T Consensus       208 ~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~-  286 (603)
T KOG0318|consen  208 AGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGC-  286 (603)
T ss_pred             ecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEE-
Confidence            99999999999988876532     3566899999999999999999999999999999999998864322 2233333 


Q ss_pred             ecCCCceEEeecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772          236 LTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL  276 (277)
Q Consensus       236 ~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  276 (277)
                      +.+ +..|++-|.+|+|.+++..+.+.++.++||...|+.|
T Consensus       287 lWq-kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaL  326 (603)
T KOG0318|consen  287 LWQ-KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITAL  326 (603)
T ss_pred             EEe-CCeEEEEEcCcEEEEecccCCChhheecccccceeEE
Confidence            444 4567888999999999999999999999999999876

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.1e-31  Score=223.66  Aligned_cols=259  Identities=15%  Similarity=0.238  Sum_probs=221.1

Q ss_pred             eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 023772           13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTG   92 (277)
Q Consensus        13 ~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~   92 (277)
                      .+.||...|++++++.+...++||+. +.++||+..+.++++++..  +.+.+..|-|.+.++++|...|.+.+||+.+.
T Consensus       368 ~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~  444 (888)
T KOG0306|consen  368 EIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASA  444 (888)
T ss_pred             eeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehh
Confidence            35799999999999999888888665 7999999999999999974  48999999999999999999999999999999


Q ss_pred             ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCC-----cceE-----eeccccCcEEEEEec--CCeEE
Q 023772           93 RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHST-----EPIQ-----IIDSFQDSVMSVCLT--KTEII  160 (277)
Q Consensus        93 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----~~~~-----~~~~~~~~~~~~~~~--~~~~~  160 (277)
                      ..+.+.++|.+.+++++..||++.++|||.|.+|++||...-..     ..+.     ..-...+.+.++..+  +..++
T Consensus       445 ~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~La  524 (888)
T KOG0306|consen  445 SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLA  524 (888)
T ss_pred             hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEE
Confidence            99999999999999999999999999999999999999742111     0100     011234556666666  45689


Q ss_pred             EeecCCcEEEEEccCCcccccC--CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecC
Q 023772          161 GGSVDGTVRTFDIRVGRELSDD--LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN  238 (277)
Q Consensus       161 ~g~~d~~i~i~d~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (277)
                      ++-.|.++++|=+.+-+-....  +.-||.||.+|||++.++|||.|+++++|-+.-|.|-+.+.+|....  ...-|-|
T Consensus       525 VsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSv--m~V~F~P  602 (888)
T KOG0306|consen  525 VSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSV--MSVQFLP  602 (888)
T ss_pred             EEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCce--eEEEEcc
Confidence            9999999999988876655443  45599999999999999999999999999999999999999986554  3445778


Q ss_pred             CCceEEeecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772          239 SDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL  276 (277)
Q Consensus       239 ~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  276 (277)
                      +..++.+++.|+.|+-||-+..+.+.++.+|...|.+|
T Consensus       603 ~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cL  640 (888)
T KOG0306|consen  603 KTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCL  640 (888)
T ss_pred             cceeEEEecCcceEEeechhhhhhheeeccchheeeee
Confidence            88889999999999999999999999999999888876

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.2e-32  Score=211.52  Aligned_cols=243  Identities=21%  Similarity=0.310  Sum_probs=204.7

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEe-ccCccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYK-SHGREVRDVHVTADNSKLISCGGDRQIFYWDV   89 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~   89 (277)
                      ...+.-|.++|.|+.|+.|...++||+.||.|++|.+.+|.+++.|. +|...|+++.|+.++..++++|.|.++++..+
T Consensus       256 qd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGl  335 (508)
T KOG0275|consen  256 QDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGL  335 (508)
T ss_pred             hcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecc
Confidence            34466799999999999999999999999999999999999999997 89999999999999999999999999999999


Q ss_pred             CCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEe---cCCeEEEeecCC
Q 023772           90 STGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCL---TKTEIIGGSVDG  166 (277)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~d~  166 (277)
                      .+|++++.|++|.+.|+...|.++|..+++++.||+|++|+..+..+.......+...++..+.+   ++.+++++....
T Consensus       336 KSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsn  415 (508)
T KOG0275|consen  336 KSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSN  415 (508)
T ss_pred             ccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCC
Confidence            99999999999999999999999999999999999999999876544322222222334444443   466788888889


Q ss_pred             cEEEEEccCCccccc-----CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCc
Q 023772          167 TVRTFDIRVGRELSD-----DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDA  241 (277)
Q Consensus       167 ~i~i~d~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (277)
                      ++.+-++.. +.+..     ..+...-+.+++|.|.++.+.++|+.++.|...+|++.+++..|+..+..  ....|..+
T Consensus       416 tv~imn~qG-QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIG--l~HHPHqN  492 (508)
T KOG0275|consen  416 TVYIMNMQG-QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIG--LTHHPHQN  492 (508)
T ss_pred             eEEEEeccc-eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccc--cccCcccc
Confidence            999988753 22221     23445666789999999999999999999999999999999988765443  34578888


Q ss_pred             eEEeecCCCeEEEEE
Q 023772          242 HVTGGSEDGYIYFWD  256 (277)
Q Consensus       242 ~l~sgs~d~~i~iwd  256 (277)
                      .+|+-++||.+++|.
T Consensus       493 llAsYsEDgllKLWk  507 (508)
T KOG0275|consen  493 LLASYSEDGLLKLWK  507 (508)
T ss_pred             hhhhhcccchhhhcC
Confidence            999999999999995

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=5.6e-31  Score=209.96  Aligned_cols=247  Identities=22%  Similarity=0.367  Sum_probs=206.3

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEE-----------------EE-eccCccEEEEEEcCCC
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIK-----------------TY-KSHGREVRDVHVTADN   72 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~-----------------~~-~~h~~~v~~~~~~~~~   72 (277)
                      ...+..|.-+|.+++++|++++.++++.|++|.-|+..+++..+                 .- +.|...+.++++++++
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            45677899999999999999999999999999999987765321                 11 2788899999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEE
Q 023772           73 SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSV  152 (277)
Q Consensus        73 ~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  152 (277)
                      ++|++|+.|..|.||+..+.+.+..+.+|...|.+++|-.....+++++.|+++++|++...  ..+.++.+|++.+..+
T Consensus       215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~--s~vetlyGHqd~v~~I  292 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL--SYVETLYGHQDGVLGI  292 (479)
T ss_pred             cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh--HHHHHHhCCccceeee
Confidence            99999999999999999999999999999999999999998899999999999999998753  4556678899999988


Q ss_pred             EecCC-eEE-EeecCCcEEEEEccCCc-ccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEec-c-cc
Q 023772          153 CLTKT-EII-GGSVDGTVRTFDIRVGR-ELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKG-H-IC  227 (277)
Q Consensus       153 ~~~~~-~~~-~g~~d~~i~i~d~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-~-~~  227 (277)
                      ..... .++ +|+.|+++++|++.... .+.......+.|++|-.+. .+++||.||.|.+|++.+.+++..... | ..
T Consensus       293 daL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~-HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~  371 (479)
T KOG0299|consen  293 DALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDE-HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVI  371 (479)
T ss_pred             chhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEeccc-ceeeccCCceEEEeeecccCceeEeecccccc
Confidence            76543 344 56699999999996543 3444556689999997654 589999999999999998888766542 2 11


Q ss_pred             --------ceeeeeeEecCCCceEEeecCCCeEEEEECcCc
Q 023772          228 --------KSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDA  260 (277)
Q Consensus       228 --------~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~  260 (277)
                              +.++...+.-|...++++||.+|+||+|.+.++
T Consensus       372 ~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  372 PELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             CCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence                    124556667788889999999999999999987

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=2.3e-31  Score=215.08  Aligned_cols=263  Identities=22%  Similarity=0.376  Sum_probs=207.3

Q ss_pred             ccccccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC----eeEEEE-eccCccEEEEEEcCCCCEEEEEeC
Q 023772            6 LPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG----IHIKTY-KSHGREVRDVHVTADNSKLISCGG   80 (277)
Q Consensus         6 ~~~~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~----~~~~~~-~~h~~~v~~~~~~~~~~~l~t~s~   80 (277)
                      +|......+++|...|.++++.|.|..++|||.|.+|+.||..--    +..+.+ ......|+++.|++.+..|+..+.
T Consensus       155 IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg  234 (641)
T KOG0772|consen  155 IPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG  234 (641)
T ss_pred             CCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec
Confidence            577777788999999999999999999999999999999996421    112222 234568999999999999999999


Q ss_pred             CCcEEEEECCCCceeEEe------------ecccCceeEEEEecCC-CEEEEEeCCCcEEEEeCccCCCcceEeec----
Q 023772           81 DRQIFYWDVSTGRVIRKF------------RGHESEVNAVKFNEYS-SVVVSAGYDQSLRAWDCRSHSTEPIQIID----  143 (277)
Q Consensus        81 d~~v~~wd~~~~~~~~~~------------~~h~~~v~~i~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----  143 (277)
                      ....+++|-...+.+...            ++|...+++-+|+|+. +.++|++.||++++||+.... ...+.+.    
T Consensus       235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k-~q~qVik~k~~  313 (641)
T KOG0772|consen  235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTK-SQLQVIKTKPA  313 (641)
T ss_pred             CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCch-hheeEEeeccC
Confidence            999999997655444332            5799999999999975 579999999999999997653 2233322    


Q ss_pred             -cccCcEEEEEecCC--eEEEeecCCcEEEEEccCCcc-----cccCC--CCCeeEEEEeCCCCEEEEEecCCeEEEEEC
Q 023772          144 -SFQDSVMSVCLTKT--EIIGGSVDGTVRTFDIRVGRE-----LSDDL--GQPVNCISMSNDGNCILASCLDSTLRLLDR  213 (277)
Q Consensus       144 -~~~~~~~~~~~~~~--~~~~g~~d~~i~i~d~~~~~~-----~~~~~--~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~  213 (277)
                       ...-++..|.+++.  .+++|..||.|.+|+.+....     +...|  ++.|+|+.||++|++|++-+.|+++++||+
T Consensus       314 ~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDL  393 (641)
T KOG0772|consen  314 GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDL  393 (641)
T ss_pred             CCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeec
Confidence             22335677777654  488999999999999864322     22223  458999999999999999999999999999


Q ss_pred             CC-CceEEEEeccccceeeeeeEecCCCceEEeec------CCCeEEEEECcCccceeeeccC
Q 023772          214 ST-GELLQEYKGHICKSFKTDCCLTNSDAHVTGGS------EDGYIYFWDLVDASVVAKFKAH  269 (277)
Q Consensus       214 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs------~d~~i~iwd~~~~~~~~~~~~h  269 (277)
                      +. ++++..+.+-......++|||||+.+++++|+      ..|.+++||..+...++++.-.
T Consensus       394 rq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~  456 (641)
T KOG0772|consen  394 RQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS  456 (641)
T ss_pred             cccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC
Confidence            76 56677777765556678899999999999974      4678999999999988888744

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=5.3e-31  Score=205.61  Aligned_cols=245  Identities=21%  Similarity=0.379  Sum_probs=191.3

Q ss_pred             cccccceeeccCCcEEEEEEeCC---CCEEEEEeCCCcEEEEcCCCCee----EEEEeccCccEEEEEEcCCCCEEEEEe
Q 023772            7 PRTEANVLKGHEGAVLAARFNGD---GNYCLSCGKDRTIRLWNPHRGIH----IKTYKSHGREVRDVHVTADNSKLISCG   79 (277)
Q Consensus         7 ~~~~~~~l~~H~~~V~~~~~~~~---~~~l~s~s~d~~v~iwd~~~~~~----~~~~~~h~~~v~~~~~~~~~~~l~t~s   79 (277)
                      ......++.||.++|.++++--.   ...++++|.|.++++|-.+.+..    ++..++|...|-++...+++.++++||
T Consensus       133 ~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS  212 (423)
T KOG0313|consen  133 KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGS  212 (423)
T ss_pred             CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeec
Confidence            34456778899999998887533   33699999999999998776543    344569999999999999999999999


Q ss_pred             CCCcEEEEECCC-------------------------CceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccC
Q 023772           80 GDRQIFYWDVST-------------------------GRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSH  134 (277)
Q Consensus        80 ~d~~v~~wd~~~-------------------------~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~  134 (277)
                      .|.++++|+.++                         ..++-++.+|+.+|.++.|.+ ...+++++.|.+|+.||+..+
T Consensus       213 ~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg  291 (423)
T KOG0313|consen  213 WDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETG  291 (423)
T ss_pred             ccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecc
Confidence            999999999321                         124567889999999999998 779999999999999999876


Q ss_pred             CCcceEeeccccCcEEEEEec--CCeEEEeecCCcEEEEEccCCcc--c---ccCCCCCeeEEEEeCCCC-EEEEEecCC
Q 023772          135 STEPIQIIDSFQDSVMSVCLT--KTEIIGGSVDGTVRTFDIRVGRE--L---SDDLGQPVNCISMSNDGN-CILASCLDS  206 (277)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~d~~i~i~d~~~~~~--~---~~~~~~~v~~~~~s~~~~-~l~~~~~d~  206 (277)
                      ..... ...  .....++...  ...+++|+.|+.|++||.|++..  +   ...+..-|.++.|+|... +|++++.|+
T Consensus       292 ~~~~~-~~~--~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~  368 (423)
T KOG0313|consen  292 GLKST-LTT--NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDN  368 (423)
T ss_pred             cceee-eec--CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCC
Confidence            43221 222  2233444443  45699999999999999997632  1   123445789999999764 578899999


Q ss_pred             eEEEEECCCCc-eEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECc
Q 023772          207 TLRLLDRSTGE-LLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLV  258 (277)
Q Consensus       207 ~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~  258 (277)
                      ++++||+++.+ ++..+.+|..+....+   ..++.++++|+.|++|+|+.-.
T Consensus       369 t~klWDvRS~k~plydI~~h~DKvl~vd---W~~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  369 TVKLWDVRSTKAPLYDIAGHNDKVLSVD---WNEGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             eEEEEEeccCCCcceeeccCCceEEEEe---ccCCceEEeccCcceEEEeccc
Confidence            99999999877 8899999966544333   4567899999999999998653

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=8.1e-31  Score=195.44  Aligned_cols=258  Identities=17%  Similarity=0.247  Sum_probs=203.8

Q ss_pred             CccccccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEE--EEeccCccEEEEEEcCC-CCEEEEEeCC
Q 023772            5 DLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIK--TYKSHGREVRDVHVTAD-NSKLISCGGD   81 (277)
Q Consensus         5 ~~~~~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~--~~~~h~~~v~~~~~~~~-~~~l~t~s~d   81 (277)
                      +++......+++|.++|-+++|+.+|..|++|+.|+++++|++...+..+  ..++|...|-.++|+|. ...+++++.|
T Consensus         7 ~~~~l~~r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~d   86 (313)
T KOG1407|consen    7 KFKSLKRRELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGD   86 (313)
T ss_pred             chhhhhhHHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCC
Confidence            33444445678999999999999999999999999999999988765443  35689999999999874 5689999999


Q ss_pred             CcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEE--ecCCeE
Q 023772           82 RQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVC--LTKTEI  159 (277)
Q Consensus        82 ~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  159 (277)
                      ++|++||...+++..........++ +.|+|++++++.++.|..|...|.+.........   ....+.-+.  .+.+.+
T Consensus        87 k~ir~wd~r~~k~~~~i~~~~eni~-i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~---~~~e~ne~~w~~~nd~F  162 (313)
T KOG1407|consen   87 KTIRIWDIRSGKCTARIETKGENIN-ITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ---FKFEVNEISWNNSNDLF  162 (313)
T ss_pred             ceEEEEEeccCcEEEEeeccCcceE-EEEcCCCCEEEEecCcccEEEEEecccceeehhc---ccceeeeeeecCCCCEE
Confidence            9999999999999888776555555 8999999999999999999999988654322211   112222333  344556


Q ss_pred             EEeecCCcEEEEEccCCcccccCCCCCe--eEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEec
Q 023772          160 IGGSVDGTVRTFDIRVGRELSDDLGQPV--NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLT  237 (277)
Q Consensus       160 ~~g~~d~~i~i~d~~~~~~~~~~~~~~v--~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  237 (277)
                      +.....|+|.|-....-+.+.....++.  .|+.|+|+|++|++|+.|..+-+||+..--+++.+.-+.=+  +...+|+
T Consensus       163 flt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwp--VRTlSFS  240 (313)
T KOG1407|consen  163 FLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWP--VRTLSFS  240 (313)
T ss_pred             EEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCc--eEEEEec
Confidence            6666679999977765555544444444  45679999999999999999999999988888888766433  3445789


Q ss_pred             CCCceEEeecCCCeEEEEECcCccceeeecc
Q 023772          238 NSDAHVTGGSEDGYIYFWDLVDASVVAKFKA  268 (277)
Q Consensus       238 ~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~  268 (277)
                      -+|++||+||+|..|-|=++++|..+.+++-
T Consensus       241 ~dg~~lASaSEDh~IDIA~vetGd~~~eI~~  271 (313)
T KOG1407|consen  241 HDGRMLASASEDHFIDIAEVETGDRVWEIPC  271 (313)
T ss_pred             cCcceeeccCccceEEeEecccCCeEEEeec
Confidence            9999999999999999999999999888874

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.4e-30  Score=196.57  Aligned_cols=258  Identities=18%  Similarity=0.335  Sum_probs=204.4

Q ss_pred             eeccCCcEEEEEEeCC-CCEEEEEeCCCcEEEEcCCC-CeeE-EEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772           14 LKGHEGAVLAARFNGD-GNYCLSCGKDRTIRLWNPHR-GIHI-KTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        14 l~~H~~~V~~~~~~~~-~~~l~s~s~d~~v~iwd~~~-~~~~-~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~   90 (277)
                      -.--++.|.+++|||. ..+++.+|.|++||+|+++. |... +....|.++|.+++|+.++.++++|+.|+.+++||+.
T Consensus        23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~  102 (347)
T KOG0647|consen   23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLA  102 (347)
T ss_pred             CCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEcc
Confidence            3445678999999994 45666899999999999876 3322 4456789999999999999999999999999999999


Q ss_pred             CCceeEEeecccCceeEEEEecCCC--EEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCCcE
Q 023772           91 TGRVIRKFRGHESEVNAVKFNEYSS--VVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTV  168 (277)
Q Consensus        91 ~~~~~~~~~~h~~~v~~i~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i  168 (277)
                      +++. .++..|..+|..+.|-+...  .|+|||.|.+|+.||.++..+  +..+ ..++.+++.......++++..++.|
T Consensus       103 S~Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p--v~t~-~LPeRvYa~Dv~~pm~vVata~r~i  178 (347)
T KOG0647|consen  103 SGQV-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP--VATL-QLPERVYAADVLYPMAVVATAERHI  178 (347)
T ss_pred             CCCe-eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCe--eeee-eccceeeehhccCceeEEEecCCcE
Confidence            9964 56888999999999987655  899999999999999996543  3332 3466788887777788899999999


Q ss_pred             EEEEccCCccc----ccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceE--EEEecccc------cee-eeeeE
Q 023772          169 RTFDIRVGREL----SDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELL--QEYKGHIC------KSF-KTDCC  235 (277)
Q Consensus       169 ~i~d~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~--~~~~~~~~------~~~-~~~~~  235 (277)
                      .+|+++.+...    .......++|++..++..-.+.|+-+|.+-+..+..++..  ..|+=|..      .++ ..+.+
T Consensus       179 ~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~  258 (347)
T KOG0647|consen  179 AVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIA  258 (347)
T ss_pred             EEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceE
Confidence            99999766432    2234567899998888877899999999999888765332  23333321      122 34468


Q ss_pred             ecCCCceEEeecCCCeEEEEECcCccceeeeccCcceeEe
Q 023772          236 LTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKL  275 (277)
Q Consensus       236 ~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~  275 (277)
                      |.|....|++++.||+..+||-.....++..+.|+.+|.+
T Consensus       259 FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItc  298 (347)
T KOG0647|consen  259 FHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITC  298 (347)
T ss_pred             eecccceEEEecCCceEEEecchhhhhhhccCcCCCccce
Confidence            8998889999999999999999888888888888888765

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.6e-31  Score=208.07  Aligned_cols=243  Identities=21%  Similarity=0.351  Sum_probs=192.6

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEec-cCccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKS-HGREVRDVHVTADNSKLISCGGDRQIFYWDV   89 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~   89 (277)
                      ..+|-||..+|..+.||||.++|++|+.|..+++||..+|.....+.. |...+.+++|.||+..+++|+.|+++..||+
T Consensus       262 ~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdl  341 (519)
T KOG0293|consen  262 KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDL  341 (519)
T ss_pred             eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecC
Confidence            466789999999999999999999999999999999999998877753 4678999999999999999999999999998


Q ss_pred             CCCceeEEeeccc-CceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEeecCC
Q 023772           90 STGRVIRKFRGHE-SEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDG  166 (277)
Q Consensus        90 ~~~~~~~~~~~h~-~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~d~  166 (277)
                      +. +....+++-+ ..|.+++..+||+.+++...|..|++++...... .-  .-....++.++..++  ..+++.-.+.
T Consensus       342 Dg-n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d-r~--lise~~~its~~iS~d~k~~LvnL~~q  417 (519)
T KOG0293|consen  342 DG-NILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD-RG--LISEEQPITSFSISKDGKLALVNLQDQ  417 (519)
T ss_pred             Cc-chhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhh-hc--cccccCceeEEEEcCCCcEEEEEcccC
Confidence            64 4455565543 4589999999999999999999999999764321 11  122345677777765  4477788899


Q ss_pred             cEEEEEccCCcccccCCCC----CeeEEEEeC-CCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCC-
Q 023772          167 TVRTFDIRVGRELSDDLGQ----PVNCISMSN-DGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSD-  240 (277)
Q Consensus       167 ~i~i~d~~~~~~~~~~~~~----~v~~~~~s~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  240 (277)
                      .+.+||+...+.+....++    -+-.-+|-- +..++++||+|+.|+||+..+++++.++.||...+  ..++++|.+ 
T Consensus       418 ei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~v--NcVswNP~~p  495 (519)
T KOG0293|consen  418 EIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTV--NCVSWNPADP  495 (519)
T ss_pred             eeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCccee--eEEecCCCCH
Confidence            9999999865555443332    233335543 44789999999999999999999999999996432  334566654 


Q ss_pred             ceEEeecCCCeEEEEECcC
Q 023772          241 AHVTGGSEDGYIYFWDLVD  259 (277)
Q Consensus       241 ~~l~sgs~d~~i~iwd~~~  259 (277)
                      .++|+||.||+||||....
T Consensus       496 ~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  496 EMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             HHhhccCCCCeEEEecCCc
Confidence            5689999999999998764

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2e-30  Score=214.71  Aligned_cols=241  Identities=22%  Similarity=0.359  Sum_probs=210.4

Q ss_pred             eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEec-cCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 023772           15 KGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKS-HGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGR   93 (277)
Q Consensus        15 ~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~   93 (277)
                      ..+++.|+++.|+++|.+|+.|-.+|.|.|||..+.+.+..+.+ |...|-+++|.  ...+.+|+.|+.|..+|+...+
T Consensus       214 ~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~  291 (484)
T KOG0305|consen  214 SFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQ  291 (484)
T ss_pred             ecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecch
Confidence            34489999999999999999999999999999999888999988 99999999998  5678899999999999998876


Q ss_pred             eeEE-eecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCe---EEEe--ecCCc
Q 023772           94 VIRK-FRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE---IIGG--SVDGT  167 (277)
Q Consensus        94 ~~~~-~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g--~~d~~  167 (277)
                      .... +.+|..+|+.+.|++++.++++|+.|+.+.|||...  .++...+..|...|.++.+.|-.   ||+|  +.|++
T Consensus       292 ~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~--~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~  369 (484)
T KOG0305|consen  292 HVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLS--PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRC  369 (484)
T ss_pred             hhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCC--ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccE
Confidence            5444 889999999999999999999999999999999843  45667778888999888887643   6664  56999


Q ss_pred             EEEEEccCCccccc-CCCCCeeEEEEeCCCCEEEEE--ecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEE
Q 023772          168 VRTFDIRVGRELSD-DLGQPVNCISMSNDGNCILAS--CLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVT  244 (277)
Q Consensus       168 i~i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~--~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  244 (277)
                      |++||..++..+.. ..+..|.+|.|++..+.|+++  ..++.|.||+..+.+++..+.+|...  ++..+++|||..++
T Consensus       370 i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~R--Vl~la~SPdg~~i~  447 (484)
T KOG0305|consen  370 IKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSR--VLYLALSPDGETIV  447 (484)
T ss_pred             EEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcce--eEEEEECCCCCEEE
Confidence            99999998887654 457789999999999888775  45678999999999999999999755  56677899999999


Q ss_pred             eecCCCeEEEEECcCcc
Q 023772          245 GGSEDGYIYFWDLVDAS  261 (277)
Q Consensus       245 sgs~d~~i~iwd~~~~~  261 (277)
                      +|+.|.++++|++-+..
T Consensus       448 t~a~DETlrfw~~f~~~  464 (484)
T KOG0305|consen  448 TGAADETLRFWNLFDER  464 (484)
T ss_pred             EecccCcEEeccccCCC
Confidence            99999999999987753

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=2.4e-29  Score=215.85  Aligned_cols=223  Identities=18%  Similarity=0.204  Sum_probs=170.4

Q ss_pred             EeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCc--------eeEEeecccCcee
Q 023772           36 CGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTAD-NSKLISCGGDRQIFYWDVSTGR--------VIRKFRGHESEVN  106 (277)
Q Consensus        36 ~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~t~s~d~~v~~wd~~~~~--------~~~~~~~h~~~v~  106 (277)
                      ||.++.+++|+......+..+.+|.++|.+++|+|+ +.+|+||+.|++|++||+.++.        ++..+.+|...|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            677899999998877788899999999999999996 6899999999999999997542        3456789999999


Q ss_pred             EEEEecCCCE-EEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEeecCCcEEEEEccCCcccccC-
Q 023772          107 AVKFNEYSSV-VVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVGRELSDD-  182 (277)
Q Consensus       107 ~i~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~d~~i~i~d~~~~~~~~~~-  182 (277)
                      ++.|+|++.. +++++.|++|++||++....  ...+. +...+.++.+++  ..+++++.|+.|++||+++++.+... 
T Consensus       130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~--~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~  206 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKR--AFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFH  206 (568)
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCcE--EEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence            9999998875 57899999999999986542  22222 345677777764  55888889999999999988765432 


Q ss_pred             -CCCCe-----eEEEEeCCCCEEEEEecCC----eEEEEECCC-CceEEEEeccccceeeeeeEecCCCceEEeecCCCe
Q 023772          183 -LGQPV-----NCISMSNDGNCILASCLDS----TLRLLDRST-GELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGY  251 (277)
Q Consensus       183 -~~~~v-----~~~~~s~~~~~l~~~~~d~----~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~  251 (277)
                       +...+     ....|++++.+|++++.|+    .|+|||++. ++++..+..+............+++.++++|+.|+.
T Consensus       207 gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~t  286 (568)
T PTZ00420        207 IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGN  286 (568)
T ss_pred             cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCe
Confidence             22222     2334668999999988774    799999984 666666544332221111223456888999999999


Q ss_pred             EEEEECcCcc
Q 023772          252 IYFWDLVDAS  261 (277)
Q Consensus       252 i~iwd~~~~~  261 (277)
                      ||+|++..+.
T Consensus       287 Ir~~e~~~~~  296 (568)
T PTZ00420        287 CRYYQHSLGS  296 (568)
T ss_pred             EEEEEccCCc
Confidence            9999998764

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=6.1e-31  Score=193.51  Aligned_cols=213  Identities=23%  Similarity=0.383  Sum_probs=186.9

Q ss_pred             eeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEe
Q 023772           51 IHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWD  130 (277)
Q Consensus        51 ~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd  130 (277)
                      +..+.+..|+++|+++.|+-+|++.+|++.|++|++|+...+.+++++.+|..+|..++.+.|...+++|+.|..+.+||
T Consensus         8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD   87 (307)
T KOG0316|consen    8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD   87 (307)
T ss_pred             hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence            34677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCcceEeeccccCcEEEEEecCCe--EEEeecCCcEEEEEccCCccc----ccCCCCCeeEEEEeCCCCEEEEEec
Q 023772          131 CRSHSTEPIQIIDSFQDSVMSVCLTKTE--IIGGSVDGTVRTFDIRVGREL----SDDLGQPVNCISMSNDGNCILASCL  204 (277)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~d~~i~i~d~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~  204 (277)
                      ..++.  ....+..|...+..+.++...  +++|+.|.++++||.|+...-    .......|.++.++  +..|++|+.
T Consensus        88 V~TGk--v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~  163 (307)
T KOG0316|consen   88 VNTGK--VDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSV  163 (307)
T ss_pred             cccCe--eeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeecc
Confidence            98764  345677888999999987654  889999999999999875422    22234567777775  456999999


Q ss_pred             CCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCcc
Q 023772          205 DSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSL  271 (277)
Q Consensus       205 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~  271 (277)
                      ||++|.||++.|+....|.+|.    +...+++++++.+..++.|+++++-|-++|++++.+++|..
T Consensus       164 DGtvRtydiR~G~l~sDy~g~p----it~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn  226 (307)
T KOG0316|consen  164 DGTVRTYDIRKGTLSSDYFGHP----ITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKN  226 (307)
T ss_pred             CCcEEEEEeecceeehhhcCCc----ceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccccc
Confidence            9999999999999988888874    35567999999999999999999999999999999999964

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.98  E-value=1.1e-31  Score=208.48  Aligned_cols=247  Identities=20%  Similarity=0.329  Sum_probs=191.5

Q ss_pred             cceeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 023772           11 ANVLKGHEGAVLAARFNGDG-NYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDV   89 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~   89 (277)
                      ...|.||.++|.+++=+|.. ..++||+.||.|+|||+.+-.++.+|++|.+.|..+++..  ..++++|.|++||.|-+
T Consensus        59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~  136 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI  136 (433)
T ss_pred             hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence            44578999999999999977 7899999999999999999999999999999999999986  67999999999998873


Q ss_pred             CC--------------------------------------CceeEEeecccCceeEEEEecCC-CEEEEEeCCCcEEEEe
Q 023772           90 ST--------------------------------------GRVIRKFRGHESEVNAVKFNEYS-SVVVSAGYDQSLRAWD  130 (277)
Q Consensus        90 ~~--------------------------------------~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~~~d~~i~iwd  130 (277)
                      +.                                      ..++.++......|.++.|+|.. ..|++|+.|+.|.+||
T Consensus       137 ~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD  216 (433)
T KOG0268|consen  137 DGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYD  216 (433)
T ss_pred             cCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEe
Confidence            21                                      11233444445567777777764 4677888999999999


Q ss_pred             CccCCCcceEeeccccCcEEEEEecC--CeEEEeecCCcEEEEEccCCcccc---cCCCCCeeEEEEeCCCCEEEEEecC
Q 023772          131 CRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVGRELS---DDLGQPVNCISMSNDGNCILASCLD  205 (277)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~d~~i~i~d~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~d  205 (277)
                      +++..+....++....   ..++|+|  ..+++|..|..+..||++.-....   ..+...|.+++|||.|+-+++||.|
T Consensus       217 ~R~~~Pl~KVi~~mRT---N~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyD  293 (433)
T KOG0268|consen  217 LRQASPLKKVILTMRT---NTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYD  293 (433)
T ss_pred             cccCCccceeeeeccc---cceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccccc
Confidence            9987665444444333   3445555  348899999999999998655432   2445688999999999999999999


Q ss_pred             CeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccce
Q 023772          206 STLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVV  263 (277)
Q Consensus       206 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~  263 (277)
                      .+||||....+.-...|...- ......+.+|-|.+|+++||.|++||+|...-.+.+
T Consensus       294 ksIRIf~~~~~~SRdiYhtkR-Mq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl  350 (433)
T KOG0268|consen  294 KSIRIFPVNHGHSRDIYHTKR-MQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL  350 (433)
T ss_pred             ceEEEeecCCCcchhhhhHhh-hheeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence            999999998776554442210 112344567889999999999999999987654443

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=2.7e-31  Score=219.80  Aligned_cols=242  Identities=24%  Similarity=0.427  Sum_probs=202.2

Q ss_pred             ccCCcEE---EEEEe-CCCCEEEEEeCCCcEEEEcCCCC------eeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEE
Q 023772           16 GHEGAVL---AARFN-GDGNYCLSCGKDRTIRLWNPHRG------IHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIF   85 (277)
Q Consensus        16 ~H~~~V~---~~~~~-~~~~~l~s~s~d~~v~iwd~~~~------~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~   85 (277)
                      .|...|.   .+..+ |.++||+|||.||.||+|+...-      ..+..++.|..-|+.+....+++.|+++|.|.+|+
T Consensus        19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK   98 (735)
T KOG0308|consen   19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVK   98 (735)
T ss_pred             hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE
Confidence            4666666   55555 46678999999999999986432      13667889999999999999999999999999999


Q ss_pred             EEECCCC--ceeEEeecccCceeEEEE-ecCCCEEEEEeCCCcEEEEeCccCCC--------cceEeec-cccCcEEEEE
Q 023772           86 YWDVSTG--RVIRKFRGHESEVNAVKF-NEYSSVVVSAGYDQSLRAWDCRSHST--------EPIQIID-SFQDSVMSVC  153 (277)
Q Consensus        86 ~wd~~~~--~~~~~~~~h~~~v~~i~~-~~~~~~l~s~~~d~~i~iwd~~~~~~--------~~~~~~~-~~~~~~~~~~  153 (277)
                      +|+...+  -++.+++.|+..|.++++ -++..++++||.|+.|++||++....        .....+. ++..++++++
T Consensus        99 ~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA  178 (735)
T KOG0308|consen   99 VWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLA  178 (735)
T ss_pred             EeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeee
Confidence            9999877  578889999999999999 77888999999999999999985421        1122222 5667788888


Q ss_pred             ecCC--eEEEeecCCcEEEEEccCCcccccC--CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccce
Q 023772          154 LTKT--EIIGGSVDGTVRTFDIRVGRELSDD--LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKS  229 (277)
Q Consensus       154 ~~~~--~~~~g~~d~~i~i~d~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~  229 (277)
                      .+++  .+++|+..+.|++||.++++++...  +-..|+++..++||..++++|.||+|++||+...+++.+|..|...+
T Consensus       179 ~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~V  258 (735)
T KOG0308|consen  179 MNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGV  258 (735)
T ss_pred             cCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCce
Confidence            8776  5889999999999999998876553  45689999999999999999999999999999999999999997765


Q ss_pred             eeeeeEecCCCceEEeecCCCeEEEEECcC
Q 023772          230 FKTDCCLTNSDAHVTGGSEDGYIYFWDLVD  259 (277)
Q Consensus       230 ~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~  259 (277)
                      +.+.  .+|.-..+.+|+.||.|+.=|+.+
T Consensus       259 WaL~--~~~sf~~vYsG~rd~~i~~Tdl~n  286 (735)
T KOG0308|consen  259 WALQ--SSPSFTHVYSGGRDGNIYRTDLRN  286 (735)
T ss_pred             EEEe--eCCCcceEEecCCCCcEEecccCC
Confidence            5444  356777899999999999999988

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=3.1e-31  Score=208.91  Aligned_cols=239  Identities=21%  Similarity=0.343  Sum_probs=201.5

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~   90 (277)
                      ..+|.|-.++|+.+.|.++++.+++++.|+.+++|+....+...++.+|...|+++.|......+++|+.|.++|+||+.
T Consensus       212 ~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~  291 (459)
T KOG0288|consen  212 ISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQ  291 (459)
T ss_pred             hhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhh
Confidence            45677888999999999999999999999999999999999999999999999999999888889999999999999999


Q ss_pred             CCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec--CCeEEEeecCCcE
Q 023772           91 TGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT--KTEIIGGSVDGTV  168 (277)
Q Consensus        91 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~d~~i  168 (277)
                      ...+.+++.. .+.++.|..+  ...+++|-.|++|+.||.+.......  .. ..+.+.++..+  +..+++.+-|.++
T Consensus       292 k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~s--v~-~gg~vtSl~ls~~g~~lLsssRDdtl  365 (459)
T KOG0288|consen  292 KAYCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRS--VP-LGGRVTSLDLSMDGLELLSSSRDDTL  365 (459)
T ss_pred             hhheeccccc-cccccceEec--ceeeeecccccceEEEeccCCceeeE--ee-cCcceeeEeeccCCeEEeeecCCCce
Confidence            9888877653 4455666665  56889999999999999987654322  22 23366666654  5568888999999


Q ss_pred             EEEEccCCccccc------CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCce
Q 023772          169 RTFDIRVGRELSD------DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAH  242 (277)
Q Consensus       169 ~i~d~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (277)
                      .+.|+++.+....      ..+..++.+.|||++.|+++||.||.++||++.++++...+........++.+.|.|-|..
T Consensus       366 ~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~  445 (459)
T KOG0288|consen  366 KVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSG  445 (459)
T ss_pred             eeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCch
Confidence            9999997653321      2345688999999999999999999999999999999988877655546788889999999


Q ss_pred             EEeecCCCeEEEE
Q 023772          243 VTGGSEDGYIYFW  255 (277)
Q Consensus       243 l~sgs~d~~i~iw  255 (277)
                      +++++.++.+.+|
T Consensus       446 Llsadk~~~v~lW  458 (459)
T KOG0288|consen  446 LLSADKQKAVTLW  458 (459)
T ss_pred             hhcccCCcceEec
Confidence            9999999999999

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=8.2e-30  Score=204.67  Aligned_cols=237  Identities=20%  Similarity=0.373  Sum_probs=195.5

Q ss_pred             eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCC-CEEEEEeCCCcEEEEECCCC
Q 023772           14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN-SKLISCGGDRQIFYWDVSTG   92 (277)
Q Consensus        14 l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~d~~v~~wd~~~~   92 (277)
                      +..-+..|.++.|-.||++++.|...|.|+|+|..+...++.+.+|+.++..+.|+|.. ..+++|+.|+.+++||+.+.
T Consensus        64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a  143 (487)
T KOG0310|consen   64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA  143 (487)
T ss_pred             HHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc
Confidence            33456789999999999999999999999999977656678899999999999999955 56778899999999999999


Q ss_pred             ceeEEeecccCceeEEEEecC-CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC--eEEEeecCCcEE
Q 023772           93 RVIRKFRGHESEVNAVKFNEY-SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--EIIGGSVDGTVR  169 (277)
Q Consensus        93 ~~~~~~~~h~~~v~~i~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~  169 (277)
                      .....+.+|+..|.+.+++|. +.+++|||+||+|++||.+... .++.. -.|..++-.+.+-|.  .++++ ....++
T Consensus       144 ~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~e-lnhg~pVe~vl~lpsgs~iasA-gGn~vk  220 (487)
T KOG0310|consen  144 YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVE-LNHGCPVESVLALPSGSLIASA-GGNSVK  220 (487)
T ss_pred             EEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-ceeEE-ecCCCceeeEEEcCCCCEEEEc-CCCeEE
Confidence            887789999999999999987 4589999999999999999764 33333 346667766665544  34444 456899


Q ss_pred             EEEccCCccccc---CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEee
Q 023772          170 TFDIRVGRELSD---DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGG  246 (277)
Q Consensus       170 i~d~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg  246 (277)
                      +||+.++.+...   .+...|+|+.+..++..|++|+-|+.+++||..+.+.+..+.-   +...+++.++|++..++.|
T Consensus       221 VWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~---~~pvLsiavs~dd~t~viG  297 (487)
T KOG0310|consen  221 VWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY---PGPVLSIAVSPDDQTVVIG  297 (487)
T ss_pred             EEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec---ccceeeEEecCCCceEEEe
Confidence            999997655433   2556899999999999999999999999999888888876643   3456888899999999999


Q ss_pred             cCCCeEEEEE
Q 023772          247 SEDGYIYFWD  256 (277)
Q Consensus       247 s~d~~i~iwd  256 (277)
                      -.||.+-+=+
T Consensus       298 msnGlv~~rr  307 (487)
T KOG0310|consen  298 MSNGLVSIRR  307 (487)
T ss_pred             cccceeeeeh
Confidence            9999886653

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=8.8e-29  Score=212.38  Aligned_cols=204  Identities=17%  Similarity=0.216  Sum_probs=158.1

Q ss_pred             cceeeccCCcEEEEEEeCC-CCEEEEEeCCCcEEEEcCCCCe--------eEEEEeccCccEEEEEEcCCCCEE-EEEeC
Q 023772           11 ANVLKGHEGAVLAARFNGD-GNYCLSCGKDRTIRLWNPHRGI--------HIKTYKSHGREVRDVHVTADNSKL-ISCGG   80 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~-~~~l~s~s~d~~v~iwd~~~~~--------~~~~~~~h~~~v~~~~~~~~~~~l-~t~s~   80 (277)
                      ...+.+|.++|.+++|+|+ +.+|+|||.|++|+|||+.++.        ++..+.+|...|.+++|+|++..+ ++++.
T Consensus        67 v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~  146 (568)
T PTZ00420         67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGF  146 (568)
T ss_pred             EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeC
Confidence            4567899999999999996 7899999999999999987532        345678899999999999988765 68999


Q ss_pred             CCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEE-----E--
Q 023772           81 DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSV-----C--  153 (277)
Q Consensus        81 d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-----~--  153 (277)
                      |++|++||+++++.+..+. |...|.+++|++++.+|++++.|++|++||+++..  .+..+..|...+...     .  
T Consensus       147 DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~--~i~tl~gH~g~~~s~~v~~~~fs  223 (568)
T PTZ00420        147 DSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE--IASSFHIHDGGKNTKNIWIDGLG  223 (568)
T ss_pred             CCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCc--EEEEEecccCCceeEEEEeeeEc
Confidence            9999999999998877776 66789999999999999999999999999998753  334455555433221     1  


Q ss_pred             ecCCeEEEeecCC----cEEEEEccCC-ccccc-CCC---CCeeEEEEeCCCCEEEEEecCCeEEEEECCCCc
Q 023772          154 LTKTEIIGGSVDG----TVRTFDIRVG-RELSD-DLG---QPVNCISMSNDGNCILASCLDSTLRLLDRSTGE  217 (277)
Q Consensus       154 ~~~~~~~~g~~d~----~i~i~d~~~~-~~~~~-~~~---~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~  217 (277)
                      .+...+++++.|+    +|++||++.. ..+.. ...   ..+......++|.++++|+.|+.||+|++..+.
T Consensus       224 ~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~  296 (568)
T PTZ00420        224 GDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS  296 (568)
T ss_pred             CCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence            2345688877774    7999999853 32221 111   222223334568889999999999999998764

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=1.5e-30  Score=198.66  Aligned_cols=216  Identities=18%  Similarity=0.280  Sum_probs=179.3

Q ss_pred             EEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC------------C------ceeEEeecccCceeEEEEecCC
Q 023772           53 IKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVST------------G------RVIRKFRGHESEVNAVKFNEYS  114 (277)
Q Consensus        53 ~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~------------~------~~~~~~~~h~~~v~~i~~~~~~  114 (277)
                      ...+..|..++++.+|+++|.+++|||.|..||++|++.            +      -+++++..|..+|+.+.|+|..
T Consensus       105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre  184 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE  184 (430)
T ss_pred             eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence            456678999999999999999999999999999999861            1      2578899999999999999999


Q ss_pred             CEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEE--EEecCCeEEEeecCCcEEEEEccCCccccc-----CCCCCe
Q 023772          115 SVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMS--VCLTKTEIIGGSVDGTVRTFDIRVGRELSD-----DLGQPV  187 (277)
Q Consensus       115 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~-----~~~~~v  187 (277)
                      ..|++++.|++|++||......++....-....++.+  +.+++..++.|...-++++||+.+-+++..     .+...|
T Consensus       185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai  264 (430)
T KOG0640|consen  185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI  264 (430)
T ss_pred             heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence            9999999999999999875433322211112234444  445566788999999999999998876532     345689


Q ss_pred             eEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeec
Q 023772          188 NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFK  267 (277)
Q Consensus       188 ~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~  267 (277)
                      +++.+++.|+..++++.||.|+|||--+++++.++........+.+..|..+++|+.+.+.|..+++|.+.+++++.++.
T Consensus       265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Yt  344 (430)
T KOG0640|consen  265 TQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYT  344 (430)
T ss_pred             eEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEe
Confidence            99999999999999999999999999999999888653334556777899999999999999999999999999999887


Q ss_pred             c
Q 023772          268 A  268 (277)
Q Consensus       268 ~  268 (277)
                      |
T Consensus       345 G  345 (430)
T KOG0640|consen  345 G  345 (430)
T ss_pred             c
Confidence            5

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=2e-28  Score=186.61  Aligned_cols=249  Identities=17%  Similarity=0.309  Sum_probs=198.5

Q ss_pred             cCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q 023772           17 HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIR   96 (277)
Q Consensus        17 H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~   96 (277)
                      -++.|.++.|+|.+..|+.++.||++|+||.........++ |.+++.+++|.+ ...+++|+.||.|+.+|+++++.. 
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-   88 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-   88 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-
Confidence            35779999999999999999999999999998876555554 889999999986 468999999999999999987754 


Q ss_pred             EeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCCcEEEEEccCC
Q 023772           97 KFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVG  176 (277)
Q Consensus        97 ~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~  176 (277)
                      .+..|..+|.+|.+.+-...+++||.|++|++||.+......  .+ .....|.++...++.|++|..|..+.+||+|+.
T Consensus        89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~--~~-d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~  165 (323)
T KOG1036|consen   89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVG--TF-DQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNL  165 (323)
T ss_pred             eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccc--cc-ccCceEEEEeccCCEEEEeecCceEEEEEcccc
Confidence            466799999999999988999999999999999998632221  12 233478999999999999999999999999987


Q ss_pred             cccc----cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCC----ceEEEEeccc-------cceeeeeeEecCCCc
Q 023772          177 RELS----DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTG----ELLQEYKGHI-------CKSFKTDCCLTNSDA  241 (277)
Q Consensus       177 ~~~~----~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~----~~~~~~~~~~-------~~~~~~~~~~~~~~~  241 (277)
                      ....    .....+++|+++-|++.-+++++-||.+.+=.+...    +.-..|+-|.       .........|+|-..
T Consensus       166 ~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~  245 (323)
T KOG1036|consen  166 DEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG  245 (323)
T ss_pred             cchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc
Confidence            6543    234568999999998777899999998876433322    2222344331       112234467889888


Q ss_pred             eEEeecCCCeEEEEECcCccceeeeccCcc
Q 023772          242 HVTGGSEDGYIYFWDLVDASVVAKFKAHSL  271 (277)
Q Consensus       242 ~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~  271 (277)
                      .++||+.||.|.+||+.+.+.+.+|..-..
T Consensus       246 tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~  275 (323)
T KOG1036|consen  246 TFATGGSDGIVNIWDLFNRKRLKQLAKYET  275 (323)
T ss_pred             eEEecCCCceEEEccCcchhhhhhccCCCC
Confidence            999999999999999999988888876543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=5e-29  Score=197.66  Aligned_cols=245  Identities=17%  Similarity=0.307  Sum_probs=205.9

Q ss_pred             cccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023772            9 TEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWD   88 (277)
Q Consensus         9 ~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd   88 (277)
                      +...+|.||...|+.+.|+++...+++++.|..||||.............|..+|+.+..+|.++||++++.|++.-..|
T Consensus       252 q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd  331 (506)
T KOG0289|consen  252 QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSD  331 (506)
T ss_pred             hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEE
Confidence            44677899999999999999999999999999999999877777778889999999999999999999999999999999


Q ss_pred             CCCCceeEEeec--ccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCe--EEEeec
Q 023772           89 VSTGRVIRKFRG--HESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE--IIGGSV  164 (277)
Q Consensus        89 ~~~~~~~~~~~~--h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~  164 (277)
                      .+++..+.....  ....+++..|+|||.+|.+|..|+.+++||+.++.  ....+..|.+++..+.|+.+.  ++++..
T Consensus       332 ~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~ad  409 (506)
T KOG0289|consen  332 ISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAAD  409 (506)
T ss_pred             ccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEec
Confidence            999988766543  23468999999999999999999999999998765  455677899999999998665  889999


Q ss_pred             CCcEEEEEccCCcccccC---CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCC--ceEEEEeccccceeeeeeEecCC
Q 023772          165 DGTVRTFDIRVGRELSDD---LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTG--ELLQEYKGHICKSFKTDCCLTNS  239 (277)
Q Consensus       165 d~~i~i~d~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~  239 (277)
                      |+.|++||+|..+.+...   ...++.+++|++.|++|++++.|=+|++++-.+.  +++..+..|.  .....+.|...
T Consensus       410 d~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~s--g~st~v~Fg~~  487 (506)
T KOG0289|consen  410 DGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHS--GLSTGVRFGEH  487 (506)
T ss_pred             CCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcc--cccceeeeccc
Confidence            999999999987655442   3347999999999999999988877777775544  3444555453  23444567788


Q ss_pred             CceEEeecCCCeEEEEEC
Q 023772          240 DAHVTGGSEDGYIYFWDL  257 (277)
Q Consensus       240 ~~~l~sgs~d~~i~iwd~  257 (277)
                      ..+++++|.|..++++.+
T Consensus       488 aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  488 AQYLASTSMDAILRLYAL  505 (506)
T ss_pred             ceEEeeccchhheEEeec
Confidence            899999999999988764

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.5e-29  Score=203.09  Aligned_cols=250  Identities=20%  Similarity=0.298  Sum_probs=203.0

Q ss_pred             CCcEEEEEEeCCCC--EEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 023772           18 EGAVLAARFNGDGN--YCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVI   95 (277)
Q Consensus        18 ~~~V~~~~~~~~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~   95 (277)
                      .++|.+++|+|...  ..+|+|  -.+.||+..+....+++..-...+.++.|-.||+++++|...|.|++||+.+...+
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~S--~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL  103 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTSS--VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL  103 (487)
T ss_pred             cCcceeEecCCCCCCceEEecc--cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence            46799999999543  444444  48999998887777777767789999999999999999999999999997776778


Q ss_pred             EEeecccCceeEEEEecCC-CEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC---eEEEeecCCcEEEE
Q 023772           96 RKFRGHESEVNAVKFNEYS-SVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT---EIIGGSVDGTVRTF  171 (277)
Q Consensus        96 ~~~~~h~~~v~~i~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~d~~i~i~  171 (277)
                      +.+.+|+.+|..+.|+|++ .++++|+.|+.+++||+.+.. . ...+..|.+.+.+.++.+.   .+++|++||+|++|
T Consensus       104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~  181 (487)
T KOG0310|consen  104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-V-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLW  181 (487)
T ss_pred             HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE-E-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEE
Confidence            8999999999999999874 568889999999999998654 2 3356788888888777653   59999999999999


Q ss_pred             EccCC-cc-cccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCC-ceEEEEeccccceeeeeeEecCCCceEEeecC
Q 023772          172 DIRVG-RE-LSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTG-ELLQEYKGHICKSFKTDCCLTNSDAHVTGGSE  248 (277)
Q Consensus       172 d~~~~-~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~  248 (277)
                      |.+.. .. ....++.||..+.+-|.|+.|++++. ..+++||+.+| +.+..+..|.+.  .++.++..++..|.+|+-
T Consensus       182 DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~Kt--VTcL~l~s~~~rLlS~sL  258 (487)
T KOG0310|consen  182 DTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKT--VTCLRLASDSTRLLSGSL  258 (487)
T ss_pred             EeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccce--EEEEEeecCCceEeeccc
Confidence            99976 32 33467899999999999998888765 47999999865 444455546543  455667788899999999


Q ss_pred             CCeEEEEECcCccceeeeccCcceeE
Q 023772          249 DGYIYFWDLVDASVVAKFKAHSLVVK  274 (277)
Q Consensus       249 d~~i~iwd~~~~~~~~~~~~h~~~v~  274 (277)
                      |+.+++||+.+.+.++..+-......
T Consensus       259 D~~VKVfd~t~~Kvv~s~~~~~pvLs  284 (487)
T KOG0310|consen  259 DRHVKVFDTTNYKVVHSWKYPGPVLS  284 (487)
T ss_pred             ccceEEEEccceEEEEeeecccceee
Confidence            99999999999999988876544433

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4.5e-29  Score=191.30  Aligned_cols=246  Identities=24%  Similarity=0.445  Sum_probs=202.0

Q ss_pred             ceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCC--------------------
Q 023772           12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTAD--------------------   71 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~--------------------   71 (277)
                      ..+.||++.|..++.......|.++|.|.+.+||.+++|.++.++.+|.+.|++++|++.                    
T Consensus       142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av  221 (481)
T KOG0300|consen  142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAV  221 (481)
T ss_pred             hhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhh
Confidence            446799999999998887789999999999999999999999999999999999988665                    


Q ss_pred             --------------------------------------------------------------CCEEEEEeCCCcEEEEEC
Q 023772           72 --------------------------------------------------------------NSKLISCGGDRQIFYWDV   89 (277)
Q Consensus        72 --------------------------------------------------------------~~~l~t~s~d~~v~~wd~   89 (277)
                                                                                    ++.++|+|+|.+..+||+
T Consensus       222 ~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDV  301 (481)
T KOG0300|consen  222 NWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDV  301 (481)
T ss_pred             cCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeee
Confidence                                                                          455777888888889999


Q ss_pred             CCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC-CeEEEeecCCcE
Q 023772           90 STGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK-TEIIGGSVDGTV  168 (277)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~d~~i  168 (277)
                      ++++++..+.+|..+.+-+.-+|..+++++.+.|.+.++||.+. ....+..+.+|.+.+.+..+.. ..+++|+.|.++
T Consensus       302 Etge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe-aI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTv  380 (481)
T KOG0300|consen  302 ETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE-AIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTV  380 (481)
T ss_pred             ccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchh-hcceeeeecccccceeEEEEecCCceeecCCCceE
Confidence            99999999999999999899999999999999999999999984 3456677899999999999874 559999999999


Q ss_pred             EEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEE----EEeccccceeeeeeEecCC--C
Q 023772          169 RTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQ----EYKGHICKSFKTDCCLTNS--D  240 (277)
Q Consensus       169 ~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~----~~~~~~~~~~~~~~~~~~~--~  240 (277)
                      ++||++..+....  ....+++-++++..+..|+.-..++.+|+||+.-..+.+    .-.+|  ..+...|++..+  -
T Consensus       381 KvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgH--rRMV~c~AW~eehp~  458 (481)
T KOG0300|consen  381 KVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGH--RRMVTCCAWLEEHPA  458 (481)
T ss_pred             EEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCccccccc--ceeeeeeeccccCcc
Confidence            9999998764322  356789999999888899999999999999997544322    22345  344555555432  2


Q ss_pred             ceEEeecCCCeEEEEECcCc
Q 023772          241 AHVTGGSEDGYIYFWDLVDA  260 (277)
Q Consensus       241 ~~l~sgs~d~~i~iwd~~~~  260 (277)
                      .-|.+++-|+.+.-|++..-
T Consensus       459 cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  459 CNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             cccccccccceeeeeEeccc
Confidence            34778888999999998754

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=8.4e-29  Score=197.92  Aligned_cols=245  Identities=16%  Similarity=0.300  Sum_probs=198.2

Q ss_pred             EEEEE-eCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEE
Q 023772           32 YCLSC-GKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKF  110 (277)
Q Consensus        32 ~l~s~-s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~  110 (277)
                      +++++ ..-..+-+|.+...........-.++|.++.-+|+|.+++.|.-.+.+++|.+.+|.++..+.+|-.+|+++.|
T Consensus        52 yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~f  131 (476)
T KOG0646|consen   52 YLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKF  131 (476)
T ss_pred             heeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEE
Confidence            44443 22345566665544333322233578999999999999998889999999999999999999999999999999


Q ss_pred             ecCCCEEEEEeCCCcEEEEeCc-------cCCCcceEeeccccCcEEEEEecC----CeEEEeecCCcEEEEEccCCccc
Q 023772          111 NEYSSVVVSAGYDQSLRAWDCR-------SHSTEPIQIIDSFQDSVMSVCLTK----TEIIGGSVDGTVRTFDIRVGREL  179 (277)
Q Consensus       111 ~~~~~~l~s~~~d~~i~iwd~~-------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~g~~d~~i~i~d~~~~~~~  179 (277)
                      +.|+.+|+|||.||.|.+|++.       .+..++...+..|.-+|..+....    ..+++.+.|.++++||+..+..+
T Consensus       132 s~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL  211 (476)
T KOG0646|consen  132 SDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL  211 (476)
T ss_pred             eCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceee
Confidence            9999999999999999999863       235567778888888888887754    34999999999999999998765


Q ss_pred             cc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCC----------------CceEEEEeccccceeeeeeEecCCCce
Q 023772          180 SD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRST----------------GELLQEYKGHICKSFKTDCCLTNSDAH  242 (277)
Q Consensus       180 ~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (277)
                      .. ..+.++.+++++|.+..+..|+.+|.|.+.++..                +..+..+.||.....++..+++-||..
T Consensus       212 lti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgtl  291 (476)
T KOG0646|consen  212 LTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTL  291 (476)
T ss_pred             EEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccE
Confidence            54 4577899999999999999999999999887632                234567778877556777788999999


Q ss_pred             EEeecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772          243 VTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL  276 (277)
Q Consensus       243 l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  276 (277)
                      |++|+.||++++||+...++++++..-.++|+.|
T Consensus       292 LlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL  325 (476)
T KOG0646|consen  292 LLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNL  325 (476)
T ss_pred             EEeeCCCCCEEEEecchHHHHHHHhhhcccccee
Confidence            9999999999999999999998887555555543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=2.1e-28  Score=194.20  Aligned_cols=253  Identities=19%  Similarity=0.225  Sum_probs=208.3

Q ss_pred             CcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe
Q 023772           19 GAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKF   98 (277)
Q Consensus        19 ~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~   98 (277)
                      ..++++...+..+.++||+.|.++.++|..++..+.+|++|...|+++.++++...+++++.|..|++|...........
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~  299 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS  299 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence            35778888888789999999999999999999999999999999999999999999999999999999999888888888


Q ss_pred             ecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCe--EEEeecCCcEEEEEccCC
Q 023772           99 RGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE--IIGGSVDGTVRTFDIRVG  176 (277)
Q Consensus        99 ~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~d~~i~i~d~~~~  176 (277)
                      ..|..+|+.+..+|.+++|++++.|++....|+++........-+..+-.+.+..+.|+.  +.+|..|+.+++||+..+
T Consensus       300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~  379 (506)
T KOG0289|consen  300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ  379 (506)
T ss_pred             ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCc
Confidence            999999999999999999999999999999999876432222222223345566666655  678899999999999877


Q ss_pred             ccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEE
Q 023772          177 RELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYF  254 (277)
Q Consensus       177 ~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~i  254 (277)
                      .....  .+..+|..+.|+.+|-||++++.|+.|++||++.-+..++|...... .....+|.+.|.+++.++.|=+|++
T Consensus       380 ~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SGt~L~~~g~~l~Vy~  458 (506)
T KOG0289|consen  380 TNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSGTYLGIAGSDLQVYI  458 (506)
T ss_pred             cccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCCCeEEeecceeEEEE
Confidence            64432  46679999999999999999999999999999988888887765433 2455677888999999988877777


Q ss_pred             EECc--CccceeeeccCcce
Q 023772          255 WDLV--DASVVAKFKAHSLV  272 (277)
Q Consensus       255 wd~~--~~~~~~~~~~h~~~  272 (277)
                      ++-.  +...+.++.-|++.
T Consensus       459 ~~k~~k~W~~~~~~~~~sg~  478 (506)
T KOG0289|consen  459 CKKKTKSWTEIKELADHSGL  478 (506)
T ss_pred             Eecccccceeeehhhhcccc
Confidence            7633  45566777777643

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.97  E-value=2.1e-28  Score=204.00  Aligned_cols=245  Identities=20%  Similarity=0.354  Sum_probs=201.7

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeE--EEEeccCccEEE-EEEcC-CCCEEEEEeCCCcEEE
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHI--KTYKSHGREVRD-VHVTA-DNSKLISCGGDRQIFY   86 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~--~~~~~h~~~v~~-~~~~~-~~~~l~t~s~d~~v~~   86 (277)
                      ...+.||+..|..+++.+. ..++++|.||++++|+...+..+  ..+.+|.+-|.. +++.+ ++.++++|+.|.++.+
T Consensus         7 s~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v   85 (745)
T KOG0301|consen    7 SHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIV   85 (745)
T ss_pred             EEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEE
Confidence            4568899999999887655 48899999999999997655443  456777777776 77775 5557999999999999


Q ss_pred             EECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC-CeEEEeecC
Q 023772           87 WDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK-TEIIGGSVD  165 (277)
Q Consensus        87 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~d  165 (277)
                      |.+.+..+..++++|.+.|+++....++. ++|||.|.++++|-...    ....+..|+..|.++..-+ +.+++|+.|
T Consensus        86 ~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~----l~~~l~gH~asVWAv~~l~e~~~vTgsaD  160 (745)
T KOG0301|consen   86 FKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE----LVYSLQGHTASVWAVASLPENTYVTGSAD  160 (745)
T ss_pred             EecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh----hhcccCCcchheeeeeecCCCcEEeccCc
Confidence            99999999999999999999999988887 99999999999997643    2334778999999887654 459999999


Q ss_pred             CcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEe
Q 023772          166 GTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTG  245 (277)
Q Consensus       166 ~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  245 (277)
                      ++|++|.-.+.......|...|+.+++-+++. +++++.||.|++|++ ++.++.++.+|.+..+...  ...++..+++
T Consensus       161 KtIklWk~~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis--~~~~~~~Ivs  236 (745)
T KOG0301|consen  161 KTIKLWKGGTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSIS--MALSDGLIVS  236 (745)
T ss_pred             ceeeeccCCchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeeeccceEEEEEE--ecCCCCeEEE
Confidence            99999987554444455777899999998865 789999999999999 7889999999987666655  4566778999


Q ss_pred             ecCCCeEEEEECcCccceeeec
Q 023772          246 GSEDGYIYFWDLVDASVVAKFK  267 (277)
Q Consensus       246 gs~d~~i~iwd~~~~~~~~~~~  267 (277)
                      .++|++++||+..  ++++.+.
T Consensus       237 ~gEDrtlriW~~~--e~~q~I~  256 (745)
T KOG0301|consen  237 TGEDRTLRIWKKD--ECVQVIT  256 (745)
T ss_pred             ecCCceEEEeecC--ceEEEEe
Confidence            9999999999987  5555544

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=5.1e-28  Score=203.44  Aligned_cols=238  Identities=16%  Similarity=0.306  Sum_probs=202.1

Q ss_pred             CcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC-----Cc
Q 023772           19 GAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVST-----GR   93 (277)
Q Consensus        19 ~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~-----~~   93 (277)
                      +-+.+..|-|.++++++|...|.+.+||+.+...+.+.++|.+.+++++.+|+++.++|||.|++|++||.+-     +.
T Consensus       413 ~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt  492 (888)
T KOG0306|consen  413 GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGT  492 (888)
T ss_pred             ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcc
Confidence            3577888999999999999999999999999999999999999999999999999999999999999999641     11


Q ss_pred             e--eEEe-----ecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEeec
Q 023772           94 V--IRKF-----RGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSV  164 (277)
Q Consensus        94 ~--~~~~-----~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~  164 (277)
                      .  +-++     ..-+..|.++.++||+++++.+-.|.++++|-+.+.  +-...+.+|.-+|.++..++  ..+++|+.
T Consensus       493 ~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl--KFflsLYGHkLPV~smDIS~DSklivTgSA  570 (888)
T KOG0306|consen  493 QKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL--KFFLSLYGHKLPVLSMDISPDSKLIVTGSA  570 (888)
T ss_pred             cceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecce--eeeeeecccccceeEEeccCCcCeEEeccC
Confidence            1  1111     124678999999999999999999999999988753  33445678888888887765  55999999


Q ss_pred             CCcEEEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCce
Q 023772          165 DGTVRTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAH  242 (277)
Q Consensus       165 d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (277)
                      |+.+++|-+.-|.+...  .++..|.++.|-|+...+++++.|+.++-||-...+.++.+.+|....+  ..+.+|+|.+
T Consensus       571 DKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~--cLav~~~G~~  648 (888)
T KOG0306|consen  571 DKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVW--CLAVSPNGSF  648 (888)
T ss_pred             CCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheee--eeEEcCCCCe
Confidence            99999998876665444  3567899999999999999999999999999999999999999976543  3457899999


Q ss_pred             EEeecCCCeEEEEECcCc
Q 023772          243 VTGGSEDGYIYFWDLVDA  260 (277)
Q Consensus       243 l~sgs~d~~i~iwd~~~~  260 (277)
                      ++++|.|.+||+|...+.
T Consensus       649 vvs~shD~sIRlwE~tde  666 (888)
T KOG0306|consen  649 VVSSSHDKSIRLWERTDE  666 (888)
T ss_pred             EEeccCCceeEeeeccCc
Confidence            999999999999997663

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=3e-28  Score=194.49  Aligned_cols=226  Identities=21%  Similarity=0.394  Sum_probs=190.2

Q ss_pred             eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 023772           15 KGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRV   94 (277)
Q Consensus        15 ~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~   94 (277)
                      ++|...+.+++.++||+||++|+.|..+.||+..+.+.++.+.+|.+.|.+++|-.....+++++.|+++++|+++....
T Consensus       199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~  278 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY  278 (479)
T ss_pred             ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH
Confidence            48999999999999999999999999999999999999999999999999999998888999999999999999998888


Q ss_pred             eEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEe-cCCeEEEeecCCcEEEEEc
Q 023772           95 IRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCL-TKTEIIGGSVDGTVRTFDI  173 (277)
Q Consensus        95 ~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~d~~i~i~d~  173 (277)
                      +.++.+|.+.|.+|+...-.+.+-.|+.|+++++|++..   +...++..+...+-++++ +..++++|+.+|.|.+|++
T Consensus       279 vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e---esqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~  355 (479)
T KOG0299|consen  279 VETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE---ESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSL  355 (479)
T ss_pred             HHHHhCCccceeeechhcccceEEeccccceeEEEeccc---cceeeeeCCCCCeeeEEEecccceeeccCCceEEEeee
Confidence            999999999999999988777777777999999999943   223345666667777775 5677999999999999999


Q ss_pred             cCCcccccC---C---------CC--CeeEEEEeCCCCEEEEEecCCeEEEEECCCC----ceEEEEeccccceeeeeeE
Q 023772          174 RVGRELSDD---L---------GQ--PVNCISMSNDGNCILASCLDSTLRLLDRSTG----ELLQEYKGHICKSFKTDCC  235 (277)
Q Consensus       174 ~~~~~~~~~---~---------~~--~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~----~~~~~~~~~~~~~~~~~~~  235 (277)
                      -+.+.+...   +         +.  -|++++..|....+++|+.+|.+|+|-...+    +++..+.   ...++...+
T Consensus       356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls---~~GfVNsl~  432 (479)
T KOG0299|consen  356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS---LVGFVNSLA  432 (479)
T ss_pred             cccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc---cccEEEEEE
Confidence            877654321   1         11  4788999999999999999999999998776    3444443   234567778


Q ss_pred             ecCCCceEEee
Q 023772          236 LTNSDAHVTGG  246 (277)
Q Consensus       236 ~~~~~~~l~sg  246 (277)
                      |+++|+++++|
T Consensus       433 f~~sgk~ivag  443 (479)
T KOG0299|consen  433 FSNSGKRIVAG  443 (479)
T ss_pred             EccCCCEEEEe
Confidence            89999866554

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.3e-28  Score=183.01  Aligned_cols=207  Identities=23%  Similarity=0.383  Sum_probs=175.1

Q ss_pred             ccccccceeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCC-CCEEEEEeCCCc
Q 023772            6 LPRTEANVLKGHEGAVLAARFNG-DGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTAD-NSKLISCGGDRQ   83 (277)
Q Consensus         6 ~~~~~~~~l~~H~~~V~~~~~~~-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~t~s~d~~   83 (277)
                      +|..+...++.|+..|.++.|++ .++.++++|.|++||+|+..-+..+.+|.+|...|....|+|. .+.++++|.|++
T Consensus        92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~  171 (311)
T KOG0277|consen   92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT  171 (311)
T ss_pred             CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence            36667888999999999999998 4567778899999999999999999999999999999999995 568899999999


Q ss_pred             EEEEECCCCceeEEeecccCceeEEEEecC-CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCe---E
Q 023772           84 IFYWDVSTGRVIRKFRGHESEVNAVKFNEY-SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE---I  159 (277)
Q Consensus        84 v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  159 (277)
                      +++||++.......+..|..++.++.|+.. .++++||+.|+.|+.||++.-. .++..+.+|.-.|..+.++|..   +
T Consensus       172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r-~pl~eL~gh~~AVRkvk~Sph~~~lL  250 (311)
T KOG0277|consen  172 LRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR-TPLFELNGHGLAVRKVKFSPHHASLL  250 (311)
T ss_pred             EEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc-ccceeecCCceEEEEEecCcchhhHh
Confidence            999999764433448999999999999864 6789999999999999998754 4566778888889999998865   8


Q ss_pred             EEeecCCcEEEEEccCCcc---cccCCCCCeeEEEEeC-CCCEEEEEecCCeEEEEEC
Q 023772          160 IGGSVDGTVRTFDIRVGRE---LSDDLGQPVNCISMSN-DGNCILASCLDSTLRLLDR  213 (277)
Q Consensus       160 ~~g~~d~~i~i~d~~~~~~---~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~wd~  213 (277)
                      ++++.|-++|+||...+..   ....+.+-+..+.|++ +..++++.+.|..+++|+.
T Consensus       251 aSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  251 ASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             hhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            9999999999999975532   2234555677888887 4578999999999999985

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=4.9e-28  Score=179.09  Aligned_cols=240  Identities=17%  Similarity=0.251  Sum_probs=189.0

Q ss_pred             eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC---eeEEEEeccCccEEEEEEcC--CCCEEEEEeCCCcEEEEE
Q 023772           14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG---IHIKTYKSHGREVRDVHVTA--DNSKLISCGGDRQIFYWD   88 (277)
Q Consensus        14 l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~---~~~~~~~~h~~~v~~~~~~~--~~~~l~t~s~d~~v~~wd   88 (277)
                      -.+|++.|-.+..+--|+.|+|||.|++|||+...+.   .++.++.+|.+||+.++|..  -|..|++++.||+|.+|.
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk   86 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK   86 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence            3679999999888888999999999999999987653   56789999999999999975  688999999999999999


Q ss_pred             CCCCc--eeEEeecccCceeEEEEecC--CCEEEEEeCCCcEEEEeCccCC-CcceEeeccccCcEEEEEecC-------
Q 023772           89 VSTGR--VIRKFRGHESEVNAVKFNEY--SSVVVSAGYDQSLRAWDCRSHS-TEPIQIIDSFQDSVMSVCLTK-------  156 (277)
Q Consensus        89 ~~~~~--~~~~~~~h~~~v~~i~~~~~--~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~-------  156 (277)
                      -++++  ....+..|...|++++|-|.  +-+|++++.||.|.+.+.+... -....+...|...+.++++.|       
T Consensus        87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~  166 (299)
T KOG1332|consen   87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL  166 (299)
T ss_pred             cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence            88773  34556789999999999876  6689999999999999987641 112233445666666666543       


Q ss_pred             ---------CeEEEeecCCcEEEEEccCCc----ccccCCCCCeeEEEEeCCC----CEEEEEecCCeEEEEECCCC---
Q 023772          157 ---------TEIIGGSVDGTVRTFDIRVGR----ELSDDLGQPVNCISMSNDG----NCILASCLDSTLRLLDRSTG---  216 (277)
Q Consensus       157 ---------~~~~~g~~d~~i~i~d~~~~~----~~~~~~~~~v~~~~~s~~~----~~l~~~~~d~~i~~wd~~~~---  216 (277)
                               ..|++|+.|..++||+...++    .....+..-|+.++|.|.-    .+|+++++||++.||..+..   
T Consensus       167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~  246 (299)
T KOG1332|consen  167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP  246 (299)
T ss_pred             cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence                     248999999999999998753    1233455678999999853    57999999999999987532   


Q ss_pred             ---ceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECc
Q 023772          217 ---ELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLV  258 (277)
Q Consensus       217 ---~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~  258 (277)
                         +++..|     +...-..++|..|+.|+.+.-|+.+.+|.-.
T Consensus       247 wk~tll~~f-----~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  247 WKKTLLEEF-----PDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             ccccccccC-----CcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence               222222     2233445678889999999999999999654

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=5.3e-26  Score=166.92  Aligned_cols=241  Identities=17%  Similarity=0.237  Sum_probs=190.8

Q ss_pred             eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEc------CCCC---------eeEEEEeccCccEEEEEEcCCCCEEEEE
Q 023772           14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWN------PHRG---------IHIKTYKSHGREVRDVHVTADNSKLISC   78 (277)
Q Consensus        14 l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd------~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~l~t~   78 (277)
                      +-.-..+|.+++|.|.|.+.+.||+..++||--      ++.+         ...+.-+.|.+.|.|.+|+|++++|+||
T Consensus        28 ~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatg  107 (350)
T KOG0641|consen   28 ILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATG  107 (350)
T ss_pred             EecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEec
Confidence            344667899999999999999999999999963      2111         1123345689999999999999999999


Q ss_pred             eCCCcEEEEECCCCce-----eEEeecccCceeEEEEecC----CCEEEEEe-CCCcEEEEeCccCCCcceEeeccccCc
Q 023772           79 GGDRQIFYWDVSTGRV-----IRKFRGHESEVNAVKFNEY----SSVVVSAG-YDQSLRAWDCRSHSTEPIQIIDSFQDS  148 (277)
Q Consensus        79 s~d~~v~~wd~~~~~~-----~~~~~~h~~~v~~i~~~~~----~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~  148 (277)
                      |.|++||+...+...+     -..|.-|.+.|..++|..+    +.++++++ .|..|.+-|+.  .......+.+|.+.
T Consensus       108 sndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~--~g~~~~a~sghtgh  185 (350)
T KOG0641|consen  108 SNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCG--RGQGFHALSGHTGH  185 (350)
T ss_pred             CCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecC--CCCcceeecCCccc
Confidence            9999999987654332     2357789999999999754    44666654 35555555554  34556777788887


Q ss_pred             EEEE-EecCCeEEEeecCCcEEEEEccCCccccc---------CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCce
Q 023772          149 VMSV-CLTKTEIIGGSVDGTVRTFDIRVGRELSD---------DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGEL  218 (277)
Q Consensus       149 ~~~~-~~~~~~~~~g~~d~~i~i~d~~~~~~~~~---------~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~  218 (277)
                      +.++ .+++-.+++|+.|++|++||++-...+..         .....|.+++++|.|+.|++|..|....+||++-+..
T Consensus       186 ilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~  265 (350)
T KOG0641|consen  186 ILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM  265 (350)
T ss_pred             EEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCce
Confidence            7654 67888899999999999999987654432         1235799999999999999999999999999999999


Q ss_pred             EEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECc
Q 023772          219 LQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLV  258 (277)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~  258 (277)
                      ++.|..|...  +...-|+|...|+.++|.|..|++=|+.
T Consensus       266 iq~f~phsad--ir~vrfsp~a~yllt~syd~~ikltdlq  303 (350)
T KOG0641|consen  266 IQRFHPHSAD--IRCVRFSPGAHYLLTCSYDMKIKLTDLQ  303 (350)
T ss_pred             eeeeCCCccc--eeEEEeCCCceEEEEecccceEEEeecc
Confidence            9999888543  4555689999999999999999999986

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=2e-27  Score=181.93  Aligned_cols=247  Identities=18%  Similarity=0.254  Sum_probs=188.8

Q ss_pred             EEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeec
Q 023772           21 VLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRG  100 (277)
Q Consensus        21 V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~  100 (277)
                      .+|+.|++.|.+||.|+.||.|.|||..|...-+.+.+|..+|.+++|+++|.+|+|+|.|..|++||+..|.+++.++ 
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence            7899999999999999999999999999988888999999999999999999999999999999999999999988877 


Q ss_pred             ccCceeEEEEecCCC-EEEEEeCCCcEEEEeCccCCCcceEeec---cccCcE---EEEEecCCeEEEeecCCcEEEEEc
Q 023772          101 HESEVNAVKFNEYSS-VVVSAGYDQSLRAWDCRSHSTEPIQIID---SFQDSV---MSVCLTKTEIIGGSVDGTVRTFDI  173 (277)
Q Consensus       101 h~~~v~~i~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~g~~d~~i~i~d~  173 (277)
                      ..++|+...|+|... .++.+-.+..-.+-++...  .......   .....+   ..+...++++++|...|.+.+||.
T Consensus       105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~--~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a  182 (405)
T KOG1273|consen  105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP--KHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA  182 (405)
T ss_pred             ccCccceeeeccccCCeEEEEEecCCcEEEEecCC--ceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence            578999999998543 3333333333333333211  1110000   000111   124456788999999999999999


Q ss_pred             cCCcccccC---CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCC-------Cc--eEEEEeccccceeeeeeEecCCCc
Q 023772          174 RVGRELSDD---LGQPVNCISMSNDGNCILASCLDSTLRLLDRST-------GE--LLQEYKGHICKSFKTDCCLTNSDA  241 (277)
Q Consensus       174 ~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~-------~~--~~~~~~~~~~~~~~~~~~~~~~~~  241 (277)
                      .+.+.+...   .-+.|..+.|+..|.+|+..+.|+.||.|+.+.       ++  +.+.+....++.....|||+.+|.
T Consensus       183 ~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dge  262 (405)
T KOG1273|consen  183 ETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGE  262 (405)
T ss_pred             chheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCcc
Confidence            887654321   236789999999999999999999999999752       12  223343334455667789999999


Q ss_pred             eEEeec-CCCeEEEEECcCccceeeeccCc
Q 023772          242 HVTGGS-EDGYIYFWDLVDASVVAKFKAHS  270 (277)
Q Consensus       242 ~l~sgs-~d~~i~iwd~~~~~~~~~~~~h~  270 (277)
                      |+..|+ ....+|||.-..|.+++.|.|-.
T Consensus       263 Yv~a~s~~aHaLYIWE~~~GsLVKILhG~k  292 (405)
T KOG1273|consen  263 YVCAGSARAHALYIWEKSIGSLVKILHGTK  292 (405)
T ss_pred             EEEeccccceeEEEEecCCcceeeeecCCc
Confidence            987765 56679999999999999998765

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.96  E-value=2.6e-27  Score=188.82  Aligned_cols=244  Identities=23%  Similarity=0.336  Sum_probs=193.5

Q ss_pred             eccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEcCCCC----------eeEEEEeccCccEEEEEEcCC-CCEEEEEeCCC
Q 023772           15 KGHEGAVLAARFNGDG-NYCLSCGKDRTIRLWNPHRG----------IHIKTYKSHGREVRDVHVTAD-NSKLISCGGDR   82 (277)
Q Consensus        15 ~~H~~~V~~~~~~~~~-~~l~s~s~d~~v~iwd~~~~----------~~~~~~~~h~~~v~~~~~~~~-~~~l~t~s~d~   82 (277)
                      --|.+.|+.+++-|+. ..+++.+..+.+.|||..+.          .+-..+.+|.+.-.++.|++. ..++++++.|+
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~  200 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH  200 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence            3599999999999966 56667899999999996532          122378899988899999974 45899999999


Q ss_pred             cEEEEECCCCc-------eeEEeecccCceeEEEEecC-CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEe
Q 023772           83 QIFYWDVSTGR-------VIRKFRGHESEVNAVKFNEY-SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCL  154 (277)
Q Consensus        83 ~v~~wd~~~~~-------~~~~~~~h~~~v~~i~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  154 (277)
                      +|.+||+....       +...+.+|...|..++|++. ..+|++++.|+.+.|||.|+...++......|...+.++.+
T Consensus       201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f  280 (422)
T KOG0264|consen  201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF  280 (422)
T ss_pred             cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence            99999996432       34568899999999999986 45789999999999999997434445556778889999998


Q ss_pred             cCC---eEEEeecCCcEEEEEccCCcccc---cCCCCCeeEEEEeCCC-CEEEEEecCCeEEEEECCCC-----------
Q 023772          155 TKT---EIIGGSVDGTVRTFDIRVGRELS---DDLGQPVNCISMSNDG-NCILASCLDSTLRLLDRSTG-----------  216 (277)
Q Consensus       155 ~~~---~~~~g~~d~~i~i~d~~~~~~~~---~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~wd~~~~-----------  216 (277)
                      ++.   .+++|+.|+++.+||+|.-....   ..+...|.++.|+|.. ..|++++.|+.+.+||+..-           
T Consensus       281 np~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~d  360 (422)
T KOG0264|consen  281 NPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAED  360 (422)
T ss_pred             CCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhcc
Confidence            864   38999999999999999765432   2456789999999965 56788899999999998542           


Q ss_pred             ---ceEEEEeccccceeeeeeEecCCCce-EEeecCCCeEEEEECcCc
Q 023772          217 ---ELLQEYKGHICKSFKTDCCLTNSDAH-VTGGSEDGYIYFWDLVDA  260 (277)
Q Consensus       217 ---~~~~~~~~~~~~~~~~~~~~~~~~~~-l~sgs~d~~i~iwd~~~~  260 (277)
                         +++....||...  +.+..+.|...+ +++.++|+.+.||+..+.
T Consensus       361 gppEllF~HgGH~~k--V~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~  406 (422)
T KOG0264|consen  361 GPPELLFIHGGHTAK--VSDFSWNPNEPWTIASVAEDNILQIWQMAEN  406 (422)
T ss_pred             CCcceeEEecCcccc--cccccCCCCCCeEEEEecCCceEEEeecccc
Confidence               223455677544  466677888877 567899999999998754

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=6.6e-26  Score=166.45  Aligned_cols=242  Identities=23%  Similarity=0.369  Sum_probs=185.8

Q ss_pred             eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCC--CCe---eEEEEeccCccEEEEEEcCC----CCEEEEEe-CCCc
Q 023772           14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPH--RGI---HIKTYKSHGREVRDVHVTAD----NSKLISCG-GDRQ   83 (277)
Q Consensus        14 l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~--~~~---~~~~~~~h~~~v~~~~~~~~----~~~l~t~s-~d~~   83 (277)
                      .+.|++.|.|.+|+|+|++|++||+|.+|++--.+  +..   .-..|..|.+.|+.++|..+    +..|++++ .|..
T Consensus        85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~  164 (350)
T KOG0641|consen   85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCK  164 (350)
T ss_pred             ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcce
Confidence            36799999999999999999999999999996433  322   23468889999999999643    44566655 4777


Q ss_pred             EEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccc-----cCcEEEEEecC--
Q 023772           84 IFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSF-----QDSVMSVCLTK--  156 (277)
Q Consensus        84 v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~--  156 (277)
                      |.+-|..+|+....+.+|++-|.++ ++-++-++++|+.|.+|+.||++-+......--..+     ...+.+++.+|  
T Consensus       165 iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsg  243 (350)
T KOG0641|consen  165 IYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSG  243 (350)
T ss_pred             EEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCc
Confidence            8888888999999999999999865 455678999999999999999986543222111111     13455566554  


Q ss_pred             CeEEEeecCCcEEEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCC---c-eEEEEecccccee
Q 023772          157 TEIIGGSVDGTVRTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTG---E-LLQEYKGHICKSF  230 (277)
Q Consensus       157 ~~~~~g~~d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~---~-~~~~~~~~~~~~~  230 (277)
                      ..+++|-.|....+||++.++.+..  .+...|+|+.|+|..-|+++++.|..|++=|++-.   + .+.....|..+  
T Consensus       244 rll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk--  321 (350)
T KOG0641|consen  244 RLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDK--  321 (350)
T ss_pred             ceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCc--
Confidence            5589999999999999999887755  45568999999999999999999999999998631   1 12222334333  


Q ss_pred             eeeeEecCCCceEEeecCCCeEEEEECc
Q 023772          231 KTDCCLTNSDAHVTGGSEDGYIYFWDLV  258 (277)
Q Consensus       231 ~~~~~~~~~~~~l~sgs~d~~i~iwd~~  258 (277)
                      ...|-+.|.+.-+++.|.|.++.+|-++
T Consensus       322 ~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  322 AIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             eEEEEecCccceeeeccCcceEEEeccC
Confidence            4556788999889999999999999764

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.96  E-value=4.8e-27  Score=196.03  Aligned_cols=233  Identities=21%  Similarity=0.319  Sum_probs=190.1

Q ss_pred             eeeccCCcEEE-EEEeC-CCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772           13 VLKGHEGAVLA-ARFNG-DGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        13 ~l~~H~~~V~~-~~~~~-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~   90 (277)
                      .+.+|.+-|.. ++|.+ ++-.+++|+.|..+.+|......++.++++|...|-+++...++. +++||+|.++++|-  
T Consensus        52 ~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~--  128 (745)
T KOG0301|consen   52 AFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWR--  128 (745)
T ss_pred             ecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEec--
Confidence            35678888877 88886 555689999999999999999999999999999999999877766 99999999999995  


Q ss_pred             CCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC-eEEEeecCCcEE
Q 023772           91 TGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT-EIIGGSVDGTVR  169 (277)
Q Consensus        91 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~d~~i~  169 (277)
                      .+++..++.+|+.+|+++...|.+ .++||+.|.+|++|.-.    .....+..|.+.|..+..-+. .+++++.||.|+
T Consensus       129 ~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~----~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir  203 (745)
T KOG0301|consen  129 IGELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG----TLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIR  203 (745)
T ss_pred             chhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCC----chhhhhccchhheeeeEEecCCCeEeecCCceEE
Confidence            467788899999999999999987 88999999999999752    345667789999988887655 899999999999


Q ss_pred             EEEccCCcccccCCC--CCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeec
Q 023772          170 TFDIRVGRELSDDLG--QPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGS  247 (277)
Q Consensus       170 i~d~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs  247 (277)
                      .|++ .++.+...++  .-+.+++...++..++++++|+++++|+..  .+.+.+..-.... .. ++..++|. +++|+
T Consensus       204 ~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsi-Ws-a~~L~NgD-Ivvg~  277 (745)
T KOG0301|consen  204 LWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSI-WS-AKVLLNGD-IVVGG  277 (745)
T ss_pred             EEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccce-EE-EEEeeCCC-EEEec
Confidence            9999 6666666554  468889877778889999999999999987  6777765432222 22 22333333 78889


Q ss_pred             CCCeEEEEECcC
Q 023772          248 EDGYIYFWDLVD  259 (277)
Q Consensus       248 ~d~~i~iwd~~~  259 (277)
                      +||.||||..+.
T Consensus       278 SDG~VrVfT~~k  289 (745)
T KOG0301|consen  278 SDGRVRVFTVDK  289 (745)
T ss_pred             cCceEEEEEecc
Confidence            999999998764

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=2.8e-26  Score=175.92  Aligned_cols=242  Identities=19%  Similarity=0.377  Sum_probs=183.3

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC------------------------------------eeEE
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG------------------------------------IHIK   54 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~------------------------------------~~~~   54 (277)
                      ...|+||.+.|++++|+.||++|+|++.|++||+|++...                                    ..+.
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence            4568999999999999999999999999999999986421                                    0111


Q ss_pred             EE-----------------------eccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEe
Q 023772           55 TY-----------------------KSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFN  111 (277)
Q Consensus        55 ~~-----------------------~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~  111 (277)
                      .+                       +.|+-++-++-...++++|++++.|.+|.+|++. |+.+.++..........+.+
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS  237 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS  237 (420)
T ss_pred             EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence            11                       1234445555566667899999999999999998 88888887766677788999


Q ss_pred             cCCCEEEEEeCCCcEEEEeCcc------CCCcceEeeccccCcEEEEEecCC--eEEEeecCCcEEEEEccCC----cc-
Q 023772          112 EYSSVVVSAGYDQSLRAWDCRS------HSTEPIQIIDSFQDSVMSVCLTKT--EIIGGSVDGTVRTFDIRVG----RE-  178 (277)
Q Consensus       112 ~~~~~l~s~~~d~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~i~d~~~~----~~-  178 (277)
                      |+|+++++++.-..|++|.+--      .+..++..+.+|+..+.+.+++++  .+++.+.||++++||..-.    +. 
T Consensus       238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDp  317 (420)
T KOG2096|consen  238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDP  317 (420)
T ss_pred             CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCc
Confidence            9999999999999999998632      123455667889999999998765  5999999999999997421    11 


Q ss_pred             --cc------cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCC
Q 023772          179 --LS------DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDG  250 (277)
Q Consensus       179 --~~------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~  250 (277)
                        +.      ...+...-.++++|+|+.|+.+ ....|++|..++++...++..-. ..-+...+++++|+++++.+ |+
T Consensus       318 k~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s-~gs~l~~~~se~g~~~~~~e~~h-~~~Is~is~~~~g~~~atcG-dr  394 (420)
T KOG2096|consen  318 KILKEGSAPLHAAGSEPVRLELSPSGDSLAVS-FGSDLKVFASEDGKDYPELEDIH-STTISSISYSSDGKYIATCG-DR  394 (420)
T ss_pred             hHhhcCCcchhhcCCCceEEEeCCCCcEEEee-cCCceEEEEcccCccchhHHHhh-cCceeeEEecCCCcEEeeec-ce
Confidence              11      1112333479999999976665 45679999999988776665321 23456678899999999976 67


Q ss_pred             eEEEEE
Q 023772          251 YIYFWD  256 (277)
Q Consensus       251 ~i~iwd  256 (277)
                      .+++..
T Consensus       395 ~vrv~~  400 (420)
T KOG2096|consen  395 YVRVIR  400 (420)
T ss_pred             eeeeec
Confidence            888875

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=5.9e-29  Score=208.24  Aligned_cols=222  Identities=22%  Similarity=0.414  Sum_probs=194.7

Q ss_pred             ceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 023772           12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVST   91 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~   91 (277)
                      +.+..|...|.++..-..++.+++|+.|..+-+|....-..+..+.+|..+|.++.|++...+|++|+.+|+||+||++.
T Consensus        22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee  101 (825)
T KOG0267|consen   22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE  101 (825)
T ss_pred             hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence            34567999999999878889999999999999999877777778999999999999999999999999999999999999


Q ss_pred             CceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCCcEEEE
Q 023772           92 GRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTF  171 (277)
Q Consensus        92 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~  171 (277)
                      ++.++++.+|...+.+++|+|.+.++++|+.|+.+++||.+...                               ++..|
T Consensus       102 Ak~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G-------------------------------c~~~~  150 (825)
T KOG0267|consen  102 AKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG-------------------------------CSHTY  150 (825)
T ss_pred             hhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccC-------------------------------ceeee
Confidence            99999999999999999999999999999999999999987422                               12222


Q ss_pred             EccCCcccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCe
Q 023772          172 DIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGY  251 (277)
Q Consensus       172 d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~  251 (277)
                      +         .+...+.++.|+|+|.+++.+++|..+++||+..|+...+|..|.+....++  +.|.+.++++|+.|++
T Consensus       151 ~---------s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle--~hp~e~Lla~Gs~d~t  219 (825)
T KOG0267|consen  151 K---------SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLE--FHPLEVLLAPGSSDRT  219 (825)
T ss_pred             c---------CCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccc--cCchhhhhccCCCCce
Confidence            1         1234578899999999999999999999999999999999999987776665  7888889999999999


Q ss_pred             EEEEECcCccceeeeccCcceeEe
Q 023772          252 IYFWDLVDASVVAKFKAHSLVVKL  275 (277)
Q Consensus       252 i~iwd~~~~~~~~~~~~h~~~v~~  275 (277)
                      +++||+++.+++...+.....|+.
T Consensus       220 v~f~dletfe~I~s~~~~~~~v~~  243 (825)
T KOG0267|consen  220 VRFWDLETFEVISSGKPETDGVRS  243 (825)
T ss_pred             eeeeccceeEEeeccCCccCCcee
Confidence            999999999998888776555554

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.95  E-value=1e-26  Score=192.51  Aligned_cols=255  Identities=22%  Similarity=0.396  Sum_probs=196.3

Q ss_pred             EEEEEeC---CCCEEEEEeCCCcEEEEcCCCCe------eEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 023772           22 LAARFNG---DGNYCLSCGKDRTIRLWNPHRGI------HIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTG   92 (277)
Q Consensus        22 ~~~~~~~---~~~~l~s~s~d~~v~iwd~~~~~------~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~   92 (277)
                      .+..|++   ....|+-+.+||.|.++|.....      .++.+..|...|..+.|.|....|++++.|.+++.||++++
T Consensus        53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s  132 (720)
T KOG0321|consen   53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS  132 (720)
T ss_pred             ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence            3466664   45688899999999999976532      24667789999999999998789999999999999999999


Q ss_pred             ceeEE--eecccCceeEEEEecCC-CEEEEEeCCCcEEEEeCccCCCc------------------ceEee-------cc
Q 023772           93 RVIRK--FRGHESEVNAVKFNEYS-SVVVSAGYDQSLRAWDCRSHSTE------------------PIQII-------DS  144 (277)
Q Consensus        93 ~~~~~--~~~h~~~v~~i~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~------------------~~~~~-------~~  144 (277)
                      +++..  +.+|...|.+++|.+.. ..|++|+.||.|.|||++.....                  +....       ..
T Consensus       133 ~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA  212 (720)
T KOG0321|consen  133 RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA  212 (720)
T ss_pred             eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence            98776  89999999999999874 57899999999999998753210                  00000       00


Q ss_pred             ----ccCcEEEEEe-cCCeEEEeec-CCcEEEEEccCCcccccC----------C---CCCeeEEEEeCCCCEEEEEecC
Q 023772          145 ----FQDSVMSVCL-TKTEIIGGSV-DGTVRTFDIRVGRELSDD----------L---GQPVNCISMSNDGNCILASCLD  205 (277)
Q Consensus       145 ----~~~~~~~~~~-~~~~~~~g~~-d~~i~i~d~~~~~~~~~~----------~---~~~v~~~~~s~~~~~l~~~~~d  205 (277)
                          ....|+.+.+ +...|++++. |+.|++||++........          +   ..-+.++..+..|.+|++.+.|
T Consensus       213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD  292 (720)
T KOG0321|consen  213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD  292 (720)
T ss_pred             ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC
Confidence                1122333333 3445777766 999999999976543211          1   1246788888899999999999


Q ss_pred             CeEEEEECCCC--ceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccc-eeeeccCcceeEee
Q 023772          206 STLRLLDRSTG--ELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASV-VAKFKAHSLVVKLL  276 (277)
Q Consensus       206 ~~i~~wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~-~~~~~~h~~~v~~~  276 (277)
                      +.|++||+.+.  .++..|.++....+....+.+|++.++++|+.|...++|.+.+.+. ...+.+|...|..+
T Consensus       293 ~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V  366 (720)
T KOG0321|consen  293 NSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTV  366 (720)
T ss_pred             CcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEE
Confidence            99999999753  4567788887777777778899999999999999999999998665 46667888777654

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.95  E-value=3.8e-26  Score=173.52  Aligned_cols=255  Identities=20%  Similarity=0.320  Sum_probs=188.3

Q ss_pred             eeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEcCCCCe------------eE---EEEeccCccEEEEEEcC-CCCEEE
Q 023772           14 LKGHEGAVLAARFNG-DGNYCLSCGKDRTIRLWNPHRGI------------HI---KTYKSHGREVRDVHVTA-DNSKLI   76 (277)
Q Consensus        14 l~~H~~~V~~~~~~~-~~~~l~s~s~d~~v~iwd~~~~~------------~~---~~~~~h~~~v~~~~~~~-~~~~l~   76 (277)
                      -+-|.+.|+++...+ +|+|++||+.||.+.+||++...            ++   ..-.+|...|.++.|-| +...+.
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt  118 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT  118 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence            457999999999987 78999999999999999986532            10   01135788899999988 677899


Q ss_pred             EEeCCCcEEEEECCCCceeEEeecccCceeEEEEecC---CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEE
Q 023772           77 SCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEY---SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVC  153 (277)
Q Consensus        77 t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  153 (277)
                      ++|.|.++|+||+++.+....|+ -+..|.+-+++|-   ..++++|..|-+|++.|+.++..  ..++.+|.+.+.++.
T Consensus       119 ssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~--sH~LsGHr~~vlaV~  195 (397)
T KOG4283|consen  119 SSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF--SHTLSGHRDGVLAVE  195 (397)
T ss_pred             cccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc--eeeeccccCceEEEE
Confidence            99999999999999988776665 4556666666653   45789999999999999987654  456788999999999


Q ss_pred             ecCCe---EEEeecCCcEEEEEccCCc-cc----------------ccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEEC
Q 023772          154 LTKTE---IIGGSVDGTVRTFDIRVGR-EL----------------SDDLGQPVNCISMSNDGNCILASCLDSTLRLLDR  213 (277)
Q Consensus       154 ~~~~~---~~~g~~d~~i~i~d~~~~~-~~----------------~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~  213 (277)
                      ++|..   +++|+.||.|++||+|... ++                ...+...++.++|+.++.++++.+.|..+++|+.
T Consensus       196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~  275 (397)
T KOG4283|consen  196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM  275 (397)
T ss_pred             eccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence            98865   8899999999999998541 11                0123356899999999999999999999999999


Q ss_pred             CCCceE-EEEec--c---ccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCcceeE
Q 023772          214 STGELL-QEYKG--H---ICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVK  274 (277)
Q Consensus       214 ~~~~~~-~~~~~--~---~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~  274 (277)
                      .+|+-- +.|..  |   ....+... +...  ..++.-=.|+.+.++++-+++.+..++.|=..|.
T Consensus       276 ~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s--~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~  339 (397)
T KOG4283|consen  276 ESGRNTLREFGPIIHNQTTSFAVHIQ-SMDS--DVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRIN  339 (397)
T ss_pred             ccCcccccccccccccccccceEEEe-eccc--ceEEEEecCCeEEEEEccCceEEEeeecccceee
Confidence            876431 11111  0   11111111 1111  1122222457888899888888888888844443

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=8.6e-27  Score=198.44  Aligned_cols=203  Identities=21%  Similarity=0.304  Sum_probs=162.3

Q ss_pred             cccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcC-CCCEEEEEeCCCcEEEE
Q 023772            9 TEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTA-DNSKLISCGGDRQIFYW   87 (277)
Q Consensus         9 ~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~d~~v~~w   87 (277)
                      ++...+.||.+.|+.+.|+.++ +|+|+|.|.+||+|++....+++.|. |...|+|++|+| |.++|++|+-|++|+||
T Consensus       360 kP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiW  437 (712)
T KOG0283|consen  360 KPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLW  437 (712)
T ss_pred             cchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEe
Confidence            4455678999999999999874 88999999999999999999999996 899999999999 66899999999999999


Q ss_pred             ECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccc------cCcEEEEEec---CCe
Q 023772           88 DVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSF------QDSVMSVCLT---KTE  158 (277)
Q Consensus        88 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~~---~~~  158 (277)
                      ++...+++. +..-..-|++++|.|+|+..+.|+.+|.+++|+...........+..+      ...|+.+.+.   ++.
T Consensus       438 sI~d~~Vv~-W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~  516 (712)
T KOG0283|consen  438 SISDKKVVD-WNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDE  516 (712)
T ss_pred             ecCcCeeEe-ehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCe
Confidence            998877664 333458899999999999999999999999999865432211111111      1256666654   456


Q ss_pred             EEEeecCCcEEEEEccCCcccccCC---C-CCeeEEEEeCCCCEEEEEecCCeEEEEECC
Q 023772          159 IIGGSVDGTVRTFDIRVGRELSDDL---G-QPVNCISMSNDGNCILASCLDSTLRLLDRS  214 (277)
Q Consensus       159 ~~~g~~d~~i~i~d~~~~~~~~~~~---~-~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~  214 (277)
                      +++.+.|..|||||.+....+....   . ..-....|+.+|++|+++++|..+++|+..
T Consensus       517 vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~  576 (712)
T KOG0283|consen  517 VLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND  576 (712)
T ss_pred             EEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence            8999999999999997655433221   1 223456899999999999999999999973

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=2.2e-26  Score=200.68  Aligned_cols=249  Identities=18%  Similarity=0.316  Sum_probs=190.2

Q ss_pred             eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCC------------------CeeEEEEeccCccEEEEEEcCCCCE
Q 023772           13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHR------------------GIHIKTYKSHGREVRDVHVTADNSK   74 (277)
Q Consensus        13 ~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~------------------~~~~~~~~~h~~~v~~~~~~~~~~~   74 (277)
                      +...|.+.|+|++|++||++||+||.|+.|-||....                  -+....+.+|...|..++|+|++.+
T Consensus        64 ~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~  143 (942)
T KOG0973|consen   64 TMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSL  143 (942)
T ss_pred             eeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccE
Confidence            3467999999999999999999999999999998552                  1367789999999999999999999


Q ss_pred             EEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEe--ecc--ccCcEE
Q 023772           75 LISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQI--IDS--FQDSVM  150 (277)
Q Consensus        75 l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~--~~~~~~  150 (277)
                      ++++|.|++|.+|+..+.++++.+.+|.+.|-.+.|.|-|++|++-+.|++|++|.......+....  +..  ......
T Consensus       144 lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~  223 (942)
T KOG0973|consen  144 LVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFL  223 (942)
T ss_pred             EEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceee
Confidence            9999999999999999999999999999999999999999999999999999999976543322211  010  011234


Q ss_pred             EEEecC--CeEEEee-cC---CcEEEEEccCCc--ccccCCCCCeeEEEEeCC------C-------C----EEEEEecC
Q 023772          151 SVCLTK--TEIIGGS-VD---GTVRTFDIRVGR--ELSDDLGQPVNCISMSND------G-------N----CILASCLD  205 (277)
Q Consensus       151 ~~~~~~--~~~~~g~-~d---~~i~i~d~~~~~--~~~~~~~~~v~~~~~s~~------~-------~----~l~~~~~d  205 (277)
                      .+.++|  ++++++. ..   -++.|.+=.+-.  .-...|..++.++.|+|.      .       +    .+++|+.|
T Consensus       224 RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqD  303 (942)
T KOG0973|consen  224 RLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQD  303 (942)
T ss_pred             ecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCC
Confidence            444544  4566542 12   245554432211  112345679999999881      1       1    57889999


Q ss_pred             CeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccc
Q 023772          206 STLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASV  262 (277)
Q Consensus       206 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~  262 (277)
                      ++|-+|.....+++-....-. ...+.+.+++|||..|..+|.||+|.+...++.++
T Consensus       304 rSlSVW~T~~~RPl~vi~~lf-~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El  359 (942)
T KOG0973|consen  304 RSLSVWNTALPRPLFVIHNLF-NKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL  359 (942)
T ss_pred             ccEEEEecCCCCchhhhhhhh-cCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence            999999997766654332211 22467889999999999999999999999988655

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=3e-25  Score=170.01  Aligned_cols=246  Identities=15%  Similarity=0.219  Sum_probs=190.6

Q ss_pred             cccceeeccCCcEEEEEEeCCCCEEEEEeC--CCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEE
Q 023772            9 TEANVLKGHEGAVLAARFNGDGNYCLSCGK--DRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFY   86 (277)
Q Consensus         9 ~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~--d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~   86 (277)
                      ....++..++-.|..++|-.....++.++.  |.+||.-++.+.+.++.|.+|...|++++.+|.++.++++|.|++|++
T Consensus        47 ~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrL  126 (311)
T KOG1446|consen   47 KQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRL  126 (311)
T ss_pred             ceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEe
Confidence            334556677788999999887777776666  999999999999999999999999999999999999999999999999


Q ss_pred             EECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccc---cCcEEEEEec--CCeEEE
Q 023772           87 WDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSF---QDSVMSVCLT--KTEIIG  161 (277)
Q Consensus        87 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~  161 (277)
                      ||++..++..-+.....++  ++|.|.|-++|.+.....|++||+|.....+...+.-.   ......+.++  ++.++.
T Consensus       127 WDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLl  204 (311)
T KOG1446|consen  127 WDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILL  204 (311)
T ss_pred             eEecCCCCceEEecCCCcc--eeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEE
Confidence            9999877765554433344  78999999999998888999999998777776665432   2334445554  556888


Q ss_pred             eecCCcEEEEEccCCcccccCC-----CCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEecc-ccceeeeeeE
Q 023772          162 GSVDGTVRTFDIRVGRELSDDL-----GQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGH-ICKSFKTDCC  235 (277)
Q Consensus       162 g~~d~~i~i~d~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~  235 (277)
                      ++..+.+.+.|--.|.......     +.-.-..+|+||++++++|+.||+|.+|++++++.+..+.+. ....  ...-
T Consensus       205 sT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~--~~~~  282 (311)
T KOG1446|consen  205 STNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPV--SCVR  282 (311)
T ss_pred             EeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCc--cccc
Confidence            8888999999987776433211     112246789999999999999999999999999999998874 3222  2233


Q ss_pred             ecCCCceEEeecCCCeEEEEECcCc
Q 023772          236 LTNSDAHVTGGSEDGYIYFWDLVDA  260 (277)
Q Consensus       236 ~~~~~~~l~sgs~d~~i~iwd~~~~  260 (277)
                      +.|....++++  +..+-+|=....
T Consensus       283 fnP~~~mf~sa--~s~l~fw~p~~~  305 (311)
T KOG1446|consen  283 FNPRYAMFVSA--SSNLVFWLPDED  305 (311)
T ss_pred             cCCceeeeeec--CceEEEEecccc
Confidence            67766566655  457888976644

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=5.1e-26  Score=190.83  Aligned_cols=261  Identities=19%  Similarity=0.295  Sum_probs=204.8

Q ss_pred             eeccCCcEEEEEEeC-----------CCCEEEEEeCCCcEEEEcCCCCeeEEEE--------------------------
Q 023772           14 LKGHEGAVLAARFNG-----------DGNYCLSCGKDRTIRLWNPHRGIHIKTY--------------------------   56 (277)
Q Consensus        14 l~~H~~~V~~~~~~~-----------~~~~l~s~s~d~~v~iwd~~~~~~~~~~--------------------------   56 (277)
                      .-.|...|..+.--|           -..-++|||.|++||+||+..+..-.++                          
T Consensus       365 ~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~  444 (1080)
T KOG1408|consen  365 MLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDAS  444 (1080)
T ss_pred             eeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhcc
Confidence            446777777665433           0224679999999999997653211110                          


Q ss_pred             -----------eccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecC---CCEEEEEeC
Q 023772           57 -----------KSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEY---SSVVVSAGY  122 (277)
Q Consensus        57 -----------~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~---~~~l~s~~~  122 (277)
                                 -.....+++++++|++++|++|..-|.++++|+...+....+..|.++|.++.|+.-   .++|++++.
T Consensus       445 ~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasr  524 (1080)
T KOG1408|consen  445 AGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASR  524 (1080)
T ss_pred             CCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccC
Confidence                       012346899999999999999999999999999998888889999999999999742   568999999


Q ss_pred             CCcEEEEeCccCCCcceEeeccccCcEEEEEecCC----eEEEeecCCcEEEEEccC----CcccccC----CCCCeeEE
Q 023772          123 DQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT----EIIGGSVDGTVRTFDIRV----GRELSDD----LGQPVNCI  190 (277)
Q Consensus       123 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~~d~~i~i~d~~~----~~~~~~~----~~~~v~~~  190 (277)
                      |+-|.+||... +....+.+..|...++++.+...    .+++++.|+.|.+ +...    +..+...    ....+..|
T Consensus       525 dRlIHV~Dv~r-ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~~g~~f~r~t~t~~ktTlYDm  602 (1080)
T KOG1408|consen  525 DRLIHVYDVKR-NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKASSGRLFPRHTQTLSKTTLYDM  602 (1080)
T ss_pred             CceEEEEeccc-ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhccccCceeccccccccccceEEEe
Confidence            99999999864 34567788889999999988643    3888999988764 3221    2222222    23468899


Q ss_pred             EEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccc-eeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccC
Q 023772          191 SMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICK-SFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAH  269 (277)
Q Consensus       191 ~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h  269 (277)
                      ++.|..+++++++.|+.|+|||.+++++.+.|++.... ....-..+.|.|.|+++...|.++.++|..+|+++.+..||
T Consensus       603 ~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GH  682 (1080)
T KOG1408|consen  603 AVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGH  682 (1080)
T ss_pred             eeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCc
Confidence            99999999999999999999999999999999874322 22334456788999999999999999999999999999999


Q ss_pred             cceeEee
Q 023772          270 SLVVKLL  276 (277)
Q Consensus       270 ~~~v~~~  276 (277)
                      +++|+-+
T Consensus       683 sE~VTG~  689 (1080)
T KOG1408|consen  683 SEAVTGV  689 (1080)
T ss_pred             chheeee
Confidence            9998754

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=7.6e-27  Score=193.63  Aligned_cols=205  Identities=21%  Similarity=0.373  Sum_probs=170.4

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCC--c----eeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeec
Q 023772           70 ADNSKLISCGGDRQIFYWDVSTG--R----VIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIID  143 (277)
Q Consensus        70 ~~~~~l~t~s~d~~v~~wd~~~~--~----~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  143 (277)
                      |.+++|+|||.||.|++|+....  +    .+.+++.|...|+.+....+++.++++|.|.+|++|+..........++.
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir  114 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR  114 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence            45667999999999999998642  1    36778899999999999999999999999999999998765323444567


Q ss_pred             cccCcEEEEEe-c--CCeEEEeecCCcEEEEEccCCcc--cc-----------cCCCCCeeEEEEeCCCCEEEEEecCCe
Q 023772          144 SFQDSVMSVCL-T--KTEIIGGSVDGTVRTFDIRVGRE--LS-----------DDLGQPVNCISMSNDGNCILASCLDST  207 (277)
Q Consensus       144 ~~~~~~~~~~~-~--~~~~~~g~~d~~i~i~d~~~~~~--~~-----------~~~~~~v~~~~~s~~~~~l~~~~~d~~  207 (277)
                      .|.+.|.+++. .  ...+++|+.|+.|.+||+..+..  +.           .....++.+++.++.|..|++|+..+-
T Consensus       115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~  194 (735)
T KOG0308|consen  115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD  194 (735)
T ss_pred             cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc
Confidence            78888877776 3  34488999999999999997732  10           122357999999999999999999999


Q ss_pred             EEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772          208 LRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL  276 (277)
Q Consensus       208 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  276 (277)
                      |++||.++++.+..+.||...+  .....++||..+.++|+||+|++||+...+++.++..|...|=.|
T Consensus       195 lr~wDprt~~kimkLrGHTdNV--r~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL  261 (735)
T KOG0308|consen  195 LRLWDPRTCKKIMKLRGHTDNV--RVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWAL  261 (735)
T ss_pred             eEEeccccccceeeeeccccce--EEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEE
Confidence            9999999999999999997554  334578999999999999999999999999999999998876443

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=3.1e-25  Score=184.11  Aligned_cols=245  Identities=18%  Similarity=0.260  Sum_probs=198.8

Q ss_pred             EEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeec-cc
Q 023772           24 ARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRG-HE  102 (277)
Q Consensus        24 ~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~-h~  102 (277)
                      +.|+ ..+.|+.| .+..|.+|+..++........+...|+++.|+++|.+|+.|-.+|.|.+||.++.+.++++.. |.
T Consensus       183 ldWs-s~n~laVa-lg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~  260 (484)
T KOG0305|consen  183 LDWS-SANVLAVA-LGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHA  260 (484)
T ss_pred             hhcc-cCCeEEEE-ecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcC
Confidence            5566 33455554 457999999999887666666688999999999999999999999999999999999999998 99


Q ss_pred             CceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec--CCeEEEeecCCcEEEEEccCCcccc
Q 023772          103 SEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT--KTEIIGGSVDGTVRTFDIRVGRELS  180 (277)
Q Consensus       103 ~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~d~~i~i~d~~~~~~~~  180 (277)
                      ..|-+++|+  ...+.+|+.|+.|..+|++....... .+..|...+..+.++  ..++++|+.|+.+.|||....+...
T Consensus       261 ~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~-~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~  337 (484)
T KOG0305|consen  261 SRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS-TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKF  337 (484)
T ss_pred             ceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh-hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccE
Confidence            999999999  67999999999999999987543222 356677777777665  4569999999999999995544332


Q ss_pred             --cCCCCCeeEEEEeCC-CCEEEEE--ecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEe--ecCCCeEE
Q 023772          181 --DDLGQPVNCISMSND-GNCILAS--CLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTG--GSEDGYIY  253 (277)
Q Consensus       181 --~~~~~~v~~~~~s~~-~~~l~~~--~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s--gs~d~~i~  253 (277)
                        ..+...|..++|+|- ...||+|  +.|+.|++||..+++.+......   .++....+++..+-+++  |..++.|.
T Consensus       338 ~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg---sQVcsL~Wsk~~kEi~sthG~s~n~i~  414 (484)
T KOG0305|consen  338 TFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG---SQVCSLIWSKKYKELLSTHGYSENQIT  414 (484)
T ss_pred             EEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC---CceeeEEEcCCCCEEEEecCCCCCcEE
Confidence              356679999999994 5667775  47999999999999998876533   35666778887755444  67888999


Q ss_pred             EEECcCccceeeeccCcceeEee
Q 023772          254 FWDLVDASVVAKFKAHSLVVKLL  276 (277)
Q Consensus       254 iwd~~~~~~~~~~~~h~~~v~~~  276 (277)
                      ||+..+.+.+..+.+|+..|..|
T Consensus       415 lw~~ps~~~~~~l~gH~~RVl~l  437 (484)
T KOG0305|consen  415 LWKYPSMKLVAELLGHTSRVLYL  437 (484)
T ss_pred             EEeccccceeeeecCCcceeEEE
Confidence            99999999999999999988765

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=1.7e-25  Score=195.19  Aligned_cols=245  Identities=22%  Similarity=0.327  Sum_probs=196.8

Q ss_pred             ccCCcEEEEEEeCCCCEEEEEe--CCCcEEEEcCCC------------CeeEEEEeccCccEEEEEEcCCCCEEEEEeCC
Q 023772           16 GHEGAVLAARFNGDGNYCLSCG--KDRTIRLWNPHR------------GIHIKTYKSHGREVRDVHVTADNSKLISCGGD   81 (277)
Q Consensus        16 ~H~~~V~~~~~~~~~~~l~s~s--~d~~v~iwd~~~------------~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d   81 (277)
                      .++..|.++..+|+|..++|||  .|+.++||+...            .+.+.+...|.+.|+|+.|+++|++|++||.|
T Consensus        11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD   90 (942)
T KOG0973|consen   11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD   90 (942)
T ss_pred             cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence            3456789999999999999999  999999998532            23456677899999999999999999999999


Q ss_pred             CcEEEEECCC------------------CceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeec
Q 023772           82 RQIFYWDVST------------------GRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIID  143 (277)
Q Consensus        82 ~~v~~wd~~~------------------~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  143 (277)
                      +.|.+|+...                  .+++..+.+|.+.|..+.|+|++.++++++.|++|.+|+.++.  +.+..+.
T Consensus        91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF--~~~~vl~  168 (942)
T KOG0973|consen   91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF--ELLKVLR  168 (942)
T ss_pred             ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc--eeeeeee
Confidence            9999999762                  1356788999999999999999999999999999999999886  6677888


Q ss_pred             cccCcEEEEEecC--CeEEEeecCCcEEEEEccCCc---ccccCC-----CCCeeEEEEeCCCCEEEEEe----cCCeEE
Q 023772          144 SFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVGR---ELSDDL-----GQPVNCISMSNDGNCILASC----LDSTLR  209 (277)
Q Consensus       144 ~~~~~~~~~~~~~--~~~~~g~~d~~i~i~d~~~~~---~~~~~~-----~~~v~~~~~s~~~~~l~~~~----~d~~i~  209 (277)
                      .|+..|..+.++|  .++++-+.|++|++|+...-.   .+....     .....-+.|||||.+|++..    .-.++.
T Consensus       169 ~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~  248 (942)
T KOG0973|consen  169 GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIA  248 (942)
T ss_pred             cccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeE
Confidence            9999998888876  569999999999999965421   122221     23577899999999998863    344788


Q ss_pred             EEECCCCceEEEEeccccceeeeeeEecC------C-------C----ceEEeecCCCeEEEEECcCcccee
Q 023772          210 LLDRSTGELLQEYKGHICKSFKTDCCLTN------S-------D----AHVTGGSEDGYIYFWDLVDASVVA  264 (277)
Q Consensus       210 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~------~-------~----~~l~sgs~d~~i~iwd~~~~~~~~  264 (277)
                      |.+..+-+.-..+-||......  ..|+|      .       .    ..+|+||.|++|-||.....+++-
T Consensus       249 IieR~tWk~~~~LvGH~~p~ev--vrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~  318 (942)
T KOG0973|consen  249 IIERGTWKVDKDLVGHSAPVEV--VRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF  318 (942)
T ss_pred             EEecCCceeeeeeecCCCceEE--EEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence            9999887777888888664332  23432      1       1    268899999999999987766653

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.95  E-value=4.2e-25  Score=165.59  Aligned_cols=210  Identities=19%  Similarity=0.284  Sum_probs=171.3

Q ss_pred             EEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccC
Q 023772           55 TYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSH  134 (277)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~  134 (277)
                      .+++|..+++.+.++.+|.+|++++.|.+..+|-..+|+++.++.+|++.|++++.+.+.+.++||+.|.++++||+.++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             CCcceEeeccccCcEEEEEecC--CeEEEe-----ecCCcEEEEEccCCc-------cccc--CCCCCeeEEEEeCCCCE
Q 023772          135 STEPIQIIDSFQDSVMSVCLTK--TEIIGG-----SVDGTVRTFDIRVGR-------ELSD--DLGQPVNCISMSNDGNC  198 (277)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~g-----~~d~~i~i~d~~~~~-------~~~~--~~~~~v~~~~~s~~~~~  198 (277)
                      ..  +... ..+.++..+.++.  +.++..     +..+.|.++|++...       ++..  .....++.+-|+|-+.+
T Consensus        85 k~--la~~-k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~  161 (327)
T KOG0643|consen   85 KQ--LATW-KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGET  161 (327)
T ss_pred             cE--EEEe-ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCE
Confidence            43  2222 2345566666654  443332     234568899998432       1111  22467889999999999


Q ss_pred             EEEEecCCeEEEEECCCCc-eEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccC
Q 023772          199 ILASCLDSTLRLLDRSTGE-LLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAH  269 (277)
Q Consensus       199 l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h  269 (277)
                      |++|.+||.|.+||.++|+ .+..-..|..  .+.+..++++..++++||.|.+-++||..+.++++++...
T Consensus       162 ii~Ghe~G~is~~da~~g~~~v~s~~~h~~--~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te  231 (327)
T KOG0643|consen  162 IIAGHEDGSISIYDARTGKELVDSDEEHSS--KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE  231 (327)
T ss_pred             EEEecCCCcEEEEEcccCceeeechhhhcc--ccccccccCCcceEEecccCccceeeeccceeeEEEeeec
Confidence            9999999999999999974 4455455543  5677889999999999999999999999999999998754

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.1e-24  Score=187.10  Aligned_cols=241  Identities=15%  Similarity=0.294  Sum_probs=198.1

Q ss_pred             eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC-eeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 023772           15 KGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG-IHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGR   93 (277)
Q Consensus        15 ~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~   93 (277)
                      -+|.++-+.++|.++|+.|++|+.||.||+|+.... +...++.-+...|.+++..  +.+|++|+.+++|.+|...+++
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~   87 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE   87 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence            379999999999999999999999999999986554 3344444477788888775  4489999999999999988776


Q ss_pred             eeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCe--EEEeecCCcEEEE
Q 023772           94 VIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE--IIGGSVDGTVRTF  171 (277)
Q Consensus        94 ~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~d~~i~i~  171 (277)
                      .-.-+...+-+++.++++.+|++++.||.|-.|++-+.....  ....+.+|..++..+.++++.  |++.+.||.+++|
T Consensus        88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s--~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw  165 (933)
T KOG1274|consen   88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS--QEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW  165 (933)
T ss_pred             ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccc--hheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence            544444456789999999999999999999999999876543  345577889999999988765  8899999999999


Q ss_pred             EccCCcccccC----------CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCc
Q 023772          172 DIRVGRELSDD----------LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDA  241 (277)
Q Consensus       172 d~~~~~~~~~~----------~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (277)
                      |+..+......          ....+..++|+|+|..++..+.|+.|++|+.........+...........+.|+|+|.
T Consensus       166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~  245 (933)
T KOG1274|consen  166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGK  245 (933)
T ss_pred             EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCc
Confidence            99876543211          12345678999998888999999999999999988888887654444467788999999


Q ss_pred             eEEeecCCCeEEEEECcC
Q 023772          242 HVTGGSEDGYIYFWDLVD  259 (277)
Q Consensus       242 ~l~sgs~d~~i~iwd~~~  259 (277)
                      |||+++.||.|-|||+++
T Consensus       246 YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  246 YIAASTLDGQILVWNVDT  263 (933)
T ss_pred             EEeeeccCCcEEEEeccc
Confidence            999999999999999995

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=4.2e-25  Score=168.15  Aligned_cols=228  Identities=18%  Similarity=0.278  Sum_probs=179.0

Q ss_pred             eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCC--EEEEEeCCCcEEEEECC
Q 023772           13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNS--KLISCGGDRQIFYWDVS   90 (277)
Q Consensus        13 ~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~d~~v~~wd~~   90 (277)
                      ....|.+||++++|+.||..+++|+.|+.+++||+.++ ....+..|.++|..++|.+...  .|+|||+|+++|.||+.
T Consensus        67 a~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R  145 (347)
T KOG0647|consen   67 AQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTR  145 (347)
T ss_pred             hhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccC
Confidence            34579999999999999999999999999999999998 5778889999999999987665  79999999999999999


Q ss_pred             CCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcce--EeeccccCcEEEEEecCCeEEEeecCCcE
Q 023772           91 TGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPI--QIIDSFQDSVMSVCLTKTEIIGGSVDGTV  168 (277)
Q Consensus        91 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~d~~i  168 (277)
                      ...++.++. -..++.+++..  ..+++.+..++.|.+|+++++..+..  ..--.++..+.++..+.+..+.|+.+|.+
T Consensus       146 ~~~pv~t~~-LPeRvYa~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv  222 (347)
T KOG0647|consen  146 SSNPVATLQ-LPERVYAADVL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRV  222 (347)
T ss_pred             CCCeeeeee-ccceeeehhcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceE
Confidence            988887776 45667666654  34777788899999999976533211  11123445566666677778999999999


Q ss_pred             EEEEccCCcc-----c---cc---CC--CCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeE
Q 023772          169 RTFDIRVGRE-----L---SD---DL--GQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCC  235 (277)
Q Consensus       169 ~i~d~~~~~~-----~---~~---~~--~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  235 (277)
                      .+..+..+..     +   +.   ..  -.+|++++|+|....|++++.||++.+||-.....++++..|.  ..+..|+
T Consensus       223 ~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~--qpItcc~  300 (347)
T KOG0647|consen  223 AIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHP--QPITCCS  300 (347)
T ss_pred             EEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCC--CccceeE
Confidence            9887765311     1   11   01  1368899999998999999999999999998877777776663  4457788


Q ss_pred             ecCCCceEEee
Q 023772          236 LTNSDAHVTGG  246 (277)
Q Consensus       236 ~~~~~~~l~sg  246 (277)
                      |+.+|.++|-+
T Consensus       301 fn~~G~ifaYA  311 (347)
T KOG0647|consen  301 FNRNGSIFAYA  311 (347)
T ss_pred             ecCCCCEEEEE
Confidence            88888887754

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=3.5e-26  Score=186.94  Aligned_cols=255  Identities=21%  Similarity=0.291  Sum_probs=196.2

Q ss_pred             ceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCC--------CeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCc
Q 023772           12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHR--------GIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQ   83 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~--------~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~   83 (277)
                      ..++.|...|+.+.|.+....|++|+.|+++++|+++.        -+++.+|++|.++|.|+++.++++.+++|+.||+
T Consensus       288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~  367 (577)
T KOG0642|consen  288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT  367 (577)
T ss_pred             eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence            36788999999999999999999999999999999832        2568899999999999999999999999999999


Q ss_pred             EEEEECCCC----------ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeecc--ccCcEEE
Q 023772           84 IFYWDVSTG----------RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDS--FQDSVMS  151 (277)
Q Consensus        84 v~~wd~~~~----------~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~  151 (277)
                      |+.|++...          .....+.+|+..|+.+++++....|++++.||+++.|+.....+   .++..  ......+
T Consensus       368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~---~~f~~~~e~g~Pls  444 (577)
T KOG0642|consen  368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP---CTFGEPKEHGYPLS  444 (577)
T ss_pred             eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc---cccCCccccCCcce
Confidence            999965321          23456889999999999999999999999999999999765433   11111  1112233


Q ss_pred             EEecCCe---EEEeecCCcEEEEEccCCcccccC---------CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceE
Q 023772          152 VCLTKTE---IIGGSVDGTVRTFDIRVGRELSDD---------LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELL  219 (277)
Q Consensus       152 ~~~~~~~---~~~g~~d~~i~i~d~~~~~~~~~~---------~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~  219 (277)
                      +.+....   .++...-+.-.++|+.....+...         ....++-+..+|.+...+++..|+.|+++|..+++++
T Consensus       445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l  524 (577)
T KOG0642|consen  445 VDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKIL  524 (577)
T ss_pred             EeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccc
Confidence            3333322   222222233333444433322111         1134677888999999999999999999999999999


Q ss_pred             EEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCcc
Q 023772          220 QEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSL  271 (277)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~  271 (277)
                      .....|.  ......++-|+|.+|++|+.|+.+++|.+....++....+|..
T Consensus       525 ~s~~a~~--~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r~  574 (577)
T KOG0642|consen  525 HSMVAHK--DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHRK  574 (577)
T ss_pred             hheeecc--ceecceeecCCCceEEeecCCceeehhhccchheeeccccccc
Confidence            8888774  3445567889999999999999999999999999988888865

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=3.3e-24  Score=163.73  Aligned_cols=252  Identities=17%  Similarity=0.275  Sum_probs=183.5

Q ss_pred             eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCC----CeeEEEEeccCccEEEEEEcC--CCCEEEEEeCCCcEEEE
Q 023772           14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHR----GIHIKTYKSHGREVRDVHVTA--DNSKLISCGGDRQIFYW   87 (277)
Q Consensus        14 l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~----~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~s~d~~v~~w   87 (277)
                      ..+|.+-|.++.|++-|+.++|||.|++++|||...    -.+....+.|.+.|..+.|.+  =|+.+++++.|+++++|
T Consensus         9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW   88 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW   88 (361)
T ss_pred             ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence            368999999999999999999999999999999543    246677889999999999965  36889999999999999


Q ss_pred             ECCC---------CceeEEeecccCceeEEEEecC--CCEEEEEeCCCcEEEEeCccCCCc-------ceEe----eccc
Q 023772           88 DVST---------GRVIRKFRGHESEVNAVKFNEY--SSVVVSAGYDQSLRAWDCRSHSTE-------PIQI----IDSF  145 (277)
Q Consensus        88 d~~~---------~~~~~~~~~h~~~v~~i~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~-------~~~~----~~~~  145 (277)
                      .-..         .....++...++.|.++.|.|.  |-.+++++.||.++||+.......       .++.    ...+
T Consensus        89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~  168 (361)
T KOG2445|consen   89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN  168 (361)
T ss_pred             eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence            8621         1245667788899999999986  678999999999999986532110       0110    0112


Q ss_pred             cCcEEEEEecC-----CeEEEeecC-----CcEEEEEccCCc-ccc-----cCCCCCeeEEEEeCCC----CEEEEEecC
Q 023772          146 QDSVMSVCLTK-----TEIIGGSVD-----GTVRTFDIRVGR-ELS-----DDLGQPVNCISMSNDG----NCILASCLD  205 (277)
Q Consensus       146 ~~~~~~~~~~~-----~~~~~g~~d-----~~i~i~d~~~~~-~~~-----~~~~~~v~~~~~s~~~----~~l~~~~~d  205 (277)
                      ..+..++.+++     ..++.|+.+     +.+.||...... ...     ..+..+|+.++|.|.-    ..|++++.|
T Consensus       169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD  248 (361)
T KOG2445|consen  169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD  248 (361)
T ss_pred             cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence            23344555543     336777665     478888765432 221     1456799999999963    468999999


Q ss_pred             CeEEEEECCCC--------------------ceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcC---ccc
Q 023772          206 STLRLLDRSTG--------------------ELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVD---ASV  262 (277)
Q Consensus       206 ~~i~~wd~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~---~~~  262 (277)
                      | |+||.++..                    +.+..|.+|.+.+..  +.+.--|..|++.+.||+||+|...=   .++
T Consensus       249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWr--v~wNmtGtiLsStGdDG~VRLWkany~n~~kC  325 (361)
T KOG2445|consen  249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWR--VRWNMTGTILSSTGDDGCVRLWKANYNNLWKC  325 (361)
T ss_pred             c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEE--EEEeeeeeEEeecCCCceeeehhhhhhhhhee
Confidence            9 999998631                    235567778766544  45566788999999999999997432   344


Q ss_pred             eeeecc
Q 023772          263 VAKFKA  268 (277)
Q Consensus       263 ~~~~~~  268 (277)
                      ...+++
T Consensus       326 ~sv~~~  331 (361)
T KOG2445|consen  326 TSVLKA  331 (361)
T ss_pred             eeEEec
Confidence            444443

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=4.8e-25  Score=168.24  Aligned_cols=238  Identities=17%  Similarity=0.240  Sum_probs=179.4

Q ss_pred             cCCccccccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCC
Q 023772            3 VSDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDR   82 (277)
Q Consensus         3 ~~~~~~~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~   82 (277)
                      +++.|..+....-.|.+|+++++|.++ ..+++|+-||.||.+|+.++.. ..+..|..+|+++...+....+++||+|+
T Consensus        39 lYdv~~~~l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~-~~igth~~~i~ci~~~~~~~~vIsgsWD~  116 (323)
T KOG1036|consen   39 LYDVPANSLKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNE-DQIGTHDEGIRCIEYSYEVGCVISGSWDK  116 (323)
T ss_pred             EEeccchhhhhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcc-eeeccCCCceEEEEeeccCCeEEEcccCc
Confidence            456666666666679999999999985 5778999999999999988754 45667999999999999889999999999


Q ss_pred             cEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeecc---ccCcEEEEEecCCeE
Q 023772           83 QIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDS---FQDSVMSVCLTKTEI  159 (277)
Q Consensus        83 ~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  159 (277)
                      +|++||.....++.++.. ...|.+++..  ++.|+.|..|..+.+||++.... +.+....   .+-...++-+++..+
T Consensus       117 ~ik~wD~R~~~~~~~~d~-~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~-~~q~reS~lkyqtR~v~~~pn~eGy  192 (323)
T KOG1036|consen  117 TIKFWDPRNKVVVGTFDQ-GKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDE-PFQRRESSLKYQTRCVALVPNGEGY  192 (323)
T ss_pred             cEEEEecccccccccccc-CceEEEEecc--CCEEEEeecCceEEEEEcccccc-hhhhccccceeEEEEEEEecCCCce
Confidence            999999987666655553 3478777765  66888899999999999987532 2222111   122233333455779


Q ss_pred             EEeecCCcEEEEEccCCccc----------ccC-----CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEec
Q 023772          160 IGGSVDGTVRTFDIRVGREL----------SDD-----LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKG  224 (277)
Q Consensus       160 ~~g~~d~~i~i~d~~~~~~~----------~~~-----~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~  224 (277)
                      +.++.||.+.+=.+...++.          ...     ...||++++|+|-.+.|+||+.||.|-+||+.+.+.+..|..
T Consensus       193 ~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~  272 (323)
T KOG1036|consen  193 VVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK  272 (323)
T ss_pred             EEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccC
Confidence            99999999887554433111          011     124899999999988999999999999999999888877755


Q ss_pred             cccceeeeeeEecCCCceEEeecC
Q 023772          225 HICKSFKTDCCLTNSDAHVTGGSE  248 (277)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~l~sgs~  248 (277)
                      -.  .-+...+|+.+|..||.|++
T Consensus       273 ~~--~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  273 YE--TSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             CC--CceEEEEeccCCCeEEEEec
Confidence            42  22445678899999998864

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=8.6e-26  Score=173.37  Aligned_cols=217  Identities=19%  Similarity=0.357  Sum_probs=173.2

Q ss_pred             eeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEe
Q 023772           51 IHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWD  130 (277)
Q Consensus        51 ~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd  130 (277)
                      ...+.+.+|...|+.++.......+.++|.|.+.++|.++++.|+.+|.+|.+.|+++.|++.+.++++++.|++-.||.
T Consensus       139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~  218 (481)
T KOG0300|consen  139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK  218 (481)
T ss_pred             eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence            45677899999999999988888999999999999999999999999999999999999999999999999999999997


Q ss_pred             C------ccCC--------------------------------CcceEeeccccCcEEEEEe--cCCeEEEeecCCcEEE
Q 023772          131 C------RSHS--------------------------------TEPIQIIDSFQDSVMSVCL--TKTEIIGGSVDGTVRT  170 (277)
Q Consensus       131 ~------~~~~--------------------------------~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~d~~i~i  170 (277)
                      .      ..+.                                ..++..+.+|...+.++.+  .++++++++.|++..+
T Consensus       219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnl  298 (481)
T KOG0300|consen  219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANL  298 (481)
T ss_pred             HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccccee
Confidence            2      1100                                0122334455666665554  3567999999999999


Q ss_pred             EEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCC-ceEEEEeccccceeeeeeEecCCCceEEeec
Q 023772          171 FDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTG-ELLQEYKGHICKSFKTDCCLTNSDAHVTGGS  247 (277)
Q Consensus       171 ~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs  247 (277)
                      ||+++++.+..  .+.+..+.++-+|..+.+++++.|.+.|+||++.. ..+..|.||...  .++..|..+ ..+++||
T Consensus       299 wDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdt--VTS~vF~~d-d~vVSgS  375 (481)
T KOG0300|consen  299 WDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDT--VTSVVFNTD-DRVVSGS  375 (481)
T ss_pred             eeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccc--eeEEEEecC-CceeecC
Confidence            99999986543  45667888889999999999999999999999743 446789999754  345556554 4588999


Q ss_pred             CCCeEEEEECcCc-cceeeeccCc
Q 023772          248 EDGYIYFWDLVDA-SVVAKFKAHS  270 (277)
Q Consensus       248 ~d~~i~iwd~~~~-~~~~~~~~h~  270 (277)
                      .|.+|++||+++. ..+.++...+
T Consensus       376 DDrTvKvWdLrNMRsplATIRtdS  399 (481)
T KOG0300|consen  376 DDRTVKVWDLRNMRSPLATIRTDS  399 (481)
T ss_pred             CCceEEEeeeccccCcceeeecCC
Confidence            9999999999884 3344444333

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=2.4e-24  Score=161.01  Aligned_cols=231  Identities=18%  Similarity=0.254  Sum_probs=191.2

Q ss_pred             ceeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772           12 NVLKGHEGAVLAARFNG-DGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~   90 (277)
                      ...+||.+.|..++|+| ..+++++++.|.++|+||...+++......- +.-..+.|+|++++++.++.|..|...|..
T Consensus        58 ~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~-~eni~i~wsp~g~~~~~~~kdD~it~id~r  136 (313)
T KOG1407|consen   58 LVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETK-GENINITWSPDGEYIAVGNKDDRITFIDAR  136 (313)
T ss_pred             hcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeecc-CcceEEEEcCCCCEEEEecCcccEEEEEec
Confidence            34679999999999998 4578999999999999999999998888754 445568899999999999999999999998


Q ss_pred             CCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEeecCCcE
Q 023772           91 TGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTV  168 (277)
Q Consensus        91 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~d~~i  168 (277)
                      +-+.+...+ ....++-+.|+.++.+++.....|+|.|-...  ..++++.+..|+..++++.++|  .++++|+.|-.+
T Consensus       137 ~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp--sLkpv~si~AH~snCicI~f~p~GryfA~GsADAlv  213 (313)
T KOG1407|consen  137 TYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSYP--SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALV  213 (313)
T ss_pred             ccceeehhc-ccceeeeeeecCCCCEEEEecCCceEEEEecc--ccccccccccCCcceEEEEECCCCceEeecccccee
Confidence            877766554 45677789999888888888888999998764  5678888999999999888876  569999999999


Q ss_pred             EEEEccCCcc--cccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEee
Q 023772          169 RTFDIRVGRE--LSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGG  246 (277)
Q Consensus       169 ~i~d~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg  246 (277)
                      .+||+..--+  ....+.-+|+.++||.+|++|++||+|..|-|=++++|..+.++.-.   .....+++.|...+||-+
T Consensus       214 SLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~---~~t~tVAWHPk~~LLAyA  290 (313)
T KOG1407|consen  214 SLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCE---GPTFTVAWHPKRPLLAYA  290 (313)
T ss_pred             eccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeecc---CCceeEEecCCCceeeEE
Confidence            9999875432  23456789999999999999999999999999999999988877532   223445788988888866


Q ss_pred             cCC
Q 023772          247 SED  249 (277)
Q Consensus       247 s~d  249 (277)
                      ..|
T Consensus       291 ~dd  293 (313)
T KOG1407|consen  291 CDD  293 (313)
T ss_pred             ecC
Confidence            543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.94  E-value=2.7e-23  Score=169.25  Aligned_cols=254  Identities=13%  Similarity=0.121  Sum_probs=180.1

Q ss_pred             ceeeccCCcEEEEEEeCCCCEE-EEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEE-eCCCcEEEEEC
Q 023772           12 NVLKGHEGAVLAARFNGDGNYC-LSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISC-GGDRQIFYWDV   89 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~~~~~l-~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~-s~d~~v~~wd~   89 (277)
                      ..+.+|.. +.+++|+|+++.+ ++++.|+.+++||..+++....+..+. .+..++++|+++.++++ +.|+.+++||+
T Consensus        25 ~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~  102 (300)
T TIGR03866        25 RTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDI  102 (300)
T ss_pred             EEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEEC
Confidence            34455544 6789999999877 567889999999999988877776554 35778999999877654 56899999999


Q ss_pred             CCCceeEEeecccCceeEEEEecCCCEEEEEeCCC-cEEEEeCccCCCcceEeeccccCcEEEEEecCCeEE-EeecCCc
Q 023772           90 STGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQ-SLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEII-GGSVDGT  167 (277)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~d~~  167 (277)
                      .+++.+..+.. ...+.++.++|+++++++++.++ .+..||..+...... ...........+..++..++ ++..++.
T Consensus       103 ~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~  180 (300)
T TIGR03866       103 ETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDN-VLVDQRPRFAEFTADGKELWVSSEIGGT  180 (300)
T ss_pred             CCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEE-EEcCCCccEEEECCCCCEEEEEcCCCCE
Confidence            98887777653 34467899999999999988775 466778765432111 11111112223334445564 4456899


Q ss_pred             EEEEEccCCcccccC-------C--CCCeeEEEEeCCCCEEEE-EecCCeEEEEECCCCceEEEEeccccceeeeeeEec
Q 023772          168 VRTFDIRVGRELSDD-------L--GQPVNCISMSNDGNCILA-SCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLT  237 (277)
Q Consensus       168 i~i~d~~~~~~~~~~-------~--~~~v~~~~~s~~~~~l~~-~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  237 (277)
                      +++||+++++.+...       .  ......++|+|++++++. .+.++.+.+||.++++.+..+....   .....+++
T Consensus       181 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~~  257 (300)
T TIGR03866       181 VSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQ---RVWQLAFT  257 (300)
T ss_pred             EEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCC---CcceEEEC
Confidence            999999887543221       0  112346889999998554 4556789999999888776543221   23456789


Q ss_pred             CCCceEEee-cCCCeEEEEECcCccceeeeccCcce
Q 023772          238 NSDAHVTGG-SEDGYIYFWDLVDASVVAKFKAHSLV  272 (277)
Q Consensus       238 ~~~~~l~sg-s~d~~i~iwd~~~~~~~~~~~~h~~~  272 (277)
                      |++.+|+++ ..++.|++||+.+++++.+++.+..+
T Consensus       258 ~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~  293 (300)
T TIGR03866       258 PDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLP  293 (300)
T ss_pred             CCCCEEEEEcCCCCeEEEEECCCCcEEEEEEccccc
Confidence            999998876 56999999999999999998865443

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2.8e-25  Score=177.91  Aligned_cols=204  Identities=17%  Similarity=0.292  Sum_probs=169.4

Q ss_pred             cCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC------
Q 023772           17 HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS------   90 (277)
Q Consensus        17 H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~------   90 (277)
                      -.++|.+++-+|+|.+|+.|...|.+.+|.+.+|..+..+.+|-.+|+++.|+.|+.+|+|||.||.|.+|++.      
T Consensus        80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~  159 (476)
T KOG0646|consen   80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD  159 (476)
T ss_pred             cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence            35789999999999999999899999999999999999999999999999999999999999999999999873      


Q ss_pred             ---CCceeEEeecccCceeEEEEecC--CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEee
Q 023772           91 ---TGRVIRKFRGHESEVNAVKFNEY--SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGS  163 (277)
Q Consensus        91 ---~~~~~~~~~~h~~~v~~i~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~  163 (277)
                         +-++.+.|..|+-+|+++...+.  ..+++|+|.|.++++||+.....-..   -..+..+.++..+|  ..+..|+
T Consensus       160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlt---i~fp~si~av~lDpae~~~yiGt  236 (476)
T KOG0646|consen  160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLT---ITFPSSIKAVALDPAERVVYIGT  236 (476)
T ss_pred             cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEE---EecCCcceeEEEcccccEEEecC
Confidence               23567889999999999998765  46899999999999999976533211   22345566666665  5589999


Q ss_pred             cCCcEEEEEccCCc--c--------------c--ccCCC--CCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEe
Q 023772          164 VDGTVRTFDIRVGR--E--------------L--SDDLG--QPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYK  223 (277)
Q Consensus       164 ~d~~i~i~d~~~~~--~--------------~--~~~~~--~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~  223 (277)
                      .+|.|.+.++..-.  .              +  ...+.  .+|+|++++.||+.|++|+.||.+++||..+.++++++.
T Consensus       237 ~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~  316 (476)
T KOG0646|consen  237 EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ  316 (476)
T ss_pred             CcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence            99999988764322  0              0  11122  389999999999999999999999999999988887665

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=2.7e-25  Score=164.67  Aligned_cols=207  Identities=22%  Similarity=0.282  Sum_probs=167.2

Q ss_pred             ccccceeeccCCcEEEEEEeC--CCCEEEEEeCCCcEEEEcCCCCee--EEEEeccCccEEEEEEcCC--CCEEEEEeCC
Q 023772            8 RTEANVLKGHEGAVLAARFNG--DGNYCLSCGKDRTIRLWNPHRGIH--IKTYKSHGREVRDVHVTAD--NSKLISCGGD   81 (277)
Q Consensus         8 ~~~~~~l~~H~~~V~~~~~~~--~~~~l~s~s~d~~v~iwd~~~~~~--~~~~~~h~~~v~~~~~~~~--~~~l~t~s~d   81 (277)
                      .+....|+||++||..++|..  -|.+|+||+.||.|.||.-..|+-  ...+..|+..|++++|.|.  +-.|+.++.|
T Consensus        46 s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSD  125 (299)
T KOG1332|consen   46 SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSD  125 (299)
T ss_pred             ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCC
Confidence            355677999999999999987  799999999999999999887753  3456779999999999985  4578899999


Q ss_pred             CcEEEEECCCC---ceeEEeecccCceeEEEEecC---C-----------CEEEEEeCCCcEEEEeCccCCCcceEeecc
Q 023772           82 RQIFYWDVSTG---RVIRKFRGHESEVNAVKFNEY---S-----------SVVVSAGYDQSLRAWDCRSHSTEPIQIIDS  144 (277)
Q Consensus        82 ~~v~~wd~~~~---~~~~~~~~h~~~v~~i~~~~~---~-----------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  144 (277)
                      |.|.+.+.++.   ...+....|+-.|+++.+.|.   +           +.|++|+.|..|++|+..+..-+....+..
T Consensus       126 G~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~  205 (299)
T KOG1332|consen  126 GKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEG  205 (299)
T ss_pred             CcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhh
Confidence            99999998754   223345689999999999876   3           579999999999999987654333344677


Q ss_pred             ccCcEEEEEecC------CeEEEeecCCcEEEEEccCCc-----ccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEEC
Q 023772          145 FQDSVMSVCLTK------TEIIGGSVDGTVRTFDIRVGR-----ELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDR  213 (277)
Q Consensus       145 ~~~~~~~~~~~~------~~~~~g~~d~~i~i~d~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~  213 (277)
                      |.+-+..+++.|      ..+++++.||++.||..+...     .+.......+..++||+.|+.|+.++.|+.+.+|--
T Consensus       206 H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke  285 (299)
T KOG1332|consen  206 HKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE  285 (299)
T ss_pred             cchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence            777777766654      348999999999999876331     123345678999999999999999999999999976


Q ss_pred             C
Q 023772          214 S  214 (277)
Q Consensus       214 ~  214 (277)
                      .
T Consensus       286 ~  286 (299)
T KOG1332|consen  286 N  286 (299)
T ss_pred             C
Confidence            4

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.94  E-value=1e-24  Score=179.58  Aligned_cols=249  Identities=20%  Similarity=0.262  Sum_probs=177.9

Q ss_pred             cCCccccccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCC----------
Q 023772            3 VSDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN----------   72 (277)
Q Consensus         3 ~~~~~~~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~----------   72 (277)
                      ++.+|......++||++.|.++...+.|.+|++||.||+||||-+.+|++++++.- .+.|.+++|+|..          
T Consensus       385 LrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~  463 (733)
T KOG0650|consen  385 LRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVG  463 (733)
T ss_pred             cCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEec
Confidence            56778888899999999999999999999999999999999999999999887753 3466666666543          


Q ss_pred             ----------------------------------------------------------------------CEEEEEeCC-
Q 023772           73 ----------------------------------------------------------------------SKLISCGGD-   81 (277)
Q Consensus        73 ----------------------------------------------------------------------~~l~t~s~d-   81 (277)
                                                                                            .||+|...+ 
T Consensus       464 ~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~  543 (733)
T KOG0650|consen  464 ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDS  543 (733)
T ss_pred             CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCC
Confidence                                                                                  333332221 


Q ss_pred             --CcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcE--EEEEecCC
Q 023772           82 --RQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSV--MSVCLTKT  157 (277)
Q Consensus        82 --~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~  157 (277)
                        ..|.|.++........|+...+.|..+.|+|...+++.++. ..|++||+.....  +..+.....-+  .++...++
T Consensus       544 ~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqel--vKkL~tg~kwiS~msihp~GD  620 (733)
T KOG0650|consen  544 GNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQEL--VKKLLTGSKWISSMSIHPNGD  620 (733)
T ss_pred             CcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHH--HHHHhcCCeeeeeeeecCCCC
Confidence              22333333222222222233466888999999888877665 6799999875322  11111112223  44555568


Q ss_pred             eEEEeecCCcEEEEEccCCccc---ccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEE------CCCC---ceEEEEecc
Q 023772          158 EIIGGSVDGTVRTFDIRVGREL---SDDLGQPVNCISMSNDGNCILASCLDSTLRLLD------RSTG---ELLQEYKGH  225 (277)
Q Consensus       158 ~~~~g~~d~~i~i~d~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd------~~~~---~~~~~~~~~  225 (277)
                      .++.|+.|+.+..||+......   ...+...+++++|++.-..+++|+.||++.+|-      +-.+   -+++.+.+|
T Consensus       621 nli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH  700 (733)
T KOG0650|consen  621 NLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGH  700 (733)
T ss_pred             eEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCc
Confidence            8999999999999999765432   234567899999999999999999999999874      2222   235677788


Q ss_pred             ccc--eeeeeeEecCCCceEEeecCCCeEEEE
Q 023772          226 ICK--SFKTDCCLTNSDAHVTGGSEDGYIYFW  255 (277)
Q Consensus       226 ~~~--~~~~~~~~~~~~~~l~sgs~d~~i~iw  255 (277)
                      ...  .-.++++|.|...+|++++.||+|++|
T Consensus       701 ~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  701 EKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             eeecccceEeecccCCCceEEecCCCceEEee
Confidence            532  235778899999999999999999998

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.94  E-value=6.6e-25  Score=175.19  Aligned_cols=202  Identities=22%  Similarity=0.347  Sum_probs=167.5

Q ss_pred             ceeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEcCCCC-------eeEEEEeccCccEEEEEEcCCC-CEEEEEeCCC
Q 023772           12 NVLKGHEGAVLAARFNGDG-NYCLSCGKDRTIRLWNPHRG-------IHIKTYKSHGREVRDVHVTADN-SKLISCGGDR   82 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~~~-~~l~s~s~d~~v~iwd~~~~-------~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~d~   82 (277)
                      ..|+||++.=.++.|++.. -.|++++.|+++.+||+...       .....+.+|...|..++|++-+ ..|.+++.|+
T Consensus       171 l~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~  250 (422)
T KOG0264|consen  171 LRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDG  250 (422)
T ss_pred             eEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCC
Confidence            4789999988889999853 58889999999999997643       2356789999999999999855 5678899999


Q ss_pred             cEEEEECC--CCceeEEeecccCceeEEEEecC-CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCe-
Q 023772           83 QIFYWDVS--TGRVIRKFRGHESEVNAVKFNEY-SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE-  158 (277)
Q Consensus        83 ~v~~wd~~--~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  158 (277)
                      .+.+||++  +.++.....+|..+|++++|+|. +.+|||||.|++|.+||+|+... +...+..|.+.+..+.++|.. 
T Consensus       251 ~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~-~lh~~e~H~dev~~V~WSPh~e  329 (422)
T KOG0264|consen  251 KLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK-PLHTFEGHEDEVFQVEWSPHNE  329 (422)
T ss_pred             eEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc-CceeccCCCcceEEEEeCCCCC
Confidence            99999999  56777888999999999999996 45789999999999999997643 677788999999999999865 


Q ss_pred             --EEEeecCCcEEEEEccCCccc--------------c--cCCCCCeeEEEEeCCCCEE-EEEecCCeEEEEECC
Q 023772          159 --IIGGSVDGTVRTFDIRVGREL--------------S--DDLGQPVNCISMSNDGNCI-LASCLDSTLRLLDRS  214 (277)
Q Consensus       159 --~~~g~~d~~i~i~d~~~~~~~--------------~--~~~~~~v~~~~~s~~~~~l-~~~~~d~~i~~wd~~  214 (277)
                        +++++.|+.+.+||+..-...              .  ..+...|..+.|+|...+. ++.+.|+.++||.+.
T Consensus       330 tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  330 TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence              889999999999999642111              1  1223468889999988764 567889999999986

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=4.7e-25  Score=185.10  Aligned_cols=241  Identities=21%  Similarity=0.304  Sum_probs=194.1

Q ss_pred             ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcC---CCCEEEEEeCCCcEEEEECCCC
Q 023772           16 GHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTA---DNSKLISCGGDRQIFYWDVSTG   92 (277)
Q Consensus        16 ~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~t~s~d~~v~~wd~~~~   92 (277)
                      .-+-.+++++.+|+|++|++|..-|++|||++..-+.....++|...|.|+.++.   ..++|+++|.|..|.++|+...
T Consensus       457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn  536 (1080)
T KOG1408|consen  457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN  536 (1080)
T ss_pred             CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc
Confidence            3456799999999999999999999999999998888888999999999999984   3578999999999999999754


Q ss_pred             -ceeEEeecccCceeEEEEecCC--CEEEEEeCCCcEEEEeCccCCCcceEeec----cccCcEEEEEecC--CeEEEee
Q 023772           93 -RVIRKFRGHESEVNAVKFNEYS--SVVVSAGYDQSLRAWDCRSHSTEPIQIID----SFQDSVMSVCLTK--TEIIGGS  163 (277)
Q Consensus        93 -~~~~~~~~h~~~v~~i~~~~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~g~  163 (277)
                       .++.++.+|.+.|+++.|-..+  ..+++++.|..|. |+.............    ......+.+..++  ..++++.
T Consensus       537 y~l~qtld~HSssITsvKFa~~gln~~MiscGADksim-Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c  615 (1080)
T KOG1408|consen  537 YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIM-FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC  615 (1080)
T ss_pred             cchhhhhcccccceeEEEEeecCCceEEEeccCchhhh-eehhccccCceeccccccccccceEEEeeeCCCcceEEEEe
Confidence             5678899999999999998776  6799999998765 333221111111111    0122344555544  5699999


Q ss_pred             cCCcEEEEEccCCcccccC-----CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecC
Q 023772          164 VDGTVRTFDIRVGRELSDD-----LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN  238 (277)
Q Consensus       164 ~d~~i~i~d~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (277)
                      .|+.|+|||+..+++....     +....-.+..+|.|.|+++.+.|+++.++|+.+|+++..+.||..  ..+-..|.+
T Consensus       616 QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE--~VTG~kF~n  693 (1080)
T KOG1408|consen  616 QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSE--AVTGVKFLN  693 (1080)
T ss_pred             cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcch--heeeeeecc
Confidence            9999999999998765432     233455678899999999999999999999999999999999954  445567899


Q ss_pred             CCceEEeecCCCeEEEEECcC
Q 023772          239 SDAHVTGGSEDGYIYFWDLVD  259 (277)
Q Consensus       239 ~~~~l~sgs~d~~i~iwd~~~  259 (277)
                      |-+.|++.+.||+|.+|.+..
T Consensus       694 DCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  694 DCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             cchhheeecCCceEEEEECch
Confidence            999999999999999999765

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.93  E-value=2.7e-24  Score=174.43  Aligned_cols=240  Identities=19%  Similarity=0.300  Sum_probs=182.2

Q ss_pred             eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEE-------------EEeccCccEEEEEEcCCC-CEEEEEe
Q 023772           14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIK-------------TYKSHGREVRDVHVTADN-SKLISCG   79 (277)
Q Consensus        14 l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~-------------~~~~h~~~v~~~~~~~~~-~~l~t~s   79 (277)
                      ...-..+|++++|++.|..|+..+.....+|+|-. |..+.             .-++|...+++.+|+|.+ +.++|++
T Consensus       210 ~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRd-G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s  288 (641)
T KOG0772|consen  210 QPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRD-GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCS  288 (641)
T ss_pred             CcccccccceeeecCCCCeEEEEecCcceeEEccC-CceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEec
Confidence            34556789999999999999988888899999943 32222             236899999999999976 4789999


Q ss_pred             CCCcEEEEECCCCce-eEEe-----ecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceE-eeccccC--cEE
Q 023772           80 GDRQIFYWDVSTGRV-IRKF-----RGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQ-IIDSFQD--SVM  150 (277)
Q Consensus        80 ~d~~v~~wd~~~~~~-~~~~-----~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~--~~~  150 (277)
                      .||++++||++.-+. ...+     .+.+-+++.++|++++++||+|..||.|.+|+.+.....+.. ....|..  .+.
T Consensus       289 ~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~It  368 (641)
T KOG0772|consen  289 YDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDIT  368 (641)
T ss_pred             CCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCcee
Confidence            999999999976432 2222     234567899999999999999999999999998654433332 2234444  677


Q ss_pred             EEEec--CCeEEEeecCCcEEEEEccCCccccc-C----CCCCeeEEEEeCCCCEEEEEe------cCCeEEEEECCCCc
Q 023772          151 SVCLT--KTEIIGGSVDGTVRTFDIRVGRELSD-D----LGQPVNCISMSNDGNCILASC------LDSTLRLLDRSTGE  217 (277)
Q Consensus       151 ~~~~~--~~~~~~g~~d~~i~i~d~~~~~~~~~-~----~~~~v~~~~~s~~~~~l~~~~------~d~~i~~wd~~~~~  217 (277)
                      ++.|+  ++.|++=+.|+++++||++..++... .    ...+-+.++|||+.+.|++|.      ..|.+++||..+..
T Consensus       369 si~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d  448 (641)
T KOG0772|consen  369 SISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD  448 (641)
T ss_pred             EEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee
Confidence            77776  56699999999999999998754321 1    123567789999999999985      46689999999888


Q ss_pred             eEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEE
Q 023772          218 LLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWD  256 (277)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd  256 (277)
                      .++.+.-..  .....|.+.|.=+-++.|+.||.+++|-
T Consensus       449 ~v~ki~i~~--aSvv~~~WhpkLNQi~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  449 TVYKIDIST--ASVVRCLWHPKLNQIFAGSGDGTAHVYY  485 (641)
T ss_pred             eEEEecCCC--ceEEEEeecchhhheeeecCCCceEEEE
Confidence            888765443  2345567888877788999999999864

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.93  E-value=2.6e-24  Score=168.31  Aligned_cols=202  Identities=23%  Similarity=0.354  Sum_probs=166.3

Q ss_pred             eeccCCcEEEEEEeCC--CCEEEEEeCCCcEEEEcCCC----------------CeeEEEEeccCccEEEEEEcC-CCCE
Q 023772           14 LKGHEGAVLAARFNGD--GNYCLSCGKDRTIRLWNPHR----------------GIHIKTYKSHGREVRDVHVTA-DNSK   74 (277)
Q Consensus        14 l~~H~~~V~~~~~~~~--~~~l~s~s~d~~v~iwd~~~----------------~~~~~~~~~h~~~v~~~~~~~-~~~~   74 (277)
                      .-.|.+.++.++.++-  ..++++=+..|.|.|||+..                .+++.++.+|.+.-..++|+| ....
T Consensus       147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~  226 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR  226 (440)
T ss_pred             ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence            4578899998888764  46777889999999999632                356788999999999999999 3456


Q ss_pred             EEEEeCCCcEEEEECCCCce---eEEeecccCceeEEEEecC-CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEE
Q 023772           75 LISCGGDRQIFYWDVSTGRV---IRKFRGHESEVNAVKFNEY-SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVM  150 (277)
Q Consensus        75 l~t~s~d~~v~~wd~~~~~~---~~~~~~h~~~v~~i~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  150 (277)
                      |+||..-+.|++|...+|.=   ...|.+|+..|..++|+|. ..+|++||-||+|+|||+|............|..-|.
T Consensus       227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVN  306 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVN  306 (440)
T ss_pred             cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCcee
Confidence            88998999999999987642   2356789999999999997 5689999999999999999876666666678888888


Q ss_pred             EEEecCCe--EEEeecCCcEEEEEccCCcc-----cccCCCCCeeEEEEeCC-CCEEEEEecCCeEEEEECCC
Q 023772          151 SVCLTKTE--IIGGSVDGTVRTFDIRVGRE-----LSDDLGQPVNCISMSND-GNCILASCLDSTLRLLDRST  215 (277)
Q Consensus       151 ~~~~~~~~--~~~g~~d~~i~i~d~~~~~~-----~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~wd~~~  215 (277)
                      .++++...  |++|+.||+++|||+|+.+.     ....+..+|+++.|+|. ...|++++.|.+|.|||+..
T Consensus       307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence            88888654  89999999999999986532     23457789999999995 46788899999999999853

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.4e-25  Score=189.50  Aligned_cols=234  Identities=17%  Similarity=0.280  Sum_probs=182.5

Q ss_pred             EEEEEeC-CCCEEEEEeCCCcEEEEcCCC---CeeEEEEeccCccEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeE
Q 023772           22 LAARFNG-DGNYCLSCGKDRTIRLWNPHR---GIHIKTYKSHGREVRDVHVTADN-SKLISCGGDRQIFYWDVSTGRVIR   96 (277)
Q Consensus        22 ~~~~~~~-~~~~l~s~s~d~~v~iwd~~~---~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~d~~v~~wd~~~~~~~~   96 (277)
                      ..+.|+. ..++|+||+..|.|.+||+..   .+.+..|..|...+++++|++-. .+|++||.||+||.||+...+-..
T Consensus        91 ~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~  170 (839)
T KOG0269|consen   91 ADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS  170 (839)
T ss_pred             hhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccc
Confidence            3456664 467999999999999999987   56677899999999999999854 578999999999999999988888


Q ss_pred             EeecccCceeEEEEecC-CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCe--EEEeecCCcEEEEEc
Q 023772           97 KFRGHESEVNAVKFNEY-SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE--IIGGSVDGTVRTFDI  173 (277)
Q Consensus        97 ~~~~h~~~v~~i~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~d~~i~i~d~  173 (277)
                      ++.+....|..+.|+|. +..|+++...|.+++||+|.... ....+..|.+++..+.+.|+.  +++|+.|+.++|||+
T Consensus       171 t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r-~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~  249 (839)
T KOG0269|consen  171 TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR-CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDM  249 (839)
T ss_pred             cccccchhhhceeeccCCCceEEEecCCceEEEeeccCchh-HHHHhhcccCceEEEeecCCCceeeecCCCccEEEEec
Confidence            89998999999999985 67899999999999999997643 444567788999999888765  999999999999999


Q ss_pred             cCCcccc---cCCCCCeeEEEEeCCCCEEEE-Ee--cCCeEEEEECCCCc-eEEEEeccccceeeeeeEe-cCCCceEEe
Q 023772          174 RVGRELS---DDLGQPVNCISMSNDGNCILA-SC--LDSTLRLLDRSTGE-LLQEYKGHICKSFKTDCCL-TNSDAHVTG  245 (277)
Q Consensus       174 ~~~~~~~---~~~~~~v~~~~~s~~~~~l~~-~~--~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~l~s  245 (277)
                      ...+...   .....++.++.|-|+..+.++ ++  .|-.|++||++..- +..+|.-|...  ....++ +.+-..+.+
T Consensus       250 t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~--vt~i~W~~~d~~~l~s  327 (839)
T KOG0269|consen  250 TDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDS--VTGIAWDSGDRINLWS  327 (839)
T ss_pred             cCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCcc--ccceeccCCCceeeEe
Confidence            7654322   234678999999998776544 43  58899999997543 34566666432  233333 334456778


Q ss_pred             ecCCCeEEEEECc
Q 023772          246 GSEDGYIYFWDLV  258 (277)
Q Consensus       246 gs~d~~i~iwd~~  258 (277)
                      ++.||.|..=.++
T Consensus       328 ~sKD~tv~qh~~k  340 (839)
T KOG0269|consen  328 CSKDGTVLQHLFK  340 (839)
T ss_pred             ecCccHHHHhhhh
Confidence            8888887654333

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.93  E-value=8.9e-25  Score=176.81  Aligned_cols=251  Identities=18%  Similarity=0.318  Sum_probs=198.9

Q ss_pred             eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC---eeEEEEec--cCccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 023772           15 KGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG---IHIKTYKS--HGREVRDVHVTADNSKLISCGGDRQIFYWDV   89 (277)
Q Consensus        15 ~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~---~~~~~~~~--h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~   89 (277)
                      -.|...|.++.++...+.++|||. |-|+|||+...   ..+..+..  ....|+++.+.|+++.|++|+.-.++.|||+
T Consensus       416 L~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL  494 (705)
T KOG0639|consen  416 LAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL  494 (705)
T ss_pred             hccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence            368899999999999999999998 89999997532   22333322  3567999999999999999999999999999


Q ss_pred             CCCcee--EEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec--CCeEEEeecC
Q 023772           90 STGRVI--RKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT--KTEIIGGSVD  165 (277)
Q Consensus        90 ~~~~~~--~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~d  165 (277)
                      ..-.+.  ..+....-...+++.+||.++.++|..||.|.+||+.+..  .+..+.+|.+.+.++.++  +..+.+|+.|
T Consensus       495 AapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~--~VrqfqGhtDGascIdis~dGtklWTGGlD  572 (705)
T KOG0639|consen  495 AAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT--LVRQFQGHTDGASCIDISKDGTKLWTGGLD  572 (705)
T ss_pred             cCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce--eeecccCCCCCceeEEecCCCceeecCCCc
Confidence            764432  2233223345678899999999999999999999998654  456678888887777776  6779999999


Q ss_pred             CcEEEEEccCCccccc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEE
Q 023772          166 GTVRTFDIRVGRELSD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVT  244 (277)
Q Consensus       166 ~~i~i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  244 (277)
                      .++|.||++.++++.. .+...|.++..+|++.|++.|-+.+.+.+-.....+   .|..|.+..-+++..|.+.|++++
T Consensus       573 ntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~---kyqlhlheScVLSlKFa~cGkwfv  649 (705)
T KOG0639|consen  573 NTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE---KYQLHLHESCVLSLKFAYCGKWFV  649 (705)
T ss_pred             cceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCcc---ceeecccccEEEEEEecccCceee
Confidence            9999999999877643 456789999999999999999999988777664322   334444456677788999999999


Q ss_pred             eecCCCeEEEEECcCccceeeeccCcc
Q 023772          245 GGSEDGYIYFWDLVDASVVAKFKAHSL  271 (277)
Q Consensus       245 sgs~d~~i~iwd~~~~~~~~~~~~h~~  271 (277)
                      +-+.|+.+..|...=|.-+.+.+.-+.
T Consensus       650 StGkDnlLnawrtPyGasiFqskE~Ss  676 (705)
T KOG0639|consen  650 STGKDNLLNAWRTPYGASIFQSKESSS  676 (705)
T ss_pred             ecCchhhhhhccCccccceeeccccCc
Confidence            999999999999888877766665443

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.93  E-value=3.3e-24  Score=177.78  Aligned_cols=248  Identities=19%  Similarity=0.266  Sum_probs=178.8

Q ss_pred             ceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEE--EeccCccEEEEEEcCCCC-EEEEEeCCCcEEEEE
Q 023772           12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKT--YKSHGREVRDVHVTADNS-KLISCGGDRQIFYWD   88 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~-~l~t~s~d~~v~~wd   88 (277)
                      .....|.++|..+.|.|....|++++-|.++|.||+++.++...  +.+|.+.|.+++|.+.+. .|++|+.||.+.|||
T Consensus        94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD  173 (720)
T KOG0321|consen   94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWD  173 (720)
T ss_pred             cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEE
Confidence            44568999999999999767889999999999999999888776  899999999999999664 688999999999999


Q ss_pred             CCCCc---------------------------eeEEeecccCceeE---EEEecCCCEEEEEeC-CCcEEEEeCccCCCc
Q 023772           89 VSTGR---------------------------VIRKFRGHESEVNA---VKFNEYSSVVVSAGY-DQSLRAWDCRSHSTE  137 (277)
Q Consensus        89 ~~~~~---------------------------~~~~~~~h~~~v~~---i~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~  137 (277)
                      +.-..                           .++....|...|.+   +-+..|...|+++|. |+.|++||++.....
T Consensus       174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~  253 (720)
T KOG0321|consen  174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTA  253 (720)
T ss_pred             EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccc
Confidence            84221                           11223345555555   556677888999888 999999999864321


Q ss_pred             ----ceEe--eccc---cCcEEEEEec--CCeEEEeecCCcEEEEEccCCccccc--CCCCCe----eEEEEeCCCCEEE
Q 023772          138 ----PIQI--IDSF---QDSVMSVCLT--KTEIIGGSVDGTVRTFDIRVGRELSD--DLGQPV----NCISMSNDGNCIL  200 (277)
Q Consensus       138 ----~~~~--~~~~---~~~~~~~~~~--~~~~~~g~~d~~i~i~d~~~~~~~~~--~~~~~v----~~~~~s~~~~~l~  200 (277)
                          +...  +..+   .-.+..+..+  +..+.+...|+.|..|+++.-..-..  ..+..+    ..-..+|++.+++
T Consensus       254 ~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~  333 (720)
T KOG0321|consen  254 YRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLL  333 (720)
T ss_pred             cccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEe
Confidence                1111  1111   1123333333  46666666699999999976432111  112222    2235689999999


Q ss_pred             EEecCCeEEEEECCCCce-EEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCc
Q 023772          201 ASCLDSTLRLLDRSTGEL-LQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDA  260 (277)
Q Consensus       201 ~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~  260 (277)
                      +|+.|...++|.+.+-+. ...+.||...+..+.++.++... +++++.|..+++|++.++
T Consensus       334 SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~-v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  334 SGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTP-VATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             ccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCC-ceeeccCcceEEEeccCc
Confidence            999999999999976543 34567887666666666555544 566699999999999775

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=2.6e-25  Score=173.13  Aligned_cols=207  Identities=20%  Similarity=0.300  Sum_probs=170.4

Q ss_pred             EEEEeccCccEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeC
Q 023772           53 IKTYKSHGREVRDVHVTADN-SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDC  131 (277)
Q Consensus        53 ~~~~~~h~~~v~~~~~~~~~-~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~  131 (277)
                      +..+.+|...|.+++=+|+. ..+++|+.||.|++||+.+-+++.++.+|.+.|.+|.+..  +.+++++.|.+|+.|.+
T Consensus        59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~  136 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI  136 (433)
T ss_pred             hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence            45668999999999999987 7899999999999999999999999999999999999987  78899999999999974


Q ss_pred             ccCC------------------------------------CcceEeeccccCcEEEEEecCCe---EEEeecCCcEEEEE
Q 023772          132 RSHS------------------------------------TEPIQIIDSFQDSVMSVCLTKTE---IIGGSVDGTVRTFD  172 (277)
Q Consensus       132 ~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~d~~i~i~d  172 (277)
                      ....                                    ..+++.+....+.+.++.+++.+   |++++.|+.|.+||
T Consensus       137 ~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD  216 (433)
T KOG0268|consen  137 DGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYD  216 (433)
T ss_pred             cCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEe
Confidence            3210                                    01233333445566777777654   77888999999999


Q ss_pred             ccCCccccc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCC-CceEEEEeccccceeeeeeEecCCCceEEeecCCC
Q 023772          173 IRVGRELSD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRST-GELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDG  250 (277)
Q Consensus       173 ~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~  250 (277)
                      +++...+.. ......+.++|+|++--+.+|++|-.++.||++. ..++..+.+|..  ..++..++|.|.-+++||-|.
T Consensus       217 ~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvs--AV~dVdfsptG~EfvsgsyDk  294 (433)
T KOG0268|consen  217 LRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVS--AVMDVDFSPTGQEFVSGSYDK  294 (433)
T ss_pred             cccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccce--eEEEeccCCCcchhccccccc
Confidence            998876644 3456788999999888889999999999999975 466788888854  457778999999999999999


Q ss_pred             eEEEEECcCccce
Q 023772          251 YIYFWDLVDASVV  263 (277)
Q Consensus       251 ~i~iwd~~~~~~~  263 (277)
                      +||||..+.+.-.
T Consensus       295 sIRIf~~~~~~SR  307 (433)
T KOG0268|consen  295 SIRIFPVNHGHSR  307 (433)
T ss_pred             eEEEeecCCCcch
Confidence            9999999887543

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=4e-26  Score=191.41  Aligned_cols=192  Identities=21%  Similarity=0.337  Sum_probs=170.5

Q ss_pred             eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 023772           13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTG   92 (277)
Q Consensus        13 ~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~   92 (277)
                      .|.+|+.+|.++.|+++..+|++|+.||+||+||++.++.++++-+|...+.++.|+|-+.+.++|+.|+.+++||....
T Consensus        65 S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~  144 (825)
T KOG0267|consen   65 SLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK  144 (825)
T ss_pred             eeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhcc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCe--EEEeecCCcEEE
Q 023772           93 RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE--IIGGSVDGTVRT  170 (277)
Q Consensus        93 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~d~~i~i  170 (277)
                      .|...+.+|...|..+.|.|+|++++.++.|.++++||+..+.  -...+..|...+..+.+.+..  ++.|+.|+++++
T Consensus       145 Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk--~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f  222 (825)
T KOG0267|consen  145 GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK--LSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRF  222 (825)
T ss_pred             CceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccc--cccccccccccccccccCchhhhhccCCCCceeee
Confidence            8999999999999999999999999999999999999987543  234456677788888877765  678999999999


Q ss_pred             EEccCCcccccC--CCCCeeEEEEeCCCCEEEEEecCC
Q 023772          171 FDIRVGRELSDD--LGQPVNCISMSNDGNCILASCLDS  206 (277)
Q Consensus       171 ~d~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~  206 (277)
                      ||+++.+.+...  ....|.++.|+|++..+++|..+.
T Consensus       223 ~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  223 WDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             eccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence            999987666442  245799999999999888876554

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=4.7e-24  Score=169.98  Aligned_cols=231  Identities=22%  Similarity=0.337  Sum_probs=168.0

Q ss_pred             CCCEEEEEeCCCcEEEEcCCCC---eeE----------------E--EEeccCccEEEEEEcCCC-CEEEEEeCCCcEEE
Q 023772           29 DGNYCLSCGKDRTIRLWNPHRG---IHI----------------K--TYKSHGREVRDVHVTADN-SKLISCGGDRQIFY   86 (277)
Q Consensus        29 ~~~~l~s~s~d~~v~iwd~~~~---~~~----------------~--~~~~h~~~v~~~~~~~~~-~~l~t~s~d~~v~~   86 (277)
                      -|+|+|-|..|..|-|||+.--   .+.                +  .-.+|...|.++.|+... ..|++||.|.+|++
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            3789999999999999996310   000                0  123688889899988754 56889999999999


Q ss_pred             EECCCCceeEEeecccCceeEEEEecC-CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec---CCeEEEe
Q 023772           87 WDVSTGRVIRKFRGHESEVNAVKFNEY-SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT---KTEIIGG  162 (277)
Q Consensus        87 wd~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g  162 (277)
                      ||+.++++..++..|...|.++.|+|. ...+++|+.|+++.+.|+|.........  ...+.+-.+.++   +..++++
T Consensus       271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w--k~~g~VEkv~w~~~se~~f~~~  348 (463)
T KOG0270|consen  271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW--KFDGEVEKVAWDPHSENSFFVS  348 (463)
T ss_pred             EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE--EeccceEEEEecCCCceeEEEe
Confidence            999999999999999999999999986 6789999999999999999532221111  122334445554   4558899


Q ss_pred             ecCCcEEEEEccCCc-cccc--CCCCCeeEEEEeCCC-CEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecC
Q 023772          163 SVDGTVRTFDIRVGR-ELSD--DLGQPVNCISMSNDG-NCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN  238 (277)
Q Consensus       163 ~~d~~i~i~d~~~~~-~~~~--~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (277)
                      +.||+++-+|+|... .+..  .|..+|.++++++.- .++++++.|+.+++|++.....-.... |. ......+|+.+
T Consensus       349 tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~-~~-~~~~rl~c~~~  426 (463)
T KOG0270|consen  349 TDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKE-HS-FKLGRLHCFAL  426 (463)
T ss_pred             cCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccc-cc-ccccceeeccc
Confidence            999999999999863 3332  467799999998754 467889999999999986443321111 11 11122344443


Q ss_pred             C---CceEEeecCCCeEEEEECcCccce
Q 023772          239 S---DAHVTGGSEDGYIYFWDLVDASVV  263 (277)
Q Consensus       239 ~---~~~l~sgs~d~~i~iwd~~~~~~~  263 (277)
                      +   ...++.|+..+.+++||+.+...+
T Consensus       427 ~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  427 DPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             CCCcceEEEecCccceEEEeecccChhH
Confidence            2   245777888889999999887665

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.93  E-value=1.3e-24  Score=175.83  Aligned_cols=234  Identities=17%  Similarity=0.299  Sum_probs=188.3

Q ss_pred             CCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCee--EEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 023772           18 EGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIH--IKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVI   95 (277)
Q Consensus        18 ~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~   95 (277)
                      .+-|+++...+||+-|++||+-.++.|||+.....  ...+......+.+++.+||.+..+++-.||.|.|||+.+..++
T Consensus       465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~V  544 (705)
T KOG0639|consen  465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLV  544 (705)
T ss_pred             ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceee
Confidence            35588899999999999999999999999876443  2233333457899999999999999999999999999999999


Q ss_pred             EEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEE--ecCCeEEEeecCCcEEEEEc
Q 023772           96 RKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVC--LTKTEIIGGSVDGTVRTFDI  173 (277)
Q Consensus        96 ~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~d~~i~i~d~  173 (277)
                      +.|++|+..+.+|.++++|..|-||+.|.+|+.||++.......   +.+...|.++.  +..+-+++|-.++.+.+-..
T Consensus       545 rqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqq---hdF~SQIfSLg~cP~~dWlavGMens~vevlh~  621 (705)
T KOG0639|consen  545 RQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ---HDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHT  621 (705)
T ss_pred             ecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhh---hhhhhhheecccCCCccceeeecccCcEEEEec
Confidence            99999999999999999999999999999999999987543211   11223344444  44455999999998888776


Q ss_pred             cCCcccc-cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeE
Q 023772          174 RVGRELS-DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYI  252 (277)
Q Consensus       174 ~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i  252 (277)
                      ...+... ..+...|.++.|.+.|+++++.+.|+.+..|..--|..+....  + ....+.|-++.|++++++||-|...
T Consensus       622 skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk--E-~SsVlsCDIS~ddkyIVTGSGdkkA  698 (705)
T KOG0639|consen  622 SKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--E-SSSVLSCDISFDDKYIVTGSGDKKA  698 (705)
T ss_pred             CCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc--c-cCcceeeeeccCceEEEecCCCcce
Confidence            5544432 3456789999999999999999999999999988776554332  2 2345778899999999999999888


Q ss_pred             EEEEC
Q 023772          253 YFWDL  257 (277)
Q Consensus       253 ~iwd~  257 (277)
                      -+|.+
T Consensus       699 TVYeV  703 (705)
T KOG0639|consen  699 TVYEV  703 (705)
T ss_pred             EEEEE
Confidence            88865

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.93  E-value=2.4e-23  Score=177.32  Aligned_cols=259  Identities=19%  Similarity=0.288  Sum_probs=194.3

Q ss_pred             eeeccCCcEEEEEEeCCCCEE-EEEeCCCcEEEEcCCCCeeEEEEe-ccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772           13 VLKGHEGAVLAARFNGDGNYC-LSCGKDRTIRLWNPHRGIHIKTYK-SHGREVRDVHVTADNSKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        13 ~l~~H~~~V~~~~~~~~~~~l-~s~s~d~~v~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~   90 (277)
                      .++.-.++|+++.|..||+.+ ++|+..|.+.+||++..+.....+ .|.+.|....|.+....++|++.|+.+++|=.+
T Consensus       239 sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD  318 (910)
T KOG1539|consen  239 SFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFD  318 (910)
T ss_pred             EEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEee
Confidence            334335999999999999754 567778999999999887776655 798999999999999999999999998888443


Q ss_pred             C--C--ceeEEeecccCc--------------------------------------------------------------
Q 023772           91 T--G--RVIRKFRGHESE--------------------------------------------------------------  104 (277)
Q Consensus        91 ~--~--~~~~~~~~h~~~--------------------------------------------------------------  104 (277)
                      +  |  +.++.-.+|..|                                                              
T Consensus       319 ~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i  398 (910)
T KOG1539|consen  319 SGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPI  398 (910)
T ss_pred             CCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcc
Confidence            2  2  122232333333                                                              


Q ss_pred             ----------------------------------------------------eeEEEEecCCCEEEEEeCCCcEEEEeCc
Q 023772          105 ----------------------------------------------------VNAVKFNEYSSVVVSAGYDQSLRAWDCR  132 (277)
Q Consensus       105 ----------------------------------------------------v~~i~~~~~~~~l~s~~~d~~i~iwd~~  132 (277)
                                                                          +.+++.++.|+..+.|...|+|-+|+++
T Consensus       399 ~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQ  478 (910)
T KOG1539|consen  399 VEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQ  478 (910)
T ss_pred             eeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcc
Confidence                                                                4445555555555555555666666555


Q ss_pred             cCCCcceE-eeccccCcEEEEEecCCe--EEEeecCCcEEEEEccCCccccc-CCCCCeeEEEEeCCCCEEEEEecCCeE
Q 023772          133 SHSTEPIQ-IIDSFQDSVMSVCLTKTE--IIGGSVDGTVRTFDIRVGRELSD-DLGQPVNCISMSNDGNCILASCLDSTL  208 (277)
Q Consensus       133 ~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~g~~d~~i~i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i  208 (277)
                      ++-..... ....|..++..++.+...  +++++.+|.+++||+........ ..+.++.++..+.....++++..|-.|
T Consensus       479 SGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I  558 (910)
T KOG1539|consen  479 SGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSI  558 (910)
T ss_pred             cCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeE
Confidence            43211111 012355677777777644  89999999999999987653322 456788999999888889999999999


Q ss_pred             EEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCccee
Q 023772          209 RLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVV  273 (277)
Q Consensus       209 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v  273 (277)
                      +++|..+.+.++.|.||.+  ..++.+|||||+++++++.|++||+||+.++.++.-+--.+..+
T Consensus       559 ~vvD~~t~kvvR~f~gh~n--ritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~  621 (910)
T KOG1539|consen  559 RVVDVVTRKVVREFWGHGN--RITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCT  621 (910)
T ss_pred             EEEEchhhhhhHHhhcccc--ceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcce
Confidence            9999999999999999965  46788999999999999999999999999999998776554433

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.93  E-value=2.1e-23  Score=166.91  Aligned_cols=258  Identities=19%  Similarity=0.222  Sum_probs=195.6

Q ss_pred             ccceeeccCCcEEEEEEeCCC--CEEEEEeCCCcEEEEcCCC----CeeEEEEeccCccEEEEEEcCCC-CEEEEEeCCC
Q 023772           10 EANVLKGHEGAVLAARFNGDG--NYCLSCGKDRTIRLWNPHR----GIHIKTYKSHGREVRDVHVTADN-SKLISCGGDR   82 (277)
Q Consensus        10 ~~~~l~~H~~~V~~~~~~~~~--~~l~s~s~d~~v~iwd~~~----~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~d~   82 (277)
                      +.++.+-|.+.|++++|+|..  +++++|..-|.|-+||..+    ...+..+..|+.+|.++.|+|.+ ..+++.|.||
T Consensus       178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG  257 (498)
T KOG4328|consen  178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG  257 (498)
T ss_pred             ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence            356678899999999999954  5888999999999999843    23456788899999999999955 6899999999


Q ss_pred             cEEEEECCCCc--eeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC---
Q 023772           83 QIFYWDVSTGR--VIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT---  157 (277)
Q Consensus        83 ~v~~wd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---  157 (277)
                      +|++-|++.+.  .+.+...-...+.+++|+.....++.+..=|...+||++....+ ...+..|...|..++++|.   
T Consensus       258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~-~~~~~lh~kKI~sv~~NP~~p~  336 (498)
T KOG4328|consen  258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE-YENLRLHKKKITSVALNPVCPW  336 (498)
T ss_pred             eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCcc-chhhhhhhcccceeecCCCCch
Confidence            99999998764  33334334556778888888777777777779999999876432 2223344557888888764   


Q ss_pred             eEEEeecCCcEEEEEccCCcc-----cc-cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECC----CCceEEEEecccc
Q 023772          158 EIIGGSVDGTVRTFDIRVGRE-----LS-DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRS----TGELLQEYKGHIC  227 (277)
Q Consensus       158 ~~~~g~~d~~i~i~d~~~~~~-----~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~----~~~~~~~~~~~~~  227 (277)
                      .+++++.|++.+|||+|.-..     +. ..+..+|++..|||.+..|++.+.|..|+|||..    .-.+..++. |.+
T Consensus       337 ~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~  415 (498)
T KOG4328|consen  337 FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNN  415 (498)
T ss_pred             heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccC
Confidence            499999999999999986431     11 2355689999999998889999999999999983    223333332 221


Q ss_pred             c----eeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccC
Q 023772          228 K----SFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAH  269 (277)
Q Consensus       228 ~----~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h  269 (277)
                      .    -...-+.+.|+..+++.|-.-..|-|+|-..++.+.++...
T Consensus       416 ~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P  461 (498)
T KOG4328|consen  416 RTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDP  461 (498)
T ss_pred             cccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCc
Confidence            1    12233567899999999988888999999999888776543

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=4.5e-24  Score=180.41  Aligned_cols=254  Identities=17%  Similarity=0.282  Sum_probs=183.8

Q ss_pred             CcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC----eeEEEEeccC---ccEEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 023772           19 GAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG----IHIKTYKSHG---REVRDVHVTA-DNSKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        19 ~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~----~~~~~~~~h~---~~v~~~~~~~-~~~~l~t~s~d~~v~~wd~~   90 (277)
                      +....+..+++-..++.+|. ..+++|-....    ++...++.-+   ..+..+.|.. ..++|+|++..|.|.+||+.
T Consensus        40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln  118 (839)
T KOG0269|consen   40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN  118 (839)
T ss_pred             cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence            34555666788888888877 58888865432    2222222111   2345666764 45789999999999999998


Q ss_pred             C---CceeEEeecccCceeEEEEecC-CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC---CeEEEee
Q 023772           91 T---GRVIRKFRGHESEVNAVKFNEY-SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK---TEIIGGS  163 (277)
Q Consensus        91 ~---~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~  163 (277)
                      .   .+.+..|..|+..++.++|++. ..+|++||.||+|++||++....  ...+......+..+.+.+   +.++++.
T Consensus       119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S--~~t~~~nSESiRDV~fsp~~~~~F~s~~  196 (839)
T KOG0269|consen  119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS--KSTFRSNSESIRDVKFSPGYGNKFASIH  196 (839)
T ss_pred             ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc--cccccccchhhhceeeccCCCceEEEec
Confidence            6   5667788999999999999976 56899999999999999987543  333334455666676654   5699999


Q ss_pred             cCCcEEEEEccCCcccc---cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCC
Q 023772          164 VDGTVRTFDIRVGRELS---DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSD  240 (277)
Q Consensus       164 ~d~~i~i~d~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (277)
                      ..|.++.||+|......   ..+..+|.|+.|+|++.+||+|+.|++|+|||+.+.+.-....-++.. ....+.+-|..
T Consensus       197 dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTia-pv~rVkWRP~~  275 (839)
T KOG0269|consen  197 DSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIA-PVGRVKWRPAR  275 (839)
T ss_pred             CCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecc-eeeeeeeccCc
Confidence            99999999999875443   356789999999999999999999999999999765543333322211 22333455654


Q ss_pred             c-eEEeec--CCCeEEEEECcCc-cceeeeccCcceeEee
Q 023772          241 A-HVTGGS--EDGYIYFWDLVDA-SVVAKFKAHSLVVKLL  276 (277)
Q Consensus       241 ~-~l~sgs--~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~  276 (277)
                      . .||+++  .|-.|++||+... .+...+..|...++.+
T Consensus       276 ~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i  315 (839)
T KOG0269|consen  276 SYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGI  315 (839)
T ss_pred             cchhhhhhccccceEEEEeeccccccceeeeccCccccce
Confidence            4 466665  4888999999874 5567888888776654

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.92  E-value=1.6e-23  Score=169.37  Aligned_cols=253  Identities=16%  Similarity=0.175  Sum_probs=188.1

Q ss_pred             cEEEEEEeCCCC-EEEEEeCCCcEEEEcCC--CCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q 023772           20 AVLAARFNGDGN-YCLSCGKDRTIRLWNPH--RGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIR   96 (277)
Q Consensus        20 ~V~~~~~~~~~~-~l~s~s~d~~v~iwd~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~   96 (277)
                      .+.++.|+.... ..++.+.|..+++|.-.  +++....-+.....-.|++......++++|+..++|++||+....+.+
T Consensus        36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr  115 (673)
T KOG4378|consen   36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHR  115 (673)
T ss_pred             cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhh
Confidence            388999988764 33356888999999633  222222211112233455555556899999999999999999888889


Q ss_pred             EeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEE--ecCC-eEEEeecCCcEEEEEc
Q 023772           97 KFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVC--LTKT-EIIGGSVDGTVRTFDI  173 (277)
Q Consensus        97 ~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~g~~d~~i~i~d~  173 (277)
                      .+++|.+.|+.+.++..+++|++++..|.|.+..+.+.......... ....+.-+.  +... .|.+++.+|.+.+||.
T Consensus       116 ~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~-sgqsvRll~ys~skr~lL~~asd~G~VtlwDv  194 (673)
T KOG4378|consen  116 FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTID-SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDV  194 (673)
T ss_pred             hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecC-CCCeEEEeecccccceeeEeeccCCeEEEEec
Confidence            99999999999999999999999999999999998765433222222 123333333  3333 3678899999999999


Q ss_pred             cCCcccc---cCCCCCeeEEEEeCCC-CEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCC
Q 023772          174 RVGRELS---DDLGQPVNCISMSNDG-NCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSED  249 (277)
Q Consensus       174 ~~~~~~~---~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d  249 (277)
                      .....+.   ..+..|...++|+|.. ..|++-+.|..|.+||.+..+....+.-..   .....+|+++|.+|+.|+..
T Consensus       195 ~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~---Plstvaf~~~G~~L~aG~s~  271 (673)
T KOG4378|consen  195 QGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSH---PLSTVAFSECGTYLCAGNSK  271 (673)
T ss_pred             cCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecC---CcceeeecCCceEEEeecCC
Confidence            7665443   3567788999999965 456778999999999998777666554321   23446799999999999999


Q ss_pred             CeEEEEECcC-ccceeeeccCcceeEee
Q 023772          250 GYIYFWDLVD-ASVVAKFKAHSLVVKLL  276 (277)
Q Consensus       250 ~~i~iwd~~~-~~~~~~~~~h~~~v~~~  276 (277)
                      |.|..||++. ...++.+.+|+..|+.+
T Consensus       272 G~~i~YD~R~~k~Pv~v~sah~~sVt~v  299 (673)
T KOG4378|consen  272 GELIAYDMRSTKAPVAVRSAHDASVTRV  299 (673)
T ss_pred             ceEEEEecccCCCCceEeeecccceeEE
Confidence            9999999986 46789999999888765

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=4.3e-22  Score=166.30  Aligned_cols=242  Identities=17%  Similarity=0.249  Sum_probs=196.3

Q ss_pred             eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCee-EEEEecc-CccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 023772           15 KGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIH-IKTYKSH-GREVRDVHVTADNSKLISCGGDRQIFYWDVSTG   92 (277)
Q Consensus        15 ~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~-~~~~~~h-~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~   92 (277)
                      ..-..+|.+++|+.+.+.||.+=.||.|-||++..+-. ...+.++ +..|.+++|. ++.+|++.+.+|.|..||+.++
T Consensus        22 d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~l  100 (691)
T KOG2048|consen   22 DYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTL  100 (691)
T ss_pred             eeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccC
Confidence            34568899999999999999999999999999987533 3445554 4579999999 6779999999999999999999


Q ss_pred             ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCe--EEEeecCCcEEE
Q 023772           93 RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE--IIGGSVDGTVRT  170 (277)
Q Consensus        93 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~d~~i~i  170 (277)
                      +....+....+.|++++.+|.+..++.|+.||.+..++...........+......+.++.++++.  +++|+.||.|++
T Consensus       101 k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iri  180 (691)
T KOG2048|consen  101 KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRI  180 (691)
T ss_pred             ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEE
Confidence            999999989999999999999999999999998877776544332233334445778888888765  799999999999


Q ss_pred             EEccCCcccc-----c-C----CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCC
Q 023772          171 FDIRVGRELS-----D-D----LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSD  240 (277)
Q Consensus       171 ~d~~~~~~~~-----~-~----~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (277)
                      ||...+....     . .    ...-|.++.|-.++ .|++|..-|++++||...+.+++.+..|...+  ...+..+++
T Consensus       181 wd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adV--l~Lav~~~~  257 (691)
T KOG2048|consen  181 WDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADV--LALAVADNE  257 (691)
T ss_pred             EEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcce--eEEEEcCCC
Confidence            9998886543     1 1    12347777777666 48999999999999999999999998886554  444567888


Q ss_pred             ceEEeecCCCeEEEEECcCc
Q 023772          241 AHVTGGSEDGYIYFWDLVDA  260 (277)
Q Consensus       241 ~~l~sgs~d~~i~iwd~~~~  260 (277)
                      .++.+++.|+.|-.|...++
T Consensus       258 d~vfsaGvd~~ii~~~~~~~  277 (691)
T KOG2048|consen  258 DRVFSAGVDPKIIQYSLTTN  277 (691)
T ss_pred             CeEEEccCCCceEEEEecCC
Confidence            89999999999998887776

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.92  E-value=4.3e-22  Score=161.37  Aligned_cols=233  Identities=19%  Similarity=0.295  Sum_probs=181.5

Q ss_pred             CcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----
Q 023772           19 GAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGR-----   93 (277)
Q Consensus        19 ~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~-----   93 (277)
                      .-|+|++|.++|+. +||.++|.|.||+..+.+..+....|.+.|.+++...+| .|++|+.|+.|..||-.-.+     
T Consensus       247 k~Vl~v~F~engdv-iTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~G-tllSGgKDRki~~Wd~~y~k~r~~e  324 (626)
T KOG2106|consen  247 KFVLCVTFLENGDV-ITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDG-TLLSGGKDRKIILWDDNYRKLRETE  324 (626)
T ss_pred             eEEEEEEEcCCCCE-EeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCc-cEeecCccceEEecccccccccccc
Confidence            45999999999876 699999999999998888777777999999999998876 55669999999999932110     


Q ss_pred             ------ee-----------------------------EEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcc
Q 023772           94 ------VI-----------------------------RKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEP  138 (277)
Q Consensus        94 ------~~-----------------------------~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  138 (277)
                            .+                             ....+|..+.+.++.+|+.+.++|++.|+.+++|+  .+..+.
T Consensus       325 lPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~w  402 (626)
T KOG2106|consen  325 LPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEW  402 (626)
T ss_pred             CchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeE
Confidence                  01                             11246888999999999999999999999999999  333333


Q ss_pred             eEeeccccCcEEEEEecCC-eEEEeecCCcEEEEEccCCccccc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCC
Q 023772          139 IQIIDSFQDSVMSVCLTKT-EIIGGSVDGTVRTFDIRVGRELSD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTG  216 (277)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~-~~~~g~~d~~i~i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~  216 (277)
                      ..++   ..++.+..+.+. .++.|+..|...+.|.++...+.. ...++++++.|+|+|.+|+.|+.|+.|+||.+..+
T Consensus       403 t~~~---~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~  479 (626)
T KOG2106|consen  403 TKII---EDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN  479 (626)
T ss_pred             EEEe---cCceeEeeccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCC
Confidence            3222   334445555443 588899999999999988554332 22789999999999999999999999999998654


Q ss_pred             -ceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcC
Q 023772          217 -ELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVD  259 (277)
Q Consensus       217 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~  259 (277)
                       .....+.-+.. .+++..-+++|+.++.+-|-|-.|.+|....
T Consensus       480 g~~y~r~~k~~g-s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~  522 (626)
T KOG2106|consen  480 GRKYSRVGKCSG-SPITHLDWSSDSQFLVSNSGDYEILYWKPSE  522 (626)
T ss_pred             CcEEEEeeeecC-ceeEEeeecCCCceEEeccCceEEEEEcccc
Confidence             33333333333 5677778999999999999999999995443

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.91  E-value=1.3e-22  Score=172.84  Aligned_cols=242  Identities=21%  Similarity=0.288  Sum_probs=188.7

Q ss_pred             eeccCCcEEEEEEe-CCCCEEEEEeCCCcEEEEcCCC-------Ce---------------------eEEEE--------
Q 023772           14 LKGHEGAVLAARFN-GDGNYCLSCGKDRTIRLWNPHR-------GI---------------------HIKTY--------   56 (277)
Q Consensus        14 l~~H~~~V~~~~~~-~~~~~l~s~s~d~~v~iwd~~~-------~~---------------------~~~~~--------   56 (277)
                      -.||..|-.+++|. .+|..|.+++.|+++|.+++..       +.                     ++..|        
T Consensus       330 R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~  409 (910)
T KOG1539|consen  330 RGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREK  409 (910)
T ss_pred             ccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhh
Confidence            35899999999998 6899999999999999987421       00                     00000        


Q ss_pred             -----------------------------eccC------ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe---
Q 023772           57 -----------------------------KSHG------REVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKF---   98 (277)
Q Consensus        57 -----------------------------~~h~------~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~---   98 (277)
                                                   -.+.      ..+++++.++.|++.+.|+..|.|-+|++.+|-...+|   
T Consensus       410 ~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~  489 (910)
T KOG1539|consen  410 EWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDS  489 (910)
T ss_pred             hhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccC
Confidence                                         0122      56889999999999999999999999999999998888   


Q ss_pred             ecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCCcEEEEEccCCcc
Q 023772           99 RGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRE  178 (277)
Q Consensus        99 ~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~  178 (277)
                      ..|..+|.+++...-++.+++++.||-++.||...........+ ...............++.+..|=.|+++|..+.+.
T Consensus       490 ~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kv  568 (910)
T KOG1539|consen  490 PAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKV  568 (910)
T ss_pred             ccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhh
Confidence            58999999999999999999999999999999875432111111 11222223333344466777788899999987665


Q ss_pred             ccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCC-CeEEEE
Q 023772          179 LSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSED-GYIYFW  255 (277)
Q Consensus       179 ~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d-~~i~iw  255 (277)
                      .+.  .++..++.++|||||+||++++.|++||+||+.++.++..+.-.   ...+...++|+|.+||+...| .-|++|
T Consensus       569 vR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd---~~~~sls~SPngD~LAT~Hvd~~gIylW  645 (910)
T KOG1539|consen  569 VREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD---SPCTSLSFSPNGDFLATVHVDQNGIYLW  645 (910)
T ss_pred             hHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC---CcceeeEECCCCCEEEEEEecCceEEEE
Confidence            443  46789999999999999999999999999999999999877543   345667899999999999988 569999


Q ss_pred             ECcC
Q 023772          256 DLVD  259 (277)
Q Consensus       256 d~~~  259 (277)
                      --..
T Consensus       646 sNks  649 (910)
T KOG1539|consen  646 SNKS  649 (910)
T ss_pred             Echh
Confidence            7544

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.91  E-value=2.7e-21  Score=157.43  Aligned_cols=233  Identities=14%  Similarity=0.123  Sum_probs=167.5

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEEeecccCceeEE
Q 023772           30 GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKL-ISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAV  108 (277)
Q Consensus        30 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i  108 (277)
                      ++.++|++.|+.+++||+.+++.+..+..+. .+.++.|+|+++.+ ++++.++.|++||+.+++....+..+.. +..+
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~   78 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELF   78 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEE
Confidence            3578899999999999999998888888664 46789999999876 5677899999999999988777765544 4568


Q ss_pred             EEecCCCEEEE-EeCCCcEEEEeCccCCCcceEeeccccCcEEEEEe--cCCeEEEeecCC-cEEEEEccCCccccc-CC
Q 023772          109 KFNEYSSVVVS-AGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCL--TKTEIIGGSVDG-TVRTFDIRVGRELSD-DL  183 (277)
Q Consensus       109 ~~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~d~-~i~i~d~~~~~~~~~-~~  183 (277)
                      .++|+++.++. ++.|+.+++||++....  +..+.. ...+..+.+  ++..++++..++ .+.+||.++++.... ..
T Consensus        79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~~--~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~  155 (300)
T TIGR03866        79 ALHPNGKILYIANEDDNLVTVIDIETRKV--LAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV  155 (300)
T ss_pred             EECCCCCEEEEEcCCCCeEEEEECCCCeE--EeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc
Confidence            89999987654 45689999999976422  222221 112233444  455577777664 467789877654322 23


Q ss_pred             CCCeeEEEEeCCCCEEEEE-ecCCeEEEEECCCCceEEEEeccc-----cceeeeeeEecCCCceEEe-ecCCCeEEEEE
Q 023772          184 GQPVNCISMSNDGNCILAS-CLDSTLRLLDRSTGELLQEYKGHI-----CKSFKTDCCLTNSDAHVTG-GSEDGYIYFWD  256 (277)
Q Consensus       184 ~~~v~~~~~s~~~~~l~~~-~~d~~i~~wd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~s-gs~d~~i~iwd  256 (277)
                      ...+.+++|+|++++|+++ ..++.+++||+++++.+..+..+.     .......++++|++++++. ...++.+.+||
T Consensus       156 ~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d  235 (300)
T TIGR03866       156 DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVD  235 (300)
T ss_pred             CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEE
Confidence            3456789999999988655 469999999999998877665321     1112234668899987544 45567899999


Q ss_pred             CcCccceeeec
Q 023772          257 LVDASVVAKFK  267 (277)
Q Consensus       257 ~~~~~~~~~~~  267 (277)
                      ..+++++..+.
T Consensus       236 ~~~~~~~~~~~  246 (300)
T TIGR03866       236 AKTYEVLDYLL  246 (300)
T ss_pred             CCCCcEEEEEE
Confidence            99988876654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=2e-22  Score=154.47  Aligned_cols=214  Identities=17%  Similarity=0.278  Sum_probs=171.1

Q ss_pred             eEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCC--EEEEEeCCCcEEEE
Q 023772           52 HIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSS--VVVSAGYDQSLRAW  129 (277)
Q Consensus        52 ~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~--~l~s~~~d~~i~iw  129 (277)
                      ++..+..|.+++++++++  +.++++||.|-+|++||+.....+..+..|.+.|+++.|.+...  .|++|+.||.|.+|
T Consensus        35 ~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw  112 (362)
T KOG0294|consen   35 PLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW  112 (362)
T ss_pred             ccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence            356778999999999996  78999999999999999999888888999999999999988764  89999999999999


Q ss_pred             eCccCCCcceEeeccccCcEEEEEecC--CeEEEeecCCcEEEEEccCCcccc-cCCCCCeeEEEEeCCCCEEEEEecCC
Q 023772          130 DCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVGRELS-DDLGQPVNCISMSNDGNCILASCLDS  206 (277)
Q Consensus       130 d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~d~~i~i~d~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~  206 (277)
                      +....  +....+..|...|+.++..|  ...++-+.|+.++.||+-.++.-. .........+.|+|.|.+++.++.+ 
T Consensus       113 ~~~~W--~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~-  189 (362)
T KOG0294|consen  113 RVGSW--ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN-  189 (362)
T ss_pred             EcCCe--EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc-
Confidence            98654  34455666666677666655  446677889999999998876432 2334445569999999998888776 


Q ss_pred             eEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCcceeE
Q 023772          207 TLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVK  274 (277)
Q Consensus       207 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~  274 (277)
                      .|-+|.+.+.++..+....    ....|+..-++..+++|..|+.|++||.++..+...+.+|...|.
T Consensus       190 ~i~i~q~d~A~v~~~i~~~----~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK  253 (362)
T KOG0294|consen  190 KIDIYQLDNASVFREIENP----KRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVK  253 (362)
T ss_pred             EEEEEecccHhHhhhhhcc----ccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhhee
Confidence            4889999887766554322    123333445677899999999999999999999999999988765

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.91  E-value=3.5e-23  Score=159.43  Aligned_cols=243  Identities=17%  Similarity=0.264  Sum_probs=183.8

Q ss_pred             cCCcEEEEEEeCC----CCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCC-CEEEEEeCCCcEEEEECCC
Q 023772           17 HEGAVLAARFNGD----GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN-SKLISCGGDRQIFYWDVST   91 (277)
Q Consensus        17 H~~~V~~~~~~~~----~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~d~~v~~wd~~~   91 (277)
                      |+..-..++|.-+    ..+++.||.-|.|||.|+.++++.+.+.+|...|+.+.+.|.. ++++++|.|.+|++|++++
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~  167 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT  167 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence            6667777888653    3578889999999999999999999999999999999999975 6889999999999999999


Q ss_pred             CceeEEee---cccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCc----ceE----------------------ee
Q 023772           92 GRVIRKFR---GHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTE----PIQ----------------------II  142 (277)
Q Consensus        92 ~~~~~~~~---~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~----~~~----------------------~~  142 (277)
                      ..++..|.   +|...|.+++|+.++.++++|+-|.++++|++...+..    ...                      ..
T Consensus       168 ~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~  247 (385)
T KOG1034|consen  168 DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTT  247 (385)
T ss_pred             CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccc
Confidence            99988764   79999999999999999999999999999998732110    000                      00


Q ss_pred             ccccCcEEEEEecCCeEEEeecCCcEEEEEcc-CCcccc---cC------------CCCCeeEE--EEeCCCCEEEEEec
Q 023772          143 DSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIR-VGRELS---DD------------LGQPVNCI--SMSNDGNCILASCL  204 (277)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~-~~~~~~---~~------------~~~~v~~~--~~s~~~~~l~~~~~  204 (277)
                      ..|...|.++.+-++.+++-+.++.|..|... ..+.+.   ..            ....+.-+  +|+|-+++|+.|.+
T Consensus       248 diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq  327 (385)
T KOG1034|consen  248 DIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQ  327 (385)
T ss_pred             ccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccC
Confidence            11122222222334557888889999999873 222211   00            01123334  45677899999999


Q ss_pred             CCeEEEEECCCCceE--EEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcC
Q 023772          205 DSTLRLLDRSTGELL--QEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVD  259 (277)
Q Consensus       205 d~~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~  259 (277)
                      .|.+++||++...+.  .++..+.....+...+|+.|+.+|+...+|+.|.-||..+
T Consensus       328 ~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv~  384 (385)
T KOG1034|consen  328 SGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRVS  384 (385)
T ss_pred             CCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEeec
Confidence            999999999876553  3444444455667788999999999999999999998643

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.91  E-value=6.2e-21  Score=154.69  Aligned_cols=254  Identities=19%  Similarity=0.334  Sum_probs=186.4

Q ss_pred             eccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEcCCCCeeEE---EEeccC-ccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 023772           15 KGHEGAVLAARFNGDG-NYCLSCGKDRTIRLWNPHRGIHIK---TYKSHG-REVRDVHVTADNSKLISCGGDRQIFYWDV   89 (277)
Q Consensus        15 ~~H~~~V~~~~~~~~~-~~l~s~s~d~~v~iwd~~~~~~~~---~~~~h~-~~v~~~~~~~~~~~l~t~s~d~~v~~wd~   89 (277)
                      +.-...|..+.|.|.+ ++++++|. +.+..|+.+.+...+   .|+.+. .-|.|+.|.+++ .++||..+|.|.+|+.
T Consensus       197 k~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~eng-dviTgDS~G~i~Iw~~  274 (626)
T KOG2106|consen  197 KTSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENG-DVITGDSGGNILIWSK  274 (626)
T ss_pred             eeccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCC-CEEeecCCceEEEEeC
Confidence            3445677889999955 67778887 899999998875543   455443 469999999876 5679999999999999


Q ss_pred             CCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCc---------ceEe-e-----------------
Q 023772           90 STGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTE---------PIQI-I-----------------  142 (277)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~---------~~~~-~-----------------  142 (277)
                      .+.+..++...|...|.++....+|.++- |+.|+.|..||-.-....         ++.. .                 
T Consensus       275 ~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~  353 (626)
T KOG2106|consen  275 GTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQ  353 (626)
T ss_pred             CCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEE
Confidence            88888877779999999999999986665 999999999994211000         0000 0                 


Q ss_pred             -----------ccccCcEEEEE--ecCCeEEEeecCCcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecCCeEE
Q 023772          143 -----------DSFQDSVMSVC--LTKTEIIGGSVDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLR  209 (277)
Q Consensus       143 -----------~~~~~~~~~~~--~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~  209 (277)
                                 ..|.+....+.  ++.+.+++++.|+.+++|+ ....++......+..|+.|+|.| .++.|...|...
T Consensus       354 Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~  431 (626)
T KOG2106|consen  354 GTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWF  431 (626)
T ss_pred             eeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-CCceeEEEEecCceeEeeccCcc-eEEEeeccceEE
Confidence                       11122222222  3345689999999999999 44344555678899999999999 899999999999


Q ss_pred             EEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccc-eeeeccCc-ceeEee
Q 023772          210 LLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASV-VAKFKAHS-LVVKLL  276 (277)
Q Consensus       210 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~-~~~~~~h~-~~v~~~  276 (277)
                      +.|.++...++....   ........++|+|.++|.||.|+.|++|.+..... ..+...|+ .+|.+|
T Consensus       432 V~d~e~~~lv~~~~d---~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithL  497 (626)
T KOG2106|consen  432 VLDTETQDLVTIHTD---NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHL  497 (626)
T ss_pred             EEecccceeEEEEec---CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEe
Confidence            999998766655443   33455567999999999999999999999877433 33333222 455544

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.90  E-value=8.6e-22  Score=149.96  Aligned_cols=241  Identities=20%  Similarity=0.316  Sum_probs=179.7

Q ss_pred             eccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCC---CCEEEEEeCCCcEEEEECC
Q 023772           15 KGHEGAVLAARFNG-DGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTAD---NSKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        15 ~~H~~~V~~~~~~~-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~t~s~d~~v~~wd~~   90 (277)
                      .+|+-+|.++.|-| |...+.|+|.|.+++|||..+-+....|+- .+.|.+-+++|-   ..+|++|..|-+|++-|+.
T Consensus        98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~  176 (397)
T KOG4283|consen   98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA  176 (397)
T ss_pred             ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence            47889999999998 556888999999999999999877777764 467888888873   5678888899999999999


Q ss_pred             CCceeEEeecccCceeEEEEecCCCE-EEEEeCCCcEEEEeCccCCC----------cceEe---eccccCcEEEEEec-
Q 023772           91 TGRVIRKFRGHESEVNAVKFNEYSSV-VVSAGYDQSLRAWDCRSHST----------EPIQI---IDSFQDSVMSVCLT-  155 (277)
Q Consensus        91 ~~~~~~~~~~h~~~v~~i~~~~~~~~-l~s~~~d~~i~iwd~~~~~~----------~~~~~---~~~~~~~~~~~~~~-  155 (277)
                      +|..-.++.+|+..|.++.|+|..++ |+||+.||.|++||++....          +....   -..|.+.+..+++. 
T Consensus       177 SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS  256 (397)
T KOG4283|consen  177 SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS  256 (397)
T ss_pred             CCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc
Confidence            99999999999999999999998764 78999999999999975311          11111   12344556666665 


Q ss_pred             -CCeEEEeecCCcEEEEEccCCcccccCCCC----CeeEEEE---eCCCCEEEEEecCCeEEEEECCCCceEEEEecccc
Q 023772          156 -KTEIIGGSVDGTVRTFDIRVGRELSDDLGQ----PVNCISM---SNDGNCILASCLDSTLRLLDRSTGELLQEYKGHIC  227 (277)
Q Consensus       156 -~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~----~v~~~~~---s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~  227 (277)
                       +.++++.+.|..+++|+..+++......+.    .-....+   +.+...++---.|+.+.++++..+..++.+..|..
T Consensus       257 d~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k  336 (397)
T KOG4283|consen  257 DARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLK  336 (397)
T ss_pred             cchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecccc
Confidence             455888999999999999888643322111    0011111   22233333334568999999999999999999842


Q ss_pred             ceeeeeeEecCCCceEEeecCCCeEEEEECc
Q 023772          228 KSFKTDCCLTNSDAHVTGGSEDGYIYFWDLV  258 (277)
Q Consensus       228 ~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~  258 (277)
                        .+..+++.|+-.-..+|..|+.|+.|-..
T Consensus       337 --~i~c~~~~~~fq~~~tg~~d~ni~~w~p~  365 (397)
T KOG4283|consen  337 --RINCAAYRPDFEQCFTGDMNGNIYMWSPA  365 (397)
T ss_pred             --eeeEEeecCchhhhhccccCCcccccccc
Confidence              23444556766678899999999999863

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.90  E-value=1.9e-23  Score=178.06  Aligned_cols=250  Identities=19%  Similarity=0.353  Sum_probs=193.2

Q ss_pred             eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 023772           13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTG   92 (277)
Q Consensus        13 ~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~   92 (277)
                      -|.||.++|.|+.|...|.++++|+.|.-++||.++++.++....+|.+.|+.++++.++.+++++|.|..|++|-+.++
T Consensus       185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~  264 (1113)
T KOG0644|consen  185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG  264 (1113)
T ss_pred             HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC
Confidence            36799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCc----ce----------Eeec---------------
Q 023772           93 RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTE----PI----------QIID---------------  143 (277)
Q Consensus        93 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~----~~----------~~~~---------------  143 (277)
                      .++..+.+|++.|++++|+|-.    +.+.||++++||.+-....    +.          ..+.               
T Consensus       265 ~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea  340 (1113)
T KOG0644|consen  265 APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEA  340 (1113)
T ss_pred             chHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCccc
Confidence            9999999999999999999864    7789999999997611000    00          0000               


Q ss_pred             -cccCc--------EEEEEec---CCeEEEeecCCcEEEEEccCCccc--ccCCCCCeeEEEEeCCCCEE-EEEecCCeE
Q 023772          144 -SFQDS--------VMSVCLT---KTEIIGGSVDGTVRTFDIRVGREL--SDDLGQPVNCISMSNDGNCI-LASCLDSTL  208 (277)
Q Consensus       144 -~~~~~--------~~~~~~~---~~~~~~g~~d~~i~i~d~~~~~~~--~~~~~~~v~~~~~s~~~~~l-~~~~~d~~i  208 (277)
                       .+...        ...+...   ....+++-.+-.+.+|++..++..  ...+.+.+..+.++|....+ .+++.||..
T Consensus       341 ~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst  420 (1113)
T KOG0644|consen  341 RNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGST  420 (1113)
T ss_pred             ccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCce
Confidence             00000        0000000   011333444556777888877543  34556789999999977654 567899999


Q ss_pred             EEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeecc
Q 023772          209 RLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKA  268 (277)
Q Consensus       209 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~  268 (277)
                      .|||.-.|.+++.|.-.  .....++.||++|..++..-.-|.++|.....++..++.+.
T Consensus       421 ~iwdi~eg~pik~y~~g--h~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~k~ak~  478 (1113)
T KOG0644|consen  421 IIWDIWEGIPIKHYFIG--HGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQKKAKY  478 (1113)
T ss_pred             EeeecccCCcceeeecc--cceeeccccCCCCceEecCCCCCceEEeccCCCcccccccc
Confidence            99999999888877521  23456788999999988888888999998877766655543

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.6e-21  Score=156.33  Aligned_cols=241  Identities=16%  Similarity=0.312  Sum_probs=181.5

Q ss_pred             CCcEEEEEEeCCCCEEEEEeCCCcEEEEcC--CCCeeEEEEeccCccEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCce
Q 023772           18 EGAVLAARFNGDGNYCLSCGKDRTIRLWNP--HRGIHIKTYKSHGREVRDVHVTADNS-KLISCGGDRQIFYWDVSTGRV   94 (277)
Q Consensus        18 ~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~--~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~d~~v~~wd~~~~~~   94 (277)
                      .++|+++.|+|....|++||.|++++||-+  ++...+..+.-...||.++.|.|+|. .+++++.......||+++.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            478999999999999999999999999964  44455666666678999999999998 889999999999999976542


Q ss_pred             e-------------EEe-----------ec--------------------ccCceeEEEEecCCCEEEEEeCCCcEEEEe
Q 023772           95 I-------------RKF-----------RG--------------------HESEVNAVKFNEYSSVVVSAGYDQSLRAWD  130 (277)
Q Consensus        95 ~-------------~~~-----------~~--------------------h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd  130 (277)
                      .             +.|           .+                    -.+.|.++.|+.+++.|+.++.+|.|.+||
T Consensus       293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~n  372 (514)
T KOG2055|consen  293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWN  372 (514)
T ss_pred             ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEe
Confidence            1             111           01                    235688899999999999999999999999


Q ss_pred             CccCCCcceEeecc-ccCcEEEEEecCCeEEEeecCCcEEEEEccCCcc------ccc--CCCCCeeEEEEeCCCCEEEE
Q 023772          131 CRSHSTEPIQIIDS-FQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRE------LSD--DLGQPVNCISMSNDGNCILA  201 (277)
Q Consensus       131 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~------~~~--~~~~~v~~~~~s~~~~~l~~  201 (277)
                      ++.........-++ ......+.++++.++++|+..|.+.|||..+...      +..  ..-..|++|.|+++++.|+.
T Consensus       373 l~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAi  452 (514)
T KOG2055|consen  373 LRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAI  452 (514)
T ss_pred             cCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhh
Confidence            98764332222111 1122234446677899999999999999764321      111  12357899999999998877


Q ss_pred             Ee--cCCeEEEEECCCCceEEEEeccc-cceeeeeeEecCCCceEEeecCCCeEEEEECc
Q 023772          202 SC--LDSTLRLLDRSTGELLQEYKGHI-CKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLV  258 (277)
Q Consensus       202 ~~--~d~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~  258 (277)
                      +|  .+..+|+..+.+......|.... .-.......|+|.+.++|.|-++|.+.+|.+.
T Consensus       453 aS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  453 ASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             hhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            76  46789999988776666555332 22345667899999999999999999999875

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.90  E-value=2.8e-21  Score=148.88  Aligned_cols=252  Identities=21%  Similarity=0.326  Sum_probs=179.8

Q ss_pred             EEEEEeCCCCEEEEEeCCCcEEEEcCCCC--------e----eEEEEec-cCccEEEEEE-------cCCCCEEEEEeCC
Q 023772           22 LAARFNGDGNYCLSCGKDRTIRLWNPHRG--------I----HIKTYKS-HGREVRDVHV-------TADNSKLISCGGD   81 (277)
Q Consensus        22 ~~~~~~~~~~~l~s~s~d~~v~iwd~~~~--------~----~~~~~~~-h~~~v~~~~~-------~~~~~~l~t~s~d   81 (277)
                      ..+.|+|||.-|++-+.|..+++|++...        .    ....++- ....|...+|       .|+..++++.+.|
T Consensus        53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~  132 (406)
T KOG2919|consen   53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD  132 (406)
T ss_pred             ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence            35889999999999999999999986421        0    0011111 1234555555       3677899999999


Q ss_pred             CcEEEEECCCCceeEEeec--ccCc---eeEEEEecCCCEEEEEeCCCcEEEEeC-ccCCCcceEeec----cccCc-EE
Q 023772           82 RQIFYWDVSTGRVIRKFRG--HESE---VNAVKFNEYSSVVVSAGYDQSLRAWDC-RSHSTEPIQIID----SFQDS-VM  150 (277)
Q Consensus        82 ~~v~~wd~~~~~~~~~~~~--h~~~---v~~i~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~~~----~~~~~-~~  150 (277)
                      .-|++||.-+|+...++++  |..+   -.+++|+|||+.|++ +..+.|++||+ |.+...+.....    ..+.. +.
T Consensus       133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giis  211 (406)
T KOG2919|consen  133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS  211 (406)
T ss_pred             CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee-cccceEEEeeccCCCCCCcchhhhhcccccccceee
Confidence            9999999999998887764  4333   357999999999986 57789999998 443322222111    11223 33


Q ss_pred             EEEecC---CeEEEeecCCcEEEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEec-CCeEEEEECCC-CceEEEEe
Q 023772          151 SVCLTK---TEIIGGSVDGTVRTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCL-DSTLRLLDRST-GELLQEYK  223 (277)
Q Consensus       151 ~~~~~~---~~~~~g~~d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~-d~~i~~wd~~~-~~~~~~~~  223 (277)
                      .+.++|   ..++.|+....+-+|.-...+.+..  .++.-|+.+.|.++|+.|++|+. |..|-.||++. +..+..+.
T Consensus       212 c~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~  291 (406)
T KOG2919|consen  212 CFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALE  291 (406)
T ss_pred             eeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhh
Confidence            445554   3488999988888876655544433  45668999999999999999864 77899999975 44555565


Q ss_pred             cccc-ceeeeeeEecCCCceEEeecCCCeEEEEECcC-ccceeeeccCcceeE
Q 023772          224 GHIC-KSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVD-ASVVAKFKAHSLVVK  274 (277)
Q Consensus       224 ~~~~-~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~-~~~~~~~~~h~~~v~  274 (277)
                      .|.. ....+-.-+.|++.+|++|+.||.|++||+++ |+.+..+..|+..+.
T Consensus       292 rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vN  344 (406)
T KOG2919|consen  292 RHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVN  344 (406)
T ss_pred             hhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccccccc
Confidence            5543 33444455678999999999999999999999 776777777765543

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.89  E-value=1.3e-21  Score=154.21  Aligned_cols=205  Identities=19%  Similarity=0.257  Sum_probs=152.1

Q ss_pred             ceeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEcCCCC-------eeEEEEeccCccEEEEEEcCC-CCEEEEEeCCC
Q 023772           12 NVLKGHEGAVLAARFNG-DGNYCLSCGKDRTIRLWNPHRG-------IHIKTYKSHGREVRDVHVTAD-NSKLISCGGDR   82 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~-~~~~l~s~s~d~~v~iwd~~~~-------~~~~~~~~h~~~v~~~~~~~~-~~~l~t~s~d~   82 (277)
                      ....||+++|+.++|.| +...|||||+|.+|.||.+..+       +.+..+.+|...|.-+.|+|. .+.|+++|.|.
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn  154 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN  154 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence            34579999999999999 6678999999999999986532       456788999999999999985 46789999999


Q ss_pred             cEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEe
Q 023772           83 QIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGG  162 (277)
Q Consensus        83 ~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  162 (277)
                      +|++|++.+|+.+-++. |...|.++.|+.+|.+++|++.|..|++||.+.+........+....+...+-+....+++.
T Consensus       155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tT  233 (472)
T KOG0303|consen  155 TVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTT  233 (472)
T ss_pred             eEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeee
Confidence            99999999999888887 99999999999999999999999999999998765432221111111222222222225544


Q ss_pred             e----cCCcEEEEEccCCccccc----CCCCCeeEEEEeCCCCEE-EEEecCCeEEEEECCCCc
Q 023772          163 S----VDGTVRTFDIRVGRELSD----DLGQPVNCISMSNDGNCI-LASCLDSTLRLLDRSTGE  217 (277)
Q Consensus       163 ~----~d~~i~i~d~~~~~~~~~----~~~~~v~~~~~s~~~~~l-~~~~~d~~i~~wd~~~~~  217 (277)
                      +    .++.+-+||...-++...    ..+.-|.---++++.+.+ ++|-.|+.||.|.+....
T Consensus       234 Gfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  234 GFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             ccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            3    367788999765433211    122234334467776655 566789999999987654

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=3.9e-22  Score=159.09  Aligned_cols=203  Identities=21%  Similarity=0.306  Sum_probs=161.8

Q ss_pred             eccCCcEEEEEEeCC-CCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCC-CEEEEEeCCCcEEEEECCCC
Q 023772           15 KGHEGAVLAARFNGD-GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN-SKLISCGGDRQIFYWDVSTG   92 (277)
Q Consensus        15 ~~H~~~V~~~~~~~~-~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~d~~v~~wd~~~~   92 (277)
                      .+|+++|.++.|+.. .+.|+|||.|.+|++||+.+|++..++..|.+.|.++.|+|.. ..|++|+.|++|++.|.+..
T Consensus       240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~  319 (463)
T KOG0270|consen  240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP  319 (463)
T ss_pred             ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence            479999999999985 4688899999999999999999999999999999999999854 68899999999999999842


Q ss_pred             -ceeEEeecccCceeEEEEecCCC-EEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec---CCeEEEeecCCc
Q 023772           93 -RVIRKFRGHESEVNAVKFNEYSS-VVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT---KTEIIGGSVDGT  167 (277)
Q Consensus        93 -~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~d~~  167 (277)
                       ..-..++ -.+.|-.++|++... .++.+..||+++-+|+|+.. +++.....|.++|..++++   +..+++++.|+.
T Consensus       320 ~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~-~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~  397 (463)
T KOG0270|consen  320 SNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG-KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV  397 (463)
T ss_pred             cccCceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCC-CceeEEEeccCCcceEEecCCCCcceeeccccce
Confidence             2222222 356888899998754 57777899999999999864 6778888899999888876   456899999999


Q ss_pred             EEEEEccCCcccccC----CCCCeeEEEEeCCCC-EEEEEecCCeEEEEECCCCceE
Q 023772          168 VRTFDIRVGRELSDD----LGQPVNCISMSNDGN-CILASCLDSTLRLLDRSTGELL  219 (277)
Q Consensus       168 i~i~d~~~~~~~~~~----~~~~v~~~~~s~~~~-~l~~~~~d~~i~~wd~~~~~~~  219 (277)
                      +++|++.....-...    .-....|.++.|+-. .|+.|+..+.+++||..++..+
T Consensus       398 Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  398 VKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             EEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence            999998644321111    112466777788654 4677888888999999876554

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.88  E-value=2.3e-20  Score=156.43  Aligned_cols=260  Identities=19%  Similarity=0.308  Sum_probs=185.3

Q ss_pred             eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC--eeEEE-----EeccCccEEEEEEcCCCCEEEEEeCCCcEE
Q 023772           13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG--IHIKT-----YKSHGREVRDVHVTADNSKLISCGGDRQIF   85 (277)
Q Consensus        13 ~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~--~~~~~-----~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~   85 (277)
                      .+.||++-|.++.|.|++..|+|+|.|.++.+|...+.  .-...     ..+..+.-....|+|+++.|++-+..|-.+
T Consensus       262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h  341 (764)
T KOG1063|consen  262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH  341 (764)
T ss_pred             hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence            45699999999999999999999999999999976543  33222     222334578899999999999999999999


Q ss_pred             EEECCCC---ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCC----------------------cceE
Q 023772           86 YWDVSTG---RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHST----------------------EPIQ  140 (277)
Q Consensus        86 ~wd~~~~---~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~----------------------~~~~  140 (277)
                      +|-.+..   .......+|...|.+++|.|.|+++++.|.|.+-++|-.-..+.                      +..+
T Consensus       342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~  421 (764)
T KOG1063|consen  342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQ  421 (764)
T ss_pred             EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCce
Confidence            9984332   23344679999999999999999999999999999985320000                      0000


Q ss_pred             --------------------------------------------------------------------------------
Q 023772          141 --------------------------------------------------------------------------------  140 (277)
Q Consensus       141 --------------------------------------------------------------------------------  140 (277)
                                                                                                      
T Consensus       422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~  501 (764)
T KOG1063|consen  422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT  501 (764)
T ss_pred             eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence                                                                                            


Q ss_pred             ------------------eeccccCcEEEEEecCC--eEEEeecC-----CcEEEEEccCCccccc--CCCCCeeEEEEe
Q 023772          141 ------------------IIDSFQDSVMSVCLTKT--EIIGGSVD-----GTVRTFDIRVGRELSD--DLGQPVNCISMS  193 (277)
Q Consensus       141 ------------------~~~~~~~~~~~~~~~~~--~~~~g~~d-----~~i~i~d~~~~~~~~~--~~~~~v~~~~~s  193 (277)
                                        .+.+|.-.+++++.+++  .++++...     --|++|+..+-.+...  .++-.|+.++||
T Consensus       502 ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FS  581 (764)
T KOG1063|consen  502 EPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFS  581 (764)
T ss_pred             CCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEEC
Confidence                              00012223455555433  34443222     2478888765544432  345579999999


Q ss_pred             CCCCEEEEEecCCeEEEEECCCCce-EEE---EeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCc--cceeee-
Q 023772          194 NDGNCILASCLDSTLRLLDRSTGEL-LQE---YKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDA--SVVAKF-  266 (277)
Q Consensus       194 ~~~~~l~~~~~d~~i~~wd~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~--~~~~~~-  266 (277)
                      |||++|++.|.|+++.+|....... ...   .+.|  ...+.+|.++|++.+++|+|.|..|++|...+.  ..+.++ 
T Consensus       582 pdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~H--tRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a  659 (764)
T KOG1063|consen  582 PDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAH--TRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFA  659 (764)
T ss_pred             CCCcEEEEeecCceEEeeeeecccchhhhhcccccc--ceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhc
Confidence            9999999999999999999854321 111   2334  567888999999999999999999999999888  444442 


Q ss_pred             -ccCcceeE
Q 023772          267 -KAHSLVVK  274 (277)
Q Consensus       267 -~~h~~~v~  274 (277)
                       -.++.+|+
T Consensus       660 ~~~~~~aVT  668 (764)
T KOG1063|consen  660 CLKFSLAVT  668 (764)
T ss_pred             hhccCCcee
Confidence             24555554

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.9e-21  Score=156.96  Aligned_cols=265  Identities=22%  Similarity=0.334  Sum_probs=204.1

Q ss_pred             ceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEE-eccCccEEEEEEcCC--CCEEEEEeCCCcEEEEE
Q 023772           12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTY-KSHGREVRDVHVTAD--NSKLISCGGDRQIFYWD   88 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l~t~s~d~~v~~wd   88 (277)
                      ..|..|.|-|+.+.|+..|..|+|+|.|..+.+||...+.....| .+|...|....|.|.  ...|++++.||.+++=.
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~  215 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE  215 (559)
T ss_pred             hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence            457899999999999999999999999999999999988776665 468889999999884  46799999999999887


Q ss_pred             CC-CCce--eEEeecccCceeEEEEecCC-CEEEEEeCCCcEEEEeCccCCCcceEeeccccCc----EEEEEec---CC
Q 023772           89 VS-TGRV--IRKFRGHESEVNAVKFNEYS-SVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDS----VMSVCLT---KT  157 (277)
Q Consensus        89 ~~-~~~~--~~~~~~h~~~v~~i~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~~---~~  157 (277)
                      +. ++.+  ...+..|.++|.-++..|+. ..|.+++.|+.++-+|++...+...........+    ...+..+   ..
T Consensus       216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~  295 (559)
T KOG1334|consen  216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTN  295 (559)
T ss_pred             eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcc
Confidence            64 3333  23466799999999998875 4699999999999999987655443333222222    2333333   34


Q ss_pred             eEEEeecCCcEEEEEccCCccc------c--------cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCC--C-----
Q 023772          158 EIIGGSVDGTVRTFDIRVGREL------S--------DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRST--G-----  216 (277)
Q Consensus       158 ~~~~g~~d~~i~i~d~~~~~~~------~--------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~--~-----  216 (277)
                      ++++|+.|...++||.+.-..-      .        ......|+++.|+.++.-|+++-.|-.|++|+-..  |     
T Consensus       296 ~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~  375 (559)
T KOG1334|consen  296 EFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDP  375 (559)
T ss_pred             ccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCC
Confidence            6999999999999998753211      0        01123689999998888888888999999996432  2     


Q ss_pred             -----ceEEE-Eeccccceeeeee-EecCCCceEEeecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772          217 -----ELLQE-YKGHICKSFKTDC-CLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL  276 (277)
Q Consensus       217 -----~~~~~-~~~~~~~~~~~~~-~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  276 (277)
                           ..++. |+||.+...+.-+ .|.|...|+++||.=|.|.||+-.+++++.-+++...+|.||
T Consensus       376 ~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCL  442 (559)
T KOG1334|consen  376 SSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCL  442 (559)
T ss_pred             CcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEecc
Confidence                 23333 8898655443333 467889999999999999999999999999999877788876

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.87  E-value=4e-21  Score=150.65  Aligned_cols=196  Identities=21%  Similarity=0.418  Sum_probs=155.3

Q ss_pred             ccceeeccCCcEEEEEEeCC-CCEEEEEeCCCcEEEEcCCCCeeE---EEEeccCccEEEEEEcCC-CCEEEEEeCCCcE
Q 023772           10 EANVLKGHEGAVLAARFNGD-GNYCLSCGKDRTIRLWNPHRGIHI---KTYKSHGREVRDVHVTAD-NSKLISCGGDRQI   84 (277)
Q Consensus        10 ~~~~l~~H~~~V~~~~~~~~-~~~l~s~s~d~~v~iwd~~~~~~~---~~~~~h~~~v~~~~~~~~-~~~l~t~s~d~~v   84 (277)
                      +...+.+|.+.=..++|||- ...|+||.--+.|++|...+|...   .-|.+|...|..+.|+|. ...|++||.|++|
T Consensus       203 Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsI  282 (440)
T KOG0302|consen  203 PLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSI  282 (440)
T ss_pred             ceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceE
Confidence            35567899999999999993 235788888899999998887543   346679999999999995 4688999999999


Q ss_pred             EEEECCCC---ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCC-cceEeeccccCcEEEEEecCCe--
Q 023772           85 FYWDVSTG---RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHST-EPIQIIDSFQDSVMSVCLTKTE--  158 (277)
Q Consensus        85 ~~wd~~~~---~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--  158 (277)
                      +|||+..+   .++. .+.|.+.|+.|.|+..-.+|++|+.||+++|||+|+... .++..+..|..+|+++.+.|..  
T Consensus       283 rIWDiRs~~~~~~~~-~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s  361 (440)
T KOG0302|consen  283 RIWDIRSGPKKAAVS-TKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDS  361 (440)
T ss_pred             EEEEecCCCccceeE-eeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCc
Confidence            99999987   3443 488999999999999888999999999999999997654 3677788899999999999754  


Q ss_pred             -EEEeecCCcEEEEEccCCcc--------------c-----ccC-CCCCeeEEEEeCCC-CEEEEEecCC
Q 023772          159 -IIGGSVDGTVRTFDIRVGRE--------------L-----SDD-LGQPVNCISMSNDG-NCILASCLDS  206 (277)
Q Consensus       159 -~~~g~~d~~i~i~d~~~~~~--------------~-----~~~-~~~~v~~~~~s~~~-~~l~~~~~d~  206 (277)
                       +++++.|..|.+||+.....              +     ... -+..+..+.|+++- .++++.+.||
T Consensus       362 ~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG  431 (440)
T KOG0302|consen  362 VIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG  431 (440)
T ss_pred             eEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence             88999999999999853321              0     000 12246667787753 3677777777

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=2.8e-20  Score=143.20  Aligned_cols=202  Identities=20%  Similarity=0.362  Sum_probs=155.6

Q ss_pred             ceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC-
Q 023772           12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS-   90 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~-   90 (277)
                      ..-+.|+-+|-.+....++.+|+||+.|.+|.+|++. |+.+..+......-+.++++|+|++|++++..--|++|.+- 
T Consensus       181 ~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f  259 (420)
T KOG2096|consen  181 EFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIF  259 (420)
T ss_pred             ccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEe
Confidence            3445688888889999999999999999999999998 88888888877888899999999999999999999999873 


Q ss_pred             --CC-----ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccC-----CCcceEe----eccccCcEEEEEe
Q 023772           91 --TG-----RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSH-----STEPIQI----IDSFQDSVMSVCL  154 (277)
Q Consensus        91 --~~-----~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~----~~~~~~~~~~~~~  154 (277)
                        .|     ..+.++++|.+.|...+|+++.+.++|.|.||++++||..-.     .+.....    +.........+.+
T Consensus       260 ~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~l  339 (420)
T KOG2096|consen  260 TKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLEL  339 (420)
T ss_pred             ccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEe
Confidence              22     245678999999999999999999999999999999997521     1110100    0111122234555


Q ss_pred             cCCe-EEEeecCCcEEEEEccCCcccc---cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCC
Q 023772          155 TKTE-IIGGSVDGTVRTFDIRVGRELS---DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRST  215 (277)
Q Consensus       155 ~~~~-~~~g~~d~~i~i~d~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~  215 (277)
                      +|.. ++..+...+|++|..+.++...   ..++..|.+++|+++|++++++ .|+.++++.-..
T Consensus       340 sP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atc-Gdr~vrv~~ntp  403 (420)
T KOG2096|consen  340 SPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATC-GDRYVRVIRNTP  403 (420)
T ss_pred             CCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeee-cceeeeeecCCC
Confidence            5543 3444556689999988876543   3567899999999999988775 578888876433

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=1.7e-19  Score=150.97  Aligned_cols=243  Identities=16%  Similarity=0.271  Sum_probs=185.3

Q ss_pred             ceeeccC-CcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772           12 NVLKGHE-GAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        12 ~~l~~H~-~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~   90 (277)
                      .++.||+ +.|.+++|. ++..|+|.+-+|+|.-||+.+++++..+..-.++|++++.+|.+..++.|..||.++.++..
T Consensus        62 ~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~  140 (691)
T KOG2048|consen   62 PVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIG  140 (691)
T ss_pred             EEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecC
Confidence            3455655 579999999 45577899999999999999999999999889999999999999999999999999999988


Q ss_pred             CCceeE--EeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEee-----cc-ccCcEEEEEe-cCCeEEE
Q 023772           91 TGRVIR--KFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQII-----DS-FQDSVMSVCL-TKTEIIG  161 (277)
Q Consensus        91 ~~~~~~--~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----~~-~~~~~~~~~~-~~~~~~~  161 (277)
                      .++...  .+...+++|.+++|++++..+++|+.||.|++||...++...+...     .. ...-+.++.+ ....+++
T Consensus       141 p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~s  220 (691)
T KOG2048|consen  141 PDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIAS  220 (691)
T ss_pred             CceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEE
Confidence            877643  3555678999999999999999999999999999987654331111     11 1122334433 4566899


Q ss_pred             eecCCcEEEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCce--EE--EEeccccceeeeeeE
Q 023772          162 GSVDGTVRTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGEL--LQ--EYKGHICKSFKTDCC  235 (277)
Q Consensus       162 g~~d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~--~~--~~~~~~~~~~~~~~~  235 (277)
                      |..-|++.+||...+..+..  .+...|.|++..++++++++++.|+.|..|...+++.  +.  ....|....  ...+
T Consensus       221 gDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdv--rs~a  298 (691)
T KOG2048|consen  221 GDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDV--RSMA  298 (691)
T ss_pred             ecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccc--eeee
Confidence            99999999999987765533  4567899999999999999999999998888766533  11  122343322  2233


Q ss_pred             ecCCCceEEeecCCCeEEEEECcC
Q 023772          236 LTNSDAHVTGGSEDGYIYFWDLVD  259 (277)
Q Consensus       236 ~~~~~~~l~sgs~d~~i~iwd~~~  259 (277)
                      ..++  .+++|+.|..+.+=-...
T Consensus       299 v~~~--~l~sgG~d~~l~i~~s~~  320 (691)
T KOG2048|consen  299 VIEN--ALISGGRDFTLAICSSRE  320 (691)
T ss_pred             eecc--eEEecceeeEEEEccccc
Confidence            3333  788899999888766554

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=7.9e-22  Score=173.39  Aligned_cols=244  Identities=14%  Similarity=0.210  Sum_probs=176.9

Q ss_pred             EEEEeCCCC-EEEEE----------eCCCcEEEEcCCC--Ce----eEEEEeccCccEEEEEEcCCCCE----EEEEeCC
Q 023772           23 AARFNGDGN-YCLSC----------GKDRTIRLWNPHR--GI----HIKTYKSHGREVRDVHVTADNSK----LISCGGD   81 (277)
Q Consensus        23 ~~~~~~~~~-~l~s~----------s~d~~v~iwd~~~--~~----~~~~~~~h~~~v~~~~~~~~~~~----l~t~s~d   81 (277)
                      ..+|+|.+. ++++|          |.+.++-||.+..  ..    .+..+. -...-+.++|.+.+..    |+.|..|
T Consensus        11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed   89 (1049)
T KOG0307|consen   11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED   89 (1049)
T ss_pred             eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence            366777664 33332          4456666664432  11    222222 2345678999887665    8888999


Q ss_pred             CcEEEEECCC------CceeEEeecccCceeEEEEecCCC-EEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEe
Q 023772           82 RQIFYWDVST------GRVIRKFRGHESEVNAVKFNEYSS-VVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCL  154 (277)
Q Consensus        82 ~~v~~wd~~~------~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  154 (277)
                      |.|-+||...      ...+.++..|+++|..++|++.+. ++++|+.||.|.|||+......-........+.|..+.+
T Consensus        90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW  169 (1049)
T KOG0307|consen   90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW  169 (1049)
T ss_pred             CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence            9999999864      245778889999999999999865 999999999999999986432111112234567888888


Q ss_pred             cCCe---EEEeecCCcEEEEEccCCcccccCC----CCCeeEEEEeCCC-CEEEEEecCC---eEEEEECCC-CceEEEE
Q 023772          155 TKTE---IIGGSVDGTVRTFDIRVGRELSDDL----GQPVNCISMSNDG-NCILASCLDS---TLRLLDRST-GELLQEY  222 (277)
Q Consensus       155 ~~~~---~~~g~~d~~i~i~d~~~~~~~~~~~----~~~v~~~~~s~~~-~~l~~~~~d~---~i~~wd~~~-~~~~~~~  222 (277)
                      +...   |++++.+|++.|||+|..+.+....    ...+..++|+|+. ..+++++.|.   .|.+||++. ...++.+
T Consensus       170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~  249 (1049)
T KOG0307|consen  170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKIL  249 (1049)
T ss_pred             chhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhh
Confidence            7543   8899999999999999887654321    1357889999986 4566666655   689999875 4677888


Q ss_pred             eccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeecc
Q 023772          223 KGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKA  268 (277)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~  268 (277)
                      .+|.......++|. .|..++++++.|+.|..||.++++++.++..
T Consensus       250 ~~H~~GilslsWc~-~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~  294 (1049)
T KOG0307|consen  250 EGHQRGILSLSWCP-QDPRLLLSSGKDNRIICWNPNTGEVLGELPA  294 (1049)
T ss_pred             cccccceeeeccCC-CCchhhhcccCCCCeeEecCCCceEeeecCC
Confidence            88876555555442 3458899999999999999999999999876

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=8.2e-20  Score=140.40  Aligned_cols=245  Identities=17%  Similarity=0.228  Sum_probs=170.9

Q ss_pred             cccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCC-EEEEEeCCCcEEEE
Q 023772            9 TEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNS-KLISCGGDRQIFYW   87 (277)
Q Consensus         9 ~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~d~~v~~w   87 (277)
                      ....+|.+|-.||.+++||++|+.|+|+|.|..+++||+..|.+++.++- ..+|+.+.|+|... +.+..-.+..-.+-
T Consensus        56 ~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf-~spv~~~q~hp~k~n~~va~~~~~sp~vi  134 (405)
T KOG1273|consen   56 RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF-DSPVWGAQWHPRKRNKCVATIMEESPVVI  134 (405)
T ss_pred             chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc-cCccceeeeccccCCeEEEEEecCCcEEE
Confidence            34678899999999999999999999999999999999999999888874 57999999998554 44444445445555


Q ss_pred             ECCCCceeEEeeccc-----Cce-eEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEE--EecCCeE
Q 023772           88 DVSTGRVIRKFRGHE-----SEV-NAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSV--CLTKTEI  159 (277)
Q Consensus        88 d~~~~~~~~~~~~h~-----~~v-~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  159 (277)
                      ++...  ..++....     +.+ ....|.+.|+++++|...|.+-++|..+........... ...+..+  +..+..+
T Consensus       135 ~~s~~--~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits-~~~IK~I~~s~~g~~l  211 (405)
T KOG1273|consen  135 DFSDP--KHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS-VQAIKQIIVSRKGRFL  211 (405)
T ss_pred             EecCC--ceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeech-heeeeEEEEeccCcEE
Confidence            55432  22221110     111 112477889999999999999999987654332222111 1223333  3446668


Q ss_pred             EEeecCCcEEEEEccCC------ccccc-------CCCCCeeEEEEeCCCCEEEEEec-CCeEEEEECCCCceEEEEecc
Q 023772          160 IGGSVDGTVRTFDIRVG------RELSD-------DLGQPVNCISMSNDGNCILASCL-DSTLRLLDRSTGELLQEYKGH  225 (277)
Q Consensus       160 ~~g~~d~~i~i~d~~~~------~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~  225 (277)
                      +.-+.|+.||.|+++.-      .++..       ....+.++++||.+|.|+.+++. -..++||....|.+++.+.|.
T Consensus       212 iiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~  291 (405)
T KOG1273|consen  212 IINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGT  291 (405)
T ss_pred             EEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCC
Confidence            89999999999998621      11110       01246788999999999888764 447999999999999998876


Q ss_pred             ccceeeeeeEecCCCceEEeecCCCeEEEEECcC
Q 023772          226 ICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVD  259 (277)
Q Consensus       226 ~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~  259 (277)
                      ... .-.+..+.|--..+++- ..|.+++|....
T Consensus       292 kgE-~l~DV~whp~rp~i~si-~sg~v~iw~~~~  323 (405)
T KOG1273|consen  292 KGE-ELLDVNWHPVRPIIASI-ASGVVYIWAVVQ  323 (405)
T ss_pred             chh-heeecccccceeeeeec-cCCceEEEEeec
Confidence            432 23444555554555655 678999998654

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=4.8e-20  Score=158.90  Aligned_cols=197  Identities=15%  Similarity=0.208  Sum_probs=157.0

Q ss_pred             cCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q 023772           17 HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIR   96 (277)
Q Consensus        17 H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~   96 (277)
                      |...|.+++  ..+.++++|+.+++|.+|....++.-..+..-.-+++.++|+.+|++++.||.|-.||+-++.++....
T Consensus        55 ~g~~v~~ia--~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~  132 (933)
T KOG1274|consen   55 SGELVSSIA--CYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEK  132 (933)
T ss_pred             cCceeEEEe--ecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchhe
Confidence            666776665  445699999999999999877665433343345799999999999999999999999999999999999


Q ss_pred             EeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEe-e----ccc-cCcEEEEEecCC--eEEEeecCCcE
Q 023772           97 KFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQI-I----DSF-QDSVMSVCLTKT--EIIGGSVDGTV  168 (277)
Q Consensus        97 ~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~----~~~-~~~~~~~~~~~~--~~~~g~~d~~i  168 (277)
                      .+++|..+|.++.|+|++++|++.+-||+|++||+..+....... +    ... ...+....|.|+  .++....|++|
T Consensus       133 ~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~V  212 (933)
T KOG1274|consen  133 VLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTV  212 (933)
T ss_pred             eecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeE
Confidence            999999999999999999999999999999999997653221100 0    001 223455566665  48889999999


Q ss_pred             EEEEccCCcccc---cCC-CCCeeEEEEeCCCCEEEEEecCCeEEEEECCC
Q 023772          169 RTFDIRVGRELS---DDL-GQPVNCISMSNDGNCILASCLDSTLRLLDRST  215 (277)
Q Consensus       169 ~i~d~~~~~~~~---~~~-~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~  215 (277)
                      ++|+....+...   ... ...+.++.|+|.|+|||+++.||.|-+||.++
T Consensus       213 kvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  213 KVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             EEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            999987655432   222 33488999999999999999999999999987

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=1.1e-21  Score=172.60  Aligned_cols=238  Identities=18%  Similarity=0.245  Sum_probs=181.9

Q ss_pred             cEEEEEEeCCCCE----EEEEeCCCcEEEEcCCC------CeeEEEEeccCccEEEEEEcCCCC-EEEEEeCCCcEEEEE
Q 023772           20 AVLAARFNGDGNY----CLSCGKDRTIRLWNPHR------GIHIKTYKSHGREVRDVHVTADNS-KLISCGGDRQIFYWD   88 (277)
Q Consensus        20 ~V~~~~~~~~~~~----l~s~s~d~~v~iwd~~~------~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~d~~v~~wd   88 (277)
                      .-..++|.+.|..    |+.|.+||.|-+||...      ...+.++..|.++|..++|++... .+++|+.||.|.+||
T Consensus        66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWD  145 (1049)
T KOG0307|consen   66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWD  145 (1049)
T ss_pred             cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEec
Confidence            4567999887665    89999999999999754      234667888999999999999665 899999999999999


Q ss_pred             CCCCceeEEee--cccCceeEEEEecC-CCEEEEEeCCCcEEEEeCccCCCcceEeeccccC--cEEEEEecCC---eEE
Q 023772           89 VSTGRVIRKFR--GHESEVNAVKFNEY-SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQD--SVMSVCLTKT---EII  160 (277)
Q Consensus        89 ~~~~~~~~~~~--~h~~~v~~i~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~  160 (277)
                      +..-+.-.++.  .-.+.|.+++|+.. ...|++++.+|.+.+||++..  +++..+..+..  .+..+.|+++   .++
T Consensus       146 lnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~--~pii~ls~~~~~~~~S~l~WhP~~aTql~  223 (1049)
T KOG0307|consen  146 LNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK--KPIIKLSDTPGRMHCSVLAWHPDHATQLL  223 (1049)
T ss_pred             cCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC--CcccccccCCCccceeeeeeCCCCceeee
Confidence            98755444442  24678999999976 567889999999999999865  23333332222  2445666654   477


Q ss_pred             EeecCC---cEEEEEccCCc---ccccCCCCCeeEEEEeCCC-CEEEEEecCCeEEEEECCCCceEEEEeccccceeeee
Q 023772          161 GGSVDG---TVRTFDIRVGR---ELSDDLGQPVNCISMSNDG-NCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTD  233 (277)
Q Consensus       161 ~g~~d~---~i~i~d~~~~~---~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  233 (277)
                      +++.|.   .|.+||+|...   .+...|..-|.++.|++.+ .++++++.|+.|.+||..+++.+..+....+  ...+
T Consensus       224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n--W~fd  301 (1049)
T KOG0307|consen  224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGN--WCFD  301 (1049)
T ss_pred             eecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCc--ceee
Confidence            777665   48899998543   2334566789999999977 7889999999999999999999998876433  3445


Q ss_pred             eEecCCCc-eEEeecCCCeEEEEECcCcc
Q 023772          234 CCLTNSDA-HVTGGSEDGYIYFWDLVDAS  261 (277)
Q Consensus       234 ~~~~~~~~-~l~sgs~d~~i~iwd~~~~~  261 (277)
                      ..|.|.+. .++.++-||.|.||.+....
T Consensus       302 v~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  302 VQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             eeecCCCcchhhhheeccceeeeeeecCC
Confidence            55666655 67788999999999987754

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=3.4e-20  Score=146.49  Aligned_cols=245  Identities=16%  Similarity=0.161  Sum_probs=181.0

Q ss_pred             eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCC------CeeEEEEe-ccCccEEEEEEcCCCCEEEEEeCCCcEE
Q 023772           13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHR------GIHIKTYK-SHGREVRDVHVTADNSKLISCGGDRQIF   85 (277)
Q Consensus        13 ~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~------~~~~~~~~-~h~~~v~~~~~~~~~~~l~t~s~d~~v~   85 (277)
                      -+.+|.+-|+++.|+.++++|++||.|..+++|++..      .+++.... .|...|.+++|...+.++++|+.+++|.
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI  130 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI  130 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence            3579999999999999999999999999999999643      23444333 3557899999999999999999999999


Q ss_pred             EEECCCCceeEEeec--ccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCc-ceEeeccccCcEEEEEecC---CeE
Q 023772           86 YWDVSTGRVIRKFRG--HESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTE-PIQIIDSFQDSVMSVCLTK---TEI  159 (277)
Q Consensus        86 ~wd~~~~~~~~~~~~--h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~  159 (277)
                      ..|+++.+.+..+..  ..+.|..+..+|..+.+++.+.++.|.+||.+..... ........+.....+.+.|   ..+
T Consensus       131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li  210 (609)
T KOG4227|consen  131 KHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALI  210 (609)
T ss_pred             eeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeE
Confidence            999999998876652  2348999999999999999999999999999864321 2222333344445555554   457


Q ss_pred             EEeecCCcEEEEEccCCccccc------CC---CCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCce-EEEEeccc---
Q 023772          160 IGGSVDGTVRTFDIRVGRELSD------DL---GQPVNCISMSNDGNCILASCLDSTLRLLDRSTGEL-LQEYKGHI---  226 (277)
Q Consensus       160 ~~g~~d~~i~i~d~~~~~~~~~------~~---~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~-~~~~~~~~---  226 (277)
                      ++.+..+-+.+||.+..+....      ..   ........|+|.|+.|++--....=.+||+-+..+ +..+. |.   
T Consensus       211 ~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~G  289 (609)
T KOG4227|consen  211 LVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-HNPNG  289 (609)
T ss_pred             EeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc-CCCCc
Confidence            8888888899999987653211      11   12346788999999988765555556788866433 33332 21   


Q ss_pred             --cceeeeeeEecCCCceEEeecCCCeEEEEECcC
Q 023772          227 --CKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVD  259 (277)
Q Consensus       227 --~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~  259 (277)
                        +.....+|||-.+ .-+++||.+=.|++|.+..
T Consensus       290 Y~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~  323 (609)
T KOG4227|consen  290 YCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPR  323 (609)
T ss_pred             ceeeeeeeeeeeecc-eeeeccCcccceEEEecCC
Confidence              2233445666544 4599999999999999765

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.87  E-value=2.1e-18  Score=145.90  Aligned_cols=256  Identities=29%  Similarity=0.540  Sum_probs=197.6

Q ss_pred             eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCe-eEEEEeccCc-cEEEEEE-cCCCC-EEEEEeC-CCcEEEE
Q 023772           13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI-HIKTYKSHGR-EVRDVHV-TADNS-KLISCGG-DRQIFYW   87 (277)
Q Consensus        13 ~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~-~~~~~~~h~~-~v~~~~~-~~~~~-~l~t~s~-d~~v~~w   87 (277)
                      .+..|...+.++.|.+.+..++.++.|+.+.+|+...+. ....+..+.. .+..+.+ .+++. .++..+. |+.+++|
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  139 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW  139 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence            467899999999999999999999999999999988876 6677776443 7777777 77777 5555455 9999999


Q ss_pred             ECCC-CceeEEeecccCceeEEEEecCCCEEEEEeC-CCcEEEEeCccCCCcceEeeccccCcEEEEEecCCe--EE-Ee
Q 023772           88 DVST-GRVIRKFRGHESEVNAVKFNEYSSVVVSAGY-DQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE--II-GG  162 (277)
Q Consensus        88 d~~~-~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~g  162 (277)
                      |... ......+..|...|..+.+.|++..+++++. |+.+++|+...  ......+..+...+..+.+.+..  ++ ++
T Consensus       140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  217 (466)
T COG2319         140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT--GKPLSTLAGHTDPVSSLAFSPDGGLLIASG  217 (466)
T ss_pred             EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC--CceEEeeccCCCceEEEEEcCCcceEEEEe
Confidence            9998 7888889999999999999999998888886 99999999875  23444555567777777776543  44 44


Q ss_pred             ecCCcEEEEEccCCcccc-cC--CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCce-EEEEeccccceeeeeeEecC
Q 023772          163 SVDGTVRTFDIRVGRELS-DD--LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGEL-LQEYKGHICKSFKTDCCLTN  238 (277)
Q Consensus       163 ~~d~~i~i~d~~~~~~~~-~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~  238 (277)
                      +.|+.+++||...+..+. ..  +.... ...|+|++.++++++.|+.+++|+...... ...+.+|.  .......+.|
T Consensus       218 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~  294 (466)
T COG2319         218 SSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHS--SSVLSVAFSP  294 (466)
T ss_pred             cCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCC--ccEEEEEECC
Confidence            899999999988665544 22  22232 238999998889999999999999986654 44444452  2334446788


Q ss_pred             CCceEEeecCCCeEEEEECcCccceeeec--cCccee
Q 023772          239 SDAHVTGGSEDGYIYFWDLVDASVVAKFK--AHSLVV  273 (277)
Q Consensus       239 ~~~~l~sgs~d~~i~iwd~~~~~~~~~~~--~h~~~v  273 (277)
                      ++..+++++.|+.+++||..+........  .|...+
T Consensus       295 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (466)
T COG2319         295 DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPV  331 (466)
T ss_pred             CCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCce
Confidence            77788878889999999999888777766  676533

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.87  E-value=6.1e-21  Score=154.53  Aligned_cols=212  Identities=14%  Similarity=0.250  Sum_probs=169.7

Q ss_pred             EEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecc
Q 023772           22 LAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGH  101 (277)
Q Consensus        22 ~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h  101 (277)
                      .|+.......|+++||..+.|+|||++...+.+.++.|...|+++.+.....+|++++..|.|.+..+.++..-.+|..-
T Consensus        83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~  162 (673)
T KOG4378|consen   83 FCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTID  162 (673)
T ss_pred             HHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecC
Confidence            34444455589999999999999999988888889999999999999999999999999999999999998887777644


Q ss_pred             -cCceeEEEEecCCC-EEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC---eEEEeecCCcEEEEEccCC
Q 023772          102 -ESEVNAVKFNEYSS-VVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT---EIIGGSVDGTVRTFDIRVG  176 (277)
Q Consensus       102 -~~~v~~i~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~d~~i~i~d~~~~  176 (277)
                       ...|.-+.|++..+ +|.+++.+|.|.+||.....+ .......|..++..+++++.   .+++.+.|+.|.+||.+..
T Consensus       163 sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp-~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~  241 (673)
T KOG4378|consen  163 SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP-IFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ  241 (673)
T ss_pred             CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc-ccchhhhccCCcCcceecCCccceEEEecccceEEEeecccc
Confidence             34566889998765 577889999999999876433 22233456667777777654   3888999999999999876


Q ss_pred             ccccc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCC-CceEEEEeccccceeeeee
Q 023772          177 RELSD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRST-GELLQEYKGHICKSFKTDC  234 (277)
Q Consensus       177 ~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~  234 (277)
                      +.... ...+|...++|+++|.+|++|...|.|..||++. ..++.....|...+..+.+
T Consensus       242 ~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vaf  301 (673)
T KOG4378|consen  242 ASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAF  301 (673)
T ss_pred             cccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEe
Confidence            54433 3567999999999999999999999999999976 4567777777655443333

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.87  E-value=1.1e-20  Score=151.35  Aligned_cols=247  Identities=17%  Similarity=0.247  Sum_probs=183.5

Q ss_pred             ceeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEcCCCCeeE--EEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023772           12 NVLKGHEGAVLAARFNG-DGNYCLSCGKDRTIRLWNPHRGIHI--KTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWD   88 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~-~~~~l~s~s~d~~v~iwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd   88 (277)
                      ..+..|.++|.++.|+| +...+++.|.||++|.=|.+.+..-  .....-.....++.|+.+...++.+..=|...+||
T Consensus       228 ~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD  307 (498)
T KOG4328|consen  228 YLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVID  307 (498)
T ss_pred             EEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEE
Confidence            44678999999999999 4578899999999999998875432  22222344567888888888888888878999999


Q ss_pred             CCCCce-eEEeecccCceeEEEEecCC-CEEEEEeCCCcEEEEeCccCCCcc--eEeeccccCcEEEEEecCCe--EEEe
Q 023772           89 VSTGRV-IRKFRGHESEVNAVKFNEYS-SVVVSAGYDQSLRAWDCRSHSTEP--IQIIDSFQDSVMSVCLTKTE--IIGG  162 (277)
Q Consensus        89 ~~~~~~-~~~~~~h~~~v~~i~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~g  162 (277)
                      +.++.. ...+.-|...|++++++|.. .+++|+|.|++.+|||++.-..++  +.....|...|.+..++|..  +++.
T Consensus       308 ~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT  387 (498)
T KOG4328|consen  308 LRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTT  387 (498)
T ss_pred             eecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEee
Confidence            987653 55667788899999999974 579999999999999998755444  23344567778877777643  9999


Q ss_pred             ecCCcEEEEEcc---CC-c---ccccC--CCC--CeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceee
Q 023772          163 SVDGTVRTFDIR---VG-R---ELSDD--LGQ--PVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFK  231 (277)
Q Consensus       163 ~~d~~i~i~d~~---~~-~---~~~~~--~~~--~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~  231 (277)
                      +.|..|++||-.   .. .   .+...  ++.  ......|.|+.+++++|-.-+.|-++|-..++.+..+.+.......
T Consensus       388 ~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~  467 (498)
T KOG4328|consen  388 CQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIP  467 (498)
T ss_pred             ccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccc
Confidence            999999999974   11 1   11111  111  2334689999999999999999999999988877766554332223


Q ss_pred             eeeEecCCCc-eEEeecCCCeEEEEECc
Q 023772          232 TDCCLTNSDA-HVTGGSEDGYIYFWDLV  258 (277)
Q Consensus       232 ~~~~~~~~~~-~l~sgs~d~~i~iwd~~  258 (277)
                      ....+.|-+. +++.|...|.|++|--+
T Consensus       468 ~vn~~HP~~~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  468 SVNEFHPMRDTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             cceeecccccceeccCCccceEEEEecC
Confidence            3335677555 67777889999998654

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=4.8e-19  Score=135.71  Aligned_cols=200  Identities=18%  Similarity=0.330  Sum_probs=147.3

Q ss_pred             eccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC----CceeEEeecccCceeEEEEe--cCCCEEEEEeCCCcEEEEe
Q 023772           57 KSHGREVRDVHVTADNSKLISCGGDRQIFYWDVST----GRVIRKFRGHESEVNAVKFN--EYSSVVVSAGYDQSLRAWD  130 (277)
Q Consensus        57 ~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~----~~~~~~~~~h~~~v~~i~~~--~~~~~l~s~~~d~~i~iwd  130 (277)
                      .+|..-|+++.|.+-|++++|||.|++++|||.+.    ..+-..++.|.+.|..+.|.  +.|+.+++|+.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            35788899999999999999999999999999643    35677889999999999995  3599999999999999997


Q ss_pred             CccCCC-------cceEeeccccCcEEEEEecCCe----EEEeecCCcEEEEEccCCccc---------c------cCCC
Q 023772          131 CRSHST-------EPIQIIDSFQDSVMSVCLTKTE----IIGGSVDGTVRTFDIRVGREL---------S------DDLG  184 (277)
Q Consensus       131 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~----~~~g~~d~~i~i~d~~~~~~~---------~------~~~~  184 (277)
                      -.....       ....++......++.+.|.|.+    +++++.||++|||+......+         .      ....
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~  169 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK  169 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence            532111       1223344455678888888754    889999999999987533211         1      1233


Q ss_pred             CCeeEEEEeCC---CCEEEEEecC-----CeEEEEECCCC----ceEEEEeccccceeeeeeEecCC----CceEEeecC
Q 023772          185 QPVNCISMSND---GNCILASCLD-----STLRLLDRSTG----ELLQEYKGHICKSFKTDCCLTNS----DAHVTGGSE  248 (277)
Q Consensus       185 ~~v~~~~~s~~---~~~l~~~~~d-----~~i~~wd~~~~----~~~~~~~~~~~~~~~~~~~~~~~----~~~l~sgs~  248 (277)
                      .+-.|+.|+|.   ..+|+.|+.+     +.++||....+    ..+.++.+|...  +.+.++.|.    ...||+++.
T Consensus       170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dp--I~di~wAPn~Gr~y~~lAvA~k  247 (361)
T KOG2445|consen  170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDP--IRDISWAPNIGRSYHLLAVATK  247 (361)
T ss_pred             CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCc--ceeeeeccccCCceeeEEEeec
Confidence            56788889874   3567777765     37888887543    234566677654  455566664    346999999


Q ss_pred             CCeEEEEECcC
Q 023772          249 DGYIYFWDLVD  259 (277)
Q Consensus       249 d~~i~iwd~~~  259 (277)
                      || |+||++..
T Consensus       248 Dg-v~I~~v~~  257 (361)
T KOG2445|consen  248 DG-VRIFKVKV  257 (361)
T ss_pred             Cc-EEEEEEee
Confidence            99 99999884

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.85  E-value=1.4e-20  Score=145.21  Aligned_cols=203  Identities=23%  Similarity=0.422  Sum_probs=151.4

Q ss_pred             ccceeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEcCCCCeeEEEE---eccCccEEEEEEcCCCCEEEEEeCCCcEE
Q 023772           10 EANVLKGHEGAVLAARFNGDG-NYCLSCGKDRTIRLWNPHRGIHIKTY---KSHGREVRDVHVTADNSKLISCGGDRQIF   85 (277)
Q Consensus        10 ~~~~l~~H~~~V~~~~~~~~~-~~l~s~s~d~~v~iwd~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~t~s~d~~v~   85 (277)
                      ....+.||.++|+.+.|.|+. +++++||+|.+||+||+++..++..|   ++|...|.+++|++++.+|+++|.|.+++
T Consensus       127 ~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk  206 (385)
T KOG1034|consen  127 CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLK  206 (385)
T ss_pred             hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEE
Confidence            345678999999999999965 68889999999999999999998876   56999999999999999999999999999


Q ss_pred             EEECCCCce------eE----------------------EeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCcc-CCC
Q 023772           86 YWDVSTGRV------IR----------------------KFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRS-HST  136 (277)
Q Consensus        86 ~wd~~~~~~------~~----------------------~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~-~~~  136 (277)
                      +|++...+.      ..                      +-.-|+..|-++.|-  ++++++=|-++.|..|.+.. .+.
T Consensus       207 ~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~  284 (385)
T KOG1034|consen  207 LWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEES  284 (385)
T ss_pred             EEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhh
Confidence            999973321      10                      112255555555554  57899999999999998721 100


Q ss_pred             -------c-ceEee---ccccCcEEEEEe--c--CCeEEEeecCCcEEEEEccCCcccc------cCCCCCeeEEEEeCC
Q 023772          137 -------E-PIQII---DSFQDSVMSVCL--T--KTEIIGGSVDGTVRTFDIRVGRELS------DDLGQPVNCISMSND  195 (277)
Q Consensus       137 -------~-~~~~~---~~~~~~~~~~~~--~--~~~~~~g~~d~~i~i~d~~~~~~~~------~~~~~~v~~~~~s~~  195 (277)
                             + ...++   .-....+..+.+  +  ...++.|...|.+.+||++......      ...+..|+..+|+.+
T Consensus       285 ~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~d  364 (385)
T KOG1034|consen  285 IHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRD  364 (385)
T ss_pred             hhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeeccc
Confidence                   0 11111   111223333333  3  3448899999999999998765421      123457899999999


Q ss_pred             CCEEEEEecCCeEEEEECC
Q 023772          196 GNCILASCLDSTLRLLDRS  214 (277)
Q Consensus       196 ~~~l~~~~~d~~i~~wd~~  214 (277)
                      |..|+..+.|++|.-||..
T Consensus       365 gs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  365 GSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             CcEEEEEeCCCcEEEEEee
Confidence            9999999999999999864

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.85  E-value=5.6e-19  Score=148.06  Aligned_cols=236  Identities=17%  Similarity=0.281  Sum_probs=179.2

Q ss_pred             cEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-----
Q 023772           20 AVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRV-----   94 (277)
Q Consensus        20 ~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~-----   94 (277)
                      .|..++|.|||..|+-+. +..+.+||+..|..+.++++|...|.+++|+.+|+++++|+.|+.|-+|...-...     
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH   92 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSH   92 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeecc
Confidence            789999999999887754 45899999999999999999999999999999999999999999999998642211     


Q ss_pred             ---eEE--ee-------------------------cc--cCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEee
Q 023772           95 ---IRK--FR-------------------------GH--ESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQII  142 (277)
Q Consensus        95 ---~~~--~~-------------------------~h--~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  142 (277)
                         ++.  |.                         .|  ..++.+++|..||++++-|-.||+|.+-+-.......++..
T Consensus        93 ~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rp  172 (1081)
T KOG1538|consen   93 NDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERP  172 (1081)
T ss_pred             CCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCC
Confidence               111  10                         12  35678888899999999999999999886443222233333


Q ss_pred             ccccCcEEEEEecCC-------eEEEeecCCcEEEEEccCCcccc--cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEEC
Q 023772          143 DSFQDSVMSVCLTKT-------EIIGGSVDGTVRTFDIRVGRELS--DDLGQPVNCISMSNDGNCILASCLDSTLRLLDR  213 (277)
Q Consensus       143 ~~~~~~~~~~~~~~~-------~~~~g~~d~~i~i~d~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~  213 (277)
                      .+...++.++.+++.       -+++.....++.+|.+.. +.+.  ...+-...|+.+-++|.+++.|+.|+.+++|-.
T Consensus       173 gg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG-~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR  251 (1081)
T KOG1538|consen  173 GGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG-KQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTR  251 (1081)
T ss_pred             CCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc-eeecccccCCCCchhheeccCCcEEEEccCCCceEEEee
Confidence            446677888888653       267778888888888753 2222  223446788999999999999999999999987


Q ss_pred             CCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCc
Q 023772          214 STGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDA  260 (277)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~  260 (277)
                      . |-.+.+....  ..++......|++.+++.|+.||+|--|++.-.
T Consensus       252 ~-GvrLGTvg~~--D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fS  295 (1081)
T KOG1538|consen  252 D-GVRLGTVGEQ--DSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFS  295 (1081)
T ss_pred             c-CeEEeecccc--ceeEEEEEEccCCceEEEEEccCeeehhhhHHh
Confidence            5 4444444332  234555667899999999999999999997543

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.85  E-value=4.4e-20  Score=138.62  Aligned_cols=248  Identities=14%  Similarity=0.196  Sum_probs=179.9

Q ss_pred             ccccccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEe-ccCccEEEEEEcCCCCEEEEEeCCCcE
Q 023772            6 LPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYK-SHGREVRDVHVTADNSKLISCGGDRQI   84 (277)
Q Consensus         6 ~~~~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~t~s~d~~v   84 (277)
                      +|+++..+|+.|.+.|+++.|..+++ |++|..-|.|++|++.+.+....++ .|...|+.+...|+ ..+.+=+.|..+
T Consensus         2 ~pPdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L   79 (323)
T KOG0322|consen    2 VPPDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLL   79 (323)
T ss_pred             CCCCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceE
Confidence            46677888999999999999998875 8899999999999999988888888 67778999998887 678888999999


Q ss_pred             EEEECCCCce--------------eEEee---------------------------------------cccCceeEEEEe
Q 023772           85 FYWDVSTGRV--------------IRKFR---------------------------------------GHESEVNAVKFN  111 (277)
Q Consensus        85 ~~wd~~~~~~--------------~~~~~---------------------------------------~h~~~v~~i~~~  111 (277)
                      .+|++..+.-              ..++.                                       +..+.+.+..+.
T Consensus        80 ~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~  159 (323)
T KOG0322|consen   80 ILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD  159 (323)
T ss_pred             EEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence            9999865221              11110                                       011222222211


Q ss_pred             c-CC--CEEEEEeCCCcEEEEeCccCCCc--------ceEeeccccCcEEEEEecCC--eEEEeecCCcEEEEEccCC--
Q 023772          112 E-YS--SVVVSAGYDQSLRAWDCRSHSTE--------PIQIIDSFQDSVMSVCLTKT--EIIGGSVDGTVRTFDIRVG--  176 (277)
Q Consensus       112 ~-~~--~~l~s~~~d~~i~iwd~~~~~~~--------~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~i~d~~~~--  176 (277)
                      . .+  -+++.|-.+|.+.+||+..+...        -......+..++.++...+.  .=++|+.+..+..|.+...  
T Consensus       160 ~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~g  239 (323)
T KOG0322|consen  160 HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTG  239 (323)
T ss_pred             ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccC
Confidence            1 11  14667778999999999864210        01112345666777766532  2345667777888887533  


Q ss_pred             cc-cc---cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeE
Q 023772          177 RE-LS---DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYI  252 (277)
Q Consensus       177 ~~-~~---~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i  252 (277)
                      .. +.   ....--++.+.+-||++.+++++.|+.||+|+.++.+++..++-|..  -....+|+|+...+|++|+|+.|
T Consensus       240 slq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa--gvn~vAfspd~~lmAaaskD~rI  317 (323)
T KOG0322|consen  240 SLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA--GVNAVAFSPDCELMAAASKDARI  317 (323)
T ss_pred             cccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc--ceeEEEeCCCCchhhhccCCceE
Confidence            11 11   11223477788899999999999999999999999999998888853  34667899998999999999999


Q ss_pred             EEEEC
Q 023772          253 YFWDL  257 (277)
Q Consensus       253 ~iwd~  257 (277)
                      -+|++
T Consensus       318 SLWkL  322 (323)
T KOG0322|consen  318 SLWKL  322 (323)
T ss_pred             Eeeec
Confidence            99986

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.85  E-value=1.3e-17  Score=140.93  Aligned_cols=253  Identities=28%  Similarity=0.494  Sum_probs=188.8

Q ss_pred             cceeeccC-CcEEEEEE-eCCCC-EEEEEeC-CCcEEEEcCCC-CeeEEEEeccCccEEEEEEcCCCCEEEEEeC-CCcE
Q 023772           11 ANVLKGHE-GAVLAARF-NGDGN-YCLSCGK-DRTIRLWNPHR-GIHIKTYKSHGREVRDVHVTADNSKLISCGG-DRQI   84 (277)
Q Consensus        11 ~~~l~~H~-~~V~~~~~-~~~~~-~l~s~s~-d~~v~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~-d~~v   84 (277)
                      ...+.++. ..+..+.+ .+++. .++..+. |+.+++|+... ......+..|...|..+.|+|++..+++++. |+.+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  180 (466)
T COG2319         101 IKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTI  180 (466)
T ss_pred             EEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCce
Confidence            33445533 37777777 78887 5555455 99999999987 7788899999999999999999998888885 9999


Q ss_pred             EEEECCCCceeEEeecccCceeEEEEecCCC-EEEEEeCCCcEEEEeCccCCCcceE-eeccccCc-EEEEEecCCeEEE
Q 023772           85 FYWDVSTGRVIRKFRGHESEVNAVKFNEYSS-VVVSAGYDQSLRAWDCRSHSTEPIQ-IIDSFQDS-VMSVCLTKTEIIG  161 (277)
Q Consensus        85 ~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~  161 (277)
                      ++|++..+..+..+..|...|.++++.|++. .+++++.|+.+++||....  .... .+..+... +..+......+++
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (466)
T COG2319         181 KLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG--KLLRSTLSGHSDSVVSSFSPDGSLLAS  258 (466)
T ss_pred             EEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC--cEEeeecCCCCcceeEeECCCCCEEEE
Confidence            9999999888889999999999999999987 6666699999999987632  2222 34444444 3334444456778


Q ss_pred             eecCCcEEEEEccCCcc-cc--cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEe--ccccceeeeeeEe
Q 023772          162 GSVDGTVRTFDIRVGRE-LS--DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYK--GHICKSFKTDCCL  236 (277)
Q Consensus       162 g~~d~~i~i~d~~~~~~-~~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~--~~~~~~~~~~~~~  236 (277)
                      ++.|+.+++||++.... ..  ..+...+.++.|+|++..+++++.|+.+++||..+........  .|....  ....+
T Consensus       259 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  336 (466)
T COG2319         259 GSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPV--SSLSF  336 (466)
T ss_pred             ecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCce--EEEEE
Confidence            99999999999986553 21  2345789999999988888889999999999998877666655  554422  22333


Q ss_pred             cCCCceEEee-cCCCeEEEEECcCccceeeec
Q 023772          237 TNSDAHVTGG-SEDGYIYFWDLVDASVVAKFK  267 (277)
Q Consensus       237 ~~~~~~l~sg-s~d~~i~iwd~~~~~~~~~~~  267 (277)
                      .+++..++.+ ..|+.+++|+...........
T Consensus       337 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  368 (466)
T COG2319         337 SPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE  368 (466)
T ss_pred             CCCCCEEEEeecCCCcEEeeecCCCceeEEec
Confidence            3442444444 788999999999887333333

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=5.6e-20  Score=150.74  Aligned_cols=213  Identities=20%  Similarity=0.303  Sum_probs=158.5

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEE-eccCccEEEEEEcC--CCCEEEEEeCCCcEEEE
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTY-KSHGREVRDVHVTA--DNSKLISCGGDRQIFYW   87 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~l~t~s~d~~v~~w   87 (277)
                      ...|.||++-|+|+.|+.+|.+|+|||.|-.+.|||.-..+.+..+ .+|...|.++.|-|  ++..++||+.|..|+++
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            3457899999999999999999999999999999998877766655 47999999999998  45678999999999999


Q ss_pred             ECCC----------CceeEEeecccCceeEEEEecCC-CEEEEEeCCCcEEEEeCccCCC-cceE----ee---ccccCc
Q 023772           88 DVST----------GRVIRKFRGHESEVNAVKFNEYS-SVVVSAGYDQSLRAWDCRSHST-EPIQ----II---DSFQDS  148 (277)
Q Consensus        88 d~~~----------~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~~~d~~i~iwd~~~~~~-~~~~----~~---~~~~~~  148 (277)
                      |+..          .+..+.+..|...|..++..|.+ +.+-+++.||+++-+|++.... .+-.    .+   ....-.
T Consensus       123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie  202 (758)
T KOG1310|consen  123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE  202 (758)
T ss_pred             ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence            9974          23456678899999999999987 7899999999999999986321 1100    00   000112


Q ss_pred             EEEEEec---CCeEEEeecCCcEEEEEccCCcc------------------ccc---CC---C-----CC---eeEEEEe
Q 023772          149 VMSVCLT---KTEIIGGSVDGTVRTFDIRVGRE------------------LSD---DL---G-----QP---VNCISMS  193 (277)
Q Consensus       149 ~~~~~~~---~~~~~~g~~d~~i~i~d~~~~~~------------------~~~---~~---~-----~~---v~~~~~s  193 (277)
                      ..++..+   +..+++|+.|-..++||.|....                  +..   .+   .     ..   .+-++|+
T Consensus       203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfn  282 (758)
T KOG1310|consen  203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFN  282 (758)
T ss_pred             eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEEC
Confidence            2233333   45699999999999999543211                  000   00   0     11   3446899


Q ss_pred             CCCCEEEEEecCCeEEEEECCCCceEEEEe
Q 023772          194 NDGNCILASCLDSTLRLLDRSTGELLQEYK  223 (277)
Q Consensus       194 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~  223 (277)
                      |+|.-|+..-....++++|+..++....|.
T Consensus       283 pNGtElLvs~~gEhVYlfdvn~~~~~~~y~  312 (758)
T KOG1310|consen  283 PNGTELLVSWGGEHVYLFDVNEDKSPTPYF  312 (758)
T ss_pred             CCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence            999888887666789999998776655443

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.84  E-value=1.2e-19  Score=152.30  Aligned_cols=203  Identities=18%  Similarity=0.265  Sum_probs=156.9

Q ss_pred             ceeeccCCcEEEEEEeCCCCEEEEEeCC-----CcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEE
Q 023772           12 NVLKGHEGAVLAARFNGDGNYCLSCGKD-----RTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFY   86 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~d-----~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~   86 (277)
                      ..|-||.-.|.+++.+|+|+++||++..     ..|++|+..+-.....+.+|+-.|+.++|+|++++|+++|.|+++.+
T Consensus       519 ~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl  598 (764)
T KOG1063|consen  519 HKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSL  598 (764)
T ss_pred             HHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEe
Confidence            4467999999999999999999998765     45799998887778889999999999999999999999999999999


Q ss_pred             EECCCCc----eeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceE--eeccccCcEEEEEecC----
Q 023772           87 WDVSTGR----VIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQ--IIDSFQDSVMSVCLTK----  156 (277)
Q Consensus        87 wd~~~~~----~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~----  156 (277)
                      |......    .....+.|+.-|++++|+|++.+++|+|.|.+|++|.........+.  ....+...++++.+.+    
T Consensus       599 ~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~  678 (764)
T KOG1063|consen  599 YEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHN  678 (764)
T ss_pred             eeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccc
Confidence            9875432    12346789999999999999999999999999999987654212111  2233455666666533    


Q ss_pred             ---CeEEEeecCCcEEEEEccCC-cccc-------c------CCCCCeeEEEEeCC----------CCEEEEEecCCeEE
Q 023772          157 ---TEIIGGSVDGTVRTFDIRVG-RELS-------D------DLGQPVNCISMSND----------GNCILASCLDSTLR  209 (277)
Q Consensus       157 ---~~~~~g~~d~~i~i~d~~~~-~~~~-------~------~~~~~v~~~~~s~~----------~~~l~~~~~d~~i~  209 (277)
                         ..++.|...|.|.+|..... ++..       .      .+...|+.+.|.|.          ...|++|+.|..+|
T Consensus       679 e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vr  758 (764)
T KOG1063|consen  679 EKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVR  758 (764)
T ss_pred             cccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeE
Confidence               13678889999999985411 1110       0      12246888999975          23468999999999


Q ss_pred             EEECC
Q 023772          210 LLDRS  214 (277)
Q Consensus       210 ~wd~~  214 (277)
                      ++++.
T Consensus       759 i~nv~  763 (764)
T KOG1063|consen  759 IFNVD  763 (764)
T ss_pred             Eeecc
Confidence            99874

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=7.7e-19  Score=141.13  Aligned_cols=199  Identities=14%  Similarity=0.216  Sum_probs=162.3

Q ss_pred             CccEEEEEEcCCCCEEEEEeCCCcEEEEECCC--CceeEEeecccCceeEEEEecCCC-EEEEEeCCCcEEEEeCccCCC
Q 023772           60 GREVRDVHVTADNSKLISCGGDRQIFYWDVST--GRVIRKFRGHESEVNAVKFNEYSS-VVVSAGYDQSLRAWDCRSHST  136 (277)
Q Consensus        60 ~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~--~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~d~~i~iwd~~~~~~  136 (277)
                      .+.|+++.|+|.-..+++++.|+++++|.+..  ...++++.--..||....|.|+|. .+++++.-.....||+.+...
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            36899999999999999999999999998864  456777777788999999999999 899999999999999987654


Q ss_pred             cceEeecccc-CcE--EEEEecCCeEEEeecCCcEEEEEccCCccccc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEE
Q 023772          137 EPIQIIDSFQ-DSV--MSVCLTKTEIIGGSVDGTVRTFDIRVGRELSD-DLGQPVNCISMSNDGNCILASCLDSTLRLLD  212 (277)
Q Consensus       137 ~~~~~~~~~~-~~~--~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd  212 (277)
                      .++....+.. ..+  ..++...+.++..+..|.|.+-...+++.+.. .....+..++|+.+++.|++++.+|.|++||
T Consensus       293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~n  372 (514)
T KOG2055|consen  293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWN  372 (514)
T ss_pred             ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEe
Confidence            4333332222 122  33445566788899999999988877765544 3457899999999999999999999999999


Q ss_pred             CCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcC
Q 023772          213 RSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVD  259 (277)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~  259 (277)
                      +++..+++.|.... ....+..|.++++.|+|+||..|.|.|||.++
T Consensus       373 l~~~~~~~rf~D~G-~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s  418 (514)
T KOG2055|consen  373 LRQNSCLHRFVDDG-SVHGTSLCISLNGSYLATGSDSGIVNIYDGNS  418 (514)
T ss_pred             cCCcceEEEEeecC-ccceeeeeecCCCceEEeccCcceEEEeccch
Confidence            99999999887653 34567788999999999999999999999665

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=1.3e-18  Score=134.99  Aligned_cols=186  Identities=19%  Similarity=0.323  Sum_probs=143.4

Q ss_pred             CEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCce--eEEeeccc-Cce
Q 023772           31 NYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTA--DNSKLISCGGDRQIFYWDVSTGRV--IRKFRGHE-SEV  105 (277)
Q Consensus        31 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~s~d~~v~~wd~~~~~~--~~~~~~h~-~~v  105 (277)
                      ..++++-..|+||+||..++..+..|+++...++.+.|..  ....+.+++.||+|++||+.....  ...+.++. .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            4577777789999999999999999999999999999987  356789999999999999987543  44556665 566


Q ss_pred             eEEEEecCCCEEEEEe----CCCcEEEEeCccCCCcceEeeccccCcEEEEEecC---CeEEEeecCCcEEEEEccCCcc
Q 023772          106 NAVKFNEYSSVVVSAG----YDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK---TEIIGGSVDGTVRTFDIRVGRE  178 (277)
Q Consensus       106 ~~i~~~~~~~~l~s~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~d~~i~i~d~~~~~~  178 (277)
                      .+++.+..++.+++|.    .|-.+.+||.|..+...-...+.|.+-|+.+.|.|   +.+++|+.||.+.+||+....+
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E  200 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE  200 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence            7777777788888775    47889999998754422234567888888888864   5699999999999999976532


Q ss_pred             cc-----cCCCCCeeEEEEeCCC-CEEEEEecCCeEEEEECCCC
Q 023772          179 LS-----DDLGQPVNCISMSNDG-NCILASCLDSTLRLLDRSTG  216 (277)
Q Consensus       179 ~~-----~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~wd~~~~  216 (277)
                      -.     -.++..|.++.|..++ +.|.+-+...+..+|++..+
T Consensus       201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~  244 (376)
T KOG1188|consen  201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDG  244 (376)
T ss_pred             hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCC
Confidence            11     1245678888888776 34667777888888887544

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=2.1e-17  Score=123.03  Aligned_cols=232  Identities=15%  Similarity=0.309  Sum_probs=157.4

Q ss_pred             eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCee------EE--EEe-----ccCccEEEEEEcCCCCEEEEEeC
Q 023772           14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIH------IK--TYK-----SHGREVRDVHVTADNSKLISCGG   80 (277)
Q Consensus        14 l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~------~~--~~~-----~h~~~v~~~~~~~~~~~l~t~s~   80 (277)
                      .++|+++|..+.|.  ..+|++|+. |.|+-|..+....      +-  ...     ..-..|+++.+.|..+-+++++.
T Consensus        58 eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgG  134 (325)
T KOG0649|consen   58 EQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGG  134 (325)
T ss_pred             ccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecC
Confidence            47999999999999  457888775 9999997543111      00  111     12346899999999888888889


Q ss_pred             CCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeecccc----------CcEE
Q 023772           81 DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQ----------DSVM  150 (277)
Q Consensus        81 d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~----------~~~~  150 (277)
                      |+.+.-||+++|+..+++++|++.|.++.--.....+++|+.||++++||+++...  +..+....          .-+.
T Consensus       135 D~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~--v~~ie~yk~~~~lRp~~g~wig  212 (325)
T KOG0649|consen  135 DGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKH--VSMIEPYKNPNLLRPDWGKWIG  212 (325)
T ss_pred             CeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccce--eEEeccccChhhcCcccCceeE
Confidence            99999999999999999999999999998866677899999999999999987643  33332211          1234


Q ss_pred             EEEecCCeEEEeecCCcEEEEEccCCccccc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccce
Q 023772          151 SVCLTKTEIIGGSVDGTVRTFDIRVGRELSD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKS  229 (277)
Q Consensus       151 ~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~  229 (277)
                      +++.+.+-+++| ....+.+|+++..+.... ....++..+.|..+  .++++++.+.+.-|.+. |.+-..........
T Consensus       213 ala~~edWlvCG-gGp~lslwhLrsse~t~vfpipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c  288 (325)
T KOG0649|consen  213 ALAVNEDWLVCG-GGPKLSLWHLRSSESTCVFPIPARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIPVESTAC  288 (325)
T ss_pred             EEeccCceEEec-CCCceeEEeccCCCceEEEecccceeEeeeecc--eEEEeccccceeeeeec-cEEEEeccCCccce
Confidence            444444445554 456799999998765433 34567888888644  67888888889888885 33322222221122


Q ss_pred             eeeeeEecCCCceEEeecCCCeEEEE
Q 023772          230 FKTDCCLTNSDAHVTGGSEDGYIYFW  255 (277)
Q Consensus       230 ~~~~~~~~~~~~~l~sgs~d~~i~iw  255 (277)
                      +......+| -+++..++..+.+.+.
T Consensus       289 ~s~s~~~~p-~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  289 YSASWQTSP-IKFISIAGFSNKLHIL  313 (325)
T ss_pred             eeecccCCc-eEEEEecccceeeeee
Confidence            333333334 2344444444455443

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.81  E-value=1.7e-18  Score=137.10  Aligned_cols=121  Identities=25%  Similarity=0.410  Sum_probs=108.5

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCC--------C--------CeeEEEEeccCccEEEEEEcCCCCE
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPH--------R--------GIHIKTYKSHGREVRDVHVTADNSK   74 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~--------~--------~~~~~~~~~h~~~v~~~~~~~~~~~   74 (277)
                      ...|.+|..+|++++|+|+|++|+||+.+|.+-+|-..        +        -...+.+.+|...|..++|+|++.+
T Consensus        58 ~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~  137 (434)
T KOG1009|consen   58 LSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNF  137 (434)
T ss_pred             eecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCce
Confidence            45688999999999999999999999999999999654        2        1234667889999999999999999


Q ss_pred             EEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeC
Q 023772           75 LISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDC  131 (277)
Q Consensus        75 l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~  131 (277)
                      +++++.|.++++||+..|++...+..|...|..++|.|-.+++++-+.|...+.+.+
T Consensus       138 l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~  194 (434)
T KOG1009|consen  138 LVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSA  194 (434)
T ss_pred             eeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeee
Confidence            999999999999999999999999999999999999999999999888887666654

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.80  E-value=5.8e-18  Score=134.16  Aligned_cols=137  Identities=26%  Similarity=0.469  Sum_probs=110.7

Q ss_pred             CCcEEEEEEeCCCC-EEEEEeCCCcEEEEcCCCC---------eeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 023772           18 EGAVLAARFNGDGN-YCLSCGKDRTIRLWNPHRG---------IHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYW   87 (277)
Q Consensus        18 ~~~V~~~~~~~~~~-~l~s~s~d~~v~iwd~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~w   87 (277)
                      ..+|..+.|.++.. .++||+.|..||||-++.+         +....+..|...|+.+.|+|+++.+++|+.+|.+.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            46899999998776 9999999999999975432         2345677899999999999999999999999999999


Q ss_pred             ECC--------C--------CceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEE
Q 023772           88 DVS--------T--------GRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMS  151 (277)
Q Consensus        88 d~~--------~--------~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  151 (277)
                      -..        +        ..+.+.+.+|...|..++|.+++..+++++.|..+++||+..+..  ..+...|...+..
T Consensus        93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l--~~~~~dh~~yvqg  170 (434)
T KOG1009|consen   93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL--LAILDDHEHYVQG  170 (434)
T ss_pred             EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecccee--Eeeccccccccce
Confidence            765        2        234566788999999999999999999999999999999986543  3334445555555


Q ss_pred             EEecC
Q 023772          152 VCLTK  156 (277)
Q Consensus       152 ~~~~~  156 (277)
                      +++++
T Consensus       171 vawDp  175 (434)
T KOG1009|consen  171 VAWDP  175 (434)
T ss_pred             eecch
Confidence            55543

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.80  E-value=4.1e-18  Score=134.63  Aligned_cols=201  Identities=19%  Similarity=0.284  Sum_probs=150.5

Q ss_pred             EEeccCccEEEEEEcCC-CCEEEEEeCCCcEEEEECCCC-------ceeEEeecccCceeEEEEecC-CCEEEEEeCCCc
Q 023772           55 TYKSHGREVRDVHVTAD-NSKLISCGGDRQIFYWDVSTG-------RVIRKFRGHESEVNAVKFNEY-SSVVVSAGYDQS  125 (277)
Q Consensus        55 ~~~~h~~~v~~~~~~~~-~~~l~t~s~d~~v~~wd~~~~-------~~~~~~~~h~~~v~~i~~~~~-~~~l~s~~~d~~  125 (277)
                      .+.+|.++|..++|.|- ...|++||.|.+|++|++..+       +++..+.+|...|.-+.|+|. .+.|++++.|.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            56789999999999994 567899999999999998643       456778899999999999997 568999999999


Q ss_pred             EEEEeCccCCCcceEeeccccCcEEEEEec--CCeEEEeecCCcEEEEEccCCcccccC---CCCCeeEEEEeCCCCEEE
Q 023772          126 LRAWDCRSHSTEPIQIIDSFQDSVMSVCLT--KTEIIGGSVDGTVRTFDIRVGRELSDD---LGQPVNCISMSNDGNCIL  200 (277)
Q Consensus       126 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~d~~i~i~d~~~~~~~~~~---~~~~v~~~~~s~~~~~l~  200 (277)
                      |.+||+.++.  ....+. |++.+++++++  +..+++...|+.||+||.++++.+...   .+.....+.|-.+|..+.
T Consensus       156 v~iWnv~tge--ali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~t  232 (472)
T KOG0303|consen  156 VSIWNVGTGE--ALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFT  232 (472)
T ss_pred             EEEEeccCCc--eeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceee
Confidence            9999997653  333344 89999998886  456999999999999999999876553   234455566777888544


Q ss_pred             EEe---cCCeEEEEECCCCc-e--EEEEeccccceeeeeeEecCCCceEE-eecCCCeEEEEECcCcc
Q 023772          201 ASC---LDSTLRLLDRSTGE-L--LQEYKGHICKSFKTDCCLTNSDAHVT-GGSEDGYIYFWDLVDAS  261 (277)
Q Consensus       201 ~~~---~d~~i~~wd~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~l~-sgs~d~~i~iwd~~~~~  261 (277)
                      +|.   .++.+-|||...-+ .  .+++....   -.+-..+.+|..++. .|--|+.||.|.+.+..
T Consensus       233 TGfsr~seRq~aLwdp~nl~eP~~~~elDtSn---Gvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  233 TGFSRMSERQIALWDPNNLEEPIALQELDTSN---GVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             eccccccccceeccCcccccCcceeEEeccCC---ceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            442   57789999975432 2  23333322   123334456666665 46679999999998765

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=1.2e-18  Score=143.16  Aligned_cols=210  Identities=20%  Similarity=0.308  Sum_probs=146.6

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCC----------CeeEEEEeccCccEEEEEEcCCCCEEEEEeC
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHR----------GIHIKTYKSHGREVRDVHVTADNSKLISCGG   80 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~----------~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~   80 (277)
                      .-.+++|++||.|+++..++..++|||-||+||.|++..          ......+.+|...|+.+++++...+|++++.
T Consensus       337 i~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~  416 (577)
T KOG0642|consen  337 ILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSS  416 (577)
T ss_pred             eEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecC
Confidence            456899999999999999999999999999999995431          1235678899999999999999999999999


Q ss_pred             CCcEEEEECCCCceeEEeec---ccCceeEEEEecCC-CEEEEEeCCCcEEEEeCccCCCc-ceEeecccc-------Cc
Q 023772           81 DRQIFYWDVSTGRVIRKFRG---HESEVNAVKFNEYS-SVVVSAGYDQSLRAWDCRSHSTE-PIQIIDSFQ-------DS  148 (277)
Q Consensus        81 d~~v~~wd~~~~~~~~~~~~---h~~~v~~i~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~-------~~  148 (277)
                      ||+++.|+.....+ .+|..   |.-+ .++++.... ...+   .+.....+++...... ...++....       ..
T Consensus       417 DgTvr~w~~~~~~~-~~f~~~~e~g~P-lsvd~~ss~~a~~~---~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~  491 (577)
T KOG0642|consen  417 DGTVRLWEPTEESP-CTFGEPKEHGYP-LSVDRTSSRPAHSL---ASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQ  491 (577)
T ss_pred             CceEEeeccCCcCc-cccCCccccCCc-ceEeeccchhHhhh---hhcccccccchhhhhhhheeeccccCCCcccccCc
Confidence            99999999876655 33332   2222 234443322 1111   2222333332221111 111111110       11


Q ss_pred             EEEEEecC--CeEEEeecCCcEEEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEec
Q 023772          149 VMSVCLTK--TEIIGGSVDGTVRTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKG  224 (277)
Q Consensus       149 ~~~~~~~~--~~~~~g~~d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~  224 (277)
                      +..+...+  ...+++..|+.|+++|..++..+..  .+...++++++.|+|-+|++++.|+.+++|.+....++.....
T Consensus       492 in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~  571 (577)
T KOG0642|consen  492 INKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTA  571 (577)
T ss_pred             cceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccc
Confidence            22233233  3467889999999999998876654  3456799999999999999999999999999988888777665


Q ss_pred             c
Q 023772          225 H  225 (277)
Q Consensus       225 ~  225 (277)
                      |
T Consensus       572 ~  572 (577)
T KOG0642|consen  572 H  572 (577)
T ss_pred             c
Confidence            5

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=2.6e-18  Score=136.75  Aligned_cols=193  Identities=22%  Similarity=0.306  Sum_probs=144.7

Q ss_pred             EEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeec-
Q 023772           22 LAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRG-  100 (277)
Q Consensus        22 ~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~-  100 (277)
                      ..++|+.+|..+++++.||++|||+...-..+.....|.+.|.+++|+|+++.|++.+.| ..+||+++++..+..... 
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            679999999999999999999999976666677778899999999999999999999999 999999999966655442 


Q ss_pred             -ccCceeEEEEecCC-----CEEEEEeCCCcEEEEeCccCCCc---ce-Eeeccc-cCcEEEEEecCCeEEEeecCCcEE
Q 023772          101 -HESEVNAVKFNEYS-----SVVVSAGYDQSLRAWDCRSHSTE---PI-QIIDSF-QDSVMSVCLTKTEIIGGSVDGTVR  169 (277)
Q Consensus       101 -h~~~v~~i~~~~~~-----~~l~s~~~d~~i~iwd~~~~~~~---~~-~~~~~~-~~~~~~~~~~~~~~~~g~~d~~i~  169 (277)
                       .......+.|..++     .+++....-+.|+.|++......   +. +....+ .-...++..+++.++.|+.||.+.
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa  306 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA  306 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence             23345567777665     33444445566777776533221   11 111111 223345555677799999999999


Q ss_pred             EEEccCCccc---ccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCC
Q 023772          170 TFDIRVGREL---SDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRST  215 (277)
Q Consensus       170 i~d~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~  215 (277)
                      +++..+.+.+   +..|...|+.+.|+|+.+++++-+.|..+.+.-+.-
T Consensus       307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            9998766543   345667899999999999999999999988877654

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=2.3e-17  Score=128.24  Aligned_cols=195  Identities=19%  Similarity=0.294  Sum_probs=143.3

Q ss_pred             CEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEec--CCCEEEEEeCCCcEEEEeCccCCCcceEeecccc-CcE
Q 023772           73 SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNE--YSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQ-DSV  149 (277)
Q Consensus        73 ~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~  149 (277)
                      ..++++-..|.|++||..+++.+..|++++..++.+.|..  ....+.+|+.||+|++||+|............++ .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            5677888899999999999999999999999999999987  5678999999999999999987665555554444 233


Q ss_pred             EEEEec--CCeEEEee----cCCcEEEEEccCCcc-c---ccCCCCCeeEEEEeCCC-CEEEEEecCCeEEEEECCCCce
Q 023772          150 MSVCLT--KTEIIGGS----VDGTVRTFDIRVGRE-L---SDDLGQPVNCISMSNDG-NCILASCLDSTLRLLDRSTGEL  218 (277)
Q Consensus       150 ~~~~~~--~~~~~~g~----~d~~i~i~d~~~~~~-~---~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~wd~~~~~~  218 (277)
                      .++..+  .+.+++|+    .+-.+.+||.|..++ +   ...+...|+++.|+|.. +.|++||.||.+.+||......
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E  200 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE  200 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence            444443  23344443    245688999998766 2   34567789999999964 7899999999999999975432


Q ss_pred             ----EEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccC
Q 023772          219 ----LQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAH  269 (277)
Q Consensus       219 ----~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h  269 (277)
                          +.++. +. ......-..++..+.+.+-+.....++|+++++..+..+...
T Consensus       201 eDaL~~viN-~~-sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~  253 (376)
T KOG1188|consen  201 EDALLHVIN-HG-SSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENP  253 (376)
T ss_pred             hhhHHHhhc-cc-ceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCc
Confidence                22222 11 111122223455567888889999999999999877766644

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.78  E-value=1.7e-17  Score=126.51  Aligned_cols=196  Identities=22%  Similarity=0.235  Sum_probs=146.5

Q ss_pred             ccCCcEEEEEEeCCC-----CEEEEEeCCCcEEEEcCCCCeeEE---------EEeccCccEEEEEEcC-CCCEEEEEeC
Q 023772           16 GHEGAVLAARFNGDG-----NYCLSCGKDRTIRLWNPHRGIHIK---------TYKSHGREVRDVHVTA-DNSKLISCGG   80 (277)
Q Consensus        16 ~H~~~V~~~~~~~~~-----~~l~s~s~d~~v~iwd~~~~~~~~---------~~~~h~~~v~~~~~~~-~~~~l~t~s~   80 (277)
                      -|.-|++.+.|.|+.     ++|||+|  ..+|+|.+...+...         .-..+..++++..|.. +-++|.++|-
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi  171 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI  171 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence            688999999999975     3666655  489999876421111         1134667899999986 5578899999


Q ss_pred             CCcEEEEECCCCc---eeEEeecccCceeEEEEecCC-CEEEEEeCCCcEEEEeCccCCCcceEeeccc---cCcEEEEE
Q 023772           81 DRQIFYWDVSTGR---VIRKFRGHESEVNAVKFNEYS-SVVVSAGYDQSLRAWDCRSHSTEPIQIIDSF---QDSVMSVC  153 (277)
Q Consensus        81 d~~v~~wd~~~~~---~~~~~~~h~~~v~~i~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~  153 (277)
                      |.++.+||++++.   +..++-+|..+|..++|...+ .+|+++|.||.+++||+|..  +...++...   ..+...++
T Consensus       172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~l--eHSTIIYE~p~~~~pLlRLs  249 (364)
T KOG0290|consen  172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSL--EHSTIIYEDPSPSTPLLRLS  249 (364)
T ss_pred             cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccc--ccceEEecCCCCCCcceeec
Confidence            9999999999873   356788999999999999854 57999999999999999864  333333322   23455666


Q ss_pred             ecC---CeEEEeecC-CcEEEEEccCCccc---ccCCCCCeeEEEEeCCC-CEEEEEecCCeEEEEECCC
Q 023772          154 LTK---TEIIGGSVD-GTVRTFDIRVGREL---SDDLGQPVNCISMSNDG-NCILASCLDSTLRLLDRST  215 (277)
Q Consensus       154 ~~~---~~~~~g~~d-~~i~i~d~~~~~~~---~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~wd~~~  215 (277)
                      +++   +.+++-..| ..|.+.|+|.....   ...+...|+.++|.|.. ..|.+++.|...-+||+.+
T Consensus       250 wnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q  319 (364)
T KOG0290|consen  250 WNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ  319 (364)
T ss_pred             cCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence            653   446655444 57999999875432   23567899999999964 6788999999999999864

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.77  E-value=1.6e-16  Score=135.95  Aligned_cols=240  Identities=15%  Similarity=0.143  Sum_probs=165.7

Q ss_pred             cCCcEEEEEEeC-CCCEEEEEeCCCcEEEEcCCCCee--EE----EEeccCccEEEEEEcCCC--CEEEEEeCCCcEEEE
Q 023772           17 HEGAVLAARFNG-DGNYCLSCGKDRTIRLWNPHRGIH--IK----TYKSHGREVRDVHVTADN--SKLISCGGDRQIFYW   87 (277)
Q Consensus        17 H~~~V~~~~~~~-~~~~l~s~s~d~~v~iwd~~~~~~--~~----~~~~h~~~v~~~~~~~~~--~~l~t~s~d~~v~~w   87 (277)
                      -..+|.++.|+| +..+|+.|..+|.|-+||+..+..  ..    ....|..+|+.+.|..+-  ..|+++|.||+|..|
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W  320 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW  320 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence            456799999999 567888999999999999877644  11    234588899999997643  459999999999999


Q ss_pred             ECCCCce------eEEee------cccCceeEEEEecC-CCEEEEEeCCCcEEEEeCccCC--C----cceEeeccccCc
Q 023772           88 DVSTGRV------IRKFR------GHESEVNAVKFNEY-SSVVVSAGYDQSLRAWDCRSHS--T----EPIQIIDSFQDS  148 (277)
Q Consensus        88 d~~~~~~------~~~~~------~h~~~v~~i~~~~~-~~~l~s~~~d~~i~iwd~~~~~--~----~~~~~~~~~~~~  148 (277)
                      +++.-..      .....      .-...+++++|.+. ...++.|+.+|.|..=.-....  .    +....+..|.++
T Consensus       321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~  400 (555)
T KOG1587|consen  321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP  400 (555)
T ss_pred             eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence            8753211      11111      12346788888764 4678899999998773322211  1    123344556778


Q ss_pred             EEEEEecCC---eEEEeecCCcEEEEEcc-CCccccc--CCCCCeeEEEEeCCCC-EEEEEecCCeEEEEECCCCc--eE
Q 023772          149 VMSVCLTKT---EIIGGSVDGTVRTFDIR-VGRELSD--DLGQPVNCISMSNDGN-CILASCLDSTLRLLDRSTGE--LL  219 (277)
Q Consensus       149 ~~~~~~~~~---~~~~g~~d~~i~i~d~~-~~~~~~~--~~~~~v~~~~~s~~~~-~l~~~~~d~~i~~wd~~~~~--~~  219 (277)
                      +.++..+|-   .+++++ |-++++|... ....+..  .....+.+++|||... .++++..||.|.+||+....  ++
T Consensus       401 v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv  479 (555)
T KOG1587|consen  401 VYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPV  479 (555)
T ss_pred             eEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCc
Confidence            888887753   355555 9999999976 3332222  2334599999999764 56777789999999996543  33


Q ss_pred             EEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcC
Q 023772          220 QEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVD  259 (277)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~  259 (277)
                      ....-+  ........+++.++.++.|...|.+.+|++.+
T Consensus       480 ~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  480 LSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             cccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            332222  22333344567799999999999999999965

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.77  E-value=7e-19  Score=150.58  Aligned_cols=214  Identities=19%  Similarity=0.363  Sum_probs=163.9

Q ss_pred             EEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCcc
Q 023772           54 KTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRS  133 (277)
Q Consensus        54 ~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~  133 (277)
                      +.+.+|..+|.|+.|...+.+|+||+.|..+|||.++++.+..++++|...++.++.+....+++++|.|..|++|-+..
T Consensus       184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~  263 (1113)
T KOG0644|consen  184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD  263 (1113)
T ss_pred             HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC
Confidence            34568999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             CCCcceEeeccccCcEEEEEecCCeEEEeecCCcEEEEEccCCccccc------CC------------------------
Q 023772          134 HSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSD------DL------------------------  183 (277)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~------~~------------------------  183 (277)
                      .  .++..+.+|.+.|+++.++|..  +.+.||++++||.+-...+..      ..                        
T Consensus       264 ~--~pvsvLrghtgavtaiafsP~~--sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~e  339 (1113)
T KOG0644|consen  264 G--APVSVLRGHTGAVTAIAFSPRA--SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGE  339 (1113)
T ss_pred             C--chHHHHhccccceeeeccCccc--cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcc
Confidence            4  5666778899999999998855  778899999999872111000      00                        


Q ss_pred             --CCCeeEEEEeCCC-----------CEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCC-ceEEeecCC
Q 023772          184 --GQPVNCISMSNDG-----------NCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSD-AHVTGGSED  249 (277)
Q Consensus       184 --~~~v~~~~~s~~~-----------~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~sgs~d  249 (277)
                        .+...++++...+           .+.+++-.+-.+++|++.+|.+.....+|....+.++  +.|-+ +..++++.|
T Consensus       340 a~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd--~Hpfn~ri~msag~d  417 (1113)
T KOG0644|consen  340 ARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLD--VHPFNPRIAMSAGYD  417 (1113)
T ss_pred             cccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeee--ecCCCcHhhhhccCC
Confidence              0111122222222           2333444555678899999988888888876666655  45544 445689999


Q ss_pred             CeEEEEECcCccceeeec-cCccee
Q 023772          250 GYIYFWDLVDASVVAKFK-AHSLVV  273 (277)
Q Consensus       250 ~~i~iwd~~~~~~~~~~~-~h~~~v  273 (277)
                      |..-|||+-.|..++.+. +|.+.+
T Consensus       418 gst~iwdi~eg~pik~y~~gh~kl~  442 (1113)
T KOG0644|consen  418 GSTIIWDIWEGIPIKHYFIGHGKLV  442 (1113)
T ss_pred             CceEeeecccCCcceeeecccceee
Confidence            999999999998886554 665543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.76  E-value=7.8e-17  Score=141.38  Aligned_cols=240  Identities=17%  Similarity=0.289  Sum_probs=168.7

Q ss_pred             CcEEEEEEeC--CCCEEEEEeCCCcEEEEcCCC-----CeeEEEEe-------ccCccEEEEEEcCCCCEEEEEeCCCcE
Q 023772           19 GAVLAARFNG--DGNYCLSCGKDRTIRLWNPHR-----GIHIKTYK-------SHGREVRDVHVTADNSKLISCGGDRQI   84 (277)
Q Consensus        19 ~~V~~~~~~~--~~~~l~s~s~d~~v~iwd~~~-----~~~~~~~~-------~h~~~v~~~~~~~~~~~l~t~s~d~~v   84 (277)
                      ..|..+.+-.  |..++++|+.||.||||+-..     .+.+..+.       +..+.-.-++|..+..+|+++|.-..|
T Consensus      1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~I 1189 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSI 1189 (1387)
T ss_pred             CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEE
Confidence            3477777754  557899999999999997322     22332221       111222446788888899988889999


Q ss_pred             EEEECCCCceeEEeec-ccCceeEEEEec-CCCEEEEEeCCCcEEEEeCccCCCc-ceEeeccccCc--EEEEEecCC--
Q 023772           85 FYWDVSTGRVIRKFRG-HESEVNAVKFNE-YSSVVVSAGYDQSLRAWDCRSHSTE-PIQIIDSFQDS--VMSVCLTKT--  157 (277)
Q Consensus        85 ~~wd~~~~~~~~~~~~-h~~~v~~i~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~--~~~~~~~~~--  157 (277)
                      ++||++...+...+.. ...-|+++.-+. .+++++.|-.||.+++||.+..... .+.....|.+.  |..+.+.+.  
T Consensus      1190 RIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~ 1269 (1387)
T KOG1517|consen 1190 RIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGL 1269 (1387)
T ss_pred             EEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCC
Confidence            9999998887776653 344566666543 3689999999999999998865432 34444555555  666666542  


Q ss_pred             -eEEEeecCCcEEEEEccCCcc--ccc-----CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEe------
Q 023772          158 -EIIGGSVDGTVRTFDIRVGRE--LSD-----DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYK------  223 (277)
Q Consensus       158 -~~~~g~~d~~i~i~d~~~~~~--~~~-----~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~------  223 (277)
                       ++++|+.||.|++||+|....  +..     ..+...+++..+++...+++|+. +.|+||++.. +.+..+.      
T Consensus      1270 ~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~ 1347 (1387)
T KOG1517|consen 1270 GELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFM 1347 (1387)
T ss_pred             cceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccc
Confidence             499999999999999998421  111     12446899999999999999988 9999999963 3333222      


Q ss_pred             ccccceeeeeeEecCCCceEEeecCCCeEEEEECcCcc
Q 023772          224 GHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDAS  261 (277)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~  261 (277)
                      +.... ......|+|---++|.|+.|..|.||.....+
T Consensus      1348 ~q~~g-s~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1348 GQRIG-SVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             cCcCC-CcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence            22111 12345678877789999999999999987654

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.76  E-value=1.6e-16  Score=135.66  Aligned_cols=220  Identities=10%  Similarity=0.117  Sum_probs=147.2

Q ss_pred             ccceeeccCCcEEEEEEeCCCCEEEEEeCC---CcEEEEcCCCCee--EEEEeccCccEEEEEEcCCCCEEEEEe-CCCc
Q 023772           10 EANVLKGHEGAVLAARFNGDGNYCLSCGKD---RTIRLWNPHRGIH--IKTYKSHGREVRDVHVTADNSKLISCG-GDRQ   83 (277)
Q Consensus        10 ~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d---~~v~iwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~t~s-~d~~   83 (277)
                      ....+..|...+....|+|||+.|+.++.+   ..|++||+.+++.  +..+.+|   ....+|+|++++|+.++ .++.
T Consensus       195 ~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~  271 (429)
T PRK01742        195 NQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGV  271 (429)
T ss_pred             CceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCc
Confidence            345567888899999999999999987654   4699999988754  3333333   44689999999888764 6776


Q ss_pred             EEEE--ECCCCceeEEeecccCceeEEEEecCCCEEEEEe-CCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEE
Q 023772           84 IFYW--DVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAG-YDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEII  160 (277)
Q Consensus        84 v~~w--d~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (277)
                      ..+|  |+.+++. ..+..+...+....|+|+++.++.++ .++...+|++....... .... +......+.+++..++
T Consensus       272 ~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~-~~l~-~~~~~~~~SpDG~~ia  348 (429)
T PRK01742        272 LNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA-SLVG-GRGYSAQISADGKTLV  348 (429)
T ss_pred             EEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEec-CCCCCccCCCCCCEEE
Confidence            6555  6666554 45566777788899999999766554 57888999875432222 2221 1112223444556677


Q ss_pred             EeecCCcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEEC--CCCceEEEEeccccceeeeeeEecC
Q 023772          161 GGSVDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDR--STGELLQEYKGHICKSFKTDCCLTN  238 (277)
Q Consensus       161 ~g~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~--~~~~~~~~~~~~~~~~~~~~~~~~~  238 (277)
                      ..+.++ +..||+.+++..............|+|+|++|+.++.++..++|++  .+++.++.+.+|...  ....+++|
T Consensus       349 ~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~--~~~p~wsp  425 (429)
T PRK01742        349 MINGDN-VVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQ--VKFPAWSP  425 (429)
T ss_pred             EEcCCC-EEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCC--CCCcccCC
Confidence            666655 5559998765322111123356789999999999999998888875  357777777766432  23344555

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.76  E-value=2.2e-15  Score=118.42  Aligned_cols=237  Identities=14%  Similarity=0.160  Sum_probs=168.9

Q ss_pred             CCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCC--CcEEEEECCCCcee
Q 023772           18 EGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGD--RQIFYWDVSTGRVI   95 (277)
Q Consensus        18 ~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d--~~v~~wd~~~~~~~   95 (277)
                      ...+....|+.+...|..|+.||. ++|+................|-.+-|+.  .+++-.+.+  +.+++.+.+.+..+
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~I   81 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTI   81 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceE
Confidence            345677779999988888888876 8888665332212222233455555654  355544443  46999999888877


Q ss_pred             EEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCc-ceEeeccccCcEEEEEecCC--eEEE--eecCCcEEE
Q 023772           96 RKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTE-PIQIIDSFQDSVMSVCLTKT--EIIG--GSVDGTVRT  170 (277)
Q Consensus        96 ~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~--g~~d~~i~i  170 (277)
                      ..+. -..+|.++.++.+  +++.+-.+ .|.|||++....- .+......+..+.++.++..  +++-  ....|.|.+
T Consensus        82 Ce~~-fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l  157 (391)
T KOG2110|consen   82 CEIF-FPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL  157 (391)
T ss_pred             EEEe-cCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEE
Confidence            7665 4678888888864  55555554 4999999864321 11122223444555555543  3442  234689999


Q ss_pred             EEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCe-EEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeec
Q 023772          171 FDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDST-LRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGS  247 (277)
Q Consensus       171 ~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs  247 (277)
                      ||..+-+....  .|..++.+++|+++|.+||++|+.|+ ||+|...+|+.+++|+-......+.+.+|++++.+|++.|
T Consensus       158 ~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS  237 (391)
T KOG2110|consen  158 FDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASS  237 (391)
T ss_pred             EEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEec
Confidence            99887665433  57789999999999999999999997 6899999999999998655566677789999999999999


Q ss_pred             CCCeEEEEECcCcc
Q 023772          248 EDGYIYFWDLVDAS  261 (277)
Q Consensus       248 ~d~~i~iwd~~~~~  261 (277)
                      ..++|.++.++...
T Consensus       238 ~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  238 NTETVHIFKLEKVS  251 (391)
T ss_pred             CCCeEEEEEecccc
Confidence            99999999988754

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.76  E-value=6.3e-16  Score=137.55  Aligned_cols=252  Identities=15%  Similarity=0.206  Sum_probs=172.9

Q ss_pred             ceeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEcCCC-------CeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCc
Q 023772           12 NVLKGHEGAVLAARFNGDG-NYCLSCGKDRTIRLWNPHR-------GIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQ   83 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~~~-~~l~s~s~d~~v~iwd~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~   83 (277)
                      ..|..|+..|..++.+++. .+++|||.||+||+||...       .+...++......+..+...+.++.++.++.||.
T Consensus      1042 AhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1042 AHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGS 1121 (1431)
T ss_pred             ehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCe
Confidence            4467789999999888755 9999999999999999653       2334455555678999999999999999999999


Q ss_pred             EEEEECCCCc-------eeEEeeccc-CceeEE-EEec-CC-CEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEE
Q 023772           84 IFYWDVSTGR-------VIRKFRGHE-SEVNAV-KFNE-YS-SVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSV  152 (277)
Q Consensus        84 v~~wd~~~~~-------~~~~~~~h~-~~v~~i-~~~~-~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  152 (277)
                      |.+.+++..+       ..+....+. +.+.+| ++.. .+ ..++.+...+.|..||++..............+.+.++
T Consensus      1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred             EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence            9999987521       122222222 223222 2222 23 37888888999999999865433222233344567777


Q ss_pred             EecCCe--EEEeecCCcEEEEEccCCccccc---CCCCCeeEEEEeCC---CCEEEEEe--cCCeEEEEECCCCceEEEE
Q 023772          153 CLTKTE--IIGGSVDGTVRTFDIRVGRELSD---DLGQPVNCISMSND---GNCILASC--LDSTLRLLDRSTGELLQEY  222 (277)
Q Consensus       153 ~~~~~~--~~~g~~d~~i~i~d~~~~~~~~~---~~~~~v~~~~~s~~---~~~l~~~~--~d~~i~~wd~~~~~~~~~~  222 (277)
                      +.++..  ++.|+..|.+.+||+|-+..+..   ....+++.+..+|.   ....++++  ..+.+-+|++.+|.+.+.+
T Consensus      1202 ~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl 1281 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVL 1281 (1431)
T ss_pred             EecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEE
Confidence            777654  88999999999999987655432   22356777776663   34555544  5778999999998766655


Q ss_pred             ecc-----------------ccceeeeeeEecCCCceEEeecCCCeEEEEECcCccce
Q 023772          223 KGH-----------------ICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVV  263 (277)
Q Consensus       223 ~~~-----------------~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~  263 (277)
                      -..                 ........+++...+.++.+|+.|..||.||....+..
T Consensus      1282 ~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1282 WASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred             EcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence            432                 01111233444455678899999999999998876544

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.75  E-value=2.7e-17  Score=134.81  Aligned_cols=185  Identities=19%  Similarity=0.307  Sum_probs=144.1

Q ss_pred             ceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 023772           12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVST   91 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~   91 (277)
                      ....+|.++|.+-+|+|||.-|+|+|+||.|++|. ++|....++.....+|.|++|.|+.+.++-+.. +.+.+=.+..
T Consensus        98 ~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~  175 (737)
T KOG1524|consen   98 RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHISIKPLAA  175 (737)
T ss_pred             hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecC-CeEEEeeccc
Confidence            34568999999999999999999999999999997 667766666666789999999998876654432 3455555555


Q ss_pred             CceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCCcEEEE
Q 023772           92 GRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTF  171 (277)
Q Consensus        92 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~  171 (277)
                      ...+-.++.|.+-|.+++|++..+++++|+.|-..++||-...   +......+.-++++++++++.+..-+.-.++|+ 
T Consensus       176 n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~---~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R~-  251 (737)
T KOG1524|consen  176 NSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA---NLFTSAAEEYAITSVAFNPEKDYLLWSYNTARF-  251 (737)
T ss_pred             ccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCc---ccccCChhccceeeeeeccccceeeeeeeeeee-
Confidence            5556679999999999999999999999999999999996532   344445567788999998876433333345552 


Q ss_pred             EccCCcccccCCCCCeeEEEEeCCCCEEEEEecCCeEEE
Q 023772          172 DIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRL  210 (277)
Q Consensus       172 d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~  210 (277)
                              ....-..|..++||+||..++.|...|.+.+
T Consensus       252 --------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  252 --------SSPRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             --------cCCCccceEEEEEcCCCceeeccccCceEEE
Confidence                    2223457899999999999999998887643

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.75  E-value=4.1e-16  Score=133.12  Aligned_cols=222  Identities=16%  Similarity=0.125  Sum_probs=149.5

Q ss_pred             CCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCce--eEEeecccCceeEEEEecC
Q 023772           39 DRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGD---RQIFYWDVSTGRV--IRKFRGHESEVNAVKFNEY  113 (277)
Q Consensus        39 d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d---~~v~~wd~~~~~~--~~~~~~h~~~v~~i~~~~~  113 (277)
                      +..|.+||..... .+.+..|...+.+..|+|++++|+.++.+   ..|++||+.+++.  +..+.+|   .....|+|+
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD  258 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD  258 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence            5789999975443 55666778889999999999999887754   3699999988753  3334443   346899999


Q ss_pred             CCEEEEEe-CCCcEEEE--eCccCCCcceEeeccccCcEEEEEec--CCeEEEe-ecCCcEEEEEccCCc--ccccCCCC
Q 023772          114 SSVVVSAG-YDQSLRAW--DCRSHSTEPIQIIDSFQDSVMSVCLT--KTEIIGG-SVDGTVRTFDIRVGR--ELSDDLGQ  185 (277)
Q Consensus       114 ~~~l~s~~-~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g-~~d~~i~i~d~~~~~--~~~~~~~~  185 (277)
                      ++.|+.++ .+|.+.+|  |+....   ...+..+........++  +..++.. ..++...+|++....  ........
T Consensus       259 G~~La~~~~~~g~~~Iy~~d~~~~~---~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~  335 (429)
T PRK01742        259 GSRLAFASSKDGVLNIYVMGANGGT---PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG  335 (429)
T ss_pred             CCEEEEEEecCCcEEEEEEECCCCC---eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC
Confidence            99887764 68877766  443322   22222233333344444  4455544 457888888875321  11111111


Q ss_pred             CeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECc--Cccce
Q 023772          186 PVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLV--DASVV  263 (277)
Q Consensus       186 ~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~--~~~~~  263 (277)
                        ....|+|+|++|+..+.++ +.+||+.+++.........    .....++|++++++.++.++.+++|++.  +|+.+
T Consensus       336 --~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~----~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~  408 (429)
T PRK01742        336 --YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFL----DESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFK  408 (429)
T ss_pred             --CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCC----CCCceECCCCCEEEEEEcCCCceEEEEEECCCCce
Confidence              4578999999998887765 5669998887543222221    1335689999999999999999988863  68889


Q ss_pred             eeeccCcceeE
Q 023772          264 AKFKAHSLVVK  274 (277)
Q Consensus       264 ~~~~~h~~~v~  274 (277)
                      .++.+|.+.+.
T Consensus       409 ~~l~~~~g~~~  419 (429)
T PRK01742        409 ARLPGSDGQVK  419 (429)
T ss_pred             EEccCCCCCCC
Confidence            99988876543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.74  E-value=7.9e-15  Score=121.34  Aligned_cols=239  Identities=8%  Similarity=0.050  Sum_probs=150.8

Q ss_pred             cCCcEEEEEEeCCCCEEEEE-eCCCcEEEEcCC-CCee--EEEEeccCccEEEEEEcCCCCEEEEEeC-CCcEEEEECCC
Q 023772           17 HEGAVLAARFNGDGNYCLSC-GKDRTIRLWNPH-RGIH--IKTYKSHGREVRDVHVTADNSKLISCGG-DRQIFYWDVST   91 (277)
Q Consensus        17 H~~~V~~~~~~~~~~~l~s~-s~d~~v~iwd~~-~~~~--~~~~~~h~~~v~~~~~~~~~~~l~t~s~-d~~v~~wd~~~   91 (277)
                      +.+....+.++|++++|+.+ ..++.|.+|+.. ++..  ..... ..+....+.++|+++++++++. ++.|.+|++++
T Consensus        33 ~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~  111 (330)
T PRK11028         33 VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDK  111 (330)
T ss_pred             cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECC
Confidence            34567789999999988765 468999999886 3332  22222 2345678999999999888764 88999999974


Q ss_pred             -Cc---eeEEeecccCceeEEEEecCCCEEEE-EeCCCcEEEEeCccCC-Ccc----eEeeccccCcEEEEEec--CCeE
Q 023772           92 -GR---VIRKFRGHESEVNAVKFNEYSSVVVS-AGYDQSLRAWDCRSHS-TEP----IQIIDSFQDSVMSVCLT--KTEI  159 (277)
Q Consensus        92 -~~---~~~~~~~h~~~v~~i~~~~~~~~l~s-~~~d~~i~iwd~~~~~-~~~----~~~~~~~~~~~~~~~~~--~~~~  159 (277)
                       +.   .+..+. +......+.++|++++++. ...++.|.+||+.... ...    ...... ......+.++  +..+
T Consensus       112 ~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~l  189 (330)
T PRK11028        112 DGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYA  189 (330)
T ss_pred             CCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEE
Confidence             32   233232 2334567889999988754 4567999999987521 110    001111 1122334444  4566


Q ss_pred             EEeec-CCcEEEEEccCC--c--cccc--CC----C--CCeeEEEEeCCCCEEEEEe-cCCeEEEEECCCCceEEEEecc
Q 023772          160 IGGSV-DGTVRTFDIRVG--R--ELSD--DL----G--QPVNCISMSNDGNCILASC-LDSTLRLLDRSTGELLQEYKGH  225 (277)
Q Consensus       160 ~~g~~-d~~i~i~d~~~~--~--~~~~--~~----~--~~v~~~~~s~~~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~~  225 (277)
                      ++... +++|.+||+...  +  .+..  ..    .  .....+.|+|++++++++. .++.|.+|++........+.++
T Consensus       190 yv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~  269 (330)
T PRK11028        190 YCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGH  269 (330)
T ss_pred             EEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEE
Confidence            66554 899999999732  1  1110  00    1  1223588999999988875 4789999998543221122222


Q ss_pred             cc-ceeeeeeEecCCCceEEeec-CCCeEEEEECc
Q 023772          226 IC-KSFKTDCCLTNSDAHVTGGS-EDGYIYFWDLV  258 (277)
Q Consensus       226 ~~-~~~~~~~~~~~~~~~l~sgs-~d~~i~iwd~~  258 (277)
                      .. ........++|+|++|+++. .+++|.+|+++
T Consensus       270 ~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        270 QPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             EeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            10 11233467899999988765 48999999874

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.74  E-value=5.5e-16  Score=118.21  Aligned_cols=243  Identities=17%  Similarity=0.218  Sum_probs=172.2

Q ss_pred             ceeeccCCcEEEEEEeCC-CCEEEEEeCC-------CcEEEEcCCCC---------eeEEEEe-ccCccEEEEEEcCCCC
Q 023772           12 NVLKGHEGAVLAARFNGD-GNYCLSCGKD-------RTIRLWNPHRG---------IHIKTYK-SHGREVRDVHVTADNS   73 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~~-~~~l~s~s~d-------~~v~iwd~~~~---------~~~~~~~-~h~~~v~~~~~~~~~~   73 (277)
                      ..|..|.+.|..++-+|- .+.|+|+-+|       ..+.||.+...         +++..+. .+-+.|.++.|.|++.
T Consensus        57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~  136 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD  136 (370)
T ss_pred             hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence            446678899999999994 4566666443       35689986532         1222333 4557899999999999


Q ss_pred             EEEEEeCCCcEEEEECCCCce-eEEee-----cccCceeEEEEec--CCCEEEEEeCCCcEEEEeCccCCCcceEeeccc
Q 023772           74 KLISCGGDRQIFYWDVSTGRV-IRKFR-----GHESEVNAVKFNE--YSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSF  145 (277)
Q Consensus        74 ~l~t~s~d~~v~~wd~~~~~~-~~~~~-----~h~~~v~~i~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  145 (277)
                      ++++-. |..|.+|+++.+.. +..+.     .|+...++-+|+|  +++.+++ ..|+++..||+|+... ...+-..|
T Consensus       137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~-~~sI~dAH  213 (370)
T KOG1007|consen  137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKK-NNSIEDAH  213 (370)
T ss_pred             eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcEEEEEccchhh-hcchhhhh
Confidence            998775 88999999987654 33222     2455667778887  5777776 4689999999996533 33344556


Q ss_pred             cCcEEEEEecCCe---EEEeecCCcEEEEEccCCccc-cc--CCCCCeeEEEEeCCC-CEEEEEecCCeEEEEECCCC--
Q 023772          146 QDSVMSVCLTKTE---IIGGSVDGTVRTFDIRVGREL-SD--DLGQPVNCISMSNDG-NCILASCLDSTLRLLDRSTG--  216 (277)
Q Consensus       146 ~~~~~~~~~~~~~---~~~g~~d~~i~i~d~~~~~~~-~~--~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~wd~~~~--  216 (277)
                      ...+..+.++|+.   +++++.||.+++||.|..+.. ..  .+.+-|.++.|+|.. +.|++|+.|..+.+|....-  
T Consensus       214 gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSS  293 (370)
T KOG1007|consen  214 GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSS  293 (370)
T ss_pred             cceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccc
Confidence            6678888888764   899999999999999976533 22  345679999999964 56789999999999975321  


Q ss_pred             ---------------------------ceEEEEeccccceeeeeeEecCCCce-EEeecCCCeEEEEECcC
Q 023772          217 ---------------------------ELLQEYKGHICKSFKTDCCLTNSDAH-VTGGSEDGYIYFWDLVD  259 (277)
Q Consensus       217 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~-l~sgs~d~~i~iwd~~~  259 (277)
                                                 .++.+|..|+..++.  +.+++-+.+ +|+=|.||.+-|=.+..
T Consensus       294 E~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~--~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  294 EQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYA--LAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             ccccccccccccCcchhhHHhcccccccccccccccccceEE--EeeccCCCeeEEEeccCceEEeecCCh
Confidence                                       123456667655544  456666666 56678999987766653

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.74  E-value=8.5e-16  Score=135.01  Aligned_cols=252  Identities=17%  Similarity=0.270  Sum_probs=169.6

Q ss_pred             eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccC---ccEEEEEEcC--CCCEEEEEeCCCcEEEEEC
Q 023772           15 KGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG---REVRDVHVTA--DNSKLISCGGDRQIFYWDV   89 (277)
Q Consensus        15 ~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~---~~v~~~~~~~--~~~~l~t~s~d~~v~~wd~   89 (277)
                      .+...+-..+.|+|=...++++...-.|+|||.+.++.+..|..+.   ..|+.+.+..  +..++++|+.||.|++|+-
T Consensus      1061 ~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~ 1140 (1387)
T KOG1517|consen 1061 TGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKD 1140 (1387)
T ss_pred             hcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecc
Confidence            3444566778899988899998888899999999998888776543   4588888864  4468999999999999974


Q ss_pred             C-C----CceeEEeec-------ccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec--
Q 023772           90 S-T----GRVIRKFRG-------HESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT--  155 (277)
Q Consensus        90 ~-~----~~~~~~~~~-------h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--  155 (277)
                      - +    -+++..+.+       ..+.-.-++|......++++|.-..|+|||....... ..+.......++++..+  
T Consensus      1141 y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~-~diP~~s~t~vTaLS~~~~ 1219 (1387)
T KOG1517|consen 1141 YADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVV-ADIPYGSSTLVTALSADLV 1219 (1387)
T ss_pred             cccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeE-eecccCCCccceeeccccc
Confidence            2 2    233433321       1111133567666667777777899999998643221 11112223334444433  


Q ss_pred             -CCeEEEeecCCcEEEEEccCCcc-----cccCCCC--CeeEEEEeCCCC-EEEEEecCCeEEEEECCCCceEEEEeccc
Q 023772          156 -KTEIIGGSVDGTVRTFDIRVGRE-----LSDDLGQ--PVNCISMSNDGN-CILASCLDSTLRLLDRSTGELLQEYKGHI  226 (277)
Q Consensus       156 -~~~~~~g~~d~~i~i~d~~~~~~-----~~~~~~~--~v~~~~~s~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~  226 (277)
                       ++.++.|-.||.+++||.|....     ....+..  +|..+.+.+.|- .|++|+.||.|++||++.......+.-..
T Consensus      1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~ 1299 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA 1299 (1387)
T ss_pred             CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee
Confidence             46689999999999999986532     1223333  488899988764 49999999999999998753322221111


Q ss_pred             cc---eeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccC
Q 023772          227 CK---SFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAH  269 (277)
Q Consensus       227 ~~---~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h  269 (277)
                      ..   ...+....++....+|+|+. +.|+||++. |+.+..++.+
T Consensus      1300 ~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n 1343 (1387)
T KOG1517|consen 1300 HWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYN 1343 (1387)
T ss_pred             ccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccC
Confidence            01   11233455678889999998 999999987 6666666644

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.74  E-value=4.3e-17  Score=136.19  Aligned_cols=199  Identities=16%  Similarity=0.227  Sum_probs=143.2

Q ss_pred             cCCcEEEEEEeC-CCCEEEEEeCCCcEEEEcCCCC-------eeEEEEeccCccEEEEEEcC-CCCEEEEEeCCCcEEEE
Q 023772           17 HEGAVLAARFNG-DGNYCLSCGKDRTIRLWNPHRG-------IHIKTYKSHGREVRDVHVTA-DNSKLISCGGDRQIFYW   87 (277)
Q Consensus        17 H~~~V~~~~~~~-~~~~l~s~s~d~~v~iwd~~~~-------~~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~d~~v~~w   87 (277)
                      ....|+.+.|+| |...|+.++.||.|++|.+..+       ..-..+..|...|.++.|+| -.+.|++++.|.+|++|
T Consensus       626 Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lW  705 (1012)
T KOG1445|consen  626 NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELW  705 (1012)
T ss_pred             cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeee
Confidence            446799999998 7789999999999999987653       34567889999999999998 45678999999999999


Q ss_pred             ECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeecc---ccCcEEEEEecCCeEEEeec
Q 023772           88 DVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDS---FQDSVMSVCLTKTEIIGGSV  164 (277)
Q Consensus        88 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~  164 (277)
                      |+.+++....+.+|++.|.+++|+|+|+.++|.+.||++++|+.++.. .+++.-..   ..+.-..+..++..+++.+.
T Consensus       706 Dl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e-~pv~Eg~gpvgtRgARi~wacdgr~viv~Gf  784 (1012)
T KOG1445|consen  706 DLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE-QPVYEGKGPVGTRGARILWACDGRIVIVVGF  784 (1012)
T ss_pred             ehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC-CccccCCCCccCcceeEEEEecCcEEEEecc
Confidence            999999989999999999999999999999999999999999988643 23322111   11112233446666666665


Q ss_pred             CC----cEEEEEccCCc--ccccC---CCCCeeEEEEeCCCC-EEEEEecCCeEEEEECCCC
Q 023772          165 DG----TVRTFDIRVGR--ELSDD---LGQPVNCISMSNDGN-CILASCLDSTLRLLDRSTG  216 (277)
Q Consensus       165 d~----~i~i~d~~~~~--~~~~~---~~~~v~~~~~s~~~~-~l~~~~~d~~i~~wd~~~~  216 (277)
                      |+    .|.+||-.+-.  .+...   ....+.--.+++|.+ .+++|-.|..|++|.+-..
T Consensus       785 dk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~e  846 (1012)
T KOG1445|consen  785 DKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYE  846 (1012)
T ss_pred             cccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCC
Confidence            54    46667654311  11100   000111112344544 5677888999999997543

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=1.5e-15  Score=130.96  Aligned_cols=117  Identities=15%  Similarity=0.223  Sum_probs=100.7

Q ss_pred             eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCC----CeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772           15 KGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHR----GIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        15 ~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~----~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~   90 (277)
                      ..|.-.+++.+++|+++++++|..||.|.+|.--.    ......+.-|..+|.++.|+++|.+|++||..+.+-+|.++
T Consensus       202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~  281 (792)
T KOG1963|consen  202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE  281 (792)
T ss_pred             hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence            35777799999999999999999999999996321    23356788899999999999999999999999999999999


Q ss_pred             CCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCc
Q 023772           91 TGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR  132 (277)
Q Consensus        91 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~  132 (277)
                      +++ .+-+..-.++|..+.++||+.+.+....|..|.+-...
T Consensus       282 T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~  322 (792)
T KOG1963|consen  282 TGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKAS  322 (792)
T ss_pred             CCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEecc
Confidence            988 33344557899999999999999999999999998753

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.74  E-value=1.7e-14  Score=119.41  Aligned_cols=223  Identities=13%  Similarity=0.220  Sum_probs=146.1

Q ss_pred             EEeCCCcEEEEcCCC-Ce--eEEEEeccCccEEEEEEcCCCCEEEEEe-CCCcEEEEECC-CCce--eEEeecccCceeE
Q 023772           35 SCGKDRTIRLWNPHR-GI--HIKTYKSHGREVRDVHVTADNSKLISCG-GDRQIFYWDVS-TGRV--IRKFRGHESEVNA  107 (277)
Q Consensus        35 s~s~d~~v~iwd~~~-~~--~~~~~~~h~~~v~~~~~~~~~~~l~t~s-~d~~v~~wd~~-~~~~--~~~~~~h~~~v~~  107 (277)
                      +...|+.|++|++.+ ++  .+..+. +.+....+.++|++++|+.++ .++.|.+|+++ +++.  +.... .......
T Consensus         7 ~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~   84 (330)
T PRK11028          7 ASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTH   84 (330)
T ss_pred             EcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceE
Confidence            447789999999864 33  445554 345678899999999887664 58899999986 3332  22222 2334567


Q ss_pred             EEEecCCCEEEEEeC-CCcEEEEeCccCCC--cceEeeccccCcEEEEEec--CCeE-EEeecCCcEEEEEccCCcccc-
Q 023772          108 VKFNEYSSVVVSAGY-DQSLRAWDCRSHST--EPIQIIDSFQDSVMSVCLT--KTEI-IGGSVDGTVRTFDIRVGRELS-  180 (277)
Q Consensus       108 i~~~~~~~~l~s~~~-d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~-~~g~~d~~i~i~d~~~~~~~~-  180 (277)
                      +.++|+++.+++++. ++.|.+|++.....  ......... .....+.++  ++.+ ++...++.|.+||+.....+. 
T Consensus        85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~-~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~  163 (330)
T PRK11028         85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGL-EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA  163 (330)
T ss_pred             EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCC-CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence            999999998888764 88999999863211  122222111 122333344  4455 455567999999997633221 


Q ss_pred             -------cCCCCCeeEEEEeCCCCEEEEEec-CCeEEEEECCC--Cc--eEEEEeccc----cceeeeeeEecCCCceEE
Q 023772          181 -------DDLGQPVNCISMSNDGNCILASCL-DSTLRLLDRST--GE--LLQEYKGHI----CKSFKTDCCLTNSDAHVT  244 (277)
Q Consensus       181 -------~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~~wd~~~--~~--~~~~~~~~~----~~~~~~~~~~~~~~~~l~  244 (277)
                             ...+.....+.|+|+|++++++.. +++|.+||+..  ++  .++.+....    .......+.++|++++++
T Consensus       164 ~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ly  243 (330)
T PRK11028        164 QEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLY  243 (330)
T ss_pred             cCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEE
Confidence                   123445678999999999878765 89999999963  32  344433211    111233467899999988


Q ss_pred             eec-CCCeEEEEECcCc
Q 023772          245 GGS-EDGYIYFWDLVDA  260 (277)
Q Consensus       245 sgs-~d~~i~iwd~~~~  260 (277)
                      ++. .++.|.+|++.+.
T Consensus       244 v~~~~~~~I~v~~i~~~  260 (330)
T PRK11028        244 ACDRTASLISVFSVSED  260 (330)
T ss_pred             EecCCCCeEEEEEEeCC
Confidence            875 4789999998654

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=1.3e-15  Score=113.58  Aligned_cols=202  Identities=17%  Similarity=0.235  Sum_probs=141.6

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEECCC----------CceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeC
Q 023772           62 EVRDVHVTADNSKLISCGGDRQIFYWDVST----------GRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDC  131 (277)
Q Consensus        62 ~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~----------~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~  131 (277)
                      .|.+-+++|..++|+.|+.+|+|.++.+.+          ...+-.+++|..++..+.|.  ..++++|+ ||.|+-|..
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W   88 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW   88 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence            466678999999999999999999999852          23455678999999999998  34677765 599999986


Q ss_pred             ccCCC----c-------ceEe--eccccCcEEEEEecCCeEEEeecCCcEEEEEccCCccccc--CCCCCeeEEEEeCCC
Q 023772          132 RSHST----E-------PIQI--IDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSD--DLGQPVNCISMSNDG  196 (277)
Q Consensus       132 ~~~~~----~-------~~~~--~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~  196 (277)
                      +....    +       +.+.  .....-....+.+..+.++.++.|+.+..||+++++....  .+..-+.++.--...
T Consensus        89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~  168 (325)
T KOG0649|consen   89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNAN  168 (325)
T ss_pred             hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccC
Confidence            54221    0       0010  1111122333444455688888999999999999875443  445568888774455


Q ss_pred             CEEEEEecCCeEEEEECCCCceEEEEecccccee------eeeeEecCCCceEEeecCCCeEEEEECcCccceeeec
Q 023772          197 NCILASCLDSTLRLLDRSTGELLQEYKGHICKSF------KTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFK  267 (277)
Q Consensus       197 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~  267 (277)
                      ..+++|++||++|+||.++++.++.+..-.++..      ....++..++.+++.|. .-.+-+|+++..++...|.
T Consensus       169 ~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg-Gp~lslwhLrsse~t~vfp  244 (325)
T KOG0649|consen  169 GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKLSLWHLRSSESTCVFP  244 (325)
T ss_pred             cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC-CCceeEEeccCCCceEEEe
Confidence            5699999999999999999999887654322111      01123445667777665 3468899999998887776

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.73  E-value=2.9e-16  Score=121.45  Aligned_cols=224  Identities=17%  Similarity=0.276  Sum_probs=159.9

Q ss_pred             CcEEEEEEe-------CCCCEEEEEeCCCcEEEEcCCCCeeEEEEec--cCc---cEEEEEEcCCCCEEEEEeCCCcEEE
Q 023772           19 GAVLAARFN-------GDGNYCLSCGKDRTIRLWNPHRGIHIKTYKS--HGR---EVRDVHVTADNSKLISCGGDRQIFY   86 (277)
Q Consensus        19 ~~V~~~~~~-------~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~--h~~---~v~~~~~~~~~~~l~t~s~d~~v~~   86 (277)
                      +.|...+|-       |+..++++.+.|.-|.+||.-+|+....+++  |..   .-.++.|+|+|.+|++| ...+|++
T Consensus       105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirv  183 (406)
T KOG2919|consen  105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRV  183 (406)
T ss_pred             CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEE
Confidence            345565653       6788999999999999999999988777654  333   34689999999999865 6779999


Q ss_pred             EEC-CCCc--eeEEeec-----ccCceeEEEEecCCC-EEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec--
Q 023772           87 WDV-STGR--VIRKFRG-----HESEVNAVKFNEYSS-VVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT--  155 (277)
Q Consensus        87 wd~-~~~~--~~~~~~~-----h~~~v~~i~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--  155 (277)
                      ||+ ..|+  .+++...     ..+-+.+++|+|-.. .++.++.-..+-||.-.  ...+.+.+..+.+.|+.+.+.  
T Consensus       184 Fdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~--~~~pl~llggh~gGvThL~~~ed  261 (406)
T KOG2919|consen  184 FDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD--GRRPLQLLGGHGGGVTHLQWCED  261 (406)
T ss_pred             eeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecC--CCCceeeecccCCCeeeEEeccC
Confidence            999 4443  2222222     366788999999654 88889988888887643  345677888999999887765  


Q ss_pred             CCeEEEee-cCCcEEEEEccCCcccccC-------CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCC-CceEEEEeccc
Q 023772          156 KTEIIGGS-VDGTVRTFDIRVGRELSDD-------LGQPVNCISMSNDGNCILASCLDSTLRLLDRST-GELLQEYKGHI  226 (277)
Q Consensus       156 ~~~~~~g~-~d~~i~i~d~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~  226 (277)
                      ++.+.+|+ .|..|..||+|..+.+...       ..+.|. ....|++++|++|+.||.|++||++. ++.+..+..+.
T Consensus       262 Gn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~-FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~s  340 (406)
T KOG2919|consen  262 GNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRIL-FDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYS  340 (406)
T ss_pred             cCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEE-EecCCCCceeeccCCCccEEEEecCCCCCccccccccc
Confidence            56677765 4778999999976644322       223332 35578999999999999999999987 77666665543


Q ss_pred             cceeeeeeEecCCCceEEeecC
Q 023772          227 CKSFKTDCCLTNSDAHVTGGSE  248 (277)
Q Consensus       227 ~~~~~~~~~~~~~~~~l~sgs~  248 (277)
                      .-  ...+++.|--.+++++|-
T Consensus       341 d~--vNgvslnP~mpilatssG  360 (406)
T KOG2919|consen  341 DT--VNGVSLNPIMPILATSSG  360 (406)
T ss_pred             cc--ccceecCcccceeeeccC
Confidence            21  122345555556666543

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=3.4e-15  Score=128.91  Aligned_cols=245  Identities=20%  Similarity=0.367  Sum_probs=190.8

Q ss_pred             EEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCC---EEEEEeCCCcEEEEECCCCceeEEe
Q 023772           22 LAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNS---KLISCGGDRQIFYWDVSTGRVIRKF   98 (277)
Q Consensus        22 ~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~---~l~t~s~d~~v~~wd~~~~~~~~~~   98 (277)
                      ..-.|++|+++++-+.. ..|+||...|+.++..+..|..++..+.+.|...   ++++++.||.|++||-..+++++++
T Consensus        20 ~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~   98 (792)
T KOG1963|consen   20 SPAVFSNDAKFLFLCTG-NFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTF   98 (792)
T ss_pred             cccccccCCcEEEEeeC-CEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEE
Confidence            34668999998877654 6999999999999999999999999999988654   6779999999999997666544333


Q ss_pred             e-------------------------------------------------------------------------------
Q 023772           99 R-------------------------------------------------------------------------------   99 (277)
Q Consensus        99 ~-------------------------------------------------------------------------------   99 (277)
                      .                                                                               
T Consensus        99 ~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~  178 (792)
T KOG1963|consen   99 DNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIV  178 (792)
T ss_pred             ecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEE
Confidence            0                                                                               


Q ss_pred             ------------------------cccCceeEEEEecCCCEEEEEeCCCcEEEEeCcc--CCCcceEeeccccCcEEEEE
Q 023772          100 ------------------------GHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRS--HSTEPIQIIDSFQDSVMSVC  153 (277)
Q Consensus       100 ------------------------~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~  153 (277)
                                              .|.-.+++.+++|.+++++++..||.|.+|.--.  ........++.|.+.+..+.
T Consensus       179 ~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~  258 (792)
T KOG1963|consen  179 HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLS  258 (792)
T ss_pred             EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeE
Confidence                                    1555578888999999999999999999996433  33445667888878877776


Q ss_pred             ec--CCeEEEeecCCcEEEEEccCCc-ccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccc----
Q 023772          154 LT--KTEIIGGSVDGTVRTFDIRVGR-ELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHI----  226 (277)
Q Consensus       154 ~~--~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~----  226 (277)
                      ++  +.++++|+.++-+.+|.+.+++ ++....+.+|..+.+|||+.+.+...+|..|.+-...+.....++.|-.    
T Consensus       259 fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~  338 (792)
T KOG1963|consen  259 FSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTP  338 (792)
T ss_pred             EecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCc
Confidence            65  5669999999999999998875 3445678899999999999999999999999999876554433333211    


Q ss_pred             -----cceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeec
Q 023772          227 -----CKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFK  267 (277)
Q Consensus       227 -----~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~  267 (277)
                           -....+..++.|.-+.++-.+..|.|.+||+.+.+.+.++.
T Consensus       339 ~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~  384 (792)
T KOG1963|consen  339 STKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQ  384 (792)
T ss_pred             cccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEE
Confidence                 12233445566755667777889999999999888777665

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.72  E-value=1.2e-15  Score=116.48  Aligned_cols=196  Identities=19%  Similarity=0.312  Sum_probs=149.3

Q ss_pred             ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCee-EEEE-----eccCccEEEEEEcC--CCCEEEEEeCCCcEEEE
Q 023772           16 GHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIH-IKTY-----KSHGREVRDVHVTA--DNSKLISCGGDRQIFYW   87 (277)
Q Consensus        16 ~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~-~~~~-----~~h~~~v~~~~~~~--~~~~l~t~s~d~~v~~w   87 (277)
                      .|-+.|.|+.|-|++..|++-. |..|.+|++..+.. ...+     .+|....++-+|+|  +++.+++. .|+++..|
T Consensus       121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~  198 (370)
T KOG1007|consen  121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFW  198 (370)
T ss_pred             HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEE
Confidence            5667999999999999998865 89999999877644 2222     23566778889998  55566654 58999999


Q ss_pred             ECCCCceeEEee-cccCceeEEEEecCCC-EEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCe---EEEe
Q 023772           88 DVSTGRVIRKFR-GHESEVNAVKFNEYSS-VVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE---IIGG  162 (277)
Q Consensus        88 d~~~~~~~~~~~-~h~~~v~~i~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g  162 (277)
                      |+.+.....++. +|...|..++|+|+.+ +|+||+.||.|++||.|.. ..+++.+..|..-+.++.+++.+   +++|
T Consensus       199 D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t-k~pv~el~~HsHWvW~VRfn~~hdqLiLs~  277 (370)
T KOG1007|consen  199 DLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT-KFPVQELPGHSHWVWAVRFNPEHDQLILSG  277 (370)
T ss_pred             EccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC-CccccccCCCceEEEEEEecCccceEEEec
Confidence            999877665553 6888999999999854 6899999999999999875 45777888888888888887643   8899


Q ss_pred             ecCCcEEEEEccCCc---c---------------------c-------ccCCCCCeeEEEEeCCCCEEEE-EecCCeEEE
Q 023772          163 SVDGTVRTFDIRVGR---E---------------------L-------SDDLGQPVNCISMSNDGNCILA-SCLDSTLRL  210 (277)
Q Consensus       163 ~~d~~i~i~d~~~~~---~---------------------~-------~~~~~~~v~~~~~s~~~~~l~~-~~~d~~i~~  210 (277)
                      +.|..+.+|-...-.   .                     +       ...+...|.+++||....++++ -+.||.+.|
T Consensus       278 ~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI  357 (370)
T KOG1007|consen  278 GSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVII  357 (370)
T ss_pred             CCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence            999999988653210   0                     0       1123457999999998887655 488998877


Q ss_pred             EECC
Q 023772          211 LDRS  214 (277)
Q Consensus       211 wd~~  214 (277)
                      =.+.
T Consensus       358 s~V~  361 (370)
T KOG1007|consen  358 SSVP  361 (370)
T ss_pred             ecCC
Confidence            6553

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=3.2e-16  Score=128.96  Aligned_cols=214  Identities=21%  Similarity=0.331  Sum_probs=150.4

Q ss_pred             EEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe-ecccCceeEEEEecC--CCEEEEEeCCCcEEEE
Q 023772           53 IKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKF-RGHESEVNAVKFNEY--SSVVVSAGYDQSLRAW  129 (277)
Q Consensus        53 ~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~-~~h~~~v~~i~~~~~--~~~l~s~~~d~~i~iw  129 (277)
                      ...+.+|.+.|++++|+.+|.+|++||.|-.+.|||.-..+++..+ .+|...|.++.|-|.  .++++||+.|..|++|
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            3467899999999999999999999999999999999877777665 489999999999885  6789999999999999


Q ss_pred             eCccCC--------CcceEeeccccCcEEEEEe---cCCeEEEeecCCcEEEEEccCCccccc----------CCC--CC
Q 023772          130 DCRSHS--------TEPIQIIDSFQDSVMSVCL---TKTEIIGGSVDGTVRTFDIRVGRELSD----------DLG--QP  186 (277)
Q Consensus       130 d~~~~~--------~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~d~~i~i~d~~~~~~~~~----------~~~--~~  186 (277)
                      |+....        .++.....-|...+..+..   .|+.+++++.||+|+-||+|.......          ...  -.
T Consensus       123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie  202 (758)
T KOG1310|consen  123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE  202 (758)
T ss_pred             ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence            997421        1122222333344433333   346699999999999999986322111          111  24


Q ss_pred             eeEEEEeCCC-CEEEEEecCCeEEEEECCC--------C----------ceEEEEe-ccccc------ee---eeeeEec
Q 023772          187 VNCISMSNDG-NCILASCLDSTLRLLDRST--------G----------ELLQEYK-GHICK------SF---KTDCCLT  237 (277)
Q Consensus       187 v~~~~~s~~~-~~l~~~~~d~~i~~wd~~~--------~----------~~~~~~~-~~~~~------~~---~~~~~~~  237 (277)
                      ..|++++|.. .+|+.|+.|-..++||.+.        +          .+++.|. +|.+.      ..   .+-..|+
T Consensus       203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfn  282 (758)
T KOG1310|consen  203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFN  282 (758)
T ss_pred             eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEEC
Confidence            6789999965 5678899999999999421        1          1244333 33211      11   1234578


Q ss_pred             CCCceEEeecCCCeEEEEECcCccceeee
Q 023772          238 NSDAHVTGGSEDGYIYFWDLVDASVVAKF  266 (277)
Q Consensus       238 ~~~~~l~sgs~d~~i~iwd~~~~~~~~~~  266 (277)
                      |+|.-|...-..-.|+++|+..++....+
T Consensus       283 pNGtElLvs~~gEhVYlfdvn~~~~~~~y  311 (758)
T KOG1310|consen  283 PNGTELLVSWGGEHVYLFDVNEDKSPTPY  311 (758)
T ss_pred             CCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence            88765554333447999999987765443

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.71  E-value=3e-16  Score=131.24  Aligned_cols=205  Identities=19%  Similarity=0.297  Sum_probs=153.6

Q ss_pred             cceeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEcCCCCeeE------EEEeccCccEEEEEEcCCCCEEEEEeCCCc
Q 023772           11 ANVLKGHEGAVLAARFNG-DGNYCLSCGKDRTIRLWNPHRGIHI------KTYKSHGREVRDVHVTADNSKLISCGGDRQ   83 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~-~~~~l~s~s~d~~v~iwd~~~~~~~------~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~   83 (277)
                      ...|.+|.+.|+.+.|+| ...+|+|||.|..|+||.+..|...      ..+.+.+-.+.++.|+|...-|+..+..|+
T Consensus        72 i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~  151 (1012)
T KOG1445|consen   72 IGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGS  151 (1012)
T ss_pred             cceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCce
Confidence            456789999999999998 4568899999999999998754221      123334456889999998777888888999


Q ss_pred             EEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcE-EEEEecCC--eEE
Q 023772           84 IFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSV-MSVCLTKT--EII  160 (277)
Q Consensus        84 v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~  160 (277)
                      +++||+.+++.+..+.+|...|.++.|+.||.+++++..|..|+|||.+.. .++++..+.|+..- ..+.+-++  .++
T Consensus       152 v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~-~~piQ~te~H~~~rdsRv~w~Gn~~rli  230 (1012)
T KOG1445|consen  152 VYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRAS-MEPIQTTEGHGGMRDSRVLWAGNWERLI  230 (1012)
T ss_pred             EEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccC-CCccccccccccchhheeeeccchhhhh
Confidence            999999999999999999999999999999999999999999999999864 56777777665431 23445554  466


Q ss_pred             EeecC----CcEEEEEccCCcccc-c---CCCCCeeEEEEeCCCCEE-EEEecCCeEEEEECCCC
Q 023772          161 GGSVD----GTVRTFDIRVGRELS-D---DLGQPVNCISMSNDGNCI-LASCLDSTLRLLDRSTG  216 (277)
Q Consensus       161 ~g~~d----~~i~i~d~~~~~~~~-~---~~~~~v~~~~~s~~~~~l-~~~~~d~~i~~wd~~~~  216 (277)
                      +.+.+    +.+++||.+...... .   ....-+..--|+||.++| ++|-.+.+|+.+.+...
T Consensus       231 sTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~  295 (1012)
T KOG1445|consen  231 STGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDR  295 (1012)
T ss_pred             hcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCC
Confidence            66555    468899987542211 1   112233334578887665 45556778888887554

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.71  E-value=1.8e-15  Score=125.68  Aligned_cols=221  Identities=17%  Similarity=0.231  Sum_probs=156.6

Q ss_pred             eeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCE-EEEEeCCCcEEEE
Q 023772           51 IHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSV-VVSAGYDQSLRAW  129 (277)
Q Consensus        51 ~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~-l~s~~~d~~i~iw  129 (277)
                      .+...+++|.+.|+++...|.|..|++|+.||+|++|.+.+|.+++++. -.+.|.+++|+|.... ++.++.+..+.+-
T Consensus       391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~iv  469 (733)
T KOG0650|consen  391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIV  469 (733)
T ss_pred             eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEe
Confidence            4556789999999999999999999999999999999999999999887 4668999999997653 3333333445554


Q ss_pred             eCccCCC-----------------c------------------ceEeeccccCcEEEEEec--CCeEEEeec---CCcEE
Q 023772          130 DCRSHST-----------------E------------------PIQIIDSFQDSVMSVCLT--KTEIIGGSV---DGTVR  169 (277)
Q Consensus       130 d~~~~~~-----------------~------------------~~~~~~~~~~~~~~~~~~--~~~~~~g~~---d~~i~  169 (277)
                      +..-+..                 +                  .+.+.-.+...+..+.+.  ++++++...   .+.+.
T Consensus       470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl  549 (733)
T KOG0650|consen  470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL  549 (733)
T ss_pred             CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence            4321100                 0                  011112234445555554  455665433   45688


Q ss_pred             EEEccCCcc--cccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeec
Q 023772          170 TFDIRVGRE--LSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGS  247 (277)
Q Consensus       170 i~d~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs  247 (277)
                      |+++...+.  ........+.++.|+|...+|+.++. ..+++||+....+++.+...  .......+++|.|.-|+.|+
T Consensus       550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg--~kwiS~msihp~GDnli~gs  626 (733)
T KOG0650|consen  550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTG--SKWISSMSIHPNGDNLILGS  626 (733)
T ss_pred             EEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcC--CeeeeeeeecCCCCeEEEec
Confidence            888865432  22234567999999999998888764 57999999887776654322  22334456788888899999


Q ss_pred             CCCeEEEEECcCc-cceeeeccCcceeEe
Q 023772          248 EDGYIYFWDLVDA-SVVAKFKAHSLVVKL  275 (277)
Q Consensus       248 ~d~~i~iwd~~~~-~~~~~~~~h~~~v~~  275 (277)
                      .|+.+..+|+.-+ +..++++-|..+++-
T Consensus       627 ~d~k~~WfDldlsskPyk~lr~H~~avr~  655 (733)
T KOG0650|consen  627 YDKKMCWFDLDLSSKPYKTLRLHEKAVRS  655 (733)
T ss_pred             CCCeeEEEEcccCcchhHHhhhhhhhhhh
Confidence            9999999999875 567888888877753

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.70  E-value=1.4e-14  Score=112.03  Aligned_cols=203  Identities=16%  Similarity=0.247  Sum_probs=160.0

Q ss_pred             eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC---eeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEEC-C
Q 023772           15 KGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG---IHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDV-S   90 (277)
Q Consensus        15 ~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~-~   90 (277)
                      .--.++|+|-+|++|+..++.+-+...|-||.....   +..++++.|...|+.++|.|..++|++++.|...++|.. +
T Consensus         7 ~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~   86 (361)
T KOG1523|consen    7 HRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS   86 (361)
T ss_pred             eeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCC
Confidence            334589999999999999999999999999986544   467899999999999999999999999999999999998 3


Q ss_pred             CC--ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcce--EeeccccCcEEEEEecCCe--EEEeec
Q 023772           91 TG--RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPI--QIIDSFQDSVMSVCLTKTE--IIGGSV  164 (277)
Q Consensus        91 ~~--~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~g~~  164 (277)
                      .+  ++.-.+..++...+++.|+|..+.|+.||.-+.|.+|-....+...+  .+...+...+.++++.++.  ++.|+.
T Consensus        87 ~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~  166 (361)
T KOG1523|consen   87 GGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGST  166 (361)
T ss_pred             CCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccccc
Confidence            33  34445667888999999999999999999999999998765432211  1223445667888887765  778999


Q ss_pred             CCcEEEEEccCC------------cc------ccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCc
Q 023772          165 DGTVRTFDIRVG------------RE------LSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGE  217 (277)
Q Consensus       165 d~~i~i~d~~~~------------~~------~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~  217 (277)
                      |+..|+|.....            ..      +..  ..+.-+..+.|+|.|+.|+-.+.|.++.+-|.....
T Consensus       167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence            999999864211            00      111  123458899999999999999999999999986543

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=1.4e-15  Score=121.28  Aligned_cols=194  Identities=21%  Similarity=0.250  Sum_probs=139.7

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeec
Q 023772           64 RDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIID  143 (277)
Q Consensus        64 ~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  143 (277)
                      ..++|+.++..+++++.||++|+|+..+...+.....|..+|.+++|+||++.|++-+.| ..++|+.++........-.
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            678999999999999999999999987777777788899999999999999999999999 8999998875221111100


Q ss_pred             cccCcEEEEEec--C---Ce-EEEe-ecCCcEEEEEccCCcc-----ccc--CCCCCeeEEEEeCCCCEEEEEecCCeEE
Q 023772          144 SFQDSVMSVCLT--K---TE-IIGG-SVDGTVRTFDIRVGRE-----LSD--DLGQPVNCISMSNDGNCILASCLDSTLR  209 (277)
Q Consensus       144 ~~~~~~~~~~~~--~---~~-~~~g-~~d~~i~i~d~~~~~~-----~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~  209 (277)
                      ........|.+.  +   .. +++- .--+.++.||+.....     ...  .-...+++++++++|++++.|+.||.+-
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa  306 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA  306 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence            111111122222  1   11 2222 2234566666543211     111  1124799999999999999999999999


Q ss_pred             EEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcC
Q 023772          210 LLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVD  259 (277)
Q Consensus       210 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~  259 (277)
                      +++..+-+.++..+. .+...++...|+|+.+++++-|.|.++.+-.+.-
T Consensus       307 i~~~~~lq~~~~vk~-aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  307 IYDAKSLQRLQYVKE-AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EEEeceeeeeEeehh-hheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            999988777765442 2245678889999999999999999998887653

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.69  E-value=4.4e-15  Score=115.91  Aligned_cols=241  Identities=19%  Similarity=0.297  Sum_probs=167.9

Q ss_pred             CcEEEEEEeCCCCEEEEEeCCCcEEEEcCC-CCe----eEEEEeccC------------ccEEEEEEcCCCC--EEEEEe
Q 023772           19 GAVLAARFNGDGNYCLSCGKDRTIRLWNPH-RGI----HIKTYKSHG------------REVRDVHVTADNS--KLISCG   79 (277)
Q Consensus        19 ~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~-~~~----~~~~~~~h~------------~~v~~~~~~~~~~--~l~t~s   79 (277)
                      +-|.++.|...|++|+||..+|.|-++.-. ..+    ....++.|.            ..|..+.|.++++  .++...
T Consensus        26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst  105 (433)
T KOG1354|consen   26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST  105 (433)
T ss_pred             cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence            457899999999999999999999999532 221    344555553            4578888887654  577788


Q ss_pred             CCCcEEEEECCCCce-----------------------------------eEEe-ecccCceeEEEEecCCCEEEEEeCC
Q 023772           80 GDRQIFYWDVSTGRV-----------------------------------IRKF-RGHESEVNAVKFNEYSSVVVSAGYD  123 (277)
Q Consensus        80 ~d~~v~~wd~~~~~~-----------------------------------~~~~-~~h~~~v~~i~~~~~~~~l~s~~~d  123 (277)
                      .|++||+|-+.....                                   .+.+ .+|+--|+++.++.|.+.++++ .|
T Consensus       106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-Dd  184 (433)
T KOG1354|consen  106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-DD  184 (433)
T ss_pred             CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-cc
Confidence            999999998742110                                   0111 2588889999999999999875 67


Q ss_pred             CcEEEEeCccCCCcceEeec-------cccCcEEEEEecCCe---EEEeecCCcEEEEEccCCccc------cc-CC---
Q 023772          124 QSLRAWDCRSHSTEPIQIID-------SFQDSVMSVCLTKTE---IIGGSVDGTVRTFDIRVGREL------SD-DL---  183 (277)
Q Consensus       124 ~~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~---~~~g~~d~~i~i~d~~~~~~~------~~-~~---  183 (277)
                      =.|.+|++..... ...+.+       .....+++..+.|.+   ++-.+..|+|++-|+|.....      .. ..   
T Consensus       185 LRINLWnlei~d~-sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~  263 (433)
T KOG1354|consen  185 LRINLWNLEIIDQ-SFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS  263 (433)
T ss_pred             eeeeeccccccCC-ceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence            8899999864321 111211       112234455555533   666788999999999854211      11 10   


Q ss_pred             --------CCCeeEEEEeCCCCEEEEEecCCeEEEEEC-CCCceEEEEecccc-------------ceeeeeeEecCCCc
Q 023772          184 --------GQPVNCISMSNDGNCILASCLDSTLRLLDR-STGELLQEYKGHIC-------------KSFKTDCCLTNSDA  241 (277)
Q Consensus       184 --------~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~-~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~  241 (277)
                              -..|..+.|++.|+|+++-.. -++++||+ ...+++.++..|..             ..-...|+++.++.
T Consensus       264 ~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~  342 (433)
T KOG1354|consen  264 SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS  342 (433)
T ss_pred             chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcc
Confidence                    135788899999999887533 58999999 44677777776631             11235688899999


Q ss_pred             eEEeecCCCeEEEEECcCccc
Q 023772          242 HVTGGSEDGYIYFWDLVDASV  262 (277)
Q Consensus       242 ~l~sgs~d~~i~iwd~~~~~~  262 (277)
                      +++|||-.+..++++...|..
T Consensus       343 ~v~TGsy~n~frvf~~~~gsk  363 (433)
T KOG1354|consen  343 YVMTGSYNNVFRVFNLARGSK  363 (433)
T ss_pred             eEecccccceEEEecCCCCcc
Confidence            999999999999999777644

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.69  E-value=4.9e-14  Score=108.96  Aligned_cols=234  Identities=19%  Similarity=0.356  Sum_probs=158.3

Q ss_pred             cEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCc--cEEEEEEcCCCCEEE-EEeCC------CcEEEEECC
Q 023772           20 AVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGR--EVRDVHVTADNSKLI-SCGGD------RQIFYWDVS   90 (277)
Q Consensus        20 ~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~-t~s~d------~~v~~wd~~   90 (277)
                      ...+++|+.|.. +++++.|.-.|||+.+.-+....-+.+.+  .+..+-|-  .++++ .||.+      .+|.+||-.
T Consensus         7 ~~lsvs~NQD~S-cFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~   83 (346)
T KOG2111|consen    7 KTLSVSFNQDHS-CFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDL   83 (346)
T ss_pred             ceeEEEEccCCc-eEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEecc
Confidence            355699998864 45667778889999876433222222222  22223232  23443 33333      579999977


Q ss_pred             CCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeec--cccCcEEEEEecC-Ce-EEE-eecC
Q 023772           91 TGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIID--SFQDSVMSVCLTK-TE-IIG-GSVD  165 (277)
Q Consensus        91 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~-~~~-g~~d  165 (277)
                      ..+++.++. -..+|.++.+.++  .++.. .++.|++|..... +.....++  ..+....++++.. .. ++- |..-
T Consensus        84 k~~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n-~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~  158 (346)
T KOG2111|consen   84 KERCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDN-PKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKT  158 (346)
T ss_pred             cCcEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCC-hhheeeeecccCCCceEeecCCCCceEEEcCCCcc
Confidence            777877776 5789999999876  44443 4678999987632 22222222  1122333333322 22 332 4455


Q ss_pred             CcEEEEEccCCcc----cccCCCCCeeEEEEeCCCCEEEEEecCCe-EEEEECCCCceEEEEeccccceeeeeeEecCCC
Q 023772          166 GTVRTFDIRVGRE----LSDDLGQPVNCISMSNDGNCILASCLDST-LRLLDRSTGELLQEYKGHICKSFKTDCCLTNSD  240 (277)
Q Consensus       166 ~~i~i~d~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (277)
                      |.|++-|+...+.    +...+...|.|++++-+|..+|++|..|+ |||||..+|+++++++-.......-..+|||+.
T Consensus       159 GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~  238 (346)
T KOG2111|consen  159 GQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNS  238 (346)
T ss_pred             ceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCc
Confidence            8899999875443    23356789999999999999999999996 699999999999998865545556667899999


Q ss_pred             ceEEeecCCCeEEEEECcCcc
Q 023772          241 AHVTGGSEDGYIYFWDLVDAS  261 (277)
Q Consensus       241 ~~l~sgs~d~~i~iwd~~~~~  261 (277)
                      .+|+.+|.-|++.|+.++...
T Consensus       239 s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  239 SWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             cEEEEEcCCCeEEEEEeecCC
Confidence            999999999999999988754

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.68  E-value=9.7e-15  Score=123.03  Aligned_cols=204  Identities=17%  Similarity=0.229  Sum_probs=149.1

Q ss_pred             cccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEE----------EEe---------------------
Q 023772            9 TEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIK----------TYK---------------------   57 (277)
Q Consensus         9 ~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~----------~~~---------------------   57 (277)
                      ...+.|+||++.|.|++|+.||+.++||+.|..|.+|+..-.-.++          .|+                     
T Consensus        44 ~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~q  123 (1081)
T KOG1538|consen   44 TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQ  123 (1081)
T ss_pred             ccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhh
Confidence            4467899999999999999999999999999999999854221111          010                     


Q ss_pred             ----c--cCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--eEEeecccCceeEEEEecCC-----CEEEEEeCCC
Q 023772           58 ----S--HGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRV--IRKFRGHESEVNAVKFNEYS-----SVVVSAGYDQ  124 (277)
Q Consensus        58 ----~--h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~--~~~~~~h~~~v~~i~~~~~~-----~~l~s~~~d~  124 (277)
                          .  -...|.+++|..+|++++-|-.+|+|.+=+-...+.  +..-.+.+++|++++|+|..     ..++......
T Consensus       124 K~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~q  203 (1081)
T KOG1538|consen  124 KSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQ  203 (1081)
T ss_pred             hhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccc
Confidence                1  124577888888999999999999999886543332  22333567899999999863     4677777888


Q ss_pred             cEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCCcEEEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEE
Q 023772          125 SLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSD--DLGQPVNCISMSNDGNCILAS  202 (277)
Q Consensus       125 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~  202 (277)
                      ++..+.+.......... -.+..-+.++.+++..++.|+.|+.+.+|.- .+-.+-+  ...+-|.+++..|++++++.|
T Consensus       204 TLSFy~LsG~~Igk~r~-L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~G  281 (1081)
T KOG1538|consen  204 TLSFYQLSGKQIGKDRA-LNFDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQDSWIWTVQAKPNSQYVVVG  281 (1081)
T ss_pred             eeEEEEecceeeccccc-CCCCchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccceeEEEEEEccCCceEEEE
Confidence            88888775432211111 1234456777788899999999999999863 3322221  345679999999999999999


Q ss_pred             ecCCeEEEEECC
Q 023772          203 CLDSTLRLLDRS  214 (277)
Q Consensus       203 ~~d~~i~~wd~~  214 (277)
                      +.||+|-.|++-
T Consensus       282 CqDGTiACyNl~  293 (1081)
T KOG1538|consen  282 CQDGTIACYNLI  293 (1081)
T ss_pred             EccCeeehhhhH
Confidence            999999999863

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.67  E-value=1.7e-14  Score=128.74  Aligned_cols=224  Identities=17%  Similarity=0.201  Sum_probs=158.2

Q ss_pred             EcCCCCeeEEEEeccCccEEEEEEcCCC-CEEEEEeCCCcEEEEECCCC-------ceeEEeecccCceeEEEEecCCCE
Q 023772           45 WNPHRGIHIKTYKSHGREVRDVHVTADN-SKLISCGGDRQIFYWDVSTG-------RVIRKFRGHESEVNAVKFNEYSSV  116 (277)
Q Consensus        45 wd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~d~~v~~wd~~~~-------~~~~~~~~h~~~v~~i~~~~~~~~  116 (277)
                      |++ .|..+..+..|...+..++.++.. .+++|||.||+||+|++..-       +...++..-.+++..+...+.+..
T Consensus      1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred             CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence            554 478888999999999999998776 89999999999999998531       223344445678889999999999


Q ss_pred             EEEEeCCCcEEEEeCccCCCcc---eE--eec-cccCcEEEEEe----cCC-eEEEeecCCcEEEEEccCCcccccC---
Q 023772          117 VVSAGYDQSLRAWDCRSHSTEP---IQ--IID-SFQDSVMSVCL----TKT-EIIGGSVDGTVRTFDIRVGRELSDD---  182 (277)
Q Consensus       117 l~s~~~d~~i~iwd~~~~~~~~---~~--~~~-~~~~~~~~~~~----~~~-~~~~g~~d~~i~i~d~~~~~~~~~~---  182 (277)
                      +|.++.||.|++.++.......   .+  +.. ...+.+..+..    ... .++.+..-+.|..||+++.......   
T Consensus      1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred             EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence            9999999999999986421111   11  111 11222333321    122 4677777888999999976543321   


Q ss_pred             -CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEec-cccceeeeeeEe-cCCCceE-Eeec-CCCeEEEEEC
Q 023772          183 -LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKG-HICKSFKTDCCL-TNSDAHV-TGGS-EDGYIYFWDL  257 (277)
Q Consensus       183 -~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~l-~sgs-~d~~i~iwd~  257 (277)
                       ..+.|++++.+|.++++++|...|.+-+||++-+.++..+.. +........+++ .+.+... ++|+ ..+.|-+|++
T Consensus      1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred             ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence             235799999999999999999999999999998888876542 222223333333 3444444 4455 6888999999


Q ss_pred             cCccceeeeccC
Q 023772          258 VDASVVAKFKAH  269 (277)
Q Consensus       258 ~~~~~~~~~~~h  269 (277)
                      .+|.+...+-.-
T Consensus      1273 ~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1273 ETGLRQTVLWAS 1284 (1431)
T ss_pred             ccCcceEEEEcC
Confidence            999877777644

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.67  E-value=9.3e-15  Score=111.68  Aligned_cols=194  Identities=18%  Similarity=0.224  Sum_probs=146.0

Q ss_pred             eccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEcCCCCe---eEEEEeccCccEEEEEEcCCC-CEEEEEeCCCcEEEEEC
Q 023772           15 KGHEGAVLAARFNG-DGNYCLSCGKDRTIRLWNPHRGI---HIKTYKSHGREVRDVHVTADN-SKLISCGGDRQIFYWDV   89 (277)
Q Consensus        15 ~~H~~~V~~~~~~~-~~~~l~s~s~d~~v~iwd~~~~~---~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~d~~v~~wd~   89 (277)
                      ..|.+|+++..|+. +.++|.++|-|-++.|||++++.   ....+-+|.++|..++|...+ +.+++.|.||+|++||+
T Consensus       147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDL  226 (364)
T KOG0290|consen  147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDL  226 (364)
T ss_pred             cccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEe
Confidence            35668899999997 67899999999999999999863   356788999999999999855 57899999999999999


Q ss_pred             CCCce---eEEeecccCceeEEEEecCC-CEEEEEeCC-CcEEEEeCccCCCcceEeeccccCcEEEEEecC---CeEEE
Q 023772           90 STGRV---IRKFRGHESEVNAVKFNEYS-SVVVSAGYD-QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK---TEIIG  161 (277)
Q Consensus        90 ~~~~~---~~~~~~h~~~v~~i~~~~~~-~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  161 (277)
                      ...+.   +..=..-..+...++|+++. ++++|-..| ..|.+-|+|.+ ..++..+..|+..|..+.+.|   ..+.+
T Consensus       227 R~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P-~tpva~L~~H~a~VNgIaWaPhS~~hict  305 (364)
T KOG0290|consen  227 RSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP-CTPVARLRNHQASVNGIAWAPHSSSHICT  305 (364)
T ss_pred             cccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCC-CcceehhhcCcccccceEecCCCCceeee
Confidence            86543   22222224567778888754 456654443 56899999875 346777889999999988865   45999


Q ss_pred             eecCCcEEEEEccCCcc--c-----ccCCCCCeeEEEEeC-CCCEEEEEecCCeEEE
Q 023772          162 GSVDGTVRTFDIRVGRE--L-----SDDLGQPVNCISMSN-DGNCILASCLDSTLRL  210 (277)
Q Consensus       162 g~~d~~i~i~d~~~~~~--~-----~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~  210 (277)
                      ++.|....+||+.+...  .     ....++.|+.+.|++ ...+|+.+.. +.+.+
T Consensus       306 aGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~-kklei  361 (364)
T KOG0290|consen  306 AGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFG-KKLEI  361 (364)
T ss_pred             cCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEec-CeeeE
Confidence            99999999999975432  1     112457899999996 4677777654 34443

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.67  E-value=1.7e-14  Score=111.59  Aligned_cols=204  Identities=12%  Similarity=0.183  Sum_probs=158.9

Q ss_pred             EeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCc
Q 023772           56 YKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTG---RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR  132 (277)
Q Consensus        56 ~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~---~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~  132 (277)
                      +..-..+|++.+|+++...++.+-....|.||.....   +..+++..|...|+.++|.|..+.|++|+.|..-++|...
T Consensus         6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~   85 (361)
T KOG1523|consen    6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP   85 (361)
T ss_pred             eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence            3334579999999999999999999999999988755   4678899999999999999999999999999999999984


Q ss_pred             -cCCCcceEeeccccCcEEEEEecCC--eEEEeecCCcEEEEEccCCccc------ccCCCCCeeEEEEeCCCCEEEEEe
Q 023772          133 -SHSTEPIQIIDSFQDSVMSVCLTKT--EIIGGSVDGTVRTFDIRVGREL------SDDLGQPVNCISMSNDGNCILASC  203 (277)
Q Consensus       133 -~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~i~d~~~~~~~------~~~~~~~v~~~~~s~~~~~l~~~~  203 (277)
                       ...-++...+..+...+..+.++|+  .+++|+..+.|.+|=++.....      .......|.+++|+|++-.|++|+
T Consensus        86 ~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs  165 (361)
T KOG1523|consen   86 SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS  165 (361)
T ss_pred             CCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence             3333444455566677777777764  5999999999999887765433      334456799999999999999999


Q ss_pred             cCCeEEEEECCC------------------CceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCcc
Q 023772          204 LDSTLRLLDRST------------------GELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDAS  261 (277)
Q Consensus       204 ~d~~i~~wd~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~  261 (277)
                      .|+..|+|...-                  |++..++..  .....-...|+|.|..|+-.+.|..+.+=|.....
T Consensus       166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~--~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASS--SGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhcc--CCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence            999999987421                  122222221  12344556789999999999999999998876654

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.67  E-value=5.6e-15  Score=121.46  Aligned_cols=206  Identities=14%  Similarity=0.211  Sum_probs=154.1

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEE
Q 023772           30 GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVK  109 (277)
Q Consensus        30 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~  109 (277)
                      .+.++-+++||.+.|-+ +.++.-+...+|.+.+.+-.|+|+|.-|+|++.||.||+|. .+|-+..++.....+|.+++
T Consensus        75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~  152 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCAR  152 (737)
T ss_pred             cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEE
Confidence            45778889999999987 45677778899999999999999999999999999999997 45555555666788999999


Q ss_pred             EecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCe--EEEeecCCcEEEEEccCCcccc-cCCCCC
Q 023772          110 FNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE--IIGGSVDGTVRTFDIRVGRELS-DDLGQP  186 (277)
Q Consensus       110 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~d~~i~i~d~~~~~~~~-~~~~~~  186 (277)
                      |.|+.+.++-|.. +.+.|=.+..+  ..+.....|.+-+.++.+++..  +++|+.|-..++||-.....+. ..+..+
T Consensus       153 W~p~S~~vl~c~g-~h~~IKpL~~n--~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~  229 (737)
T KOG1524|consen  153 WAPNSNSIVFCQG-GHISIKPLAAN--SKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYA  229 (737)
T ss_pred             ECCCCCceEEecC-CeEEEeecccc--cceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccc
Confidence            9999877666544 34555555432  2344567788899999998654  8899999999999965333222 246789


Q ss_pred             eeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEE
Q 023772          187 VNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFW  255 (277)
Q Consensus       187 v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iw  255 (277)
                      |++++|.|+ ..++.+|.. ++|+=..+.|             .+...++|+||.-++.|...|.+.+=
T Consensus       230 ITSva~npd-~~~~v~S~n-t~R~~~p~~G-------------SifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  230 ITSVAFNPE-KDYLLWSYN-TARFSSPRVG-------------SIFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             eeeeeeccc-cceeeeeee-eeeecCCCcc-------------ceEEEEEcCCCceeeccccCceEEEe
Confidence            999999999 556666543 4552212211             23445689999999999988887653

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=3.5e-14  Score=117.66  Aligned_cols=240  Identities=19%  Similarity=0.294  Sum_probs=174.5

Q ss_pred             ccCCcEEEEEEeCCCCEEE-EEeCCCcEEEEcCCCCeeE----------------------------EEEeccC------
Q 023772           16 GHEGAVLAARFNGDGNYCL-SCGKDRTIRLWNPHRGIHI----------------------------KTYKSHG------   60 (277)
Q Consensus        16 ~H~~~V~~~~~~~~~~~l~-s~s~d~~v~iwd~~~~~~~----------------------------~~~~~h~------   60 (277)
                      .|...-+.+..+|||+||+ ||-.-..|++||+..-...                            ++++-|.      
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy  128 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY  128 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence            6888899999999999877 6788899999997642211                            0111111      


Q ss_pred             -----ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCC
Q 023772           61 -----REVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHS  135 (277)
Q Consensus        61 -----~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~  135 (277)
                           .....++++.-+.-|+.++....|.=++++.|+-+..|.-....++.+..++-..+|++|+.||.|..||.+...
T Consensus       129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks  208 (703)
T KOG2321|consen  129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS  208 (703)
T ss_pred             eeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhh
Confidence                 123344454444456667777789999999999888888888999999999999999999999999999998643


Q ss_pred             CcceEe----ecccc-----CcEEEEEecCC--eEEEeecCCcEEEEEccCCccccc-CC--CCCeeEEEEeCC--CCEE
Q 023772          136 TEPIQI----IDSFQ-----DSVMSVCLTKT--EIIGGSVDGTVRTFDIRVGRELSD-DL--GQPVNCISMSND--GNCI  199 (277)
Q Consensus       136 ~~~~~~----~~~~~-----~~~~~~~~~~~--~~~~g~~d~~i~i~d~~~~~~~~~-~~--~~~v~~~~~s~~--~~~l  199 (277)
                      .....-    +..++     ..+.++.++.+  .+++|+.+|.+.|||++..+++.. .+  .-+|..+.|.+.  ++.+
T Consensus       209 rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v  288 (703)
T KOG2321|consen  209 RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKV  288 (703)
T ss_pred             hheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceE
Confidence            221111    11222     23778888654  488999999999999998876543 23  458899999775  3334


Q ss_pred             EEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcC
Q 023772          200 LASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVD  259 (277)
Q Consensus       200 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~  259 (277)
                      + +.....++|||-.+|+....+...   .-..+.|+-|+..++.+|-++..+..|=+..
T Consensus       289 ~-S~Dk~~~kiWd~~~Gk~~asiEpt---~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  289 V-SMDKRILKIWDECTGKPMASIEPT---SDLNDFCFVPGSGMFFTANESSKMHTYYIPS  344 (703)
T ss_pred             E-ecchHHhhhcccccCCceeecccc---CCcCceeeecCCceEEEecCCCcceeEEccc
Confidence            4 445668999999999887665432   2245677889999999998888888777665

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.65  E-value=5.3e-15  Score=111.54  Aligned_cols=221  Identities=18%  Similarity=0.178  Sum_probs=154.7

Q ss_pred             eEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEee-cccCceeEEEEecCCCEEEEEeCCCcEEEEe
Q 023772           52 HIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFR-GHESEVNAVKFNEYSSVVVSAGYDQSLRAWD  130 (277)
Q Consensus        52 ~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd  130 (277)
                      +...++.|.+.|+++.|..+ .+|++|...|.|++|++.+.+....++ .|+..|+.+...|+ ..+.+-+.|+.+.+|+
T Consensus         6 P~fvLRp~~~~v~s~~fqa~-~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~   83 (323)
T KOG0322|consen    6 PFFVLRPHSSSVTSVLFQAN-ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT   83 (323)
T ss_pred             CeeEeccccchheehhhccc-hhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence            45567789999999999866 469999999999999999988888888 56788999998887 5677889999999999


Q ss_pred             CccCCC----------------------cce-Eee--c--------------------------cccCcEEEEEec---C
Q 023772          131 CRSHST----------------------EPI-QII--D--------------------------SFQDSVMSVCLT---K  156 (277)
Q Consensus       131 ~~~~~~----------------------~~~-~~~--~--------------------------~~~~~~~~~~~~---~  156 (277)
                      +.....                      +.. +..  .                          ...+.+......   .
T Consensus        84 ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~  163 (323)
T KOG0322|consen   84 IAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACG  163 (323)
T ss_pred             ccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccccc
Confidence            753110                      000 000  0                          001112222211   1


Q ss_pred             C--eEEEeecCCcEEEEEccCCccc----------c--cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCC--CceE-
Q 023772          157 T--EIIGGSVDGTVRTFDIRVGREL----------S--DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRST--GELL-  219 (277)
Q Consensus       157 ~--~~~~g~~d~~i~i~d~~~~~~~----------~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~--~~~~-  219 (277)
                      .  .++.|-.+|.+.+||+.++..+          .  ..+.++|.++.+.+.-..=++|+.+..+..|++..  +.+. 
T Consensus       164 s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~  243 (323)
T KOG0322|consen  164 STFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQI  243 (323)
T ss_pred             ceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccc
Confidence            1  2567788899999999886321          1  13467899999987544446778888888888743  3221 


Q ss_pred             -EEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772          220 -QEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL  276 (277)
Q Consensus       220 -~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  276 (277)
                       .++.-.. . -.....+-||++.+|+++.|+.||+|+.++...+..++.|++.|..+
T Consensus       244 ~~e~~lkn-p-Gv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~v  299 (323)
T KOG0322|consen  244 RKEITLKN-P-GVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAV  299 (323)
T ss_pred             cceEEecC-C-CccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEE
Confidence             1121111 1 11223456899999999999999999999999999999999988765

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=5.7e-14  Score=111.61  Aligned_cols=252  Identities=10%  Similarity=0.134  Sum_probs=175.6

Q ss_pred             CCccccccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEecc--CccEEEEEEcCCCCEEEEEeCC
Q 023772            4 SDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSH--GREVRDVHVTADNSKLISCGGD   81 (277)
Q Consensus         4 ~~~~~~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~t~s~d   81 (277)
                      +.+|.+....-..|...|.|+.|+.....+++|+.+++|...|+++.+.+..+...  .+.|..+..+|..+.|++.+.+
T Consensus        91 ~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~  170 (609)
T KOG4227|consen   91 RKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRA  170 (609)
T ss_pred             hcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecC
Confidence            33444444333457789999999999999999999999999999998877777532  3589999999999999999999


Q ss_pred             CcEEEEECCCCc-eeEE--eecccCceeEEEEecC-CCEEEEEeCCCcEEEEeCccCCCcceE--eeccccCcE---EE-
Q 023772           82 RQIFYWDVSTGR-VIRK--FRGHESEVNAVKFNEY-SSVVVSAGYDQSLRAWDCRSHSTEPIQ--IIDSFQDSV---MS-  151 (277)
Q Consensus        82 ~~v~~wd~~~~~-~~~~--~~~h~~~v~~i~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~---~~-  151 (277)
                      +.|.+||..... .+.-  ..........+.|+|. ..+|++.+..+-+.+||.+.+.....+  ...+.+...   .. 
T Consensus       171 ~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~  250 (609)
T KOG4227|consen  171 KLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGS  250 (609)
T ss_pred             ceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhhe
Confidence            999999987544 2222  2223445677888886 457888888899999999865322111  011112211   22 


Q ss_pred             -EEecCCeEEEeecCCcEEEEEccCCcccccCCC---------CCeeEEEEeCCCCEEEEEecCCeEEEEECCCC-----
Q 023772          152 -VCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLG---------QPVNCISMSNDGNCILASCLDSTLRLLDRSTG-----  216 (277)
Q Consensus       152 -~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~-----  216 (277)
                       +..+++++++--....-.+||+-+.+.+.....         ..+.+++|-.+-. +++|+.+-.|++|.+...     
T Consensus       251 ~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G  329 (609)
T KOG4227|consen  251 LWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYG  329 (609)
T ss_pred             eeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccC
Confidence             233456677666666777888877654332211         2467788876654 899999999999986321     


Q ss_pred             ------------------ceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECc
Q 023772          217 ------------------ELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLV  258 (277)
Q Consensus       217 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~  258 (277)
                                        +....++||.  .+...+-|+|...+|++.+..+.+++|.-.
T Consensus       330 ~~~IG~~~~~~~~~~~i~~~~~VLrGHR--Sv~NQVRF~~H~~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  330 FTQIGHDEEEMPSEIFIEKELTVLRGHR--SVPNQVRFSQHNNLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             ccccCcchhhCchhheecceeEEEeccc--ccccceeecCCcceEeccchhhheeccccc
Confidence                              1234456663  344556688888899998999999999743

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=2.2e-13  Score=116.21  Aligned_cols=213  Identities=12%  Similarity=0.113  Sum_probs=133.9

Q ss_pred             ccceeeccCCcEEEEEEeCCCCEEEEEe---CCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEE-eCCC--c
Q 023772           10 EANVLKGHEGAVLAARFNGDGNYCLSCG---KDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISC-GGDR--Q   83 (277)
Q Consensus        10 ~~~~l~~H~~~V~~~~~~~~~~~l~s~s---~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~-s~d~--~   83 (277)
                      ....+..+...+...+|+|||+.|+..+   .+..+.+|++.+++..... ...+.+....|+|++++|+.. +.++  .
T Consensus       190 ~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPDG~~La~~~~~~g~~~  268 (429)
T PRK03629        190 NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPDGSKLAFALSKTGSLN  268 (429)
T ss_pred             CCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECCCCCEEEEEEcCCCCcE
Confidence            3444566777899999999999988654   3457899999887543322 223345578999999988754 4444  5


Q ss_pred             EEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCC-CcEEEE--eCccCCCcceEeeccccCcEEEEEecCCeEE
Q 023772           84 IFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYD-QSLRAW--DCRSHSTEPIQIIDSFQDSVMSVCLTKTEII  160 (277)
Q Consensus        84 v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d-~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (277)
                      |.+||+++++..+ +..+...+....|+|+++.|+..+.+ +...+|  |+.......+ ...........+.+++..++
T Consensus       269 I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~l-t~~~~~~~~~~~SpDG~~Ia  346 (429)
T PRK03629        269 LYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRI-TWEGSQNQDADVSSDGKFMV  346 (429)
T ss_pred             EEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEe-ecCCCCccCEEECCCCCEEE
Confidence            8899998877543 44445567789999999988776653 455555  5443322111 11111111233344455665


Q ss_pred             EeecC---CcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecCCe---EEEEECCCCceEEEEeccc
Q 023772          161 GGSVD---GTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDST---LRLLDRSTGELLQEYKGHI  226 (277)
Q Consensus       161 ~g~~d---~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---i~~wd~~~~~~~~~~~~~~  226 (277)
                      ..+.+   ..|.+||+.+++..............|+|||++|+.++.++.   ++++++. +...+.+.++.
T Consensus       347 ~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~  417 (429)
T PRK03629        347 MVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATD  417 (429)
T ss_pred             EEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccCC
Confidence            54433   358889987765322111222345789999999999888774   6777774 55555565543

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.62  E-value=1.9e-15  Score=124.04  Aligned_cols=119  Identities=25%  Similarity=0.377  Sum_probs=105.5

Q ss_pred             ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 023772           16 GHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVI   95 (277)
Q Consensus        16 ~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~   95 (277)
                      --+++|+..+|++||++||+.|.||.+||+|..+.+++...+.--+...|++|+||+++|++|+.|.-|.||.++..+++
T Consensus       288 ~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVV  367 (636)
T KOG2394|consen  288 IGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVV  367 (636)
T ss_pred             eccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEE
Confidence            34568899999999999999999999999999888777777767789999999999999999999999999999999999


Q ss_pred             EEeecccCceeEEEEecC------------------------------------------------CCEEEEEeCCCcEE
Q 023772           96 RKFRGHESEVNAVKFNEY------------------------------------------------SSVVVSAGYDQSLR  127 (277)
Q Consensus        96 ~~~~~h~~~v~~i~~~~~------------------------------------------------~~~l~s~~~d~~i~  127 (277)
                      ..-++|++.|+.++|.|-                                                .-+|.+.+.|.++.
T Consensus       368 ARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlc  447 (636)
T KOG2394|consen  368 ARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLC  447 (636)
T ss_pred             EeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEE
Confidence            999999999999999820                                                02578889999999


Q ss_pred             EEeCccC
Q 023772          128 AWDCRSH  134 (277)
Q Consensus       128 iwd~~~~  134 (277)
                      +||+...
T Consensus       448 LWDlteD  454 (636)
T KOG2394|consen  448 LWDLTED  454 (636)
T ss_pred             EEecchh
Confidence            9998643

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=5e-13  Score=114.55  Aligned_cols=205  Identities=12%  Similarity=0.049  Sum_probs=135.7

Q ss_pred             cccceeeccCCcEEEEEEeCCCCEEEEEeC---CCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEE-EEeCCCc-
Q 023772            9 TEANVLKGHEGAVLAARFNGDGNYCLSCGK---DRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLI-SCGGDRQ-   83 (277)
Q Consensus         9 ~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~---d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-t~s~d~~-   83 (277)
                      .....+..|.+.+.+.+|+|||+.|+..+.   +..|.+||+.+++.. .+..+.+.+....|+|+++.|+ +.+.++. 
T Consensus       192 ~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~  270 (435)
T PRK05137        192 ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNT  270 (435)
T ss_pred             CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCc
Confidence            344557788899999999999999887653   468999999887653 4445566788899999999875 5555655 


Q ss_pred             -EEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeC-CC--cEEEEeCccCCCcceEeeccccCcE--EEEEecCC
Q 023772           84 -IFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGY-DQ--SLRAWDCRSHSTEPIQIIDSFQDSV--MSVCLTKT  157 (277)
Q Consensus        84 -v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~  157 (277)
                       |.+||+++++.. .+..+........|+|+++.++..+. +|  .|.++|+.......+.   ......  ..+.++++
T Consensus       271 ~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt---~~~~~~~~~~~SpdG~  346 (435)
T PRK05137        271 DIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRIS---FGGGRYSTPVWSPRGD  346 (435)
T ss_pred             eEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEee---cCCCcccCeEECCCCC
Confidence             777798877653 45556666677899999998877663 33  5777786544322221   112222  23444555


Q ss_pred             eEEEeecC---CcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecC------CeEEEEECCCCce
Q 023772          158 EIIGGSVD---GTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLD------STLRLLDRSTGEL  218 (277)
Q Consensus       158 ~~~~g~~d---~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------~~i~~wd~~~~~~  218 (277)
                      .++....+   ..|.+||+..+..........+....|+|+|++|+..+.+      ..++++|+..++.
T Consensus       347 ~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~  416 (435)
T PRK05137        347 LIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE  416 (435)
T ss_pred             EEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence            66654433   3577788754432222222346678999999988765543      2577888865543

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.62  E-value=1.4e-13  Score=108.39  Aligned_cols=119  Identities=13%  Similarity=0.200  Sum_probs=104.0

Q ss_pred             ccCCcEEEEEEeCCCCEEEE--EeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCc-EEEEECCCC
Q 023772           16 GHEGAVLAARFNGDGNYCLS--CGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQ-IFYWDVSTG   92 (277)
Q Consensus        16 ~H~~~V~~~~~~~~~~~l~s--~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~-v~~wd~~~~   92 (277)
                      -|...+.++.+++.+.+++-  .-.-|.|.+||..+-+...++++|.+++-+++|+++|.+|+|+|..|+ |+|+.+.+|
T Consensus       127 ~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G  206 (391)
T KOG2110|consen  127 PNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG  206 (391)
T ss_pred             CCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc
Confidence            35666777777777788883  334599999999999999999999999999999999999999999998 699999999


Q ss_pred             ceeEEeeccc--CceeEEEEecCCCEEEEEeCCCcEEEEeCccC
Q 023772           93 RVIRKFRGHE--SEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSH  134 (277)
Q Consensus        93 ~~~~~~~~h~--~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~  134 (277)
                      +.+.+|+...  ..|.+++|+++..+|++.|..++|.+|.+...
T Consensus       207 ~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  207 QKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             cEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence            9999998653  46789999999999999999999999998654

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.62  E-value=5.8e-15  Score=119.32  Aligned_cols=223  Identities=18%  Similarity=0.245  Sum_probs=165.6

Q ss_pred             EEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEec--------------------------------------cCccE
Q 023772           22 LAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKS--------------------------------------HGREV   63 (277)
Q Consensus        22 ~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~--------------------------------------h~~~v   63 (277)
                      ..+.|+.+|+.|+-|+.-|.|..+|..++.+...+..                                      ....|
T Consensus       133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~~~v  212 (545)
T KOG1272|consen  133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRHIRV  212 (545)
T ss_pred             eeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhcCch
Confidence            4688899999999999999999999887665443320                                      12456


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeec
Q 023772           64 RDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIID  143 (277)
Q Consensus        64 ~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  143 (277)
                      ..+.|.|-.-+|++++..|.++.-|+.+|+.+..+..-.+++..|.-+|-...+-+|..+|+|.+|.+...  ++...+.
T Consensus       213 ~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk--ePLvKiL  290 (545)
T KOG1272|consen  213 ARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK--EPLVKIL  290 (545)
T ss_pred             hhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc--chHHHHH
Confidence            77788898888999999999999999999999999888889999999999999999999999999998754  4455555


Q ss_pred             cccCcEEEEEec--CCeEEEeecCCcEEEEEccCCcccccC-CCCCeeEEEEeCCCCEEEEEecCCeEEEEEC-CC--Cc
Q 023772          144 SFQDSVMSVCLT--KTEIIGGSVDGTVRTFDIRVGRELSDD-LGQPVNCISMSNDGNCILASCLDSTLRLLDR-ST--GE  217 (277)
Q Consensus       144 ~~~~~~~~~~~~--~~~~~~g~~d~~i~i~d~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~-~~--~~  217 (277)
                      .|..++.++.++  +.++++.+.|+.++|||+|...++... ...+...++||..|  +++.+....+.+|-- ..  +.
T Consensus       291 cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~  368 (545)
T KOG1272|consen  291 CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGH  368 (545)
T ss_pred             hcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc--ceeeecCCeeeeehhhhcCCCC
Confidence            677777777665  567999999999999999987765443 24677888998776  445555667999953 22  23


Q ss_pred             eEEEEeccccceeeeeeEecCCCceEEeecC
Q 023772          218 LLQEYKGHICKSFKTDCCLTNSDAHVTGGSE  248 (277)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~  248 (277)
                      ...-|..|.....+...-|-|-+..|-.|..
T Consensus       369 ~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~  399 (545)
T KOG1272|consen  369 GETPYMNHRCGGPVEDLRFCPYEDVLGIGHA  399 (545)
T ss_pred             CCcchhhhccCcccccceeccHHHeeecccc
Confidence            3344555544433333334443444444433

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.61  E-value=1.5e-13  Score=108.96  Aligned_cols=243  Identities=16%  Similarity=0.212  Sum_probs=167.3

Q ss_pred             CCcEEEEEEeCCC--CEEEEEeCCCcEEEEcCCCCeeEEE------EeccCccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 023772           18 EGAVLAARFNGDG--NYCLSCGKDRTIRLWNPHRGIHIKT------YKSHGREVRDVHVTADNSKLISCGGDRQIFYWDV   89 (277)
Q Consensus        18 ~~~V~~~~~~~~~--~~l~s~s~d~~v~iwd~~~~~~~~~------~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~   89 (277)
                      ...|..++|..++  +.+..++.|..+.........+...      .....++|..++..  +..|++|-.+|.+.+|..
T Consensus        55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~  132 (412)
T KOG3881|consen   55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHD  132 (412)
T ss_pred             hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEec
Confidence            4457777787544  5677777888888887665544333      23334566666554  467899999999999998


Q ss_pred             CCCc----eeEEeecccCceeEEEEecC-CCEEEEEeCC--CcEEEEeCccCCCcceEeecccc-------CcE--EEEE
Q 023772           90 STGR----VIRKFRGHESEVNAVKFNEY-SSVVVSAGYD--QSLRAWDCRSHSTEPIQIIDSFQ-------DSV--MSVC  153 (277)
Q Consensus        90 ~~~~----~~~~~~~h~~~v~~i~~~~~-~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~~~~-------~~~--~~~~  153 (277)
                      +.+.    ....+..+ .++..+.-.+. ...+++||..  ..+++||+.+.  .++......+       -++  ..+.
T Consensus       133 k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~--~qiw~aKNvpnD~L~LrVPvW~tdi~  209 (412)
T KOG3881|consen  133 KSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS--KQIWSAKNVPNDRLGLRVPVWITDIR  209 (412)
T ss_pred             cCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccc--eeeeeccCCCCccccceeeeeeccce
Confidence            8432    22233333 34444544444 3466779988  88999998753  2222111111       111  1222


Q ss_pred             e---c-CCeEEEeecCCcEEEEEccCCccccc---CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEE-Eecc
Q 023772          154 L---T-KTEIIGGSVDGTVRTFDIRVGRELSD---DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQE-YKGH  225 (277)
Q Consensus       154 ~---~-~~~~~~g~~d~~i~i~d~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~-~~~~  225 (277)
                      |   + ...+++++.-+.+|+||.+.++....   ....++.++...|.++++++|-.-+.+..||.+.++.... |.+-
T Consensus       210 Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~  289 (412)
T KOG3881|consen  210 FLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI  289 (412)
T ss_pred             ecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc
Confidence            2   1 34599999999999999998765432   3457899999999999999999999999999999998876 5555


Q ss_pred             ccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeec
Q 023772          226 ICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFK  267 (277)
Q Consensus       226 ~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~  267 (277)
                      ....  ......|...++++++-|+.+||+|+.+.+++++..
T Consensus       290 tGsi--rsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY  329 (412)
T KOG3881|consen  290 TGSI--RSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY  329 (412)
T ss_pred             cCCc--ceEEEcCCCceEEeeccceeEEEeecccchhhhhhh
Confidence            4333  334457888999999999999999999977776554

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=4.2e-13  Score=114.85  Aligned_cols=211  Identities=13%  Similarity=0.136  Sum_probs=135.4

Q ss_pred             cccceeeccCCcEEEEEEeCCCCEEEEEeCC---CcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEE-EEeCCC--
Q 023772            9 TEANVLKGHEGAVLAARFNGDGNYCLSCGKD---RTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLI-SCGGDR--   82 (277)
Q Consensus         9 ~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d---~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-t~s~d~--   82 (277)
                      .....+..|...+.+.+|+|||+.|+..+.+   ..|.+||+.+++... +....+...+..|+|++++|+ +.+.++  
T Consensus       194 ~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~  272 (433)
T PRK04922        194 YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNP  272 (433)
T ss_pred             CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCc
Confidence            3345566788889999999999999987643   469999998876533 333344556789999999775 555555  


Q ss_pred             cEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeC-CCc--EEEEeCccCCCcceEeeccccCcEEEEEecCCeE
Q 023772           83 QIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGY-DQS--LRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEI  159 (277)
Q Consensus        83 ~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (277)
                      .|.+||+.+++.. .+..+........|+|+++.++.++. +|.  |.++|+.......+. ..........+.++++.+
T Consensus       273 ~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt-~~g~~~~~~~~SpDG~~I  350 (433)
T PRK04922        273 EIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT-FQGNYNARASVSPDGKKI  350 (433)
T ss_pred             eEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee-cCCCCccCEEECCCCCEE
Confidence            5999999887753 45555555567899999998877663 455  555565443322221 121111123444556666


Q ss_pred             EEeecCC---cEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecC---CeEEEEECCCCceEEEEe
Q 023772          160 IGGSVDG---TVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLD---STLRLLDRSTGELLQEYK  223 (277)
Q Consensus       160 ~~g~~d~---~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~~wd~~~~~~~~~~~  223 (277)
                      +..+.++   .|.+||+..++......+.......|+|+|++++..+.+   +.|++++.. +...+.+.
T Consensus       351 a~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~  419 (433)
T PRK04922        351 AMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLV  419 (433)
T ss_pred             EEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcc
Confidence            6544332   588999877654322222234456899999988776653   357788885 33444443

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.60  E-value=1.7e-13  Score=108.67  Aligned_cols=203  Identities=17%  Similarity=0.302  Sum_probs=149.5

Q ss_pred             eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCe----eEEEEeccCccEEEEEEcCCCCEEEE-EeCC--CcEEE
Q 023772           14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI----HIKTYKSHGREVRDVHVTADNSKLIS-CGGD--RQIFY   86 (277)
Q Consensus        14 l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~l~t-~s~d--~~v~~   86 (277)
                      ..+-.++|..+...  ...|++|-.+|.+++|....+.    .+..+..+ ..+..+.-.+....|++ ||..  ..+++
T Consensus       101 ~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lki  177 (412)
T KOG3881|consen  101 VSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKI  177 (412)
T ss_pred             cccccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceee
Confidence            34445666666544  3478899999999999877432    23334433 45666666676666654 8888  88999


Q ss_pred             EECCCCceeEEeec-------ccC--ceeEEEEecC--CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEe-
Q 023772           87 WDVSTGRVIRKFRG-------HES--EVNAVKFNEY--SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCL-  154 (277)
Q Consensus        87 wd~~~~~~~~~~~~-------h~~--~v~~i~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-  154 (277)
                      ||+++.+.+.+-+.       -.-  .++++.|.+.  ...|++++.-+.+++||.+.+ ..|+..+.....++.++.. 
T Consensus       178 wdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q-RRPV~~fd~~E~~is~~~l~  256 (412)
T KOG3881|consen  178 WDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQ-RRPVAQFDFLENPISSTGLT  256 (412)
T ss_pred             eecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCccc-CcceeEeccccCcceeeeec
Confidence            99998866554332       122  3457778877  789999999999999999854 4566666555555555554 


Q ss_pred             -cCCeEEEeecCCcEEEEEccCCccccc---CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEE
Q 023772          155 -TKTEIIGGSVDGTVRTFDIRVGRELSD---DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQ  220 (277)
Q Consensus       155 -~~~~~~~g~~d~~i~i~d~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~  220 (277)
                       +.+.+++|..-+.+..||++.++....   .....++++-.+|.+.++++++.|+.+||+|.++.+++.
T Consensus       257 p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~  326 (412)
T KOG3881|consen  257 PSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLH  326 (412)
T ss_pred             CCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhh
Confidence             556799999999999999999876544   345689999999999999999999999999999866653

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.60  E-value=1.8e-13  Score=103.84  Aligned_cols=154  Identities=16%  Similarity=0.250  Sum_probs=104.9

Q ss_pred             EEEEecCCCEEEEEeC----------CCcEEEEeCccCCCcceEeec-cccCcEEEEEecCCe--E--EEeecCCcEEEE
Q 023772          107 AVKFNEYSSVVVSAGY----------DQSLRAWDCRSHSTEPIQIID-SFQDSVMSVCLTKTE--I--IGGSVDGTVRTF  171 (277)
Q Consensus       107 ~i~~~~~~~~l~s~~~----------d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~--~~g~~d~~i~i~  171 (277)
                      .+.|+++|+.|+.-..          -+...+|-++.... +...+. ....++..+.++|+.  +  +.|..++.+.+|
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~-~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI-PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC-ccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            3566666655433221          23455565543322 222222 223458888887653  4  445677899999


Q ss_pred             EccCCcccccCCCCCeeEEEEeCCCCEEEEEecC---CeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeec-
Q 023772          172 DIRVGRELSDDLGQPVNCISMSNDGNCILASCLD---STLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGS-  247 (277)
Q Consensus       172 d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs-  247 (277)
                      |++ ++.+......+++.+.|+|+|++|++++.+   |.+.+||.++.+.+..+...    ....+.++|+|+++++++ 
T Consensus        89 d~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~----~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen   89 DVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS----DATDVEWSPDGRYLATATT  163 (194)
T ss_pred             cCc-ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC----cEEEEEEcCCCCEEEEEEe
Confidence            997 444444445688999999999999998754   56999999988888776533    246678999999999875 


Q ss_pred             -----CCCeEEEEECcCccceeeec
Q 023772          248 -----EDGYIYFWDLVDASVVAKFK  267 (277)
Q Consensus       248 -----~d~~i~iwd~~~~~~~~~~~  267 (277)
                           .|+.++||+.. |+++.+..
T Consensus       164 ~~r~~~dng~~Iw~~~-G~~l~~~~  187 (194)
T PF08662_consen  164 SPRLRVDNGFKIWSFQ-GRLLYKKP  187 (194)
T ss_pred             ccceeccccEEEEEec-CeEeEecc
Confidence                 38999999985 77766544

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.59  E-value=1.7e-13  Score=117.63  Aligned_cols=200  Identities=18%  Similarity=0.188  Sum_probs=147.0

Q ss_pred             eccCCcEEEEEEeCCCCE--EEEEeCCCcEEEEcCCCCee------EEEEe------ccCccEEEEEEcCCC-CEEEEEe
Q 023772           15 KGHEGAVLAARFNGDGNY--CLSCGKDRTIRLWNPHRGIH------IKTYK------SHGREVRDVHVTADN-SKLISCG   79 (277)
Q Consensus        15 ~~H~~~V~~~~~~~~~~~--l~s~s~d~~v~iwd~~~~~~------~~~~~------~h~~~v~~~~~~~~~-~~l~t~s   79 (277)
                      ..|..+|..+.|-.+..-  ++|+|.||.|..|++..-..      .....      .-...+++++|.+.. ..++.|+
T Consensus       288 ~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGT  367 (555)
T KOG1587|consen  288 VSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGT  367 (555)
T ss_pred             ccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEc
Confidence            469999999999875544  99999999999998653211      11111      123468899998754 5688899


Q ss_pred             CCCcEEEEE---CCCCc-----eeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEE
Q 023772           80 GDRQIFYWD---VSTGR-----VIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMS  151 (277)
Q Consensus        80 ~d~~v~~wd---~~~~~-----~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  151 (277)
                      .+|.|..=.   .....     ....+..|.++|.++.++|....++..+.|.++++|..... ..+...+......+.+
T Consensus       368 e~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~-~~Pl~~~~~~~~~v~~  446 (555)
T KOG1587|consen  368 EEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVI-ASPLLSLDSSPDYVTD  446 (555)
T ss_pred             CCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCC-CCcchhhhhccceeee
Confidence            999887733   22222     23456678999999999999877666666999999987632 2355556666777888


Q ss_pred             EEecCCe---EEEeecCCcEEEEEccCCcccccC----CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCC
Q 023772          152 VCLTKTE---IIGGSVDGTVRTFDIRVGRELSDD----LGQPVNCISMSNDGNCILASCLDSTLRLLDRST  215 (277)
Q Consensus       152 ~~~~~~~---~~~g~~d~~i~i~d~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~  215 (277)
                      +.+++..   ++++..||.|.+||+.....-+..    .....+.+.|++.|+.|++|...|.+++|++..
T Consensus       447 vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  447 VAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             eEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            9988765   888999999999999765432211    134567788898999999999999999999964

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=3.9e-12  Score=108.62  Aligned_cols=225  Identities=16%  Similarity=0.120  Sum_probs=141.9

Q ss_pred             CcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEe---CCCcEEEEECCCCceeEEeecccCceeEEEEecCCCE
Q 023772           40 RTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCG---GDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSV  116 (277)
Q Consensus        40 ~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s---~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~  116 (277)
                      ..|.+||..... .+.+..+...+.+..|+|+++.|+..+   .+..+.+||+.+++... +......+....|+|+++.
T Consensus       179 ~~l~~~d~dg~~-~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~  256 (429)
T PRK03629        179 YELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSK  256 (429)
T ss_pred             eeEEEEcCCCCC-CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCE
Confidence            368888876443 334445667899999999999988654   24579999998875432 2222333456899999998


Q ss_pred             EEEE-eCCC--cEEEEeCccCCCcceEeeccccCcEEEEEec--CCeEEEeec-CCcEEEE--EccCCcccc-cCCCCCe
Q 023772          117 VVSA-GYDQ--SLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT--KTEIIGGSV-DGTVRTF--DIRVGRELS-DDLGQPV  187 (277)
Q Consensus       117 l~s~-~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~-d~~i~i~--d~~~~~~~~-~~~~~~v  187 (277)
                      |+.. +.+|  .|.+||+.+....  + +...........++  ++.++..+. ++...+|  |+..++... .......
T Consensus       257 La~~~~~~g~~~I~~~d~~tg~~~--~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~  333 (429)
T PRK03629        257 LAFALSKTGSLNLYVMDLASGQIR--Q-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQN  333 (429)
T ss_pred             EEEEEcCCCCcEEEEEECCCCCEE--E-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCc
Confidence            7754 4455  4888898764322  2 22222233344444  455665554 3455555  555443211 1223345


Q ss_pred             eEEEEeCCCCEEEEEecC---CeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCe---EEEEECcCcc
Q 023772          188 NCISMSNDGNCILASCLD---STLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGY---IYFWDLVDAS  261 (277)
Q Consensus       188 ~~~~~s~~~~~l~~~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~---i~iwd~~~~~  261 (277)
                      ....|+|+|++|+..+.+   ..|++||+.+++.. .+....   ......++|||++++.++.++.   ++++++ +|+
T Consensus       334 ~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~---~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~  408 (429)
T PRK03629        334 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTF---LDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGR  408 (429)
T ss_pred             cCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCC---CCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCC
Confidence            678899999998876543   35888999887643 333211   1234568999999998877764   677777 577


Q ss_pred             ceeeeccCcceeE
Q 023772          262 VVAKFKAHSLVVK  274 (277)
Q Consensus       262 ~~~~~~~h~~~v~  274 (277)
                      ....+.+|.+.++
T Consensus       409 ~~~~l~~~~~~~~  421 (429)
T PRK03629        409 FKARLPATDGQVK  421 (429)
T ss_pred             CeEECccCCCCcC
Confidence            7788888776543

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.59  E-value=4.6e-15  Score=119.87  Aligned_cols=199  Identities=13%  Similarity=0.202  Sum_probs=159.0

Q ss_pred             CCccccccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCc
Q 023772            4 SDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQ   83 (277)
Q Consensus         4 ~~~~~~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~   83 (277)
                      ++-..+|..+++.|. .|..+.|-|---+|++++..|-++--|+.+|+.+..+....+.+..++-+|-+..+-+|...|+
T Consensus       196 YD~~GtElHClk~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGt  274 (545)
T KOG1272|consen  196 YDNNGTELHCLKRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGT  274 (545)
T ss_pred             ecCCCcEEeehhhcC-chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCce
Confidence            344456677777664 5889999999889999999999999999999999999888899999999999999999999999


Q ss_pred             EEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEee
Q 023772           84 IFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGS  163 (277)
Q Consensus        84 v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  163 (277)
                      |.+|.....+++..+..|.++|.++++.++|.+++|++.|..++|||++...  ....... +.+...++++...++..+
T Consensus       275 VSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~--ql~t~~t-p~~a~~ls~SqkglLA~~  351 (545)
T KOG1272|consen  275 VSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY--QLHTYRT-PHPASNLSLSQKGLLALS  351 (545)
T ss_pred             EEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc--ccceeec-CCCccccccccccceeee
Confidence            9999999999988899999999999999999999999999999999999754  2222222 345566777788888888


Q ss_pred             cCCcEEEEEc-cCCc----c--cccCCCCCeeEEEEeCCCCEEEEEecCC
Q 023772          164 VDGTVRTFDI-RVGR----E--LSDDLGQPVNCISMSNDGNCILASCLDS  206 (277)
Q Consensus       164 ~d~~i~i~d~-~~~~----~--~~~~~~~~v~~~~~s~~~~~l~~~~~d~  206 (277)
                      ....+.+|.- -.+.    .  +....+.+|..+.|.|-...|-.|...|
T Consensus       352 ~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G  401 (545)
T KOG1272|consen  352 YGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG  401 (545)
T ss_pred             cCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence            8888999952 2211    1  1123456899999998655555555444

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.59  E-value=1.4e-11  Score=102.63  Aligned_cols=251  Identities=13%  Similarity=0.106  Sum_probs=150.7

Q ss_pred             eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEe-CCCcEEEEECCCC
Q 023772           14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCG-GDRQIFYWDVSTG   92 (277)
Q Consensus        14 l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s-~d~~v~~wd~~~~   92 (277)
                      +....++-..+.|++||++++.++.|+.|.++|+.+++.+++++.. ....++++++++++++++. .++.+.++|.++.
T Consensus        32 i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl  110 (369)
T PF02239_consen   32 IPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETL  110 (369)
T ss_dssp             EE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEEEEETTT-
T ss_pred             EcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcCCCCEEEEEecCCCceeEeccccc
Confidence            3333334445789999999999999999999999999999999864 4678899999999998765 6899999999999


Q ss_pred             ceeEEeecc-------cCceeEEEEecCCCEEEEEeCC-CcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEe
Q 023772           93 RVIRKFRGH-------ESEVNAVKFNEYSSVVVSAGYD-QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGG  162 (277)
Q Consensus        93 ~~~~~~~~h-------~~~v~~i~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g  162 (277)
                      ++++.+...       ..++.++..++....++..-.| +.|.+-|............. .........+++  .+++++
T Consensus       111 e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~-~g~~~~D~~~dpdgry~~va  189 (369)
T PF02239_consen  111 EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK-VGRFPHDGGFDPDGRYFLVA  189 (369)
T ss_dssp             -EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---TTEEEEEE-TTSSEEEEE
T ss_pred             cceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec-ccccccccccCcccceeeec
Confidence            988877543       3467788888887766655555 66766675543222222211 122223333333  344433


Q ss_pred             -ecCCcEEEEEccCCcccc--------------------------cC-----------------C-------------CC
Q 023772          163 -SVDGTVRTFDIRVGRELS--------------------------DD-----------------L-------------GQ  185 (277)
Q Consensus       163 -~~d~~i~i~d~~~~~~~~--------------------------~~-----------------~-------------~~  185 (277)
                       ..++.+-++|..+++...                          ..                 .             ..
T Consensus       190 ~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G  269 (369)
T PF02239_consen  190 ANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQG  269 (369)
T ss_dssp             EGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SS
T ss_pred             ccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCC
Confidence             334455555554332110                          00                 0             00


Q ss_pred             CeeEEEEeCCCCEEEEE----ecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEe--ecCCCeEEEEECcC
Q 023772          186 PVNCISMSNDGNCILAS----CLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTG--GSEDGYIYFWDLVD  259 (277)
Q Consensus       186 ~v~~~~~s~~~~~l~~~----~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s--gs~d~~i~iwd~~~  259 (277)
                      .-.-+..+|+++++.+.    ...++|.++|.++.+.+..+..... ......-|+++|+.+..  ...++.|.+||..+
T Consensus       270 ~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~-~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~T  348 (369)
T PF02239_consen  270 GGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPG-KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKT  348 (369)
T ss_dssp             SS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT---EEEEEE-TTSSEEEEEEE--TTEEEEEETTT
T ss_pred             CcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCC-CcEeccEECCCCCEEEEEEecCCCEEEEEECCC
Confidence            01234569999999887    4558999999999887777653221 11455678999986554  34455799999999


Q ss_pred             ccceeeec
Q 023772          260 ASVVAKFK  267 (277)
Q Consensus       260 ~~~~~~~~  267 (277)
                      .+++++++
T Consensus       349 l~~~~~i~  356 (369)
T PF02239_consen  349 LKEKKRIP  356 (369)
T ss_dssp             TEEEEEEE
T ss_pred             cEEEEEEE
Confidence            99999988

...

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=9.7e-13  Score=112.36  Aligned_cols=209  Identities=9%  Similarity=0.065  Sum_probs=132.2

Q ss_pred             ceeeccCCcEEEEEEeCCCCEEEEEeCC---CcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEE-EEeCCCcEEEE
Q 023772           12 NVLKGHEGAVLAARFNGDGNYCLSCGKD---RTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLI-SCGGDRQIFYW   87 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~d---~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-t~s~d~~v~~w   87 (277)
                      ..+..+.+.+.+.+|+|||+.|+..+.+   ..|.+||+.+++... +....+.+.+..|+|+++.|+ +.+.++...+|
T Consensus       189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy  267 (427)
T PRK02889        189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIY  267 (427)
T ss_pred             eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEE
Confidence            4456788899999999999999876643   459999998886543 333345667899999999886 56778776666


Q ss_pred             E--CCCCceeEEeecccCceeEEEEecCCCEEEEEeC-CCcEEEEeCccCCCcceEe-eccccCcEEEEEecCCeEEEee
Q 023772           88 D--VSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGY-DQSLRAWDCRSHSTEPIQI-IDSFQDSVMSVCLTKTEIIGGS  163 (277)
Q Consensus        88 d--~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~  163 (277)
                      .  +.++. .+.+..+........|+|+++.++..+. ++...+|.+.......... ..........+.++++.++..+
T Consensus       268 ~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s  346 (427)
T PRK02889        268 TVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYIS  346 (427)
T ss_pred             EEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEE
Confidence            5  44444 4455555555667889999998776554 5677777654222111111 1211111233445566666555


Q ss_pred             cCC---cEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecCC---eEEEEECCCCceEEEEe
Q 023772          164 VDG---TVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDS---TLRLLDRSTGELLQEYK  223 (277)
Q Consensus       164 ~d~---~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~---~i~~wd~~~~~~~~~~~  223 (277)
                      .++   .|.+||+..++..............|+|+|++|+.++.++   .+++.+. .+...+.+.
T Consensus       347 ~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~  411 (427)
T PRK02889        347 RVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLS  411 (427)
T ss_pred             ccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEee
Confidence            443   5899999876533222222345679999999988877554   3555566 344444443

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.58  E-value=9.8e-13  Score=115.86  Aligned_cols=119  Identities=27%  Similarity=0.449  Sum_probs=105.8

Q ss_pred             ceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEE-EEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772           12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIK-TYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~   90 (277)
                      ..+.||++.+..+.++.||++++|+|.|+++|+|++.+.+... +.-+|+..|+.+.|.|+  +|+|++.|.+.++|+.+
T Consensus       169 ~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~  246 (967)
T KOG0974|consen  169 IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN  246 (967)
T ss_pred             ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc
Confidence            3589999999999999999999999999999999999987665 66689999999999988  99999999999999764


Q ss_pred             CCceeEEeeccc-CceeEEEEecCCCEEEEEeCCCcEEEEeCcc
Q 023772           91 TGRVIRKFRGHE-SEVNAVKFNEYSSVVVSAGYDQSLRAWDCRS  133 (277)
Q Consensus        91 ~~~~~~~~~~h~-~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~  133 (277)
                       +.....+..|. ..++.++..+.....+|++.|+.+++|++..
T Consensus       247 -~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  247 -GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             -cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence             44455788884 5789999999999999999999999999753

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=3.6e-12  Score=108.86  Aligned_cols=225  Identities=11%  Similarity=0.104  Sum_probs=139.3

Q ss_pred             CcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeEEeecccCceeEEEEecCCCE
Q 023772           40 RTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGD---RQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSV  116 (277)
Q Consensus        40 ~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d---~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~  116 (277)
                      ..|.++|.. +...+.+..+...+.+..|+|+++.|+..+.+   ..|.+||+.+++... +......+....|+|+++.
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~  253 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT  253 (427)
T ss_pred             cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence            456777763 44444555677889999999999999877643   359999999887543 3333445567899999987


Q ss_pred             EE-EEeCCCcEEEEeCccCCCcceEeeccccCcEE--EEEecCCeEEEee-cCCcEEEEEcc--CCcccc-cCCCCCeeE
Q 023772          117 VV-SAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVM--SVCLTKTEIIGGS-VDGTVRTFDIR--VGRELS-DDLGQPVNC  189 (277)
Q Consensus       117 l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~-~d~~i~i~d~~--~~~~~~-~~~~~~v~~  189 (277)
                      ++ +.+.++...+|.+...... ...+..+.....  .+..++..++..+ .++...+|.+.  .+.... ...+.....
T Consensus       254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~  332 (427)
T PRK02889        254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTS  332 (427)
T ss_pred             EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCc
Confidence            76 5677888777765432222 222222222222  3344455565444 34666777653  332111 112223345


Q ss_pred             EEEeCCCCEEEEEecCC---eEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCC---eEEEEECcCccce
Q 023772          190 ISMSNDGNCILASCLDS---TLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDG---YIYFWDLVDASVV  263 (277)
Q Consensus       190 ~~~s~~~~~l~~~~~d~---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~---~i~iwd~~~~~~~  263 (277)
                      ..|+|+|++|+..+.++   .|++||+.+++... +....   ......++|+++.|+..+.++   .+++.+. ++...
T Consensus       333 ~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~~---~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~  407 (427)
T PRK02889        333 PRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDTT---RDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIK  407 (427)
T ss_pred             eEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCCC---CccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCce
Confidence            78999999998777654   69999998876543 33221   123457899999888765433   3666677 46667


Q ss_pred             eeeccCcce
Q 023772          264 AKFKAHSLV  272 (277)
Q Consensus       264 ~~~~~h~~~  272 (277)
                      ..+..+.+.
T Consensus       408 ~~l~~~~g~  416 (427)
T PRK02889        408 QRLSVQGGD  416 (427)
T ss_pred             EEeecCCCC
Confidence            777655443

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.56  E-value=1.8e-12  Score=98.38  Aligned_cols=153  Identities=12%  Similarity=0.192  Sum_probs=103.3

Q ss_pred             EEEEEcCCCCEEEEEeC---C-------CcEEEEECCC-CceeEEeec-ccCceeEEEEecCCCEEEEE--eCCCcEEEE
Q 023772           64 RDVHVTADNSKLISCGG---D-------RQIFYWDVST-GRVIRKFRG-HESEVNAVKFNEYSSVVVSA--GYDQSLRAW  129 (277)
Q Consensus        64 ~~~~~~~~~~~l~t~s~---d-------~~v~~wd~~~-~~~~~~~~~-h~~~v~~i~~~~~~~~l~s~--~~d~~i~iw  129 (277)
                      -.+.|+++|++|+.-..   |       +...+|-++. +..+..+.- ...+|.+++|+|+++.++..  ..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            35678888877654322   1       2345555532 233444432 34579999999999986544  467899999


Q ss_pred             eCccCCCcceEeeccccCcEEEEEec--CCeEEEeec---CCcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEec
Q 023772          130 DCRSHSTEPIQIIDSFQDSVMSVCLT--KTEIIGGSV---DGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCL  204 (277)
Q Consensus       130 d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~---d~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  204 (277)
                      |++   .+.+..+..  .....+.++  ++.++.++.   .|.+.+||.+..+.+.......+..++|+|+|++|+++..
T Consensus        89 d~~---~~~i~~~~~--~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen   89 DVK---GKKIFSFGT--QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATATT  163 (194)
T ss_pred             cCc---ccEeEeecC--CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEEEe
Confidence            986   334444443  333445555  456777664   4679999999877776655556889999999999999864


Q ss_pred             ------CCeEEEEECCCCceEEEE
Q 023772          205 ------DSTLRLLDRSTGELLQEY  222 (277)
Q Consensus       205 ------d~~i~~wd~~~~~~~~~~  222 (277)
                            |..++||+.. |+++...
T Consensus       164 ~~r~~~dng~~Iw~~~-G~~l~~~  186 (194)
T PF08662_consen  164 SPRLRVDNGFKIWSFQ-GRLLYKK  186 (194)
T ss_pred             ccceeccccEEEEEec-CeEeEec
Confidence                  7889999985 6666544

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=5.7e-12  Score=107.96  Aligned_cols=222  Identities=14%  Similarity=0.071  Sum_probs=140.7

Q ss_pred             CcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeEEeecccCceeEEEEecCCCE
Q 023772           40 RTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGD---RQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSV  116 (277)
Q Consensus        40 ~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d---~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~  116 (277)
                      ..|.+||... ...+.+..+...+.+..|+|+++.|+..+.+   ..|.+||+.+++... +...........|+|+++.
T Consensus       184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~  261 (433)
T PRK04922        184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR  261 (433)
T ss_pred             EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence            4688999754 3445565677789999999999999887743   469999998876532 3333444557899999987


Q ss_pred             EE-EEeCCC--cEEEEeCccCCCcceEeeccccCcEEEEEe--cCCeEEEee-cCCc--EEEEEccCCcccc-cCCCCCe
Q 023772          117 VV-SAGYDQ--SLRAWDCRSHSTEPIQIIDSFQDSVMSVCL--TKTEIIGGS-VDGT--VRTFDIRVGRELS-DDLGQPV  187 (277)
Q Consensus       117 l~-s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~-~d~~--i~i~d~~~~~~~~-~~~~~~v  187 (277)
                      ++ +.+.+|  .|.+||+.+....   .+..+........+  ++..++..+ .++.  |.++|+..++... ...+...
T Consensus       262 l~~~~s~~g~~~Iy~~d~~~g~~~---~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~  338 (433)
T PRK04922        262 LALTLSRDGNPEIYVMDLGSRQLT---RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYN  338 (433)
T ss_pred             EEEEEeCCCCceEEEEECCCCCeE---ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCc
Confidence            64 555555  5888998765322   22222222223344  445566554 3444  5556665543221 1222334


Q ss_pred             eEEEEeCCCCEEEEEecCC---eEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecC---CCeEEEEECcCcc
Q 023772          188 NCISMSNDGNCILASCLDS---TLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSE---DGYIYFWDLVDAS  261 (277)
Q Consensus       188 ~~~~~s~~~~~l~~~~~d~---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~---d~~i~iwd~~~~~  261 (277)
                      ...+|+|+|++|+..+.++   .|++||+.+++.. .+....   ......++|+|++++..+.   .+.|++++.. +.
T Consensus       339 ~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~---~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~  413 (433)
T PRK04922        339 ARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGS---LDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GR  413 (433)
T ss_pred             cCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECC-CC
Confidence            4689999999988765443   6999999887654 333211   1234578999998776554   3468888885 55


Q ss_pred             ceeeeccCcc
Q 023772          262 VVAKFKAHSL  271 (277)
Q Consensus       262 ~~~~~~~h~~  271 (277)
                      ....+..+.+
T Consensus       414 ~~~~l~~~~g  423 (433)
T PRK04922        414 VRQRLVSADG  423 (433)
T ss_pred             ceEEcccCCC
Confidence            6666665543

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.54  E-value=5.3e-13  Score=109.97  Aligned_cols=236  Identities=19%  Similarity=0.207  Sum_probs=147.0

Q ss_pred             EEEEEEeCCCCEEEEEeCCCcEEEEcCCCCee------EEEEeccCccEEEE---EEcCCCCEEEEEeCCCcEEEEECCC
Q 023772           21 VLAARFNGDGNYCLSCGKDRTIRLWNPHRGIH------IKTYKSHGREVRDV---HVTADNSKLISCGGDRQIFYWDVST   91 (277)
Q Consensus        21 V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~------~~~~~~h~~~v~~~---~~~~~~~~l~t~s~d~~v~~wd~~~   91 (277)
                      +....++-.|++|+- -....+.+|+...+..      .+.+++.+..+.+.   .-.+++--++.|-.-|.+.+.|...
T Consensus       126 ~~~~~~~~~gd~lcF-nvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~  204 (636)
T KOG2394|consen  126 VTNTNQSGKGDRLCF-NVGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPIN  204 (636)
T ss_pred             eeeccccCCCCEEEE-ecCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchh
Confidence            444555556666553 2234677776552211      12233322222222   1124455577777788888888765


Q ss_pred             CceeEEee----cccCceeEEEEecCC-CEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeec--
Q 023772           92 GRVIRKFR----GHESEVNAVKFNEYS-SVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSV--  164 (277)
Q Consensus        92 ~~~~~~~~----~h~~~v~~i~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--  164 (277)
                      .+..+-|.    -.+..|+++.|-|.+ ..++.+-.+|.+.+||.....        ....+.......+..+.....  
T Consensus       205 ~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~--------~~t~p~~~~~k~~~~f~i~t~ks  276 (636)
T KOG2394|consen  205 FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC--------GATAPSYQALKDGDQFAILTSKS  276 (636)
T ss_pred             hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc--------cCCCCcccccCCCCeeEEeeeec
Confidence            33222111    134789999998754 466667789999999863211        111111111222222221111  


Q ss_pred             ---CCcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCc
Q 023772          165 ---DGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDA  241 (277)
Q Consensus       165 ---d~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (277)
                         +.-+.-|-+         ....|+..+|+|||++|++.+.||.+||||+.+.+++..++.-  ..-.+.+|+||||+
T Consensus       277 k~~rNPv~~w~~---------~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSY--FGGLLCvcWSPDGK  345 (636)
T KOG2394|consen  277 KKTRNPVARWHI---------GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSY--FGGLLCVCWSPDGK  345 (636)
T ss_pred             cccCCccceeEe---------ccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhh--ccceEEEEEcCCcc
Confidence               111222222         2347899999999999999999999999999987776543321  11236678999999


Q ss_pred             eEEeecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772          242 HVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL  276 (277)
Q Consensus       242 ~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  276 (277)
                      ||++|++|--|-+|.+.+.+++..-++|...|+.+
T Consensus       346 yIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~V  380 (636)
T KOG2394|consen  346 YIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVV  380 (636)
T ss_pred             EEEecCCcceEEEEEeccceEEEeccccccceeeE
Confidence            99999999999999999999999999999888754

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.51  E-value=3.6e-14  Score=117.53  Aligned_cols=215  Identities=16%  Similarity=0.288  Sum_probs=157.0

Q ss_pred             EEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC-------CceeEEeecccCceeEEEEecCCCEEEEEeCCCc
Q 023772           53 IKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVST-------GRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQS  125 (277)
Q Consensus        53 ~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~-------~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~  125 (277)
                      +..|.+|...|+.++-..+.+-+++++.|++||+|.++.       ..+..++..|+.+|.++.|..+.+.+++  -||-
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~g  805 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGG  805 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCc
Confidence            456778999999998888888999999999999999853       3467889999999999999999888876  5889


Q ss_pred             EEEEeCccCCCcceEe---eccccCcEEEEEe-cCCeE-EEeecCCcEEEEEccCCcc---ccc----CCCCCeeEEEEe
Q 023772          126 LRAWDCRSHSTEPIQI---IDSFQDSVMSVCL-TKTEI-IGGSVDGTVRTFDIRVGRE---LSD----DLGQPVNCISMS  193 (277)
Q Consensus       126 i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~-~~g~~d~~i~i~d~~~~~~---~~~----~~~~~v~~~~~s  193 (277)
                      |.+||.-.+.......   .++....+..+.- +...+ +.++...+++++|-|.++-   +..    ....-++++++.
T Consensus       806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa  885 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA  885 (1034)
T ss_pred             ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence            9999975432211000   1112223333322 12223 3347889999999987642   211    123568999999


Q ss_pred             CCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEE-EECcCccceeeeccCcce
Q 023772          194 NDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYF-WDLVDASVVAKFKAHSLV  272 (277)
Q Consensus       194 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~i-wd~~~~~~~~~~~~h~~~  272 (277)
                      +.|++++++-..|+|.+.|.++|+.+..++..++.-...   ..|.+..++....|..+.+ |...+|....+.+..+.+
T Consensus       886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllql---aapsdq~L~~saldHslaVnWhaldgimh~q~kpppep  962 (1034)
T KOG4190|consen  886 DKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQL---AAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEP  962 (1034)
T ss_pred             cCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhh---cCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcc
Confidence            999999999999999999999999998887765443222   2455667787778999998 998888887777755444

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=4.3e-11  Score=102.69  Aligned_cols=218  Identities=11%  Similarity=0.056  Sum_probs=138.4

Q ss_pred             CcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceeEEeecccCceeEEEEecCCCE
Q 023772           40 RTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGG---DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSV  116 (277)
Q Consensus        40 ~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~---d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~  116 (277)
                      ..|.+||... ...+.+..|...+.+..|+|++++|+..+.   +..|.+||+.+++.. .+..+...+....|+|+++.
T Consensus       182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~  259 (435)
T PRK05137        182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK  259 (435)
T ss_pred             eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence            4788888744 445566677889999999999999887764   468999999888653 34456667778899999987


Q ss_pred             EE-EEeCCCc--EEEEeCccCCCcceEeeccccCcE--EEEEecCCeEEEeec-CC--cEEEEEccCCccccc-CCCCCe
Q 023772          117 VV-SAGYDQS--LRAWDCRSHSTEPIQIIDSFQDSV--MSVCLTKTEIIGGSV-DG--TVRTFDIRVGRELSD-DLGQPV  187 (277)
Q Consensus       117 l~-s~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~-d~--~i~i~d~~~~~~~~~-~~~~~v  187 (277)
                      ++ +.+.++.  |.+||+.....   ..+..+....  ..+.+++..++..+. ++  .|.++|+..+..... .....+
T Consensus       260 la~~~~~~g~~~Iy~~d~~~~~~---~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~  336 (435)
T PRK05137        260 VVMSLSQGGNTDIYTMDLRSGTT---TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRY  336 (435)
T ss_pred             EEEEEecCCCceEEEEECCCCce---EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcc
Confidence            64 5566665  66667765432   2222222222  233444555665543 33  577778765432211 123345


Q ss_pred             eEEEEeCCCCEEEEEecC---CeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCC------CeEEEEECc
Q 023772          188 NCISMSNDGNCILASCLD---STLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSED------GYIYFWDLV  258 (277)
Q Consensus       188 ~~~~~s~~~~~l~~~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d------~~i~iwd~~  258 (277)
                      ....|+|+|++|+..+.+   ..|.+||+..+.. +.+....   ......++|||++|+..+.+      ..++++|+.
T Consensus       337 ~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~~---~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~  412 (435)
T PRK05137        337 STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSGF---LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT  412 (435)
T ss_pred             cCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCCC---CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence            668899999999876643   3688899865443 3333211   12345689999987754332      368888987


Q ss_pred             Cccceeeec
Q 023772          259 DASVVAKFK  267 (277)
Q Consensus       259 ~~~~~~~~~  267 (277)
                      .+.. ..+.
T Consensus       413 g~~~-~~l~  420 (435)
T PRK05137        413 GRNE-REVP  420 (435)
T ss_pred             CCce-EEcc
Confidence            6544 3443

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=4.4e-11  Score=94.46  Aligned_cols=243  Identities=16%  Similarity=0.252  Sum_probs=149.8

Q ss_pred             cccceeec-cCCcEEEEEEeCCC-CEEEEEeCCCcEEEEcCCC----Cee----------EEEEeccCccEEEEEEcCCC
Q 023772            9 TEANVLKG-HEGAVLAARFNGDG-NYCLSCGKDRTIRLWNPHR----GIH----------IKTYKSHGREVRDVHVTADN   72 (277)
Q Consensus         9 ~~~~~l~~-H~~~V~~~~~~~~~-~~l~s~s~d~~v~iwd~~~----~~~----------~~~~~~h~~~v~~~~~~~~~   72 (277)
                      +.+-.|+. -...|+|++|-|.+ +.|+.|+. +-|.+|....    ++.          +....+| .+|+++.|.+++
T Consensus       130 t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dg  207 (445)
T KOG2139|consen  130 TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDG  207 (445)
T ss_pred             CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCC
Confidence            33334443 45679999999965 56666665 6789996421    111          1223445 689999999999


Q ss_pred             CEEEEEeC-CCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccC-CCcceEeeccccCcEE
Q 023772           73 SKLISCGG-DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSH-STEPIQIIDSFQDSVM  150 (277)
Q Consensus        73 ~~l~t~s~-d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~  150 (277)
                      ..+++++. |..|.+||+.++..+.-.......+.-+.|+||+.+++.+.-|+..++|+.... ..++.. .  .++.+.
T Consensus       208 t~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~-l--gsgrvq  284 (445)
T KOG2139|consen  208 TILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWI-L--GSGRVQ  284 (445)
T ss_pred             CEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceeccee-c--cCCcee
Confidence            99999986 578999999998766544344667888999999999999999999999965432 222211 1  122555


Q ss_pred             EEEecCCe---EEEeecCCcEEEEEccCCc---------------------cc-----ccCCCCCeeEEEEeCCCCEEEE
Q 023772          151 SVCLTKTE---IIGGSVDGTVRTFDIRVGR---------------------EL-----SDDLGQPVNCISMSNDGNCILA  201 (277)
Q Consensus       151 ~~~~~~~~---~~~g~~d~~i~i~d~~~~~---------------------~~-----~~~~~~~v~~~~~s~~~~~l~~  201 (277)
                      .-.+++..   +++.+  |.-++|.+.-..                     ++     ......++.+++|+|.|.+|++
T Consensus       285 tacWspcGsfLLf~~s--gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav  362 (445)
T KOG2139|consen  285 TACWSPCGSFLLFACS--GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAV  362 (445)
T ss_pred             eeeecCCCCEEEEEEc--CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEE
Confidence            55555433   22222  222222221000                     00     0112457899999999999998


Q ss_pred             EecCCe--------EEEEECCCCceEE-EEeccccceeeeeeEec---CCCceEEeecCCCeEEEEECc
Q 023772          202 SCLDST--------LRLLDRSTGELLQ-EYKGHICKSFKTDCCLT---NSDAHVTGGSEDGYIYFWDLV  258 (277)
Q Consensus       202 ~~~d~~--------i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~l~sgs~d~~i~iwd~~  258 (277)
                      .-..+.        |.+||.+..-.+. .+.+..........+|+   .++.+|..+=+.|.+.-|++.
T Consensus       363 ~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  363 IFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             EEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence            765443        5678876433222 22233222222233444   356677777677778777653

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.49  E-value=2.2e-12  Score=113.70  Aligned_cols=194  Identities=16%  Similarity=0.172  Sum_probs=148.5

Q ss_pred             cEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCcc----EEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 023772           20 AVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGRE----VRDVHVTADNSKLISCGGDRQIFYWDVSTGRVI   95 (277)
Q Consensus        20 ~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~----v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~   95 (277)
                      -|....+..+...++.+..+..+-+||...+............    ..-+-++++.-++++|+.-+.|.+|+....+.-
T Consensus        89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p  168 (967)
T KOG0974|consen   89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKP  168 (967)
T ss_pred             cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCc
Confidence            3444555566778888888999999998876655554432211    112234566678999999999999998743333


Q ss_pred             EEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCCcEEEEEccC
Q 023772           96 RKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRV  175 (277)
Q Consensus        96 ~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~  175 (277)
                      ..+.+|.+.+.++.++.++.+++++|.|+++++|++.+..... ...-+|...+..+.+.++.+++++.|.+.++|+..-
T Consensus       169 ~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW~~~~  247 (967)
T KOG0974|consen  169 IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-CTGFGHSARVWACCFLPNRIITVGEDCTCRVWGVNG  247 (967)
T ss_pred             ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-cccccccceeEEEEeccceeEEeccceEEEEEeccc
Confidence            3578999999999999999999999999999999998765433 234467888999999999999999999999996542


Q ss_pred             Cc--ccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECC
Q 023772          176 GR--ELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRS  214 (277)
Q Consensus       176 ~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~  214 (277)
                      .+  .+.......+..++.+++...++|++.|+.+++||+.
T Consensus       248 ~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~  288 (967)
T KOG0974|consen  248 TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN  288 (967)
T ss_pred             ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence            21  2222334578899999999999999999999999974

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.46  E-value=2.4e-11  Score=95.93  Aligned_cols=183  Identities=16%  Similarity=0.207  Sum_probs=130.4

Q ss_pred             CCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEe-ccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC----C
Q 023772           18 EGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYK-SHGREVRDVHVTADNSKLISCGGDRQIFYWDVST----G   92 (277)
Q Consensus        18 ~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~----~   92 (277)
                      +-.+..++|++--.-++.+..|-+||+||-... +...++ .-+..|++++|-|.+..-++.+..+-|.+|....    +
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst-~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~  176 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSST-CPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNAN  176 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCCC-CCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccc
Confidence            345677899987667789999999999996653 222332 2356899999999887777777788899998742    1


Q ss_pred             ce----------eEEeecccCceeEEEEecCCCEEEEEeC-CCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEE
Q 023772           93 RV----------IRKFRGHESEVNAVKFNEYSSVVVSAGY-DQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIG  161 (277)
Q Consensus        93 ~~----------~~~~~~h~~~v~~i~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (277)
                      ..          +....+| .+|++|.|++|+..+++++. |..|.+||..++...++.-...........+++++.+..
T Consensus       177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa  255 (445)
T KOG2139|consen  177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA  255 (445)
T ss_pred             cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence            11          1122344 79999999999999999885 678999999887766554222222223445555667999


Q ss_pred             eecCCcEEEEEccCC---cccccCCCCCeeEEEEeCCCCEEEEEe
Q 023772          162 GSVDGTVRTFDIRVG---RELSDDLGQPVNCISMSNDGNCILASC  203 (277)
Q Consensus       162 g~~d~~i~i~d~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~  203 (277)
                      ++.|+..++|+....   +.... ..+.|...+|+|+|++|+-++
T Consensus       256 At~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~  299 (445)
T KOG2139|consen  256 ATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFAC  299 (445)
T ss_pred             ecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEE
Confidence            999999999965432   22222 234899999999999876554

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.46  E-value=2.8e-11  Score=93.90  Aligned_cols=172  Identities=16%  Similarity=0.281  Sum_probs=126.1

Q ss_pred             CcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeEEeecc--cCceeEEEEecCCCE
Q 023772           40 RTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVST-GRVIRKFRGH--ESEVNAVKFNEYSSV  116 (277)
Q Consensus        40 ~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~-~~~~~~~~~h--~~~v~~i~~~~~~~~  116 (277)
                      ..|-|||-...+++.++.- ..+|.++.+.++  +|+.. .+++|++|...+ -+.++.+..-  ...+.++.-.....+
T Consensus        75 NkviIWDD~k~~~i~el~f-~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~  150 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELSF-NSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL  150 (346)
T ss_pred             ceEEEEecccCcEEEEEEe-ccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence            5799999777788887764 579999999865  45554 467899999873 4555555432  333444444433344


Q ss_pred             EEE-EeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec--CCeEEEeecCCc-EEEEEccCCccccc---C-CCCCee
Q 023772          117 VVS-AGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT--KTEIIGGSVDGT-VRTFDIRVGRELSD---D-LGQPVN  188 (277)
Q Consensus       117 l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~d~~-i~i~d~~~~~~~~~---~-~~~~v~  188 (277)
                      |+. |-.-|.|++-|+......+..++..|...+..+.++  +..+++++..|+ |||||.+++..+..   . ....+.
T Consensus       151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy  230 (346)
T KOG2111|consen  151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY  230 (346)
T ss_pred             EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence            433 556799999999765543345667788888777765  566999999998 89999998876543   2 235799


Q ss_pred             EEEEeCCCCEEEEEecCCeEEEEECCC
Q 023772          189 CISMSNDGNCILASCLDSTLRLLDRST  215 (277)
Q Consensus       189 ~~~~s~~~~~l~~~~~d~~i~~wd~~~  215 (277)
                      ||+|||++++|+++|..|++++|.++.
T Consensus       231 ~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  231 CIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             EEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            999999999999999999999998864

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.46  E-value=6.3e-13  Score=122.76  Aligned_cols=198  Identities=14%  Similarity=0.238  Sum_probs=156.5

Q ss_pred             EeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeec-ccCceeEEEEecCCCEEEEEeCCCcEEEEeCccC
Q 023772           56 YKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRG-HESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSH  134 (277)
Q Consensus        56 ~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~-h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~  134 (277)
                      .+.+-..|.++.=+|...+.+||+.||.|++|.-..++.+..++. ..+.|+.+.|+.+|+.+..+..||.+.+|...  
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-- 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-- 2281 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC--
Confidence            344556788888889999999999999999999888877766653 24789999999999999999999999999875  


Q ss_pred             CCcceEeeccccCcEEEEEecCCeEEEee---cCCcEEEEEccCC---cccccCCCCCeeEEEEeCCCCEEEEEecCCeE
Q 023772          135 STEPIQIIDSFQDSVMSVCLTKTEIIGGS---VDGTVRTFDIRVG---RELSDDLGQPVNCISMSNDGNCILASCLDSTL  208 (277)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~d~~i~i~d~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i  208 (277)
                       +.+......|......+.+-+..+++++   .++.+.+||....   ..+...+.+.++++++-|..+.|++|+.+|.+
T Consensus      2282 -pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v 2360 (2439)
T KOG1064|consen 2282 -PKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEV 2360 (2439)
T ss_pred             -CcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcE
Confidence             3444445555555555655555566543   4678999996532   23445677889999999999999999999999


Q ss_pred             EEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeecc
Q 023772          209 RLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKA  268 (277)
Q Consensus       209 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~  268 (277)
                      ++||++..++++.|..           +. ...++.+|+..|.|+||++..-.+++.++.
T Consensus      2361 ~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2361 CLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred             EEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence            9999999888877753           11 355789999999999999999888888873

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.46  E-value=6e-11  Score=101.44  Aligned_cols=208  Identities=14%  Similarity=0.107  Sum_probs=130.3

Q ss_pred             cccceeeccCCcEEEEEEeCCCCEEEEEeCC---CcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEE-EEeCCC--
Q 023772            9 TEANVLKGHEGAVLAARFNGDGNYCLSCGKD---RTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLI-SCGGDR--   82 (277)
Q Consensus         9 ~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d---~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-t~s~d~--   82 (277)
                      .....+..+...+....|+|||++|+.++.+   ..|.+||+.+++... +..+.+.+.+..|+|+++.|+ +.+.++  
T Consensus       180 ~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~  258 (417)
T TIGR02800       180 ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNP  258 (417)
T ss_pred             CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCc
Confidence            3345566677789999999999999976544   479999998875433 334556677899999998776 444444  


Q ss_pred             cEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeC-CC--cEEEEeCccCCCcceEeeccccCcEEE--EEecCC
Q 023772           83 QIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGY-DQ--SLRAWDCRSHSTEPIQIIDSFQDSVMS--VCLTKT  157 (277)
Q Consensus        83 ~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~  157 (277)
                      .|.+||+.+++.. .+..+........|+|+++.|+.++. ++  .|.++|+.....   ..+.........  +..++.
T Consensus       259 ~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~---~~l~~~~~~~~~~~~spdg~  334 (417)
T TIGR02800       259 DIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV---RRLTFRGGYNASPSWSPDGD  334 (417)
T ss_pred             cEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE---EEeecCCCCccCeEECCCCC
Confidence            5889999877543 34444444556789999998776654 33  466777654322   122212222233  334455


Q ss_pred             eEEEeecCC---cEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecCC---eEEEEECCCCceEEEE
Q 023772          158 EIIGGSVDG---TVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDS---TLRLLDRSTGELLQEY  222 (277)
Q Consensus       158 ~~~~g~~d~---~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~---~i~~wd~~~~~~~~~~  222 (277)
                      .++.+..++   .|.+||+..+...............|+|+|++|+..+.++   .+++.+.. ++....+
T Consensus       335 ~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~  404 (417)
T TIGR02800       335 LIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARL  404 (417)
T ss_pred             EEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeEC
Confidence            676666654   6888888765432212122334568999999888877654   34455543 3333333

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.45  E-value=6e-13  Score=103.64  Aligned_cols=227  Identities=11%  Similarity=0.142  Sum_probs=142.5

Q ss_pred             EEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeEEeecc
Q 023772           23 AARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISC-GGDRQIFYWDVSTGRVIRKFRGH  101 (277)
Q Consensus        23 ~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~-s~d~~v~~wd~~~~~~~~~~~~h  101 (277)
                      -+.|+|+|+|+++++.- .+.|-|.++-+....|.. -..|..+.|..+..+++.+ ..|+.|.+|++..-+=-..+...
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg   90 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG   90 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence            47899999999998864 888888776543332222 2467788999888887765 56789999999887766777778


Q ss_pred             cCceeEEEEecCCC-EEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEeecCCcEEEEEccCCcc
Q 023772          102 ESEVNAVKFNEYSS-VVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVGRE  178 (277)
Q Consensus       102 ~~~v~~i~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~d~~i~i~d~~~~~~  178 (277)
                      ..++.++.|+|+++ .+.+...|-.|.+|.+.+.....+   ......+..+.+.+  ...+..+.-.+...+.+...+.
T Consensus        91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~---~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~  167 (447)
T KOG4497|consen   91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL---PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKA  167 (447)
T ss_pred             CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe---cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHH
Confidence            88999999999995 566777899999999976543222   11122233444443  3333332211111112211111


Q ss_pred             c--ccCC---CCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEE
Q 023772          179 L--SDDL---GQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIY  253 (277)
Q Consensus       179 ~--~~~~---~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~  253 (277)
                      .  ....   -...+.+.|+|||+.|+.         ||.--.-.+..|.-..  . .....++|.+.+++.|+.|+.+|
T Consensus       168 W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leykv~aYe~~l--G-~k~v~wsP~~qflavGsyD~~lr  235 (447)
T KOG4497|consen  168 WILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYKVYAYERGL--G-LKFVEWSPCNQFLAVGSYDQMLR  235 (447)
T ss_pred             HHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhheeeeeeecc--c-eeEEEeccccceEEeeccchhhh
Confidence            0  0111   124567899999998754         5432222222222111  1 12245789999999999999999


Q ss_pred             EEECcCccceeee
Q 023772          254 FWDLVDASVVAKF  266 (277)
Q Consensus       254 iwd~~~~~~~~~~  266 (277)
                      +-|--+-+.+.+|
T Consensus       236 vlnh~tWk~f~ef  248 (447)
T KOG4497|consen  236 VLNHFTWKPFGEF  248 (447)
T ss_pred             hhceeeeeehhhh
Confidence            9876665554443

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.45  E-value=6.3e-11  Score=98.68  Aligned_cols=236  Identities=14%  Similarity=0.158  Sum_probs=146.7

Q ss_pred             CEE-EEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEE
Q 023772           31 NYC-LSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVK  109 (277)
Q Consensus        31 ~~l-~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~  109 (277)
                      +++ ++-..++.|.+.|..+.+.+.++.........+.++|++++++.++.|+.|.++|+.+++.+.+++.... -.+++
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~   84 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIA   84 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEE
Confidence            344 4567789999999999999999987655555678999999999999999999999999999999886554 46799


Q ss_pred             EecCCCEEEEEe-CCCcEEEEeCccCCCcceEeecc-------ccCcEEEEEe--cCCeEEEeecC-CcEEEEEccCCcc
Q 023772          110 FNEYSSVVVSAG-YDQSLRAWDCRSHSTEPIQIIDS-------FQDSVMSVCL--TKTEIIGGSVD-GTVRTFDIRVGRE  178 (277)
Q Consensus       110 ~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~~~--~~~~~~~g~~d-~~i~i~d~~~~~~  178 (277)
                      +++++++++.+. .++.+.++|.++.+  .+..+..       ....+.++..  ....++..-.| +.|.+.|......
T Consensus        85 ~s~DG~~~~v~n~~~~~v~v~D~~tle--~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~  162 (369)
T PF02239_consen   85 VSPDGKYVYVANYEPGTVSVIDAETLE--PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN  162 (369)
T ss_dssp             E--TTTEEEEEEEETTEEEEEETTT----EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC
T ss_pred             EcCCCCEEEEEecCCCceeEecccccc--ceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc
Confidence            999999988765 68999999987643  3333221       1122333332  23335555554 6777777655432


Q ss_pred             cc---cCCCCCeeEEEEeCCCCEEEEE-ecCCeEEEEECCCCceEEEEec----cccce-------eeeeeEecCCCceE
Q 023772          179 LS---DDLGQPVNCISMSNDGNCILAS-CLDSTLRLLDRSTGELLQEYKG----HICKS-------FKTDCCLTNSDAHV  243 (277)
Q Consensus       179 ~~---~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~~wd~~~~~~~~~~~~----~~~~~-------~~~~~~~~~~~~~l  243 (277)
                      +.   ...+.......|+|+++|++++ ..++.|-++|.++++++..+..    |....       ....+.....+...
T Consensus       163 ~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~  242 (369)
T PF02239_consen  163 LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFA  242 (369)
T ss_dssp             EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSE
T ss_pred             cceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeecccccee
Confidence            21   1234567788999999987665 5567899999999888765432    11110       11111222223333


Q ss_pred             EeecCCCeEEEEECcCccceeeeccC
Q 023772          244 TGGSEDGYIYFWDLVDASVVAKFKAH  269 (277)
Q Consensus       244 ~sgs~d~~i~iwd~~~~~~~~~~~~h  269 (277)
                      ++.-....+.+||..+.+.+++++..
T Consensus       243 ~~~ig~~~v~v~d~~~wkvv~~I~~~  268 (369)
T PF02239_consen  243 IPLIGTDPVSVHDDYAWKVVKTIPTQ  268 (369)
T ss_dssp             EEEEE--TTT-STTTBTSEEEEEE-S
T ss_pred             cccccCCccccchhhcCeEEEEEECC
Confidence            22222335667898888898888854

...

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.44  E-value=7.1e-11  Score=98.58  Aligned_cols=190  Identities=16%  Similarity=0.240  Sum_probs=136.8

Q ss_pred             CCCCEEEEEeCCCcEEEEcCCCCeeEEEEec---cCccEEEEEEc--------------------CCCCEEEEEeCCCcE
Q 023772           28 GDGNYCLSCGKDRTIRLWNPHRGIHIKTYKS---HGREVRDVHVT--------------------ADNSKLISCGGDRQI   84 (277)
Q Consensus        28 ~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~---h~~~v~~~~~~--------------------~~~~~l~t~s~d~~v   84 (277)
                      |-..|+|....||.+||||..+++....|..   -.+.+.+..|.                    .+...++-|-..|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            4567899999999999999998887766643   23445555542                    223457778889999


Q ss_pred             EEEECCCCceeEEee--cccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEe
Q 023772           85 FYWDVSTGRVIRKFR--GHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGG  162 (277)
Q Consensus        85 ~~wd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  162 (277)
                      .++++..++.-..+.  .|.+.|+++.++.+...|.|++.|+.+..|+....                            
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~----------------------------  134 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK----------------------------  134 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc----------------------------
Confidence            999999998877765  68999999999988889999999999999986432                            


Q ss_pred             ecCCcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEec--C-C
Q 023772          163 SVDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLT--N-S  239 (277)
Q Consensus       163 ~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~--~-~  239 (277)
                         ..+++|...         ...+.+++.+|||..+++++  ++|++||.++++.+..|.||...+........  . .
T Consensus       135 ---~~~~~~~~~---------~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~  200 (541)
T KOG4547|consen  135 ---VIIRIWKEQ---------KPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGII  200 (541)
T ss_pred             ---eeeeeeccC---------CCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccc
Confidence               123444432         23467788999999888875  57999999999999999999755433332222  1 1


Q ss_pred             CceE-EeecCCCeEEEEECcC
Q 023772          240 DAHV-TGGSEDGYIYFWDLVD  259 (277)
Q Consensus       240 ~~~l-~sgs~d~~i~iwd~~~  259 (277)
                      |.++ .+...+.-|.+|-++.
T Consensus       201 G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  201 GKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             cceeeeccccccceeEEEEEc
Confidence            4454 4445566677786554

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.43  E-value=2e-12  Score=119.64  Aligned_cols=200  Identities=16%  Similarity=0.279  Sum_probs=152.8

Q ss_pred             eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEec-cCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 023772           13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKS-HGREVRDVHVTADNSKLISCGGDRQIFYWDVST   91 (277)
Q Consensus        13 ~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~   91 (277)
                      .++.|-..|.++.-+|...+-+||+.||.+++|....+..+..++. ....|+.+.|+.+|+.+..+..||.+.+|... 
T Consensus      2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred             EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-
Confidence            3455667788888889888999999999999999887777766653 33679999999999999999999999999986 


Q ss_pred             CceeEEeecccCceeEEEEecCCCEEEEEe---CCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEeecCC
Q 023772           92 GRVIRKFRGHESEVNAVKFNEYSSVVVSAG---YDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDG  166 (277)
Q Consensus        92 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~d~  166 (277)
                      .++....+.|....+...|..  ..+++++   .++.+.+||...... ...+...|...++.+...|  ..+++|+.+|
T Consensus      2282 pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~-~s~v~~~H~~gaT~l~~~P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPM-NSLVHTCHDGGATVLAYAPKHQLLISGGRKG 2358 (2439)
T ss_pred             CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcc-cceeeeecCCCceEEEEcCcceEEEecCCcC
Confidence            566778889988888877765  5666654   578999999754322 2222244555555555544  4599999999


Q ss_pred             cEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEec
Q 023772          167 TVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKG  224 (277)
Q Consensus       167 ~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~  224 (277)
                      .+++||++..+.+.....       ++ ...++++|+..|.|+||++..-.++..+..
T Consensus      2359 ~v~l~D~rqrql~h~~~~-------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2359 EVCLFDIRQRQLRHTFQA-------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred             cEEEeehHHHHHHHHhhh-------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence            999999987654332211       34 556899999999999999988777776654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.42  E-value=3.1e-10  Score=97.06  Aligned_cols=220  Identities=14%  Similarity=0.079  Sum_probs=136.9

Q ss_pred             CcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeEEeecccCceeEEEEecCCCE
Q 023772           40 RTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGD---RQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSV  116 (277)
Q Consensus        40 ~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d---~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~  116 (277)
                      ..|.++|...+ ..+.+..+...+.+..|+|++++|+.++.+   ..|++||+.+++... +..+...+.++.|+|+++.
T Consensus       170 ~~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~  247 (417)
T TIGR02800       170 YELQVADYDGA-NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSK  247 (417)
T ss_pred             ceEEEEcCCCC-CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence            35777786533 344555566778999999999999877644   479999999876533 3335556667899999987


Q ss_pred             EE-EEeCCC--cEEEEeCccCCCcceEeeccccCcE--EEEEecCCeEEEeec-CC--cEEEEEccCCccccc-CCCCCe
Q 023772          117 VV-SAGYDQ--SLRAWDCRSHSTEPIQIIDSFQDSV--MSVCLTKTEIIGGSV-DG--TVRTFDIRVGRELSD-DLGQPV  187 (277)
Q Consensus       117 l~-s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~-d~--~i~i~d~~~~~~~~~-~~~~~v  187 (277)
                      |+ +.+.++  .|.+||+.+.....   +..+....  ..+..++..++..+. ++  .|.++|+..++.... ......
T Consensus       248 l~~~~~~~~~~~i~~~d~~~~~~~~---l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~  324 (417)
T TIGR02800       248 LAVSLSKDGNPDIYVMDLDGKQLTR---LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYN  324 (417)
T ss_pred             EEEEECCCCCccEEEEECCCCCEEE---CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCc
Confidence            65 444444  58888876543221   11122111  223334555654443 33  467777765543221 223456


Q ss_pred             eEEEEeCCCCEEEEEecCC---eEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCC---eEEEEECcCcc
Q 023772          188 NCISMSNDGNCILASCLDS---TLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDG---YIYFWDLVDAS  261 (277)
Q Consensus       188 ~~~~~s~~~~~l~~~~~d~---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~---~i~iwd~~~~~  261 (277)
                      ....|+|+|++|+.++.++   .|.+||+.++.. +.+....   ......++|++++|+..+.++   .+++.+. ++.
T Consensus       325 ~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~---~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~  399 (417)
T TIGR02800       325 ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDTG---LDESPSFAPNGRMILYATTRGGRGVLGLVST-DGR  399 (417)
T ss_pred             cCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCCC---CCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCc
Confidence            6789999999999888776   789999987544 3333221   123346899999887765543   4555554 455


Q ss_pred             ceeeeccC
Q 023772          262 VVAKFKAH  269 (277)
Q Consensus       262 ~~~~~~~h  269 (277)
                      ....+..+
T Consensus       400 ~~~~~~~~  407 (417)
T TIGR02800       400 FRARLPLG  407 (417)
T ss_pred             eeeECCCC
Confidence            56666544

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=1.8e-10  Score=98.89  Aligned_cols=201  Identities=13%  Similarity=0.112  Sum_probs=125.4

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCC---CcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEE-EEeCCC--cE
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKD---RTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLI-SCGGDR--QI   84 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d---~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-t~s~d~--~v   84 (277)
                      ...+..|...+....|+|||+.|+..+.+   ..|.+||+.+++... +....+.+....|+|++++|+ +.+.++  .|
T Consensus       191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~I  269 (430)
T PRK00178        191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEI  269 (430)
T ss_pred             ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceE
Confidence            34456677889999999999999876543   368888998876543 222334556789999999886 444454  58


Q ss_pred             EEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeC-CC--cEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEE
Q 023772           85 FYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGY-DQ--SLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIG  161 (277)
Q Consensus        85 ~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (277)
                      .+||+++++.. .+..+........|+|+++.++..+. ++  .|.++++.......+. ..........+.++++.++.
T Consensus       270 y~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~~~~~~~Spdg~~i~~  347 (430)
T PRK00178        270 YVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNYNARPRLSADGKTLVM  347 (430)
T ss_pred             EEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCCccceEECCCCCEEEE
Confidence            88899887654 34445555667889999987766553 33  4666676554322221 11111122234445556654


Q ss_pred             eec-CC--cEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecC---CeEEEEECC
Q 023772          162 GSV-DG--TVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLD---STLRLLDRS  214 (277)
Q Consensus       162 g~~-d~--~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~~wd~~  214 (277)
                      ... ++  .|.+||+.+++..............|+|+|++++..+.+   ..|++++..
T Consensus       348 ~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~  406 (430)
T PRK00178        348 VHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN  406 (430)
T ss_pred             EEccCCceEEEEEECCCCCEEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            443 33  477889877643221111122345899999998776654   246677774

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.40  E-value=1.6e-11  Score=102.16  Aligned_cols=190  Identities=12%  Similarity=0.183  Sum_probs=141.1

Q ss_pred             EEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEee---
Q 023772           23 AARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFR---   99 (277)
Q Consensus        23 ~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~---   99 (277)
                      .++++.-.--|+.++....|.-.+++.|..+..|+...+.++++.+++.+.+|++|+.||.|..||..+...+.++.   
T Consensus       138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~  217 (703)
T KOG2321|consen  138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAAS  217 (703)
T ss_pred             cccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeeccc
Confidence            34455444445566666788888999999999998888999999999999999999999999999998776555443   


Q ss_pred             ---cccC-----ceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC---eEEEeecCCcE
Q 023772          100 ---GHES-----EVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT---EIIGGSVDGTV  168 (277)
Q Consensus       100 ---~h~~-----~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~d~~i  168 (277)
                         .|..     .|+++.|..++-.++.|..+|.+.+||++...+..+. -+...-++..+.+.+.   ..+.......+
T Consensus       218 ~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~k-dh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~  296 (703)
T KOG2321|consen  218 SVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVK-DHGYELPIKKLDWQDTDQQNKVVSMDKRIL  296 (703)
T ss_pred             ccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeec-ccCCccceeeecccccCCCceEEecchHHh
Confidence               2322     4999999999999999999999999999975432211 1223344555555332   23333445679


Q ss_pred             EEEEccCCcccccCC-CCCeeEEEEeCCCCEEEEEecCCeEEEEEC
Q 023772          169 RTFDIRVGRELSDDL-GQPVNCISMSNDGNCILASCLDSTLRLLDR  213 (277)
Q Consensus       169 ~i~d~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~  213 (277)
                      +|||-.+++.+.... ...++.+|+-|++.+++++-.+..+..|=+
T Consensus       297 kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyi  342 (703)
T KOG2321|consen  297 KIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYI  342 (703)
T ss_pred             hhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEEc
Confidence            999999888765533 346899999999999999988887765543

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.39  E-value=5.1e-10  Score=94.40  Aligned_cols=232  Identities=17%  Similarity=0.169  Sum_probs=143.1

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCcee---
Q 023772           30 GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVN---  106 (277)
Q Consensus        30 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~---  106 (277)
                      +..++.++.|+.+..+|..+|+.+-..... +.+.+.-.. .+..++.+..++.+..||.++|+.+.++........   
T Consensus       105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~  182 (377)
T TIGR03300       105 GGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRG  182 (377)
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecC
Confidence            456667777888888888787766554432 222221111 245677778899999999999998877654322111   


Q ss_pred             --EEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccC---------cEEEEEecCCeEEEeecCCcEEEEEccC
Q 023772          107 --AVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQD---------SVMSVCLTKTEIIGGSVDGTVRTFDIRV  175 (277)
Q Consensus       107 --~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~d~~i~i~d~~~  175 (277)
                        +....  +..++.+..++.+..+|.+++.............         ........+..++.++.+|.+..||..+
T Consensus       183 ~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~t  260 (377)
T TIGR03300       183 SASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRS  260 (377)
T ss_pred             CCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCC
Confidence              11111  2467778888999999987654321111110000         0001112345677888899999999988


Q ss_pred             CcccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEE
Q 023772          176 GRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFW  255 (277)
Q Consensus       176 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iw  255 (277)
                      ++..............+  .+..++.++.||.++.+|..+++.+..+....... .....+  .+..++.++.||.|+++
T Consensus       261 G~~~W~~~~~~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~-~ssp~i--~g~~l~~~~~~G~l~~~  335 (377)
T TIGR03300       261 GRVLWKRDASSYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQ-LTAPAV--VGGYLVVGDFEGYLHWL  335 (377)
T ss_pred             CcEEEeeccCCccCceE--eCCEEEEECCCCeEEEEECCCCcEEEccccccCCc-cccCEE--ECCEEEEEeCCCEEEEE
Confidence            86543221111122222  45678888899999999999998876553211111 111111  35678889999999999


Q ss_pred             ECcCccceeeeccCc
Q 023772          256 DLVDASVVAKFKAHS  270 (277)
Q Consensus       256 d~~~~~~~~~~~~h~  270 (277)
                      |..+|+++.+++.+.
T Consensus       336 d~~tG~~~~~~~~~~  350 (377)
T TIGR03300       336 SREDGSFVARLKTDG  350 (377)
T ss_pred             ECCCCCEEEEEEcCC
Confidence            999999998888654

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.38  E-value=3.1e-10  Score=97.45  Aligned_cols=209  Identities=13%  Similarity=0.118  Sum_probs=123.0

Q ss_pred             ceeeccCCcEEEEEEeCCCCEEEEEeC-CC--cEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEE-EeCCCc--EE
Q 023772           12 NVLKGHEGAVLAARFNGDGNYCLSCGK-DR--TIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLIS-CGGDRQ--IF   85 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~-d~--~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t-~s~d~~--v~   85 (277)
                      ..+..+...+....|+|||+.|+..+. ++  .|.+||+.+++.... ..-.+......|+|+++.|+. .+.++.  |.
T Consensus       211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy  289 (448)
T PRK04792        211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKLALVLSKDGQPEIY  289 (448)
T ss_pred             eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEEEEEEeCCCCeEEE
Confidence            344556677889999999999886544 33  577889887764322 222234457899999998764 455664  77


Q ss_pred             EEECCCCceeEEeecccCceeEEEEecCCCEEEEEeC-CCc--EEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEe
Q 023772           86 YWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGY-DQS--LRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGG  162 (277)
Q Consensus        86 ~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  162 (277)
                      ++|+++++.. .+..+........|+|+++.++..+. ++.  |.++|+.+.....+. .......-..+.++++.++..
T Consensus       290 ~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~~~~SpDG~~l~~~  367 (448)
T PRK04792        290 VVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLGGSITPDGRSMIMV  367 (448)
T ss_pred             EEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcCeeECCCCCEEEEE
Confidence            8888877643 34445555677899999987766543 444  555566544322221 122111112344455555544


Q ss_pred             ec-CCc--EEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecCC---eEEEEECCCCceEEEEec
Q 023772          163 SV-DGT--VRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDS---TLRLLDRSTGELLQEYKG  224 (277)
Q Consensus       163 ~~-d~~--i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~---~i~~wd~~~~~~~~~~~~  224 (277)
                      +. ++.  |.++|+..++..............|+|+|++|+..+.++   .+++++. ++...+.+..
T Consensus       368 ~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~  434 (448)
T PRK04792        368 NRTNGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPA  434 (448)
T ss_pred             EecCCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcC
Confidence            33 343  455677665432111111122347999999887765433   3677776 4555555543

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.37  E-value=1.9e-11  Score=101.94  Aligned_cols=183  Identities=17%  Similarity=0.237  Sum_probs=129.9

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCC-CcceEeeccccCc
Q 023772           70 ADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHS-TEPIQIIDSFQDS  148 (277)
Q Consensus        70 ~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~  148 (277)
                      |...+++....||.+++||+..++....|.+-.                ..+.-++--.|.+.-.. +........    
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~----------------~~s~t~~~~~w~L~~~~s~~k~~~~~~----   62 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIA----------------SLSGTCTYTKWGLSADYSPMKWLSLEK----   62 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccch----------------hccCcceeEEEEEEeccchHHHHhHHH----
Confidence            445788889999999999999888766665311                11222333444432111 000000000    


Q ss_pred             EEEEEecCCeEEEeecCCcEEEEEccCCccc---c-cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEec
Q 023772          149 VMSVCLTKTEIIGGSVDGTVRTFDIRVGREL---S-DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKG  224 (277)
Q Consensus       149 ~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~---~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~  224 (277)
                      +.....+...++-|...|.|.+|+...++..   . ..+...|+++.++.+-..|-+++.|..+..|+...++.+..+..
T Consensus        63 ~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~  142 (541)
T KOG4547|consen   63 AKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKE  142 (541)
T ss_pred             HhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeecc
Confidence            1111122334777888999999998776532   2 35677899999998888999999999999999999998888876


Q ss_pred             cccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772          225 HICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL  276 (277)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  276 (277)
                      ...  .....|++||++.+++||.  +|++||+++++++.+|.+|..+|+.+
T Consensus       143 ~~~--~~~sl~is~D~~~l~~as~--~ik~~~~~~kevv~~ftgh~s~v~t~  190 (541)
T KOG4547|consen  143 QKP--LVSSLCISPDGKILLTASR--QIKVLDIETKEVVITFTGHGSPVRTL  190 (541)
T ss_pred             CCC--ccceEEEcCCCCEEEeccc--eEEEEEccCceEEEEecCCCcceEEE
Confidence            532  3455678999999998865  89999999999999999999999875

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.35  E-value=9.3e-09  Score=84.22  Aligned_cols=233  Identities=11%  Similarity=0.099  Sum_probs=145.4

Q ss_pred             EeCCCCEEEEEeC----------CCcEEEEcCCCCeeEEEEeccC-------ccEEEEEEcCCCCEEEEEe--CCCcEEE
Q 023772           26 FNGDGNYCLSCGK----------DRTIRLWNPHRGIHIKTYKSHG-------REVRDVHVTADNSKLISCG--GDRQIFY   86 (277)
Q Consensus        26 ~~~~~~~l~s~s~----------d~~v~iwd~~~~~~~~~~~~h~-------~~v~~~~~~~~~~~l~t~s--~d~~v~~   86 (277)
                      ++|||+.++.+..          +..|.+||..+.+.+..+....       .....++++|++++++...  .+..|-+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            8999998887655          8899999999999988886422       2344889999999988765  3789999


Q ss_pred             EECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcc---eEeecc-----ccCcEEEEEe-cCC
Q 023772           87 WDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEP---IQIIDS-----FQDSVMSVCL-TKT  157 (277)
Q Consensus        87 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~~~~~-----~~~~~~~~~~-~~~  157 (277)
                      .|+++++.+.++.--. ...-....+...++  -+.||......+.......   ...+..     ...+  .+.. ++.
T Consensus       133 vD~~~~kvv~ei~vp~-~~~vy~t~e~~~~~--~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP--~~~~~dg~  207 (352)
T TIGR02658       133 VDLEGKAFVRMMDVPD-CYHIFPTANDTFFM--HCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP--AYSNKSGR  207 (352)
T ss_pred             EECCCCcEEEEEeCCC-CcEEEEecCCccEE--EeecCceEEEEecCCCceEEeeeeeecCCccccccCC--ceEcCCCc
Confidence            9999999888765311 11111122222221  1234444332222111100   011111     0111  1122 344


Q ss_pred             eEEEeecCCcEEEEEccCCc-----ccccC---------CCCCeeEEEEeCCCCEEEEEe----------cCCeEEEEEC
Q 023772          158 EIIGGSVDGTVRTFDIRVGR-----ELSDD---------LGQPVNCISMSNDGNCILASC----------LDSTLRLLDR  213 (277)
Q Consensus       158 ~~~~g~~d~~i~i~d~~~~~-----~~~~~---------~~~~v~~~~~s~~~~~l~~~~----------~d~~i~~wd~  213 (277)
                      .++... .|+|.+.|+....     .+...         ...-+.-++++++++.++...          ..+.|.++|.
T Consensus       208 ~~~vs~-eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~  286 (352)
T TIGR02658       208 LVWPTY-TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA  286 (352)
T ss_pred             EEEEec-CCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence            444444 4999999964321     11110         112244599999999887743          1247999999


Q ss_pred             CCCceEEEEeccccceeeeeeEecCCCc-eEEeec-CCCeEEEEECcCccceeeec
Q 023772          214 STGELLQEYKGHICKSFKTDCCLTNSDA-HVTGGS-EDGYIYFWDLVDASVVAKFK  267 (277)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sgs-~d~~i~iwd~~~~~~~~~~~  267 (277)
                      .+++.+..+....   ......+++|++ +|++.. .++.|.+.|..+++.++++.
T Consensus       287 ~t~kvi~~i~vG~---~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~  339 (352)
T TIGR02658       287 KTGKRLRKIELGH---EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN  339 (352)
T ss_pred             CCCeEEEEEeCCC---ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence            9999998876321   234467899999 777555 67889999999999999883

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.35  E-value=5.1e-11  Score=92.51  Aligned_cols=240  Identities=18%  Similarity=0.303  Sum_probs=158.7

Q ss_pred             cCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC-----eeEEEEeccC------------ccEEEEEEcCCCC--EEEE
Q 023772           17 HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG-----IHIKTYKSHG------------REVRDVHVTADNS--KLIS   77 (277)
Q Consensus        17 H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~-----~~~~~~~~h~------------~~v~~~~~~~~~~--~l~t   77 (277)
                      ....|+++.|...|.|+++|...|.|.+|.-...     +....|+.|.            ..|..+.|..+++  .++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            3456899999999999999999999999964321     2233455554            3477777765443  4677


Q ss_pred             EeCCCcEEEEECCCCc-------------------e------------------e-----EEe-ecccCceeEEEEecCC
Q 023772           78 CGGDRQIFYWDVSTGR-------------------V------------------I-----RKF-RGHESEVNAVKFNEYS  114 (277)
Q Consensus        78 ~s~d~~v~~wd~~~~~-------------------~------------------~-----~~~-~~h~~~v~~i~~~~~~  114 (277)
                      .+.|++||+|-+-...                   +                  +     +.+ ..|..-++++.++.+.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            7899999999863220                   0                  0     111 3578889999999998


Q ss_pred             CEEEEEeCCCcEEEEeCccCCCcceEeec-------cccCcEEEEEecCC---eEEEeecCCcEEEEEccCCccc-----
Q 023772          115 SVVVSAGYDQSLRAWDCRSHSTEPIQIID-------SFQDSVMSVCLTKT---EIIGGSVDGTVRTFDIRVGREL-----  179 (277)
Q Consensus       115 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~---~~~~g~~d~~i~i~d~~~~~~~-----  179 (277)
                      +.++++ .|-.|.+|++..... ...+.+       .....+.+..+.|.   .+.-.+..|+|++-|+|+....     
T Consensus       185 et~lSa-DdLrINLWnl~i~D~-sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k  262 (460)
T COG5170         185 ETLLSA-DDLRINLWNLEIIDG-SFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK  262 (460)
T ss_pred             heeeec-cceeeeeccccccCC-ceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence            888874 677899999864321 111111       11123344444443   3556678899999999854321     


Q ss_pred             -cc----C--C------CCCeeEEEEeCCCCEEEEEecCCeEEEEECCC-CceEEEEecccc-------------ceeee
Q 023772          180 -SD----D--L------GQPVNCISMSNDGNCILASCLDSTLRLLDRST-GELLQEYKGHIC-------------KSFKT  232 (277)
Q Consensus       180 -~~----~--~------~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~-------------~~~~~  232 (277)
                       ..    .  .      -..|..+.|+++|+++++-.. -++++||... .+++.+..-|..             ..-..
T Consensus       263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkF  341 (460)
T COG5170         263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKF  341 (460)
T ss_pred             hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeE
Confidence             10    0  0      135777899999998877544 4899999875 456776654411             11234


Q ss_pred             eeEecCCCceEEeecCCCeEEEEECcC
Q 023772          233 DCCLTNSDAHVTGGSEDGYIYFWDLVD  259 (277)
Q Consensus       233 ~~~~~~~~~~l~sgs~d~~i~iwd~~~  259 (277)
                      .+.++.++..+++||..+.--+|-..+
T Consensus       342 eisfSgd~~~v~sgsy~NNfgiyp~~s  368 (460)
T COG5170         342 EISFSGDDKHVLSGSYSNNFGIYPTDS  368 (460)
T ss_pred             EEEecCCcccccccccccceeeecccc
Confidence            567788889999999888888886443

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.35  E-value=2.7e-10  Score=89.49  Aligned_cols=246  Identities=17%  Similarity=0.264  Sum_probs=164.7

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcC-CCCeeEE-EEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNP-HRGIHIK-TYKSHGREVRDVHVTADNSKLISCGGDRQIFYWD   88 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~-~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd   88 (277)
                      ...+.||.+.|+....-|..+-+++.+.|.++|||-- ..++.-. ....-..+++++.+.++..+|+.|-..|++.-+.
T Consensus        17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs   96 (404)
T KOG1409|consen   17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFA   96 (404)
T ss_pred             hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEE
Confidence            3456899999999888888888999999999999953 2333221 2222356899999999999999999999999987


Q ss_pred             CCC----CceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCc-cCCCcceEeeccccCcEEEEEecCCeEEEee
Q 023772           89 VST----GRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR-SHSTEPIQIIDSFQDSVMSVCLTKTEIIGGS  163 (277)
Q Consensus        89 ~~~----~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  163 (277)
                      +..    ...++.+..|.++|..+-|+...+.+++.+.|..+. |-.. ......-..+... .....+.+.  ....|-
T Consensus        97 ~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e~~~~lg~Y~~~~~-~t~~~~d~~--~~fvGd  172 (404)
T KOG1409|consen   97 LSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTESGNRLGGYNFETP-ASALQFDAL--YAFVGD  172 (404)
T ss_pred             hhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceE-EEeeccCCcccceEeecc-CCCCceeeE--EEEecc
Confidence            743    345677888999999999999999999999998765 4432 2221111111110 000111111  233344


Q ss_pred             cCCcEEEEEccC--Cccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCce-EEEEeccccceeeeeeEecC
Q 023772          164 VDGTVRTFDIRV--GRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGEL-LQEYKGHICKSFKTDCCLTN  238 (277)
Q Consensus       164 ~d~~i~i~d~~~--~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~  238 (277)
                      ..|.+..-.+..  ...+..  .+..++.+++|.|....|++|..|..+-+||+.-++- ..+..+|.+.+...  +.-+
T Consensus       173 ~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l--~~~~  250 (404)
T KOG1409|consen  173 HSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQAL--SYAQ  250 (404)
T ss_pred             cccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhh--hhhh
Confidence            444444433221  122222  3456899999999999999999999999999864433 34556665543222  2223


Q ss_pred             CCceEEeecCCCeEEEEECcCccc
Q 023772          239 SDAHVTGGSEDGYIYFWDLVDASV  262 (277)
Q Consensus       239 ~~~~l~sgs~d~~i~iwd~~~~~~  262 (277)
                      --+.+.++++||.|.+||.+..+.
T Consensus       251 ~t~~l~S~~edg~i~~w~mn~~r~  274 (404)
T KOG1409|consen  251 HTRQLISCGEDGGIVVWNMNVKRV  274 (404)
T ss_pred             hheeeeeccCCCeEEEEeccceee
Confidence            345688899999999999886544

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.34  E-value=1.4e-11  Score=100.54  Aligned_cols=246  Identities=17%  Similarity=0.239  Sum_probs=171.4

Q ss_pred             eeccCCcEEEEEEeCC--CCEEEEEeCCCcEEEEcCC-CCee--EEEEeccCccEEEEEEcCCCC-EEEEEeCCCcEEEE
Q 023772           14 LKGHEGAVLAARFNGD--GNYCLSCGKDRTIRLWNPH-RGIH--IKTYKSHGREVRDVHVTADNS-KLISCGGDRQIFYW   87 (277)
Q Consensus        14 l~~H~~~V~~~~~~~~--~~~l~s~s~d~~v~iwd~~-~~~~--~~~~~~h~~~v~~~~~~~~~~-~l~t~s~d~~v~~w   87 (277)
                      -.||...|.-..|-|.  ..-+++++.||.+|+=.+. ++.+  .+.+..|.++|.-++..|... .|++++.|+.++-+
T Consensus       181 ~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~  260 (559)
T KOG1334|consen  181 ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHI  260 (559)
T ss_pred             ccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeee
Confidence            3578888888888773  4688999999999997643 3332  345667999999999998764 58999999999999


Q ss_pred             ECCCCceeEE---eecccC---ceeEEEEecCCC-EEEEEeCCCcEEEEeCccCCCcceEe----e------ccccCcEE
Q 023772           88 DVSTGRVIRK---FRGHES---EVNAVKFNEYSS-VVVSAGYDQSLRAWDCRSHSTEPIQI----I------DSFQDSVM  150 (277)
Q Consensus        88 d~~~~~~~~~---~~~h~~---~v~~i~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~----~------~~~~~~~~  150 (277)
                      |+.++.+-..   -..+..   ...+++.+|... .++.++.|-.+++||.+....+....    +      ......|+
T Consensus       261 Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~IT  340 (559)
T KOG1334|consen  261 DLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNIT  340 (559)
T ss_pred             eeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccce
Confidence            9987654322   223333   567888888755 79999999999999987644331111    0      11122344


Q ss_pred             EEEe--cCCeEEEeecCCcEEEEEccCCcc------------ccc-CC----CCCeeEEE-EeCCCCEEEEEecCCeEEE
Q 023772          151 SVCL--TKTEIIGGSVDGTVRTFDIRVGRE------------LSD-DL----GQPVNCIS-MSNDGNCILASCLDSTLRL  210 (277)
Q Consensus       151 ~~~~--~~~~~~~g~~d~~i~i~d~~~~~~------------~~~-~~----~~~v~~~~-~s~~~~~l~~~~~d~~i~~  210 (277)
                      .+..  .+..+++.-.|-.|.++.-..+.-            ... ..    ...|..+- |-|...|+++||.-|.|.|
T Consensus       341 gl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFi  420 (559)
T KOG1334|consen  341 GLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFI  420 (559)
T ss_pred             eEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEE
Confidence            4444  455677777788888885432211            000 11    12366665 4678899999999999999


Q ss_pred             EECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCcc
Q 023772          211 LDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDAS  261 (277)
Q Consensus       211 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~  261 (277)
                      |+-.+++.++.+.+...  ++...-..|--..||+.+-|.-||||-..+.+
T Consensus       421 W~K~t~eii~~MegDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~e  469 (559)
T KOG1334|consen  421 WDKKTGEIIRFMEGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTAE  469 (559)
T ss_pred             EecchhHHHHHhhcccc--eEeccCCCCCCchhhccCCccceeeecCCccc
Confidence            99999999988876532  22222345667789999999999999875443

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.34  E-value=2.5e-08  Score=83.03  Aligned_cols=243  Identities=15%  Similarity=0.208  Sum_probs=150.5

Q ss_pred             EEEEEEeCCCCEEEEEeC----CCcEEEEcCCC--Cee--EEEEeccCccEEEEEEcCCCCEEEEEe-CCCcEEEEECCC
Q 023772           21 VLAARFNGDGNYCLSCGK----DRTIRLWNPHR--GIH--IKTYKSHGREVRDVHVTADNSKLISCG-GDRQIFYWDVST   91 (277)
Q Consensus        21 V~~~~~~~~~~~l~s~s~----d~~v~iwd~~~--~~~--~~~~~~h~~~v~~~~~~~~~~~l~t~s-~d~~v~~wd~~~   91 (277)
                      ...+++++++++|.+..+    ++.|..|++..  +.+  +............+++++++++|+++. .++++.++++..
T Consensus        39 Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~  118 (345)
T PF10282_consen   39 PSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDD  118 (345)
T ss_dssp             ECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccC
Confidence            456888999999998876    57898887665  332  333432344556799999999998886 589999999986


Q ss_pred             -CceeEE---ee----------cccCceeEEEEecCCCEEEEEe-CCCcEEEEeCccCCCc--ceEeec-cccCcEEEEE
Q 023772           92 -GRVIRK---FR----------GHESEVNAVKFNEYSSVVVSAG-YDQSLRAWDCRSHSTE--PIQIID-SFQDSVMSVC  153 (277)
Q Consensus        92 -~~~~~~---~~----------~h~~~v~~i~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~--~~~~~~-~~~~~~~~~~  153 (277)
                       +.+...   +.          .......++.++|++++++... ....|.+|++......  +...+. ........+.
T Consensus       119 ~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~  198 (345)
T PF10282_consen  119 DGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLA  198 (345)
T ss_dssp             TSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEE
T ss_pred             CcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEE
Confidence             433222   21          1124467899999999777653 3457999998755421  111111 1222334455


Q ss_pred             ecCC--e-EEEeecCCcEEEEEcc--CCcc-----ccc---CC-C-CCeeEEEEeCCCCEEEEE-ecCCeEEEEECC--C
Q 023772          154 LTKT--E-IIGGSVDGTVRTFDIR--VGRE-----LSD---DL-G-QPVNCISMSNDGNCILAS-CLDSTLRLLDRS--T  215 (277)
Q Consensus       154 ~~~~--~-~~~g~~d~~i~i~d~~--~~~~-----~~~---~~-~-~~v~~~~~s~~~~~l~~~-~~d~~i~~wd~~--~  215 (277)
                      ++++  . .++...+++|.+|++.  .+..     +..   .. . .....+.++|+|++|.++ ..+++|-+|++.  +
T Consensus       199 f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~  278 (345)
T PF10282_consen  199 FSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPAT  278 (345)
T ss_dssp             E-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTT
T ss_pred             EcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCC
Confidence            5443  4 4556678889999887  3211     111   11 1 257789999999987665 467789999983  3


Q ss_pred             Cce--EEEEeccccceeeeeeEecCCCceEEee-cCCCeEEEEEC--cCccceee
Q 023772          216 GEL--LQEYKGHICKSFKTDCCLTNSDAHVTGG-SEDGYIYFWDL--VDASVVAK  265 (277)
Q Consensus       216 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~sg-s~d~~i~iwd~--~~~~~~~~  265 (277)
                      +++  +..+...  ......+.++|+|++|+++ -.++.|.+|++  .+|.+...
T Consensus       279 g~l~~~~~~~~~--G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~  331 (345)
T PF10282_consen  279 GTLTLVQTVPTG--GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPV  331 (345)
T ss_dssp             TTEEEEEEEEES--SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred             CceEEEEEEeCC--CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence            443  3333221  2235667889999998865 47778999976  46665433

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=6.6e-10  Score=92.45  Aligned_cols=237  Identities=14%  Similarity=0.222  Sum_probs=144.5

Q ss_pred             CCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEE-----eCC-----CcEEEE
Q 023772           18 EGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISC-----GGD-----RQIFYW   87 (277)
Q Consensus        18 ~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~-----s~d-----~~v~~w   87 (277)
                      ..+++..+++++|++++- +.+..++|++..++..+.+...  ....++.|+|.+.+|.|=     ..+     -.+++|
T Consensus        34 ~~~~~v~~~S~~G~lfA~-~~~~~v~i~~~~~~~~~lt~~~--~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~  110 (566)
T KOG2315|consen   34 SRPCNVFAYSNNGRLFAY-SDNQVVKVFEIATLKVVLCVEL--KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY  110 (566)
T ss_pred             CCcceeEEEcCCCcEEEE-EcCCeEEEEEccCCcEEEEecc--ceeeeeeecccccccccccccccccCCCCCCCceeee
Confidence            455777888999877665 5668999999888754444443  278999999999988762     222     346799


Q ss_pred             ECCCCceeEEeec----------------------------------------ccCceeEEEEecCCC--EEEE-----E
Q 023772           88 DVSTGRVIRKFRG----------------------------------------HESEVNAVKFNEYSS--VVVS-----A  120 (277)
Q Consensus        88 d~~~~~~~~~~~~----------------------------------------h~~~v~~i~~~~~~~--~l~s-----~  120 (277)
                      +++++.....+..                                        |...++...++|...  .+++     .
T Consensus       111 ~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~k  190 (566)
T KOG2315|consen  111 NVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKK  190 (566)
T ss_pred             eeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCC
Confidence            9988543322211                                        334444455554411  1111     1


Q ss_pred             eCCCcEEEEeCccCCC------------cceEe----------------------------------e--------cccc
Q 023772          121 GYDQSLRAWDCRSHST------------EPIQI----------------------------------I--------DSFQ  146 (277)
Q Consensus       121 ~~d~~i~iwd~~~~~~------------~~~~~----------------------------------~--------~~~~  146 (277)
                      |.-..+++|.......            ..++.                                  .        -...
T Consensus       191 GaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~  270 (566)
T KOG2315|consen  191 GAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKE  270 (566)
T ss_pred             CCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCC
Confidence            3334456665431000            00000                                  0        0012


Q ss_pred             CcEEEEEecCCe----EEEeecCCcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEec---CCeEEEEECCCCceE
Q 023772          147 DSVMSVCLTKTE----IIGGSVDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCL---DSTLRLLDRSTGELL  219 (277)
Q Consensus       147 ~~~~~~~~~~~~----~~~g~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~~wd~~~~~~~  219 (277)
                      ++|.++.+++..    ++-|-+--++.+||++-. .+...-.++=+++-|+|.|++|+.++.   -|.+-+||+.+.+++
T Consensus       271 GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i  349 (566)
T KOG2315|consen  271 GPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-PVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLI  349 (566)
T ss_pred             CCceEEEECCCCCEEEEEEecccceEEEEcCCCC-EeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhc
Confidence            344445544332    233445556666666532 223333456788999999999988775   468999999998888


Q ss_pred             EEEeccccceeeeeeEecCCCceEEeecC------CCeEEEEECcCccce
Q 023772          220 QEYKGHICKSFKTDCCLTNSDAHVTGGSE------DGYIYFWDLVDASVV  263 (277)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~l~sgs~------d~~i~iwd~~~~~~~  263 (277)
                      ..+....    .+.+.++|||.++++++.      |+-++||+.. |.++
T Consensus       350 ~~~~a~~----tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l  394 (566)
T KOG2315|consen  350 AKFKAAN----TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLL  394 (566)
T ss_pred             cccccCC----ceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-Ccee
Confidence            8776542    345678999999988753      7889999985 4444

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=4.5e-09  Score=90.24  Aligned_cols=220  Identities=12%  Similarity=0.097  Sum_probs=131.7

Q ss_pred             cEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeEEeecccCceeEEEEecCCCEE
Q 023772           41 TIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGD---RQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVV  117 (277)
Q Consensus        41 ~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d---~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l  117 (277)
                      .|.++|...+. .+.+..+...+.+..|+|++++|+..+.+   ..|.+||+.+++... +......+....|+|+++.+
T Consensus       180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l  257 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL  257 (430)
T ss_pred             EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence            46777776443 34455566789999999999999876644   368999998876532 22233445568999999877


Q ss_pred             E-EEeCCC--cEEEEeCccCCCcceEeeccccCcEEEEEe--cCCeEEEee-cCC--cEEEEEccCCcccccC-CCCCee
Q 023772          118 V-SAGYDQ--SLRAWDCRSHSTEPIQIIDSFQDSVMSVCL--TKTEIIGGS-VDG--TVRTFDIRVGRELSDD-LGQPVN  188 (277)
Q Consensus       118 ~-s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~-~d~--~i~i~d~~~~~~~~~~-~~~~v~  188 (277)
                      + +.+.++  .|.++|+.+.....   +...........+  ++..++..+ .++  .|.++|+..++..... ......
T Consensus       258 a~~~~~~g~~~Iy~~d~~~~~~~~---lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~  334 (430)
T PRK00178        258 AFVLSKDGNPEIYVMDLASRQLSR---VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNA  334 (430)
T ss_pred             EEEEccCCCceEEEEECCCCCeEE---cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCcc
Confidence            6 455555  57777887543221   2222222222333  445555443 333  4666677655422111 122234


Q ss_pred             EEEEeCCCCEEEEEecC-C--eEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCC---CeEEEEECcCccc
Q 023772          189 CISMSNDGNCILASCLD-S--TLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSED---GYIYFWDLVDASV  262 (277)
Q Consensus       189 ~~~~s~~~~~l~~~~~d-~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d---~~i~iwd~~~~~~  262 (277)
                      ...|+|+|++|+..+.+ +  .|.+||+.+++.. .+.... .  .....++|+|++++..+.+   ..|++++.. +..
T Consensus       335 ~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~~~-~--~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~  409 (430)
T PRK00178        335 RPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTDTS-L--DESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRV  409 (430)
T ss_pred             ceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccCCC-C--CCCceECCCCCEEEEEEecCCceEEEEEECC-CCc
Confidence            56899999998777643 2  5888999887643 332211 1  1234689999988765433   357777874 445


Q ss_pred             eeeeccCc
Q 023772          263 VAKFKAHS  270 (277)
Q Consensus       263 ~~~~~~h~  270 (277)
                      ...+..+.
T Consensus       410 ~~~l~~~~  417 (430)
T PRK00178        410 RLPLPTAQ  417 (430)
T ss_pred             eEECcCCC
Confidence            55555443

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.32  E-value=1e-09  Score=84.65  Aligned_cols=239  Identities=22%  Similarity=0.280  Sum_probs=150.9

Q ss_pred             CcEEEEEEe---CCCC-EEEEEeCCCcEEEEcCCCCeeEEEEeccC------ccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023772           19 GAVLAARFN---GDGN-YCLSCGKDRTIRLWNPHRGIHIKTYKSHG------REVRDVHVTADNSKLISCGGDRQIFYWD   88 (277)
Q Consensus        19 ~~V~~~~~~---~~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~h~------~~v~~~~~~~~~~~l~t~s~d~~v~~wd   88 (277)
                      ..++.+.|.   .+|. .++-+-.+|.|.++..........+++-+      ....++.|++.+..++++-.+|.+.+-+
T Consensus        70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~  149 (339)
T KOG0280|consen   70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVY  149 (339)
T ss_pred             cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEe
Confidence            345566665   2455 55667778889888654333333332211      1245778899999999999999998665


Q ss_pred             CCCCce--eEEeecccCceeEEEEecC-CCEEEEEeCCCcEEEEeCccCCCcceEe-eccccCcEEEEEec---CCeEEE
Q 023772           89 VSTGRV--IRKFRGHESEVNAVKFNEY-SSVVVSAGYDQSLRAWDCRSHSTEPIQI-IDSFQDSVMSVCLT---KTEIIG  161 (277)
Q Consensus        89 ~~~~~~--~~~~~~h~~~v~~i~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~  161 (277)
                      .....+  +++++.|.-+.+-..|+.. .+++.+||.|+.+..||+|.+. +.+.. ...|...|.++..+   |..+++
T Consensus       150 ~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~i~~n~kvH~~GV~SI~ss~~~~~~I~T  228 (339)
T KOG0280|consen  150 ETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TFIWHNSKVHTSGVVSIYSSPPKPTYIAT  228 (339)
T ss_pred             cceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-ceeeecceeeecceEEEecCCCCCceEEE
Confidence            544433  4478999999999999754 5689999999999999999433 21111 23345556666544   457999


Q ss_pred             eecCCcEEEEEccC-Cccccc-CCCCCeeEEEEeCCCC-EEEEEecCCeEEEEECCCCce-----EEEEeccccceeeee
Q 023772          162 GSVDGTVRTFDIRV-GRELSD-DLGQPVNCISMSNDGN-CILASCLDSTLRLLDRSTGEL-----LQEYKGHICKSFKTD  233 (277)
Q Consensus       162 g~~d~~i~i~d~~~-~~~~~~-~~~~~v~~~~~s~~~~-~l~~~~~d~~i~~wd~~~~~~-----~~~~~~~~~~~~~~~  233 (277)
                      |++|-.|++||.|+ ++.+.. ..+.-|..+..+|.-. .+++++.-+-.++-+.+.+..     ...++.|....+.-+
T Consensus       229 GsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~D  308 (339)
T KOG0280|consen  229 GSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGD  308 (339)
T ss_pred             eccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccc
Confidence            99999999999995 444433 4557788899888532 233334444467777654322     233444543333333


Q ss_pred             eEecCCCceEEee-cCCCeEE-EEECcCc
Q 023772          234 CCLTNSDAHVTGG-SEDGYIY-FWDLVDA  260 (277)
Q Consensus       234 ~~~~~~~~~l~sg-s~d~~i~-iwd~~~~  260 (277)
                      +  .....++||+ ..|+.++ +|-.-++
T Consensus       309 W--d~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  309 W--DSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             c--ccccceeeeeeccccceeeeeeeccC
Confidence            2  1223457764 3677755 7754444

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.31  E-value=9.3e-11  Score=95.12  Aligned_cols=255  Identities=16%  Similarity=0.143  Sum_probs=172.4

Q ss_pred             ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCC--C-eeEEEEeccCccEEEEEEcCCCCEEEEEeC-CCcEEEEECCC
Q 023772           16 GHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHR--G-IHIKTYKSHGREVRDVHVTADNSKLISCGG-DRQIFYWDVST   91 (277)
Q Consensus        16 ~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~--~-~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~-d~~v~~wd~~~   91 (277)
                      -|.+.|+.+.- ...+++.+++.||.++.|-...  | +.++.+..|-+.+.+++.+-++-.+.|.+. |..+|++|+++
T Consensus         7 mhrd~i~hv~~-tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn   85 (558)
T KOG0882|consen    7 MHRDVITHVFP-TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN   85 (558)
T ss_pred             cccceeeeEee-ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence            37888877643 4567999999999999997432  2 345667889999999999999999999777 99999999986


Q ss_pred             CceeE--EeecccCceeEEEEecCC----CEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEe--cCCeEEEee
Q 023772           92 GRVIR--KFRGHESEVNAVKFNEYS----SVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCL--TKTEIIGGS  163 (277)
Q Consensus        92 ~~~~~--~~~~h~~~v~~i~~~~~~----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~  163 (277)
                      -..+.  .+..-...+. + +...+    .+.++.-.++.+.++|......+....-..|..++.....  ..+.+++..
T Consensus        86 ~DminmiKL~~lPg~a~-w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD  163 (558)
T KOG0882|consen   86 FDMINMIKLVDLPGFAE-W-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID  163 (558)
T ss_pred             cchhhhcccccCCCceE-E-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc
Confidence            54321  1111112211 1 11112    2334445689999999876544444333445555554444  345577777


Q ss_pred             cCCcEEEEEccCCccc-------cc----------CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEecc-
Q 023772          164 VDGTVRTFDIRVGREL-------SD----------DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGH-  225 (277)
Q Consensus       164 ~d~~i~i~d~~~~~~~-------~~----------~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-  225 (277)
                      ..|.|..|......+.       ..          .......++.|+|+|..+.+-+.|..|++++.+++++++.+.-. 
T Consensus       164 ~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~  243 (558)
T KOG0882|consen  164 ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVL  243 (558)
T ss_pred             ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccc
Confidence            7899999987631111       00          11245788999999999999999999999999998776554311 


Q ss_pred             ------------------------------ccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCcceeEe
Q 023772          226 ------------------------------ICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKL  275 (277)
Q Consensus       226 ------------------------------~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~  275 (277)
                                                    ......+..+|...+++|.-|+-=| |++.++.+++++..+... .+||+
T Consensus       244 t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~-e~ir~  321 (558)
T KOG0882|consen  244 TDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGKD-EAIRF  321 (558)
T ss_pred             hhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEeccc-hhhhh
Confidence                                          0112334556777788988888765 999999999988777543 34443

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=4.3e-09  Score=90.46  Aligned_cols=221  Identities=13%  Similarity=0.067  Sum_probs=129.3

Q ss_pred             cEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeEEeecccCceeEEEEecCCCEE
Q 023772           41 TIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGD---RQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVV  117 (277)
Q Consensus        41 ~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d---~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l  117 (277)
                      .+.++|..... .+.+..+...+.+..|+|++++|+-.+.+   ..|.+||+.+++... +...........|+|+++.|
T Consensus       199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L  276 (448)
T PRK04792        199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL  276 (448)
T ss_pred             EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence            56666754433 34444556788999999999998876543   258899998876432 22222334467899999977


Q ss_pred             EE-EeCCCc--EEEEeCccCCCcceEeeccccCcEEEEEe--cCCeEEEee-cCC--cEEEEEccCCccccc-CCCCCee
Q 023772          118 VS-AGYDQS--LRAWDCRSHSTEPIQIIDSFQDSVMSVCL--TKTEIIGGS-VDG--TVRTFDIRVGRELSD-DLGQPVN  188 (277)
Q Consensus       118 ~s-~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~-~d~--~i~i~d~~~~~~~~~-~~~~~v~  188 (277)
                      +. .+.++.  |.++|+.+.....   +...........+  ++..++..+ .++  .|.++|+..++.... ..+....
T Consensus       277 a~~~~~~g~~~Iy~~dl~tg~~~~---lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~  353 (448)
T PRK04792        277 ALVLSKDGQPEIYVVDIATKALTR---ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNL  353 (448)
T ss_pred             EEEEeCCCCeEEEEEECCCCCeEE---CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCc
Confidence            64 566675  6666776543222   2222222223333  445555433 334  455667765543221 1222234


Q ss_pred             EEEEeCCCCEEEEEecC-C--eEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeec-CCC--eEEEEECcCccc
Q 023772          189 CISMSNDGNCILASCLD-S--TLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGS-EDG--YIYFWDLVDASV  262 (277)
Q Consensus       189 ~~~~s~~~~~l~~~~~d-~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs-~d~--~i~iwd~~~~~~  262 (277)
                      ..+|+|+|++|+..+.+ +  .|.++|+.+++.. .+....   ......++|+++.++..+ .++  .+++++. +|..
T Consensus       354 ~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~---~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~  428 (448)
T PRK04792        354 GGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTR---LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRF  428 (448)
T ss_pred             CeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCc
Confidence            56899999998776543 3  4566788777643 332221   112346899999877544 333  4777887 5777


Q ss_pred             eeeeccCcc
Q 023772          263 VAKFKAHSL  271 (277)
Q Consensus       263 ~~~~~~h~~  271 (277)
                      ...+..+.+
T Consensus       429 ~~~l~~~~g  437 (448)
T PRK04792        429 KARLPAGQG  437 (448)
T ss_pred             eEECcCCCC
Confidence            777765543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.29  E-value=3.5e-09  Score=80.76  Aligned_cols=231  Identities=13%  Similarity=-0.012  Sum_probs=144.9

Q ss_pred             CCCEEEEEeCCCcEEEEcCCCCe-eEEEEeccCccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEeecccCcee
Q 023772           29 DGNYCLSCGKDRTIRLWNPHRGI-HIKTYKSHGREVRDVHVTA-DNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVN  106 (277)
Q Consensus        29 ~~~~l~s~s~d~~v~iwd~~~~~-~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~  106 (277)
                      ...+|+.||.-|...+|...+.. .......|...|+-+.=.. ....+.-++.|.++|+.+++.+..........-.++
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n  162 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN  162 (344)
T ss_pred             cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence            34588999999999999988653 3334444443332221111 123466788999999999875543322221112378


Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEee-ccccCc--EEEEEecCCeEEEeecCCcEEEEEccCCccc----
Q 023772          107 AVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQII-DSFQDS--VMSVCLTKTEIIGGSVDGTVRTFDIRVGREL----  179 (277)
Q Consensus       107 ~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~----  179 (277)
                      ++.++++++++++.+.-..|..|.+.........+. ....+.  ..++.-....++++..||++.|||+|.....    
T Consensus       163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~  242 (344)
T KOG4532|consen  163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI  242 (344)
T ss_pred             eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence            899999999999999999999999865433222211 112222  2333334456999999999999999875432    


Q ss_pred             ---ccCCCCCeeEEEEeCCCC--EEEEEecCCeEEEEECCCCceEEEEecccc------ceeeeeeEecCCCceEEeecC
Q 023772          180 ---SDDLGQPVNCISMSNDGN--CILASCLDSTLRLLDRSTGELLQEYKGHIC------KSFKTDCCLTNSDAHVTGGSE  248 (277)
Q Consensus       180 ---~~~~~~~v~~~~~s~~~~--~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~sgs~  248 (277)
                         ...+...++.+.|++-|.  .|+..-.-+.+.+.|+++++-.+.+.-...      ...+.-.+++.++..+.+.++
T Consensus       243 sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e  322 (344)
T KOG4532|consen  243 SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNE  322 (344)
T ss_pred             cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccc
Confidence               123567899999998653  455555566899999998765544322111      111333456666666666555


Q ss_pred             CCeEEEEECcCc
Q 023772          249 DGYIYFWDLVDA  260 (277)
Q Consensus       249 d~~i~iwd~~~~  260 (277)
                      + .+.-|++...
T Consensus       323 ~-~~ae~ni~sr  333 (344)
T KOG4532|consen  323 L-QGAEYNILSR  333 (344)
T ss_pred             h-hhheeecccc
Confidence            4 4666776643

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.28  E-value=6.4e-09  Score=81.94  Aligned_cols=215  Identities=22%  Similarity=0.281  Sum_probs=135.5

Q ss_pred             CCcEEEEcCCCCeeEEEEeccCccEEEEE--EcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCE
Q 023772           39 DRTIRLWNPHRGIHIKTYKSHGREVRDVH--VTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSV  116 (277)
Q Consensus        39 d~~v~iwd~~~~~~~~~~~~h~~~v~~~~--~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~  116 (277)
                      +++|..||..+|+.+-....- .......  ..++++++++++.++.+..||..+|+.+.++.. ..++.... ...+..
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~   78 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLG-PGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGR   78 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECS-SSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTE
T ss_pred             CCEEEEEECCCCCEEEEEECC-CCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccc
Confidence            689999999999988777541 1121111  333567888889999999999999999887765 33322222 223456


Q ss_pred             EEEEeCCCcEEEEeCccCCCcce-Eeeccc---cCcEEEEEecCCeEEEeecCCcEEEEEccCCcccccC-CC-----CC
Q 023772          117 VVSAGYDQSLRAWDCRSHSTEPI-QIIDSF---QDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDD-LG-----QP  186 (277)
Q Consensus       117 l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~-~~-----~~  186 (277)
                      ++.++.|+.+..+|..++..... ......   ........+.++.++.+..++.|..+|+++++.+... ..     .+
T Consensus        79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~  158 (238)
T PF13360_consen   79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP  158 (238)
T ss_dssp             EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred             cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence            66667888999999776654322 111100   1112334445777888888999999999988764321 11     11


Q ss_pred             ------eeEEEEeCCCCEEEEEecCCe-EEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcC
Q 023772          187 ------VNCISMSNDGNCILASCLDST-LRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVD  259 (277)
Q Consensus       187 ------v~~~~~s~~~~~l~~~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~  259 (277)
                            +..-.+..++ .++.+..++. +.+ |..+++.+....  ...   ....+...+..++.++.++.|..||+.+
T Consensus       159 ~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~---~~~~~~~~~~~l~~~~~~~~l~~~d~~t  231 (238)
T PF13360_consen  159 ISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP--ISG---IYSLPSVDGGTLYVTSSDGRLYALDLKT  231 (238)
T ss_dssp             EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC--SS----ECECEECCCTEEEEEETTTEEEEEETTT
T ss_pred             eeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec--CCC---ccCCceeeCCEEEEEeCCCEEEEEECCC
Confidence                  1222222344 6777777775 555 999998664332  111   1112345677777777999999999999


Q ss_pred             ccce
Q 023772          260 ASVV  263 (277)
Q Consensus       260 ~~~~  263 (277)
                      |+.+
T Consensus       232 G~~~  235 (238)
T PF13360_consen  232 GKVV  235 (238)
T ss_dssp             TEEE
T ss_pred             CCEE
Confidence            9875

...

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.27  E-value=2.8e-08  Score=93.31  Aligned_cols=238  Identities=16%  Similarity=0.158  Sum_probs=152.5

Q ss_pred             EEEEEeCC-CCEEEEEeCCCcEEEEcCCCCeeEEEEec--------------cCccEEEEEEcCCCCEEEEE-eCCCcEE
Q 023772           22 LAARFNGD-GNYCLSCGKDRTIRLWNPHRGIHIKTYKS--------------HGREVRDVHVTADNSKLISC-GGDRQIF   85 (277)
Q Consensus        22 ~~~~~~~~-~~~l~s~s~d~~v~iwd~~~~~~~~~~~~--------------h~~~v~~~~~~~~~~~l~t~-s~d~~v~   85 (277)
                      ..+++++. +.+.++-+.++.|++||.. +..+..+..              +-.....+++.++++.|+.+ ...+.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            35788874 6677777888999999975 444443332              11235789999888766554 4557899


Q ss_pred             EEECCCCceeEEeecc-----------------cCceeEEEEec-CCCEEEEEeCCCcEEEEeCccCCCcceE------e
Q 023772           86 YWDVSTGRVIRKFRGH-----------------ESEVNAVKFNE-YSSVVVSAGYDQSLRAWDCRSHSTEPIQ------I  141 (277)
Q Consensus        86 ~wd~~~~~~~~~~~~h-----------------~~~v~~i~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~------~  141 (277)
                      .+|..++.. .++.+-                 -..-+.+++++ ++.++++.+.++.|++||..........      .
T Consensus       650 ~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~  728 (1057)
T PLN02919        650 EIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERN  728 (1057)
T ss_pred             EEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcccc
Confidence            999877653 333210                 01235789998 5667788888999999997653211000      0


Q ss_pred             ecc------ccCcEEEEEecC--Ce-EEEeecCCcEEEEEccCCcccc---------c---C-----------CCCCeeE
Q 023772          142 IDS------FQDSVMSVCLTK--TE-IIGGSVDGTVRTFDIRVGRELS---------D---D-----------LGQPVNC  189 (277)
Q Consensus       142 ~~~------~~~~~~~~~~~~--~~-~~~g~~d~~i~i~d~~~~~~~~---------~---~-----------~~~~v~~  189 (277)
                      ...      .......+.+++  .. +++.+.++.|++||+.++....         .   .           .-.....
T Consensus       729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G  808 (1057)
T PLN02919        729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG  808 (1057)
T ss_pred             CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence            000      001122344443  43 4556667899999987643210         0   0           0113468


Q ss_pred             EEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccc------------cceeeeeeEecCCCceEEeecCCCeEEEEEC
Q 023772          190 ISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHI------------CKSFKTDCCLTNSDAHVTGGSEDGYIYFWDL  257 (277)
Q Consensus       190 ~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~  257 (277)
                      ++++++|+.+++-..++.|++||..++.... +.+..            .......++++++|+++++-+.++.|++||+
T Consensus       809 vavd~dG~LYVADs~N~rIrviD~~tg~v~t-iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~  887 (1057)
T PLN02919        809 VLCAKDGQIYVADSYNHKIKKLDPATKRVTT-LAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL  887 (1057)
T ss_pred             eeEeCCCcEEEEECCCCEEEEEECCCCeEEE-EeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence            8999999988998999999999998776543 22211            0112344577889998888899999999999


Q ss_pred             cCccc
Q 023772          258 VDASV  262 (277)
Q Consensus       258 ~~~~~  262 (277)
                      .+++.
T Consensus       888 ~~~~~  892 (1057)
T PLN02919        888 NKGEA  892 (1057)
T ss_pred             CCCcc
Confidence            98865

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.26  E-value=3.1e-10  Score=89.16  Aligned_cols=121  Identities=22%  Similarity=0.398  Sum_probs=99.7

Q ss_pred             eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCC-----------------------------------------Ce
Q 023772           13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHR-----------------------------------------GI   51 (277)
Q Consensus        13 ~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~-----------------------------------------~~   51 (277)
                      ....|.+.|..+.|+...+++++++.|..+.---.+.                                         -.
T Consensus       109 ~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~  188 (404)
T KOG1409|consen  109 DYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQ  188 (404)
T ss_pred             hhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCc
Confidence            3468999999999999999999999987653221111                                         12


Q ss_pred             eEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEe
Q 023772           52 HIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGR-VIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWD  130 (277)
Q Consensus        52 ~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~-~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd  130 (277)
                      .+.++.+|.+++.+++|.+....+++|..|..+.+||+...+ ....+.+|...|..+...+--+.+++++.||.|-+|+
T Consensus       189 ~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~  268 (404)
T KOG1409|consen  189 LITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWN  268 (404)
T ss_pred             eEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEe
Confidence            345678899999999999999999999999999999997543 4556788999999999888889999999999999999


Q ss_pred             Ccc
Q 023772          131 CRS  133 (277)
Q Consensus       131 ~~~  133 (277)
                      .+.
T Consensus       269 mn~  271 (404)
T KOG1409|consen  269 MNV  271 (404)
T ss_pred             ccc
Confidence            864

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.23  E-value=2.1e-08  Score=84.64  Aligned_cols=225  Identities=17%  Similarity=0.167  Sum_probs=142.5

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEE
Q 023772           30 GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVK  109 (277)
Q Consensus        30 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~  109 (277)
                      +..++.++.++.+.-+|..+|+.+-.++...........  ++..++.++.++.+..+|.++|+.+.+..... .+.+..
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p  141 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPP  141 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCC
Confidence            567888889999999999999887666544332222222  46788888899999999999999887655322 222111


Q ss_pred             EecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccC---cEEEEEecCCeEEEeecCCcEEEEEccCCcccccC-CCC
Q 023772          110 FNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQD---SVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDD-LGQ  185 (277)
Q Consensus       110 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~-~~~  185 (277)
                      .. .+..++.++.|+.+..||.+++.............   ...........++.+..++.+..+|.++++..... ...
T Consensus       142 ~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~  220 (377)
T TIGR03300       142 LV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVAL  220 (377)
T ss_pred             EE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeecccc
Confidence            11 24466777889999999987654321111111000   00011112345777888899999999887653221 100


Q ss_pred             -----C------e-eEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEE
Q 023772          186 -----P------V-NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIY  253 (277)
Q Consensus       186 -----~------v-~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~  253 (277)
                           .      + .+..+  .+..++.++.++.++.||..+++.+......   .. .  .+...+..++.++.||.++
T Consensus       221 ~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~---~~-~--~p~~~~~~vyv~~~~G~l~  292 (377)
T TIGR03300       221 PKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDAS---SY-Q--GPAVDDNRLYVTDADGVVV  292 (377)
T ss_pred             CCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeeccC---Cc-c--CceEeCCEEEEECCCCeEE
Confidence                 0      0 11112  2457888889999999999999887665421   11 1  1222456777788999999


Q ss_pred             EEECcCccceeee
Q 023772          254 FWDLVDASVVAKF  266 (277)
Q Consensus       254 iwd~~~~~~~~~~  266 (277)
                      .+|..+|+.+-+.
T Consensus       293 ~~d~~tG~~~W~~  305 (377)
T TIGR03300       293 ALDRRSGSELWKN  305 (377)
T ss_pred             EEECCCCcEEEcc
Confidence            9999999877544

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.23  E-value=4.1e-11  Score=99.72  Aligned_cols=237  Identities=17%  Similarity=0.259  Sum_probs=151.5

Q ss_pred             ceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCC-------CeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcE
Q 023772           12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHR-------GIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQI   84 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v   84 (277)
                      ..+.||...|+.++--.+.+-++++|+|.++++|.++.       ..+..++..|..+|.++.|..+.+++++  .|+-+
T Consensus       729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~gi  806 (1034)
T KOG4190|consen  729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGI  806 (1034)
T ss_pred             ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcc
Confidence            34679999999988877888889999999999998754       2467788999999999999998888865  58999


Q ss_pred             EEEECCCCceeEEeec--ccCceeEEEEecC--CCE-EEEEeCCCcEEEEeCccCCCcceEeecccc-----CcEEEEEe
Q 023772           85 FYWDVSTGRVIRKFRG--HESEVNAVKFNEY--SSV-VVSAGYDQSLRAWDCRSHSTEPIQIIDSFQ-----DSVMSVCL  154 (277)
Q Consensus        85 ~~wd~~~~~~~~~~~~--h~~~v~~i~~~~~--~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~  154 (277)
                      .+||.=-++++.....  ..+.+..+...++  ... ++-|+...+|+++|.+.............+     ..+.++..
T Consensus       807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~  886 (1034)
T KOG4190|consen  807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD  886 (1034)
T ss_pred             eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence            9999876665543321  1233333444443  333 444588999999998864322111111111     12445556


Q ss_pred             cCCeEEEeecCCcEEEEEccCCcccccCC--CCCeeEEEEeCCCCEEEEEecCCeEEE-EECCCCceEEEEeccccceee
Q 023772          155 TKTEIIGGSVDGTVRTFDIRVGRELSDDL--GQPVNCISMSNDGNCILASCLDSTLRL-LDRSTGELLQEYKGHICKSFK  231 (277)
Q Consensus       155 ~~~~~~~g~~d~~i~i~d~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~d~~i~~-wd~~~~~~~~~~~~~~~~~~~  231 (277)
                      .++.++.+-.+|+|.+.|.|+++.+..-.  .-....++ .|..+.|+....|.++-+ |-...+......+.-..    
T Consensus       887 ~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppe----  961 (1034)
T KOG4190|consen  887 KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPE----  961 (1034)
T ss_pred             CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCc----
Confidence            67779999999999999999988654211  11111111 345566777778888888 87665532222111100    


Q ss_pred             eeeEecCCCceEEeecCCCeEEEE
Q 023772          232 TDCCLTNSDAHVTGGSEDGYIYFW  255 (277)
Q Consensus       232 ~~~~~~~~~~~l~sgs~d~~i~iw  255 (277)
                      ....+..-|.-++++...+.+.+|
T Consensus       962 pahflqsvgpSLV~a~~Gn~lgVY  985 (1034)
T KOG4190|consen  962 PAHFLQSVGPSLVTAQNGNILGVY  985 (1034)
T ss_pred             chhhhhccCceeEEeccCcEEEEE
Confidence            001112234456666656666666

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=1.5e-08  Score=86.59  Aligned_cols=208  Identities=14%  Similarity=0.033  Sum_probs=120.1

Q ss_pred             ceeeccCCcEEEEEEeCCCCE--E-EEEeCCCc--EEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeC-----C
Q 023772           12 NVLKGHEGAVLAARFNGDGNY--C-LSCGKDRT--IRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGG-----D   81 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~~~~~--l-~s~s~d~~--v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~-----d   81 (277)
                      ..|......+..=+|+|||+.  + ++...++.  |.+.++..++..... ...+......|+|++++|+..+.     |
T Consensus       178 ~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~~~g~~~~p~wSPDG~~Laf~s~~~g~~d  256 (428)
T PRK01029        178 RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-ALQGNQLMPTFSPRKKLLAFISDRYGNPD  256 (428)
T ss_pred             eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee-cCCCCccceEECCCCCEEEEEECCCCCcc
Confidence            334445566777899999974  2 24444444  555577766543322 23445567899999998876543     2


Q ss_pred             CcEEEEECCCC---ceeEEeecccCceeEEEEecCCCEEEEEe-CCCcEEEEeCcc--CCCcceEeeccccCcE--EEEE
Q 023772           82 RQIFYWDVSTG---RVIRKFRGHESEVNAVKFNEYSSVVVSAG-YDQSLRAWDCRS--HSTEPIQIIDSFQDSV--MSVC  153 (277)
Q Consensus        82 ~~v~~wd~~~~---~~~~~~~~h~~~v~~i~~~~~~~~l~s~~-~d~~i~iwd~~~--~~~~~~~~~~~~~~~~--~~~~  153 (277)
                      -.+..|++..+   +..+....+........|+||++.|+..+ .+|...+|....  .... ...+......+  ..+.
T Consensus       257 i~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~-~~~lt~~~~~~~~p~wS  335 (428)
T PRK01029        257 LFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQS-PRLLTKKYRNSSCPAWS  335 (428)
T ss_pred             eeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccc-eEEeccCCCCccceeEC
Confidence            23455777653   33322222223445679999999777655 467666664321  1111 12122222222  3344


Q ss_pred             ecCCeEEEeecC---CcEEEEEccCCcccccC-CCCCeeEEEEeCCCCEEEEEec---CCeEEEEECCCCceEEE
Q 023772          154 LTKTEIIGGSVD---GTVRTFDIRVGRELSDD-LGQPVNCISMSNDGNCILASCL---DSTLRLLDRSTGELLQE  221 (277)
Q Consensus       154 ~~~~~~~~g~~d---~~i~i~d~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~---d~~i~~wd~~~~~~~~~  221 (277)
                      ++++.++..+.+   ..|.+||+..++..... ....+....|+|+|++|+..+.   +..|+++|+..++....
T Consensus       336 PDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~L  410 (428)
T PRK01029        336 PDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKI  410 (428)
T ss_pred             CCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence            455556544332   36889999877543222 1235677899999998875443   35688999987765443

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.19  E-value=2.5e-09  Score=82.53  Aligned_cols=135  Identities=17%  Similarity=0.244  Sum_probs=102.6

Q ss_pred             EEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEE--EEeccCccEEEEEEcCCC-CEEEEEeCCCcEEEEECC-CCceeE
Q 023772           21 VLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIK--TYKSHGREVRDVHVTADN-SKLISCGGDRQIFYWDVS-TGRVIR   96 (277)
Q Consensus        21 V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~--~~~~h~~~v~~~~~~~~~-~~l~t~s~d~~v~~wd~~-~~~~~~   96 (277)
                      -.++.|++.+..+++.-.+|.+.+-+.......+  ..+.|..+.+-++|+..+ +.+++||.|+.+.-||+. .++.+.
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~  203 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW  203 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence            3567889999999999999999966544443333  788999999999998644 578999999999999998 445554


Q ss_pred             E-eecccCceeEEEEec-CCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC
Q 023772           97 K-FRGHESEVNAVKFNE-YSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT  157 (277)
Q Consensus        97 ~-~~~h~~~v~~i~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (277)
                      + -+-|...|.+|.-+| +...++||++|-.|++||.|+.. +++.. ....+.|..+...|.
T Consensus       204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~-kPl~~-~~v~GGVWRi~~~p~  264 (339)
T KOG0280|consen  204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG-KPLFK-AKVGGGVWRIKHHPE  264 (339)
T ss_pred             ecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc-Ccccc-CccccceEEEEecch
Confidence            4 566889999998875 57799999999999999998542 22221 223466777776653

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.15  E-value=3.7e-09  Score=83.30  Aligned_cols=210  Identities=13%  Similarity=0.250  Sum_probs=133.3

Q ss_pred             CccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----eeEEeeccc------------CceeEEEEecCCC--EEEEE
Q 023772           60 GREVRDVHVTADNSKLISCGGDRQIFYWDVSTGR-----VIRKFRGHE------------SEVNAVKFNEYSS--VVVSA  120 (277)
Q Consensus        60 ~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~-----~~~~~~~h~------------~~v~~i~~~~~~~--~l~s~  120 (277)
                      ...|.++.|...|.+|+||..+|.|-++.-+...     ....++.|.            ..|+.+.|.++++  .++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            3568899999999999999999999999765332     233444443            4578888887654  57777


Q ss_pred             eCCCcEEEEeCccCCCcc------------------eEeec----------------cccCcEEEEEecCCe-EEEeecC
Q 023772          121 GYDQSLRAWDCRSHSTEP------------------IQIID----------------SFQDSVMSVCLTKTE-IIGGSVD  165 (277)
Q Consensus       121 ~~d~~i~iwd~~~~~~~~------------------~~~~~----------------~~~~~~~~~~~~~~~-~~~g~~d  165 (277)
                      +.|.+|++|.++......                  +....                .|.-.+.+++++.+. ....+.|
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADd  184 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADD  184 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccc
Confidence            899999999876432111                  00111                111223334443322 3334456


Q ss_pred             CcEEEEEccCCcc---cccCC-------CCCeeEEEEeCCC-CEEEEEecCCeEEEEECCCCceEEE----Ee---cc--
Q 023772          166 GTVRTFDIRVGRE---LSDDL-------GQPVNCISMSNDG-NCILASCLDSTLRLLDRSTGELLQE----YK---GH--  225 (277)
Q Consensus       166 ~~i~i~d~~~~~~---~~~~~-------~~~v~~~~~s~~~-~~l~~~~~d~~i~~wd~~~~~~~~~----~~---~~--  225 (277)
                      =.|.+|+++....   +....       ..-|++..|+|.. +.++.++..|+||+-|++...+-..    |.   ..  
T Consensus       185 LRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~  264 (433)
T KOG1354|consen  185 LRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSS  264 (433)
T ss_pred             eeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcc
Confidence            6788899874321   11111       1347888999964 6778889999999999985422111    10   00  


Q ss_pred             -----ccceeeeeeEecCCCceEEeecCCCeEEEEEC-cCccceeeeccCc
Q 023772          226 -----ICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDL-VDASVVAKFKAHS  270 (277)
Q Consensus       226 -----~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~-~~~~~~~~~~~h~  270 (277)
                           .....+.+..|++.|+|+++-.. -+|++||+ .+.+.+..++-|.
T Consensus       265 rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~  314 (433)
T KOG1354|consen  265 RSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHE  314 (433)
T ss_pred             hhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehH
Confidence                 11122345678899999997542 58999999 5677888877764

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.14  E-value=3.4e-10  Score=89.07  Aligned_cols=156  Identities=17%  Similarity=0.269  Sum_probs=103.8

Q ss_pred             EEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec
Q 023772           76 ISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT  155 (277)
Q Consensus        76 ~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  155 (277)
                      ++.+.+..|-+-|+++|.. ..|. ..+.|.++.|...+++++.|..+|.|...|++....          +..      
T Consensus       228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnq----------G~~------  289 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQ----------GNG------  289 (425)
T ss_pred             ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeeccc----------CCC------
Confidence            3444555555656555432 1222 445566666666566666666666666666654210          000      


Q ss_pred             CCeEEEeecCCcEEEEEccCCcccccCCCCCeeEEEEeC-CCCEEEEEecCCeEEEEECCCCce---EEEEeccccceee
Q 023772          156 KTEIIGGSVDGTVRTFDIRVGRELSDDLGQPVNCISMSN-DGNCILASCLDSTLRLLDRSTGEL---LQEYKGHICKSFK  231 (277)
Q Consensus       156 ~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~~  231 (277)
                               ...           ....++..|+++..-. ++++|.+++.+|+|++||.+.-++   ++.|.||.+....
T Consensus       290 ---------~~a-----------~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~  349 (425)
T KOG2695|consen  290 ---------WCA-----------QRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAY  349 (425)
T ss_pred             ---------cce-----------EEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccc
Confidence                     000           1113455566664333 678899999999999999988777   9999999876666


Q ss_pred             eeeEecCCCceEEeecCCCeEEEEECcCccceeeeccC
Q 023772          232 TDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAH  269 (277)
Q Consensus       232 ~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h  269 (277)
                      ...-+.+.+..+++++.|...|||.++.|.+..+++-.
T Consensus       350 l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~  387 (425)
T KOG2695|consen  350 LPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP  387 (425)
T ss_pred             cccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence            66667788889999999999999999999998888743

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.10  E-value=8e-10  Score=86.54  Aligned_cols=180  Identities=12%  Similarity=0.187  Sum_probs=122.0

Q ss_pred             CcEEEEEEeCCCCEEE-EEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeE
Q 023772           19 GAVLAARFNGDGNYCL-SCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKL-ISCGGDRQIFYWDVSTGRVIR   96 (277)
Q Consensus        19 ~~V~~~~~~~~~~~l~-s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~t~s~d~~v~~wd~~~~~~~~   96 (277)
                      +.|.-+.|..|..+++ ....|+.|.+|++...+-...+...+.++.++.|+|+++.| .+...|-+|.+|.+.+.+...
T Consensus        49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~  128 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL  128 (447)
T ss_pred             HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence            5566788888887666 56889999999999888888888888999999999999655 566779999999998876542


Q ss_pred             EeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccC----CCcceEeecc---ccCcEEEEEecCCeEEEeecCCcEE
Q 023772           97 KFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSH----STEPIQIIDS---FQDSVMSVCLTKTEIIGGSVDGTVR  169 (277)
Q Consensus        97 ~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~d~~i~  169 (277)
                       ++.-+..+..++|++++++.+.++.-      |...-    .......+..   .......+.++|+       +.-+.
T Consensus       129 -~~~pK~~~kg~~f~~dg~f~ai~sRr------DCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPd-------g~~la  194 (447)
T KOG4497|consen  129 -LPHPKTNVKGYAFHPDGQFCAILSRR------DCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPD-------GNWLA  194 (447)
T ss_pred             -ecccccCceeEEECCCCceeeeeecc------cHHHHHHHHhhHHHHHHHhcCCCcccccCceECCC-------CcEEE
Confidence             22224456889999999998887652      22110    0000000110   0111233444443       23355


Q ss_pred             EEEccCCcccccC-CCCCeeEEEEeCCCCEEEEEecCCeEEEEE
Q 023772          170 TFDIRVGRELSDD-LGQPVNCISMSNDGNCILASCLDSTLRLLD  212 (277)
Q Consensus       170 i~d~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd  212 (277)
                      +||-.....+... .+-.+..++|+|.+++|+.|+.|+.+|+-|
T Consensus       195 Vwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvln  238 (447)
T KOG4497|consen  195 VWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLN  238 (447)
T ss_pred             EecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhc
Confidence            6775433332222 234688899999999999999999999866

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.07  E-value=3.6e-07  Score=78.16  Aligned_cols=220  Identities=12%  Similarity=0.082  Sum_probs=124.1

Q ss_pred             cEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCE--E-EEEeCCC--cEEEEECCCCceeEEeecccCceeEEEEecCCC
Q 023772           41 TIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSK--L-ISCGGDR--QIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSS  115 (277)
Q Consensus        41 ~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l-~t~s~d~--~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~  115 (277)
                      .|.+.|...+. .+.+........+=.|+|+++.  + ++...++  .|.+.++.+++..+ +...........|+||++
T Consensus       166 ~l~~~d~dG~~-~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~  243 (428)
T PRK01029        166 ELWSVDYDGQN-LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKK  243 (428)
T ss_pred             eEEEEcCCCCC-ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCC
Confidence            45555654433 2334334556677799999875  3 2443343  57777888775432 222334445678999998


Q ss_pred             EEEEEeC-----CCcEEEEeCccCC-CcceEeeccccCc--EEEEEecCCeEEEee-cCCcEEEEEc--cC-Ccc--ccc
Q 023772          116 VVVSAGY-----DQSLRAWDCRSHS-TEPIQIIDSFQDS--VMSVCLTKTEIIGGS-VDGTVRTFDI--RV-GRE--LSD  181 (277)
Q Consensus       116 ~l~s~~~-----d~~i~iwd~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~g~-~d~~i~i~d~--~~-~~~--~~~  181 (277)
                      .|+..+.     |..+..|++.... .............  -..+.+++..++..+ .+|...+|.+  .. +..  ...
T Consensus       244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt  323 (428)
T PRK01029        244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT  323 (428)
T ss_pred             EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec
Confidence            8776553     2234446655321 1222333222112  223444555566444 4565556543  21 111  111


Q ss_pred             CCCCCeeEEEEeCCCCEEEEEecC---CeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEe-ec--CCCeEEEE
Q 023772          182 DLGQPVNCISMSNDGNCILASCLD---STLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTG-GS--EDGYIYFW  255 (277)
Q Consensus       182 ~~~~~v~~~~~s~~~~~l~~~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-gs--~d~~i~iw  255 (277)
                      .....+....|+|+|++|+..+.+   ..|++||+.+++... +....  .......++|+|++|+. +.  ....|++|
T Consensus       324 ~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~--~~~~~p~wSpDG~~L~f~~~~~g~~~L~~v  400 (428)
T PRK01029        324 KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSP--ENKESPSWAIDSLHLVYSAGNSNESELYLI  400 (428)
T ss_pred             cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCC--CCccceEECCCCCEEEEEECCCCCceEEEE
Confidence            223356678999999988876543   369999998887643 33221  11234568899988764 32  24579999


Q ss_pred             ECcCccceee
Q 023772          256 DLVDASVVAK  265 (277)
Q Consensus       256 d~~~~~~~~~  265 (277)
                      |+..++....
T Consensus       401 dl~~g~~~~L  410 (428)
T PRK01029        401 SLITKKTRKI  410 (428)
T ss_pred             ECCCCCEEEe
Confidence            9988765433

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.07  E-value=2.1e-07  Score=87.60  Aligned_cols=196  Identities=15%  Similarity=0.225  Sum_probs=126.7

Q ss_pred             EEEEEEeCCCCEEEEE-eCCCcEEEEcCCCCeeEEEEecc-----------------CccEEEEEEcC-CCCEEEEEeCC
Q 023772           21 VLAARFNGDGNYCLSC-GKDRTIRLWNPHRGIHIKTYKSH-----------------GREVRDVHVTA-DNSKLISCGGD   81 (277)
Q Consensus        21 V~~~~~~~~~~~l~s~-s~d~~v~iwd~~~~~~~~~~~~h-----------------~~~v~~~~~~~-~~~~l~t~s~d   81 (277)
                      -..++++++++.|+.+ ...+.|+++|..++. +.++.+-                 -...+.++++| ++..+++.+.+
T Consensus       626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~  704 (1057)
T PLN02919        626 PQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ  704 (1057)
T ss_pred             CcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence            4678888888766554 445789999987764 3333210                 11346799999 45566777788


Q ss_pred             CcEEEEECCCCceeEEeecc---------------cCceeEEEEecCCC-EEEEEeCCCcEEEEeCccCCCcceE-----
Q 023772           82 RQIFYWDVSTGRVIRKFRGH---------------ESEVNAVKFNEYSS-VVVSAGYDQSLRAWDCRSHSTEPIQ-----  140 (277)
Q Consensus        82 ~~v~~wd~~~~~~~~~~~~h---------------~~~v~~i~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~-----  140 (277)
                      ++|++||..++... .+.+.               -...+.++++|+++ ++++-+.++.|++||+.+.......     
T Consensus       705 ~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~  783 (1057)
T PLN02919        705 HQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT  783 (1057)
T ss_pred             CeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc
Confidence            99999999876542 22111               12345799999987 5666677899999998753211000     


Q ss_pred             ------eeccc--------cCcEEEEEec--CCeEEEeecCCcEEEEEccCCccccc-C--------------CCCCeeE
Q 023772          141 ------IIDSF--------QDSVMSVCLT--KTEIIGGSVDGTVRTFDIRVGRELSD-D--------------LGQPVNC  189 (277)
Q Consensus       141 ------~~~~~--------~~~~~~~~~~--~~~~~~g~~d~~i~i~d~~~~~~~~~-~--------------~~~~v~~  189 (277)
                            .+...        ......+.++  ++.+++-..++.|++||..++..... .              .-.....
T Consensus       784 ~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~G  863 (1057)
T PLN02919        784 FSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAG  863 (1057)
T ss_pred             cCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceE
Confidence                  00000        0011233333  44566777889999999876543210 0              0124678


Q ss_pred             EEEeCCCCEEEEEecCCeEEEEECCCCce
Q 023772          190 ISMSNDGNCILASCLDSTLRLLDRSTGEL  218 (277)
Q Consensus       190 ~~~s~~~~~l~~~~~d~~i~~wd~~~~~~  218 (277)
                      ++++++|+.+++-+.++.|++||+.+++.
T Consensus       864 Iavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        864 LALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             EEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            99999999889888999999999988765

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.06  E-value=4.9e-09  Score=84.04  Aligned_cols=155  Identities=15%  Similarity=0.195  Sum_probs=102.3

Q ss_pred             EEEEeCCCCEEEEEeCCCcEEEEcCCCC----eeEEEEeccCccEEEEEEcCCCCEE---EEEeCCCcEEEEECCCCcee
Q 023772           23 AARFNGDGNYCLSCGKDRTIRLWNPHRG----IHIKTYKSHGREVRDVHVTADNSKL---ISCGGDRQIFYWDVSTGRVI   95 (277)
Q Consensus        23 ~~~~~~~~~~l~s~s~d~~v~iwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l---~t~s~d~~v~~wd~~~~~~~   95 (277)
                      .+..++++++++.+-.+....+++....    ++...+. -....+++.+..+....   ..++....+.+|....+.+ 
T Consensus        67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~-  144 (390)
T KOG3914|consen   67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC-  144 (390)
T ss_pred             ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccCc-
Confidence            3445677788887766666555553322    2222222 12233444444444433   3445667778887766443 


Q ss_pred             EEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCe-EEEeecCCcEEEEEcc
Q 023772           96 RKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE-IIGGSVDGTVRTFDIR  174 (277)
Q Consensus        96 ~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~d~~i~i~d~~  174 (277)
                      ....+|-+.+.+++++||++.++|+..|..|++-........ -...-+|...|..++..+++ +++|+.|+++++||++
T Consensus       145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~I-esfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~  223 (390)
T KOG3914|consen  145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVI-ESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDIT  223 (390)
T ss_pred             chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccch-hhhccccHhheeeeeeccCceeeecCCCCcEEEEecc
Confidence            356689999999999999999999999999998765322111 01123567778888877666 6999999999999999


Q ss_pred             CCcccc
Q 023772          175 VGRELS  180 (277)
Q Consensus       175 ~~~~~~  180 (277)
                      +++.+.
T Consensus       224 sgk~L~  229 (390)
T KOG3914|consen  224 SGKLLD  229 (390)
T ss_pred             cCCccc
Confidence            998763

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.05  E-value=2e-06  Score=70.68  Aligned_cols=218  Identities=11%  Similarity=0.083  Sum_probs=134.7

Q ss_pred             CcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCceeEEeeccc-------
Q 023772           40 RTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGG----------DRQIFYWDVSTGRVIRKFRGHE-------  102 (277)
Q Consensus        40 ~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~----------d~~v~~wd~~~~~~~~~~~~h~-------  102 (277)
                      ++|.+.|..+++.+.++.....+-. + ++|+++.|+.+..          +..|.+||+.+.+.+.++.--.       
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            8999999999999998886544443 5 9999998877655          7899999999999988776321       


Q ss_pred             CceeEEEEecCCCEEEEEe-C-CCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCCcEEEEEccCC-c--
Q 023772          103 SEVNAVKFNEYSSVVVSAG-Y-DQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVG-R--  177 (277)
Q Consensus       103 ~~v~~i~~~~~~~~l~s~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~--  177 (277)
                      ..-...+++|++++++... . +..|-+.|+.+....  ..+.- ++...-+.........-..||......+... +  
T Consensus       105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv--~ei~v-p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~  181 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFV--RMMDV-PDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPK  181 (352)
T ss_pred             CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEE--EEEeC-CCCcEEEEecCCccEEEeecCceEEEEecCCCceE
Confidence            2234688999999888765 3 789999998765432  11211 2222222222222333334444443322211 0  


Q ss_pred             ----ccccC-----CCCCeeEEEEeC-CCCEEEEEecCCeEEEEECCCC-----ceEEEEecccc-----ceeeeeeEec
Q 023772          178 ----ELSDD-----LGQPVNCISMSN-DGNCILASCLDSTLRLLDRSTG-----ELLQEYKGHIC-----KSFKTDCCLT  237 (277)
Q Consensus       178 ----~~~~~-----~~~~v~~~~~s~-~~~~l~~~~~d~~i~~wd~~~~-----~~~~~~~~~~~-----~~~~~~~~~~  237 (277)
                          .+...     ...+    .|.+ +|+++..+.+ |+|++.|+...     +.+..+.....     ..-..-.+++
T Consensus       182 ~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~  256 (352)
T TIGR02658       182 IKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYH  256 (352)
T ss_pred             EeeeeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEc
Confidence                11000     0112    4455 8888877766 99999996432     22222221100     1111125678


Q ss_pred             CCCceEEeec----------CCCeEEEEECcCccceeeec
Q 023772          238 NSDAHVTGGS----------EDGYIYFWDLVDASVVAKFK  267 (277)
Q Consensus       238 ~~~~~l~sgs----------~d~~i~iwd~~~~~~~~~~~  267 (277)
                      ++++.+....          ..+.|.++|..+++.+.++.
T Consensus       257 ~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~  296 (352)
T TIGR02658       257 RARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE  296 (352)
T ss_pred             CCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe
Confidence            8888777632          22589999999999999887

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.04  E-value=2e-07  Score=79.08  Aligned_cols=230  Identities=17%  Similarity=0.116  Sum_probs=140.0

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCce----
Q 023772           30 GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEV----  105 (277)
Q Consensus        30 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v----  105 (277)
                      +..++.++.++.+.-+|..+|+.+-..+... .+.+--.. .+..++.+..++.+..+|.++|+.+.++.......    
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~  197 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG  197 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence            3456667788999999999998776665432 22221111 24567777889999999999999987765321110    


Q ss_pred             -eEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeecccc---------CcEEEEEecCCeEEEeecCCcEEEEEccC
Q 023772          106 -NAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQ---------DSVMSVCLTKTEIIGGSVDGTVRTFDIRV  175 (277)
Q Consensus       106 -~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~d~~i~i~d~~~  175 (277)
                       .+-..  .+..++.++.+|.+...|..++............         ............++.++.++.+..+|..+
T Consensus       198 ~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~t  275 (394)
T PRK11138        198 ESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRS  275 (394)
T ss_pred             CCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCC
Confidence             00111  1235666778888888887765432221111000         00011112345677778899999999988


Q ss_pred             CcccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEE
Q 023772          176 GRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFW  255 (277)
Q Consensus       176 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iw  255 (277)
                      ++.+-...-.....+..  .+..+..++.++.+..+|..+++.+.......... .....+  .+.+++.++.||.++..
T Consensus       276 G~~~W~~~~~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~-~~sp~v--~~g~l~v~~~~G~l~~l  350 (394)
T PRK11138        276 GQIVWKREYGSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRL-LTAPVL--YNGYLVVGDSEGYLHWI  350 (394)
T ss_pred             CCEEEeecCCCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCc-ccCCEE--ECCEEEEEeCCCEEEEE
Confidence            87543321111112222  35567788899999999999998765443211111 111111  25567788999999999


Q ss_pred             ECcCccceeeecc
Q 023772          256 DLVDASVVAKFKA  268 (277)
Q Consensus       256 d~~~~~~~~~~~~  268 (277)
                      |..+|+.+.+.+-
T Consensus       351 d~~tG~~~~~~~~  363 (394)
T PRK11138        351 NREDGRFVAQQKV  363 (394)
T ss_pred             ECCCCCEEEEEEc
Confidence            9999999877763

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=2.7e-09  Score=86.84  Aligned_cols=208  Identities=14%  Similarity=0.100  Sum_probs=150.2

Q ss_pred             cCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC---CceeEEeecccCceeEEEEecCCCEEEEEeC-CCcEEEEeCccC
Q 023772           59 HGREVRDVHVTADNSKLISCGGDRQIFYWDVST---GRVIRKFRGHESEVNAVKFNEYSSVVVSAGY-DQSLRAWDCRSH  134 (277)
Q Consensus        59 h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~---~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-d~~i~iwd~~~~  134 (277)
                      |...|+.+... .-+++++++.||.+|.|--..   -+.+..+..|...|.+++.+-++.++.|.+. |..++++|+.+.
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            66666666554 457899999999999997543   1345667889999999999999999999777 999999999875


Q ss_pred             CCcceEeeccccCcEEEEEecCC---eEEE-eecCCcEEEEEccCCccc----ccCCCCCeeEEEEeCCCCEEEEEecCC
Q 023772          135 STEPIQIIDSFQDSVMSVCLTKT---EIIG-GSVDGTVRTFDIRVGREL----SDDLGQPVNCISMSNDGNCILASCLDS  206 (277)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~-g~~d~~i~i~d~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~d~  206 (277)
                      .......+...+..+..+...+.   .++. ...++.+.++|-+...+.    ...+-.+|.++.+.+.+..+++....|
T Consensus        87 DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~g  166 (558)
T KOG0882|consen   87 DMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISG  166 (558)
T ss_pred             chhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccc
Confidence            54433333334444433332221   2333 345688999997755422    224567999999999999898888899


Q ss_pred             eEEEEECCC------CceEEEEec-------cccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeec
Q 023772          207 TLRLLDRST------GELLQEYKG-------HICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFK  267 (277)
Q Consensus       207 ~i~~wd~~~------~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~  267 (277)
                      .|.-|....      .++...++.       -.++....+..++|++..+++-+.|..|++++.++|++++.+.
T Consensus       167 mVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiD  240 (558)
T KOG0882|consen  167 MVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEID  240 (558)
T ss_pred             eeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhh
Confidence            999999862      222222221       1334556778899999999998899999999999999887764

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.03  E-value=6.2e-09  Score=83.50  Aligned_cols=160  Identities=14%  Similarity=0.177  Sum_probs=97.6

Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEeCccCCC--cceEee--ccccCcEEEEEecCCeEEEe---ecCCcEEEEEccCCccc
Q 023772          107 AVKFNEYSSVVVSAGYDQSLRAWDCRSHST--EPIQII--DSFQDSVMSVCLTKTEIIGG---SVDGTVRTFDIRVGREL  179 (277)
Q Consensus       107 ~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~g---~~d~~i~i~d~~~~~~~  179 (277)
                      .+..++.+++++.+..+....+++.+....  +.....  ......+..+.. ......+   +....+.+|....+...
T Consensus        67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~-~~sv~v~dkagD~~~~di~s~~~~~~~  145 (390)
T KOG3914|consen   67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIRE-DTSVLVADKAGDVYSFDILSADSGRCE  145 (390)
T ss_pred             ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeec-cceEEEEeecCCceeeeeecccccCcc
Confidence            345566677777777777766666654322  111110  111111222222 2222222   22334445554433222


Q ss_pred             c-cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEe-ccccceeeeeeEecCCCceEEeecCCCeEEEEEC
Q 023772          180 S-DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYK-GHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDL  257 (277)
Q Consensus       180 ~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~  257 (277)
                      . ..+-..+..++|+||+++|+++..|..||+-.+..-..+..|. ||...+  -..+..+ +..|++||-|+++++||+
T Consensus       146 ~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFV--S~isl~~-~~~LlS~sGD~tlr~Wd~  222 (390)
T KOG3914|consen  146 PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFV--STISLTD-NYLLLSGSGDKTLRLWDI  222 (390)
T ss_pred             hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhhe--eeeeecc-CceeeecCCCCcEEEEec
Confidence            1 2334578899999999999999999999998887666676665 576443  3333444 456899999999999999


Q ss_pred             cCccceeeeccCc
Q 023772          258 VDASVVAKFKAHS  270 (277)
Q Consensus       258 ~~~~~~~~~~~h~  270 (277)
                      .+|++++.+..-+
T Consensus       223 ~sgk~L~t~dl~s  235 (390)
T KOG3914|consen  223 TSGKLLDTCDLSS  235 (390)
T ss_pred             ccCCcccccchhH
Confidence            9999998776543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.03  E-value=1.4e-07  Score=74.26  Aligned_cols=191  Identities=16%  Similarity=0.155  Sum_probs=121.3

Q ss_pred             CCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe-ecccC---
Q 023772           28 GDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKF-RGHES---  103 (277)
Q Consensus        28 ~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~-~~h~~---  103 (277)
                      +++..++.++.++.|..||..+|+.+-.+.. ..++.... ...+..++.+..++.+..+|.++|+.+.+. .....   
T Consensus        34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~  111 (238)
T PF13360_consen   34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG  111 (238)
T ss_dssp             EETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred             EeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeeccccccccc
Confidence            3566778889999999999999998877765 22222222 234566777778889999999999998874 32211   


Q ss_pred             ceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeecccc---------CcEEEEEecCCeEEEeecCCcEEEEEcc
Q 023772          104 EVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQ---------DSVMSVCLTKTEIIGGSVDGTVRTFDIR  174 (277)
Q Consensus       104 ~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~d~~i~i~d~~  174 (277)
                      ..........+..++.+..++.+..+|++++............         .....+......+..+..++.+..+|+.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~  191 (238)
T PF13360_consen  112 VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLA  191 (238)
T ss_dssp             TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETT
T ss_pred             cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECC
Confidence            1122233333778888888999999998876432222221111         1112333344467777777753334999


Q ss_pred             CCcccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEE
Q 023772          175 VGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQE  221 (277)
Q Consensus       175 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~  221 (277)
                      +++............ .....+..++.++.++.+..||+++|+.+..
T Consensus       192 tg~~~w~~~~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  192 TGEKLWSKPISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             TTEEEEEECSS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred             CCCEEEEecCCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence            887443222222222 1456777888888999999999999988654

...

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.00  E-value=8.6e-07  Score=75.47  Aligned_cols=191  Identities=15%  Similarity=0.068  Sum_probs=113.6

Q ss_pred             CcEEEEEEeCCCCE-EEEEeC---CCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEE-EeCC--CcEEEEECCC
Q 023772           19 GAVLAARFNGDGNY-CLSCGK---DRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLIS-CGGD--RQIFYWDVST   91 (277)
Q Consensus        19 ~~V~~~~~~~~~~~-l~s~s~---d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t-~s~d--~~v~~wd~~~   91 (277)
                      +....-.|+|||+. ++..+.   +..|.++|+.+++...... ..+......|+|+++.|+- .+.+  ..|.++|+.+
T Consensus       188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~  266 (419)
T PRK04043        188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT  266 (419)
T ss_pred             CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence            37788999999984 554333   3568888998886554443 4455667889999987754 4333  4678888877


Q ss_pred             CceeEEeecccCceeEEEEecCCCEEEEEeC-CC--cEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecC---
Q 023772           92 GRVIRKFRGHESEVNAVKFNEYSSVVVSAGY-DQ--SLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVD---  165 (277)
Q Consensus        92 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d---  165 (277)
                      ++.. .+..+........|+||++.|+-.+. .+  .|.+.|+......++. ....  ....+++++..++.....   
T Consensus       267 g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt-~~g~--~~~~~SPDG~~Ia~~~~~~~~  342 (419)
T PRK04043        267 KTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV-FHGK--NNSSVSTYKNYIVYSSRETNN  342 (419)
T ss_pred             CcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc-cCCC--cCceECCCCCEEEEEEcCCCc
Confidence            7643 34434333344679999987666553 33  4666676554332221 1111  123455566665543332   


Q ss_pred             ------CcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecCC---eEEEEECC
Q 023772          166 ------GTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDS---TLRLLDRS  214 (277)
Q Consensus       166 ------~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~---~i~~wd~~  214 (277)
                            ..|.+.|+..+...............|+|||+.|+....++   .+.+.++.
T Consensus       343 ~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~  400 (419)
T PRK04043        343 EFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN  400 (419)
T ss_pred             ccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence                  25777787766432221122333578999999876655432   35566664

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.00  E-value=2.3e-09  Score=58.82  Aligned_cols=39  Identities=26%  Similarity=0.520  Sum_probs=37.0

Q ss_pred             CeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023772           50 GIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWD   88 (277)
Q Consensus        50 ~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd   88 (277)
                      ++++.++++|..+|++++|+|++.+|++++.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            367889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.99  E-value=1.9e-08  Score=86.74  Aligned_cols=238  Identities=19%  Similarity=0.285  Sum_probs=153.6

Q ss_pred             EEEEEEeCCC---CEEEEEeCCCcEEEEcCCC---CeeEEEEeccCccEEEEEEcCCCC-EEEEEeCCCcEEEEECCCC-
Q 023772           21 VLAARFNGDG---NYCLSCGKDRTIRLWNPHR---GIHIKTYKSHGREVRDVHVTADNS-KLISCGGDRQIFYWDVSTG-   92 (277)
Q Consensus        21 V~~~~~~~~~---~~l~s~s~d~~v~iwd~~~---~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~d~~v~~wd~~~~-   92 (277)
                      |-.+.|++..   .++++.+. ....+|++..   ...-..+.+|...|+.+.|.+.+. .+++++.|..+..||+.+- 
T Consensus        70 vad~qws~h~a~~~wiVsts~-qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~  148 (1081)
T KOG0309|consen   70 VADVQWSPHPAKPYWIVSTSN-QKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH  148 (1081)
T ss_pred             hcceecccCCCCceeEEecCc-chhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC
Confidence            6678888743   35555554 5668898653   233456778999999999998765 6789999999999999864 


Q ss_pred             ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC---CeEEEeecCCcEE
Q 023772           93 RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK---TEIIGGSVDGTVR  169 (277)
Q Consensus        93 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~d~~i~  169 (277)
                      .++..+..-...-..++|+-....+...+....|++||++.+.. +......+...+..+.+..   ..+++.+.|++++
T Consensus       149 ~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~-pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvk  227 (1081)
T KOG0309|consen  149 RPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGST-PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVK  227 (1081)
T ss_pred             cceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCc-ceEEecccceeeehHHHhhhhhhhhcccCCCCcee
Confidence            34555544444556789987666666667788899999987643 3444445555666665543   3488999999999


Q ss_pred             EEEccCCccccc---CCCCCeeEEEEeCCCCE-----------EEEEecCCeEEEEECCC-CceEEEEeccccceeee--
Q 023772          170 TFDIRVGRELSD---DLGQPVNCISMSNDGNC-----------ILASCLDSTLRLLDRST-GELLQEYKGHICKSFKT--  232 (277)
Q Consensus       170 i~d~~~~~~~~~---~~~~~v~~~~~s~~~~~-----------l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~--  232 (277)
                      .||.....+...   ....++.--.+-|-|.-           +..---+.....|+..+ .+++..|.||...+.-.  
T Consensus       228 fw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlW  307 (1081)
T KOG0309|consen  228 FWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLW  307 (1081)
T ss_pred             eecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhh
Confidence            999875533221   22334544445553321           11111222334455543 46789999996432111  


Q ss_pred             ----eeEe--cCCCceEEeecCCCeEEEEECcCc
Q 023772          233 ----DCCL--TNSDAHVTGGSEDGYIYFWDLVDA  260 (277)
Q Consensus       233 ----~~~~--~~~~~~l~sgs~d~~i~iwd~~~~  260 (277)
                          .|.+  ...+.-|++-|.|..+|+|-+.+.
T Consensus       308 R~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~  341 (1081)
T KOG0309|consen  308 RKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ  341 (1081)
T ss_pred             hhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence                1111  122446999999999999998763

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.97  E-value=6.2e-06  Score=68.75  Aligned_cols=218  Identities=14%  Similarity=0.158  Sum_probs=134.2

Q ss_pred             CcEEEEcC--CCCeeE--EEEeccCccEEEEEEcCCCCEEEEEeC----CCcEEEEECCCC--c--eeEEeecccCceeE
Q 023772           40 RTIRLWNP--HRGIHI--KTYKSHGREVRDVHVTADNSKLISCGG----DRQIFYWDVSTG--R--VIRKFRGHESEVNA  107 (277)
Q Consensus        40 ~~v~iwd~--~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~t~s~----d~~v~~wd~~~~--~--~~~~~~~h~~~v~~  107 (277)
                      +.|.+|+.  .+++..  ..+. .......++++|++++|+++..    ++.|..|++...  +  .+.+..........
T Consensus        13 ~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~   91 (345)
T PF10282_consen   13 GGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCH   91 (345)
T ss_dssp             TEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEE
T ss_pred             CcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEE
Confidence            68888766  555432  2222 3456778999999999998876    578988887653  3  33334323344456


Q ss_pred             EEEecCCCEEEEEeC-CCcEEEEeCccCC-Ccce-Eeec----------cccCcEEEEEecC--CeEEEe-ecCCcEEEE
Q 023772          108 VKFNEYSSVVVSAGY-DQSLRAWDCRSHS-TEPI-QIID----------SFQDSVMSVCLTK--TEIIGG-SVDGTVRTF  171 (277)
Q Consensus       108 i~~~~~~~~l~s~~~-d~~i~iwd~~~~~-~~~~-~~~~----------~~~~~~~~~~~~~--~~~~~g-~~d~~i~i~  171 (277)
                      +++++++++++.+.. +|++.++++.... .... ....          ........+.+++  +.+++. -....|.+|
T Consensus        92 i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~  171 (345)
T PF10282_consen   92 IAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVY  171 (345)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred             EEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEE
Confidence            999999999998875 8999999987531 1111 1110          0112344555554  445543 334579999


Q ss_pred             EccCCcc-c------ccCCCCCeeEEEEeCCCCEEEEE-ecCCeEEEEECC--CCce--EEEEecc----ccceeeeeeE
Q 023772          172 DIRVGRE-L------SDDLGQPVNCISMSNDGNCILAS-CLDSTLRLLDRS--TGEL--LQEYKGH----ICKSFKTDCC  235 (277)
Q Consensus       172 d~~~~~~-~------~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~~wd~~--~~~~--~~~~~~~----~~~~~~~~~~  235 (277)
                      ++..... +      ....+.-.+.+.|+|+++++... ..++.|.+|++.  .++.  ++.....    ..........
T Consensus       172 ~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~  251 (345)
T PF10282_consen  172 DIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIA  251 (345)
T ss_dssp             EE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEE
T ss_pred             EEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEE
Confidence            9875431 1      22445678999999999987554 567789999987  4432  2333211    1111345567


Q ss_pred             ecCCCceEEee-cCCCeEEEEECc
Q 023772          236 LTNSDAHVTGG-SEDGYIYFWDLV  258 (277)
Q Consensus       236 ~~~~~~~l~sg-s~d~~i~iwd~~  258 (277)
                      ++|++++|.++ -.++.|-+|+++
T Consensus       252 ispdg~~lyvsnr~~~sI~vf~~d  275 (345)
T PF10282_consen  252 ISPDGRFLYVSNRGSNSISVFDLD  275 (345)
T ss_dssp             E-TTSSEEEEEECTTTEEEEEEEC
T ss_pred             EecCCCEEEEEeccCCEEEEEEEe
Confidence            89999987764 457789999993

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.97  E-value=2.7e-09  Score=58.59  Aligned_cols=39  Identities=33%  Similarity=0.788  Sum_probs=36.9

Q ss_pred             CceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEe
Q 023772           92 GRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWD  130 (277)
Q Consensus        92 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd  130 (277)
                      ++++.++.+|..+|++++|+|++++|++++.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            367889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.96  E-value=8.2e-09  Score=88.92  Aligned_cols=252  Identities=18%  Similarity=0.238  Sum_probs=152.8

Q ss_pred             cCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCC-CCeeEEEEeccCc--cEEEEEEcCCC---CEEEEEeCCCcEEEEECC
Q 023772           17 HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPH-RGIHIKTYKSHGR--EVRDVHVTADN---SKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        17 H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~-~~~~~~~~~~h~~--~v~~~~~~~~~---~~l~t~s~d~~v~~wd~~   90 (277)
                      -.+++..+..+|.|+-++.++.-|- .+-|+. .+.+.+.+. |..  .|-...|++..   ..+++.+.. ...+|++.
T Consensus        23 v~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~q-kaiiwnlA   99 (1081)
T KOG0309|consen   23 VDGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSNQ-KAIIWNLA   99 (1081)
T ss_pred             ecCcccceeeccccchhhhhhhcCe-EEEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCcc-hhhhhhhh
Confidence            3567888999999999999888654 455543 333333332 322  35566676543   235554443 45678875


Q ss_pred             C--Cc-eeEEeecccCceeEEEEecCC-CEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC--eEEEeec
Q 023772           91 T--GR-VIRKFRGHESEVNAVKFNEYS-SVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--EIIGGSV  164 (277)
Q Consensus        91 ~--~~-~~~~~~~h~~~v~~i~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~  164 (277)
                      .  .+ .-..+.+|...|+.+-|+++. ..+++++.|..+..||+++... ++............+.++..  .+++.+-
T Consensus       100 ~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~-p~ys~~~w~s~asqVkwnyk~p~vlassh  178 (1081)
T KOG0309|consen  100 KSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR-PFYSTSSWRSAASQVKWNYKDPNVLASSH  178 (1081)
T ss_pred             cCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc-ceeeeecccccCceeeecccCcchhhhcc
Confidence            3  22 334467899999999999874 4789999999999999998643 45555544455556666532  2444555


Q ss_pred             CCcEEEEEccCCcccccC---CCCCeeEEEEeCC-CCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecC--
Q 023772          165 DGTVRTFDIRVGRELSDD---LGQPVNCISMSND-GNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN--  238 (277)
Q Consensus       165 d~~i~i~d~~~~~~~~~~---~~~~v~~~~~s~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--  238 (277)
                      .+.|++||++.+......   +-..++.++|... ...+.+++.|++++.||.........+..-.+.... ..++-|  
T Consensus       179 g~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw-~~r~~Pfg  257 (1081)
T KOG0309|consen  179 GNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIW-RGRYLPFG  257 (1081)
T ss_pred             CCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcce-eccccccC
Confidence            678999999987654322   2345666777552 345788999999999998654332222211111111 112222  


Q ss_pred             CCceEEe--e-------cCCCeEEEEECcC-ccceeeeccCccee
Q 023772          239 SDAHVTG--G-------SEDGYIYFWDLVD-ASVVAKFKAHSLVV  273 (277)
Q Consensus       239 ~~~~l~s--g-------s~d~~i~iwd~~~-~~~~~~~~~h~~~v  273 (277)
                      +|.+++-  |       -.++.-..|+..+ ...++.|.||+..|
T Consensus       258 ~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V  302 (1081)
T KOG0309|consen  258 EGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVV  302 (1081)
T ss_pred             ceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHH
Confidence            2222221  1       1122333455444 36789999998765

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.93  E-value=6e-08  Score=85.53  Aligned_cols=180  Identities=14%  Similarity=0.197  Sum_probs=127.0

Q ss_pred             CCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEE
Q 023772           29 DGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAV  108 (277)
Q Consensus        29 ~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i  108 (277)
                      ++..++-|+--..+..+|..+.+..+...-..+.|.-+..  +++.+.+|...|+|.+-|..+-+.+.++..|++.|.++
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf  223 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF  223 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence            3556777777788888998888777666544444544443  57889999999999999999999999999999999755


Q ss_pred             EEecCCCEEEEEeC---------CCcEEEEeCccCCC-cceEeeccccCcEEEEEecCCeEEEeecCCcEEEEEcc---C
Q 023772          109 KFNEYSSVVVSAGY---------DQSLRAWDCRSHST-EPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIR---V  175 (277)
Q Consensus       109 ~~~~~~~~l~s~~~---------d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~---~  175 (277)
                      +  -.|++|++||.         |..|++||+|.... .+++... .+..+.....-...+++.+..|...+-|..   .
T Consensus       224 D--v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~-~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN  300 (1118)
T KOG1275|consen  224 D--VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY-GPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN  300 (1118)
T ss_pred             e--ccCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc-CchhhhhcccccceEEEEecccceeeccccccCC
Confidence            4  55889999974         78899999986432 2222211 111111111123457788888888887732   2


Q ss_pred             Cc---ccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEEC
Q 023772          176 GR---ELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDR  213 (277)
Q Consensus       176 ~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~  213 (277)
                      ..   ......+..+..++++++|+.++.|..+|.|.+|.-
T Consensus       301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence            11   111122344888999999999999999999999973

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.91  E-value=1.7e-09  Score=94.81  Aligned_cols=199  Identities=17%  Similarity=0.193  Sum_probs=143.0

Q ss_pred             eEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCC--CcEEEE
Q 023772           52 HIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYD--QSLRAW  129 (277)
Q Consensus        52 ~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d--~~i~iw  129 (277)
                      ..++|+.|...-++++|+...+.|+.|+..|.|+++++.+|....++.+|.++|+-+.-+.++.++++.+.-  .-..+|
T Consensus      1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred             cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHh
Confidence            345778888999999999999999999999999999999999999999999999999999998877665432  246788


Q ss_pred             eCccCCCcceEeeccccCcEEEEEecCCe--EEEeecCCcEEEEEccCCcccccCC------CCCeeEEEEeCCCCEEEE
Q 023772          130 DCRSHSTEPIQIIDSFQDSVMSVCLTKTE--IIGGSVDGTVRTFDIRVGRELSDDL------GQPVNCISMSNDGNCILA  201 (277)
Q Consensus       130 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~d~~i~i~d~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~  201 (277)
                      +..+. ..+...+.    ....+.++...  -+.|..-....+||+.++..+.+..      +..-++..|+|+...++ 
T Consensus      1173 ~~~s~-~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl- 1246 (1516)
T KOG1832|consen 1173 DASST-GGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL- 1246 (1516)
T ss_pred             ccccc-cCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe-
Confidence            87642 11221111    12233443322  2345555678899999887654422      22347889999988654 


Q ss_pred             EecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeecc
Q 023772          202 SCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKA  268 (277)
Q Consensus       202 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~  268 (277)
                        .||  .+||++..+.++.|..-.   ....-.|.|.|.-++..++     |||+++.++++....
T Consensus      1247 --ndG--vLWDvR~~~aIh~FD~ft---~~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~ 1301 (1516)
T KOG1832|consen 1247 --NDG--VLWDVRIPEAIHRFDQFT---DYGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPS 1301 (1516)
T ss_pred             --eCc--eeeeeccHHHHhhhhhhe---ecccccccCCCceEEeech-----hhhhHHHHHHhcCcc
Confidence              467  579999888887775432   2223357888888887664     799999888776553

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.91  E-value=9.1e-08  Score=83.09  Aligned_cols=254  Identities=14%  Similarity=0.167  Sum_probs=159.6

Q ss_pred             ccccceeeccCCcEEEEEEeCC------------CCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCC---C
Q 023772            8 RTEANVLKGHEGAVLAARFNGD------------GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTAD---N   72 (277)
Q Consensus         8 ~~~~~~l~~H~~~V~~~~~~~~------------~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~---~   72 (277)
                      -+..+.+.-|+..|+.++|.|.            .-+|+++.-.|.|.+||...+..+..++.|..++..+.|-+.   .
T Consensus        45 ~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~S  124 (1062)
T KOG1912|consen   45 LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDS  124 (1062)
T ss_pred             hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcc
Confidence            3455667889999999999763            125667888899999999998888899999999999998753   3


Q ss_pred             -CEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCC-CEEEEEeCCCcEEEEeCccCC-----CcceEeeccc
Q 023772           73 -SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYS-SVVVSAGYDQSLRAWDCRSHS-----TEPIQIIDSF  145 (277)
Q Consensus        73 -~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~~  145 (277)
                       ..|+.-....++.+|+..+|+....+........+..+.|.+ +.+.--+..|.+.+-+.-...     .+.+++...+
T Consensus       125 rd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~  204 (1062)
T KOG1912|consen  125 RDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDH  204 (1062)
T ss_pred             hheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCc
Confidence             456666777899999999999998887777777888888853 344444556666666542211     1122222221


Q ss_pred             cC-------------------c------EEEEEecC--CeEEEeecCCcEEEEEccCCccccc--CCCCCeeEEEEeCC-
Q 023772          146 QD-------------------S------VMSVCLTK--TEIIGGSVDGTVRTFDIRVGRELSD--DLGQPVNCISMSND-  195 (277)
Q Consensus       146 ~~-------------------~------~~~~~~~~--~~~~~g~~d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~-  195 (277)
                      .+                   .      +..+.+.|  ...+-....+.+.++|++-...+..  .....+.-+.+-|+ 
T Consensus       205 Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~  284 (1062)
T KOG1912|consen  205 SDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDP  284 (1062)
T ss_pred             cchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCC
Confidence            11                   0      01112222  2344556788899999876654432  11222334455554 


Q ss_pred             -CCEEEEEecCCeEEEEECCC----------------CceEEEEecccc-ceeeeeeEecCCCceEEeecCCCeEEEEEC
Q 023772          196 -GNCILASCLDSTLRLLDRST----------------GELLQEYKGHIC-KSFKTDCCLTNSDAHVTGGSEDGYIYFWDL  257 (277)
Q Consensus       196 -~~~l~~~~~d~~i~~wd~~~----------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~  257 (277)
                       ...|++...||.+.+|-.+.                +++...+...+. ..++..+|.+. ...++.--.+|...+|.+
T Consensus       285 ~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~-~sa~avl~s~g~~~~w~l  363 (1062)
T KOG1912|consen  285 RRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPST-PSALAVLYSSGDSTFWQL  363 (1062)
T ss_pred             CcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCC-hhhhhhhhhcchhHHHhh
Confidence             45799999999999998654                222222222211 12223334332 223333345777888999


Q ss_pred             cCccc
Q 023772          258 VDASV  262 (277)
Q Consensus       258 ~~~~~  262 (277)
                      .+|+.
T Consensus       364 ~~~ri  368 (1062)
T KOG1912|consen  364 SNGRI  368 (1062)
T ss_pred             hcCCc
Confidence            87543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.90  E-value=2e-07  Score=80.51  Aligned_cols=250  Identities=13%  Similarity=0.138  Sum_probs=160.3

Q ss_pred             CcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCe---------------eEEEEeccCccEEEEEEcCCCCEEEEEeCCCc
Q 023772           19 GAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI---------------HIKTYKSHGREVRDVHVTADNSKLISCGGDRQ   83 (277)
Q Consensus        19 ~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~---------------~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~   83 (277)
                      ....|+.|+.+..+++.||.||.+++-.+.+..               .-.++++|++.|.-+.|+.++++|-|+..+|.
T Consensus        15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl   94 (1189)
T KOG2041|consen   15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL   94 (1189)
T ss_pred             ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence            456799999999999999999999998754321               12467899999999999999999999999999


Q ss_pred             EEEEECCCCceeEE--eecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC--eE
Q 023772           84 IFYWDVSTGRVIRK--FRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--EI  159 (277)
Q Consensus        84 v~~wd~~~~~~~~~--~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  159 (277)
                      |.+|-+-.|.=...  -...++-|.++.|+.+|..+...-.||.|.+=.+..+..... .+...  -...+.++++  .+
T Consensus        95 IiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgK-eLkg~--~l~hv~ws~D~~~~  171 (1189)
T KOG2041|consen   95 IIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGK-ELKGQ--LLAHVLWSEDLEQA  171 (1189)
T ss_pred             EEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecch-hcchh--eccceeecccHHHH
Confidence            99998765532111  122456788999999999988888888887755443211000 00100  1112333333  24


Q ss_pred             EEeecCCcEEEEEccCCccc-------------ccCCCCCeeEEEEe--------CCCCEEEEEecCCeEEEEECCCC-c
Q 023772          160 IGGSVDGTVRTFDIRVGREL-------------SDDLGQPVNCISMS--------NDGNCILASCLDSTLRLLDRSTG-E  217 (277)
Q Consensus       160 ~~g~~d~~i~i~d~~~~~~~-------------~~~~~~~v~~~~~s--------~~~~~l~~~~~d~~i~~wd~~~~-~  217 (277)
                      +.+-.+|.+.+||.......             ....+..+..+.|.        |+-..|+.+-..|.+.|..-.+. .
T Consensus       172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~  251 (1189)
T KOG2041|consen  172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE  251 (1189)
T ss_pred             HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC
Confidence            45566788889986543221             11122334444442        46778888888998888765432 2


Q ss_pred             eEEEEeccccceeeeeeEecCCCceEEeecCC---------CeEEEEECcCccceeeeccCcceeEee
Q 023772          218 LLQEYKGHICKSFKTDCCLTNSDAHVTGGSED---------GYIYFWDLVDASVVAKFKAHSLVVKLL  276 (277)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d---------~~i~iwd~~~~~~~~~~~~h~~~v~~~  276 (277)
                      ++-.=.+    ...+...++++|..+|.++.|         +.|.+|..- |+.+..|+....-|+.|
T Consensus       252 Pvv~dtg----m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~-G~i~gtlkvpg~~It~l  314 (1189)
T KOG2041|consen  252 PVVVDTG----MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY-GHIVGTLKVPGSCITGL  314 (1189)
T ss_pred             CeEEecc----cEeecceecCCCcEEEEccCcccccCccccceEEEeccc-hhheEEEecCCceeeee
Confidence            2211112    233445678888888876432         256666543 77777777665555443

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.89  E-value=1.2e-06  Score=67.99  Aligned_cols=192  Identities=13%  Similarity=0.106  Sum_probs=114.8

Q ss_pred             EEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEec-------cCccEEEEEEcCC------CCEEEEEeCCCcEEEE
Q 023772           21 VLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKS-------HGREVRDVHVTAD------NSKLISCGGDRQIFYW   87 (277)
Q Consensus        21 V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-------h~~~v~~~~~~~~------~~~l~t~s~d~~v~~w   87 (277)
                      =+.++||||+.+||.+...|+|+++|+.... +..+..       -..+|..+.|.+-      ...|+.-..+|.++-+
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy  124 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY  124 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence            3579999999999999999999999986433 333322       1245666666532      2246666778888777


Q ss_pred             ECCCC-----ceeEE--eec-ccCceeEEEEecCCCEEEEEeCCCcE-EEEeCccCCCcceEeeccccCcEEEEEe---c
Q 023772           88 DVSTG-----RVIRK--FRG-HESEVNAVKFNEYSSVVVSAGYDQSL-RAWDCRSHSTEPIQIIDSFQDSVMSVCL---T  155 (277)
Q Consensus        88 d~~~~-----~~~~~--~~~-h~~~v~~i~~~~~~~~l~s~~~d~~i-~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~  155 (277)
                      -+..+     +...+  +.. +...|+++.++|..++|+.||....= ..+.             .....+.+..+   .
T Consensus       125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~-------------a~~~GLtaWRiL~~~  191 (282)
T PF15492_consen  125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSK-------------ASSCGLTAWRILSDS  191 (282)
T ss_pred             EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccc-------------ccccCceEEEEcCCC
Confidence            65321     22233  333 37799999999998888877653320 0000             00011111111   1


Q ss_pred             CCe-EEEeecCC------cEEEEEccCCcccc--cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccc
Q 023772          156 KTE-IIGGSVDG------TVRTFDIRVGRELS--DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHI  226 (277)
Q Consensus       156 ~~~-~~~g~~d~------~i~i~d~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~  226 (277)
                      |.. .++...|+      +..+|.+.+.+...  .....-|..|..||+|+.|++...+|.|.+|++-+-++.+.+..++
T Consensus       192 Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~e  271 (282)
T PF15492_consen  192 PYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDE  271 (282)
T ss_pred             CcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhh
Confidence            111 11111111      11233332222221  1234578999999999999999999999999998877777776543

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.89  E-value=1.5e-07  Score=71.80  Aligned_cols=199  Identities=14%  Similarity=0.124  Sum_probs=113.4

Q ss_pred             eeccCC-cEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCe------------eEEEEeccCccEEEEEEcCCCCEEEEEeC
Q 023772           14 LKGHEG-AVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI------------HIKTYKSHGREVRDVHVTADNSKLISCGG   80 (277)
Q Consensus        14 l~~H~~-~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~------------~~~~~~~h~~~v~~~~~~~~~~~l~t~s~   80 (277)
                      ..+|.+ .|+.+.|..+ ..|+++..++.+......++.            +.+.+..|+++-.+-+.+--++.++++..
T Consensus        31 i~~~~d~~~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~  109 (319)
T KOG4714|consen   31 IMQHADVKLSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYA  109 (319)
T ss_pred             cccccceEEEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCC
Confidence            345555 1444555433 455666666666665543322            23444455554444444445678999999


Q ss_pred             CCcEEEEECCCCcee-EEeecccCceeEEEEecCCCEEEEEe-----CCCcEEEEeCccCCCcceEeeccccCcEEEEEe
Q 023772           81 DRQIFYWDVSTGRVI-RKFRGHESEVNAVKFNEYSSVVVSAG-----YDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCL  154 (277)
Q Consensus        81 d~~v~~wd~~~~~~~-~~~~~h~~~v~~i~~~~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  154 (277)
                      ||.+.+++.+.-..+ +....-.....+..+...++.+.++.     .-+..+.|+++........  ......+.+++.
T Consensus       110 dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~--~~~~~~v~~l~~  187 (319)
T KOG4714|consen  110 DGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPS--KKALDAVTALCS  187 (319)
T ss_pred             CceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccc--ccccccchhhhC
Confidence            999999998752111 11111111122233334455554432     1234555665432211111  111223455544


Q ss_pred             cC--C-eEEEeecCCcEEEEEccCCccc---ccCCCCCeeEEEEeC-CCCEEEEEecCCeEEEEECCC
Q 023772          155 TK--T-EIIGGSVDGTVRTFDIRVGREL---SDDLGQPVNCISMSN-DGNCILASCLDSTLRLLDRST  215 (277)
Q Consensus       155 ~~--~-~~~~g~~d~~i~i~d~~~~~~~---~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~wd~~~  215 (277)
                      .|  + .+.+|+.||.+-+||.+...-+   ...+..+++.+-|+| ++..|+++++||.+--||..+
T Consensus       188 hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  188 HPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             CcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            43  2 3778999999999999876322   123567899999999 457899999999999999874

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.89  E-value=7.2e-07  Score=74.05  Aligned_cols=236  Identities=14%  Similarity=0.225  Sum_probs=138.6

Q ss_pred             CcEEEEEEeCCCCEEEEEeCCCc---------------EEEEcCCCCeeEEEEeccCcc--EE-EEEEcCCCCEEEEEeC
Q 023772           19 GAVLAARFNGDGNYCLSCGKDRT---------------IRLWNPHRGIHIKTYKSHGRE--VR-DVHVTADNSKLISCGG   80 (277)
Q Consensus        19 ~~V~~~~~~~~~~~l~s~s~d~~---------------v~iwd~~~~~~~~~~~~h~~~--v~-~~~~~~~~~~l~t~s~   80 (277)
                      ..|..+.|+|.+.||.|=+....               +.+||..+|..+..|.....+  .+ -+.|+-+.++.+-. .
T Consensus        72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v  150 (561)
T COG5354          72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-V  150 (561)
T ss_pred             CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-c
Confidence            45778899999999998765544               999999999999888876655  44 56777776665443 2


Q ss_pred             CCcEEEEECCCCcee-EEeecc-cCceeEEEEecCCC--EEEE-----EeCCCcEEEEeCccCCCcc-------------
Q 023772           81 DRQIFYWDVSTGRVI-RKFRGH-ESEVNAVKFNEYSS--VVVS-----AGYDQSLRAWDCRSHSTEP-------------  138 (277)
Q Consensus        81 d~~v~~wd~~~~~~~-~~~~~h-~~~v~~i~~~~~~~--~l~s-----~~~d~~i~iwd~~~~~~~~-------------  138 (277)
                      ...++++++ ++... ..+..- ...+..-.++|.++  .|+.     .+.++.+++|.+.......             
T Consensus       151 ~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLk  229 (561)
T COG5354         151 GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLK  229 (561)
T ss_pred             cCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEE
Confidence            345777775 22211 001000 12233333443311  1111     2344445555443211000             


Q ss_pred             -------------------------------------eEeeccccCcEEEEEecCC--e--EEEeecCCcEEEEEccCCc
Q 023772          139 -------------------------------------IQIIDSFQDSVMSVCLTKT--E--IIGGSVDGTVRTFDIRVGR  177 (277)
Q Consensus       139 -------------------------------------~~~~~~~~~~~~~~~~~~~--~--~~~g~~d~~i~i~d~~~~~  177 (277)
                                                           +.......++|..+.+.+.  .  ++.|-.+-.+.++|++..-
T Consensus       230 W~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl  309 (561)
T COG5354         230 WQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL  309 (561)
T ss_pred             EecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccce
Confidence                                                 0000022345556666443  2  4455667777788877652


Q ss_pred             ccccCCCCCeeEEEEeCCCCEEEEEecC---CeEEEEECCCCc-eEEEEeccccceeeeeeEecCCCceEEeec------
Q 023772          178 ELSDDLGQPVNCISMSNDGNCILASCLD---STLRLLDRSTGE-LLQEYKGHICKSFKTDCCLTNSDAHVTGGS------  247 (277)
Q Consensus       178 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs------  247 (277)
                       ......+.=+.+.|+|.+++++.++.|   |.+-+||..... ++..+.+..    ...|-++|++.++.+..      
T Consensus       310 -~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n----~s~~~wspd~qF~~~~~ts~k~~  384 (561)
T COG5354         310 -RFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN----TSYCDWSPDGQFYDTDTTSEKLR  384 (561)
T ss_pred             -EEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC----ceEeeccCCceEEEecCCCcccc
Confidence             222234455778899999999987765   478899986543 344565542    23366899998877652      


Q ss_pred             CCCeEEEEECcCcc
Q 023772          248 EDGYIYFWDLVDAS  261 (277)
Q Consensus       248 ~d~~i~iwd~~~~~  261 (277)
                      .|..|+|||+.-..
T Consensus       385 ~Dn~i~l~~v~g~~  398 (561)
T COG5354         385 VDNSIKLWDVYGAK  398 (561)
T ss_pred             cCcceEEEEecCch
Confidence            48899999987543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.87  E-value=6.2e-07  Score=74.45  Aligned_cols=236  Identities=16%  Similarity=0.205  Sum_probs=152.3

Q ss_pred             cCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCC---------------
Q 023772           17 HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGD---------------   81 (277)
Q Consensus        17 H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d---------------   81 (277)
                      -.-++..++|||.|.+|++.-. ..|.+|....+..+..+. | ..|..+.|+|++++|.|=+..               
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~  107 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHA-AGVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK  107 (561)
T ss_pred             cCcchhheeecCcchheehhhc-cceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence            4567899999999999998555 678999977765555554 2 589999999999999985433               


Q ss_pred             CcEEEEECCCCceeEEeecccCc--ee-EEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC-
Q 023772           82 RQIFYWDVSTGRVIRKFRGHESE--VN-AVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT-  157 (277)
Q Consensus        82 ~~v~~wd~~~~~~~~~~~~h~~~--v~-~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-  157 (277)
                      ..+.+||..+|.++..+..-..+  .+ -+.|+-++++++-. ....+.++++ +.+.............+..+.++|. 
T Consensus       108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~  185 (561)
T COG5354         108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEG  185 (561)
T ss_pred             CceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCC
Confidence            35999999999999998876665  55 67888887776655 3456899986 3322211111111234555555543 


Q ss_pred             ---eEE-----EeecCCcEEEEEccCCcccccC--CCCCeeEEEEeCCCCEEEEEe-----------cCCeEEEEECCCC
Q 023772          158 ---EII-----GGSVDGTVRTFDIRVGRELSDD--LGQPVNCISMSNDGNCILASC-----------LDSTLRLLDRSTG  216 (277)
Q Consensus       158 ---~~~-----~g~~d~~i~i~d~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~-----------~d~~i~~wd~~~~  216 (277)
                         .++     .++.++.+++|.+..+..+...  ....--.+.|.+.|++|+.--           .+..++|++++..
T Consensus       186 n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~  265 (561)
T COG5354         186 NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER  265 (561)
T ss_pred             CCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc
Confidence               122     2466778888888766544332  122223467788887765421           2356788888643


Q ss_pred             ceEEEEeccccceeeeeeEecCCCce--EEeecCCCeEEEEECcCc
Q 023772          217 ELLQEYKGHICKSFKTDCCLTNSDAH--VTGGSEDGYIYFWDLVDA  260 (277)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~--l~sgs~d~~i~iwd~~~~  260 (277)
                      .+ ..-.+-.  ..+-+.++.|.++.  +++|-.+-.+.++|++..
T Consensus       266 ~i-~V~~~~~--~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N  308 (561)
T COG5354         266 SI-PVEKDLK--DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN  308 (561)
T ss_pred             cc-ceecccc--ccceeeeecccCCceeEEecccccceeecccccc
Confidence            22 2211211  23455667776554  445678888888888754

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.85  E-value=7.5e-07  Score=74.78  Aligned_cols=232  Identities=16%  Similarity=0.224  Sum_probs=139.9

Q ss_pred             EEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCC-----------CcEEEEECC
Q 023772           22 LAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGD-----------RQIFYWDVS   90 (277)
Q Consensus        22 ~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d-----------~~v~~wd~~   90 (277)
                      +-+.|||.|.||+|-=. .-|.+|-..+-..++.|. | ..|.-+.|+|+.+||+|=|..           ..+.+||+.
T Consensus       214 tyv~wSP~GTYL~t~Hk-~GI~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~  290 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHK-QGIALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA  290 (698)
T ss_pred             eeEEecCCceEEEEEec-cceeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence            45899999999999765 668999877655566664 4 478999999999999996532           579999999


Q ss_pred             CCceeEEeec--ccCcee-EEEEecCCCEEEEEeCCCcEEEEeCccCCC--------cceEeeccccC-cEEE-------
Q 023772           91 TGRVIRKFRG--HESEVN-AVKFNEYSSVVVSAGYDQSLRAWDCRSHST--------EPIQIIDSFQD-SVMS-------  151 (277)
Q Consensus        91 ~~~~~~~~~~--h~~~v~-~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~-~~~~-------  151 (277)
                      +|...++|..  ....++ -..|+.|++++|--..| +|.||+..+...        ..+..+...+. .+.+       
T Consensus       291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~  369 (698)
T KOG2314|consen  291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETN  369 (698)
T ss_pred             ccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEEEEccccc
Confidence            9999888876  233333 34688899998877664 588887543211        00111110000 0000       


Q ss_pred             --------EE---------------------e--cCCeEEE----------eecCCcEEEEEccCCcccc--cCCCCCee
Q 023772          152 --------VC---------------------L--TKTEIIG----------GSVDGTVRTFDIRVGRELS--DDLGQPVN  188 (277)
Q Consensus       152 --------~~---------------------~--~~~~~~~----------g~~d~~i~i~d~~~~~~~~--~~~~~~v~  188 (277)
                              +.                     +  +++.|..          .+.-..+.|+.++......  ......|-
T Consensus       370 ~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi  449 (698)
T KOG2314|consen  370 NIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVI  449 (698)
T ss_pred             CCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchhee
Confidence                    00                     0  0111100          0000112222222211110  12345677


Q ss_pred             EEEEeCCCCEEEEEec---CCeEEEEECCCC----ceEEEEeccccceeeeeeEecCCCceEEee---cCCCeEEEEECc
Q 023772          189 CISMSNDGNCILASCL---DSTLRLLDRSTG----ELLQEYKGHICKSFKTDCCLTNSDAHVTGG---SEDGYIYFWDLV  258 (277)
Q Consensus       189 ~~~~s~~~~~l~~~~~---d~~i~~wd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg---s~d~~i~iwd~~  258 (277)
                      ..+|-|.|+.+++-+.   ..++.+|-+.+.    +++..+..    .......++|.|++++.+   |..|.+.++|..
T Consensus       450 ~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk----~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~  525 (698)
T KOG2314|consen  450 AFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK----KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD  525 (698)
T ss_pred             eeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc----cccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence            8899999988766443   346888887632    33444432    223445689999997764   678999999998


Q ss_pred             Ccc
Q 023772          259 DAS  261 (277)
Q Consensus       259 ~~~  261 (277)
                      -..
T Consensus       526 ~a~  528 (698)
T KOG2314|consen  526 YAD  528 (698)
T ss_pred             hhh
Confidence            533

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.85  E-value=4.3e-07  Score=69.64  Aligned_cols=187  Identities=11%  Similarity=0.082  Sum_probs=116.5

Q ss_pred             CCCcEEEEECCCCc--eeEEeecccCceeEEEEec-----CCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcE---
Q 023772           80 GDRQIFYWDVSTGR--VIRKFRGHESEVNAVKFNE-----YSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSV---  149 (277)
Q Consensus        80 ~d~~v~~wd~~~~~--~~~~~~~h~~~v~~i~~~~-----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~---  149 (277)
                      ....+.+|+.-+..  .+..+       ..+.|.|     ..-+|+.|+.-|...+|.+.+.+. ..++...+...+   
T Consensus        50 ~t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~-h~~~cd~snn~v~~~  121 (344)
T KOG4532|consen   50 KTISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDG-HLYQCDVSNNDVTLV  121 (344)
T ss_pred             ceeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCccc-ceeeecccccchhhh
Confidence            34456777765432  33322       2345544     345788899999999999876433 333333333322   


Q ss_pred             EEEEecCCeEEEeecCCcEEEEEccCCcccccCCC--CCeeEEEEeCCCCEEEEEecCCeEEEEECCC-C-ceEEEEecc
Q 023772          150 MSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLG--QPVNCISMSNDGNCILASCLDSTLRLLDRST-G-ELLQEYKGH  225 (277)
Q Consensus       150 ~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~-~-~~~~~~~~~  225 (277)
                      ...+...-.+..++.|.++++.++..+..-...+.  -.++++.++++++++++.+....|..|.+.. + ..+..+...
T Consensus       122 ~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~  201 (344)
T KOG4532|consen  122 KRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAP  201 (344)
T ss_pred             hhhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecc
Confidence            12222334467788999999998865432222222  2478999999999999999999999998743 2 333323222


Q ss_pred             ccceeeeeeEecCCCceEEeecCCCeEEEEECcCccce-----eeeccCcceeEe
Q 023772          226 ICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVV-----AKFKAHSLVVKL  275 (277)
Q Consensus       226 ~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~-----~~~~~h~~~v~~  275 (277)
                      . ..-....+++..+..+|+++.||.+.|||++.....     .+-..|.+++|.
T Consensus       202 t-~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~  255 (344)
T KOG4532|consen  202 T-SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRV  255 (344)
T ss_pred             c-CCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEE
Confidence            1 111233457788889999999999999999875332     222246777663

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.85  E-value=4.7e-06  Score=68.99  Aligned_cols=121  Identities=16%  Similarity=0.232  Sum_probs=98.9

Q ss_pred             ceeeccCCcEEEEEEeCCCCEEEEEeCCC-cEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772           12 NVLKGHEGAVLAARFNGDGNYCLSCGKDR-TIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~d~-~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~   90 (277)
                      .+.-+|.+.|.-.++..+++-++-|..|| .+-|+|..+++ .+.++..-+.|.++..+++|++++.+.....+-+.|++
T Consensus       353 ~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid  431 (668)
T COG4946         353 SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID  431 (668)
T ss_pred             eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence            33458899999999999888889999999 89999988775 45666677899999999999999999888899999999


Q ss_pred             CCceeEEeecccCceeEEEEecCCCEEEEEeCCC----cEEEEeCcc
Q 023772           91 TGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQ----SLRAWDCRS  133 (277)
Q Consensus        91 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~----~i~iwd~~~  133 (277)
                      ++.+..-=+...+-|....|+|+++.+|-+--+|    .|+++|+..
T Consensus       432 ngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~  478 (668)
T COG4946         432 NGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG  478 (668)
T ss_pred             CCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence            9986544444566788999999999988775444    578887654

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.84  E-value=7e-09  Score=81.83  Aligned_cols=118  Identities=18%  Similarity=0.294  Sum_probs=95.4

Q ss_pred             cCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC-----eeEEEEeccCccEEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 023772           17 HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG-----IHIKTYKSHGREVRDVHVTA-DNSKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        17 H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~-----~~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~d~~v~~wd~~   90 (277)
                      .++.|.++.|...++++..|...|.|..+|++..     .+...+ -|...|+++.... ++++|++.+.+|+|++||+.
T Consensus       251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R  329 (425)
T KOG2695|consen  251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR  329 (425)
T ss_pred             cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence            4567899999999999999999999999998764     233333 4888999998877 78999999999999999998


Q ss_pred             CCce---eEEeecccCceeEE--EEecCCCEEEEEeCCCcEEEEeCccCC
Q 023772           91 TGRV---IRKFRGHESEVNAV--KFNEYSSVVVSAGYDQSLRAWDCRSHS  135 (277)
Q Consensus        91 ~~~~---~~~~~~h~~~v~~i--~~~~~~~~l~s~~~d~~i~iwd~~~~~  135 (277)
                      --++   ++++.+|.+.-.-+  -+.+....+++++.|...++|.+..+.
T Consensus       330 ~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh  379 (425)
T KOG2695|consen  330 ATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH  379 (425)
T ss_pred             hhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence            6666   89999996543323  334566788999999999999998654

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.83  E-value=2.1e-05  Score=61.18  Aligned_cols=233  Identities=14%  Similarity=0.164  Sum_probs=126.1

Q ss_pred             EEEeCCCCEEEEEeCCCcEEEEcCCCC--eeEEEE---eccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe
Q 023772           24 ARFNGDGNYCLSCGKDRTIRLWNPHRG--IHIKTY---KSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKF   98 (277)
Q Consensus        24 ~~~~~~~~~l~s~s~d~~v~iwd~~~~--~~~~~~---~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~   98 (277)
                      ++.+.+|+.||. -.|..|.|=..+..  ..+...   +.....-+.++|+|++..|+.+...|+|++||+...++ ..+
T Consensus         3 ~~~~~~Gk~lAi-~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I   80 (282)
T PF15492_consen    3 LALSSDGKLLAI-LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVI   80 (282)
T ss_pred             eeecCCCcEEEE-EeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccccee-EEc
Confidence            456678888766 44667777654331  222222   22334568899999999999999999999999975433 222


Q ss_pred             ec-------ccCceeEEEEecC------CCEEEEEeCCCcEEEEeCccCCCc-----ceEee-ccccCcEEEEEecCCe-
Q 023772           99 RG-------HESEVNAVKFNEY------SSVVVSAGYDQSLRAWDCRSHSTE-----PIQII-DSFQDSVMSVCLTKTE-  158 (277)
Q Consensus        99 ~~-------h~~~v~~i~~~~~------~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~-  158 (277)
                      ..       -...|.++.|.+-      ...|+.-..+|.++-|-+......     ....+ ...+..+.++..++.+ 
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~  160 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR  160 (282)
T ss_pred             CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence            21       2356677777543      224555678888887765322111     11112 2234556666666543 


Q ss_pred             -EEEeecCCcEEEEEccCCcccccCCCC---CeeEEEEeCCCCEEEEEecCCe------EEEEECCCCceEEEEeccccc
Q 023772          159 -IIGGSVDGTVRTFDIRVGRELSDDLGQ---PVNCISMSNDGNCILASCLDST------LRLLDRSTGELLQEYKGHICK  228 (277)
Q Consensus       159 -~~~g~~d~~i~i~d~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~d~~------i~~wd~~~~~~~~~~~~~~~~  228 (277)
                       +++|+....      ..+  .......   ..+-+.-+|..+. ++..+|+.      ..+|.+-+.+... ..+. ..
T Consensus       161 LLlVgG~~~~------~~~--~s~a~~~GLtaWRiL~~~Pyyk~-v~~~~~~~~~~~~~~~~~~~~~~~~fs-~~~~-~~  229 (282)
T PF15492_consen  161 LLLVGGCEQN------QDG--MSKASSCGLTAWRILSDSPYYKQ-VTSSEDDITASSKRRGLLRIPSFKFFS-RQGQ-EQ  229 (282)
T ss_pred             EEEEeccCCC------CCc--cccccccCceEEEEcCCCCcEEE-ccccCccccccccccceeeccceeeee-cccc-CC
Confidence             445543321      000  0000000   1111111222211 12222221      1233333222211 1111 12


Q ss_pred             eeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccC
Q 023772          229 SFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAH  269 (277)
Q Consensus       229 ~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h  269 (277)
                      ..+...++||||.+||+-+.+|.|.+|++.+.++..+.+.+
T Consensus       230 d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  230 DGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             CceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence            33455678999999999999999999999999888777654

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.81  E-value=3.6e-06  Score=71.49  Aligned_cols=223  Identities=13%  Similarity=0.135  Sum_probs=133.7

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCeeEEEEeccCc----------cEE-EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe
Q 023772           30 GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGR----------EVR-DVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKF   98 (277)
Q Consensus        30 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~----------~v~-~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~   98 (277)
                      +..++.++.++.+.-+|..+|+.+-..+....          .+. ....  .+..++.++.++.+..+|.++|+.+.+.
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~  146 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT  146 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence            55777788889999999999987765543220          000 1111  3567777888999999999999988776


Q ss_pred             ecccCceeE-EEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccC---cEEEEEecCCeEEEeecCCcEEEEEcc
Q 023772           99 RGHESEVNA-VKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQD---SVMSVCLTKTEIIGGSVDGTVRTFDIR  174 (277)
Q Consensus        99 ~~h~~~v~~-i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~d~~i~i~d~~  174 (277)
                      .... ++.+ ....  +..++.+..++.+..+|..+++............   ...+.......++.++.++.+..+|..
T Consensus       147 ~~~~-~~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~  223 (394)
T PRK11138        147 KVAG-EALSRPVVS--DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLME  223 (394)
T ss_pred             cCCC-ceecCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEcc
Confidence            5432 2221 1111  3456667788999999987654322111110000   000111123456777888999888988


Q ss_pred             CCcccccC-CCCC--------eeEEEEeC--CCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceE
Q 023772          175 VGRELSDD-LGQP--------VNCISMSN--DGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHV  243 (277)
Q Consensus       175 ~~~~~~~~-~~~~--------v~~~~~s~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  243 (277)
                      +++..-.. ...+        ...+.-+|  .+..++.++.++.++.+|..+|+.+....-..  .  ...  ...+..+
T Consensus       224 ~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~--~--~~~--~~~~~~v  297 (394)
T PRK11138        224 QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS--V--NDF--AVDGGRI  297 (394)
T ss_pred             CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC--c--cCc--EEECCEE
Confidence            77643221 1100        01111122  24567777889999999999998876543211  0  111  1235567


Q ss_pred             EeecCCCeEEEEECcCccce
Q 023772          244 TGGSEDGYIYFWDLVDASVV  263 (277)
Q Consensus       244 ~sgs~d~~i~iwd~~~~~~~  263 (277)
                      ..++.||.++..|..+|+.+
T Consensus       298 y~~~~~g~l~ald~~tG~~~  317 (394)
T PRK11138        298 YLVDQNDRVYALDTRGGVEL  317 (394)
T ss_pred             EEEcCCCeEEEEECCCCcEE
Confidence            77788999999999988765

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=3.6e-07  Score=73.72  Aligned_cols=93  Identities=14%  Similarity=0.140  Sum_probs=75.2

Q ss_pred             EEEEcCCCCeeEEEEeccCccEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCC-CEEEE
Q 023772           42 IRLWNPHRGIHIKTYKSHGREVRDVHVTADNS-KLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYS-SVVVS  119 (277)
Q Consensus        42 v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s  119 (277)
                      +++.+..+-+....+..|...|.+++|+|.++ ++..++-+.+|++.|+++..++.++..+ .++++++|.-+. +++..
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa  253 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA  253 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence            44444444444445566778899999999776 7888999999999999999999999887 899999998764 56777


Q ss_pred             EeCCCcEEEEeCccCC
Q 023772          120 AGYDQSLRAWDCRSHS  135 (277)
Q Consensus       120 ~~~d~~i~iwd~~~~~  135 (277)
                      |..+|.|.+||++...
T Consensus       254 Gl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  254 GLQNGMVLVYDMRQPE  269 (463)
T ss_pred             eccCceEEEEEccCCC
Confidence            8889999999998754

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.80  E-value=3.3e-05  Score=61.18  Aligned_cols=208  Identities=16%  Similarity=0.179  Sum_probs=130.1

Q ss_pred             EEEEEeC-CCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEc-CCCCEEEEEeCCCcEEEEECCCCceeEEee
Q 023772           22 LAARFNG-DGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVT-ADNSKLISCGGDRQIFYWDVSTGRVIRKFR   99 (277)
Q Consensus        22 ~~~~~~~-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~   99 (277)
                      .+..|.+ ++.++++--..+.|..|+..++.... +...  ....+.+. ++ ..++.+...+ +.++|..+++......
T Consensus         3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~--~~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~   77 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP--GPNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLAD   77 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS--SEEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEE
T ss_pred             cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC--CCceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEee
Confidence            3578887 77777787788999999998875433 3322  27777787 55 5555555544 5555998886543322


Q ss_pred             c-----ccCceeEEEEecCCCEEEEEeCC--------CcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeE-EEee
Q 023772          100 G-----HESEVNAVKFNEYSSVVVSAGYD--------QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEI-IGGS  163 (277)
Q Consensus       100 ~-----h~~~v~~i~~~~~~~~l~s~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~g~  163 (277)
                      .     .....+.+.+.+++++.++....        |.+..++.. ..   .............+.+++  +.+ ++-+
T Consensus        78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~---~~~~~~~~~~pNGi~~s~dg~~lyv~ds  153 (246)
T PF08450_consen   78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK---VTVVADGLGFPNGIAFSPDGKTLYVADS  153 (246)
T ss_dssp             EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE---EEEEEEEESSEEEEEEETTSSEEEEEET
T ss_pred             ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce---EEEEecCcccccceEECCcchheeeccc
Confidence            2     34567899999999988887654        456666654 21   122221223334455554  444 4567


Q ss_pred             cCCcEEEEEccCCcc-------cccCCCC--CeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeee
Q 023772          164 VDGTVRTFDIRVGRE-------LSDDLGQ--PVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDC  234 (277)
Q Consensus       164 ~d~~i~i~d~~~~~~-------~~~~~~~--~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  234 (277)
                      ..+.|..|++.....       +......  ..-.++++.+|+..++....+.|.++|.. |+++..+..-.  ...+.+
T Consensus       154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~--~~~t~~  230 (246)
T PF08450_consen  154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPV--PRPTNC  230 (246)
T ss_dssp             TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SS--SSEEEE
T ss_pred             ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC--CCEEEE
Confidence            778898888853221       1111122  36789999999988888889999999998 88888776442  245677


Q ss_pred             Eec-CCCc
Q 023772          235 CLT-NSDA  241 (277)
Q Consensus       235 ~~~-~~~~  241 (277)
                      +|. ++.+
T Consensus       231 ~fgg~~~~  238 (246)
T PF08450_consen  231 AFGGPDGK  238 (246)
T ss_dssp             EEESTTSS
T ss_pred             EEECCCCC
Confidence            774 4433

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.79  E-value=3.3e-07  Score=79.15  Aligned_cols=192  Identities=13%  Similarity=0.211  Sum_probs=125.2

Q ss_pred             ceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEE--EeccCccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 023772           12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKT--YKSHGREVRDVHVTADNSKLISCGGDRQIFYWDV   89 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~   89 (277)
                      +.|.||.+.|.-+.|+.+...|-|...+|-|.+|=+.+|.....  -......|.++.|..+|.+|...-.||.|-+=.+
T Consensus        65 QtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv  144 (1189)
T KOG2041|consen   65 QTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV  144 (1189)
T ss_pred             hhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence            46789999999999999999999999999999998776643221  1223457899999999999999999999887776


Q ss_pred             CCCcee-EEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCC-----cc-e---EeeccccCcEEEEE------
Q 023772           90 STGRVI-RKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHST-----EP-I---QIIDSFQDSVMSVC------  153 (277)
Q Consensus        90 ~~~~~~-~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----~~-~---~~~~~~~~~~~~~~------  153 (277)
                      +..+.- +.+++  .....+.|++|.+.++.+-.+|.+.++|-...-.     .. +   -.+...+..+..+.      
T Consensus       145 dGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~  222 (1189)
T KOG2041|consen  145 DGNRIWGKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPY  222 (1189)
T ss_pred             ccceecchhcch--heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCcc
Confidence            543321 11221  1223578999999888888899999998643210     00 0   01111222222222      


Q ss_pred             ----ecCCeEEEeecCCcEEEEEccCC-cccccCCCCCeeEEEEeCCCCEEEEEecC
Q 023772          154 ----LTKTEIIGGSVDGTVRTFDIRVG-RELSDDLGQPVNCISMSNDGNCILASCLD  205 (277)
Q Consensus       154 ----~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  205 (277)
                          ++...++.+-..|.+.+---+.. ..+....+..+....|+++|..|+.++.|
T Consensus       223 ~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~  279 (1189)
T KOG2041|consen  223 QPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGND  279 (1189)
T ss_pred             ccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCc
Confidence                22234666666666655322211 12222334567778999999999988754

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.78  E-value=1.6e-06  Score=72.86  Aligned_cols=235  Identities=13%  Similarity=0.198  Sum_probs=129.4

Q ss_pred             cEEEEEEeCCCCEEEEEeC-----------CCcEEEEcCCCCeeEEEEec--cCccEE-EEEEcCCCCEEEEEeCCCcEE
Q 023772           20 AVLAARFNGDGNYCLSCGK-----------DRTIRLWNPHRGIHIKTYKS--HGREVR-DVHVTADNSKLISCGGDRQIF   85 (277)
Q Consensus        20 ~V~~~~~~~~~~~l~s~s~-----------d~~v~iwd~~~~~~~~~~~~--h~~~v~-~~~~~~~~~~l~t~s~d~~v~   85 (277)
                      .|.-+.|||+.+||+|-|.           ...++|||+.+|...+.|..  ....++ -..|+.++++++--.. .+|.
T Consensus       251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sis  329 (698)
T KOG2314|consen  251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSIS  329 (698)
T ss_pred             CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEE
Confidence            3778999999999998653           26789999999998888876  233333 4578999999987665 4688


Q ss_pred             EEECCCCceeEEeecccCceeEEEEecCCCEEEEEe----------------CCC---cEEEEeCc--------cCC---
Q 023772           86 YWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAG----------------YDQ---SLRAWDCR--------SHS---  135 (277)
Q Consensus        86 ~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~----------------~d~---~i~iwd~~--------~~~---  135 (277)
                      +++...-.++..-.-.-..|....|+|.+++||-=.                .-.   +.++++..        ++.   
T Consensus       330 IyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLc  409 (698)
T KOG2314|consen  330 IYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLC  409 (698)
T ss_pred             EEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEE
Confidence            887654222111000112233333344333222110                000   01111110        000   


Q ss_pred             --------C------cceEeec-----------cccCcEEEEEecCC--eE--EEee-cCCcEEEEEccC-Ccc---ccc
Q 023772          136 --------T------EPIQIID-----------SFQDSVMSVCLTKT--EI--IGGS-VDGTVRTFDIRV-GRE---LSD  181 (277)
Q Consensus       136 --------~------~~~~~~~-----------~~~~~~~~~~~~~~--~~--~~g~-~d~~i~i~d~~~-~~~---~~~  181 (277)
                              .      ....++.           .....+..+.+.|.  .+  ++|. ...++++|.+++ ...   +..
T Consensus       410 vkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~  489 (698)
T KOG2314|consen  410 VKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKE  489 (698)
T ss_pred             EEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhh
Confidence                    0      0001110           12234555565554  33  3332 245788998874 222   222


Q ss_pred             CCCCCeeEEEEeCCCCEEEEE---ecCCeEEEEECCCCceEEE-EeccccceeeeeeEecCCCceEEeecC------CCe
Q 023772          182 DLGQPVNCISMSNDGNCILAS---CLDSTLRLLDRSTGELLQE-YKGHICKSFKTDCCLTNSDAHVTGGSE------DGY  251 (277)
Q Consensus       182 ~~~~~v~~~~~s~~~~~l~~~---~~d~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~sgs~------d~~  251 (277)
                      ......+.+.|+|.|++++.+   |..|.+..+|..-..+... ...|   ......-+.|.|+|+++++.      |.-
T Consensus       490 ~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh---~~at~veWDPtGRYvvT~ss~wrhk~d~G  566 (698)
T KOG2314|consen  490 LDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH---FAATEVEWDPTGRYVVTSSSSWRHKVDNG  566 (698)
T ss_pred             hcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc---cccccceECCCCCEEEEeeehhhhccccc
Confidence            223567889999999998776   4578899999874333221 1112   12233456799999999865      334


Q ss_pred             EEEEECc
Q 023772          252 IYFWDLV  258 (277)
Q Consensus       252 i~iwd~~  258 (277)
                      -++|+..
T Consensus       567 Yri~tfq  573 (698)
T KOG2314|consen  567 YRIFTFQ  573 (698)
T ss_pred             eEEEEee
Confidence            4556554

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.77  E-value=8.2e-06  Score=75.84  Aligned_cols=199  Identities=18%  Similarity=0.209  Sum_probs=124.9

Q ss_pred             ceeeccCCcEEEEEEeCCCCEEEEEeC----C--CcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeC---CC
Q 023772           12 NVLKGHEGAVLAARFNGDGNYCLSCGK----D--RTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGG---DR   82 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~----d--~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~---d~   82 (277)
                      ..+. +.+.-..++|-.||.++|..+-    +  +.+|||+-+ |....+.+.-.+--.+++|.|.|++|++.-.   ..
T Consensus       204 ~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~  281 (928)
T PF04762_consen  204 GKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRH  281 (928)
T ss_pred             Cccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCc
Confidence            3445 6666678999999999996553    2  689999954 7666665554555568899999999998753   34


Q ss_pred             cEEEEECCCCceeEEee----cccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeec-cccCcEEEEEecC-
Q 023772           83 QIFYWDVSTGRVIRKFR----GHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIID-SFQDSVMSVCLTK-  156 (277)
Q Consensus        83 ~v~~wd~~~~~~~~~~~----~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~-  156 (277)
                      .|.+|.- +|..-..|.    .....|..+.|++++..|+..-.|. |.+|-..+-.-...+.+. ........+.|++ 
T Consensus       282 ~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe  359 (928)
T PF04762_consen  282 DVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPE  359 (928)
T ss_pred             EEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCC
Confidence            5777763 444333332    3456899999999999999977666 999976542111111111 0111112233332 


Q ss_pred             --CeEEEeecCCcEEEEEc-------------------------------cCCcccc------cCCCCCeeEEEEeCCCC
Q 023772          157 --TEIIGGSVDGTVRTFDI-------------------------------RVGRELS------DDLGQPVNCISMSNDGN  197 (277)
Q Consensus       157 --~~~~~g~~d~~i~i~d~-------------------------------~~~~~~~------~~~~~~v~~~~~s~~~~  197 (277)
                        ..+.....++.+..+++                               +.....+      .....+|.+++|++++.
T Consensus       360 ~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~  439 (928)
T PF04762_consen  360 KPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNS  439 (928)
T ss_pred             CCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCC
Confidence              22444444344433322                               2111000      12346799999999998


Q ss_pred             EEEEEecCCeEEEEECC
Q 023772          198 CILASCLDSTLRLLDRS  214 (277)
Q Consensus       198 ~l~~~~~d~~i~~wd~~  214 (277)
                      .+++-..||.|.+|...
T Consensus       440 ~~avl~~d~~l~~~~~~  456 (928)
T PF04762_consen  440 RFAVLTSDGSLSIYEWD  456 (928)
T ss_pred             eEEEEECCCCEEEEEec
Confidence            88888999999999853

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.77  E-value=6e-06  Score=69.47  Aligned_cols=198  Identities=11%  Similarity=0.144  Sum_probs=125.1

Q ss_pred             ccCCcEEEEEEeCCC--CEEEE-----EeCCCcEEEEcCCCCe-----eEEEEeccCccEEEEEEcCCCC-EEEEEe--C
Q 023772           16 GHEGAVLAARFNGDG--NYCLS-----CGKDRTIRLWNPHRGI-----HIKTYKSHGREVRDVHVTADNS-KLISCG--G   80 (277)
Q Consensus        16 ~H~~~V~~~~~~~~~--~~l~s-----~s~d~~v~iwd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~-~l~t~s--~   80 (277)
                      -|...|....++|.+  ..+++     .|.=..||||....+.     ..++|-.  ..--.+.|++-+. .|+-++  -
T Consensus       163 l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFk--adkvqm~WN~~gt~LLvLastdV  240 (566)
T KOG2315|consen  163 LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFK--ADKVQMKWNKLGTALLVLASTDV  240 (566)
T ss_pred             eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccc--cceeEEEeccCCceEEEEEEEee
Confidence            356778888888753  34443     4666789999754221     1122221  2234566776554 333232  2


Q ss_pred             C---------CcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEE--eCCCcEEEEeCccCCCcceEeeccccCcE
Q 023772           81 D---------RQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSA--GYDQSLRAWDCRSHSTEPIQIIDSFQDSV  149 (277)
Q Consensus        81 d---------~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  149 (277)
                      |         .++.+.+++...+.-.+. ..++|.++.|+++++.++.+  -.=-++.+||++.   .++..+...+...
T Consensus       241 Dktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~---~~v~df~egpRN~  316 (566)
T KOG2315|consen  241 DKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG---KPVFDFPEGPRNT  316 (566)
T ss_pred             cCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC---CEeEeCCCCCccc
Confidence            3         357777776333333332 47899999999999876654  3345688888864   3444454444445


Q ss_pred             EEEEecCCeEEEeec---CCcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEec------CCeEEEEECCCCceEE
Q 023772          150 MSVCLTKTEIIGGSV---DGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCL------DSTLRLLDRSTGELLQ  220 (277)
Q Consensus       150 ~~~~~~~~~~~~g~~---d~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------d~~i~~wd~~~~~~~~  220 (277)
                      ..+.+.++.++.++.   -|.+.+||..+.+.+........+-..|+|||.+|+++..      |+.++||+.. |..+.
T Consensus       317 ~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~  395 (566)
T KOG2315|consen  317 AFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLH  395 (566)
T ss_pred             eEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-Cceee
Confidence            555555666655554   4789999999876666554455566799999999999864      7789999984 54443

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.76  E-value=5.1e-05  Score=60.82  Aligned_cols=247  Identities=12%  Similarity=0.143  Sum_probs=152.1

Q ss_pred             eccCCcEEEEEEeCCCCEEEEEeC---CCcEEEEcCCC--CeeEE--EEeccCccEEEEEEcCCCCEEEEEeC-CCcEEE
Q 023772           15 KGHEGAVLAARFNGDGNYCLSCGK---DRTIRLWNPHR--GIHIK--TYKSHGREVRDVHVTADNSKLISCGG-DRQIFY   86 (277)
Q Consensus        15 ~~H~~~V~~~~~~~~~~~l~s~s~---d~~v~iwd~~~--~~~~~--~~~~h~~~v~~~~~~~~~~~l~t~s~-d~~v~~   86 (277)
                      -.+.+..+-+.|+++.+.|.++-+   +|.+..|.+..  |+...  ....-..+...+++++++++++++.. -|.|.+
T Consensus        36 v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v  115 (346)
T COG2706          36 VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSV  115 (346)
T ss_pred             ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEE
Confidence            456777888999999999998754   47777776543  54322  12222334488999999999998875 588999


Q ss_pred             EECCC-CceeE--EeecccCc----------eeEEEEecCCCEEEEEeC-CCcEEEEeCccCCCcceEeec-cccCcEEE
Q 023772           87 WDVST-GRVIR--KFRGHESE----------VNAVKFNEYSSVVVSAGY-DQSLRAWDCRSHSTEPIQIID-SFQDSVMS  151 (277)
Q Consensus        87 wd~~~-~~~~~--~~~~h~~~----------v~~i~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~  151 (277)
                      +-+.. |.+..  ....|..+          +....+.|+++++++... --.|.+|++..+...+..... ........
T Consensus       116 ~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRH  195 (346)
T COG2706         116 YPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRH  195 (346)
T ss_pred             EEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcce
Confidence            99865 43321  23335544          788899999998888753 335899998754433222111 11222334


Q ss_pred             EEecCCe---EEEeecCCcEEEEEccCC-ccc---------ccCCC--CCeeEEEEeCCCCEEEEEe-cCCeEEEEECCC
Q 023772          152 VCLTKTE---IIGGSVDGTVRTFDIRVG-REL---------SDDLG--QPVNCISMSNDGNCILASC-LDSTLRLLDRST  215 (277)
Q Consensus       152 ~~~~~~~---~~~g~~d~~i~i~d~~~~-~~~---------~~~~~--~~v~~~~~s~~~~~l~~~~-~d~~i~~wd~~~  215 (277)
                      +.+.++.   .+..-.+++|.+|+.... .++         +....  .....+.++++|++|.++- ....|-+|.+..
T Consensus       196 i~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~  275 (346)
T COG2706         196 IVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP  275 (346)
T ss_pred             EEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence            4454443   345567889999987653 111         11111  2355678999999887652 344788887643


Q ss_pred             --CceEEEEec-cccceeeeeeEecCCCceEEeecC-CCeEEEEECc--Cccc
Q 023772          216 --GELLQEYKG-HICKSFKTDCCLTNSDAHVTGGSE-DGYIYFWDLV--DASV  262 (277)
Q Consensus       216 --~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~sgs~-d~~i~iwd~~--~~~~  262 (277)
                        +++ ..... ...........+.+.+++|+.+.. +..|.+|.++  +|++
T Consensus       276 ~~g~L-~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L  327 (346)
T COG2706         276 DGGKL-ELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRL  327 (346)
T ss_pred             CCCEE-EEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceE
Confidence              333 22221 111233566778899998877653 4458887654  4544

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.74  E-value=3.6e-05  Score=65.65  Aligned_cols=200  Identities=10%  Similarity=0.000  Sum_probs=114.2

Q ss_pred             ccEEEEEEcCCCCE-EEEEeCC---CcEEEEECCCCceeEEeecccCceeEEEEecCCCEEE-EEeCC--CcEEEEeCcc
Q 023772           61 REVRDVHVTADNSK-LISCGGD---RQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVV-SAGYD--QSLRAWDCRS  133 (277)
Q Consensus        61 ~~v~~~~~~~~~~~-l~t~s~d---~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~-s~~~d--~~i~iwd~~~  133 (277)
                      +....-.|+|+++. ++..+.+   ..|.++|+.+++...-. .....+....|+||++.++ +.+.+  ..|.++|+..
T Consensus       188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~  266 (419)
T PRK04043        188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT  266 (419)
T ss_pred             CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence            37788999999985 5544433   46899999888654322 2445556678999997654 44434  4577767655


Q ss_pred             CCCcceEeeccccCcEEEEEecCCeEEEee-cCC--cEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecC-----
Q 023772          134 HSTEPIQIIDSFQDSVMSVCLTKTEIIGGS-VDG--TVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLD-----  205 (277)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~d~--~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----  205 (277)
                      ....++..... ......+.+++..++-.+ ..+  .|.+.|+..++.......... ...|+|+|++|+..+..     
T Consensus       267 g~~~~LT~~~~-~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~-~~~~SPDG~~Ia~~~~~~~~~~  344 (419)
T PRK04043        267 KTLTQITNYPG-IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN-NSSVSTYKNYIVYSSRETNNEF  344 (419)
T ss_pred             CcEEEcccCCC-ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc-CceECCCCCEEEEEEcCCCccc
Confidence            43222211111 111223444555554433 233  466777766543221111111 24899999998777643     


Q ss_pred             ----CeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecC---CCeEEEEECcCccceeeecc
Q 023772          206 ----STLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSE---DGYIYFWDLVDASVVAKFKA  268 (277)
Q Consensus       206 ----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~---d~~i~iwd~~~~~~~~~~~~  268 (277)
                          ..|.+.|+.++.. +.+....   ......++|||+.++-.+.   ...+.+.++. |.....+..
T Consensus       345 ~~~~~~I~v~d~~~g~~-~~LT~~~---~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~-g~~~~~l~~  409 (419)
T PRK04043        345 GKNTFNLYLISTNSDYI-RRLTANG---VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN-YNKSFLFPL  409 (419)
T ss_pred             CCCCcEEEEEECCCCCe-EECCCCC---CcCCeEECCCCCEEEEEEccCCcEEEEEEecC-CCeeEEeec
Confidence                3688889887764 3333321   1223568999997765432   2236677774 444444543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.72  E-value=4.8e-06  Score=73.46  Aligned_cols=200  Identities=14%  Similarity=0.183  Sum_probs=133.0

Q ss_pred             EEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCcc-EEEEEEcCCCCEEEEEeCCC-----cEEEEECCCC------
Q 023772           25 RFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGRE-VRDVHVTADNSKLISCGGDR-----QIFYWDVSTG------   92 (277)
Q Consensus        25 ~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~t~s~d~-----~v~~wd~~~~------   92 (277)
                      ++++.+..++-|+.||.|.+.+-. -+.++.|+++... |..+....+..+|++.+.|+     .+++|+++.-      
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            456888899999999999998843 3445778887777 66666665667888888775     4899998642      


Q ss_pred             cee---EEee----cccCceeEEEEecCCCEEEEEeCCCcEEEEeCcc--CCCcceEeeccccCcEEEEEec--CCeEEE
Q 023772           93 RVI---RKFR----GHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRS--HSTEPIQIIDSFQDSVMSVCLT--KTEIIG  161 (277)
Q Consensus        93 ~~~---~~~~----~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  161 (277)
                      +++   +.+.    ..+.++.+++++.+.+.++.|-.||.|..+.-.-  ....+.........+++.+.+.  +..++-
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF  188 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF  188 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence            223   1111    1356789999999999999999999999985421  1112333344455677766654  333222


Q ss_pred             eecCCcEEEEEccCCccc----ccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEe-cccc
Q 023772          162 GSVDGTVRTFDIRVGREL----SDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYK-GHIC  227 (277)
Q Consensus       162 g~~d~~i~i~d~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~  227 (277)
                      ...-..|.+|.+. ++..    ....+.+.+|.+|++....+++++. ..+.+||....++-..|. ||..
T Consensus       189 v~Tt~~V~~y~l~-gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~kk  257 (933)
T KOG2114|consen  189 VATTEQVMLYSLS-GRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGEKK  257 (933)
T ss_pred             EEecceeEEEEec-CCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCCeE
Confidence            2334567788886 3331    2345678999999876654666544 469999987666555666 6543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.71  E-value=1.3e-05  Score=66.49  Aligned_cols=208  Identities=12%  Similarity=0.124  Sum_probs=137.4

Q ss_pred             eCCCCEEEEEeCCCcEEEEcCCCCeeEEE-Ee-----ccC-----ccEEEEE-EcC-CCCEEEEEeCCCcEEEEECCCCc
Q 023772           27 NGDGNYCLSCGKDRTIRLWNPHRGIHIKT-YK-----SHG-----REVRDVH-VTA-DNSKLISCGGDRQIFYWDVSTGR   93 (277)
Q Consensus        27 ~~~~~~l~s~s~d~~v~iwd~~~~~~~~~-~~-----~h~-----~~v~~~~-~~~-~~~~l~t~s~d~~v~~wd~~~~~   93 (277)
                      +.||+.++- +..|.|.+||+.+.+..+. +.     ...     .+..-+. |++ +|++++..| -|++.+.+...+-
T Consensus       275 nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~  352 (668)
T COG4946         275 NSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGY  352 (668)
T ss_pred             CCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCe
Confidence            467887664 6668999999887543221 10     000     1111122 333 577888776 4677777766555


Q ss_pred             eeEEeecccCceeEEEEecCCCEEEEEeCCC-cEEEEeCccCCCcceEeeccccCcEEEEEecCC--eEEEeecCCcEEE
Q 023772           94 VIRKFRGHESEVNAVKFNEYSSVVVSAGYDQ-SLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--EIIGGSVDGTVRT  170 (277)
Q Consensus        94 ~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~i  170 (277)
                      .++  .+|...|.-..+..+.+-++.|..|| .+-++|......   ..+...-+.+.++..+++  .++.+.....|-+
T Consensus       353 ~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~---kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~v  427 (668)
T COG4946         353 SIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV---KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWV  427 (668)
T ss_pred             eEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE---EEeeCCccceEEEEEcCCCcEEEEEcCceEEEE
Confidence            443  25677788777877888888899999 899999876532   233444556777776654  4666666677888


Q ss_pred             EEccCCccc--ccCCCCCeeEEEEeCCCCEEEEEecCC----eEEEEECCCCceEEEEeccccceeeeeeEecCCCceEE
Q 023772          171 FDIRVGREL--SDDLGQPVNCISMSNDGNCILASCLDS----TLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVT  244 (277)
Q Consensus       171 ~d~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d~----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  244 (277)
                      +|+.++...  ......-|...+|+|++++++-+--+|    .|+++|+..++.... +...  ..-.+.+|.|++++|.
T Consensus       428 ididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v-TT~t--a~DfsPaFD~d~ryLY  504 (668)
T COG4946         428 IDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV-TTPT--AYDFSPAFDPDGRYLY  504 (668)
T ss_pred             EEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe-cCCc--ccccCcccCCCCcEEE
Confidence            999887542  333446799999999999999987776    689999998776543 2211  2223456778888765

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.71  E-value=3.3e-05  Score=61.88  Aligned_cols=220  Identities=15%  Similarity=0.174  Sum_probs=133.8

Q ss_pred             CCcEEEEcCCCC--ee-EEEEeccCccEEEEEEcCCCCEEEEEeC---CCcEEEEECCC--Ccee--EEeecccCceeEE
Q 023772           39 DRTIRLWNPHRG--IH-IKTYKSHGREVRDVHVTADNSKLISCGG---DRQIFYWDVST--GRVI--RKFRGHESEVNAV  108 (277)
Q Consensus        39 d~~v~iwd~~~~--~~-~~~~~~h~~~v~~~~~~~~~~~l~t~s~---d~~v~~wd~~~--~~~~--~~~~~h~~~v~~i  108 (277)
                      +.-|.+|++.+.  +. ....-.+.+.++-++|+|+++.|.++..   +|.|-.|.++.  |++-  -....-..+-+-+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            678999987642  21 1223345678999999999999998854   47777776654  5432  1111122333679


Q ss_pred             EEecCCCEEEEEeC-CCcEEEEeCccC-CCcceEeeccccCc----------EEEEEecC--CeEEEee-cCCcEEEEEc
Q 023772          109 KFNEYSSVVVSAGY-DQSLRAWDCRSH-STEPIQIIDSFQDS----------VMSVCLTK--TEIIGGS-VDGTVRTFDI  173 (277)
Q Consensus       109 ~~~~~~~~l~s~~~-d~~i~iwd~~~~-~~~~~~~~~~~~~~----------~~~~~~~~--~~~~~g~-~d~~i~i~d~  173 (277)
                      ++++++++++++.. -|.|.++.++.. ..........|...          +....++|  +.+++.. .-..|.+|++
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~  174 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL  174 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence            99999999999876 478999988652 22222111112221          33334444  3444432 2346888998


Q ss_pred             cCCcccc-----cCCCCCeeEEEEeCCCCEEEE-EecCCeEEEEECCCC--c--eEEEEecc----ccceeeeeeEecCC
Q 023772          174 RVGRELS-----DDLGQPVNCISMSNDGNCILA-SCLDSTLRLLDRSTG--E--LLQEYKGH----ICKSFKTDCCLTNS  239 (277)
Q Consensus       174 ~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~-~~~d~~i~~wd~~~~--~--~~~~~~~~----~~~~~~~~~~~~~~  239 (277)
                      ..+....     ...+.-.+.|.|+|++++... .-.+++|-+|.....  +  .++.+...    ..........++++
T Consensus       175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d  254 (346)
T COG2706         175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD  254 (346)
T ss_pred             ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence            8654321     133456789999999997644 556899999998663  2  22222211    12233455668999


Q ss_pred             CceEEeec--CCCeEEEEECcC
Q 023772          240 DAHVTGGS--EDGYIYFWDLVD  259 (277)
Q Consensus       240 ~~~l~sgs--~d~~i~iwd~~~  259 (277)
                      |++|.++-  .| .|-++.+..
T Consensus       255 GrFLYasNRg~d-sI~~f~V~~  275 (346)
T COG2706         255 GRFLYASNRGHD-SIAVFSVDP  275 (346)
T ss_pred             CCEEEEecCCCC-eEEEEEEcC
Confidence            99998752  33 677776554

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.71  E-value=8.5e-07  Score=78.54  Aligned_cols=181  Identities=16%  Similarity=0.179  Sum_probs=132.7

Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEE
Q 023772           72 NSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMS  151 (277)
Q Consensus        72 ~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  151 (277)
                      ...++-|+....+-.+|+.+.+..+...-....|.=|.  .+++.+.+|...|+|.+-|+++.  +.+..+..|.+.+..
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~--~~iht~~aHs~siSD  222 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSF--ETIHTFDAHSGSISD  222 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcC--ceeeeeeccccceee
Confidence            34566677777788889988877766654444454343  34689999999999999999865  456677889999999


Q ss_pred             EEecCCeEEEeec---------CCcEEEEEccCCccccc-CCCCCeeEEEEeCCC-CEEEEEecCCeEEEEECCC-Cc-e
Q 023772          152 VCLTKTEIIGGSV---------DGTVRTFDIRVGRELSD-DLGQPVNCISMSNDG-NCILASCLDSTLRLLDRST-GE-L  218 (277)
Q Consensus       152 ~~~~~~~~~~g~~---------d~~i~i~d~~~~~~~~~-~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~wd~~~-~~-~  218 (277)
                      +...++.++++|.         |..+++||+|+.+.+.. .......-+.|+|.- ..++..+..|...+-|..+ .+ .
T Consensus       223 fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~  302 (1118)
T KOG1275|consen  223 FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP  302 (1118)
T ss_pred             eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCc
Confidence            9999999888765         55689999998776543 222223446677753 4578888899999999322 22 2


Q ss_pred             EEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEE
Q 023772          219 LQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWD  256 (277)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd  256 (277)
                      ...+..+.+.......++++.+..++-|-.+|.|.+|-
T Consensus       303 ~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  303 AGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             cceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            44455555555566778899999999999999999997

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.70  E-value=4.5e-07  Score=71.00  Aligned_cols=209  Identities=12%  Similarity=0.236  Sum_probs=126.9

Q ss_pred             CccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----eeEEeeccc------------CceeEEEEecCC--CEEEEE
Q 023772           60 GREVRDVHVTADNSKLISCGGDRQIFYWDVSTGR-----VIRKFRGHE------------SEVNAVKFNEYS--SVVVSA  120 (277)
Q Consensus        60 ~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~-----~~~~~~~h~------------~~v~~i~~~~~~--~~l~s~  120 (277)
                      ...|+++.|...|.+++||...|.|-+|.-+...     -...|+.|.            ..|+.+.|..++  ..++-.
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            3578999999999999999888999999865432     123355554            346777776553  346666


Q ss_pred             eCCCcEEEEeCccCCCc-----------------ceEe--------e----------------ccccCcEEEEEecCC-e
Q 023772          121 GYDQSLRAWDCRSHSTE-----------------PIQI--------I----------------DSFQDSVMSVCLTKT-E  158 (277)
Q Consensus       121 ~~d~~i~iwd~~~~~~~-----------------~~~~--------~----------------~~~~~~~~~~~~~~~-~  158 (277)
                      +.|.+|++|.+.....+                 ++..        +                ..|+-.+.+++++.+ +
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e  185 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE  185 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence            88999999987643110                 0000        0                011112233333322 2


Q ss_pred             EEEeecCCcEEEEEccCCcc---cccC--C-----CCCeeEEEEeCCC-CEEEEEecCCeEEEEECCCCceE----E---
Q 023772          159 IIGGSVDGTVRTFDIRVGRE---LSDD--L-----GQPVNCISMSNDG-NCILASCLDSTLRLLDRSTGELL----Q---  220 (277)
Q Consensus       159 ~~~g~~d~~i~i~d~~~~~~---~~~~--~-----~~~v~~~~~s~~~-~~l~~~~~d~~i~~wd~~~~~~~----~---  220 (277)
                      .+..+.|-.|.+|++...-.   +...  +     -.-|++..|+|.. +.+..++..|.|++-|++...+-    +   
T Consensus       186 t~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe  265 (460)
T COG5170         186 TLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFE  265 (460)
T ss_pred             eeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhh
Confidence            33345566788898864321   1111  1     1247888899965 45666788999999999843211    0   


Q ss_pred             -EEec--c----ccceeeeeeEecCCCceEEeecCCCeEEEEECcCc-cceeeeccC
Q 023772          221 -EYKG--H----ICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDA-SVVAKFKAH  269 (277)
Q Consensus       221 -~~~~--~----~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~-~~~~~~~~h  269 (277)
                       ...+  +    .....+.+..|+++|+++++-+. .+++|||++.. .+++++.-|
T Consensus       266 ~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h  321 (460)
T COG5170         266 LTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMH  321 (460)
T ss_pred             hccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechH
Confidence             1111  0    11123345678999999988654 47999998874 456666544

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.67  E-value=5e-06  Score=72.68  Aligned_cols=235  Identities=14%  Similarity=0.057  Sum_probs=150.1

Q ss_pred             EEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCC------------CEEEEEeCCCcEEEEE
Q 023772           21 VLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN------------SKLISCGGDRQIFYWD   88 (277)
Q Consensus        21 V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~------------~~l~t~s~d~~v~~wd   88 (277)
                      -.++.|++.| +++-|+. ..|.+-|..+.+.+..++.|+..|+.+.|.|..            -+|+++.-.|.|.+||
T Consensus        18 ~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d   95 (1062)
T KOG1912|consen   18 RNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD   95 (1062)
T ss_pred             ccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence            5678899887 5566554 688999999999999999999999999997642            2456666779999999


Q ss_pred             CCCCceeEEeecccCceeEEEEecC---C-CEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEe---cCCeEEE
Q 023772           89 VSTGRVIRKFRGHESEVNAVKFNEY---S-SVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCL---TKTEIIG  161 (277)
Q Consensus        89 ~~~~~~~~~~~~h~~~v~~i~~~~~---~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  161 (277)
                      ...+..+..+..|..++..+.|-+.   . .+++.-..-.++.+|+..+++.-..  .........++.+   ++.++..
T Consensus        96 ~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk--~~ys~~iLs~f~~DPfd~rh~~~  173 (1062)
T KOG1912|consen   96 FVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK--YDYSHEILSCFRVDPFDSRHFCV  173 (1062)
T ss_pred             ehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeec--cccCCcceeeeeeCCCCcceEEE
Confidence            9998888888989999999998653   3 3455555667899998876543211  1111111222333   3344444


Q ss_pred             eecCCcEEEEEccC-------Ccc--cccCCC-----------------CC------ee--EEEEeCCCCEEEEEecCCe
Q 023772          162 GSVDGTVRTFDIRV-------GRE--LSDDLG-----------------QP------VN--CISMSNDGNCILASCLDST  207 (277)
Q Consensus       162 g~~d~~i~i~d~~~-------~~~--~~~~~~-----------------~~------v~--~~~~s~~~~~l~~~~~d~~  207 (277)
                      -+..|.+.+-+.-.       +++  +...+.                 .+      ..  .++|+|.-+-++-....+.
T Consensus       174 l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pre  253 (1062)
T KOG1912|consen  174 LGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRE  253 (1062)
T ss_pred             EccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccc
Confidence            44455555443311       011  111110                 00      11  1456776544444456778


Q ss_pred             EEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcC
Q 023772          208 LRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVD  259 (277)
Q Consensus       208 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~  259 (277)
                      +.++|++-..++....-...-....++...+.-..+.....||.+-+|-.+.
T Consensus       254 llv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  254 LLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             eEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            9999998877776654332222234433344455688899999999998765

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=3.5e-06  Score=68.23  Aligned_cols=238  Identities=12%  Similarity=0.065  Sum_probs=134.1

Q ss_pred             ceeeccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCC-CEEEEEeCCCcEEEEEC
Q 023772           12 NVLKGHEGAVLAARFNGDGN-YCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN-SKLISCGGDRQIFYWDV   89 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~d~~v~~wd~   89 (277)
                      ..+.+|...|..++|+|..+ ++..++-+.+|+|.|+++......+..| ..+++++|..+. .+|+.|-..|.|.+||+
T Consensus       187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~  265 (463)
T KOG1645|consen  187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDM  265 (463)
T ss_pred             hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEc
Confidence            36778999999999999776 7888999999999999999888899888 799999999765 46788889999999999


Q ss_pred             CCCc-eeEEeec--ccCceeEEEEe------cCCCEEEEEeCCCcEEEEeCccCCCcceEee-ccccCcEEEEEecC--C
Q 023772           90 STGR-VIRKFRG--HESEVNAVKFN------EYSSVVVSAGYDQSLRAWDCRSHSTEPIQII-DSFQDSVMSVCLTK--T  157 (277)
Q Consensus        90 ~~~~-~~~~~~~--h~~~v~~i~~~------~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~--~  157 (277)
                      ..-+ ....+.+  ...+|..++.-      +.+.+++..+.+  ...|++........... -..++.+++....+  +
T Consensus       266 R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~sn  343 (463)
T KOG1645|consen  266 RQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSN  343 (463)
T ss_pred             cCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccc
Confidence            7532 2333322  23455544432      223444444333  34455432111111101 11122333332222  2


Q ss_pred             e-EEEeec--------------CCc--EEEEEccCCcccccCCCC---CeeEEEEeCCCCEEEE-EecCCeEEEEECCCC
Q 023772          158 E-IIGGSV--------------DGT--VRTFDIRVGRELSDDLGQ---PVNCISMSNDGNCILA-SCLDSTLRLLDRSTG  216 (277)
Q Consensus       158 ~-~~~g~~--------------d~~--i~i~d~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~-~~~d~~i~~wd~~~~  216 (277)
                      . +++.-.              |+.  --+|..+..  .......   .-..+.=.++.++++. +..-+.+.+||..+.
T Consensus       344 h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~--~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~  421 (463)
T KOG1645|consen  344 HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRT--YFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSF  421 (463)
T ss_pred             eEEEEecCCCCCccceeeeeeeccccCceeeeeccc--ccCCcccccccccceeccccccEEEEecCCcceeEEeccchh
Confidence            2 222211              111  011211110  0000000   0111111334455443 445568999999999


Q ss_pred             ceEEEEeccccceeeeeeEe--cCCCceEEeecCCCeEEEEECc
Q 023772          217 ELLQEYKGHICKSFKTDCCL--TNSDAHVTGGSEDGYIYFWDLV  258 (277)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~--~~~~~~l~sgs~d~~i~iwd~~  258 (277)
                      +.++++.-..   ...+.+.  .+.+.+|+.=. |..++||..+
T Consensus       422 evvQ~l~~~e---pv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e  461 (463)
T KOG1645|consen  422 EVVQTLALSE---PVLDICPNDTNGSSYLALLT-DDRVHIYKNE  461 (463)
T ss_pred             heeeecccCc---ceeecceeecCCcchhhhee-cceEEEEecC
Confidence            9999887542   2334332  23455666544 5578887654

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.65  E-value=3.2e-05  Score=72.03  Aligned_cols=230  Identities=12%  Similarity=0.118  Sum_probs=137.3

Q ss_pred             CCcEEEEEEeCCCCEEEEEeCCCcEEEE----cCCCC--eeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC-
Q 023772           18 EGAVLAARFNGDGNYCLSCGKDRTIRLW----NPHRG--IHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS-   90 (277)
Q Consensus        18 ~~~V~~~~~~~~~~~l~s~s~d~~v~iw----d~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~-   90 (277)
                      .+.|.++.|-++...++.+.++|.|-+.    +..+.  +.+..+   ...|.+++|+||+..|+.+..++++-+.+-. 
T Consensus        75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f  151 (928)
T PF04762_consen   75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV---DSGILAASWSPDEELLALVTGEGNLLLMTRDF  151 (928)
T ss_pred             CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence            4679999999999988999999999999    55443  233333   4789999999999999988888887766421 


Q ss_pred             ----------------------CCceeEEeec------------------------ccCceeEEEEecCCCEEEEEeC--
Q 023772           91 ----------------------TGRVIRKFRG------------------------HESEVNAVKFNEYSSVVVSAGY--  122 (277)
Q Consensus        91 ----------------------~~~~~~~~~~------------------------h~~~v~~i~~~~~~~~l~s~~~--  122 (277)
                                            -|+.-.+|+|                        +...-..++|-.||++++..+.  
T Consensus       152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~  231 (928)
T PF04762_consen  152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP  231 (928)
T ss_pred             eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence                                  0111111211                        1123345889999999988775  


Q ss_pred             -C---CcEEEEeCccCCCcceEeecccc--CcEEEEEecCCeEEEeec---CCcEEEEEccCCcc---c--cc-CCCCCe
Q 023772          123 -D---QSLRAWDCRSHSTEPIQIIDSFQ--DSVMSVCLTKTEIIGGSV---DGTVRTFDIRVGRE---L--SD-DLGQPV  187 (277)
Q Consensus       123 -d---~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~---d~~i~i~d~~~~~~---~--~~-~~~~~v  187 (277)
                       +   +.+++|+-. +..  ....+...  ....++.++++.+++.-.   ...|.+|+ ++|..   +  .. .....|
T Consensus       232 ~~~~~R~iRVy~Re-G~L--~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v  307 (928)
T PF04762_consen  232 ETGSRRVIRVYSRE-GEL--QSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKV  307 (928)
T ss_pred             CCCceeEEEEECCC-ceE--EeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCcee
Confidence             2   579999854 211  11111111  122334444554554432   23455555 23321   1  11 334679


Q ss_pred             eEEEEeCCCCEEEEEecCCeEEEEECCCCce--EEEEeccccceeeeeeEecCCC-ceEEeecCCCeEEEEE
Q 023772          188 NCISMSNDGNCILASCLDSTLRLLDRSTGEL--LQEYKGHICKSFKTDCCLTNSD-AHVTGGSEDGYIYFWD  256 (277)
Q Consensus       188 ~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~l~sgs~d~~i~iwd  256 (277)
                      ..+.|++++..|+.--.|. |++|-..+...  -+++.-..... ...+.++|.. ..|...+.+|.+..++
T Consensus       308 ~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~-~~~~~Wdpe~p~~L~v~t~~g~~~~~~  377 (928)
T PF04762_consen  308 IELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSES-VNFVKWDPEKPLRLHVLTSNGQYEIYD  377 (928)
T ss_pred             eEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCC-CCceEECCCCCCEEEEEecCCcEEEEE
Confidence            9999999999988877665 99999877542  22222111111 1124566643 3466666656665544

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.63  E-value=4.8e-07  Score=69.07  Aligned_cols=164  Identities=12%  Similarity=0.183  Sum_probs=100.5

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeE-EEEeccCccEEEEEEcCCCCEEEEEe-----CCCcE
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHI-KTYKSHGREVRDVHVTADNSKLISCG-----GDRQI   84 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~t~s-----~d~~v   84 (277)
                      ..++..|.++=.+-+.+-.++.++++..||.+.+.+.+.-..+ +....-...-.+.++...++.+.++.     .-+..
T Consensus        82 ~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~  161 (319)
T KOG4714|consen   82 FKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNF  161 (319)
T ss_pred             eeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccce
Confidence            3445556665544444555778899999999999997652111 11111111112223333344444432     22456


Q ss_pred             EEEECCCCceeEEeecccCceeEEEEecC-CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC---CeEE
Q 023772           85 FYWDVSTGRVIRKFRGHESEVNAVKFNEY-SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK---TEII  160 (277)
Q Consensus        85 ~~wd~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  160 (277)
                      +.|++...+...........|.+++-+|. .+++++|+.||.+-+||.+... .+...+..|...+..+.|.|   ..|+
T Consensus       162 ~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-~p~S~l~ahk~~i~eV~FHpk~p~~Lf  240 (319)
T KOG4714|consen  162 YANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-MPVSLLKAHKAEIWEVHFHPKNPEHLF  240 (319)
T ss_pred             eeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEccccc-chHHHHHHhhhhhhheeccCCCchhee
Confidence            67776544332222223345888888875 4567888899999999998752 34444556667777777754   5699


Q ss_pred             EeecCCcEEEEEccC
Q 023772          161 GGSVDGTVRTFDIRV  175 (277)
Q Consensus       161 ~g~~d~~i~i~d~~~  175 (277)
                      +++.||.+--||-.+
T Consensus       241 t~sedGslw~wdas~  255 (319)
T KOG4714|consen  241 TCSEDGSLWHWDAST  255 (319)
T ss_pred             EecCCCcEEEEcCCC
Confidence            999999999999763

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.60  E-value=1.9e-05  Score=69.88  Aligned_cols=200  Identities=15%  Similarity=0.279  Sum_probs=125.3

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCc-eeEEEEecCCCEEEEEeCCCc-----EEEEeCccCCCc--
Q 023772           66 VHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESE-VNAVKFNEYSSVVVSAGYDQS-----LRAWDCRSHSTE--  137 (277)
Q Consensus        66 ~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~-v~~i~~~~~~~~l~s~~~d~~-----i~iwd~~~~~~~--  137 (277)
                      -+|++.+..++-|+.+|.|.+.+- .-+.++.|+.+... |..+....+.+.+++.+.|++     +++|++......  
T Consensus        29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence            356788899999999998877752 23445778887776 666666666678888887765     899998643211  


Q ss_pred             --ce---Eeec------cccCcEEEEEecCCeEEEeecCCcEEEEEccC--C----cccccCCCCCeeEEEEeCCCCE-E
Q 023772          138 --PI---QIID------SFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRV--G----RELSDDLGQPVNCISMSNDGNC-I  199 (277)
Q Consensus       138 --~~---~~~~------~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~----~~~~~~~~~~v~~~~~s~~~~~-l  199 (277)
                        ..   .++.      ..+.++.++.-+-..++.|-.+|.|..+.-.-  .    .........+|+.+.+..+++. +
T Consensus       108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l  187 (933)
T KOG2114|consen  108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL  187 (933)
T ss_pred             cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence              11   1111      12223344444445588999999999875321  1    1223344679999999988876 3


Q ss_pred             EEEecCCeEEEEECCCCceE-EEEeccccceeeeeeEecCCCce-EEeecCCCeEEEEECcCccceeeec-cCcc
Q 023772          200 LASCLDSTLRLLDRSTGELL-QEYKGHICKSFKTDCCLTNSDAH-VTGGSEDGYIYFWDLVDASVVAKFK-AHSL  271 (277)
Q Consensus       200 ~~~~~d~~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-l~sgs~d~~i~iwd~~~~~~~~~~~-~h~~  271 (277)
                      +++ .-..|.+|.+....+. ..+..+   ...+.|....++.. ++.++ +..+++|+.+....--.|. +|..
T Consensus       188 Fv~-Tt~~V~~y~l~gr~p~~~~ld~~---G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk  257 (933)
T KOG2114|consen  188 FVA-TTEQVMLYSLSGRTPSLKVLDNN---GISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKK  257 (933)
T ss_pred             EEE-ecceeEEEEecCCCcceeeeccC---CccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeE
Confidence            333 3457999999744422 223333   33455544444444 44443 3379999998877666676 6654

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.57  E-value=4.6e-05  Score=66.55  Aligned_cols=233  Identities=15%  Similarity=0.182  Sum_probs=136.4

Q ss_pred             CEEEEEeCCCcEEEEcCCCCeeEEEEeccCcc-----EE-EEEEcCCCCEEEEEe---------CCCcEEEEECCCCcee
Q 023772           31 NYCLSCGKDRTIRLWNPHRGIHIKTYKSHGRE-----VR-DVHVTADNSKLISCG---------GDRQIFYWDVSTGRVI   95 (277)
Q Consensus        31 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~-----v~-~~~~~~~~~~l~t~s---------~d~~v~~wd~~~~~~~   95 (277)
                      ..++.++.|+.|.-+|..+|+.+-.+......     +. +..+.  +.+++.++         .++.+..+|.++|+.+
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~  188 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL  188 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence            57777788999999999999888776543321     11 11222  24454443         3678999999999988


Q ss_pred             EEeecccC--------------------ce-eEEEEecCCCEEEEEeCCC------------------cEEEEeCccCCC
Q 023772           96 RKFRGHES--------------------EV-NAVKFNEYSSVVVSAGYDQ------------------SLRAWDCRSHST  136 (277)
Q Consensus        96 ~~~~~h~~--------------------~v-~~i~~~~~~~~l~s~~~d~------------------~i~iwd~~~~~~  136 (277)
                      ..+.....                    .+ .+..+.+.+.+++.++.|+                  .+.-.|..+.+.
T Consensus       189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~  268 (488)
T cd00216         189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV  268 (488)
T ss_pred             eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence            77654211                    11 1234444556777776665                  677778776544


Q ss_pred             cceEeecccc--------CcE-EEEE-ecCC---eEEEeecCCcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEE-
Q 023772          137 EPIQIIDSFQ--------DSV-MSVC-LTKT---EIIGGSVDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILAS-  202 (277)
Q Consensus       137 ~~~~~~~~~~--------~~~-~~~~-~~~~---~~~~g~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-  202 (277)
                      ........+.        .++ ..+. .++.   .++.++.+|.+...|.++++.+-..... ...+..+| + .+..+ 
T Consensus       269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-~~~~~~~~-~-~vyv~~  345 (488)
T cd00216         269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-EQPMAYDP-G-LVYLGA  345 (488)
T ss_pred             EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-ccccccCC-c-eEEEcc
Confidence            3222111110        011 1111 1222   3667888999999999998765432100 11223344 2 22222 


Q ss_pred             -----------------ecCCeEEEEECCCCceEEEEeccccc------eeeeeeEecCCCceEEeecCCCeEEEEECcC
Q 023772          203 -----------------CLDSTLRLLDRSTGELLQEYKGHICK------SFKTDCCLTNSDAHVTGGSEDGYIYFWDLVD  259 (277)
Q Consensus       203 -----------------~~d~~i~~wd~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~  259 (277)
                                       ..+|.+.-.|+.+|+.+.........      .......+...+..|+.|+.||.++.+|..+
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~t  425 (488)
T cd00216         346 FHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATT  425 (488)
T ss_pred             ccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCC
Confidence                             24678889999999888766432100      0000011122456788889999999999999


Q ss_pred             ccceeeecc
Q 023772          260 ASVVAKFKA  268 (277)
Q Consensus       260 ~~~~~~~~~  268 (277)
                      |+.+-+++-
T Consensus       426 G~~lW~~~~  434 (488)
T cd00216         426 GKELWKFRT  434 (488)
T ss_pred             CceeeEEEC
Confidence            999877663

The alignment model contains an 8-bladed beta-propeller.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.56  E-value=1.8e-05  Score=69.57  Aligned_cols=181  Identities=13%  Similarity=0.169  Sum_probs=126.5

Q ss_pred             CcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe
Q 023772           19 GAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKF   98 (277)
Q Consensus        19 ~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~   98 (277)
                      ..+.|++++  ++.++-|..+|.+.+.+.. +.. ++...|+..      ..+|.+++|||.||+|.+-.+-+.+...++
T Consensus        40 D~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~  109 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY  109 (846)
T ss_pred             hHHHHHHhh--cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence            445556555  5688899999999999854 333 333345433      678999999999999999999888776655


Q ss_pred             ecccCceeEEEEecC-----CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCCcEEEEEc
Q 023772           99 RGHESEVNAVKFNEY-----SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDI  173 (277)
Q Consensus        99 ~~h~~~v~~i~~~~~-----~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~  173 (277)
                      . -..++.+++++|+     .+.+++||.-| +.++.-+=.............+++.++.+.++.++=+..+| +++||.
T Consensus       110 d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~lIAWand~G-v~vyd~  186 (846)
T KOG2066|consen  110 D-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGNLIAWANDDG-VKVYDT  186 (846)
T ss_pred             e-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCcEEEEecCCC-cEEEec
Confidence            5 3568899999997     56899999988 77775321111112235566788999999998887666555 899999


Q ss_pred             cCCcccccC---C-----CCCeeEEEEeCCCCEEEEEecCCeEEEEECC
Q 023772          174 RVGRELSDD---L-----GQPVNCISMSNDGNCILASCLDSTLRLLDRS  214 (277)
Q Consensus       174 ~~~~~~~~~---~-----~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~  214 (277)
                      ...+.+...   .     ..-...+.|.++.+ |+.| ...+|++..++
T Consensus       187 ~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~  233 (846)
T KOG2066|consen  187 PTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIK  233 (846)
T ss_pred             cccceeeccCCCCCCCCcccCCCceEecCCCe-EEEe-cCCeEEEEEEe
Confidence            877654221   1     11234577887664 5665 44478888876

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.51  E-value=1e-07  Score=84.04  Aligned_cols=196  Identities=18%  Similarity=0.226  Sum_probs=130.2

Q ss_pred             ceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCC--cEEEEEC
Q 023772           12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDR--QIFYWDV   89 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~--~v~~wd~   89 (277)
                      ..++-|...-+|++|+.+.+.|+.|+..|.|++++..+|.-.....+|+.+|+-+.=+.++..+++.+.-.  -..+|++
T Consensus      1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred             hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcc
Confidence            34567888999999999999999999999999999999998899999999999999999998887765433  4789998


Q ss_pred             CC-CceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEe-ecc---ccCcEEEEEecCCe-EEEee
Q 023772           90 ST-GRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQI-IDS---FQDSVMSVCLTKTE-IIGGS  163 (277)
Q Consensus        90 ~~-~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~-~~~g~  163 (277)
                      .+ +.+.++|..-    .++.|+.....-+.|..-....+||+.+..+  .+. +..   .+-.-....++|.. ++  -
T Consensus      1175 ~s~~~~~Hsf~ed----~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~--l~tylt~~~~~~y~~n~a~FsP~D~LI--l 1246 (1516)
T KOG1832|consen 1175 SSTGGPRHSFDED----KAVKFSNSLQFRALGTEADDALLYDVQTCSP--LQTYLTDTVTSSYSNNLAHFSPCDTLI--L 1246 (1516)
T ss_pred             ccccCcccccccc----ceeehhhhHHHHHhcccccceEEEecccCcH--HHHhcCcchhhhhhccccccCCCcceE--e
Confidence            64 5566666532    3466765533333333445678899876542  221 110   00001122333322 11  1


Q ss_pred             cCCcEEEEEccCCcccccCCCC-CeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEE
Q 023772          164 VDGTVRTFDIRVGRELSDDLGQ-PVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEY  222 (277)
Q Consensus       164 ~d~~i~i~d~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~  222 (277)
                      .||.  +||.|..+.+...-.- .--.-.|+|.|+.++..+     .|||+++.+.++..
T Consensus      1247 ndGv--LWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1247 NDGV--LWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSV 1299 (1516)
T ss_pred             eCce--eeeeccHHHHhhhhhheecccccccCCCceEEeec-----hhhhhHHHHHHhcC
Confidence            2342  6999887655332111 112346999999998876     58999987766543

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.51  E-value=5.5e-06  Score=72.61  Aligned_cols=153  Identities=16%  Similarity=0.278  Sum_probs=105.8

Q ss_pred             eeccCCcEEEEEEeCC-------------CCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCC-----CCEE
Q 023772           14 LKGHEGAVLAARFNGD-------------GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTAD-----NSKL   75 (277)
Q Consensus        14 l~~H~~~V~~~~~~~~-------------~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~-----~~~l   75 (277)
                      |..|.+.|.-..+..+             |++++|||.||++.|-.+.+.+...++.-+ .++.+++++|+     .+.+
T Consensus        54 ~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~-rpiksial~Pd~~~~~sk~f  132 (846)
T KOG2066|consen   54 LGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYDFK-RPIKSIALHPDFSRQQSKQF  132 (846)
T ss_pred             eccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEecC-CcceeEEeccchhhhhhhhe
Confidence            4568888877766555             999999999999999988887766665543 69999999998     5789


Q ss_pred             EEEeCCCcEEEEECCC---CceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeecccc------
Q 023772           76 ISCGGDRQIFYWDVST---GRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQ------  146 (277)
Q Consensus        76 ~t~s~d~~v~~wd~~~---~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~------  146 (277)
                      ++||..| +.++.-.-   ...+ .+..-.++|.++.|.  ++++|-++.+| |++||......  +..+....      
T Consensus       133 v~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~--l~~i~~p~~~~R~e  205 (846)
T KOG2066|consen  133 VSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQR--LTNIPPPSQSVRPE  205 (846)
T ss_pred             eecCcce-EEEehhhhhcCccce-eeecCccceEEEEec--CcEEEEecCCC-cEEEeccccce--eeccCCCCCCCCcc
Confidence            9999888 77765332   1111 244457899999998  67999998888 89999865321  11111100      


Q ss_pred             CcEEEEEecCCeEEEeecCCcEEEEEcc
Q 023772          147 DSVMSVCLTKTEIIGGSVDGTVRTFDIR  174 (277)
Q Consensus       147 ~~~~~~~~~~~~~~~g~~d~~i~i~d~~  174 (277)
                      ..-..+.|.+..-++-|...+|++..++
T Consensus       206 ~fpphl~W~~~~~LVIGW~d~v~i~~I~  233 (846)
T KOG2066|consen  206 LFPPHLHWQDEDRLVIGWGDSVKICSIK  233 (846)
T ss_pred             cCCCceEecCCCeEEEecCCeEEEEEEe
Confidence            1112334445555566777788888877

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.46  E-value=0.00039  Score=55.07  Aligned_cols=198  Identities=14%  Similarity=0.094  Sum_probs=115.7

Q ss_pred             EEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEe-cCCCEEEEEeCCCcEEEEeCccCCCcceEee
Q 023772           65 DVHVTA-DNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFN-EYSSVVVSAGYDQSLRAWDCRSHSTEPIQII  142 (277)
Q Consensus        65 ~~~~~~-~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  142 (277)
                      +..|.+ ++.++++--..+.|..|+..+++... +.. .. ..++.+. +++.+ +.+..++ +.++|+.+.....+...
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~-~~-~~G~~~~~~~g~l-~v~~~~~-~~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDL-PG-PNGMAFDRPDGRL-YVADSGG-IAVVDPDTGKVTVLADL   78 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EES-SS-EEEEEEECTTSEE-EEEETTC-EEEEETTTTEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Eec-CC-CceEEEEccCCEE-EEEEcCc-eEEEecCCCcEEEEeec
Confidence            567887 55566666678999999998876532 221 12 6677887 56544 4445544 55568776543333322


Q ss_pred             c--c-ccCcEEEEEecCCe-EEEeec-C--------CcEEEEEccCCccc-ccCCCCCeeEEEEeCCCCEEE-EEecCCe
Q 023772          143 D--S-FQDSVMSVCLTKTE-IIGGSV-D--------GTVRTFDIRVGREL-SDDLGQPVNCISMSNDGNCIL-ASCLDST  207 (277)
Q Consensus       143 ~--~-~~~~~~~~~~~~~~-~~~g~~-d--------~~i~i~d~~~~~~~-~~~~~~~v~~~~~s~~~~~l~-~~~~d~~  207 (277)
                      .  . .......+.++++. ++.+.. .        +.+..++.. ++.. ....-...+.++|+|+++.|. +-+..+.
T Consensus        79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~  157 (246)
T PF08450_consen   79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGR  157 (246)
T ss_dssp             ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTE
T ss_pred             cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccce
Confidence            1  1 22344555555544 443322 1        345566655 2211 111224578999999998765 6677888


Q ss_pred             EEEEECCCC-c-e--EEEEec-cccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccC
Q 023772          208 LRLLDRSTG-E-L--LQEYKG-HICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAH  269 (277)
Q Consensus       208 i~~wd~~~~-~-~--~~~~~~-~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h  269 (277)
                      |..|++... . .  .+.+.. .......--.++..+|++.++....+.|.++|.+ |+++..+.-.
T Consensus       158 i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p  223 (246)
T PF08450_consen  158 IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP  223 (246)
T ss_dssp             EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S
T ss_pred             eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC
Confidence            999998532 2 1  122211 1111123446677888887777778899999988 9988888754

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.41  E-value=0.00058  Score=54.72  Aligned_cols=197  Identities=15%  Similarity=0.114  Sum_probs=109.9

Q ss_pred             EEEeC-CCCEEEEEeCCCc-EEEEcCCCCeeEEEEeccCccE--EEEEEcCCCCEEEEEeC-----CCcEEEEECC-CCc
Q 023772           24 ARFNG-DGNYCLSCGKDRT-IRLWNPHRGIHIKTYKSHGREV--RDVHVTADNSKLISCGG-----DRQIFYWDVS-TGR   93 (277)
Q Consensus        24 ~~~~~-~~~~l~s~s~d~~-v~iwd~~~~~~~~~~~~h~~~v--~~~~~~~~~~~l~t~s~-----d~~v~~wd~~-~~~   93 (277)
                      ++.+| .+..++-+-.-|+ +-+||..+++....+....+.-  ---.|++++++|+|.-.     .|.|-|||.. +-+
T Consensus        10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~   89 (305)
T PF07433_consen   10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYR   89 (305)
T ss_pred             eeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcE
Confidence            44455 3333334433333 4567887777666554322221  13679999999999754     4789999998 567


Q ss_pred             eeEEeecccCceeEEEEecCCCEEEEEeC-------CCcEEEEeCccCCCcce------------Eee--ccccCcEEEE
Q 023772           94 VIRKFRGHESEVNAVKFNEYSSVVVSAGY-------DQSLRAWDCRSHSTEPI------------QII--DSFQDSVMSV  152 (277)
Q Consensus        94 ~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-------d~~i~iwd~~~~~~~~~------------~~~--~~~~~~~~~~  152 (277)
                      .+.+|..|.-.-..+.+.|+++.|+.+..       .|.-++ |+.+.++...            ..+  ..++.++..+
T Consensus        90 ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL-Nl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHL  168 (305)
T PF07433_consen   90 RIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL-NLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHL  168 (305)
T ss_pred             EEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec-ChhhcCCceEEEecCCCceeeeeecCccccccceeeE
Confidence            78888887766677889999977666532       122222 2222111101            011  1123334444


Q ss_pred             EecCCeE-EEeec-CCc-------EEEEEccCCccc---------ccCCCCCeeEEEEeCCCCEEEEEe-cCCeEEEEEC
Q 023772          153 CLTKTEI-IGGSV-DGT-------VRTFDIRVGREL---------SDDLGQPVNCISMSNDGNCILASC-LDSTLRLLDR  213 (277)
Q Consensus       153 ~~~~~~~-~~g~~-d~~-------i~i~d~~~~~~~---------~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~wd~  213 (277)
                      .++++.. +.|.. .+.       +-+++  .++.+         ......-+-++++++++.+++++| .-+.+.+||.
T Consensus       169 a~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~  246 (305)
T PF07433_consen  169 AVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDA  246 (305)
T ss_pred             EecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEEC
Confidence            4433321 11111 110       11111  11111         112234588999999998886666 4568889999


Q ss_pred             CCCceEEEEe
Q 023772          214 STGELLQEYK  223 (277)
Q Consensus       214 ~~~~~~~~~~  223 (277)
                      .+++++....
T Consensus       247 ~tg~~~~~~~  256 (305)
T PF07433_consen  247 ATGRLLGSVP  256 (305)
T ss_pred             CCCCEeeccc
Confidence            9999887654

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.34  E-value=0.00038  Score=55.73  Aligned_cols=182  Identities=15%  Similarity=0.249  Sum_probs=118.0

Q ss_pred             EEEeCCCCEEEEE-----eCCCcEEEEcCC-CCeeEEEEeccCccEEEEEEcCCCCEEEEEe------------------
Q 023772           24 ARFNGDGNYCLSC-----GKDRTIRLWNPH-RGIHIKTYKSHGREVRDVHVTADNSKLISCG------------------   79 (277)
Q Consensus        24 ~~~~~~~~~l~s~-----s~d~~v~iwd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s------------------   79 (277)
                      -.|++||++|++.     ...|.|-|||.. ....+.+|..|.-....+.+.|+++.|+.+-                  
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t  135 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT  135 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence            6799999999986     334899999998 6677888988888888999999998777652                  


Q ss_pred             CCCcEEEEECCCCceeEE--e--ecccCceeEEEEecCCCEEEEEeCCCc-------EEEEeCccCCCcce----Eeecc
Q 023772           80 GDRQIFYWDVSTGRVIRK--F--RGHESEVNAVKFNEYSSVVVSAGYDQS-------LRAWDCRSHSTEPI----QIIDS  144 (277)
Q Consensus        80 ~d~~v~~wd~~~~~~~~~--~--~~h~~~v~~i~~~~~~~~l~s~~~d~~-------i~iwd~~~~~~~~~----~~~~~  144 (277)
                      .+-++.+.|..+|+++.+  +  ..|...+.-+++.+++..++..-..|.       +-+++.... ....    .....
T Consensus       136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~p~~~~~~  214 (305)
T PF07433_consen  136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA-LRLLPAPEEQWRR  214 (305)
T ss_pred             cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc-ceeccCChHHHHh
Confidence            112455667778887766  4  337788988999998877766544443       222221110 0000    00112


Q ss_pred             ccCcEEEEEecCC--eE-EEeecCCcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecCCeE
Q 023772          145 FQDSVMSVCLTKT--EI-IGGSVDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTL  208 (277)
Q Consensus       145 ~~~~~~~~~~~~~--~~-~~g~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i  208 (277)
                      ....+-++.++..  .+ +++=..+.+.+||..+++.+....-..+..++-.+++ ++++ +..|.+
T Consensus       215 l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~~-f~~s-sG~G~~  279 (305)
T PF07433_consen  215 LNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDACGVAPTDDG-FLVS-SGQGQL  279 (305)
T ss_pred             hCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCceeeeeecCCc-eEEe-CCCccE
Confidence            3455667777654  34 3444567899999998876655444456666666666 4444 445544

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.34  E-value=4.4e-06  Score=70.97  Aligned_cols=76  Identities=11%  Similarity=0.134  Sum_probs=65.2

Q ss_pred             ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 023772           16 GHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGR   93 (277)
Q Consensus        16 ~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~   93 (277)
                      .....|.+++++|+.+.++.|+.||+|.+||..++...  +..+.-.++.++|+|++..++.|+..|.+.+||+.-+.
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence            46788999999999999999999999999998776433  33345678999999999999999999999999986544

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.30  E-value=2.6e-05  Score=66.45  Aligned_cols=113  Identities=13%  Similarity=0.106  Sum_probs=81.1

Q ss_pred             CcEEEEEEeC-CCCEEEE----EeCCCcE----EEEcCCCCeeEE---EEeccCccEEEEEEcCCCCEEEEEeCCCcEEE
Q 023772           19 GAVLAARFNG-DGNYCLS----CGKDRTI----RLWNPHRGIHIK---TYKSHGREVRDVHVTADNSKLISCGGDRQIFY   86 (277)
Q Consensus        19 ~~V~~~~~~~-~~~~l~s----~s~d~~v----~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~   86 (277)
                      ....++.|+. +...+.|    .+.+|.+    .+|+...++..+   +--.....+.+++++|+.++++.|..||+|.+
T Consensus       206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL  285 (545)
T PF11768_consen  206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL  285 (545)
T ss_pred             CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence            3345777776 3444443    3555554    345544332211   11235678999999999999999999999999


Q ss_pred             EECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCcc
Q 023772           87 WDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRS  133 (277)
Q Consensus        87 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~  133 (277)
                      ||...+..  .+..+.-..+.++|+|++.+++.|+..|.+.+||+.-
T Consensus       286 yD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  286 YDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             EEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            99876633  2334556678899999999999999999999999864

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.28  E-value=4.7e-05  Score=66.05  Aligned_cols=153  Identities=10%  Similarity=0.079  Sum_probs=108.5

Q ss_pred             cCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEE-EeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 023772           17 HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKT-YKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVI   95 (277)
Q Consensus        17 H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~   95 (277)
                      |...|.--+++..+++++-|+.-|.+.+|+-..+..... ..+..+.+..+.++++..+++.|+..|.|.++-+..+.+.
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence            556666677788899999999999999999877654333 3334456667778888888888899999999988764321


Q ss_pred             -----EEe-ecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCC--CcceEeeccccCcEEEEEecCCeEEEeecCCc
Q 023772           96 -----RKF-RGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHS--TEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGT  167 (277)
Q Consensus        96 -----~~~-~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~  167 (277)
                           ..+ +.|...|+++.|++++..+++|..-|+|..-.+....  .-+.+.+......|..+......++..+.-+.
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r~  191 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTRC  191 (726)
T ss_pred             cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHhhhhhh
Confidence                 111 2378999999999999999999999999988876521  11233333445566666655555555554444


Q ss_pred             EE
Q 023772          168 VR  169 (277)
Q Consensus       168 i~  169 (277)
                      +.
T Consensus       192 ~L  193 (726)
T KOG3621|consen  192 IL  193 (726)
T ss_pred             he
Confidence            43

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.27  E-value=0.0015  Score=60.46  Aligned_cols=196  Identities=14%  Similarity=0.144  Sum_probs=121.5

Q ss_pred             CcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEEC----CC---
Q 023772           19 GAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDV----ST---   91 (277)
Q Consensus        19 ~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~----~~---   91 (277)
                      +.|.++.|-.++..++-+..+|.|.+-|..+... .....-...|.++.|+|+.+.++-...++++.+-+-    -.   
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~  147 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP  147 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence            5799999999999888889999999999877532 222234578999999999999888877777655442    00   


Q ss_pred             ----------------CceeEEeeccc---------------------CceeEEEEecCCCEEEEE-----eCCCcEEEE
Q 023772           92 ----------------GRVIRKFRGHE---------------------SEVNAVKFNEYSSVVVSA-----GYDQSLRAW  129 (277)
Q Consensus        92 ----------------~~~~~~~~~h~---------------------~~v~~i~~~~~~~~l~s~-----~~d~~i~iw  129 (277)
                                      |+.-..|++..                     +.=.+|.|--||++++..     ...+.|++|
T Consensus       148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~  227 (1265)
T KOG1920|consen  148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY  227 (1265)
T ss_pred             cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence                            11111232110                     111348888899998883     333899999


Q ss_pred             eCccCCCcceEeeccccCcEEEEEecCCeEEEe---ecCCcEEEEEccC---Cc-ccccCCCC-CeeEEEEeCCCCEEEE
Q 023772          130 DCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGG---SVDGTVRTFDIRV---GR-ELSDDLGQ-PVNCISMSNDGNCILA  201 (277)
Q Consensus       130 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~d~~i~i~d~~~---~~-~~~~~~~~-~v~~~~~s~~~~~l~~  201 (277)
                      |-. +................+..+++..+++-   ..|+.|.+|.-..   +. .+....+. ++..++|+.++..|+.
T Consensus       228 drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv  306 (1265)
T KOG1920|consen  228 DRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAV  306 (1265)
T ss_pred             ccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceee
Confidence            965 21111111111222334444444444443   3456788887421   11 12223333 4899999999998877


Q ss_pred             ---EecCCeEEEEECCCC
Q 023772          202 ---SCLDSTLRLLDRSTG  216 (277)
Q Consensus       202 ---~~~d~~i~~wd~~~~  216 (277)
                         ......|++|-..+.
T Consensus       307 ~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  307 VTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             eecccccceEEEEEecCe
Confidence               445556999998764

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.24  E-value=0.00029  Score=63.76  Aligned_cols=140  Identities=23%  Similarity=0.358  Sum_probs=93.2

Q ss_pred             CCEEEEE-eCCCcEEEEECCCCceeEEeecccCc-eeEEEEec-----CCCEEEEEeCCCcEEEEeCccCCCcceEe-ec
Q 023772           72 NSKLISC-GGDRQIFYWDVSTGRVIRKFRGHESE-VNAVKFNE-----YSSVVVSAGYDQSLRAWDCRSHSTEPIQI-ID  143 (277)
Q Consensus        72 ~~~l~t~-s~d~~v~~wd~~~~~~~~~~~~h~~~-v~~i~~~~-----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~  143 (277)
                      .++|+.. .....++-.|++.|+++..+..|... |..++-..     .....+.|-.+..+..||+|......+.. ..
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k  572 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK  572 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence            3444443 35678999999999999999988654 65554332     13345667888899999998653221210 10


Q ss_pred             --cccCcEEEEEecC-CeEEEeecCCcEEEEEccCCcc---cccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEEC
Q 023772          144 --SFQDSVMSVCLTK-TEIIGGSVDGTVRTFDIRVGRE---LSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDR  213 (277)
Q Consensus       144 --~~~~~~~~~~~~~-~~~~~g~~d~~i~i~d~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~  213 (277)
                        .......+++.+. .++++|+.+|.||+||- .+..   .....+.||..++.+.||+|+++.+. ..|-|++.
T Consensus       573 ~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t  646 (794)
T PF08553_consen  573 QYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT  646 (794)
T ss_pred             ccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence              1112233344443 45999999999999993 3332   22245789999999999999988764 46777774

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>smart00320 WD40 WD40 repeats

Probab=98.13  E-value=7.3e-06  Score=43.68  Aligned_cols=36  Identities=44%  Similarity=0.827  Sum_probs=32.8

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEc
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWN   46 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd   46 (277)
                      ...+.+|...|.++.|.+++.++++++.|+.+++|+
T Consensus         5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            455678999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.09  E-value=2.1e-06  Score=73.48  Aligned_cols=192  Identities=13%  Similarity=0.100  Sum_probs=118.3

Q ss_pred             cEEEEEEeCCC--CEEEEEeCCCcEEEEcCCCCee--EEEEeccCccEEEEEEcCC-CCEEEEEe----CCCcEEEEECC
Q 023772           20 AVLAARFNGDG--NYCLSCGKDRTIRLWNPHRGIH--IKTYKSHGREVRDVHVTAD-NSKLISCG----GDRQIFYWDVS   90 (277)
Q Consensus        20 ~V~~~~~~~~~--~~l~s~s~d~~v~iwd~~~~~~--~~~~~~h~~~v~~~~~~~~-~~~l~t~s----~d~~v~~wd~~   90 (277)
                      -+.|++++.+.  ..++.|.++|.|-+=......-  -....+|..++++++|++- .+.|++|-    .|..+++||.+
T Consensus        58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~  137 (783)
T KOG1008|consen   58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN  137 (783)
T ss_pred             CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence            46677765543  4667889999998876543211  2345667889999999874 34555542    45689999998


Q ss_pred             CC--ceeEE--eec-ccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeec--cccCcEEEEEecCCeEEEee
Q 023772           91 TG--RVIRK--FRG-HESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIID--SFQDSVMSVCLTKTEIIGGS  163 (277)
Q Consensus        91 ~~--~~~~~--~~~-h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~  163 (277)
                      ++  .+..+  |.. -....++++|..+.+++++|...+.+.++|++.... ....+.  .+++ +..=.+.++++.+ .
T Consensus       138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-~~~svnTk~vqG-~tVdp~~~nY~cs-~  214 (783)
T KOG1008|consen  138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-SVSSVNTKYVQG-ITVDPFSPNYFCS-N  214 (783)
T ss_pred             cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh-hhhhhhhhhccc-ceecCCCCCceec-c
Confidence            76  22221  222 334556788888899999999999999999984321 111111  1111 1111224555544 4


Q ss_pred             cCCcEEEEE-ccCCcccc----c---CCCCCeeEEEEeCCCC-EEEE-EecCCeEEEEECC
Q 023772          164 VDGTVRTFD-IRVGRELS----D---DLGQPVNCISMSNDGN-CILA-SCLDSTLRLLDRS  214 (277)
Q Consensus       164 ~d~~i~i~d-~~~~~~~~----~---~~~~~v~~~~~s~~~~-~l~~-~~~d~~i~~wd~~  214 (277)
                      .|+.|.+|| .+..+...    .   .....+..++|.|... .+++ .-..++|+++|+.
T Consensus       215 ~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  215 SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            599999999 44332211    1   1123578899998542 2333 3456689999974

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=98.07  E-value=8.2e-06  Score=61.48  Aligned_cols=142  Identities=16%  Similarity=0.208  Sum_probs=83.9

Q ss_pred             CEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCCcEEEEEccCCcccccC---CCCCeeEEE
Q 023772          115 SVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDD---LGQPVNCIS  191 (277)
Q Consensus       115 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~---~~~~v~~~~  191 (277)
                      ..+...+.||.+.-++++.... ..+.-..+... ..+.-....+++|+.+|.|.+|+....-.....   ...++-++-
T Consensus        31 ~~l~~~sa~~~v~~~~~~k~k~-s~rse~~~~e~-~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I  108 (238)
T KOG2444|consen   31 HLLRATSADGLVRERKVRKHKE-SCRSERFIDEG-QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI  108 (238)
T ss_pred             hhhccccCCcccccchhhhhhh-hhhhhhhhhcc-eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence            3455567889999888765321 11111111111 333334556899999999999987632222211   122333322


Q ss_pred             -EeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEee--cCCCeEEEEECcC
Q 023772          192 -MSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGG--SEDGYIYFWDLVD  259 (277)
Q Consensus       192 -~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg--s~d~~i~iwd~~~  259 (277)
                       --.++.+..+++.|+.||.|+...++.+....+|.... ......+..+++++.+  |.|..++.|++..
T Consensus       109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~-~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFES-GEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ccccccceeEEeccCCceeeeccccCceeeeeccccCCC-cceeEEecCCceEEeeccccchhhhhcchhh
Confidence             22345678889999999999999888775554454211 2222334446667766  8888888888754

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.05  E-value=0.0049  Score=54.02  Aligned_cols=191  Identities=17%  Similarity=0.178  Sum_probs=108.9

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCeeEEEEeccCc------cEE--EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecc
Q 023772           30 GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGR------EVR--DVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGH  101 (277)
Q Consensus        30 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~------~v~--~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h  101 (277)
                      +..++.++.|+.+.-.|..+|+.+-.++....      .+.  .+.+. ++.+++.++.++.|.-+|.++|+.+..+...
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~  139 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN  139 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence            44666778889999999999987766543322      010  11111 2267888889999999999999998776543


Q ss_pred             cCc-----e-eEEEEecCCCEEEEEe---------CCCcEEEEeCccCCCcceEeecccc------------------Cc
Q 023772          102 ESE-----V-NAVKFNEYSSVVVSAG---------YDQSLRAWDCRSHSTEPIQIIDSFQ------------------DS  148 (277)
Q Consensus       102 ~~~-----v-~~i~~~~~~~~l~s~~---------~d~~i~iwd~~~~~~~~~~~~~~~~------------------~~  148 (277)
                      ...     + .+..+.  +.+++.++         .++.+..+|..+.............                  ..
T Consensus       140 ~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~  217 (488)
T cd00216         140 DQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT  217 (488)
T ss_pred             CCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence            221     1 111222  23444443         3577888887765432221111000                  00


Q ss_pred             ---EEEEEecCCeEEEeecCC------------------cEEEEEccCCcccccCC-C-CCe------eEEEEe----CC
Q 023772          149 ---VMSVCLTKTEIIGGSVDG------------------TVRTFDIRVGRELSDDL-G-QPV------NCISMS----ND  195 (277)
Q Consensus       149 ---~~~~~~~~~~~~~g~~d~------------------~i~i~d~~~~~~~~~~~-~-~~v------~~~~~s----~~  195 (277)
                         ...+......++.++.++                  .+.-+|..+++..-... . ...      ....+.    -+
T Consensus       218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~  297 (488)
T cd00216         218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKD  297 (488)
T ss_pred             ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccC
Confidence               011222234566666554                  57778888876542211 0 000      000111    13


Q ss_pred             CC---EEEEEecCCeEEEEECCCCceEEEEe
Q 023772          196 GN---CILASCLDSTLRLLDRSTGELLQEYK  223 (277)
Q Consensus       196 ~~---~l~~~~~d~~i~~wd~~~~~~~~~~~  223 (277)
                      |.   .++.++.+|.++..|.++|+.+..+.
T Consensus       298 g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~  328 (488)
T cd00216         298 GKPVPAIVHAPKNGFFYVLDRTTGKLISARP  328 (488)
T ss_pred             CCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence            33   57788899999999999999987654

The alignment model contains an 8-bladed beta-propeller.

>PHA02713 hypothetical protein; Provisional

Probab=98.02  E-value=0.00088  Score=59.52  Aligned_cols=225  Identities=8%  Similarity=0.018  Sum_probs=110.6

Q ss_pred             cEEEEcCCCCeeEEEEeccCcc-EEEEEEcCCCCEEEEEeCC------CcEEEEECCCCc--eeEEeecccCceeEEEEe
Q 023772           41 TIRLWNPHRGIHIKTYKSHGRE-VRDVHVTADNSKLISCGGD------RQIFYWDVSTGR--VIRKFRGHESEVNAVKFN  111 (277)
Q Consensus        41 ~v~iwd~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~t~s~d------~~v~~wd~~~~~--~~~~~~~h~~~v~~i~~~  111 (277)
                      .+..||+.+++....-.-.... -.+++. .++..++.||.+      ..+..||..++.  .+..+....... ++ ..
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~-~~  349 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SL-AV  349 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eE-EE
Confidence            5677888776543221111111 122222 356667777754      346778876653  121121111111 12 22


Q ss_pred             cCCCEEEEEeCCC-----cEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecC---------------------
Q 023772          112 EYSSVVVSAGYDQ-----SLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVD---------------------  165 (277)
Q Consensus       112 ~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d---------------------  165 (277)
                      -++++.+.||.++     ++..||+.+..-.....+.........+..++.-.+.|+.+                     
T Consensus       350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~  429 (557)
T PHA02713        350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTH  429 (557)
T ss_pred             ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccccccc
Confidence            3466777787764     47888876532111111111111112233444445556554                     


Q ss_pred             --CcEEEEEccCCc--ccccCCCCCee-EEEEeCCCCEEEEEecC------CeEEEEECCC-CceEEEEeccccceeeee
Q 023772          166 --GTVRTFDIRVGR--ELSDDLGQPVN-CISMSNDGNCILASCLD------STLRLLDRST-GELLQEYKGHICKSFKTD  233 (277)
Q Consensus       166 --~~i~i~d~~~~~--~~~~~~~~~v~-~~~~s~~~~~l~~~~~d------~~i~~wd~~~-~~~~~~~~~~~~~~~~~~  233 (277)
                        ..+..||.++.+  .+......... +++ .-+|+.++.|+.+      ..+..||..+ ++... ........... 
T Consensus       430 ~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~-~~~m~~~r~~~-  506 (557)
T PHA02713        430 SSNKVIRYDTVNNIWETLPNFWTGTIRPGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWEL-ITTTESRLSAL-  506 (557)
T ss_pred             ccceEEEECCCCCeEeecCCCCcccccCcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeE-ccccCcccccc-
Confidence              246678876643  11111111111 122 2256667777654      2467899887 44332 11111111111 


Q ss_pred             eEecCCCceEEeecCCC--eEEEEECcCccceeeeccCcc
Q 023772          234 CCLTNSDAHVTGGSEDG--YIYFWDLVDASVVAKFKAHSL  271 (277)
Q Consensus       234 ~~~~~~~~~l~sgs~d~--~i~iwd~~~~~~~~~~~~h~~  271 (277)
                      .+..-+++..+.|+.|+  .+..||..+.+.......|+.
T Consensus       507 ~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~~  546 (557)
T PHA02713        507 HTILHDNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHSN  546 (557)
T ss_pred             eeEEECCEEEEEeeecceeehhhcCcccccccchhhhcCC
Confidence            12223677777888787  788999999988877777753

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.99  E-value=0.0041  Score=48.25  Aligned_cols=83  Identities=10%  Similarity=0.045  Sum_probs=61.4

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEE
Q 023772           30 GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVK  109 (277)
Q Consensus        30 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~  109 (277)
                      |++++-|...|.+.+-+..+|.....|..-..--......+++..|..|+.|+.....|..+..++.+.+.......+-.
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~  142 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPV  142 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccce
Confidence            67888999999999999999987776654332223344567899999999999999999999988877654333223333


Q ss_pred             Eec
Q 023772          110 FNE  112 (277)
Q Consensus       110 ~~~  112 (277)
                      ..+
T Consensus       143 i~~  145 (354)
T KOG4649|consen  143 IAP  145 (354)
T ss_pred             ecC
Confidence            444

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.99  E-value=0.0018  Score=56.86  Aligned_cols=168  Identities=14%  Similarity=0.087  Sum_probs=95.9

Q ss_pred             CcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCc----EEEEeCccCCCcceEeeccccCcEEEEEecCC
Q 023772           82 RQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQS----LRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT  157 (277)
Q Consensus        82 ~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (277)
                      +.+.+.|.++.++..++.--. .-..++++++++++++.+.+..    +..-+..  .......+...  .+..+..+++
T Consensus       215 ~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~--e~d~~vvfni~--~iea~vkdGK  289 (635)
T PRK02888        215 SLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAA--ERDWVVVFNIA--RIEEAVKAGK  289 (635)
T ss_pred             EEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccc--cCceEEEEchH--HHHHhhhCCC
Confidence            556677777766666554322 2345778888888877764321    1111111  11111111000  0001111223


Q ss_pred             eEEEeecCCcEEEEEccC----Ccccc--cCCCCCeeEEEEeCCCCEEEEEe-cCCeEEEEECCCCce------------
Q 023772          158 EIIGGSVDGTVRTFDIRV----GRELS--DDLGQPVNCISMSNDGNCILASC-LDSTLRLLDRSTGEL------------  218 (277)
Q Consensus       158 ~~~~g~~d~~i~i~d~~~----~~~~~--~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~wd~~~~~~------------  218 (277)
                      ....  .++.+.+.|.++    +..+.  ...+.....+.++|||+++++++ .+.++-+.|+.+.+.            
T Consensus       290 ~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~v  367 (635)
T PRK02888        290 FKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAV  367 (635)
T ss_pred             EEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceE
Confidence            3222  256799999887    32222  23566778899999999887655 588999999977542            


Q ss_pred             EEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcC
Q 023772          219 LQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVD  259 (277)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~  259 (277)
                      +.+...-.   -.+...|.++|....|-..|.+|-.||+..
T Consensus       368 vaevevGl---GPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        368 VAEPELGL---GPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             EEeeccCC---CcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            22221111   123445777887667778899999999987

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.99  E-value=0.0057  Score=49.82  Aligned_cols=239  Identities=12%  Similarity=0.086  Sum_probs=137.3

Q ss_pred             EEEeCCCCEEEEEe----------CCCcEEEEcCCCCeeEEEEeccCc-------cEEEEEEcCCCCEEEEE--eCCCcE
Q 023772           24 ARFNGDGNYCLSCG----------KDRTIRLWNPHRGIHIKTYKSHGR-------EVRDVHVTADNSKLISC--GGDRQI   84 (277)
Q Consensus        24 ~~~~~~~~~l~s~s----------~d~~v~iwd~~~~~~~~~~~~h~~-------~v~~~~~~~~~~~l~t~--s~d~~v   84 (277)
                      +..+|+++.+++++          ..-.|.+||..+-.....+.-..+       ......++.++++++..  +...+|
T Consensus        41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SV  120 (342)
T PF06433_consen   41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSV  120 (342)
T ss_dssp             EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEE
T ss_pred             eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeE
Confidence            55789999888653          235789999999877766543322       23456788888877654  566789


Q ss_pred             EEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcce---EeeccccCcEE---EEEecCCe
Q 023772           85 FYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPI---QIIDSFQDSVM---SVCLTKTE  158 (277)
Q Consensus        85 ~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~  158 (277)
                      -|-|++.++.+..+.--.   +...+-.....+.+-+.||++.-..+.....+..   ..+....+++.   .+......
T Consensus       121 tVVDl~~~kvv~ei~~PG---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~  197 (342)
T PF06433_consen  121 TVVDLAAKKVVGEIDTPG---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGR  197 (342)
T ss_dssp             EEEETTTTEEEEEEEGTS---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTE
T ss_pred             EEEECCCCceeeeecCCC---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCe
Confidence            999999988877665321   2222222234577778889888887764322211   11111112111   11122334


Q ss_pred             EEEeecCCcEEEEEccCCcc-----cccCC---------CCCeeEEEEeCCCCEEEEEe--------cCC--eEEEEECC
Q 023772          159 IIGGSVDGTVRTFDIRVGRE-----LSDDL---------GQPVNCISMSNDGNCILASC--------LDS--TLRLLDRS  214 (277)
Q Consensus       159 ~~~g~~d~~i~i~d~~~~~~-----~~~~~---------~~~v~~~~~s~~~~~l~~~~--------~d~--~i~~wd~~  214 (277)
                      ++--+.+|.++--|+.....     +....         ..-..-+++++..+.|..--        .|+  .|-++|+.
T Consensus       198 ~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~  277 (342)
T PF06433_consen  198 LYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLK  277 (342)
T ss_dssp             EEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETT
T ss_pred             EEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECC
Confidence            54467788887777754331     11000         12245578887665554431        222  36677899


Q ss_pred             CCceEEEEeccccceeeeeeEecCCCc-eEEe-ecCCCeEEEEECcCccceeeecc
Q 023772          215 TGELLQEYKGHICKSFKTDCCLTNSDA-HVTG-GSEDGYIYFWDLVDASVVAKFKA  268 (277)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s-gs~d~~i~iwd~~~~~~~~~~~~  268 (277)
                      +++.+..+....   ...+...+.+++ +|.+ ...++.+.+||..+|++++++++
T Consensus       278 t~krv~Ri~l~~---~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  278 THKRVARIPLEH---PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             TTEEEEEEEEEE---EESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             CCeEEEEEeCCC---ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            999998886431   223445566554 5544 45689999999999999999884

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>smart00320 WD40 WD40 repeats

Probab=97.97  E-value=3.6e-05  Score=40.82  Aligned_cols=39  Identities=36%  Similarity=0.501  Sum_probs=34.6

Q ss_pred             CeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023772           50 GIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWD   88 (277)
Q Consensus        50 ~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd   88 (277)
                      +.+...+..|...|.++.|.+.+..+++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345677788999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.97  E-value=0.00031  Score=59.40  Aligned_cols=140  Identities=24%  Similarity=0.437  Sum_probs=94.4

Q ss_pred             CCCE-EEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCC-------EEEEEeCCCcEEEEeCccCCCcceEee
Q 023772           71 DNSK-LISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSS-------VVVSAGYDQSLRAWDCRSHSTEPIQII  142 (277)
Q Consensus        71 ~~~~-l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~-------~l~s~~~d~~i~iwd~~~~~~~~~~~~  142 (277)
                      +.++ +.++.....++-.|++.|+.+..+.-|.. |+-+.+.|+.+       .-+.|-.|..|.-||+|-.....+...
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~  422 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV  422 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence            3344 44566667889999999999999998776 77777877642       234467788999999985443222222


Q ss_pred             ccccC----cEEEEEec-CCeEEEeecCCcEEEEEccCCcc---cccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEEC
Q 023772          143 DSFQD----SVMSVCLT-KTEIIGGSVDGTVRTFDIRVGRE---LSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDR  213 (277)
Q Consensus       143 ~~~~~----~~~~~~~~-~~~~~~g~~d~~i~i~d~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~  213 (277)
                      +.++-    ...+.... ..++++|+.+|.||+||- .++.   .....+++|..+..+.+|++|++.+ +.++-+-+.
T Consensus       423 q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t  499 (644)
T KOG2395|consen  423 QSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT  499 (644)
T ss_pred             eccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence            22211    11222222 345999999999999995 3332   2335678999999999999987766 456766664

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.96  E-value=0.0047  Score=54.36  Aligned_cols=183  Identities=13%  Similarity=0.050  Sum_probs=104.8

Q ss_pred             EEeCCCCEEE-EEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCC----CcEEEEECCCCceeEEee
Q 023772           25 RFNGDGNYCL-SCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGD----RQIFYWDVSTGRVIRKFR   99 (277)
Q Consensus        25 ~~~~~~~~l~-s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d----~~v~~wd~~~~~~~~~~~   99 (277)
                      -+++||+.+. +.-..+.+.+.|..+.+...++.-- +....++++++++++++.+.+    .++..-+..+...+..|.
T Consensus       199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn  277 (635)
T PRK02888        199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN  277 (635)
T ss_pred             ccCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEc
Confidence            3456776654 3334466677787776666666543 355778899999988777532    223232222211111111


Q ss_pred             cccCceeEEEEecCCCEEEEEeCCCcEEEEeCccC---CCcceEeeccccCcEEEEE--ecCCe-EEEeecCCcEEEEEc
Q 023772          100 GHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSH---STEPIQIIDSFQDSVMSVC--LTKTE-IIGGSVDGTVRTFDI  173 (277)
Q Consensus       100 ~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~-~~~g~~d~~i~i~d~  173 (277)
                      ...  +  ..+.++++....  .++.|.+.|.+..   .......+ ........+.  +++.+ ++++..+.++.++|+
T Consensus       278 i~~--i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv  350 (635)
T PRK02888        278 IAR--I--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDV  350 (635)
T ss_pred             hHH--H--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcEEEEEC
Confidence            100  0  022345665554  3678999998761   11111111 1222233344  44455 556677999999999


Q ss_pred             cCCccccc-------------CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCC
Q 023772          174 RVGRELSD-------------DLGQPVNCISMSNDGNCILASCLDSTLRLLDRST  215 (277)
Q Consensus       174 ~~~~~~~~-------------~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~  215 (277)
                      .+.+....             ..+......+|+++|+.+.+-..|..|-.||+.+
T Consensus       351 ~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        351 RKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             hhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            87553211             1233445678999999888888999999999865

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.90  E-value=0.0074  Score=49.87  Aligned_cols=176  Identities=14%  Similarity=0.167  Sum_probs=100.4

Q ss_pred             CcEEEEECCCCceeEEeeccc-CceeEEEE---ecC----CCEEEEEeC----------CCcEEEEeCccC-C-CcceEe
Q 023772           82 RQIFYWDVSTGRVIRKFRGHE-SEVNAVKF---NEY----SSVVVSAGY----------DQSLRAWDCRSH-S-TEPIQI  141 (277)
Q Consensus        82 ~~v~~wd~~~~~~~~~~~~h~-~~v~~i~~---~~~----~~~l~s~~~----------d~~i~iwd~~~~-~-~~~~~~  141 (277)
                      ..|++.|..+.+.+.++.-.. ..+.++..   ..+    .++++.|..          .|.|.++++... . ......
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            357888888777766554322 23343333   222    356665542          288999998763 1 011111


Q ss_pred             --eccccCcEEEEEecCCeEEEeecCCcEEEEEccCCc-cccc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCC-C
Q 023772          142 --IDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGR-ELSD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRST-G  216 (277)
Q Consensus       142 --~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~-~  216 (277)
                        .....+++.++..-...++. +..+.|.+|++...+ .... ....++...+....+++++.|..-..+.++..+. .
T Consensus        82 i~~~~~~g~V~ai~~~~~~lv~-~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~  160 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSFNGRLVV-AVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEEN  160 (321)
T ss_dssp             EEEEEESS-EEEEEEETTEEEE-EETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTT
T ss_pred             EEEEeecCcceEhhhhCCEEEE-eecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccC
Confidence              23446778888876666544 446899999998766 2221 1222223333344466999998888888875533 2


Q ss_pred             ceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECc
Q 023772          217 ELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLV  258 (277)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~  258 (277)
                      +.+..+.........+.+.+-+++..++.+..+|.+.++...
T Consensus       161 ~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  161 NKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             E-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             CEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            223333322223445556666455688889999999998876

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.86  E-value=0.0038  Score=53.58  Aligned_cols=148  Identities=11%  Similarity=0.126  Sum_probs=77.8

Q ss_pred             EEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEE-eCcc
Q 023772           55 TYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAW-DCRS  133 (277)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iw-d~~~  133 (277)
                      .+......+..+.++|+++.++.+ .||.-.++.....+... +    +.-....|.+ ...++.-...++|+++ +...
T Consensus        27 ~lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-~----G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~   99 (443)
T PF04053_consen   27 ELGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-F----GSGLSFVWSS-RNRYAVLESSSTIKIYKNFKN   99 (443)
T ss_dssp             EEEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-E----EE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE
T ss_pred             cCCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-c----CceeEEEEec-CccEEEEECCCeEEEEEcCcc
Confidence            333344568899999999888874 47777777643333222 2    1223466777 4456666778899996 3332


Q ss_pred             CCCcceEeeccccCcEEEEEecCCeEEEeecCCcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEEC
Q 023772          134 HSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDR  213 (277)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~  213 (277)
                      .....+. .   +..+..+-. +..+... .++.|.+||..+++.+....-.+|..+.|+++|++++..+.+ .+.+++.
T Consensus       100 ~~~k~i~-~---~~~~~~If~-G~LL~~~-~~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~-~i~il~~  172 (443)
T PF04053_consen  100 EVVKSIK-L---PFSVEKIFG-GNLLGVK-SSDFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKD-SIYILKY  172 (443)
T ss_dssp             -TT---------SS-EEEEE--SSSEEEE-ETTEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred             ccceEEc-C---CcccceEEc-CcEEEEE-CCCCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence            2111111 1   112222222 4434443 455899999999887766544558999999999998888765 6888776


Q ss_pred             CCC
Q 023772          214 STG  216 (277)
Q Consensus       214 ~~~  216 (277)
                      ...
T Consensus       173 ~~~  175 (443)
T PF04053_consen  173 NLE  175 (443)
T ss_dssp             -HH
T ss_pred             cch
Confidence            433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.83  E-value=0.013  Score=48.48  Aligned_cols=171  Identities=15%  Similarity=0.159  Sum_probs=104.8

Q ss_pred             CcEEEEcCCCCeeEEEEecc-CccEEEEEE---cCC----CCEEEEEeC---------C-CcEEEEECCCC----ceeEE
Q 023772           40 RTIRLWNPHRGIHIKTYKSH-GREVRDVHV---TAD----NSKLISCGG---------D-RQIFYWDVSTG----RVIRK   97 (277)
Q Consensus        40 ~~v~iwd~~~~~~~~~~~~h-~~~v~~~~~---~~~----~~~l~t~s~---------d-~~v~~wd~~~~----~~~~~   97 (277)
                      ..|++.|..+.+.+..+.-. ...+.+++.   ..+    ..+|+.|..         . |.+.++++...    ..+..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            36889998887766655432 234555543   322    456665532         2 88999999884    12221


Q ss_pred             e--ecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCC-CcceEeeccccCcEEEEEecCCeEEEeecCCcEEEEEcc
Q 023772           98 F--RGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHS-TEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIR  174 (277)
Q Consensus        98 ~--~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~  174 (277)
                      .  ....++|.++... ++ .++. +.++.|.+|++.... ..+..... .+..+.++...++.++.|...+.+.++...
T Consensus        82 i~~~~~~g~V~ai~~~-~~-~lv~-~~g~~l~v~~l~~~~~l~~~~~~~-~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~  157 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NG-RLVV-AVGNKLYVYDLDNSKTLLKKAFYD-SPFYITSLSVFKNYILVGDAMKSVSLLRYD  157 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TT-EEEE-EETTEEEEEEEETTSSEEEEEEE--BSSSEEEEEEETTEEEEEESSSSEEEEEEE
T ss_pred             EEEEeecCcceEhhhh-CC-EEEE-eecCEEEEEEccCcccchhhheec-ceEEEEEEeccccEEEEEEcccCEEEEEEE
Confidence            1  2347889888877 33 3433 335789999997655 22222222 234677777778899999888888876443


Q ss_pred             C-Cccc---cc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECC
Q 023772          175 V-GREL---SD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRS  214 (277)
Q Consensus       175 ~-~~~~---~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~  214 (277)
                      . ...+   .. .....+.++.|-++++.++.+..+|.+.++...
T Consensus       158 ~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  158 EENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             TTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             ccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            2 1211   11 223457788887666789999999999998764

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=0.00015  Score=62.36  Aligned_cols=93  Identities=14%  Similarity=0.084  Sum_probs=75.3

Q ss_pred             CCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEE-EEEEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q 023772           18 EGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVR-DVHVTADNSKLISCGGDRQIFYWDVSTGRVIR   96 (277)
Q Consensus        18 ~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~   96 (277)
                      .-.|..+.|+|.-+++|.+-.+|.+.+.... -..+-++.-|..+++ +++|.|+|+.|+.|-.||+|++-|++++..+.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            3457889999999999999999999999877 556778877788888 99999999999999999999999999988776


Q ss_pred             Eeec-ccCceeEEEEe
Q 023772           97 KFRG-HESEVNAVKFN  111 (277)
Q Consensus        97 ~~~~-h~~~v~~i~~~  111 (277)
                      .+.. -..+|..+.|.
T Consensus        99 ~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   99 SFLFSVETDISKGIWD  114 (665)
T ss_pred             ccccccccchheeecc
Confidence            5321 23344444443

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.81  E-value=0.016  Score=49.14  Aligned_cols=226  Identities=10%  Similarity=0.116  Sum_probs=124.9

Q ss_pred             cEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCe-------------------------------------------eEEEE
Q 023772           20 AVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI-------------------------------------------HIKTY   56 (277)
Q Consensus        20 ~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~-------------------------------------------~~~~~   56 (277)
                      .|+.+.|+++...|+.+-..|.|-||.....+                                           +...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            47889999998888999999999998532110                                           11122


Q ss_pred             eccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE--eec------ccCceeEEEEe-----cCC---CEEEEE
Q 023772           57 KSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRK--FRG------HESEVNAVKFN-----EYS---SVVVSA  120 (277)
Q Consensus        57 ~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~--~~~------h~~~v~~i~~~-----~~~---~~l~s~  120 (277)
                      +...++|++++.+ +-.+++.|..+|.+.+.|++....+..  +..      ....++++.|.     .|+   -.++.|
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            3446889999997 667899999999999999977666654  122      23467778775     222   368888


Q ss_pred             eCCCcEEEEeCccCCCc--ceE---eeccccCcEEEEEe-cC----------------------CeEEEeecCCcEEEEE
Q 023772          121 GYDQSLRAWDCRSHSTE--PIQ---IIDSFQDSVMSVCL-TK----------------------TEIIGGSVDGTVRTFD  172 (277)
Q Consensus       121 ~~d~~i~iwd~~~~~~~--~~~---~~~~~~~~~~~~~~-~~----------------------~~~~~g~~d~~i~i~d  172 (277)
                      ...|.+.+|.+......  .+.   ....+.+++..+.+ +.                      ..++....+..+|++.
T Consensus       162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~  241 (395)
T PF08596_consen  162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK  241 (395)
T ss_dssp             ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred             eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence            99999999987521111  111   11123344433332 10                      1355566688899999


Q ss_pred             ccCCcccccCCCCCe--eEEEE-----eCCCCEEEEEecCCeEEEEECCCCceEEEEeccc--cceeeeeeEecCCCceE
Q 023772          173 IRVGRELSDDLGQPV--NCISM-----SNDGNCILASCLDSTLRLLDRSTGELLQEYKGHI--CKSFKTDCCLTNSDAHV  243 (277)
Q Consensus       173 ~~~~~~~~~~~~~~v--~~~~~-----s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l  243 (277)
                      +.+.+........+.  ..+.+     ...+..|++-..+|.+++|.+-.-+.+..+.-..  .......++++++|..+
T Consensus       242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~  321 (395)
T PF08596_consen  242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIF  321 (395)
T ss_dssp             TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EE
T ss_pred             CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEE
Confidence            887665443333322  23334     2345667778899999999998877776655321  11122345567777665


Q ss_pred             Eee
Q 023772          244 TGG  246 (277)
Q Consensus       244 ~sg  246 (277)
                      +-.
T Consensus       322 ~~~  324 (395)
T PF08596_consen  322 YWT  324 (395)
T ss_dssp             EE-
T ss_pred             EEe
Confidence            543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.77  E-value=0.024  Score=50.14  Aligned_cols=235  Identities=14%  Similarity=0.116  Sum_probs=129.4

Q ss_pred             CEEEEEeCCCcEEEEcCCCCeeEEEEecc--C--ccEEEEEEcCCCCEEEEEe------CCCcEEEEECCCCceeEEeec
Q 023772           31 NYCLSCGKDRTIRLWNPHRGIHIKTYKSH--G--REVRDVHVTADNSKLISCG------GDRQIFYWDVSTGRVIRKFRG  100 (277)
Q Consensus        31 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~h--~--~~v~~~~~~~~~~~l~t~s------~d~~v~~wd~~~~~~~~~~~~  100 (277)
                      ..++.++.|+.+.-.|..+|+.+-.+...  .  ..+.+.-...++ .++.+.      .++.|..+|.++|+.+.++..
T Consensus       121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~  199 (527)
T TIGR03075       121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT  199 (527)
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence            45667788899999999999887655421  1  112221111233 455443      368999999999998766432


Q ss_pred             cc-------------------------------Ccee-EEEEecCCCEEEEEeCCC----------------cEEEEeCc
Q 023772          101 HE-------------------------------SEVN-AVKFNEYSSVVVSAGYDQ----------------SLRAWDCR  132 (277)
Q Consensus       101 h~-------------------------------~~v~-~i~~~~~~~~l~s~~~d~----------------~i~iwd~~  132 (277)
                      -.                               ..++ .+.+.+...+++.+..+.                .|.--|++
T Consensus       200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~  279 (527)
T TIGR03075       200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD  279 (527)
T ss_pred             cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence            11                               1121 235555555665555331                23333444


Q ss_pred             cCCCcceEeeccc--------cCc-EEEEEecCC---eEEEeecCCcEEEEEccCCccccc-----------CCC-----
Q 023772          133 SHSTEPIQIIDSF--------QDS-VMSVCLTKT---EIIGGSVDGTVRTFDIRVGRELSD-----------DLG-----  184 (277)
Q Consensus       133 ~~~~~~~~~~~~~--------~~~-~~~~~~~~~---~~~~g~~d~~i~i~d~~~~~~~~~-----------~~~-----  184 (277)
                      +++.........|        ..+ ...+..++.   .++.+..+|.+.+.|-++++.+..           ...     
T Consensus       280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~  359 (527)
T TIGR03075       280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGR  359 (527)
T ss_pred             cCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCC
Confidence            3322211111111        111 122223333   366788889999999887765310           000     


Q ss_pred             ---------------------------CCeeEEEEeCCCCEEEEEecC--------------------------------
Q 023772          185 ---------------------------QPVNCISMSNDGNCILASCLD--------------------------------  205 (277)
Q Consensus       185 ---------------------------~~v~~~~~s~~~~~l~~~~~d--------------------------------  205 (277)
                                                 .....++++|+..++.....+                                
T Consensus       360 p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~  439 (527)
T TIGR03075       360 PIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDH  439 (527)
T ss_pred             CccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCC
Confidence                                       011225677766555443332                                


Q ss_pred             -CeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccC
Q 023772          206 -STLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAH  269 (277)
Q Consensus       206 -~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h  269 (277)
                       +.|.-+|+.+++.+..+.... ..  ....+...+.+++.++.||.++.+|.++|+.+-+++-.
T Consensus       440 ~g~l~AiD~~tGk~~W~~~~~~-p~--~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g  501 (527)
T TIGR03075       440 MGSLIAWDPITGKIVWEHKEDF-PL--WGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG  501 (527)
T ss_pred             ceeEEEEeCCCCceeeEecCCC-CC--CCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence             457778888888776654321 10  01112224557777889999999999999998777643

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.76  E-value=0.0048  Score=41.59  Aligned_cols=99  Identities=16%  Similarity=0.202  Sum_probs=62.4

Q ss_pred             eeEEEEec---C-CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEE-EecCCeEEEeecCCcEEEEEccCCccc
Q 023772          105 VNAVKFNE---Y-SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSV-CLTKTEIIGGSVDGTVRTFDIRVGREL  179 (277)
Q Consensus       105 v~~i~~~~---~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~d~~i~i~d~~~~~~~  179 (277)
                      |++|++..   + .+.|+.|+.|..|++|+-..    .+..+... ..+..+ .+.+..++.+..+|+|-+|+- ..+.+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e----~~~Ei~e~-~~v~~L~~~~~~~F~Y~l~NGTVGvY~~-~~RlW   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE----IVAEITET-DKVTSLCSLGGGRFAYALANGTVGVYDR-SQRLW   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc----EEEEEecc-cceEEEEEcCCCEEEEEecCCEEEEEeC-cceee
Confidence            45555543   3 25788999999999997432    22222222 334433 445667999999999999985 33445


Q ss_pred             ccCCCCCeeEEEEeC-C--C-CEEEEEecCCeEE
Q 023772          180 SDDLGQPVNCISMSN-D--G-NCILASCLDSTLR  209 (277)
Q Consensus       180 ~~~~~~~v~~~~~s~-~--~-~~l~~~~~d~~i~  209 (277)
                      .....+.+.++.+.. +  | ..|++|-.+|.|-
T Consensus        76 RiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   76 RIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            555555666665443 2  2 3588888888763

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.74  E-value=0.0052  Score=41.43  Aligned_cols=100  Identities=13%  Similarity=0.195  Sum_probs=67.0

Q ss_pred             EEEEEEeC---CC-CEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q 023772           21 VLAARFNG---DG-NYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIR   96 (277)
Q Consensus        21 V~~~~~~~---~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~   96 (277)
                      |+++++.+   +| +.|+.||.|..||+|+-.  +.+..+..+ ..|.++.-... .+++.+..+|+|-+|+-  .+.+.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence            56666654   33 689999999999999844  456666654 56777776655 67889999999999975  33444


Q ss_pred             EeecccCceeEEEEecC---C-CEEEEEeCCCcEE
Q 023772           97 KFRGHESEVNAVKFNEY---S-SVVVSAGYDQSLR  127 (277)
Q Consensus        97 ~~~~h~~~v~~i~~~~~---~-~~l~s~~~d~~i~  127 (277)
                      ..+.. ..+.++.+..-   + ..|++|=.+|.|-
T Consensus        76 RiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   76 RIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            44432 33444554332   2 2577777777764

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.73  E-value=0.016  Score=46.70  Aligned_cols=228  Identities=14%  Similarity=0.186  Sum_probs=128.2

Q ss_pred             CCCCEEEEEeCCCcEEEEcC-CCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE---------
Q 023772           28 GDGNYCLSCGKDRTIRLWNP-HRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRK---------   97 (277)
Q Consensus        28 ~~~~~l~s~s~d~~v~iwd~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~---------   97 (277)
                      ..++.|+-|.++| +.+++. ......+..+  ..+|..+.+.++-+.++.-+ |+.+.++++..-.....         
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~   80 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS   80 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence            4578888988888 899988 3333333333  33599999999887776654 59999999875433221         


Q ss_pred             -----eecccCceeEEE--EecCCCEEEEEeCCCcEEEEeCccCCC---cceEeeccccCcEEEEEecCCeEEEeecCCc
Q 023772           98 -----FRGHESEVNAVK--FNEYSSVVVSAGYDQSLRAWDCRSHST---EPIQIIDSFQDSVMSVCLTKTEIIGGSVDGT  167 (277)
Q Consensus        98 -----~~~h~~~v~~i~--~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~  167 (277)
                           -......+...+  -...+...+.......|.+|.......   .....+ ..+..+..+.+.++.++.|..+ .
T Consensus        81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~-~lp~~~~~i~~~~~~i~v~~~~-~  158 (275)
T PF00780_consen   81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI-SLPDPPSSIAFLGNKICVGTSK-G  158 (275)
T ss_pred             ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE-EcCCCcEEEEEeCCEEEEEeCC-c
Confidence                 011222343333  122344444455666899988765321   122222 2346677788888888777644 4


Q ss_pred             EEEEEccCCcc--cccCC------------CCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEE--EEeccccceee
Q 023772          168 VRTFDIRVGRE--LSDDL------------GQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQ--EYKGHICKSFK  231 (277)
Q Consensus       168 i~i~d~~~~~~--~~~~~------------~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~--~~~~~~~~~~~  231 (277)
                      ..+.|+.++..  +....            ..++..+... ++.+|++  .|..-...|. .|+..+  .+. ...  ..
T Consensus       159 f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~--~~~~g~fv~~-~G~~~r~~~i~-W~~--~p  231 (275)
T PF00780_consen  159 FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLC--YDNIGVFVNK-NGEPSRKSTIQ-WSS--AP  231 (275)
T ss_pred             eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEE--ecceEEEEcC-CCCcCcccEEE-cCC--ch
Confidence            66778875432  21110            1233334443 3455554  2333344454 344333  111 111  11


Q ss_pred             eeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCcc
Q 023772          232 TDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSL  271 (277)
Q Consensus       232 ~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~  271 (277)
                      ...++  ...|+++-+. +.|.||++.++++++.+..++.
T Consensus       232 ~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~~~  268 (275)
T PF00780_consen  232 QSVAY--SSPYLIAFSS-NSIEVRSLETGELVQTIPLPNI  268 (275)
T ss_pred             hEEEE--ECCEEEEECC-CEEEEEECcCCcEEEEEECCCE
Confidence            22222  2346666554 5699999999999999986643

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.73  E-value=8.5e-06  Score=69.87  Aligned_cols=161  Identities=17%  Similarity=0.226  Sum_probs=99.7

Q ss_pred             cceeeccCCcEEEEEEeC-CCCEEEEE----eCCCcEEEEcCCCC--eeEE--EEec-cCccEEEEEEcCCCCEEEEEeC
Q 023772           11 ANVLKGHEGAVLAARFNG-DGNYCLSC----GKDRTIRLWNPHRG--IHIK--TYKS-HGREVRDVHVTADNSKLISCGG   80 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~-~~~~l~s~----s~d~~v~iwd~~~~--~~~~--~~~~-h~~~v~~~~~~~~~~~l~t~s~   80 (277)
                      .....+|..+.++++|++ |.+.||.|    -.|..+.|||+.++  .+..  .|.. -.....+++|..+.+.+++|..
T Consensus        95 ~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~  174 (783)
T KOG1008|consen   95 AEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMT  174 (783)
T ss_pred             ceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccc
Confidence            344567888999999998 55666665    35678999998775  1111  1221 2334568889888889999999


Q ss_pred             CCcEEEEECCCCceeEEeecccCceeEEEEec-CCCEEEEEeCCCcEEEEe-CccCCCcceEeeccc----cCcEEEEEe
Q 023772           81 DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNE-YSSVVVSAGYDQSLRAWD-CRSHSTEPIQIIDSF----QDSVMSVCL  154 (277)
Q Consensus        81 d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~~~~~----~~~~~~~~~  154 (277)
                      .+.++++|+...... ...-.+..+..+.+.| ...++++ ..||.|-+|| .+... .++++....    +.....+.+
T Consensus       175 sr~~~ifdlRqs~~~-~~svnTk~vqG~tVdp~~~nY~cs-~~dg~iAiwD~~rnie-npl~~i~~~~N~~~~~l~~~ay  251 (783)
T KOG1008|consen  175 SRSVHIFDLRQSLDS-VSSVNTKYVQGITVDPFSPNYFCS-NSDGDIAIWDTYRNIE-NPLQIILRNENKKPKQLFALAY  251 (783)
T ss_pred             cchhhhhhhhhhhhh-hhhhhhhhcccceecCCCCCceec-cccCceeeccchhhhc-cHHHHHhhCCCCcccceeeEEe
Confidence            999999998743211 1111244566678888 5666665 5599999999 33221 122221111    112444444


Q ss_pred             cCC--e-EEEe-ecCCcEEEEEcc
Q 023772          155 TKT--E-IIGG-SVDGTVRTFDIR  174 (277)
Q Consensus       155 ~~~--~-~~~g-~~d~~i~i~d~~  174 (277)
                      .|.  . +++. -..++|+.||+.
T Consensus       252 cPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  252 CPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             ccCCcchhhhhccCcceEEEeccc
Confidence            433  2 3333 345789999985

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.71  E-value=0.025  Score=48.49  Aligned_cols=238  Identities=13%  Similarity=0.101  Sum_probs=120.3

Q ss_pred             EEEEEEeCCCCEEE-EEeCC----CcEEEEcCCCCeeEEEE-eccCccEEEEEEcCCCCEEEEEeCC-----------Cc
Q 023772           21 VLAARFNGDGNYCL-SCGKD----RTIRLWNPHRGIHIKTY-KSHGREVRDVHVTADNSKLISCGGD-----------RQ   83 (277)
Q Consensus        21 V~~~~~~~~~~~l~-s~s~d----~~v~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~t~s~d-----------~~   83 (277)
                      +....++|+|++|+ +-+..    .++++.|+.+|+.+... ...  .-..+.|.++++.|+-...+           ..
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            34678899999888 33444    45999999999766532 221  12239999998877655433           24


Q ss_pred             EEEEECCCCce--eEEeecccCc--eeEEEEecCCCEEEEE-eCCC---cEEEEeCccC---CCcceEeeccccCcEEEE
Q 023772           84 IFYWDVSTGRV--IRKFRGHESE--VNAVKFNEYSSVVVSA-GYDQ---SLRAWDCRSH---STEPIQIIDSFQDSVMSV  152 (277)
Q Consensus        84 v~~wd~~~~~~--~~~~~~h~~~--v~~i~~~~~~~~l~s~-~~d~---~i~iwd~~~~---~~~~~~~~~~~~~~~~~~  152 (277)
                      |+.|.+.+...  ...|......  ...+..++++++++.. ....   .+.+.++...   .................+
T Consensus       204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v  283 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV  283 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred             EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence            78888876532  2233333332  4578889999886643 3333   3666666543   122222233333333444


Q ss_pred             EecCCeEEEee----cCCcEEEEEccCCcc-----cccCCCC--CeeEEEEeCCCCEEEEE-ecCC--eEEEEECCCCce
Q 023772          153 CLTKTEIIGGS----VDGTVRTFDIRVGRE-----LSDDLGQ--PVNCISMSNDGNCILAS-CLDS--TLRLLDRSTGEL  218 (277)
Q Consensus       153 ~~~~~~~~~g~----~d~~i~i~d~~~~~~-----~~~~~~~--~v~~~~~s~~~~~l~~~-~~d~--~i~~wd~~~~~~  218 (277)
                      ...+..+..-+    ..+.|...++.....     .......  .+..+..  .+.+|+.. ..++  .|+++|+..+..
T Consensus       284 ~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~~  361 (414)
T PF02897_consen  284 DHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGKE  361 (414)
T ss_dssp             EEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred             EccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCcE
Confidence            44454433222    234565666665432     1112222  3444443  44455544 4444  578899983344


Q ss_pred             EEEEeccccceeeeeeEecCCCc--eEEee--cCCCeEEEEECcCccce
Q 023772          219 LQEYKGHICKSFKTDCCLTNSDA--HVTGG--SEDGYIYFWDLVDASVV  263 (277)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~--~l~sg--s~d~~i~iwd~~~~~~~  263 (277)
                      ......-.... .......+++.  ++...  ..-+.++-||+.+++..
T Consensus       362 ~~~~~~p~~g~-v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~  409 (414)
T PF02897_consen  362 SREIPLPEAGS-VSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT  409 (414)
T ss_dssp             EEEEESSSSSE-EEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred             EeeecCCcceE-EeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence            33333211111 11111122222  22222  24567888999888653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.65  E-value=0.017  Score=44.98  Aligned_cols=105  Identities=12%  Similarity=0.087  Sum_probs=76.0

Q ss_pred             CCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEE
Q 023772           29 DGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAV  108 (277)
Q Consensus        29 ~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i  108 (277)
                      ...+++-||..+.++--|..+|+.+-.-.. ...+.+-+.- -+++++.|...|.+.+.+.++|.....+..-..-=...
T Consensus        22 skT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a   99 (354)
T KOG4649|consen   22 SKTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRA   99 (354)
T ss_pred             CceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccce
Confidence            356778889999999999999876543321 2233333332 46779999999999999999998777665432222234


Q ss_pred             EEecCCCEEEEEeCCCcEEEEeCccCC
Q 023772          109 KFNEYSSVVVSAGYDQSLRAWDCRSHS  135 (277)
Q Consensus       109 ~~~~~~~~l~s~~~d~~i~iwd~~~~~  135 (277)
                      ...+++.++..++.|++...-|.++..
T Consensus       100 ~~d~~~glIycgshd~~~yalD~~~~~  126 (354)
T KOG4649|consen  100 QCDFDGGLIYCGSHDGNFYALDPKTYG  126 (354)
T ss_pred             EEcCCCceEEEecCCCcEEEecccccc
Confidence            566788999999999999999987643

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.65  E-value=0.029  Score=47.59  Aligned_cols=199  Identities=12%  Similarity=0.154  Sum_probs=131.1

Q ss_pred             EEEEeCCCCEE-EEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceeEEe
Q 023772           23 AARFNGDGNYC-LSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGG---DRQIFYWDVSTGRVIRKF   98 (277)
Q Consensus        23 ~~~~~~~~~~l-~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~---d~~v~~wd~~~~~~~~~~   98 (277)
                      .+..++.+..+ ++...+..+.+.|..+.+.......- .....++++++++.+..+..   ++++.+.|..+++.+.+.
T Consensus        78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~  156 (381)
T COG3391          78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATI  156 (381)
T ss_pred             ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec-cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEE
Confidence            56777777744 45556699999998777666655432 26788999999988876655   689999999999888875


Q ss_pred             ecccCceeEEEEecCCCEEEEE-eCCCcEEEEeCccCCCcc-eE--eecccc-CcEEEEEecCCeEEEeec---CCcEEE
Q 023772           99 RGHESEVNAVKFNEYSSVVVSA-GYDQSLRAWDCRSHSTEP-IQ--IIDSFQ-DSVMSVCLTKTEIIGGSV---DGTVRT  170 (277)
Q Consensus        99 ~~h~~~v~~i~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~-~~--~~~~~~-~~~~~~~~~~~~~~~g~~---d~~i~i  170 (277)
                      ..-..+ ..+++.|+++.+..+ ..++.+.+.|.......+ ..  ...... ..-..+..++..+...-.   ++.+..
T Consensus       157 ~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~  235 (381)
T COG3391         157 PVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLK  235 (381)
T ss_pred             ecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEE
Confidence            544455 789999999965554 478999999965432221 00  011111 112334445554333222   357888


Q ss_pred             EEccCCccccc--CCCC-CeeEEEEeCCCCEEEEE-ecCCeEEEEECCCCceEEEEe
Q 023772          171 FDIRVGRELSD--DLGQ-PVNCISMSNDGNCILAS-CLDSTLRLLDRSTGELLQEYK  223 (277)
Q Consensus       171 ~d~~~~~~~~~--~~~~-~v~~~~~s~~~~~l~~~-~~d~~i~~wd~~~~~~~~~~~  223 (277)
                      .|...+.....  ..+. ....+.++|+|+++... +..+.+.+-|..+......+.
T Consensus       236 id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~  292 (381)
T COG3391         236 IDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP  292 (381)
T ss_pred             EeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence            88877654433  1112 45668899999987776 445789999988877766544

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.65  E-value=0.029  Score=47.59  Aligned_cols=82  Identities=17%  Similarity=0.191  Sum_probs=57.4

Q ss_pred             eeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEecccc-ceeeeeeEecCC---------------Cc-eEEeecCC
Q 023772          187 VNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHIC-KSFKTDCCLTNS---------------DA-HVTGGSED  249 (277)
Q Consensus       187 v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~---------------~~-~l~sgs~d  249 (277)
                      +.+++.+|.+++.++...=|.|.++|+.++..++.++|--. ........-..+               .. +++-+-.-
T Consensus       310 ~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprR  389 (415)
T PF14655_consen  310 GESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRR  389 (415)
T ss_pred             EEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccC
Confidence            67789999999888877778999999999988887776321 111111100000               11 34456788


Q ss_pred             CeEEEEECcCccceeeecc
Q 023772          250 GYIYFWDLVDASVVAKFKA  268 (277)
Q Consensus       250 ~~i~iwd~~~~~~~~~~~~  268 (277)
                      |.|.||.+.+|..+..+..
T Consensus       390 g~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  390 GILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             CeEEEEecCCCCEEEEEEe
Confidence            9999999999999988874

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.58  E-value=0.014  Score=52.08  Aligned_cols=230  Identities=13%  Similarity=0.143  Sum_probs=117.7

Q ss_pred             eCCCCEEEEEeCC------CcEEEEcCCCCeeEEEEeccCcc-EEEEEEcCCCCEEEEEeCC------CcEEEEECCCCc
Q 023772           27 NGDGNYCLSCGKD------RTIRLWNPHRGIHIKTYKSHGRE-VRDVHVTADNSKLISCGGD------RQIFYWDVSTGR   93 (277)
Q Consensus        27 ~~~~~~l~s~s~d------~~v~iwd~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~t~s~d------~~v~~wd~~~~~   93 (277)
                      +..+.+++.||.+      ..+..||..++............ -.++++ .++...++||.|      .++..||..+++
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~-~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~  360 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAV-LNGKLYVVGGYDSGSDRLSSVERYDPRTNQ  360 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEE-ECCEEEEEccccCCCcccceEEEecCCCCc
Confidence            3345566677777      46788898887544333222222 233333 355777888888      356778876654


Q ss_pred             --eeEEeecccCceeEEEEecCCCEEEEEeCCCc-----EEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCC
Q 023772           94 --VIRKFRGHESEVNAVKFNEYSSVVVSAGYDQS-----LRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDG  166 (277)
Q Consensus        94 --~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~  166 (277)
                        .+..+...+.... +. .-++.+.+.||.||.     +..||..+..-..+..+.........+.+.+...+.||.++
T Consensus       361 W~~~a~M~~~R~~~~-v~-~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~  438 (571)
T KOG4441|consen  361 WTPVAPMNTKRSDFG-VA-VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDG  438 (571)
T ss_pred             eeccCCccCccccce-eE-EECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCC
Confidence              1112221111111 11 124677888888854     77788765433222222222223334455566667777554


Q ss_pred             ------cEEEEEccCCcc--cccCC-CCCeeEEEEeCCCCEEEEEecCC-----eEEEEECCCCceEEEEeccccceeee
Q 023772          167 ------TVRTFDIRVGRE--LSDDL-GQPVNCISMSNDGNCILASCLDS-----TLRLLDRSTGELLQEYKGHICKSFKT  232 (277)
Q Consensus       167 ------~i~i~d~~~~~~--~~~~~-~~~v~~~~~s~~~~~l~~~~~d~-----~i~~wd~~~~~~~~~~~~~~~~~~~~  232 (277)
                            .+..||..++.=  +.... .-.-..++. -++..++.|+.|+     ++..||..+.+.... ..........
T Consensus       439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v-~~m~~~rs~~  516 (571)
T KOG4441|consen  439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMV-APMTSPRSAV  516 (571)
T ss_pred             CccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEc-ccCccccccc
Confidence                  466788876531  11100 011111232 2566778888776     367788887765432 2111111111


Q ss_pred             eeEecCCCceEEeecCCCe-----EEEEECcCccc
Q 023772          233 DCCLTNSDAHVTGGSEDGY-----IYFWDLVDASV  262 (277)
Q Consensus       233 ~~~~~~~~~~l~sgs~d~~-----i~iwd~~~~~~  262 (277)
                      .++. -++...+.|+.||.     |..||..+.+.
T Consensus       517 g~~~-~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W  550 (571)
T KOG4441|consen  517 GVVV-LGGKLYAVGGFDGNNNLNTVECYDPETDTW  550 (571)
T ss_pred             cEEE-ECCEEEEEecccCccccceeEEcCCCCCce
Confidence            1222 23455555556553     66677766544

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.53  E-value=0.0027  Score=56.99  Aligned_cols=70  Identities=6%  Similarity=0.076  Sum_probs=62.4

Q ss_pred             EEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772           21 VLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        21 V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~   90 (277)
                      +++++|+|+.-.|+.|-.-|.+-+|...+.+.-.....|..+|..+.|+++|..++|+..=|.|.+|...
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            3569999999899999999999999988776666667799999999999999999999999999999875

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.50  E-value=0.044  Score=48.53  Aligned_cols=190  Identities=17%  Similarity=0.246  Sum_probs=112.3

Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeEEeeccc-Ccee----------EEEEecCCCEEEEEeCCCcEEEEeCccCCCcceE
Q 023772           72 NSKLISCGGDRQIFYWDVSTGRVIRKFRGHE-SEVN----------AVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQ  140 (277)
Q Consensus        72 ~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~-~~v~----------~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  140 (277)
                      +.+++.++.++.|.-.|.++|+.+.++.... ..+.          .+.+.  +..++.++.|+.+.-.|..+++.....
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            4677778888999999999999887765321 1111          11221  346667788999999998765432211


Q ss_pred             eecccc--CcEE-EEEecCCeEEEee------cCCcEEEEEccCCcccccCC----------------------------
Q 023772          141 IIDSFQ--DSVM-SVCLTKTEIIGGS------VDGTVRTFDIRVGRELSDDL----------------------------  183 (277)
Q Consensus       141 ~~~~~~--~~~~-~~~~~~~~~~~g~------~d~~i~i~d~~~~~~~~~~~----------------------------  183 (277)
                      ......  ..+. .-......++.+.      .+|.|.-+|.++++.+-...                            
T Consensus       147 ~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~  226 (527)
T TIGR03075       147 KNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGD  226 (527)
T ss_pred             ccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCC
Confidence            111110  0011 1111233455543      26789989988876432100                            


Q ss_pred             -----C-CCeeEEEEeCCCCEEEEEecC-----C-----------eEEEEECCCCceEEEEecccccee-------eeee
Q 023772          184 -----G-QPVNCISMSNDGNCILASCLD-----S-----------TLRLLDRSTGELLQEYKGHICKSF-------KTDC  234 (277)
Q Consensus       184 -----~-~~v~~~~~s~~~~~l~~~~~d-----~-----------~i~~wd~~~~~~~~~~~~~~~~~~-------~~~~  234 (277)
                           + .....++++|+...+..+...     +           +|.-.|+++|+....|+...+...       ....
T Consensus       227 ~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~  306 (527)
T TIGR03075       227 AWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILF  306 (527)
T ss_pred             ccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEE
Confidence                 0 112346788876666655421     2           567788999999887764221111       1111


Q ss_pred             EecCCCc---eEEeecCCCeEEEEECcCccce
Q 023772          235 CLTNSDA---HVTGGSEDGYIYFWDLVDASVV  263 (277)
Q Consensus       235 ~~~~~~~---~l~sgs~d~~i~iwd~~~~~~~  263 (277)
                      -+..+|+   .++.+.++|.+++.|..+|+++
T Consensus       307 d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       307 DLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             EeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            1223555   6889999999999999999986

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.49  E-value=0.032  Score=44.00  Aligned_cols=180  Identities=11%  Similarity=0.122  Sum_probs=97.7

Q ss_pred             eeeccCCcEEEEEEeCCCCEE-EEEeCCCcEEEEcCCCCeeEEEEecc-CccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772           13 VLKGHEGAVLAARFNGDGNYC-LSCGKDRTIRLWNPHRGIHIKTYKSH-GREVRDVHVTADNSKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        13 ~l~~H~~~V~~~~~~~~~~~l-~s~s~d~~v~iwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~   90 (277)
                      .+.+=...+..+.|+|+.+.| +.....+.|...+. +|+.++.+.-. .+..-.+++..++.++++.-.++.+.++++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            355656669999999986644 45677777777775 57777776544 3678899998888777776678999999884


Q ss_pred             CCc--e----eEEee-----cccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeE
Q 023772           91 TGR--V----IRKFR-----GHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEI  159 (277)
Q Consensus        91 ~~~--~----~~~~~-----~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (277)
                      ...  .    ...+.     .++..+-.++|.+..+.++.+-......+|.++...                        
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~------------------------  150 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP------------------------  150 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT------------------------
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc------------------------
Confidence            321  1    11121     245568899999987777766555445555443210                        


Q ss_pred             EEeecCCcEEEEEccCCcccccCCCCCeeEEEEeCC-CCEEEEEecCCeEEEEECCCCceEEEEe
Q 023772          160 IGGSVDGTVRTFDIRVGRELSDDLGQPVNCISMSND-GNCILASCLDSTLRLLDRSTGELLQEYK  223 (277)
Q Consensus       160 ~~g~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~  223 (277)
                          .+..+.+.+...-.. ....-..+..+.++|. +.+++.+...+.|-.+| .+|+.+..+.
T Consensus       151 ----~~~~~~~~~~~~~~~-~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~  209 (248)
T PF06977_consen  151 ----GGFDLFVSDDQDLDD-DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLS  209 (248)
T ss_dssp             -----SS--EEEE-HHHH--HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE
T ss_pred             ----Cccceeecccccccc-ccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEE
Confidence                011111111110000 0111234678899986 45667778888999999 5688776654

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.47  E-value=0.004  Score=55.95  Aligned_cols=109  Identities=6%  Similarity=0.072  Sum_probs=83.4

Q ss_pred             EEEEEeCCCCEEEEEe----CCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE
Q 023772           22 LAARFNGDGNYCLSCG----KDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRK   97 (277)
Q Consensus        22 ~~~~~~~~~~~l~s~s----~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~   97 (277)
                      +-..|+|...+++.++    ..|+|-||- .+|++.+...- .-.+++++|+|..-.|+.|-.-|.+.+|...+.+.-..
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv   96 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV   96 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc-ceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence            3456778777777554    458888884 45554433221 12346799999988888888889999999887666555


Q ss_pred             eecccCceeEEEEecCCCEEEEEeCCCcEEEEeCc
Q 023772           98 FRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR  132 (277)
Q Consensus        98 ~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~  132 (277)
                      ...|+.+|..+.|+++|..++|+..=|.+.+|...
T Consensus        97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            66799999999999999999999999999999764

>PHA02713 hypothetical protein; Provisional

Probab=97.45  E-value=0.006  Score=54.33  Aligned_cols=194  Identities=10%  Similarity=0.056  Sum_probs=92.0

Q ss_pred             CCCEEEEEeCC------CcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCc--ee
Q 023772           29 DGNYCLSCGKD------RTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDR-----QIFYWDVSTGR--VI   95 (277)
Q Consensus        29 ~~~~l~s~s~d------~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~-----~v~~wd~~~~~--~~   95 (277)
                      ++...+.||.+      ..+-.||+.++.....-.-....-.......+++..+.||.++     ++..||..+++  .+
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~  382 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML  382 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence            45566666653      2466778776643221111111111122223566667777653     47889987642  22


Q ss_pred             EEeecccCceeEEEEecCCCEEEEEeCCC-----------------------cEEEEeCccCCCcceEeeccccCcEEEE
Q 023772           96 RKFRGHESEVNAVKFNEYSSVVVSAGYDQ-----------------------SLRAWDCRSHSTEPIQIIDSFQDSVMSV  152 (277)
Q Consensus        96 ~~~~~h~~~v~~i~~~~~~~~l~s~~~d~-----------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~  152 (277)
                      ..+.........+  .-++++.+.||.++                       ++..||+.+..-..+..+.........+
T Consensus       383 ~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~  460 (557)
T PHA02713        383 PDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV  460 (557)
T ss_pred             CCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEE
Confidence            2222111111112  22466777777653                       4677887653211111111111111223


Q ss_pred             EecCCeEEEeecC------CcEEEEEccCCccccc--CCCC--CeeEEEEeCCCCEEEEEecCC--eEEEEECCCCceEE
Q 023772          153 CLTKTEIIGGSVD------GTVRTFDIRVGRELSD--DLGQ--PVNCISMSNDGNCILASCLDS--TLRLLDRSTGELLQ  220 (277)
Q Consensus       153 ~~~~~~~~~g~~d------~~i~i~d~~~~~~~~~--~~~~--~v~~~~~s~~~~~l~~~~~d~--~i~~wd~~~~~~~~  220 (277)
                      ...+.-.+.|+.+      ..+..||..+...+..  ....  ....++. -+|..+++|+.|+  .+..||..+++...
T Consensus       461 ~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~-~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~  539 (557)
T PHA02713        461 SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL-HDNTIMMLHCYESYMLQDTFNVYTYEWNH  539 (557)
T ss_pred             EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE-ECCEEEEEeeecceeehhhcCcccccccc
Confidence            3444445556543      2356799886212211  1111  1111222 2678888999888  67778887776544


Q ss_pred             EEecc
Q 023772          221 EYKGH  225 (277)
Q Consensus       221 ~~~~~  225 (277)
                      ....|
T Consensus       540 ~~~~~  544 (557)
T PHA02713        540 ICHQH  544 (557)
T ss_pred             hhhhc
Confidence            33333

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.42  E-value=0.06  Score=45.65  Aligned_cols=246  Identities=14%  Similarity=0.122  Sum_probs=149.4

Q ss_pred             EEEEEEeCCCCEEEEE--eCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEE
Q 023772           21 VLAARFNGDGNYCLSC--GKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKL-ISCGGDRQIFYWDVSTGRVIRK   97 (277)
Q Consensus        21 V~~~~~~~~~~~l~s~--s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~t~s~d~~v~~wd~~~~~~~~~   97 (277)
                      ...+.+.+++..+...  ..+ .+..-+............-......+++++.++++ ++...++.|.+.|.++.+....
T Consensus        33 ~~~v~~~~~g~~~~v~~~~~~-~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~  111 (381)
T COG3391          33 PGGVAVNPDGTQVYVANSGSN-DVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS  111 (381)
T ss_pred             CceeEEcCccCEEEEEeecCc-eeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence            4456677777544433  233 45555544222111111111345677888888754 4555678999999888777766


Q ss_pred             eecccCceeEEEEecCCCEEEEEeC---CCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEE-EeecCCcEEEEEc
Q 023772           98 FRGHESEVNAVKFNEYSSVVVSAGY---DQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEII-GGSVDGTVRTFDI  173 (277)
Q Consensus        98 ~~~h~~~v~~i~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~d~~i~i~d~  173 (277)
                      ..--. .-..+.+.++++.+..+..   ++++.+.|..+...... ........-..+..+++.++ +-..++.+.+.|.
T Consensus       112 ~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~-~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~  189 (381)
T COG3391         112 IPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT-IPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDT  189 (381)
T ss_pred             eeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE-EecCCCcceEEECCCCCeEEEEecCCCeEEEEeC
Confidence            54333 4456899999877666655   67888887655432222 21111112233444455444 4457889999997


Q ss_pred             cCCcccc------cCCCCCeeEEEEeCCCCEEEEEecC---CeEEEEECCCCceEEE-EeccccceeeeeeEecCCCceE
Q 023772          174 RVGRELS------DDLGQPVNCISMSNDGNCILASCLD---STLRLLDRSTGELLQE-YKGHICKSFKTDCCLTNSDAHV  243 (277)
Q Consensus       174 ~~~~~~~------~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l  243 (277)
                      .......      .........+.++|+|+++...-..   +.+...|..++..... +.... . ........|++.++
T Consensus       190 ~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~-~-~~~~v~~~p~g~~~  267 (381)
T COG3391         190 SGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGS-G-APRGVAVDPAGKAA  267 (381)
T ss_pred             CCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccccc-C-CCCceeECCCCCEE
Confidence            6654442      1223345678999999966555433   5899999988877654 22221 1 23345678999988


Q ss_pred             Eee-cCCCeEEEEECcCccceeeeccCcc
Q 023772          244 TGG-SEDGYIYFWDLVDASVVAKFKAHSL  271 (277)
Q Consensus       244 ~sg-s~d~~i~iwd~~~~~~~~~~~~h~~  271 (277)
                      ... +..+.+.+-|..+..+...+.....
T Consensus       268 yv~~~~~~~V~vid~~~~~v~~~~~~~~~  296 (381)
T COG3391         268 YVANSQGGTVSVIDGATDRVVKTGPTGNE  296 (381)
T ss_pred             EEEecCCCeEEEEeCCCCceeeeeccccc
Confidence            876 4458899999999888877665443

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.42  E-value=0.092  Score=48.42  Aligned_cols=232  Identities=15%  Similarity=0.163  Sum_probs=119.1

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCeeEEEEeccCc--------cEEEEEEc----------------CCCCEEEEEeCCCcEE
Q 023772           30 GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGR--------EVRDVHVT----------------ADNSKLISCGGDRQIF   85 (277)
Q Consensus        30 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~--------~v~~~~~~----------------~~~~~l~t~s~d~~v~   85 (277)
                      +..++.|+.++.|.-.|..+|+.+-.+.....        .++.+.+-                .+.++|+.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            56778888899999999999988777653221        12223332                1345888899999999


Q ss_pred             EEECCCCceeEEeecccCcee-------------EEEEec--CCCEEEEEeC----------CCcEEEEeCccCCCcceE
Q 023772           86 YWDVSTGRVIRKFRGHESEVN-------------AVKFNE--YSSVVVSAGY----------DQSLRAWDCRSHSTEPIQ  140 (277)
Q Consensus        86 ~wd~~~~~~~~~~~~h~~~v~-------------~i~~~~--~~~~l~s~~~----------d~~i~iwd~~~~~~~~~~  140 (277)
                      -.|.++|+....|.. ...|.             .+.-.|  .+..++.|+.          +|.|+-+|.++++.....
T Consensus       274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            999999999877642 21111             001111  1335555542          688999998876532221


Q ss_pred             eeccccCcEEEEEecCCeEEEeecCC-cEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceE
Q 023772          141 IIDSFQDSVMSVCLTKTEIIGGSVDG-TVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELL  219 (277)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~g~~d~-~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~  219 (277)
                      .... +.. ......+.....++.+. ..-.||.+.+.... ..+.+  +..+-...+.....-..++|.-.|.++|+..
T Consensus       353 ~~g~-p~~-~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~-ptGn~--~pd~~g~~r~~~~n~y~~slvALD~~TGk~~  427 (764)
T TIGR03074       353 DPGN-PDP-TAPPAPGETYTRNTPNSWSVASYDEKLGLVYL-PMGNQ--TPDQWGGDRTPADEKYSSSLVALDATTGKER  427 (764)
T ss_pred             ecCC-CCc-ccCCCCCCEeccCCCCccCceEEcCCCCeEEE-eCCCc--cccccCCccccCcccccceEEEEeCCCCceE
Confidence            1110 000 00000111111111111 12223333322111 00000  0000000000001122456777888899888


Q ss_pred             EEEeccccce-------eeeeeEecC-CCc---eEEeecCCCeEEEEECcCccceeeec
Q 023772          220 QEYKGHICKS-------FKTDCCLTN-SDA---HVTGGSEDGYIYFWDLVDASVVAKFK  267 (277)
Q Consensus       220 ~~~~~~~~~~-------~~~~~~~~~-~~~---~l~sgs~d~~i~iwd~~~~~~~~~~~  267 (277)
                      ..|+...+..       .....-+.. +++   .++.++.+|.+++.|.++|+.+-..+
T Consensus       428 W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~  486 (764)
T TIGR03074       428 WVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE  486 (764)
T ss_pred             EEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence            7775411110       111111222 443   68899999999999999999886543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.40  E-value=0.0059  Score=53.60  Aligned_cols=117  Identities=13%  Similarity=0.168  Sum_probs=87.7

Q ss_pred             cCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee-EEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCc
Q 023772           59 HGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVI-RKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTE  137 (277)
Q Consensus        59 h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~-~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  137 (277)
                      +...|.--+++..+++++-|+.-|.+.+|+-..++.. ....+....+..+..+++..+++.|+..|.|.++-++...+.
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence            3455667778888999999999999999998777643 233345566677888999999999999999999988764332


Q ss_pred             ceEee----ccccCcEEEEEecCCe--EEEeecCCcEEEEEccC
Q 023772          138 PIQII----DSFQDSVMSVCLTKTE--IIGGSVDGTVRTFDIRV  175 (277)
Q Consensus       138 ~~~~~----~~~~~~~~~~~~~~~~--~~~g~~d~~i~i~d~~~  175 (277)
                      ....+    ..|...|++++|+++.  +.+|...|+|..-.+..
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            22221    1256778999998765  88999899998877665

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.40  E-value=0.069  Score=45.73  Aligned_cols=175  Identities=15%  Similarity=0.171  Sum_probs=91.7

Q ss_pred             cEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc------eeEEeecccCceeEEEEecCC
Q 023772           41 TIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGR------VIRKFRGHESEVNAVKFNEYS  114 (277)
Q Consensus        41 ~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~------~~~~~~~h~~~v~~i~~~~~~  114 (277)
                      .|+||+. .|+.+..+.--.+.+.++.|..+ ..|+....||.++++|+....      .+....-....+....+...|
T Consensus        62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G  139 (410)
T PF04841_consen   62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG  139 (410)
T ss_pred             EEEEECC-CCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence            5899985 46677766655589999999875 566677899999999986333      111111112222222333345


Q ss_pred             CEEEEEeCCCcEEEEeCccCCCc-ceEeecc----------ccC--cEEEEEecCCeEEEeecCCcEEEEEccCCccccc
Q 023772          115 SVVVSAGYDQSLRAWDCRSHSTE-PIQIIDS----------FQD--SVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSD  181 (277)
Q Consensus       115 ~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~----------~~~--~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~  181 (277)
                      -.++++  ++.+.+-+  ....+ .......          ...  .+..+..+....+....++.+.+.+-.....  .
T Consensus       140 ivvLt~--~~~~~~v~--n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~--i  213 (410)
T PF04841_consen  140 IVVLTG--NNRFYVVN--NIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ--I  213 (410)
T ss_pred             EEEECC--CCeEEEEe--CccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc--c
Confidence            444443  33333322  11110 0000000          000  0111111222233334445555333222111  1


Q ss_pred             CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEe
Q 023772          182 DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYK  223 (277)
Q Consensus       182 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~  223 (277)
                      ....++..|++||+|++++.-..+|.+.+....-.+...++.
T Consensus       214 ~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~  255 (410)
T PF04841_consen  214 DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD  255 (410)
T ss_pred             cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence            123589999999999999988889999888765444444443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.22  E-value=0.0018  Score=59.43  Aligned_cols=102  Identities=17%  Similarity=0.230  Sum_probs=76.1

Q ss_pred             CCCCEEEEEeCCCcEEEEcCCCCee-EEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCcee
Q 023772           28 GDGNYCLSCGKDRTIRLWNPHRGIH-IKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVN  106 (277)
Q Consensus        28 ~~~~~l~s~s~d~~v~iwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~  106 (277)
                      -.+.+++.|+..|.+-..|....-. ...=+.-.++|++++|+.++..++.|-.+|.|.+||+..+++.+-+..|..+..
T Consensus        97 ~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t  176 (1206)
T KOG2079|consen   97 IVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT  176 (1206)
T ss_pred             eeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence            3456788888888888888654311 112223457999999999999999999999999999999998888777766665


Q ss_pred             EEEE---ecCCCEEEEEeCCCcEEEEeC
Q 023772          107 AVKF---NEYSSVVVSAGYDQSLRAWDC  131 (277)
Q Consensus       107 ~i~~---~~~~~~l~s~~~d~~i~iwd~  131 (277)
                      ++-+   ..++..++++...|.  +|.+
T Consensus       177 ~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  177 GVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            5544   456667888877776  5654

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.21  E-value=0.0086  Score=55.78  Aligned_cols=110  Identities=18%  Similarity=0.312  Sum_probs=76.4

Q ss_pred             EEEEeCCCCEEEEE----eCC-CcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEE---eCCCcEEEEECCCCc-
Q 023772           23 AARFNGDGNYCLSC----GKD-RTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISC---GGDRQIFYWDVSTGR-   93 (277)
Q Consensus        23 ~~~~~~~~~~l~s~----s~d-~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~---s~d~~v~~wd~~~~~-   93 (277)
                      .+.|-.||++++..    ..+ +.+||||-+ |..-.+-+.-.+--.+++|-|.|..+++-   ..|+.|.+|.-+.-+ 
T Consensus       200 ~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~h  278 (1265)
T KOG1920|consen  200 SISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRH  278 (1265)
T ss_pred             eEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccc
Confidence            58999999998872    334 899999976 54433333334445789999999999886   345679998754321 


Q ss_pred             --eeEEeecccCceeEEEEecCCCEEEE---EeCCCcEEEEeCcc
Q 023772           94 --VIRKFRGHESEVNAVKFNEYSSVVVS---AGYDQSLRAWDCRS  133 (277)
Q Consensus        94 --~~~~~~~h~~~v~~i~~~~~~~~l~s---~~~d~~i~iwd~~~  133 (277)
                        -.-.+.....++..++|+.++..|+.   ......|++|-..+
T Consensus       279 g~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  279 GEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             cccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence              12223333455899999999999887   55555599997654

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.21  E-value=0.11  Score=44.40  Aligned_cols=177  Identities=10%  Similarity=0.110  Sum_probs=90.6

Q ss_pred             cEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCC----CcceEeeccccCcEEEEEecCCe
Q 023772           83 QIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHS----TEPIQIIDSFQDSVMSVCLTKTE  158 (277)
Q Consensus        83 ~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  158 (277)
                      .|.+|+. .|+++.++..-.+.+-++.|..+. .|+....||.+++||+....    ...+....-....+.......+.
T Consensus        62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G  139 (410)
T PF04841_consen   62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG  139 (410)
T ss_pred             EEEEECC-CCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence            4888875 466666665555889999998854 55566799999999985322    00000000000111111222344


Q ss_pred             EEEeecCCcEEEEE-ccCCcc------cccCCC----C-Cee-EEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEecc
Q 023772          159 IIGGSVDGTVRTFD-IRVGRE------LSDDLG----Q-PVN-CISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGH  225 (277)
Q Consensus       159 ~~~g~~d~~i~i~d-~~~~~~------~~~~~~----~-~v~-~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~  225 (277)
                      ++.-..++.+.+.+ ......      +.....    . ... ...++.+....+....++.+++.+....+.   ... 
T Consensus       140 ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~~-  215 (410)
T PF04841_consen  140 IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---IDS-  215 (410)
T ss_pred             EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---ccC-
Confidence            44444444444322 111100      000000    0 000 023444454455555555666444332211   111 


Q ss_pred             ccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeec
Q 023772          226 ICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFK  267 (277)
Q Consensus       226 ~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~  267 (277)
                        ......+++||+++++|.-..+|.+.+...+=.+.+-++.
T Consensus       216 --~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~  255 (410)
T PF04841_consen  216 --DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD  255 (410)
T ss_pred             --CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence              1234667889999999988888999888765555544444

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.15  E-value=0.002  Score=48.93  Aligned_cols=103  Identities=14%  Similarity=0.100  Sum_probs=65.1

Q ss_pred             CCEEEEEeCCCcEEEEcCCCC-eeEEEEeccCccEEEEE-EcCCCCEEEEEeCCCcEEEEECCCCceeEEeeccc-Ccee
Q 023772           30 GNYCLSCGKDRTIRLWNPHRG-IHIKTYKSHGREVRDVH-VTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHE-SEVN  106 (277)
Q Consensus        30 ~~~l~s~s~d~~v~iwd~~~~-~~~~~~~~h~~~v~~~~-~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~-~~v~  106 (277)
                      +..|+.|+.||.|.+|+..-. .....+..-...|.++- ...++.+..+++.|+.++.|+..-++.+.....|+ .++.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e  149 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE  149 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence            457788899999999987621 11111111112222222 12234477889999999999999888887777777 5555


Q ss_pred             EEEEecCCCEEEEE--eCCCcEEEEeCc
Q 023772          107 AVKFNEYSSVVVSA--GYDQSLRAWDCR  132 (277)
Q Consensus       107 ~i~~~~~~~~l~s~--~~d~~i~iwd~~  132 (277)
                      .......++.+..+  |.|..++.|++.
T Consensus       150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  150 ELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             eeEEecCCceEEeeccccchhhhhcchh
Confidence            55555555666665  666666666654

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.15  E-value=0.0027  Score=54.92  Aligned_cols=74  Identities=5%  Similarity=0.075  Sum_probs=65.2

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCcee-EEEEecCCCEEEEEeCCCcEEEEeCccCC
Q 023772           61 REVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVN-AVKFNEYSSVVVSAGYDQSLRAWDCRSHS  135 (277)
Q Consensus        61 ~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~-~i~~~~~~~~l~s~~~d~~i~iwd~~~~~  135 (277)
                      -.+.-+.|+|.-..|+++..+|.+-+..+. .+.+.++.-|..++. +++|.|||+.++.|-.||+|++.|...+.
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~   95 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG   95 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence            457788999999999999999999999887 777888886777776 99999999999999999999999987643

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.09  E-value=0.005  Score=56.63  Aligned_cols=108  Identities=20%  Similarity=0.314  Sum_probs=74.1

Q ss_pred             cEEEEEecCCeEEEeecCCcEEEEEccCCcc--c-ccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEec
Q 023772          148 SVMSVCLTKTEIIGGSVDGTVRTFDIRVGRE--L-SDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKG  224 (277)
Q Consensus       148 ~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~--~-~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~  224 (277)
                      .+.+.+.....++.|+..|.+-..|+...-.  . ....+.+|++++|+.+|+.++.|-.+|.|.+||...++.++.+.-
T Consensus        91 ~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e  170 (1206)
T KOG2079|consen   91 GVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITE  170 (1206)
T ss_pred             ceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeee
Confidence            3444444445577788888888888765322  1 123457999999999999999999999999999999999988876


Q ss_pred             cccceeeeee-EecCCCceEEeecCCCeEEEEEC
Q 023772          225 HICKSFKTDC-CLTNSDAHVTGGSEDGYIYFWDL  257 (277)
Q Consensus       225 ~~~~~~~~~~-~~~~~~~~l~sgs~d~~i~iwd~  257 (277)
                      +..+....-. -...++..+.++..-|.  +|+.
T Consensus       171 ~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  171 HGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             cCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            5443322221 22344446777766665  5653

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.99  E-value=0.17  Score=42.45  Aligned_cols=233  Identities=16%  Similarity=0.195  Sum_probs=117.3

Q ss_pred             eCCCCEEEEE---------eCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE-
Q 023772           27 NGDGNYCLSC---------GKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIR-   96 (277)
Q Consensus        27 ~~~~~~l~s~---------s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~-   96 (277)
                      |||+++++..         +..+.+.|||+.+++....... ...+....|+|+++.++-.. ++.|.+++..+++..+ 
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l   78 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL   78 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence            4666666652         3346788999998765443333 56789999999999988775 5789999987774432 


Q ss_pred             Eeec-------c---------cCceeEEEEecCCCEEEEEeC-CCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeE
Q 023772           97 KFRG-------H---------ESEVNAVKFNEYSSVVVSAGY-DQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEI  159 (277)
Q Consensus        97 ~~~~-------h---------~~~v~~i~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (277)
                      +..+       -         -..-.++-|+|+++.|+.... +..|+.+.+........     .......+..-    
T Consensus        79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~-----~yp~~~~~~YP----  149 (353)
T PF00930_consen   79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS-----QYPEVESIRYP----  149 (353)
T ss_dssp             ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE-----SS-EEEEEE------
T ss_pred             ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc-----cCCcccccccC----
Confidence            1111       0         112356779999998877644 34455544322111100     00011111100    


Q ss_pred             EEeecCC--cEEEEEccCCcccc--c-----CCCCCeeEEEEeCCCCEEEEEecCC-----eEEEEECCCCceEEEEecc
Q 023772          160 IGGSVDG--TVRTFDIRVGRELS--D-----DLGQPVNCISMSNDGNCILASCLDS-----TLRLLDRSTGELLQEYKGH  225 (277)
Q Consensus       160 ~~g~~d~--~i~i~d~~~~~~~~--~-----~~~~~v~~~~~s~~~~~l~~~~~d~-----~i~~wd~~~~~~~~~~~~~  225 (277)
                      ..|..+-  .+.++|+.+++...  .     ....-+..+.|.+++..++..-.++     .+.++|..+++....+...
T Consensus       150 k~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~  229 (353)
T PF00930_consen  150 KAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEET  229 (353)
T ss_dssp             BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEE
T ss_pred             CCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEec
Confidence            0011111  35567887665321  1     1233577899999998454443222     4667788776554333211


Q ss_pred             c-cce-eeeeeEec-C-CCceEEeecCCCe--EEEEECcCccceeeeccCcc
Q 023772          226 I-CKS-FKTDCCLT-N-SDAHVTGGSEDGY--IYFWDLVDASVVAKFKAHSL  271 (277)
Q Consensus       226 ~-~~~-~~~~~~~~-~-~~~~l~sgs~d~~--i~iwd~~~~~~~~~~~~h~~  271 (277)
                      . ... ......+. + ++.++.....||.  |++++...+. .+.+....-
T Consensus       230 ~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~  280 (353)
T PF00930_consen  230 SDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDW  280 (353)
T ss_dssp             SSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS
T ss_pred             CCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCce
Confidence            1 000 11122232 3 4445555557776  4455665554 335543333

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PHA03098 kelch-like protein; Provisional

Probab=96.98  E-value=0.11  Score=46.19  Aligned_cols=188  Identities=12%  Similarity=0.128  Sum_probs=85.7

Q ss_pred             CCCCEEEEEeCCC------cEEEEECCCCceeE--EeecccCceeEEEEecCCCEEEEEeCC-----CcEEEEeCccCCC
Q 023772           70 ADNSKLISCGGDR------QIFYWDVSTGRVIR--KFRGHESEVNAVKFNEYSSVVVSAGYD-----QSLRAWDCRSHST  136 (277)
Q Consensus        70 ~~~~~l~t~s~d~------~v~~wd~~~~~~~~--~~~~h~~~v~~i~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~  136 (277)
                      .++..++.||.++      .+..||..+++-..  .+........ +. .-++++.+.||.+     ..+..||+.+..-
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~-~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W  370 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPG-VT-VFNNRIYVIGGIYNSISLNTVESWKPGESKW  370 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccce-EE-EECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence            3456666776542      56778877654211  1111111111 21 2346677777765     3467787764321


Q ss_pred             cceEeeccccCcEEEEEecCCeEEEeecC------CcEEEEEccCCc--cccc-CCCCCeeEEEEeCCCCEEEEEecC--
Q 023772          137 EPIQIIDSFQDSVMSVCLTKTEIIGGSVD------GTVRTFDIRVGR--ELSD-DLGQPVNCISMSNDGNCILASCLD--  205 (277)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~d------~~i~i~d~~~~~--~~~~-~~~~~v~~~~~s~~~~~l~~~~~d--  205 (277)
                      .....+.............+...+.||.+      +.+..||+.+.+  .... .....-.+++ ..++..++.|+.+  
T Consensus       371 ~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~  449 (534)
T PHA03098        371 REEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAI-YHDGKIYVIGGISYI  449 (534)
T ss_pred             eeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEE-EECCEEEEECCccCC
Confidence            11110111111112223334445555532      357788887542  1111 0011111222 2355666666543  


Q ss_pred             ------CeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCC-----CeEEEEECcCccc
Q 023772          206 ------STLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSED-----GYIYFWDLVDASV  262 (277)
Q Consensus       206 ------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d-----~~i~iwd~~~~~~  262 (277)
                            ..+..||..+++.... ............+. -++++.+.|+.+     +.+..||..+.+.
T Consensus       450 ~~~~~~~~v~~yd~~~~~W~~~-~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W  515 (534)
T PHA03098        450 DNIKVYNIVESYNPVTNKWTEL-SSLNFPRINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTNTW  515 (534)
T ss_pred             CCCcccceEEEecCCCCceeeC-CCCCcccccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence                  1378899887654321 11110111111122 245555555443     5789999887654

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.98  E-value=0.004  Score=35.10  Aligned_cols=35  Identities=17%  Similarity=0.156  Sum_probs=30.4

Q ss_pred             CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCce
Q 023772          183 LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGEL  218 (277)
Q Consensus       183 ~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~  218 (277)
                      ...+|.+++|+|....|+.+..||.|.+|.+ +++.
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            3467999999999999999999999999998 4543

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.98  E-value=0.19  Score=42.77  Aligned_cols=205  Identities=15%  Similarity=0.147  Sum_probs=107.2

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-------------------------------------------eeEEe
Q 023772           62 EVRDVHVTADNSKLISCGGDRQIFYWDVSTGR-------------------------------------------VIRKF   98 (277)
Q Consensus        62 ~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~-------------------------------------------~~~~~   98 (277)
                      .|+.+.|.++..-|+.|-..|.|-+|.....+                                           +..-+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            46777777777777777777777776542110                                           01112


Q ss_pred             ecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeecc------ccCcEEEEEec-----C-----CeEEEe
Q 023772           99 RGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDS------FQDSVMSVCLT-----K-----TEIIGG  162 (277)
Q Consensus        99 ~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~-----~-----~~~~~g  162 (277)
                      ....++|++++.+. --+++.|..+|.+.+.|+|.+.......+..      ....+..+.|.     .     -.+++|
T Consensus        83 ~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            23467899888864 4589999999999999998643211111111      11223334332     1     137889


Q ss_pred             ecCCcEEEEEccC-C-cccc-------cCCCCCeeEEE-EeCC--------------------CCEEEEEecCCeEEEEE
Q 023772          163 SVDGTVRTFDIRV-G-RELS-------DDLGQPVNCIS-MSND--------------------GNCILASCLDSTLRLLD  212 (277)
Q Consensus       163 ~~d~~i~i~d~~~-~-~~~~-------~~~~~~v~~~~-~s~~--------------------~~~l~~~~~d~~i~~wd  212 (277)
                      ...|.+.+|.+.- . ..+.       .....++..+. |+.+                    -.-++....+..+|++.
T Consensus       162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~  241 (395)
T PF08596_consen  162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK  241 (395)
T ss_dssp             ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred             eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence            9999999998752 1 1111       12233333332 3211                    11234445577899999


Q ss_pred             CCCCceEEEEeccccceeeeeeEe-----cCCCceEEeecCCCeEEEEECcCccceeeeccC
Q 023772          213 RSTGELLQEYKGHICKSFKTDCCL-----TNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAH  269 (277)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h  269 (277)
                      ..+.+........  ......+++     ...+..|+.=..+|.|++|.+...+.+..++-+
T Consensus       242 ~~~~k~~~K~~~~--~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~  301 (395)
T PF08596_consen  242 PPKSKGAHKSFDD--PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLP  301 (395)
T ss_dssp             TT---EEEEE-SS---EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-S
T ss_pred             CCCCcccceeecc--ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCC
Confidence            9877765543322  111122222     234566777789999999999999888877653

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PHA03098 kelch-like protein; Provisional

Probab=96.96  E-value=0.087  Score=46.89  Aligned_cols=186  Identities=9%  Similarity=0.063  Sum_probs=81.9

Q ss_pred             CCCEEEEEeCCC------cEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCc--ee
Q 023772           29 DGNYCLSCGKDR------TIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGD-----RQIFYWDVSTGR--VI   95 (277)
Q Consensus        29 ~~~~l~s~s~d~------~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d-----~~v~~wd~~~~~--~~   95 (277)
                      ++...+.||.++      .+..||..+.+....-.............-++..++.||.+     ..+..||..+++  ..
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~  373 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREE  373 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence            345556666543      46678877765432211110111111122256666777765     346778876543  11


Q ss_pred             EEeecccCceeEEEEecCCCEEEEEeCC------CcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecC----
Q 023772           96 RKFRGHESEVNAVKFNEYSSVVVSAGYD------QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVD----  165 (277)
Q Consensus        96 ~~~~~h~~~v~~i~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d----  165 (277)
                      ..+...... .++ ..-++++.+.||.+      ..+..||+.+..-.....+.........+...+..++.|+.+    
T Consensus       374 ~~lp~~r~~-~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~  451 (534)
T PHA03098        374 PPLIFPRYN-PCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDN  451 (534)
T ss_pred             CCcCcCCcc-ceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCC
Confidence            111111111 111 22345666777632      357888876532111111110011112223334444555542    


Q ss_pred             ----CcEEEEEccCCc--ccccC-CCCCeeEEEEeCCCCEEEEEecC-----CeEEEEECCCCc
Q 023772          166 ----GTVRTFDIRVGR--ELSDD-LGQPVNCISMSNDGNCILASCLD-----STLRLLDRSTGE  217 (277)
Q Consensus       166 ----~~i~i~d~~~~~--~~~~~-~~~~v~~~~~s~~~~~l~~~~~d-----~~i~~wd~~~~~  217 (277)
                          ..+.+||..+.+  .+... ....-.+++. .++..++.|+.+     ..+..||..+++
T Consensus       452 ~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        452 IKVYNIVESYNPVTNKWTELSSLNFPRINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             CcccceEEEecCCCCceeeCCCCCcccccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence                137788887643  11111 1111111121 256666666654     357777776654

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.91  E-value=0.18  Score=41.40  Aligned_cols=199  Identities=14%  Similarity=0.196  Sum_probs=112.9

Q ss_pred             EEEEeCCCCEEEE--EeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceeEE--
Q 023772           23 AARFNGDGNYCLS--CGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS-TGRVIRK--   97 (277)
Q Consensus        23 ~~~~~~~~~~l~s--~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~-~~~~~~~--   97 (277)
                      ..+++.||++++.  .+--.+|-|-|+..++.+.++.-.  .|..+-=. .+..+.+-..||++....+. .|+..++  
T Consensus        99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~iyP~-~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t  175 (342)
T PF06433_consen   99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLIYPS-GNRGFSMLCGDGSLLTVTLDADGKEAQKST  175 (342)
T ss_dssp             GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEEEEE-ETTEEEEEETTSCEEEEEETSTSSEEEEEE
T ss_pred             ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEEEec-CCCceEEEecCCceEEEEECCCCCEeEeec
Confidence            3577888887775  455678888899888888877632  33333222 23567788889999988887 4554322  


Q ss_pred             --eecccCcee-EEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeecc----------cc--CcEEEEEecCCeEEE-
Q 023772           98 --FRGHESEVN-AVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDS----------FQ--DSVMSVCLTKTEIIG-  161 (277)
Q Consensus        98 --~~~h~~~v~-~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----------~~--~~~~~~~~~~~~~~~-  161 (277)
                        |..-..++. .-.+...+..++--+.+|.|+--|+.............          .+  -...++....+.+.+ 
T Consensus       176 ~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvL  255 (342)
T PF06433_consen  176 KVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVL  255 (342)
T ss_dssp             EESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEE
T ss_pred             cccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEE
Confidence              111122222 22333444455556888988888876543221111110          00  112333333333322 


Q ss_pred             --eecCC-------cEEEEEccCCcccccC-CCCCeeEEEEeCCCC-EEEEE-ecCCeEEEEECCCCceEEEEec
Q 023772          162 --GSVDG-------TVRTFDIRVGRELSDD-LGQPVNCISMSNDGN-CILAS-CLDSTLRLLDRSTGELLQEYKG  224 (277)
Q Consensus       162 --g~~d~-------~i~i~d~~~~~~~~~~-~~~~v~~~~~s~~~~-~l~~~-~~d~~i~~wd~~~~~~~~~~~~  224 (277)
                        .+.++       .|-+||+.+++.+... .++++.++.++.+.+ .|++. ..++.+.+||..+|++++.+.+
T Consensus       256 Mh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  256 MHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             EEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             ecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence              11121       3667788888776553 356788999998876 44443 4578999999999999988764

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.90  E-value=0.12  Score=44.42  Aligned_cols=166  Identities=13%  Similarity=0.048  Sum_probs=91.7

Q ss_pred             CceeEEeecccCceeEEEEecCCCEEEEEe---CC-CcEEEEeCccCCCcceEeeccccCcEEEEEecCCe-EEEeecCC
Q 023772           92 GRVIRKFRGHESEVNAVKFNEYSSVVVSAG---YD-QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE-IIGGSVDG  166 (277)
Q Consensus        92 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~---~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~d~  166 (277)
                      +...+.+..-...+..-.|++++..++..+   .. ..+.++++.....+.+..+... .....+.+++.. +++...|+
T Consensus       182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~-~~~P~fspDG~~l~f~~~rdg  260 (425)
T COG0823         182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGN-NGAPAFSPDGSKLAFSSSRDG  260 (425)
T ss_pred             CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCc-cCCccCCCCCCEEEEEECCCC
Confidence            333344444445566677888877655442   22 4588889887655444333222 223344455555 44555566


Q ss_pred             c--EEEEEccCCcccccCCCC-CeeEEEEeCCCCEEEEEec-CC--eEEEEECCCCceEEEEeccccceeeeeeEecCCC
Q 023772          167 T--VRTFDIRVGRELSDDLGQ-PVNCISMSNDGNCILASCL-DS--TLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSD  240 (277)
Q Consensus       167 ~--i~i~d~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~-d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (277)
                      .  |.++|+............ .-..=.|+|+|++|+-.+. .|  .|.++|...+.. +.+........  ...++|+|
T Consensus       261 ~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~--~p~~SpdG  337 (425)
T COG0823         261 SPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNS--NPVWSPDG  337 (425)
T ss_pred             CccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCc--CccCCCCC
Confidence            5  556677665533212211 1224579999998876653 33  466777765544 33332221111  34578999


Q ss_pred             ceEEeec-CCCe--EEEEECcCcc
Q 023772          241 AHVTGGS-EDGY--IYFWDLVDAS  261 (277)
Q Consensus       241 ~~l~sgs-~d~~--i~iwd~~~~~  261 (277)
                      ++++.-+ .+|.  |.+.|+.++.
T Consensus       338 ~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         338 DKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             CEEEEEeccCCceeeEEeccCCCC
Confidence            9877544 3455  6677776655

>PHA02790 Kelch-like protein; Provisional

Probab=96.85  E-value=0.13  Score=45.19  Aligned_cols=104  Identities=11%  Similarity=-0.033  Sum_probs=50.9

Q ss_pred             CCCEEEEEeCCC-----cEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCC--CcEEEEECCCCc--eeEEee
Q 023772           29 DGNYCLSCGKDR-----TIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGD--RQIFYWDVSTGR--VIRKFR   99 (277)
Q Consensus        29 ~~~~l~s~s~d~-----~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d--~~v~~wd~~~~~--~~~~~~   99 (277)
                      ++.+.+.||.++     ++..||+.+++....-..............++...+.||.+  .++..||..+++  .+..+.
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~  350 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL  350 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence            345556777543     46678877765433221111111111122356666777754  457788876542  222222


Q ss_pred             cccCceeEEEEecCCCEEEEEeCCC---cEEEEeCccC
Q 023772          100 GHESEVNAVKFNEYSSVVVSAGYDQ---SLRAWDCRSH  134 (277)
Q Consensus       100 ~h~~~v~~i~~~~~~~~l~s~~~d~---~i~iwd~~~~  134 (277)
                      ......  ....-++++.+.||.++   .+..||+++.
T Consensus       351 ~~r~~~--~~~~~~g~IYviGG~~~~~~~ve~ydp~~~  386 (480)
T PHA02790        351 KPRCNP--AVASINNVIYVIGGHSETDTTTEYLLPNHD  386 (480)
T ss_pred             CCCccc--EEEEECCEEEEecCcCCCCccEEEEeCCCC
Confidence            111111  11223466777777553   4677887643

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.85  E-value=0.077  Score=48.65  Aligned_cols=142  Identities=14%  Similarity=0.190  Sum_probs=93.1

Q ss_pred             CCCEEEE-EeCCCcEEEEcCCCCeeEEEEeccCcc-EEEEEEcC-----CCCEEEEEeCCCcEEEEECCCC--ceeEE-e
Q 023772           29 DGNYCLS-CGKDRTIRLWNPHRGIHIKTYKSHGRE-VRDVHVTA-----DNSKLISCGGDRQIFYWDVSTG--RVIRK-F   98 (277)
Q Consensus        29 ~~~~l~s-~s~d~~v~iwd~~~~~~~~~~~~h~~~-v~~~~~~~-----~~~~l~t~s~d~~v~~wd~~~~--~~~~~-~   98 (277)
                      +.++|+. ......|.--|++.|+.+..++.|... |..++=..     .+..-+.|-.+..+..||..-.  +++.. .
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~  571 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS  571 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence            3445443 345677888899999999999887644 54443221     1234556778889999998743  33321 1


Q ss_pred             e--cccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCe-EEEeecCCcEEEEEc
Q 023772           99 R--GHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE-IIGGSVDGTVRTFDI  173 (277)
Q Consensus        99 ~--~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~d~~i~i~d~  173 (277)
                      .  ......++++-..+| .||.|+.+|.||+||-. +. .....+.+...+|..+..+.+. .+.++.+..|.+++.
T Consensus       572 k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g~-~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t  646 (794)
T PF08553_consen  572 KQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRL-GK-RAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT  646 (794)
T ss_pred             cccccCCCceEEEecCCc-eEEEEeCCCcEEeeccc-ch-hhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence            1  234456666666665 77889999999999943 21 2333455667889888887655 556677788888775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.77  E-value=0.13  Score=46.02  Aligned_cols=186  Identities=14%  Similarity=0.165  Sum_probs=91.5

Q ss_pred             CCCEEEEEeCC------CcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCc--ee
Q 023772           29 DGNYCLSCGKD------RTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDR-----QIFYWDVSTGR--VI   95 (277)
Q Consensus        29 ~~~~l~s~s~d------~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~-----~v~~wd~~~~~--~~   95 (277)
                      ++...++||.|      .++-.||..+++....-.-.......-...-+|...+.||.||     ++-.||.++.+  .+
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v  411 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV  411 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCccccc
Confidence            34677788888      4566788877664432211111111112223667778888886     46677766543  22


Q ss_pred             EEeecccCceeEEEE-ecCCCEEEEEeCCC------cEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCCc-
Q 023772           96 RKFRGHESEVNAVKF-NEYSSVVVSAGYDQ------SLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGT-  167 (277)
Q Consensus        96 ~~~~~h~~~v~~i~~-~~~~~~l~s~~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~-  167 (277)
                      ....   .+...... .-++.+.+.||.|+      ++..||+.+..-.....+............+....+.|+.|+. 
T Consensus       412 a~m~---~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~  488 (571)
T KOG4441|consen  412 APML---TRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTS  488 (571)
T ss_pred             CCCC---cceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCC
Confidence            2111   12222222 23466777777554      4567777654322111111111122233344555677777763 


Q ss_pred             ----EEEEEccCCccccc-CCCCCeeEE-EEeCCCCEEEEEecCCe-----EEEEECCCCc
Q 023772          168 ----VRTFDIRVGRELSD-DLGQPVNCI-SMSNDGNCILASCLDST-----LRLLDRSTGE  217 (277)
Q Consensus       168 ----i~i~d~~~~~~~~~-~~~~~v~~~-~~s~~~~~l~~~~~d~~-----i~~wd~~~~~  217 (277)
                          +..||.++.+=... ....+.... ...-++..++.|+.|+.     +..||..+.+
T Consensus       489 ~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  489 ALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             ccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCCc
Confidence                66788776542111 111111111 11225666778877763     4456655544

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.73  E-value=0.33  Score=41.95  Aligned_cols=221  Identities=11%  Similarity=0.103  Sum_probs=100.0

Q ss_pred             eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 023772           15 KGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRV   94 (277)
Q Consensus        15 ~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~   94 (277)
                      ....-....+.++|+|+.++.++ ||.-.|+.....+...     .+......|.+. +.++.-...++|+++.--..+.
T Consensus        29 g~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~-----~G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~  101 (443)
T PF04053_consen   29 GSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKA-----FGSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNEV  101 (443)
T ss_dssp             EE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEE-----EEE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-T
T ss_pred             CCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcccc-----cCceeEEEEecC-ccEEEEECCCeEEEEEcCcccc
Confidence            34555578899999999988855 6788888754433222     245567888884 4566666688899973222222


Q ss_pred             eEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC--eEEEeecCCcEEEEE
Q 023772           95 IRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--EIIGGSVDGTVRTFD  172 (277)
Q Consensus        95 ~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~i~d  172 (277)
                      ..++.. ...+..+-.   |.+|+..+.+ .|.+||..+...  +..+.-  .++..+.|+++  .++.. .+..+.+++
T Consensus       102 ~k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~--i~~i~v--~~vk~V~Ws~~g~~val~-t~~~i~il~  171 (443)
T PF04053_consen  102 VKSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKL--IRRIDV--SAVKYVIWSDDGELVALV-TKDSIYILK  171 (443)
T ss_dssp             T------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--E--EEEESS---E-EEEEE-TTSSEEEEE--S-SEEEEE
T ss_pred             ceEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcce--eeEEec--CCCcEEEEECCCCEEEEE-eCCeEEEEE
Confidence            223321 112333322   7777766554 899999876432  222222  12566777754  34444 455677755


Q ss_pred             ccCC---------c--cccc-CC-CCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCC
Q 023772          173 IRVG---------R--ELSD-DL-GQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNS  239 (277)
Q Consensus       173 ~~~~---------~--~~~~-~~-~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (277)
                      ....         -  .+.. .. ...|.+..|..+  .++-.... .|+.+--.....+..+.   ...+.+  -..++
T Consensus       172 ~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkYl~~Ge~~~i~~ld---~~~yll--gy~~~  243 (443)
T PF04053_consen  172 YNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKYLVNGETGIIAHLD---KPLYLL--GYLPK  243 (443)
T ss_dssp             E-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEEEETTEEEEEEE-S---S--EEE--EEETT
T ss_pred             ecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEEEEcCCcceEEEcC---CceEEE--EEEcc
Confidence            4322         0  1111 11 456777788755  33333333 56553222222222221   122222  23344


Q ss_pred             CceEEeecCCCeEEEEECcCc
Q 023772          240 DAHVTGGSEDGYIYFWDLVDA  260 (277)
Q Consensus       240 ~~~l~sgs~d~~i~iwd~~~~  260 (277)
                      .+.+.....|+.|..+.++..
T Consensus       244 ~~~ly~~Dr~~~v~~~~ld~~  264 (443)
T PF04053_consen  244 ENRLYLIDRDGNVISYELDLS  264 (443)
T ss_dssp             TTEEEEE-TT--EEEEE--HH
T ss_pred             CCEEEEEECCCCEEEEEECHH
Confidence            456666667777777766543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.73  E-value=0.12  Score=41.08  Aligned_cols=101  Identities=21%  Similarity=0.406  Sum_probs=65.5

Q ss_pred             EEEeCCCCEEEEEeCC-----CcEEEEcCCCC-eeEEEEeccCccEEEEEEcCCCCEEEEEeC------C----------
Q 023772           24 ARFNGDGNYCLSCGKD-----RTIRLWNPHRG-IHIKTYKSHGREVRDVHVTADNSKLISCGG------D----------   81 (277)
Q Consensus        24 ~~~~~~~~~l~s~s~d-----~~v~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~------d----------   81 (277)
                      =.|++||.+|...=+|     |.|-|||...+ ..+..+..|.-....+.+.+|++.++.+..      |          
T Consensus       119 Gvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNlds  198 (366)
T COG3490         119 GVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDS  198 (366)
T ss_pred             cccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhh
Confidence            3589999999876444     78999997753 346678888888899999999998887642      1          


Q ss_pred             --CcEEEEECCCCceeEE--ee--cccCceeEEEEecCCCEEEEEeCCC
Q 023772           82 --RQIFYWDVSTGRVIRK--FR--GHESEVNAVKFNEYSSVVVSAGYDQ  124 (277)
Q Consensus        82 --~~v~~wd~~~~~~~~~--~~--~h~~~v~~i~~~~~~~~l~s~~~d~  124 (277)
                        -++-+.|..+|+++.+  +.  .+.-.|.-++..+++...+-+-..|
T Consensus       199 MePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G  247 (366)
T COG3490         199 MEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRG  247 (366)
T ss_pred             cCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeC
Confidence              1233444445544432  22  2334566666667776666554433

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.67  E-value=0.23  Score=39.33  Aligned_cols=111  Identities=14%  Similarity=0.063  Sum_probs=70.3

Q ss_pred             EEEEEEeCCCCEEEEEeCCC--cEEEEcCCCCeeEEEEeccC-ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE
Q 023772           21 VLAARFNGDGNYCLSCGKDR--TIRLWNPHRGIHIKTYKSHG-REVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRK   97 (277)
Q Consensus        21 V~~~~~~~~~~~l~s~s~d~--~v~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~   97 (277)
                      .-.+.|.++|.++-|.|.-|  .|+.+|+.+++......-.. .--..+... +++...-.-.++...+||.++-+.+.+
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~  125 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGT  125 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEE
Confidence            44688877888888887766  78899999998766544322 112233333 233344455688999999999988888


Q ss_pred             eecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCC
Q 023772           98 FRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHS  135 (277)
Q Consensus        98 ~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~  135 (277)
                      +.- ..+=+.++  .+++.|+.......+..+|+.+..
T Consensus       126 ~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~  160 (264)
T PF05096_consen  126 FPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFK  160 (264)
T ss_dssp             EE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-S
T ss_pred             Eec-CCcceEEE--cCCCEEEEECCccceEEECCcccc
Confidence            763 34557777  445566665666678888876543

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.65  E-value=0.33  Score=41.76  Aligned_cols=188  Identities=16%  Similarity=0.176  Sum_probs=99.0

Q ss_pred             CeeEEEEeccCccEEEEEEcCCCCEEEEEe--CC--CcEEEEECCCCcee--EEeecccCceeEEEEecCCCEEEE-EeC
Q 023772           50 GIHIKTYKSHGREVRDVHVTADNSKLISCG--GD--RQIFYWDVSTGRVI--RKFRGHESEVNAVKFNEYSSVVVS-AGY  122 (277)
Q Consensus        50 ~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s--~d--~~v~~wd~~~~~~~--~~~~~h~~~v~~i~~~~~~~~l~s-~~~  122 (277)
                      +.....+..-...+..-+|+|+++.++-.+  ..  ..+.++|+++++..  .++.++.   ..-+|+||++.++- ...
T Consensus       182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~---~~P~fspDG~~l~f~~~r  258 (425)
T COG0823         182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN---GAPAFSPDGSKLAFSSSR  258 (425)
T ss_pred             CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc---CCccCCCCCCEEEEEECC
Confidence            333444444445677778889888765442  22  35899999987643  3344433   34679999886554 455


Q ss_pred             CCcEEEE--eCccCCCcceEeeccccCcEEEEEecCCeEE-EeecCCc--EEEEEccCCcc--cccCCCCCeeEEEEeCC
Q 023772          123 DQSLRAW--DCRSHSTEPIQIIDSFQDSVMSVCLTKTEII-GGSVDGT--VRTFDIRVGRE--LSDDLGQPVNCISMSND  195 (277)
Q Consensus       123 d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~d~~--i~i~d~~~~~~--~~~~~~~~v~~~~~s~~  195 (277)
                      ||...+|  |+...+...+....... .-.++.+++..++ +....|.  |.++|......  +....... ..-.++|+
T Consensus       259 dg~~~iy~~dl~~~~~~~Lt~~~gi~-~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~-~~p~~Spd  336 (425)
T COG0823         259 DGSPDIYLMDLDGKNLPRLTNGFGIN-TSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGN-SNPVWSPD  336 (425)
T ss_pred             CCCccEEEEcCCCCcceecccCCccc-cCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCC-cCccCCCC
Confidence            6665555  55543322211111111 1233444555544 4444455  44455554432  11112222 25678999


Q ss_pred             CCEEEEEec-CCe--EEEEECCCCceEEEEeccccceeeeeeEecCCCceEEe
Q 023772          196 GNCILASCL-DST--LRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTG  245 (277)
Q Consensus       196 ~~~l~~~~~-d~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  245 (277)
                      |++|+..+. +|.  |.+.|+.++.-++.+....   ......+.++++.++.
T Consensus       337 G~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~---~~e~ps~~~ng~~i~~  386 (425)
T COG0823         337 GDKIVFESSSGGQWDIDKNDLASGGKIRILTSTY---LNESPSWAPNGRMIMF  386 (425)
T ss_pred             CCEEEEEeccCCceeeEEeccCCCCcEEEccccc---cCCCCCcCCCCceEEE
Confidence            999877664 343  6667776655444444321   1122345666666553

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.61  E-value=0.0089  Score=33.70  Aligned_cols=30  Identities=7%  Similarity=0.016  Sum_probs=27.8

Q ss_pred             CCcEEEEEEeCCCCEEEEEeCCCcEEEEcC
Q 023772           18 EGAVLAARFNGDGNYCLSCGKDRTIRLWNP   47 (277)
Q Consensus        18 ~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~   47 (277)
                      ...|.++.|+|..++||.+..||.|.+|.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            356999999999999999999999999987

>PHA02790 Kelch-like protein; Provisional

Probab=96.48  E-value=0.46  Score=41.72  Aligned_cols=184  Identities=8%  Similarity=-0.035  Sum_probs=84.3

Q ss_pred             CCCEEEEEeCCC-----cEEEEECCCCce--eEEeecccCceeEEEEecCCCEEEEEeCC--CcEEEEeCccCCCcceEe
Q 023772           71 DNSKLISCGGDR-----QIFYWDVSTGRV--IRKFRGHESEVNAVKFNEYSSVVVSAGYD--QSLRAWDCRSHSTEPIQI  141 (277)
Q Consensus        71 ~~~~l~t~s~d~-----~v~~wd~~~~~~--~~~~~~h~~~v~~i~~~~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~  141 (277)
                      ++..++.||.++     ++..||..+++-  +..+........ + ..-++.+.+.||.+  .++..||.....-.....
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~-~-v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~  348 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYAS-G-VPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS  348 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcce-E-EEECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence            455567777543     466788776532  222221111111 1 22356677777754  357788865432111111


Q ss_pred             eccccCcEEEEEecCCeEEEeecCC---cEEEEEccCCccccc--CCCCCe-eEEEEeCCCCEEEEEecCCeEEEEECCC
Q 023772          142 IDSFQDSVMSVCLTKTEIIGGSVDG---TVRTFDIRVGRELSD--DLGQPV-NCISMSNDGNCILASCLDSTLRLLDRST  215 (277)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~g~~d~---~i~i~d~~~~~~~~~--~~~~~v-~~~~~s~~~~~l~~~~~d~~i~~wd~~~  215 (277)
                      +.........+...+.-.+.||.++   .+..||.++.+ +..  ....+. ...+..-+|..++.|+   ....||.++
T Consensus       349 l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~-W~~~~~m~~~r~~~~~~~~~~~IYv~GG---~~e~ydp~~  424 (480)
T PHA02790        349 LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQ-WQFGPSTYYPHYKSCALVFGRRLFLVGR---NAEFYCESS  424 (480)
T ss_pred             CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCE-EEeCCCCCCccccceEEEECCEEEEECC---ceEEecCCC
Confidence            1111111223334455456666543   46678876542 111  111111 1111223566666663   567899887


Q ss_pred             CceEEEEeccccceeeeeeEecCCCceEEeecCC-----CeEEEEECcCccc
Q 023772          216 GELLQEYKGHICKSFKTDCCLTNSDAHVTGGSED-----GYIYFWDLVDASV  262 (277)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d-----~~i~iwd~~~~~~  262 (277)
                      ++-.. ............++ .-+++..+.|+.+     ..+..||..+.+.
T Consensus       425 ~~W~~-~~~m~~~r~~~~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W  474 (480)
T PHA02790        425 NTWTL-IDDPIYPRDNPELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYSW  474 (480)
T ss_pred             CcEeE-cCCCCCCccccEEE-EECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence            65432 22111111111122 2345555555533     4577888877653

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.28  E-value=0.56  Score=39.32  Aligned_cols=93  Identities=15%  Similarity=0.119  Sum_probs=46.5

Q ss_pred             EEeCCCCEEE-EEeCCCcEEEE--cCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecc
Q 023772           25 RFNGDGNYCL-SCGKDRTIRLW--NPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGH  101 (277)
Q Consensus        25 ~~~~~~~~l~-s~s~d~~v~iw--d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h  101 (277)
                      +|.++|+.|+ ++..|+.-.+|  |+.+++..+--.+.........++++++.++-......++-.|+++.+...-+...
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p  121 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP  121 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence            3567886666 45556666555  77887654433332233335667788888766666678999999988765444444


Q ss_pred             cCceeEEEE--ecCCCEE
Q 023772          102 ESEVNAVKF--NEYSSVV  117 (277)
Q Consensus       102 ~~~v~~i~~--~~~~~~l  117 (277)
                      ...+-...+  +.++..+
T Consensus       122 ~~~~g~gt~v~n~d~t~~  139 (386)
T PF14583_consen  122 DDWKGYGTWVANSDCTKL  139 (386)
T ss_dssp             TTEEEEEEEEE-TTSSEE
T ss_pred             cccccccceeeCCCccEE
Confidence            444433444  3344444

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.04  E-value=0.42  Score=42.98  Aligned_cols=106  Identities=8%  Similarity=0.137  Sum_probs=62.6

Q ss_pred             EEEEEEeCCCCEEEEEeCC-CcEEEEc-----------CCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEE--
Q 023772           21 VLAARFNGDGNYCLSCGKD-RTIRLWN-----------PHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFY--   86 (277)
Q Consensus        21 V~~~~~~~~~~~l~s~s~d-~~v~iwd-----------~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~--   86 (277)
                      ...-.|+|+|+.+++.+.. ..+++.+           +..+....   ...+.|.++.|+|+|.+|+-.. +++|.+  
T Consensus       399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~  474 (591)
T PRK13616        399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAV  474 (591)
T ss_pred             CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEE
Confidence            5677899999988887543 2333333           22222111   2246799999999999887655 577776  


Q ss_pred             -EECCCCce-e---EEeec-ccCceeEEEEecCCCEEEEEeCCCcEEEEeC
Q 023772           87 -WDVSTGRV-I---RKFRG-HESEVNAVKFNEYSSVVVSAGYDQSLRAWDC  131 (277)
Q Consensus        87 -wd~~~~~~-~---~~~~~-h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~  131 (277)
                       -....|+. +   +.+.. -...+.++.|..++.++ .+..++...+|.+
T Consensus       475 Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v  524 (591)
T PRK13616        475 VEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV  524 (591)
T ss_pred             EEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence             44344541 1   11222 22335778999888865 4444444445544

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.93  E-value=1.2  Score=40.12  Aligned_cols=105  Identities=11%  Similarity=0.077  Sum_probs=63.4

Q ss_pred             CcEEEEEEeCCCCEEEEEe------CCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCC-----------
Q 023772           19 GAVLAARFNGDGNYCLSCG------KDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGD-----------   81 (277)
Q Consensus        19 ~~V~~~~~~~~~~~l~s~s------~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d-----------   81 (277)
                      ..+...+++++|+.++..-      .|..-.+|-...+.....+-. ....+.-.|+|+++.|.+.+..           
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~  428 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPA  428 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec-CCCCCCceECCCCCceEEEecCcceEEEeccCC
Confidence            3567888999999887554      354445553222221122221 1237778899998877766432           


Q ss_pred             -CcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEE
Q 023772           82 -RQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRA  128 (277)
Q Consensus        82 -~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~i  128 (277)
                       +.+.+.+++.++...   .....|..+.|+|||..++... ++.|.+
T Consensus       429 ~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~V  472 (591)
T PRK13616        429 TGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYL  472 (591)
T ss_pred             CceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence             233333554444332   2356799999999999887755 466655

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.89  E-value=0.76  Score=37.50  Aligned_cols=108  Identities=13%  Similarity=0.246  Sum_probs=59.3

Q ss_pred             CCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEE-CCCCcee-
Q 023772           18 EGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWD-VSTGRVI-   95 (277)
Q Consensus        18 ~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd-~~~~~~~-   95 (277)
                      .+.+..+.-+++|++++.++...-++-||.-...-...-+.-+..|.++.|.|++...+.+ ..+.++.=+ ....+.- 
T Consensus       144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~  222 (302)
T PF14870_consen  144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWS  222 (302)
T ss_dssp             ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE-
T ss_pred             cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccc
Confidence            4667888889999999888776677789854332222333346789999999998776654 788888776 2221111 


Q ss_pred             ---EEeecccCceeEEEEecCCCEEEEEeCCCcEE
Q 023772           96 ---RKFRGHESEVNAVKFNEYSSVVVSAGYDQSLR  127 (277)
Q Consensus        96 ---~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~  127 (277)
                         .......-.+..+++.++.+..+.|+. |.+.
T Consensus       223 ~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~  256 (302)
T PF14870_consen  223 EPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTLL  256 (302)
T ss_dssp             --B-TTSS--S-EEEEEESSSS-EEEEEST-T-EE
T ss_pred             cccCCcccCceeeEEEEecCCCCEEEEeCC-ccEE
Confidence               111112234678899988877776554 4443

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=95.79  E-value=0.78  Score=36.83  Aligned_cols=197  Identities=11%  Similarity=0.089  Sum_probs=109.6

Q ss_pred             CcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEE--------------EeccCccEEEEE--EcCCCCEEEEEeCCC
Q 023772           19 GAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKT--------------YKSHGREVRDVH--VTADNSKLISCGGDR   82 (277)
Q Consensus        19 ~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~--------------~~~h~~~v~~~~--~~~~~~~l~t~s~d~   82 (277)
                      .+|..+...++-+.++.-+ |+.+.++++..-.....              -......+...+  -...+...+.....+
T Consensus        36 ~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk  114 (275)
T PF00780_consen   36 SSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK  114 (275)
T ss_pred             ceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECC
Confidence            3488899999887777654 59999999764322220              111223444444  223444555566667


Q ss_pred             cEEEEECCCC-----ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeecc----------ccC
Q 023772           83 QIFYWDVSTG-----RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDS----------FQD  147 (277)
Q Consensus        83 ~v~~wd~~~~-----~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----------~~~  147 (277)
                      +|.+|.....     +..+.+. -...+.++.|.  ++.++.|..++ ..+.|+.+.....+.....          ...
T Consensus       115 ~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~  190 (275)
T PF00780_consen  115 KILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSK  190 (275)
T ss_pred             EEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCC
Confidence            8988887653     3444444 34677788888  45666665544 7778887554433321111          112


Q ss_pred             cEEEEEecCCeEEEeecCCcEEEEEccCCcccc---cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEec
Q 023772          148 SVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELS---DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKG  224 (277)
Q Consensus       148 ~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~  224 (277)
                      +...+....++++.+. |..-.+.|. .|+...   ......+..+++.  ..||++-+. +.|.+|++.++++++.+..
T Consensus       191 ~~~~~~~~~~e~Ll~~-~~~g~fv~~-~G~~~r~~~i~W~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~  265 (275)
T PF00780_consen  191 PLGIFQLSDNEFLLCY-DNIGVFVNK-NGEPSRKSTIQWSSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPL  265 (275)
T ss_pred             ceEEEEeCCceEEEEe-cceEEEEcC-CCCcCcccEEEcCCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEEC
Confidence            2333344434443332 322223333 222111   1123345556654  346666554 5699999999999998875


Q ss_pred             c
Q 023772          225 H  225 (277)
Q Consensus       225 ~  225 (277)
                      .
T Consensus       266 ~  266 (275)
T PF00780_consen  266 P  266 (275)
T ss_pred             C
Confidence            4

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.69  E-value=0.5  Score=40.86  Aligned_cols=142  Identities=15%  Similarity=0.197  Sum_probs=89.0

Q ss_pred             CCCEEE-EEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCE-------EEEEeCCCcEEEEECCCC-c-eeEEe
Q 023772           29 DGNYCL-SCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSK-------LISCGGDRQIFYWDVSTG-R-VIRKF   98 (277)
Q Consensus        29 ~~~~l~-s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~-------l~t~s~d~~v~~wd~~~~-~-~~~~~   98 (277)
                      +.++|+ ++.+-..+.--|++.|+.+...+-|.. |+-+.+.|+.+.       =+.|-.|..|.=||+.-. . .+.--
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~  422 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV  422 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence            344444 566666777778999999999887765 777888776532       233567888999998632 2 12111


Q ss_pred             ecc----cCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCe-EEEeecCCcEEEEEc
Q 023772           99 RGH----ESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE-IIGGSVDGTVRTFDI  173 (277)
Q Consensus        99 ~~h----~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~d~~i~i~d~  173 (277)
                      +.|    .....|.+-..+| +++.||.+|.|++||- ... .....+.+...+|..+..+.+. .+.|+.+.++.+-+.
T Consensus       423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~-~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t  499 (644)
T KOG2395|consen  423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGR-RAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDT  499 (644)
T ss_pred             eccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhh-hhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEE
Confidence            222    2233444444444 7888999999999995 222 1223345566777777665443 555667777777665


Q ss_pred             c
Q 023772          174 R  174 (277)
Q Consensus       174 ~  174 (277)
                      .
T Consensus       500 ~  500 (644)
T KOG2395|consen  500 L  500 (644)
T ss_pred             e
Confidence            3

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.52  E-value=0.5  Score=40.81  Aligned_cols=138  Identities=22%  Similarity=0.359  Sum_probs=88.8

Q ss_pred             CCCEEE-EEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCC-------CEEEEEeCCCcEEEEeCccCCCcceEee
Q 023772           71 DNSKLI-SCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYS-------SVVVSAGYDQSLRAWDCRSHSTEPIQII  142 (277)
Q Consensus        71 ~~~~l~-t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~-------~~l~s~~~d~~i~iwd~~~~~~~~~~~~  142 (277)
                      +...|+ .|+....+.-.|++.|+++..+.-|..-  -+.|.|..       ..-+.|-.|..|.--|++... ..+...
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~g-NKi~v~  554 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARG-NKIKVV  554 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccC-Cceeee
Confidence            444444 5666678888899999999999887765  36787753       223446667777777877543 122111


Q ss_pred             ccccCcEEEE------EecCCeEEEeecCCcEEEEEccCC--cccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEEC
Q 023772          143 DSFQDSVMSV------CLTKTEIIGGSVDGTVRTFDIRVG--RELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDR  213 (277)
Q Consensus       143 ~~~~~~~~~~------~~~~~~~~~g~~d~~i~i~d~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~  213 (277)
                      . ..+.+...      .....+++.++..|.|++||--..  +......++.|..+..+.+|.++++.+.. .|-+-|+
T Consensus       555 e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~  631 (776)
T COG5167         555 E-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDV  631 (776)
T ss_pred             e-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEec
Confidence            1 11111111      122346899999999999994221  12223457889999999999999888754 6777775

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.52  E-value=1.3  Score=37.28  Aligned_cols=237  Identities=15%  Similarity=0.118  Sum_probs=111.5

Q ss_pred             ccccccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEE-EEecc----------------CccEEEEEE
Q 023772            6 LPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIK-TYKSH----------------GREVRDVHV   68 (277)
Q Consensus         6 ~~~~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~-~~~~h----------------~~~v~~~~~   68 (277)
                      +.......+......+....|+|+|+.++-.. ++.|.+++..++...+ +..+-                -+.-..+.|
T Consensus        30 ~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~W  108 (353)
T PF00930_consen   30 IETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWW  108 (353)
T ss_dssp             TTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE
T ss_pred             cCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEE
Confidence            33333333333356788899999999988765 5899999987764432 12110                122357889


Q ss_pred             cCCCCEEEEEeCC-CcEE-----------------------------------EEECCCCceeE-Ee----ecccCceeE
Q 023772           69 TADNSKLISCGGD-RQIF-----------------------------------YWDVSTGRVIR-KF----RGHESEVNA  107 (277)
Q Consensus        69 ~~~~~~l~t~s~d-~~v~-----------------------------------~wd~~~~~~~~-~~----~~h~~~v~~  107 (277)
                      +|++++|+....| ..|+                                   ++|+++++... ..    ..-...+..
T Consensus       109 Spd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~  188 (353)
T PF00930_consen  109 SPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTR  188 (353)
T ss_dssp             -TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEE
T ss_pred             CCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCccc
Confidence            9999998876533 2233                                   23333332210 00    011234556


Q ss_pred             EEEecCCCEEEEE--eCC---CcEEEEeCccCCCcceEee--ccc---cCcEEEEEecCCe-EEEeecCCcEEE--EEcc
Q 023772          108 VKFNEYSSVVVSA--GYD---QSLRAWDCRSHSTEPIQII--DSF---QDSVMSVCLTKTE-IIGGSVDGTVRT--FDIR  174 (277)
Q Consensus       108 i~~~~~~~~l~s~--~~d---~~i~iwd~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~-~~~g~~d~~i~i--~d~~  174 (277)
                      +.|.++++.++..  +.+   ..+.++|..+.....+..-  ...   ......+...+.. +.....+|.-.+  ++..
T Consensus       189 v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~  268 (353)
T PF00930_consen  189 VGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLD  268 (353)
T ss_dssp             EEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETT
T ss_pred             ceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccc
Confidence            6676666622222  222   2244444433222111110  001   0111111122333 333446665444  4544


Q ss_pred             CCcccc-cCCCCCee-EEEEeCCCCEE-EEEec----CCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEe
Q 023772          175 VGRELS-DDLGQPVN-CISMSNDGNCI-LASCL----DSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTG  245 (277)
Q Consensus       175 ~~~~~~-~~~~~~v~-~~~~s~~~~~l-~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  245 (277)
                      .+.... +...-.|. .+.++++++.+ +++..    ...++..++..+...+.++......  ....+||++++++-
T Consensus       269 ~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~--~~~~~Spdg~y~v~  344 (353)
T PF00930_consen  269 GGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDH--YSASFSPDGKYYVD  344 (353)
T ss_dssp             SSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTT--EEEEE-TTSSEEEE
T ss_pred             ccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCc--eEEEECCCCCEEEE
Confidence            443221 12223564 46788887654 45544    3356666676233445555432222  35678999988764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.51  E-value=0.39  Score=37.15  Aligned_cols=101  Identities=9%  Similarity=0.129  Sum_probs=70.0

Q ss_pred             EEEEEeCCCCEEE-EEeCCCcEEEEc--CCCCee-----EEEEec----cCccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 023772           22 LAARFNGDGNYCL-SCGKDRTIRLWN--PHRGIH-----IKTYKS----HGREVRDVHVTADNSKLISCGGDRQIFYWDV   89 (277)
Q Consensus        22 ~~~~~~~~~~~l~-s~s~d~~v~iwd--~~~~~~-----~~~~~~----h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~   89 (277)
                      +.++|+.+.+.+. .-+.+.+|.-||  ..+|..     +..++.    .....-.+++..+|+..++.-.-++|...|.
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp  240 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP  240 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence            4577887665444 568888898887  555532     222221    1122345666778899999999999999999


Q ss_pred             CCCceeEEeecccCceeEEEEecC--CCEEEEEeC
Q 023772           90 STGRVIRKFRGHESEVNAVKFNEY--SSVVVSAGY  122 (277)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~i~~~~~--~~~l~s~~~  122 (277)
                      .+|+.+.++.--+..|++++|--.  ..+.+|+..
T Consensus       241 ~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~aa  275 (310)
T KOG4499|consen  241 TTGKILLEIKLPTPQITSCCFGGKNLDILYVTTAA  275 (310)
T ss_pred             CCCcEEEEEEcCCCceEEEEecCCCccEEEEEehh
Confidence            999999999888899999999643  334444443

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=95.41  E-value=1.2  Score=36.48  Aligned_cols=83  Identities=10%  Similarity=0.053  Sum_probs=48.9

Q ss_pred             CeeEEEEeCCCCEEEEEe-cCCeEEEEECCC--Cc---eE-EEEeccccceeeeeeEecCCCceEEeecCCC-eEEEEEC
Q 023772          186 PVNCISMSNDGNCILASC-LDSTLRLLDRST--GE---LL-QEYKGHICKSFKTDCCLTNSDAHVTGGSEDG-YIYFWDL  257 (277)
Q Consensus       186 ~v~~~~~s~~~~~l~~~~-~d~~i~~wd~~~--~~---~~-~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~-~i~iwd~  257 (277)
                      ..+.++||||++.|..+- ..+.|+-|++..  +.   .. ..+... .....--++.-.+|.+-+++-.+| .|..|+.
T Consensus       164 ~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~-~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~p  242 (307)
T COG3386         164 IPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDE-EPGLPDGMAVDADGNLWVAAVWGGGRVVRFNP  242 (307)
T ss_pred             ecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccC-CCCCCCceEEeCCCCEEEecccCCceEEEECC
Confidence            467899999997776654 457788887652  11   11 111111 111122233445566554444443 8999999


Q ss_pred             cCccceeeeccCc
Q 023772          258 VDASVVAKFKAHS  270 (277)
Q Consensus       258 ~~~~~~~~~~~h~  270 (277)
                      . |+++.+++-+.
T Consensus       243 d-G~l~~~i~lP~  254 (307)
T COG3386         243 D-GKLLGEIKLPV  254 (307)
T ss_pred             C-CcEEEEEECCC
Confidence            8 99988887663

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.34  E-value=0.99  Score=35.02  Aligned_cols=177  Identities=18%  Similarity=0.289  Sum_probs=93.2

Q ss_pred             CEEEEEeCCCcEEEEcC--CCCeeEEEEec-----cCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeeccc-
Q 023772           31 NYCLSCGKDRTIRLWNP--HRGIHIKTYKS-----HGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHE-  102 (277)
Q Consensus        31 ~~l~s~s~d~~v~iwd~--~~~~~~~~~~~-----h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~-  102 (277)
                      .+.+.+|.--.+--||-  +.....+++-.     .....+.-.++|+|++++-.=.|-. ..+....+++..-+.+|. 
T Consensus        72 ~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~-~~le~~~g~Ly~~~~~h~v  150 (310)
T KOG4499|consen   72 EFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMADFG-DDLEPIGGELYSWLAGHQV  150 (310)
T ss_pred             eEEEeecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCCCCceeeeeecccc-ccccccccEEEEeccCCCc
Confidence            46667777667777883  33344444221     1234567778899988543222211 111111222222222222 


Q ss_pred             -------CceeEEEEecCCCE-EEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCCcEEEEEcc
Q 023772          103 -------SEVNAVKFNEYSSV-VVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIR  174 (277)
Q Consensus       103 -------~~v~~i~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~  174 (277)
                             .--+.++|..+.+. -.+-+.+-+|.-||-...                          +|...+.=.+||++
T Consensus       151 ~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~--------------------------tG~~snr~~i~dlr  204 (310)
T KOG4499|consen  151 ELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCP--------------------------TGDLSNRKVIFDLR  204 (310)
T ss_pred             eeeehhccCCccccccccCcEEEEEccCceEEeeeecCCC--------------------------cccccCcceeEEec
Confidence                   11234445444332 233344444444442111                          11122333467777


Q ss_pred             CCcccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCC
Q 023772          175 VGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNS  239 (277)
Q Consensus       175 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (277)
                      ..+.....   ..-.++++.+|+..++.-..+++.-+|..+|+.+.++.--.  ..+++|||.-.
T Consensus       205 k~~~~e~~---~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt--~qitsccFgGk  264 (310)
T KOG4499|consen  205 KSQPFESL---EPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPT--PQITSCCFGGK  264 (310)
T ss_pred             cCCCcCCC---CCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCC--CceEEEEecCC
Confidence            65432222   12335667789988998899999999999999999887553  34577788643

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.30  E-value=0.83  Score=41.08  Aligned_cols=106  Identities=16%  Similarity=0.306  Sum_probs=72.9

Q ss_pred             EEEEeCCCCEEEEEeCCCcEEEEcCCCCeeE--EEEeccCccEEEEEEc--CCCCEEEEEeCCCcEEEEECC-----C--
Q 023772           23 AARFNGDGNYCLSCGKDRTIRLWNPHRGIHI--KTYKSHGREVRDVHVT--ADNSKLISCGGDRQIFYWDVS-----T--   91 (277)
Q Consensus        23 ~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~--~~~~~h~~~v~~~~~~--~~~~~l~t~s~d~~v~~wd~~-----~--   91 (277)
                      -+.-+.-++..+.-+....+.|||...+...  ..| ...+.|.+++|.  |+++.+++.|..+.|.++.-.     .  
T Consensus        34 li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~  112 (631)
T PF12234_consen   34 LISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKG  112 (631)
T ss_pred             eEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCC
Confidence            3444445555555566678999999877532  223 346789999986  688999999999999998531     1  


Q ss_pred             --CceeEE--eeccc-CceeEEEEecCCCEEEEEeCCCcEEEEeC
Q 023772           92 --GRVIRK--FRGHE-SEVNAVKFNEYSSVVVSAGYDQSLRAWDC  131 (277)
Q Consensus        92 --~~~~~~--~~~h~-~~v~~i~~~~~~~~l~s~~~d~~i~iwd~  131 (277)
                        ..+++.  +..|+ .+|.+..|.++|.+++.++  ..+.++|-
T Consensus       113 p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  113 PSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             cccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence              122333  33454 6889999999998877543  56888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.06  E-value=1.8  Score=36.42  Aligned_cols=250  Identities=15%  Similarity=0.139  Sum_probs=106.6

Q ss_pred             CccccccceeeccCCc-EEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEc--CCCCEEEEEe--
Q 023772            5 DLPRTEANVLKGHEGA-VLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVT--ADNSKLISCG--   79 (277)
Q Consensus         5 ~~~~~~~~~l~~H~~~-V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~t~s--   79 (277)
                      ++...+...|..+.+. ......+++.+.++-...+..|+--|+.+.+....+.....-+-...|.  .++.+++..-  
T Consensus        66 DL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~  145 (386)
T PF14583_consen   66 DLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEIS  145 (386)
T ss_dssp             ETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEE
T ss_pred             EcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEe
Confidence            3444455555544322 3345667888888766667789999999988777777666666555553  3455544321  


Q ss_pred             -C-------------------CCcEEEEECCCCceeEEeecccCceeEEEEecCCC-EEEEEe---CCC-cEEEEeCccC
Q 023772           80 -G-------------------DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSS-VVVSAG---YDQ-SLRAWDCRSH  134 (277)
Q Consensus        80 -~-------------------d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~---~d~-~i~iwd~~~~  134 (277)
                       .                   ...|.--|+.+|+....+. -+..+.-+.|+|... +|+-|-   .|. .-+||-++..
T Consensus       146 ~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d  224 (386)
T PF14583_consen  146 REDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTD  224 (386)
T ss_dssp             GGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETT
T ss_pred             ehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcC
Confidence             1                   1244555666666433332 345556677877644 444443   233 1366765532


Q ss_pred             CCcceEeeccccCc-E---EEEEecCCeEE-----EeecCCcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecC
Q 023772          135 STEPIQIIDSFQDS-V---MSVCLTKTEII-----GGSVDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLD  205 (277)
Q Consensus       135 ~~~~~~~~~~~~~~-~---~~~~~~~~~~~-----~g~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  205 (277)
                      ... ...+..+... +   -.+..++..+.     -++.+..|.-+|+.+++...............+++|++++-=+.|
T Consensus       225 g~~-~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  225 GSN-VKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMPWCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             S----EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-SEEEEEE-TTSSEEEEEE--
T ss_pred             CCc-ceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCCceeeeEEcCCCCEEEecCCC
Confidence            211 1111111111 0   01111222111     122233455556655432211111123345557888854332222


Q ss_pred             ----------------CeEEEEECCCCceEEEEeccc---------cceeeeeeEecCCCceEE-eecCCCeEEEEEC
Q 023772          206 ----------------STLRLLDRSTGELLQEYKGHI---------CKSFKTDCCLTNSDAHVT-GGSEDGYIYFWDL  257 (277)
Q Consensus       206 ----------------~~i~~wd~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~-sgs~d~~i~iwd~  257 (277)
                                      -.|+++++..+.... +..|.         ....-....|+||+++|+ ++...|...||=+
T Consensus       304 ~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~-l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v  380 (386)
T PF14583_consen  304 APVDVADAGGYKIENDPWIYLFDVEAGRFRK-LARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV  380 (386)
T ss_dssp             -----------------EEEEEETTTTEEEE-EEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred             CCccccccccceecCCcEEEEeccccCceee-eeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence                            256778887765432 11121         011234567999999865 5566777666644

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.01  E-value=1.5  Score=35.16  Aligned_cols=61  Identities=18%  Similarity=0.231  Sum_probs=46.1

Q ss_pred             EEcCCCCEEEEEeCC-----CcEEEEECCCC-ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEE
Q 023772           67 HVTADNSKLISCGGD-----RQIFYWDVSTG-RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAW  129 (277)
Q Consensus        67 ~~~~~~~~l~t~s~d-----~~v~~wd~~~~-~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iw  129 (277)
                      .|++++.+|+..-.|     |.|-+||...+ +.+..+..|.-.-..+.+.+|++.++.+.  |-|..-
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIeth  186 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETH  186 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--Cceecc
Confidence            488999999877554     67899998754 45677888877778899999999988653  445544

>PRK10115 protease 2; Provisional

Probab=94.89  E-value=3.1  Score=38.39  Aligned_cols=236  Identities=11%  Similarity=0.029  Sum_probs=112.5

Q ss_pred             cEEEEEEeCCCCEEEEE-----eCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCC------CcEEEEE
Q 023772           20 AVLAARFNGDGNYCLSC-----GKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGD------RQIFYWD   88 (277)
Q Consensus        20 ~V~~~~~~~~~~~l~s~-----s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d------~~v~~wd   88 (277)
                      .+....++|||++|+-+     ++...|++-|+.+|..+...-...  -..+.|.++++.|+-...+      ..|..++
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            36678899999988743     333567888888876332221111  1568999998866554432      3688888


Q ss_pred             CCCC--ceeEEeecccCcee-EEEEecCCCEEEEEe---CCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEe
Q 023772           89 VSTG--RVIRKFRGHESEVN-AVKFNEYSSVVVSAG---YDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGG  162 (277)
Q Consensus        89 ~~~~--~~~~~~~~h~~~v~-~i~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  162 (277)
                      +.++  +-..-+........ ....+.+++.++..+   .++.+.+++.....................+......+..-
T Consensus       206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~  285 (686)
T PRK10115        206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHYQHRFYLR  285 (686)
T ss_pred             CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeCCCEEEEE
Confidence            8877  33223333222333 233344666544433   24568888853322222222222222222332222333222


Q ss_pred             ec----CCcEEEEEccC-C--cccccC-CCCCeeEEEEeCCCCEEEEEecCCeEEE--EECCCCceEEEEe-ccccceee
Q 023772          163 SV----DGTVRTFDIRV-G--RELSDD-LGQPVNCISMSNDGNCILASCLDSTLRL--LDRSTGELLQEYK-GHICKSFK  231 (277)
Q Consensus       163 ~~----d~~i~i~d~~~-~--~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~~--wd~~~~~~~~~~~-~~~~~~~~  231 (277)
                      +.    ...|...++.. +  +.+... ....+..+.+. .+..+++...++.-++  +|...+ .+..+. ...  ...
T Consensus       286 tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~~~--~~~  361 (686)
T PRK10115        286 SNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIGIAFDDP--AYV  361 (686)
T ss_pred             EcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEEecCCCC--ceE
Confidence            22    11233334431 1  122222 22357777776 3344555566665554  454433 333332 111  111


Q ss_pred             eeeEec--CCC-ceEEee---cCCCeEEEEECcCcc
Q 023772          232 TDCCLT--NSD-AHVTGG---SEDGYIYFWDLVDAS  261 (277)
Q Consensus       232 ~~~~~~--~~~-~~l~sg---s~d~~i~iwd~~~~~  261 (277)
                      .....+  +++ .++++-   ..-+.++.||..+++
T Consensus       362 ~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        362 TWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             eeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence            111122  232 333322   346678888887764

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.82  E-value=2.9  Score=37.72  Aligned_cols=71  Identities=6%  Similarity=0.181  Sum_probs=48.9

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEee-cccCceeEEEEe--cCCCEEEEEeCCCcEEEEeC
Q 023772           61 REVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFR-GHESEVNAVKFN--EYSSVVVSAGYDQSLRAWDC  131 (277)
Q Consensus        61 ~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~-~h~~~v~~i~~~--~~~~~l~s~~~d~~i~iwd~  131 (277)
                      ....-+.-+.-++.-+.-+...++.+||...+....+-. .....|.+++|.  |+++.+++.|..+.|.++-.
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q  103 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ  103 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence            344445555544433344445679999998887543322 347789999985  78899999999999999964

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=94.66  E-value=1.9  Score=34.87  Aligned_cols=208  Identities=15%  Similarity=0.165  Sum_probs=116.2

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEECCC------C-ceeEEeec-----ccCceeEEEEecCC------------CEE
Q 023772           62 EVRDVHVTADNSKLISCGGDRQIFYWDVST------G-RVIRKFRG-----HESEVNAVKFNEYS------------SVV  117 (277)
Q Consensus        62 ~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~------~-~~~~~~~~-----h~~~v~~i~~~~~~------------~~l  117 (277)
                      .-+.++++|.+..-++....+...+||...      . .++-++..     .....+.+.|+...            ..+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            357889999998888888888999999861      1 22223321     12345666666332            246


Q ss_pred             EEEeCCCcEEEEeCccCCC---cceEeeccc-cCcEE-EEEec----CCeEE-EeecCCcEEEEEccCCcccc-----cC
Q 023772          118 VSAGYDQSLRAWDCRSHST---EPIQIIDSF-QDSVM-SVCLT----KTEII-GGSVDGTVRTFDIRVGRELS-----DD  182 (277)
Q Consensus       118 ~s~~~d~~i~iwd~~~~~~---~~~~~~~~~-~~~~~-~~~~~----~~~~~-~g~~d~~i~i~d~~~~~~~~-----~~  182 (277)
                      +.+++||+|.-|.......   .....+... ...++ -+.+.    .+.|. +--..++|.+||-.-.+...     ..
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP  183 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP  183 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence            8889999999998643222   122223222 12221 12221    23333 33446788888754222110     00


Q ss_pred             ---CC-CCeeEE--------EE---eCCCCEEEEEecCCeEEEEECCCCceEEEEecc--ccceeeeeeEe----cCCCc
Q 023772          183 ---LG-QPVNCI--------SM---SNDGNCILASCLDSTLRLLDRSTGELLQEYKGH--ICKSFKTDCCL----TNSDA  241 (277)
Q Consensus       183 ---~~-~~v~~~--------~~---s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~  241 (277)
                         .+ .+.+-.        .+   .++...=+.|..-|.|-+||.. +++++.+...  .+..+.+..+.    ...+.
T Consensus       184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~  262 (336)
T TIGR03118       184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGA  262 (336)
T ss_pred             CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence               00 111111        11   2222222334455788999985 7888877532  22222222211    23467


Q ss_pred             eEEeecCCCeEEEEECcCccceeeeccCc
Q 023772          242 HVTGGSEDGYIYFWDLVDASVVAKFKAHS  270 (277)
Q Consensus       242 ~l~sgs~d~~i~iwd~~~~~~~~~~~~h~  270 (277)
                      +|+.-.-||+|..+|..+++.+..++..+
T Consensus       263 lLVGNFGDG~InaFD~~sG~~~g~L~~~~  291 (336)
T TIGR03118       263 LLVGNFGDGTINAYDPQSGAQLGQLLDPD  291 (336)
T ss_pred             eEEeecCCceeEEecCCCCceeeeecCCC
Confidence            78887889999999999999999888643

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=94.65  E-value=2.6  Score=36.34  Aligned_cols=30  Identities=7%  Similarity=0.172  Sum_probs=24.8

Q ss_pred             CeeEEEEeCCCCEEEEEecCCeEEEEECCC
Q 023772          186 PVNCISMSNDGNCILASCLDSTLRLLDRST  215 (277)
Q Consensus       186 ~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~  215 (277)
                      .+..+...+..+.+.+...++.|++|++..
T Consensus       191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            488889998889999999999999999974

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.58  E-value=0.74  Score=35.73  Aligned_cols=72  Identities=10%  Similarity=0.167  Sum_probs=53.2

Q ss_pred             cEEEEEecCCeEEEeecCCcEEEEEccCCcccccC----------------CCCCeeEEEEeCCCCEEEEEecCCeEEEE
Q 023772          148 SVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDD----------------LGQPVNCISMSNDGNCILASCLDSTLRLL  211 (277)
Q Consensus       148 ~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~----------------~~~~v~~~~~s~~~~~l~~~~~d~~i~~w  211 (277)
                      ++..+...++.+++-+.+|.+++||+.+++.+...                ....|..+.++.+|.-+++- .+|..+.|
T Consensus        14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y   92 (219)
T PF07569_consen   14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSY   92 (219)
T ss_pred             ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEe
Confidence            45566777888999999999999999887643221                23467888889888866654 46788999


Q ss_pred             ECCCCceEE
Q 023772          212 DRSTGELLQ  220 (277)
Q Consensus       212 d~~~~~~~~  220 (277)
                      |..-+.-+.
T Consensus        93 ~~~L~~W~~  101 (219)
T PF07569_consen   93 SPDLGCWIR  101 (219)
T ss_pred             ccccceeEE
Confidence            987765554

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.53  E-value=0.2  Score=27.46  Aligned_cols=30  Identities=13%  Similarity=0.285  Sum_probs=24.9

Q ss_pred             CeeEEEEeCCCC---EEEEEecCCeEEEEECCC
Q 023772          186 PVNCISMSNDGN---CILASCLDSTLRLLDRST  215 (277)
Q Consensus       186 ~v~~~~~s~~~~---~l~~~~~d~~i~~wd~~~  215 (277)
                      .++++.|+|+..   +|+-+-.-+.+.++|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            588999998544   777777888999999985

It contains a characteristic DLL sequence motif.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.95  E-value=0.89  Score=43.07  Aligned_cols=151  Identities=10%  Similarity=0.062  Sum_probs=88.8

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCC----------------ceeEEeecc-cCceeEEEEecCCCE--EEEEeCCC
Q 023772           64 RDVHVTADNSKLISCGGDRQIFYWDVSTG----------------RVIRKFRGH-ESEVNAVKFNEYSSV--VVSAGYDQ  124 (277)
Q Consensus        64 ~~~~~~~~~~~l~t~s~d~~v~~wd~~~~----------------~~~~~~~~h-~~~v~~i~~~~~~~~--l~s~~~d~  124 (277)
                      ..++.++....++.++..+.+.++-..+-                ..+.+++.| ..++..+...+|...  ++..+.+-
T Consensus        45 n~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~  124 (1405)
T KOG3630|consen   45 NNLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGE  124 (1405)
T ss_pred             hhhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCc
Confidence            45666666667777777777777654321                011233333 345555666677543  44445556


Q ss_pred             cEEEEeCccCCCcceEe---ecc----c--cCcEEEEEecC---CeEEEeecCCcEEEEEccCCcccc--cCCCCCeeEE
Q 023772          125 SLRAWDCRSHSTEPIQI---IDS----F--QDSVMSVCLTK---TEIIGGSVDGTVRTFDIRVGRELS--DDLGQPVNCI  190 (277)
Q Consensus       125 ~i~iwd~~~~~~~~~~~---~~~----~--~~~~~~~~~~~---~~~~~g~~d~~i~i~d~~~~~~~~--~~~~~~v~~~  190 (277)
                      .|..||++.........   +..    .  ......+.+++   ...+....|+.|++..+.......  .......+++
T Consensus       125 ~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav  204 (1405)
T KOG3630|consen  125 AVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAV  204 (1405)
T ss_pred             eEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeE
Confidence            78999987643222111   110    0  11112233333   235667788888887665332211  1344578999


Q ss_pred             EEeCCCCEEEEEecCCeEEEEECC
Q 023772          191 SMSNDGNCILASCLDSTLRLLDRS  214 (277)
Q Consensus       191 ~~s~~~~~l~~~~~d~~i~~wd~~  214 (277)
                      +|+|.|+.++.|-..|++.-|-..
T Consensus       205 ~WSprGKQl~iG~nnGt~vQy~P~  228 (1405)
T KOG3630|consen  205 LWSPRGKQLFIGRNNGTEVQYEPS  228 (1405)
T ss_pred             EeccccceeeEecCCCeEEEeecc
Confidence            999999999999999999888764

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.91  E-value=0.59  Score=36.27  Aligned_cols=72  Identities=15%  Similarity=0.191  Sum_probs=48.3

Q ss_pred             EeCCCCEEEEEecCCeEEEEECCCCceEEEEe------cc------ccceeeeeeEecCCCceEEeecCCCeEEEEECcC
Q 023772          192 MSNDGNCILASCLDSTLRLLDRSTGELLQEYK------GH------ICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVD  259 (277)
Q Consensus       192 ~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~------~~------~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~  259 (277)
                      +...+.++++-..+|.+++||+.+++.+..-.      ..      .....+..+.++.+|.-+++ -.+|..+.|+.+-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~-lsng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVT-LSNGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEE-EeCCCEEEecccc
Confidence            44578899999999999999999887643220      00      11233455667777776665 4468899998776


Q ss_pred             cccee
Q 023772          260 ASVVA  264 (277)
Q Consensus       260 ~~~~~  264 (277)
                      +.-+.
T Consensus        97 ~~W~~  101 (219)
T PF07569_consen   97 GCWIR  101 (219)
T ss_pred             ceeEE
Confidence            54443

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=93.71  E-value=1.1  Score=38.37  Aligned_cols=86  Identities=14%  Similarity=0.199  Sum_probs=60.0

Q ss_pred             eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCcc-EEEEEEcCCC----------------C--E
Q 023772           14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGRE-VRDVHVTADN----------------S--K   74 (277)
Q Consensus        14 l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~-v~~~~~~~~~----------------~--~   74 (277)
                      |.-....+.++..+|++++.+....-|.|.++|+.++..++.+++-... +.-+.....+                .  +
T Consensus       303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L  382 (415)
T PF14655_consen  303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL  382 (415)
T ss_pred             eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence            4455667899999999999999888899999999998877777653322 2211111111                1  1


Q ss_pred             EEEEeCCCcEEEEECCCCceeEEee
Q 023772           75 LISCGGDRQIFYWDVSTGRVIRKFR   99 (277)
Q Consensus        75 l~t~s~d~~v~~wd~~~~~~~~~~~   99 (277)
                      ++-+-.-|.|-+|++.+|..+..+.
T Consensus       383 vIyaprRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  383 VIYAPRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             EEEeccCCeEEEEecCCCCEEEEEE
Confidence            2345667899999999888877665

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.58  E-value=3.2  Score=33.41  Aligned_cols=200  Identities=14%  Similarity=0.128  Sum_probs=112.6

Q ss_pred             EEEEEEeCCCCEEEEEeCCCcEEEEcCCCCee--EEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe
Q 023772           21 VLAARFNGDGNYCLSCGKDRTIRLWNPHRGIH--IKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKF   98 (277)
Q Consensus        21 V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~   98 (277)
                      ..+.-|.....+-..++.+  ..+|...-...  .+.+.+-...+.++.|+|+.+.|++......--+|=..+|++++++
T Consensus        46 f~~a~~k~~~~~~~~~~r~--~~~~l~~y~~~i~akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirti  123 (316)
T COG3204          46 FPCAWFKAGQTNGLDLSRY--IARYLLEYRARIDAKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTI  123 (316)
T ss_pred             eeeEEEeccccccccccch--hhhccCCceEEEeccccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEe
Confidence            4444444444444455555  45555332111  1112333456999999999999999888887777766778888876


Q ss_pred             ecc-cCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcc-----eEeeccc---cCcEEEEEecC--CeEEEeecCCc
Q 023772           99 RGH-ESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEP-----IQIIDSF---QDSVMSVCLTK--TEIIGGSVDGT  167 (277)
Q Consensus        99 ~~h-~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-----~~~~~~~---~~~~~~~~~~~--~~~~~g~~d~~  167 (277)
                      .-- -..-..|.+...++++++-=.++.+.++.+.......     ...+...   ....-.+++++  ..++.+=.-+-
T Consensus       124 PL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P  203 (316)
T COG3204         124 PLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNP  203 (316)
T ss_pred             cccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCC
Confidence            421 1223457788888888887778888887665432110     0001111   11122233332  33555555556


Q ss_pred             EEEEEccCCc-cccc----CC-------CCCeeEEEEeC-CCCEEEEEecCCeEEEEECCCCceEEEEe
Q 023772          168 VRTFDIRVGR-ELSD----DL-------GQPVNCISMSN-DGNCILASCLDSTLRLLDRSTGELLQEYK  223 (277)
Q Consensus       168 i~i~d~~~~~-~~~~----~~-------~~~v~~~~~s~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~  223 (277)
                      +.||...... .+..    ..       -..+..+.|++ .+..|+.+.+++.+.-.|.. |..+..+.
T Consensus       204 ~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~ls  271 (316)
T COG3204         204 IGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLS  271 (316)
T ss_pred             cEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEE
Confidence            6666654332 1111    00       12466778886 45667777788888778875 55555544

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.48  E-value=0.53  Score=25.80  Aligned_cols=31  Identities=13%  Similarity=0.129  Sum_probs=25.3

Q ss_pred             ccEEEEEEcCCCC---EEEEEeCCCcEEEEECCC
Q 023772           61 REVRDVHVTADNS---KLISCGGDRQIFYWDVST   91 (277)
Q Consensus        61 ~~v~~~~~~~~~~---~l~t~s~d~~v~~wd~~~   91 (277)
                      ++|++++|+|++.   +|+-+-..+.|.++|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4789999998554   777777789999999985

It contains a characteristic DLL sequence motif.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.33  E-value=3.6  Score=33.17  Aligned_cols=118  Identities=11%  Similarity=0.146  Sum_probs=89.4

Q ss_pred             eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEecc-CccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 023772           15 KGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSH-GREVRDVHVTADNSKLISCGGDRQIFYWDVSTGR   93 (277)
Q Consensus        15 ~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~   93 (277)
                      .|-...|.++.|+|+.+.|++........||=...|..++++.-. -+....+++..+|++.++--.++.+.++.++.+.
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t  161 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT  161 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence            454555999999999999999988899999988888888876431 2355678888888888887788899988887553


Q ss_pred             eeEE----------eecccCceeEEEEecCCCEEEEEeCCCcEEEEeCc
Q 023772           94 VIRK----------FRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR  132 (277)
Q Consensus        94 ~~~~----------~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~  132 (277)
                      ....          ....+.....++|.+..+.++.+=.-.-+.||...
T Consensus       162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~  210 (316)
T COG3204         162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT  210 (316)
T ss_pred             cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence            2211          11225677889999999888888777778888754

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=92.85  E-value=0.18  Score=46.27  Aligned_cols=199  Identities=14%  Similarity=0.130  Sum_probs=106.5

Q ss_pred             ceeeccCCcEEEEEEeCC-CCEEEEEeCCCcEEEEcCC--CCeeEEEE-----eccCccEEEEEE---cCCCCEEEEEeC
Q 023772           12 NVLKGHEGAVLAARFNGD-GNYCLSCGKDRTIRLWNPH--RGIHIKTY-----KSHGREVRDVHV---TADNSKLISCGG   80 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~~-~~~l~s~s~d~~v~iwd~~--~~~~~~~~-----~~h~~~v~~~~~---~~~~~~l~t~s~   80 (277)
                      ..++|-.|.|..++|... -..+.  -.-|.+.|||+.  .|+....+     ..-..++.-+.|   .++.-++..+-.
T Consensus       126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~  203 (1283)
T KOG1916|consen  126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK  203 (1283)
T ss_pred             HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC
Confidence            446788889999998642 22222  333788999854  33322222     222233333444   445566666777


Q ss_pred             CCcEEEEECCCCceeEEeecccCceeEEE-----------EecCCCEEEEEeCCCcEEEEeCccCCC--cceE-eecc--
Q 023772           81 DRQIFYWDVSTGRVIRKFRGHESEVNAVK-----------FNEYSSVVVSAGYDQSLRAWDCRSHST--EPIQ-IIDS--  144 (277)
Q Consensus        81 d~~v~~wd~~~~~~~~~~~~h~~~v~~i~-----------~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~-~~~~--  144 (277)
                      ++.+++....+... .-+++|...+..++           .+|||+.++++..||.++.|.+.-...  .+.. ....  
T Consensus       204 ~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd  282 (1283)
T KOG1916|consen  204 GGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHD  282 (1283)
T ss_pred             CCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCC
Confidence            88888776654332 22445766665555           468899999999999999887642211  0110 1111  


Q ss_pred             -ccCcEEEEEecC---------Ce-EEEe-ecCCcEEEEEccCCcccccCCCCCeeEEEEeCCCCE------------EE
Q 023772          145 -FQDSVMSVCLTK---------TE-IIGG-SVDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNC------------IL  200 (277)
Q Consensus       145 -~~~~~~~~~~~~---------~~-~~~g-~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~------------l~  200 (277)
                       ++..+.- +.+.         .. ++++ -.++.+++|....-++......+-|+.+. -++|..            ++
T Consensus       283 ~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~~d~v~iV~-p~~~~v~~~~~~~~~~~~~v  360 (1283)
T KOG1916|consen  283 KHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKLIDGVQIVG-PHDGEVTDLSMCQWMTTRLV  360 (1283)
T ss_pred             CCCceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhcccceEeec-CCCccccchhhhHHHHHHHH
Confidence             2222222 1111         11 3333 33466888887655555444444455544 223321            22


Q ss_pred             EEecCCeEEEEECCC
Q 023772          201 ASCLDSTLRLLDRST  215 (277)
Q Consensus       201 ~~~~d~~i~~wd~~~  215 (277)
                      ..+.|+.|++|.-+.
T Consensus       361 ~r~v~~~i~~~qn~~  375 (1283)
T KOG1916|consen  361 SRSVDGTIKIWQNRK  375 (1283)
T ss_pred             HhhhHHHHHHhhcch
Confidence            345678888886543

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=92.61  E-value=0.069  Score=48.79  Aligned_cols=113  Identities=17%  Similarity=0.281  Sum_probs=70.1

Q ss_pred             EEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEE-----------EcCCCCEEEEEeCCCcEEEEEC
Q 023772           21 VLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVH-----------VTADNSKLISCGGDRQIFYWDV   89 (277)
Q Consensus        21 V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~-----------~~~~~~~l~t~s~d~~v~~wd~   89 (277)
                      |.-+.|.++..++..+-.++++++-+..+... ..|..|+..+..++           ++|||+.++++..||.++.|..
T Consensus       186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             eeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence            44455566777877888889999877654322 34555766555443           6889999999999998888865


Q ss_pred             C-CC----ceeEEeeccc-CceeEEEEecCC---------CEEE-EEeCCCcEEEEeCccC
Q 023772           90 S-TG----RVIRKFRGHE-SEVNAVKFNEYS---------SVVV-SAGYDQSLRAWDCRSH  134 (277)
Q Consensus        90 ~-~~----~~~~~~~~h~-~~v~~i~~~~~~---------~~l~-s~~~d~~i~iwd~~~~  134 (277)
                      - +|    .+...++.|. .+-.|.-++.+.         .+++ +...+..+++|.....
T Consensus       265 yi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w  325 (1283)
T KOG1916|consen  265 YITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPW  325 (1283)
T ss_pred             eeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccch
Confidence            2 22    3455566665 232222243321         1334 4445677999986543

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=92.58  E-value=0.81  Score=40.94  Aligned_cols=29  Identities=21%  Similarity=0.336  Sum_probs=25.5

Q ss_pred             CCceEEeecCCCeEEEEECcCccceeeec
Q 023772          239 SDAHVTGGSEDGYIYFWDLVDASVVAKFK  267 (277)
Q Consensus       239 ~~~~l~sgs~d~~i~iwd~~~~~~~~~~~  267 (277)
                      +..++++-+.|+++|+||+.++.++....
T Consensus       229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  229 DDTFLFTLSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             TTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence            67889999999999999999999976653

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=92.36  E-value=0.92  Score=40.61  Aligned_cols=37  Identities=19%  Similarity=0.446  Sum_probs=28.8

Q ss_pred             cEEEEEEcC----CCCEEEEEeCCCcEEEEECCCCceeEEe
Q 023772           62 EVRDVHVTA----DNSKLISCGGDRQIFYWDVSTGRVIRKF   98 (277)
Q Consensus        62 ~v~~~~~~~----~~~~l~t~s~d~~v~~wd~~~~~~~~~~   98 (277)
                      ...++++..    +..++++.+.|+++|+||+++++++.+.
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            455666666    6789999999999999999999996654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.31  E-value=11  Score=36.37  Aligned_cols=29  Identities=10%  Similarity=0.137  Sum_probs=24.6

Q ss_pred             cEEEEEEeCCCCEEEEEeCCCcEEEEcCC
Q 023772           20 AVLAARFNGDGNYCLSCGKDRTIRLWNPH   48 (277)
Q Consensus        20 ~V~~~~~~~~~~~l~s~s~d~~v~iwd~~   48 (277)
                      .-..++|++.-.+++-+...|.+++|-..
T Consensus        37 ~~~~~afD~~q~llai~t~tg~i~~yg~~   65 (993)
T KOG1983|consen   37 TPSALAFDPTQGLLAIGTRTGAIKIYGQP   65 (993)
T ss_pred             CCcceeeccccceEEEEEecccEEEeccc
Confidence            34568899999999999999999999743

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=92.14  E-value=6.1  Score=32.88  Aligned_cols=103  Identities=15%  Similarity=0.223  Sum_probs=57.9

Q ss_pred             EEEEEEeCCCCEEEEEeCCCcEEEEcCCCCee---EEEE----eccCccEEEEEEcCC---CCEEEEEeCC---------
Q 023772           21 VLAARFNGDGNYCLSCGKDRTIRLWNPHRGIH---IKTY----KSHGREVRDVHVTAD---NSKLISCGGD---------   81 (277)
Q Consensus        21 V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~---~~~~----~~h~~~v~~~~~~~~---~~~l~t~s~d---------   81 (277)
                      -+.++|.|||+++++ -..|.|++++ ..+..   +...    .........++++|+   +.+|+.....         
T Consensus         4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            468999999988776 5589999999 44443   2222    123456789999984   3454443321         


Q ss_pred             CcEEEEECCCC-------c-eeEEeec---ccCceeEEEEecCCCEEEEEeCCCc
Q 023772           82 RQIFYWDVSTG-------R-VIRKFRG---HESEVNAVKFNEYSSVVVSAGYDQS  125 (277)
Q Consensus        82 ~~v~~wd~~~~-------~-~~~~~~~---h~~~v~~i~~~~~~~~l~s~~~d~~  125 (277)
                      ..|.-|....+       + ++..+..   ....-..|.|.|++.+.++.+..+.
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~  136 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN  136 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence            24444444333       1 1222222   2234466999999988777765443

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=91.93  E-value=7.5  Score=33.45  Aligned_cols=141  Identities=11%  Similarity=0.092  Sum_probs=79.2

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCc-----eeEEeecccCceeEEEEecC----CCEEEEEeCCCcEEEEeCccCCCc----
Q 023772           71 DNSKLISCGGDRQIFYWDVSTGR-----VIRKFRGHESEVNAVKFNEY----SSVVVSAGYDQSLRAWDCRSHSTE----  137 (277)
Q Consensus        71 ~~~~l~t~s~d~~v~~wd~~~~~-----~~~~~~~h~~~v~~i~~~~~----~~~l~s~~~d~~i~iwd~~~~~~~----  137 (277)
                      +...|+.||.+|.+++++...+.     ++-+. .-+.||-++...+.    ....++.-.-+.+.+|.+......    
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g  114 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHG  114 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccC
Confidence            34689999999999999986543     12111 23568888876542    333444466677888877432211    


Q ss_pred             ---ceEeeccc--cCcEEEEEec-------CCeEEEeecCCcEEEEEccCCcc-cccCCCCCeeEEEEeCCCCEEEEEec
Q 023772          138 ---PIQIIDSF--QDSVMSVCLT-------KTEIIGGSVDGTVRTFDIRVGRE-LSDDLGQPVNCISMSNDGNCILASCL  204 (277)
Q Consensus       138 ---~~~~~~~~--~~~~~~~~~~-------~~~~~~g~~d~~i~i~d~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~  204 (277)
                         .......|  +.....++..       ...+.+=+.||.+.+|+-+...- .....---.-.+++.+.-..|++++.
T Consensus       115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~ss  194 (418)
T PF14727_consen  115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASS  194 (418)
T ss_pred             cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecC
Confidence               11122222  2222222221       23466678999999998764321 00000111233567776667777777


Q ss_pred             CCeEEEEE
Q 023772          205 DSTLRLLD  212 (277)
Q Consensus       205 d~~i~~wd  212 (277)
                      +..+..|.
T Consensus       195 s~~l~~Yk  202 (418)
T PF14727_consen  195 SWTLECYK  202 (418)
T ss_pred             ceeEEEec
Confidence            77776665

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=91.84  E-value=11  Score=35.26  Aligned_cols=69  Identities=13%  Similarity=0.178  Sum_probs=46.6

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEE-------------EEEEcC--CCCEEEEEeC----------CCcE
Q 023772           30 GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVR-------------DVHVTA--DNSKLISCGG----------DRQI   84 (277)
Q Consensus        30 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~-------------~~~~~~--~~~~l~t~s~----------d~~v   84 (277)
                      +..++.++.|+.+.-.|..+|+..-.|.. .+.|.             ...-.|  .+..++.|+.          +|.|
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I  338 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI  338 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence            45778888999999999999988876642 12221             000111  1345666642          6889


Q ss_pred             EEEECCCCceeEEee
Q 023772           85 FYWDVSTGRVIRKFR   99 (277)
Q Consensus        85 ~~wd~~~~~~~~~~~   99 (277)
                      +-+|+++|+++..+.
T Consensus       339 ~A~Da~TGkl~W~~~  353 (764)
T TIGR03074       339 RAFDVNTGALVWAWD  353 (764)
T ss_pred             EEEECCCCcEeeEEe
Confidence            999999999988775

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.71  E-value=11  Score=34.97  Aligned_cols=32  Identities=22%  Similarity=0.214  Sum_probs=24.5

Q ss_pred             CCCeeEEEEeCC---CCEEEEEecCCeEEEEECCC
Q 023772          184 GQPVNCISMSND---GNCILASCLDSTLRLLDRST  215 (277)
Q Consensus       184 ~~~v~~~~~s~~---~~~l~~~~~d~~i~~wd~~~  215 (277)
                      ...|..+.|+|.   +..|+.=..|+++|+||+..
T Consensus       146 ~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  146 SLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD  180 (717)
T ss_pred             CceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence            346778888885   47777778888899998854

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=91.59  E-value=6.5  Score=32.01  Aligned_cols=202  Identities=12%  Similarity=0.137  Sum_probs=110.3

Q ss_pred             EEEEEeCCCCEEEEEeCCCcEEEEcCC-------CCeeEEEEec-----cCccEEEEEEcCCC------------CEEEE
Q 023772           22 LAARFNGDGNYCLSCGKDRTIRLWNPH-------RGIHIKTYKS-----HGREVRDVHVTADN------------SKLIS   77 (277)
Q Consensus        22 ~~~~~~~~~~~l~s~s~d~~v~iwd~~-------~~~~~~~~~~-----h~~~v~~~~~~~~~------------~~l~t   77 (277)
                      ..++|+|.+.+-++...-+...+||..       ....+-++..     .....+.+.|+...            ..++.
T Consensus        26 WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif  105 (336)
T TIGR03118        26 WGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLF  105 (336)
T ss_pred             ceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEE
Confidence            579999999988888888999999986       1122333331     12356667665332            23677


Q ss_pred             EeCCCcEEEEECCCCce-----eEEeecc-cCce-eEEEEec--CCCEEEEE-eCCCcEEEEeCccCCCcceEeeccccC
Q 023772           78 CGGDRQIFYWDVSTGRV-----IRKFRGH-ESEV-NAVKFNE--YSSVVVSA-GYDQSLRAWDCRSHSTEPIQIIDSFQD  147 (277)
Q Consensus        78 ~s~d~~v~~wd~~~~~~-----~~~~~~h-~~~v-~~i~~~~--~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~  147 (277)
                      ++.||+|.-|...-+..     ...+... ...| ..+++..  .+.+|..+ -..++|.+||-.-..   ...-....+
T Consensus       106 ~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~---~~~~g~F~D  182 (336)
T TIGR03118       106 VTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRP---PPLPGSFID  182 (336)
T ss_pred             EeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccc---ccCCCCccC
Confidence            88999999998532221     1112111 2333 3444442  23444443 457889999853211   100000000


Q ss_pred             ----------cEEE------EEe---c--CCeEEEeecCCcEEEEEccCCcccccCCC---CCeeEEEEeC------CCC
Q 023772          148 ----------SVMS------VCL---T--KTEIIGGSVDGTVRTFDIRVGRELSDDLG---QPVNCISMSN------DGN  197 (277)
Q Consensus       148 ----------~~~~------~~~---~--~~~~~~g~~d~~i~i~d~~~~~~~~~~~~---~~v~~~~~s~------~~~  197 (277)
                                .+..      +..   +  .+.=+.|..-|.|.+||+.-....+...+   .....|+..|      .|.
T Consensus       183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~  262 (336)
T TIGR03118       183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGA  262 (336)
T ss_pred             CCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence                      0100      000   1  11122344457888888753321111111   2334455544      466


Q ss_pred             EEEEEecCCeEEEEECCCCceEEEEeccc
Q 023772          198 CILASCLDSTLRLLDRSTGELLQEYKGHI  226 (277)
Q Consensus       198 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~  226 (277)
                      .|+---.||+|..||..+++.+..+....
T Consensus       263 lLVGNFGDG~InaFD~~sG~~~g~L~~~~  291 (336)
T TIGR03118       263 LLVGNFGDGTINAYDPQSGAQLGQLLDPD  291 (336)
T ss_pred             eEEeecCCceeEEecCCCCceeeeecCCC
Confidence            67777789999999999998877776543

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=91.27  E-value=14  Score=35.10  Aligned_cols=111  Identities=13%  Similarity=0.152  Sum_probs=64.6

Q ss_pred             EEecCCeEEEeecCCcEEEEEccCCc---ccccCCCCCeeEEEEeCCC------CEEEEEecCCeEEEEEC-CCCceEEE
Q 023772          152 VCLTKTEIIGGSVDGTVRTFDIRVGR---ELSDDLGQPVNCISMSNDG------NCILASCLDSTLRLLDR-STGELLQE  221 (277)
Q Consensus       152 ~~~~~~~~~~g~~d~~i~i~d~~~~~---~~~~~~~~~v~~~~~s~~~------~~l~~~~~d~~i~~wd~-~~~~~~~~  221 (277)
                      +..+...++.++.++.+...++..+.   .-.......|.|++++|.|      .+++.|..+..+.+--. .....+..
T Consensus       495 ~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~  574 (1096)
T KOG1897|consen  495 VSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITH  574 (1096)
T ss_pred             EeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeee
Confidence            33344456666666666666665443   1122346789999999852      26788877766554333 22332222


Q ss_pred             --EeccccceeeeeeEecCCCceEEeecCCCeEEEE--ECcCccc
Q 023772          222 --YKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFW--DLVDASV  262 (277)
Q Consensus       222 --~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iw--d~~~~~~  262 (277)
                        ..+...+..++..++..+..+|.++..||.+.-+  |..+|.+
T Consensus       575 ~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~l  619 (1096)
T KOG1897|consen  575 EQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQL  619 (1096)
T ss_pred             eccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceE
Confidence              2233333334445566667899999999998866  5555543

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=91.16  E-value=14  Score=35.03  Aligned_cols=248  Identities=12%  Similarity=0.107  Sum_probs=117.3

Q ss_pred             cEEEEEEeCCCCEEEEEeCCCcEEEEc--CCCCeeE--EEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 023772           20 AVLAARFNGDGNYCLSCGKDRTIRLWN--PHRGIHI--KTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVI   95 (277)
Q Consensus        20 ~V~~~~~~~~~~~l~s~s~d~~v~iwd--~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~   95 (277)
                      .|.-..|-.|..+|+.+..||.+.-|.  ..+|..-  +...-...|+.--.|+..++.-+-+..|+=.-+|.- +++.+
T Consensus       585 SIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~-n~kLv  663 (1096)
T KOG1897|consen  585 SILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSS-NGKLV  663 (1096)
T ss_pred             heeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEec-CCcEE
Confidence            455666777789999999999998875  4444321  111122446666666665544333444554555543 33333


Q ss_pred             EEeecccCceeEEEEecC--CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC-Ce-EE--------Ee-
Q 023772           96 RKFRGHESEVNAVKFNEY--SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK-TE-II--------GG-  162 (277)
Q Consensus        96 ~~~~~h~~~v~~i~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~--------~g-  162 (277)
                      .+-..-+..-.-+.|+.+  ...++++. .+.+++..+..-+.-.+.+...+ .....++..+ .. +.        .+ 
T Consensus       664 ~spls~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~-~~prrI~~q~~sl~~~v~s~r~e~~~~  741 (1096)
T KOG1897|consen  664 YSPLSLKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLG-ESPRRICYQESSLTFGVLSNRIESSAE  741 (1096)
T ss_pred             EeccchHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCC-CChhheEecccceEEEEEecccccchh
Confidence            221110100011122222  22444443 34466665543222222221111 1111122211 10 10        11 


Q ss_pred             --ecCC---cEEEEEccCCcccccCC------CCCeeEEEEeCC-CCEEEEEe----------cCCeEEEEECCCCceEE
Q 023772          163 --SVDG---TVRTFDIRVGRELSDDL------GQPVNCISMSND-GNCILASC----------LDSTLRLLDRSTGELLQ  220 (277)
Q Consensus       163 --~~d~---~i~i~d~~~~~~~~~~~------~~~v~~~~~s~~-~~~l~~~~----------~d~~i~~wd~~~~~~~~  220 (277)
                        +...   .++++|-.+.+.+....      ...+.+..|..| +.+++.|.          ..|.|.+|.+...+.++
T Consensus       742 ~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~  821 (1096)
T KOG1897|consen  742 YYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLE  821 (1096)
T ss_pred             hcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCcee
Confidence              1122   36677776655443221      123555568777 77777774          25677777776633333


Q ss_pred             EEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCccee
Q 023772          221 EYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVV  273 (277)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v  273 (277)
                      ....+.-.....+.+ --+|+++|+  -...|++|++.+.+.++.-..|...+
T Consensus       822 ~v~e~~v~Gav~aL~-~fngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~  871 (1096)
T KOG1897|consen  822 LVAETVVKGAVYALV-EFNGKLLAG--INQSVRLYEWTTERELRIECNISNPI  871 (1096)
T ss_pred             eeeeeeeccceeehh-hhCCeEEEe--cCcEEEEEEccccceehhhhcccCCe
Confidence            322221111122211 235777765  34589999999886555444444433

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=91.14  E-value=6.6  Score=31.31  Aligned_cols=170  Identities=14%  Similarity=0.042  Sum_probs=87.5

Q ss_pred             eeEEeecc-cCceeEEEEecCCCEEEEEeCCC--cEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEE-eecCCcEE
Q 023772           94 VIRKFRGH-ESEVNAVKFNEYSSVVVSAGYDQ--SLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIG-GSVDGTVR  169 (277)
Q Consensus        94 ~~~~~~~h-~~~v~~i~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~d~~i~  169 (277)
                      ++.++... ..-...+.|..++.++-+.+.-|  .|+.+|+.++.......+... -.--.+..-++.+.- .=.++...
T Consensus        35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~-~FgEGit~~~d~l~qLTWk~~~~f  113 (264)
T PF05096_consen   35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR-YFGEGITILGDKLYQLTWKEGTGF  113 (264)
T ss_dssp             EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT---EEEEEEETTEEEEEESSSSEEE
T ss_pred             EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc-ccceeEEEECCEEEEEEecCCeEE
Confidence            45555422 33456788878888888888766  688888876543222222211 011122223344332 23457778


Q ss_pred             EEEccCCccccc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceee---eeeEecCCCceEEe
Q 023772          170 TFDIRVGRELSD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFK---TDCCLTNSDAHVTG  245 (277)
Q Consensus       170 i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~s  245 (277)
                      +||..+-+.+.. .....=..++  .+++.|+.+.....|+.+|..+.+..+.+.........   ...-+ -+|...|=
T Consensus       114 ~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~-i~G~IyAN  190 (264)
T PF05096_consen  114 VYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEY-INGKIYAN  190 (264)
T ss_dssp             EEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEE-ETTEEEEE
T ss_pred             EEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEE-EcCEEEEE
Confidence            899876554432 1223344555  45667777777778999999887776655432111100   00111 13443333


Q ss_pred             ecCCCeEEEEECcCccceeeec
Q 023772          246 GSEDGYIYFWDLVDASVVAKFK  267 (277)
Q Consensus       246 gs~d~~i~iwd~~~~~~~~~~~  267 (277)
                      -=....|...|..+|+++..+.
T Consensus       191 VW~td~I~~Idp~tG~V~~~iD  212 (264)
T PF05096_consen  191 VWQTDRIVRIDPETGKVVGWID  212 (264)
T ss_dssp             ETTSSEEEEEETTT-BEEEEEE
T ss_pred             eCCCCeEEEEeCCCCeEEEEEE
Confidence            3344567777888887776653

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PRK13684 Ycf48-like protein; Provisional

Probab=90.79  E-value=8.7  Score=32.04  Aligned_cols=107  Identities=15%  Similarity=0.181  Sum_probs=59.0

Q ss_pred             CCcEEEEEEeCCCCEEEEEeCCCcEE-EEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q 023772           18 EGAVLAARFNGDGNYCLSCGKDRTIR-LWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIR   96 (277)
Q Consensus        18 ~~~V~~~~~~~~~~~l~s~s~d~~v~-iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~   96 (277)
                      .+.+..+.+.+++.+++.+.. |.+. .++-...........-...++++.+.++++.++.+ ..|.+.+=+.+.++.-.
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~~-G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~  249 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSSR-GNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWS  249 (334)
T ss_pred             cceEEEEEECCCCeEEEEeCC-ceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccc
Confidence            356788888888877766554 4443 33322111222222334578899999988766654 56765432334443221


Q ss_pred             Eeec----ccCceeEEEEecCCCEEEEEeCCCcEE
Q 023772           97 KFRG----HESEVNAVKFNEYSSVVVSAGYDQSLR  127 (277)
Q Consensus        97 ~~~~----h~~~v~~i~~~~~~~~l~s~~~d~~i~  127 (277)
                      ....    ....+.++.+.+++..++ ++.+|.+.
T Consensus       250 ~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~  283 (334)
T PRK13684        250 KPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL  283 (334)
T ss_pred             cccCCccccccceeeEEEcCCCCEEE-EcCCCeEE
Confidence            1111    123467788888766555 45667554

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=90.28  E-value=11  Score=32.36  Aligned_cols=202  Identities=14%  Similarity=0.141  Sum_probs=97.8

Q ss_pred             cEEEEEEcCCCCEEEEE-eCC----CcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCC-----------c
Q 023772           62 EVRDVHVTADNSKLISC-GGD----RQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQ-----------S  125 (277)
Q Consensus        62 ~v~~~~~~~~~~~l~t~-s~d----~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~-----------~  125 (277)
                      .+....++|++++++-+ +..    ..++++|+++++.+...-... .-..+.|.++++.|+....|.           .
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            34467899999988743 333    459999999998765322111 112389999988776665443           3


Q ss_pred             EEEEeCccCCCcceEeeccccCc--EEEEEec--CCeEEEe-ec--C-CcEEEEEccCC-------cccccCCCCCeeEE
Q 023772          126 LRAWDCRSHSTEPIQIIDSFQDS--VMSVCLT--KTEIIGG-SV--D-GTVRTFDIRVG-------RELSDDLGQPVNCI  190 (277)
Q Consensus       126 i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~g-~~--d-~~i~i~d~~~~-------~~~~~~~~~~v~~~  190 (277)
                      |+.|.+.+...+-..++......  ...+..+  +..++.. ..  + ..+.+.|+...       +.+..........+
T Consensus       204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v  283 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV  283 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred             EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence            77777765544323444433322  3334333  3444332 22  2 34667777653       11111122222333


Q ss_pred             EEeCCCCEEEEE---ecCCeEEEEECCCCce---EEEEeccccceeeeeeEecCCCceEEeecCCC--eEEEEECcCccc
Q 023772          191 SMSNDGNCILAS---CLDSTLRLLDRSTGEL---LQEYKGHICKSFKTDCCLTNSDAHVTGGSEDG--YIYFWDLVDASV  262 (277)
Q Consensus       191 ~~s~~~~~l~~~---~~d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~--~i~iwd~~~~~~  262 (277)
                      ... .+.+++..   ...+.|.-.++.....   ...+..+........+.. ..+.+++.-..++  .|+++++..+..
T Consensus       284 ~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~-~~~~Lvl~~~~~~~~~l~v~~~~~~~~  361 (414)
T PF02897_consen  284 DHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL-FKDYLVLSYRENGSSRLRVYDLDDGKE  361 (414)
T ss_dssp             EEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE-ETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred             Ecc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE-ECCEEEEEEEECCccEEEEEECCCCcE
Confidence            333 33333333   2345666667765432   223333322222232222 2344555554454  477889883333


Q ss_pred             eeee
Q 023772          263 VAKF  266 (277)
Q Consensus       263 ~~~~  266 (277)
                      ...+
T Consensus       362 ~~~~  365 (414)
T PF02897_consen  362 SREI  365 (414)
T ss_dssp             EEEE
T ss_pred             Eeee
Confidence            3333

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=90.10  E-value=13  Score=33.10  Aligned_cols=150  Identities=13%  Similarity=0.180  Sum_probs=80.3

Q ss_pred             cCccEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceeEEeecccCceeEEEEecC----CCEEEEEeCCCcEEEEeCc
Q 023772           59 HGREVRDVHVTADNSKLISCG--GDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEY----SSVVVSAGYDQSLRAWDCR  132 (277)
Q Consensus        59 h~~~v~~~~~~~~~~~l~t~s--~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~----~~~l~s~~~d~~i~iwd~~  132 (277)
                      .-+++..++|.-..+.++|.-  ..|.+++=|   ...+..|.    -|.++.|.|-    ...+++.-....|.+|.+.
T Consensus        18 AiHPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~   90 (671)
T PF15390_consen   18 AIHPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC   90 (671)
T ss_pred             hhccccceEecCCCEEEEEeeeeeCCccccCC---ccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence            346899999985545556643  344444422   23455554    4778888774    3356666778889999875


Q ss_pred             cCCCcce-----Eee---ccccCcEEEEEecCCe-EEEeecCCcEE-EEEccCCc-ccc--cCCCCCeeEEEEeCCCCEE
Q 023772          133 SHSTEPI-----QII---DSFQDSVMSVCLTKTE-IIGGSVDGTVR-TFDIRVGR-ELS--DDLGQPVNCISMSNDGNCI  199 (277)
Q Consensus       133 ~~~~~~~-----~~~---~~~~~~~~~~~~~~~~-~~~g~~d~~i~-i~d~~~~~-~~~--~~~~~~v~~~~~s~~~~~l  199 (277)
                      ....+..     ++.   +..+--...+.|.|+. +++.-....+. +++.+... .+.  ......|.|.+|..||+.|
T Consensus        91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RL  170 (671)
T PF15390_consen   91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRL  170 (671)
T ss_pred             cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEE
Confidence            3221111     111   1111111234445543 33322223332 34443221 111  1345689999999999998


Q ss_pred             EEEecCC-eEEEEECCC
Q 023772          200 LASCLDS-TLRLLDRST  215 (277)
Q Consensus       200 ~~~~~d~-~i~~wd~~~  215 (277)
                      +.+-... .-++||-..
T Consensus       171 VVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  171 VVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             EEEeCCeEEEEEecCch
Confidence            7764432 346898644

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=90.06  E-value=9.6  Score=31.36  Aligned_cols=203  Identities=15%  Similarity=0.167  Sum_probs=109.0

Q ss_pred             EEeCCCC-EEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEee----
Q 023772           25 RFNGDGN-YCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFR----   99 (277)
Q Consensus        25 ~~~~~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~----   99 (277)
                      .|.++.. ++.+--..+.|.-|+..+++ ...+... +.+.++.....+..|+++.  .-+.+++.+++..+..+.    
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~-~~~~~~p-~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~  106 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGK-KRVFPSP-GGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPED  106 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCc-eEEEECC-CCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccC
Confidence            4556665 45566677888888887664 3344433 3445555555556666653  345677776655533221    


Q ss_pred             cc-cCceeEEEEecCCCEEEEEeC-----------CCcEEEEeCccCCCcceEeeccccCcEEEEEecCCe--EE-Eeec
Q 023772          100 GH-ESEVNAVKFNEYSSVVVSAGY-----------DQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE--II-GGSV  164 (277)
Q Consensus       100 ~h-~~~v~~i~~~~~~~~l~s~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~g~~  164 (277)
                      +. ....+...+.|++.+.++...           -|.+...|.. .  ........+-.....++++++.  ++ +=+.
T Consensus       107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g--~~~~l~~~~~~~~NGla~SpDg~tly~aDT~  183 (307)
T COG3386         107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-G--GVVRLLDDDLTIPNGLAFSPDGKTLYVADTP  183 (307)
T ss_pred             CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-C--CEEEeecCcEEecCceEECCCCCEEEEEeCC
Confidence            11 245677888888887766444           1223333321 1  1111122211122344454433  33 3444


Q ss_pred             CCcEEEEEccC--Ccc------c-ccCCCCCeeEEEEeCCCCEEEEEecCC-eEEEEECCCCceEEEEeccccceeeeee
Q 023772          165 DGTVRTFDIRV--GRE------L-SDDLGQPVNCISMSNDGNCILASCLDS-TLRLLDRSTGELLQEYKGHICKSFKTDC  234 (277)
Q Consensus       165 d~~i~i~d~~~--~~~------~-~~~~~~~v~~~~~s~~~~~l~~~~~d~-~i~~wd~~~~~~~~~~~~~~~~~~~~~~  234 (277)
                      .+.|.-|++..  +..      + ........-.++.+.+|++.+++..+| .|..|+.. ++++..+....  .....+
T Consensus       184 ~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~--~~~t~~  260 (307)
T COG3386         184 ANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV--KRPTNP  260 (307)
T ss_pred             CCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC--CCCccc
Confidence            56777776642  110      0 111123344567788888765554444 89999998 89988876542  234555


Q ss_pred             Eec
Q 023772          235 CLT  237 (277)
Q Consensus       235 ~~~  237 (277)
                      +|.
T Consensus       261 ~Fg  263 (307)
T COG3386         261 AFG  263 (307)
T ss_pred             eEe
Confidence            664

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=89.91  E-value=12  Score=32.14  Aligned_cols=107  Identities=12%  Similarity=0.153  Sum_probs=59.8

Q ss_pred             EEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-----e
Q 023772           21 VLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRV-----I   95 (277)
Q Consensus        21 V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~-----~   95 (277)
                      ...+...++|.+++.+.....++-||.-...-...-......+.++.+.+++..++.+ .+|.+. |....++.     .
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f  318 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDF  318 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccce
Confidence            4445567888877776655455556643211111222234568899999888777655 555543 33444431     1


Q ss_pred             EEeec--ccCceeEEEEecCCCEEEEEeCCCcEEEEe
Q 023772           96 RKFRG--HESEVNAVKFNEYSSVVVSAGYDQSLRAWD  130 (277)
Q Consensus        96 ~~~~~--h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd  130 (277)
                      .....  -...+.++.+.++++.+++ +.+|.+....
T Consensus       319 ~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s~  354 (398)
T PLN00033        319 EEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRST  354 (398)
T ss_pred             eecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEeC
Confidence            11111  1234788888887766554 5677666553

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.55  E-value=5.3  Score=38.75  Aligned_cols=180  Identities=16%  Similarity=0.221  Sum_probs=96.2

Q ss_pred             cCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEE--------cCCCCEEEEEeCCCcEEEEE
Q 023772           17 HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHV--------TADNSKLISCGGDRQIFYWD   88 (277)
Q Consensus        17 H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~--------~~~~~~l~t~s~d~~v~~wd   88 (277)
                      |...=..+.+.|.=..+.- +-|..+.+|+.+++.....+.+-+..|..+..        .|.-++++..+.--.|.++-
T Consensus        77 ~~~~~~~mGiFpeI~RaWi-TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilg  155 (1311)
T KOG1900|consen   77 NIECKTDMGIFPEIGRAWI-TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILG  155 (1311)
T ss_pred             CcceeeeeccchhhcceEE-EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEE
Confidence            3333344556665433322 45789999999987777777766667766653        23334444444444555554


Q ss_pred             CC----CCce---e--EEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeE
Q 023772           89 VS----TGRV---I--RKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEI  159 (277)
Q Consensus        89 ~~----~~~~---~--~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (277)
                      +.    ++..   .  .++......|+++....+|+.+++| .||  .+|.+.-....     .+....+..++++...+
T Consensus       156 V~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~-----gWf~~rc~Kiclt~s~l  227 (1311)
T KOG1900|consen  156 VSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAED-----GWFGSRCRKICLTKSVL  227 (1311)
T ss_pred             EEeccccCcccccccceeeecCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccC-----chhhcccccccCchhHH
Confidence            42    1111   1  1122234567888878888887765 555  56665311110     00111122222221110


Q ss_pred             EEeecCCcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCC
Q 023772          160 IGGSVDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRST  215 (277)
Q Consensus       160 ~~g~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~  215 (277)
                      .     . +    +++-..+......+|..++++..-+.+.+=++.+.|+.||+..
T Consensus       228 s-----~-l----vPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  228 S-----S-L----VPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             H-----H-h----hhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence            0     0 0    0000011122356888899988878888888999999999865

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=89.04  E-value=10  Score=30.16  Aligned_cols=182  Identities=13%  Similarity=0.134  Sum_probs=92.8

Q ss_pred             EEeccCccEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeEEeecc-cCceeEEEEecCCCEEEEEeCCCcEEEEeCc
Q 023772           55 TYKSHGREVRDVHVTADNSKLISC-GGDRQIFYWDVSTGRVIRKFRGH-ESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR  132 (277)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~-s~d~~v~~wd~~~~~~~~~~~~h-~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~  132 (277)
                      .+.+-...+..+.|.|+.+.|++. ...+.|...+. +|++++++.-. -...-+|++..++.++++.-.++.+.++++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            444555679999999987766655 45677888886 47777776543 3567788888888777776568888888764


Q ss_pred             cCCCcceEeeccccCcEEEEEecCCeEEEeecCCcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEE
Q 023772          133 SHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLD  212 (277)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd  212 (277)
                      ..... ....     .                   +.-+++..    ....+..+..++|+|.++.|+.+-+..-.++|.
T Consensus        95 ~~~~~-~~~~-----~-------------------~~~~~l~~----~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~  145 (248)
T PF06977_consen   95 DDTTS-LDRA-----D-------------------VQKISLGF----PNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYE  145 (248)
T ss_dssp             ---TT---EE-----E-------------------EEEEE-------S---SS--EEEEEETTTTEEEEEEESSSEEEEE
T ss_pred             ccccc-cchh-----h-------------------ceEEeccc----ccCCCcceEEEEEcCCCCEEEEEeCCCChhhEE
Confidence            32211 0000     0                   01111111    111234467889999877777777776666666


Q ss_pred             CCC---CceEEEEe--ccc----cceeeeeeEecC-CCceEEeecCCCeEEEEECcCccceeeec
Q 023772          213 RST---GELLQEYK--GHI----CKSFKTDCCLTN-SDAHVTGGSEDGYIYFWDLVDASVVAKFK  267 (277)
Q Consensus       213 ~~~---~~~~~~~~--~~~----~~~~~~~~~~~~-~~~~l~sgs~d~~i~iwd~~~~~~~~~~~  267 (277)
                      +..   ...+....  .+.    ...-.....+.| .+.+++-+.++..|-.+| .+|+++..+.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~  209 (248)
T PF06977_consen  146 VNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLS  209 (248)
T ss_dssp             EESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE
T ss_pred             EccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEE
Confidence            543   21111111  111    000011223344 455666777888888888 5677665443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=88.72  E-value=11  Score=34.80  Aligned_cols=110  Identities=10%  Similarity=0.160  Sum_probs=72.1

Q ss_pred             EEEEEEe--CCCCEEEEEeCCCcEEEEcCCC-------C----e---------eEEEEeccCccEEEEEEc--CCCCEEE
Q 023772           21 VLAARFN--GDGNYCLSCGKDRTIRLWNPHR-------G----I---------HIKTYKSHGREVRDVHVT--ADNSKLI   76 (277)
Q Consensus        21 V~~~~~~--~~~~~l~s~s~d~~v~iwd~~~-------~----~---------~~~~~~~h~~~v~~~~~~--~~~~~l~   76 (277)
                      |+.+...  ...+.|+.|..||.|-+|.+++       .    .         +...++ ....+++++++  ...++||
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA  181 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA  181 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence            5555443  3557889999999999996421       0    0         111222 24578999998  7777888


Q ss_pred             EEeCCCcEEEEECCC--Cce-eEEeecccCceeEEEEecCC---C---EEEEEeCCCcEEEEeC
Q 023772           77 SCGGDRQIFYWDVST--GRV-IRKFRGHESEVNAVKFNEYS---S---VVVSAGYDQSLRAWDC  131 (277)
Q Consensus        77 t~s~d~~v~~wd~~~--~~~-~~~~~~h~~~v~~i~~~~~~---~---~l~s~~~d~~i~iwd~  131 (277)
                      .++....|.||-...  .+. ...-..|..-|.+|.|.++.   .   .+++++-.|.+.+|++
T Consensus       182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            888888777775543  111 11111255667788887643   2   7888999999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=88.60  E-value=14  Score=31.24  Aligned_cols=190  Identities=19%  Similarity=0.188  Sum_probs=91.4

Q ss_pred             EEEEEeCCCcEEEEcCCCCeeEEEEecc--CccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeeccc-CceeEE
Q 023772           32 YCLSCGKDRTIRLWNPHRGIHIKTYKSH--GREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHE-SEVNAV  108 (277)
Q Consensus        32 ~l~s~s~d~~v~iwd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~-~~v~~i  108 (277)
                      .+..+..||.+.-.|..+++.+-....-  ...+..-.+..++ .|+.++.++.+..+|..+|+.+..+.... -.+..-
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G-~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~  148 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDG-KIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP  148 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCC-eEEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence            3444577787887888877644322111  0111111222244 58888899999999998999888776555 111111


Q ss_pred             EEecCCCEEEEEeCCCcEEEEeCccCCCcceEeecc-ccCcE-EEEEecCCeEEEeec--CCcEEEEEccCCcccccC--
Q 023772          109 KFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDS-FQDSV-MSVCLTKTEIIGGSV--DGTVRTFDIRVGRELSDD--  182 (277)
Q Consensus       109 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~g~~--d~~i~i~d~~~~~~~~~~--  182 (277)
                      ....++ .+..++.|+.+...|..+........... ....+ .........+..+..  ++.+.-.|.+.+...-..  
T Consensus       149 ~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~  227 (370)
T COG1520         149 PVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQKV  227 (370)
T ss_pred             cEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEeeeeee
Confidence            112222 33333355666665554332211111110 00000 000022223444443  444555566555432210  


Q ss_pred             ---CCC-------CeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEec
Q 023772          183 ---LGQ-------PVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKG  224 (277)
Q Consensus       183 ---~~~-------~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~  224 (277)
                         ...       .+..-...-++. +..++.++.+...|..+++.+..+..
T Consensus       228 ~~~~~~~~~~~~~~~~~~~v~v~~~-~~~~~~~g~~~~l~~~~G~~~W~~~~  278 (370)
T COG1520         228 SQTIGRTAISTTPAVDGGPVYVDGG-VYAGSYGGKLLCLDADTGELIWSFPA  278 (370)
T ss_pred             ecccCcccccccccccCceEEECCc-EEEEecCCeEEEEEcCCCceEEEEec
Confidence               010       000000111222 46677788888999999998887765

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=88.52  E-value=2.5  Score=22.55  Aligned_cols=40  Identities=18%  Similarity=0.058  Sum_probs=26.7

Q ss_pred             CCCCEEEE-EeCCCcEEEEcCCCCeeEEEEeccCccEEEEEE
Q 023772           28 GDGNYCLS-CGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHV   68 (277)
Q Consensus        28 ~~~~~l~s-~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~   68 (277)
                      |++++|+. .-.+++|.++|..+++.+..+... .....+.|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence            46666654 456889999999888887777653 33334443

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.20  E-value=18  Score=31.95  Aligned_cols=34  Identities=12%  Similarity=0.117  Sum_probs=23.8

Q ss_pred             CeeEEEEeCCC---CEEEEEecCCeEEEEECCCCceE
Q 023772          186 PVNCISMSNDG---NCILASCLDSTLRLLDRSTGELL  219 (277)
Q Consensus       186 ~v~~~~~s~~~---~~l~~~~~d~~i~~wd~~~~~~~  219 (277)
                      .+..++|+|+.   ..|..-+.|..||+||+..-+.+
T Consensus       167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             eeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence            35556788864   55667778889999998655443

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=88.17  E-value=7.3  Score=27.50  Aligned_cols=108  Identities=17%  Similarity=0.266  Sum_probs=66.3

Q ss_pred             EEEEEeCCCCEEEEEeCCCcEEEEcCCCC--------eeEEEEeccCccEEEEEEcC-----CCCEEEEEeCCCcEEEEE
Q 023772           22 LAARFNGDGNYCLSCGKDRTIRLWNPHRG--------IHIKTYKSHGREVRDVHVTA-----DNSKLISCGGDRQIFYWD   88 (277)
Q Consensus        22 ~~~~~~~~~~~l~s~s~d~~v~iwd~~~~--------~~~~~~~~h~~~v~~~~~~~-----~~~~l~t~s~d~~v~~wd   88 (277)
                      ..-.|.....-|+.+..-+.|.|++++..        ..+..+. -...|++++--+     +.+.|+.|+ ...+..||
T Consensus         2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYD   79 (136)
T PF14781_consen    2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYD   79 (136)
T ss_pred             eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEE
Confidence            34567777777888888899999997643        2334443 245677776433     234455554 55799999


Q ss_pred             CCCCceeEEeecccCceeEEEEecC---CCEEEEEeCCCcEEEEeCc
Q 023772           89 VSTGRVIRKFRGHESEVNAVKFNEY---SSVVVSAGYDQSLRAWDCR  132 (277)
Q Consensus        89 ~~~~~~~~~~~~h~~~v~~i~~~~~---~~~l~s~~~d~~i~iwd~~  132 (277)
                      ++...-+. ++.-...|+++.+-.-   ..-++..+.+..|.-||-.
T Consensus        80 V~~N~d~F-yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~  125 (136)
T PF14781_consen   80 VENNSDLF-YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYE  125 (136)
T ss_pred             cccCchhh-hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCC
Confidence            98765543 3334567777776432   2334445556667777643

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=88.05  E-value=15  Score=31.04  Aligned_cols=139  Identities=11%  Similarity=0.007  Sum_probs=66.4

Q ss_pred             eEEEEecCCCEEEEEe-----------CCC-cEEEEeCccCC--CcceEeeccccCcEEEEEecCCeEEEeecCCcEEEE
Q 023772          106 NAVKFNEYSSVVVSAG-----------YDQ-SLRAWDCRSHS--TEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTF  171 (277)
Q Consensus       106 ~~i~~~~~~~~l~s~~-----------~d~-~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~  171 (277)
                      ..|++.++++++++..           ..+ .|.+++-....  ......+.........+.+.+..++++......++.
T Consensus        17 ~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~GlyV~~~~~i~~~~   96 (367)
T TIGR02604        17 IAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGGVYVATPPDILFLR   96 (367)
T ss_pred             ceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCCEEEeCCCeEEEEe
Confidence            4577888887776643           122 56666543222  112222222222234444444445555544433343


Q ss_pred             EccC------C-cccccC-------CCCCeeEEEEeCCCCEEEEEecC-------------------CeEEEEECCCCce
Q 023772          172 DIRV------G-RELSDD-------LGQPVNCISMSNDGNCILASCLD-------------------STLRLLDRSTGEL  218 (277)
Q Consensus       172 d~~~------~-~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~d-------------------~~i~~wd~~~~~~  218 (277)
                      |...      . +.+...       ..+..+.+.|.|+|.++++-+..                   +.|.-+|...++.
T Consensus        97 d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~  176 (367)
T TIGR02604        97 DKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKL  176 (367)
T ss_pred             CCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeE
Confidence            4321      1 111111       12347789999999876654421                   3455556654443


Q ss_pred             EEEEeccccceeeeeeEecCCCceEEeec
Q 023772          219 LQEYKGHICKSFKTDCCLTNSDAHVTGGS  247 (277)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs  247 (277)
                       ..+...  .....-.++.++|.++++-.
T Consensus       177 -e~~a~G--~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       177 -RVVAHG--FQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             -EEEecC--cCCCccceECCCCCEEEEcc
Confidence             223211  11123356777787766533

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=87.38  E-value=14  Score=31.30  Aligned_cols=99  Identities=11%  Similarity=0.185  Sum_probs=54.9

Q ss_pred             cEEEEEEeCCCCEEEEEeCCCcEEEEcCCC-----Ce---eEEEEec----cCccEEEEEEcCCCCEEEEEeCC------
Q 023772           20 AVLAARFNGDGNYCLSCGKDRTIRLWNPHR-----GI---HIKTYKS----HGREVRDVHVTADNSKLISCGGD------   81 (277)
Q Consensus        20 ~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~-----~~---~~~~~~~----h~~~v~~~~~~~~~~~l~t~s~d------   81 (277)
                      ..+.+++.++| ++++ +.....++.|...     ++   .+..+..    +......+.|.|++.+.++-+..      
T Consensus        73 ~p~Gi~~~~~G-lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~  150 (367)
T TIGR02604        73 MVTGLAVAVGG-VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVT  150 (367)
T ss_pred             CccceeEecCC-EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceec
Confidence            34678888888 5444 4544444545421     11   1222322    23457889999999877765521      


Q ss_pred             -------------CcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEe
Q 023772           82 -------------RQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAG  121 (277)
Q Consensus        82 -------------~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~  121 (277)
                                   +.+.-++..+++....-.++. ..+.++|+++++++++-.
T Consensus       151 ~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~r-np~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       151 RPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQ-NPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             cCCCccCcccccCceEEEEecCCCeEEEEecCcC-CCccceECCCCCEEEEcc
Confidence                         345555555444322122222 235688988888877644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>smart00564 PQQ beta-propeller repeat

Probab=87.29  E-value=2  Score=21.56  Aligned_cols=25  Identities=40%  Similarity=0.577  Sum_probs=20.2

Q ss_pred             EEEEEecCCeEEEEECCCCceEEEE
Q 023772          198 CILASCLDSTLRLLDRSTGELLQEY  222 (277)
Q Consensus       198 ~l~~~~~d~~i~~wd~~~~~~~~~~  222 (277)
                      .+++++.++.++.+|.++|+.+..+
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEEc
Confidence            5777888999999999888877653

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>smart00564 PQQ beta-propeller repeat

Probab=86.49  E-value=2.1  Score=21.45  Aligned_cols=26  Identities=15%  Similarity=0.392  Sum_probs=21.5

Q ss_pred             CEEEEEeCCCcEEEEECCCCceeEEe
Q 023772           73 SKLISCGGDRQIFYWDVSTGRVIRKF   98 (277)
Q Consensus        73 ~~l~t~s~d~~v~~wd~~~~~~~~~~   98 (277)
                      ..++.++.++.+..+|.++|+.+.++
T Consensus         7 ~~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        7 GTVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence            46788889999999999998877653

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=86.38  E-value=3.1  Score=22.15  Aligned_cols=32  Identities=13%  Similarity=0.098  Sum_probs=23.6

Q ss_pred             CCCceEEe-ecCCCeEEEEECcCccceeeeccC
Q 023772          238 NSDAHVTG-GSEDGYIYFWDLVDASVVAKFKAH  269 (277)
Q Consensus       238 ~~~~~l~s-gs~d~~i~iwd~~~~~~~~~~~~h  269 (277)
                      |++++|.. .-.+++|.++|..+++.+.++..-
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg   33 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG   33 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence            34555444 456889999999999998888743

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=86.32  E-value=3.5  Score=35.37  Aligned_cols=166  Identities=15%  Similarity=0.157  Sum_probs=92.6

Q ss_pred             EeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-eEEee-ccc----Ccee-EEEEecCCCEEEEEeCCCcEEE
Q 023772           56 YKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRV-IRKFR-GHE----SEVN-AVKFNEYSSVVVSAGYDQSLRA  128 (277)
Q Consensus        56 ~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~-~~~~~-~h~----~~v~-~i~~~~~~~~l~s~~~d~~i~i  128 (277)
                      +.....++..+-..|+++.++.-+. .++.++++.+... ++.+. ...    ..|. ++.....+.-++.++.||-|.-
T Consensus       216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQ  294 (733)
T COG4590         216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQ  294 (733)
T ss_pred             cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceee
Confidence            3344456778888999998765544 5788888764322 11111 101    1122 1112233456777888988877


Q ss_pred             E-eCccCCC---cceEeeccccCcEEEEEec--CCeEEEeecCCcEEEEEccCCcccc-cCCCCCeeEEEEeCCCCEEEE
Q 023772          129 W-DCRSHST---EPIQIIDSFQDSVMSVCLT--KTEIIGGSVDGTVRTFDIRVGRELS-DDLGQPVNCISMSNDGNCILA  201 (277)
Q Consensus       129 w-d~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~g~~d~~i~i~d~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~  201 (277)
                      | |.+....   ..+..+.-.+.++..+.+.  .+.+++-...|++..+.-...+.+. ...-+.+.-+++||.+.++++
T Consensus       295 WFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~  374 (733)
T COG4590         295 WFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLS  374 (733)
T ss_pred             eeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchhee
Confidence            7 4443221   2222222223333333333  2346666777888776544333221 222346677899999998876


Q ss_pred             EecCCeEEEEECCCCceEEEEe
Q 023772          202 SCLDSTLRLLDRSTGELLQEYK  223 (277)
Q Consensus       202 ~~~d~~i~~wd~~~~~~~~~~~  223 (277)
                      - ..|.|+++.+++..+.-.+.
T Consensus       375 e-~~gki~~~~l~Nr~Peisws  395 (733)
T COG4590         375 E-DQGKIRLAQLENRNPEISWS  395 (733)
T ss_pred             e-cCCceEEEEecCCCCCccHH
Confidence            4 56789999988765544443

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=85.80  E-value=19  Score=29.78  Aligned_cols=64  Identities=13%  Similarity=0.081  Sum_probs=32.3

Q ss_pred             cCCeEEEeec-----CCcEEEEEccCCc--ccccCC-CCCeeEEEEeCCCCEEEEEecCCe----EEEEECCCCce
Q 023772          155 TKTEIIGGSV-----DGTVRTFDIRVGR--ELSDDL-GQPVNCISMSNDGNCILASCLDST----LRLLDRSTGEL  218 (277)
Q Consensus       155 ~~~~~~~g~~-----d~~i~i~d~~~~~--~~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~----i~~wd~~~~~~  218 (277)
                      .....+.|+.     ...+..||+.+.+  .+.... .......+...+++.++.|+.++.    +..||.++.+.
T Consensus       123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W  198 (323)
T TIGR03548       123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW  198 (323)
T ss_pred             CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence            3444445553     2357778887543  221111 111222223345667777776542    45788877654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF01011 PQQ: PQQ enzyme repeat family

Probab=85.55  E-value=3.3  Score=21.84  Aligned_cols=27  Identities=26%  Similarity=0.385  Sum_probs=22.9

Q ss_pred             EEEEEecCCeEEEEECCCCceEEEEec
Q 023772          198 CILASCLDSTLRLLDRSTGELLQEYKG  224 (277)
Q Consensus       198 ~l~~~~~d~~i~~wd~~~~~~~~~~~~  224 (277)
                      .+..++.||.++-.|.++|+.+..+..
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~   28 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQT   28 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence            356668999999999999999988764

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=85.30  E-value=24  Score=30.52  Aligned_cols=185  Identities=19%  Similarity=0.268  Sum_probs=85.0

Q ss_pred             CCCEEEEEe-CCCcEEEEcCCC----CeeEEEEec---cC----ccEEEEEEcCCCCEEEEE--eCC----CcEEEEECC
Q 023772           29 DGNYCLSCG-KDRTIRLWNPHR----GIHIKTYKS---HG----REVRDVHVTADNSKLISC--GGD----RQIFYWDVS   90 (277)
Q Consensus        29 ~~~~l~s~s-~d~~v~iwd~~~----~~~~~~~~~---h~----~~v~~~~~~~~~~~l~t~--s~d----~~v~~wd~~   90 (277)
                      +.++|+..+ ....|.|.|+.+    .+..++++.   +.    .....+..-|+++.++|+  ..+    |-+.+.|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            456776655 678888998763    345555553   11    234455666888888885  222    467888888


Q ss_pred             CCceeEEeecccC---ceeEEEEecCCCEEEEEe--------------------CCCcEEEEeCccCCCcceEeeccccC
Q 023772           91 TGRVIRKFRGHES---EVNAVKFNEYSSVVVSAG--------------------YDQSLRAWDCRSHSTEPIQIIDSFQD  147 (277)
Q Consensus        91 ~~~~~~~~~~h~~---~v~~i~~~~~~~~l~s~~--------------------~d~~i~iwd~~~~~~~~~~~~~~~~~  147 (277)
                      +-++...+.....   --...-+.|..+.++|..                    ...++.+||+....  ..+.+.-...
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~--~~Q~idLg~~  243 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK--LLQTIDLGEE  243 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE--EEEEEES-TT
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc--EeeEEecCCC
Confidence            7777766654322   123445567777777763                    45789999997653  3444433222


Q ss_pred             c--EEEEEe--cCCe---EEEeecCCcEEEEEc-cCCc----c---ccc---------C-------CCCCeeEEEEeCCC
Q 023772          148 S--VMSVCL--TKTE---IIGGSVDGTVRTFDI-RVGR----E---LSD---------D-------LGQPVNCISMSNDG  196 (277)
Q Consensus       148 ~--~~~~~~--~~~~---~~~g~~d~~i~i~d~-~~~~----~---~~~---------~-------~~~~v~~~~~s~~~  196 (277)
                      .  ...+.+  ++..   ++.+.....|-.|-- ..++    .   +..         .       ...-++.+.+|.|.
T Consensus       244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD  323 (461)
T PF05694_consen  244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD  323 (461)
T ss_dssp             EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred             CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence            2  222222  3322   444444444443322 2221    0   100         0       02347889999999


Q ss_pred             CEEEEEe-cCCeEEEEECCC
Q 023772          197 NCILASC-LDSTLRLLDRST  215 (277)
Q Consensus       197 ~~l~~~~-~d~~i~~wd~~~  215 (277)
                      ++|..+. .+|.+|.||+..
T Consensus       324 rfLYvs~W~~GdvrqYDISD  343 (461)
T PF05694_consen  324 RFLYVSNWLHGDVRQYDISD  343 (461)
T ss_dssp             -EEEEEETTTTEEEEEE-SS
T ss_pred             CEEEEEcccCCcEEEEecCC
Confidence            9986655 689999999865

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=85.27  E-value=16  Score=29.62  Aligned_cols=93  Identities=14%  Similarity=0.159  Sum_probs=57.4

Q ss_pred             CCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEe------CCCcEEEEECCCCceeEEeecc-----cCceeE
Q 023772           39 DRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCG------GDRQIFYWDVSTGRVIRKFRGH-----ESEVNA  107 (277)
Q Consensus        39 d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s------~d~~v~~wd~~~~~~~~~~~~h-----~~~v~~  107 (277)
                      -..|.+||..+.+...--..-.+.|+++.|..+++.++.|.      ....+..||.++.. ...+...     ..+|..
T Consensus        15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~a   93 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVTA   93 (281)
T ss_pred             CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEEE
Confidence            35789999877655544444567899999997777777764      35568889887654 2233331     367877


Q ss_pred             EEEec-CC-CEEEEEe---CCCcEEEEeCc
Q 023772          108 VKFNE-YS-SVVVSAG---YDQSLRAWDCR  132 (277)
Q Consensus       108 i~~~~-~~-~~l~s~~---~d~~i~iwd~~  132 (277)
                      +.+.. +. +..+.|.   .+..+..||-.
T Consensus        94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs  123 (281)
T PF12768_consen   94 LTFISNDGSNFWVAGRSANGSTFLMKYDGS  123 (281)
T ss_pred             EEeeccCCceEEEeceecCCCceEEEEcCC
Confidence            77743 22 3443332   23446666643

>PF01011 PQQ: PQQ enzyme repeat family

Probab=84.98  E-value=3.4  Score=21.77  Aligned_cols=27  Identities=26%  Similarity=0.458  Sum_probs=22.8

Q ss_pred             EEEEEeCCCcEEEEECCCCceeEEeec
Q 023772           74 KLISCGGDRQIFYWDVSTGRVIRKFRG  100 (277)
Q Consensus        74 ~l~t~s~d~~v~~wd~~~~~~~~~~~~  100 (277)
                      .++.+..||.+.-.|.++|+.+..++.
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~   28 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQT   28 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence            456668999999999999999887764

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.50  E-value=17  Score=31.50  Aligned_cols=104  Identities=14%  Similarity=0.188  Sum_probs=68.3

Q ss_pred             eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCee----EEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 023772           14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIH----IKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDV   89 (277)
Q Consensus        14 l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~----~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~   89 (277)
                      -..-+|+|.++.|++|.+.||.-=.|.+|.+.+-...+.    ..+.+..+..|....|..+ .-++-.+..| +-+|.+
T Consensus        62 dm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v  139 (657)
T KOG2377|consen   62 DMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQV  139 (657)
T ss_pred             eecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEE
Confidence            345678999999999999999999999999998632221    2223334456888888765 4454444333 556655


Q ss_pred             CCC-ceeEEeecccCceeEEEEecCCCEEEE
Q 023772           90 STG-RVIRKFRGHESEVNAVKFNEYSSVVVS  119 (277)
Q Consensus        90 ~~~-~~~~~~~~h~~~v~~i~~~~~~~~l~s  119 (277)
                      ... +.++..+.|+..|+--.|.++.+.++-
T Consensus       140 ~pekrslRlVks~~~nvnWy~yc~et~v~LL  170 (657)
T KOG2377|consen  140 LPEKRSLRLVKSHNLNVNWYMYCPETAVILL  170 (657)
T ss_pred             chhhhhhhhhhhcccCccEEEEccccceEee
Confidence            432 234555667777777777777665433

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=84.48  E-value=26  Score=30.29  Aligned_cols=175  Identities=16%  Similarity=0.180  Sum_probs=80.3

Q ss_pred             CCCCEEEEE--eCC----CcEEEEcCCCCeeEEEEeccC---ccEEEEEEcCCCCEEEEEeCC-----------------
Q 023772           28 GDGNYCLSC--GKD----RTIRLWNPHRGIHIKTYKSHG---REVRDVHVTADNSKLISCGGD-----------------   81 (277)
Q Consensus        28 ~~~~~l~s~--s~d----~~v~iwd~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~t~s~d-----------------   81 (277)
                      |+|+.++|+  ..+    |.+.+.|-++.+.....+...   .--....+.|..+.++|+..-                 
T Consensus       139 p~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~  218 (461)
T PF05694_consen  139 PDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAG  218 (461)
T ss_dssp             SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH
T ss_pred             CCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcc
Confidence            788888875  333    567788888777766665432   235677888888888887532                 


Q ss_pred             ---CcEEEEECCCCceeEEeecccC--ceeEEEEec--CCCE-EEEEeCCCcEEEEeCccCCC---cceEeecc------
Q 023772           82 ---RQIFYWDVSTGRVIRKFRGHES--EVNAVKFNE--YSSV-VVSAGYDQSLRAWDCRSHST---EPIQIIDS------  144 (277)
Q Consensus        82 ---~~v~~wd~~~~~~~~~~~~h~~--~v~~i~~~~--~~~~-l~s~~~d~~i~iwd~~~~~~---~~~~~~~~------  144 (277)
                         .++.+||..+.++++++.--..  ....+.|..  +... ++.+....+|..|--.....   +.+..+..      
T Consensus       219 ~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~  298 (461)
T PF05694_consen  219 KYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGW  298 (461)
T ss_dssp             -S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS
T ss_pred             cccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcc
Confidence               5799999999999888764322  234566643  3333 44444555555553211110   11111110      


Q ss_pred             ----c-------cCcEEEEEe--cCCeE-EEeecCCcEEEEEccCCccccc---------------------CCCCCeeE
Q 023772          145 ----F-------QDSVMSVCL--TKTEI-IGGSVDGTVRTFDIRVGRELSD---------------------DLGQPVNC  189 (277)
Q Consensus       145 ----~-------~~~~~~~~~--~~~~~-~~g~~d~~i~i~d~~~~~~~~~---------------------~~~~~v~~  189 (277)
                          .       +.-++.+.+  +...| ++.=.+|.+|.||+........                     ......+.
T Consensus       299 ~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqM  378 (461)
T PF05694_consen  299 ILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQM  378 (461)
T ss_dssp             ---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----
T ss_pred             cccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCe
Confidence                0       122344333  34444 4556689999999965321110                     01123467


Q ss_pred             EEEeCCCCEEEEE
Q 023772          190 ISMSNDGNCILAS  202 (277)
Q Consensus       190 ~~~s~~~~~l~~~  202 (277)
                      +.+|.||+.|...
T Consensus       379 vqlS~DGkRlYvT  391 (461)
T PF05694_consen  379 VQLSLDGKRLYVT  391 (461)
T ss_dssp             EEE-TTSSEEEEE
T ss_pred             EEEccCCeEEEEE
Confidence            8888888876544

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=83.32  E-value=21  Score=28.28  Aligned_cols=82  Identities=11%  Similarity=0.024  Sum_probs=43.2

Q ss_pred             EEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeC-C--CcEEEEECCCC--cee-EEe---ecccCceeEEEEec
Q 023772           42 IRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGG-D--RQIFYWDVSTG--RVI-RKF---RGHESEVNAVKFNE  112 (277)
Q Consensus        42 v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~-d--~~v~~wd~~~~--~~~-~~~---~~h~~~v~~i~~~~  112 (277)
                      -.+||+.+++....--...--+.+-.+.++|+.|.+|+. |  ..+++++..+.  .+- ...   -.....=.+....+
T Consensus        48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~  127 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP  127 (243)
T ss_pred             EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence            467888876543222222333455567789999998875 2  35777775430  110 000   01111222344456


Q ss_pred             CCCEEEEEeCC
Q 023772          113 YSSVVVSAGYD  123 (277)
Q Consensus       113 ~~~~l~s~~~d  123 (277)
                      ||+.++.|+.+
T Consensus       128 DG~vlIvGG~~  138 (243)
T PF07250_consen  128 DGRVLIVGGSN  138 (243)
T ss_pred             CCCEEEEeCcC
Confidence            77777777665

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=82.70  E-value=25  Score=28.87  Aligned_cols=73  Identities=23%  Similarity=0.419  Sum_probs=51.4

Q ss_pred             CeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceee---eeeEecCCCceEEeecCCCeEEEEECc
Q 023772          186 PVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFK---TDCCLTNSDAHVTGGSEDGYIYFWDLV  258 (277)
Q Consensus       186 ~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~sgs~d~~i~iwd~~  258 (277)
                      .++++...++|.+|++.-.-.+|.+.|.++|+.+..+.|.....+.   ...+..-+-+++-.+..++.|.++|-.
T Consensus       145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~  220 (299)
T PF14269_consen  145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA  220 (299)
T ss_pred             EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence            4888898999999999988889999999999999888765221111   112223334445455677788888763

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=81.72  E-value=5.8  Score=20.81  Aligned_cols=29  Identities=14%  Similarity=0.363  Sum_probs=19.3

Q ss_pred             cCCcEEEEEEeCCCCEEEE-EeCC--CcEEEE
Q 023772           17 HEGAVLAARFNGDGNYCLS-CGKD--RTIRLW   45 (277)
Q Consensus        17 H~~~V~~~~~~~~~~~l~s-~s~d--~~v~iw   45 (277)
                      ..+.-....|+|||++|+- ...+  |.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            4456678899999998884 4444  555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=81.58  E-value=28  Score=28.59  Aligned_cols=153  Identities=14%  Similarity=0.155  Sum_probs=71.0

Q ss_pred             EeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCC
Q 023772           56 YKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHS  135 (277)
Q Consensus        56 ~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~  135 (277)
                      ...-.+.+..+..++++.+++.++.-....-||.....=...-+.-..+|.+|.|.|++.+.+.+ ..|.|+.=+.....
T Consensus       140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~  218 (302)
T PF14870_consen  140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG  218 (302)
T ss_dssp             E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred             ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence            34445678888889999888777555555677654221111222346789999999998876654 78888876621110


Q ss_pred             C---cceEeeccccCcEEEEEecC-CeEEEeecCCcEEEEEccCCccccc-----CCCCCeeEEEEeCCCCEEEEEecCC
Q 023772          136 T---EPIQIIDSFQDSVMSVCLTK-TEIIGGSVDGTVRTFDIRVGRELSD-----DLGQPVNCISMSNDGNCILASCLDS  206 (277)
Q Consensus       136 ~---~~~~~~~~~~~~~~~~~~~~-~~~~~g~~d~~i~i~d~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~d~  206 (277)
                      .   +++.......-.+..+.+.+ +.+..++..|.+.+ -...++....     ........+.|.+..+-++. +.+|
T Consensus       219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~-S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G  296 (302)
T PF14870_consen  219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLV-STDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDG  296 (302)
T ss_dssp             EEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEE-ESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STT
T ss_pred             cccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEE-eCCCCccceECccccCCCCceEEEEEcCCCceEEE-CCCc
Confidence            0   00100111122356666654 45666666665543 2223332221     22345777888765554444 5677


Q ss_pred             eEEEE
Q 023772          207 TLRLL  211 (277)
Q Consensus       207 ~i~~w  211 (277)
                      .|--|
T Consensus       297 ~ll~~  301 (302)
T PF14870_consen  297 VLLRY  301 (302)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            66444

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=81.20  E-value=26  Score=27.91  Aligned_cols=142  Identities=13%  Similarity=0.143  Sum_probs=78.3

Q ss_pred             cEEEEEEcCCCCEEEEEe---CCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEe-CccCCCc
Q 023772           62 EVRDVHVTADNSKLISCG---GDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWD-CRSHSTE  137 (277)
Q Consensus        62 ~v~~~~~~~~~~~l~t~s---~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~  137 (277)
                      .+.+.+++++++.++...   ....+.++...  ....... -...+..-.|.+++...+....+...+++. .......
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            688999999999887665   23345555433  3222221 122666678888887777766666666663 2222222


Q ss_pred             ceEeeccccC-cEEEEEecCC--eEEE---eecCCcEEEEEccCCc-----c------cccCCCCCeeEEEEeCCCCEEE
Q 023772          138 PIQIIDSFQD-SVMSVCLTKT--EIIG---GSVDGTVRTFDIRVGR-----E------LSDDLGQPVNCISMSNDGNCIL  200 (277)
Q Consensus       138 ~~~~~~~~~~-~~~~~~~~~~--~~~~---g~~d~~i~i~d~~~~~-----~------~~~~~~~~v~~~~~s~~~~~l~  200 (277)
                      +...-..... .|..+.++++  .++.   ...++.|.+--+....     .      +.......+..++|.+++.+++
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V  181 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV  181 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence            2222111111 5666666654  3332   2334666665443111     1      1112235788999999998776


Q ss_pred             EEecCC
Q 023772          201 ASCLDS  206 (277)
Q Consensus       201 ~~~~d~  206 (277)
                      .+...+
T Consensus       182 ~~~~~~  187 (253)
T PF10647_consen  182 LGRSAG  187 (253)
T ss_pred             EeCCCC
Confidence            665443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.17  E-value=46  Score=30.81  Aligned_cols=185  Identities=11%  Similarity=0.160  Sum_probs=89.4

Q ss_pred             eCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcce-EeeccccCcEEEEEecCC
Q 023772           79 GGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPI-QIIDSFQDSVMSVCLTKT  157 (277)
Q Consensus        79 s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~  157 (277)
                      +.-..|++++. +|+++.+......++-.+.|+.+. .|+....||++.+|++-....+.. ...+.....|..+.+-.+
T Consensus        61 ~a~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~  138 (829)
T KOG2280|consen   61 SARPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHN  138 (829)
T ss_pred             ccceeEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecC
Confidence            34456888886 456655554444477779998765 455568999999999753222111 111222333444444445


Q ss_pred             eEEEeecCCcEEEE-EccCCc--cccc-CCC-CCeeEEEEeCCC--CEEEEEe--cCCeEEEEECCCCceEEEEeccccc
Q 023772          158 EIIGGSVDGTVRTF-DIRVGR--ELSD-DLG-QPVNCISMSNDG--NCILASC--LDSTLRLLDRSTGELLQEYKGHICK  228 (277)
Q Consensus       158 ~~~~g~~d~~i~i~-d~~~~~--~~~~-~~~-~~v~~~~~s~~~--~~l~~~~--~d~~i~~wd~~~~~~~~~~~~~~~~  228 (277)
                      .++.-..+|.+.+- +.....  .... ... .+-+|-+.-+++  ..++..-  ..+ ..++...... ++...-....
T Consensus       139 GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~-~q~~~~~~~~  216 (829)
T KOG2280|consen  139 GVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESR-VQLHALSWPN  216 (829)
T ss_pred             ceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceeccc-ccccccCCCC
Confidence            66655556665442 222111  1111 110 111222222221  1111110  111 0111111111 0111100001


Q ss_pred             eeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeec
Q 023772          229 SFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFK  267 (277)
Q Consensus       229 ~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~  267 (277)
                      ....-+..||+.++++-=.++|.|.+-+++..+..-.+.
T Consensus       217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence            223446678888888888888999888877766655544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	277
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-36
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-36
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-36
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		3e-36
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		3e-36
2h9l_A	329	Wdr5delta23 Length = 329		3e-36
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		3e-36
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		3e-36
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		3e-36
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-36
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		3e-36
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		3e-36
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		3e-36
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		5e-36
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		5e-36
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-35
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-35
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		5e-20
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		1e-11
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		5e-04
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-19
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-18
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		9e-17
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		1e-16
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		2e-16
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		2e-16
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		2e-16
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-16
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-16
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		3e-16
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-14
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		2e-14
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		1e-09
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		4e-13
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		5e-13
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		9e-12
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		1e-11
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		2e-11
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		8e-06
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		7e-11
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		7e-11
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		9e-11
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		3e-10
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		6e-10
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		1e-09
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		2e-07
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		1e-09
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		7e-08
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		1e-09
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		6e-08
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		1e-09
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		2e-07
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		1e-09
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		2e-07
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		5e-09
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		2e-08
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		2e-08
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		7e-08
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		8e-08
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		9e-08
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		2e-07
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		2e-07
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		6e-04
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		2e-07
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		6e-04
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		2e-07
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		8e-04
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		2e-07
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		1e-06
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		4e-06
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		8e-06
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		4e-04
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		8e-06
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		1e-05
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		1e-05
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		4e-04
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		1e-05
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		4e-04
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		2e-05
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		2e-05
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		3e-05
3jpx_A	402	Eed: A Novel Histone Trimethyllysine Binder Within		3e-04
3jzn_A	366	Structure Of Eed In Apo Form Length = 366		4e-04
3iiw_A	365	Crystal Structure Of Eed In Complex With A Trimethy		4e-04
2qxv_A	361	Structural Basis Of Ezh2 Recognition By Eed Length		4e-04
3iiy_A	365	Crystal Structure Of Eed In Complex With A Trimethy		4e-04
4g56_B	357	Crystal Structure Of Full Length Prmt5/mep50 Comple		4e-04
4g56_B	357	Crystal Structure Of Full Length Prmt5/mep50 Comple		6e-04
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		4e-04
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		4e-04
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		5e-04

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score =  149 bits (375), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 142/270 (52%), Gaps = 14/270 (5%)
Query: 13  VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
            L GH  AV + +F+ +G +  S   D+ I++W  + G   KT   H   + DV  ++D+
Sbjct: 40  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 73  SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
           + L+S   D+ +  WDVS+G+ ++  +GH + V    FN  S+++VS  +D+S+R WD +
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 159
Query: 133 SHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVG---RELSDDLGQPV 187
           +     ++ + +  D V +V   +  + I+  S DG  R +D   G   + L DD   PV
Sbjct: 160 TGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 217
Query: 188 NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN----SDAHV 243
           + +  S +G  ILA+ LD+TL+L D S G+ L+ Y GH  + +   C   N        +
Sbjct: 218 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWI 274
Query: 244 TGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
             GSED  +Y W+L    +V K + H+ VV
Sbjct: 275 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 304

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score =  149 bits (375), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 142/270 (52%), Gaps = 14/270 (5%)
Query: 13  VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
            L GH  AV + +F+ +G +  S   D+ I++W  + G   KT   H   + DV  ++D+
Sbjct: 42  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 101
Query: 73  SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
           + L+S   D+ +  WDVS+G+ ++  +GH + V    FN  S+++VS  +D+S+R WD +
Sbjct: 102 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 161
Query: 133 SHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVG---RELSDDLGQPV 187
           +     ++ + +  D V +V   +  + I+  S DG  R +D   G   + L DD   PV
Sbjct: 162 TGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 219
Query: 188 NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN----SDAHV 243
           + +  S +G  ILA+ LD+TL+L D S G+ L+ Y GH  + +   C   N        +
Sbjct: 220 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWI 276
Query: 244 TGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
             GSED  +Y W+L    +V K + H+ VV
Sbjct: 277 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 306

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 142/270 (52%), Gaps = 14/270 (5%)
Query: 13  VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
            L GH  AV + +F+ +G +  S   D+ I++W  + G   KT   H   + DV  ++D+
Sbjct: 24  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 73  SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
           + L+S   D+ +  WDVS+G+ ++  +GH + V    FN  S+++VS  +D+S+R WD +
Sbjct: 84  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 133 SHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVG---RELSDDLGQPV 187
           +     ++ + +  D V +V   +  + I+  S DG  R +D   G   + L DD   PV
Sbjct: 144 TGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 201
Query: 188 NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN----SDAHV 243
           + +  S +G  ILA+ LD+TL+L D S G+ L+ Y GH  + +   C   N        +
Sbjct: 202 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWI 258
Query: 244 TGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
             GSED  +Y W+L    +V K + H+ VV
Sbjct: 259 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 288

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score =  148 bits (374), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 142/270 (52%), Gaps = 14/270 (5%)
Query: 13  VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
            L GH  AV + +F+ +G +  S   D+ I++W  + G   KT   H   + DV  ++D+
Sbjct: 24  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 73  SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
           + L+S   D+ +  WDVS+G+ ++  +GH + V    FN  S+++VS  +D+S+R WD +
Sbjct: 84  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 133 SHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVG---RELSDDLGQPV 187
           +     ++ + +  D V +V   +  + I+  S DG  R +D   G   + L DD   PV
Sbjct: 144 TGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 201
Query: 188 NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN----SDAHV 243
           + +  S +G  ILA+ LD+TL+L D S G+ L+ Y GH  + +   C   N        +
Sbjct: 202 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWI 258
Query: 244 TGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
             GSED  +Y W+L    +V K + H+ VV
Sbjct: 259 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 288

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score =  148 bits (374), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 142/270 (52%), Gaps = 14/270 (5%)
Query: 13  VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
            L GH  AV + +F+ +G +  S   D+ I++W  + G   KT   H   + DV  ++D+
Sbjct: 24  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 73  SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
           + L+S   D+ +  WDVS+G+ ++  +GH + V    FN  S+++VS  +D+S+R WD +
Sbjct: 84  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 133 SHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVG---RELSDDLGQPV 187
           +     ++ + +  D V +V   +  + I+  S DG  R +D   G   + L DD   PV
Sbjct: 144 TGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 201
Query: 188 NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN----SDAHV 243
           + +  S +G  ILA+ LD+TL+L D S G+ L+ Y GH  + +   C   N        +
Sbjct: 202 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWI 258
Query: 244 TGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
             GSED  +Y W+L    +V K + H+ VV
Sbjct: 259 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 288

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score =  148 bits (374), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 142/270 (52%), Gaps = 14/270 (5%)
Query: 13  VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
            L GH  AV + +F+ +G +  S   D+ I++W  + G   KT   H   + DV  ++D+
Sbjct: 35  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 94
Query: 73  SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
           + L+S   D+ +  WDVS+G+ ++  +GH + V    FN  S+++VS  +D+S+R WD +
Sbjct: 95  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 154
Query: 133 SHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVG---RELSDDLGQPV 187
           +     ++ + +  D V +V   +  + I+  S DG  R +D   G   + L DD   PV
Sbjct: 155 TGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 212
Query: 188 NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN----SDAHV 243
           + +  S +G  ILA+ LD+TL+L D S G+ L+ Y GH  + +   C   N        +
Sbjct: 213 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWI 269
Query: 244 TGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
             GSED  +Y W+L    +V K + H+ VV
Sbjct: 270 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 299

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score =  148 bits (374), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 142/270 (52%), Gaps = 14/270 (5%)
Query: 13  VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
            L GH  AV + +F+ +G +  S   D+ I++W  + G   KT   H   + DV  ++D+
Sbjct: 18  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 73  SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
           + L+S   D+ +  WDVS+G+ ++  +GH + V    FN  S+++VS  +D+S+R WD +
Sbjct: 78  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 133 SHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVG---RELSDDLGQPV 187
           +     ++ + +  D V +V   +  + I+  S DG  R +D   G   + L DD   PV
Sbjct: 138 TGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 195
Query: 188 NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN----SDAHV 243
           + +  S +G  ILA+ LD+TL+L D S G+ L+ Y GH  + +   C   N        +
Sbjct: 196 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWI 252
Query: 244 TGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
             GSED  +Y W+L    +V K + H+ VV
Sbjct: 253 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 282

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score =  148 bits (374), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 142/270 (52%), Gaps = 14/270 (5%)
Query: 13  VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
            L GH  AV + +F+ +G +  S   D+ I++W  + G   KT   H   + DV  ++D+
Sbjct: 18  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 73  SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
           + L+S   D+ +  WDVS+G+ ++  +GH + V    FN  S+++VS  +D+S+R WD +
Sbjct: 78  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 133 SHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVG---RELSDDLGQPV 187
           +     ++ + +  D V +V   +  + I+  S DG  R +D   G   + L DD   PV
Sbjct: 138 TGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 195
Query: 188 NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN----SDAHV 243
           + +  S +G  ILA+ LD+TL+L D S G+ L+ Y GH  + +   C   N        +
Sbjct: 196 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWI 252
Query: 244 TGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
             GSED  +Y W+L    +V K + H+ VV
Sbjct: 253 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 282

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score =  148 bits (374), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 142/270 (52%), Gaps = 14/270 (5%)
Query: 13  VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
            L GH  AV + +F+ +G +  S   D+ I++W  + G   KT   H   + DV  ++D+
Sbjct: 19  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 78
Query: 73  SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
           + L+S   D+ +  WDVS+G+ ++  +GH + V    FN  S+++VS  +D+S+R WD +
Sbjct: 79  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 138
Query: 133 SHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVG---RELSDDLGQPV 187
           +     ++ + +  D V +V   +  + I+  S DG  R +D   G   + L DD   PV
Sbjct: 139 TGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 196
Query: 188 NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN----SDAHV 243
           + +  S +G  ILA+ LD+TL+L D S G+ L+ Y GH  + +   C   N        +
Sbjct: 197 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWI 253
Query: 244 TGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
             GSED  +Y W+L    +V K + H+ VV
Sbjct: 254 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 283

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 142/270 (52%), Gaps = 14/270 (5%)
Query: 13  VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
            L GH  AV + +F+ +G +  S   D+ I++W  + G   KT   H   + DV  ++D+
Sbjct: 14  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 73
Query: 73  SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
           + L+S   D+ +  WDVS+G+ ++  +GH + V    FN  S+++VS  +D+S+R WD +
Sbjct: 74  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 133
Query: 133 SHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVG---RELSDDLGQPV 187
           +     ++ + +  D V +V   +  + I+  S DG  R +D   G   + L DD   PV
Sbjct: 134 TGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 191
Query: 188 NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN----SDAHV 243
           + +  S +G  ILA+ LD+TL+L D S G+ L+ Y GH  + +   C   N        +
Sbjct: 192 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWI 248
Query: 244 TGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
             GSED  +Y W+L    +V K + H+ VV
Sbjct: 249 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 278

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 142/270 (52%), Gaps = 14/270 (5%)
Query: 13  VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
            L GH  AV + +F+ +G +  S   D+ I++W  + G   KT   H   + DV  ++D+
Sbjct: 23  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 82
Query: 73  SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
           + L+S   D+ +  WDVS+G+ ++  +GH + V    FN  S+++VS  +D+S+R WD +
Sbjct: 83  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 142
Query: 133 SHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVG---RELSDDLGQPV 187
           +     ++ + +  D V +V   +  + I+  S DG  R +D   G   + L DD   PV
Sbjct: 143 TGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 200
Query: 188 NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN----SDAHV 243
           + +  S +G  ILA+ LD+TL+L D S G+ L+ Y GH  + +   C   N        +
Sbjct: 201 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWI 257
Query: 244 TGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
             GSED  +Y W+L    +V K + H+ VV
Sbjct: 258 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 287

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 142/270 (52%), Gaps = 14/270 (5%)
Query: 13  VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
            L GH  AV + +F+ +G +  S   D+ I++W  + G   KT   H   + DV  ++D+
Sbjct: 17  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 76
Query: 73  SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
           + L+S   D+ +  WDVS+G+ ++  +GH + V    FN  S+++VS  +D+S+R WD +
Sbjct: 77  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 136
Query: 133 SHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVG---RELSDDLGQPV 187
           +     ++ + +  D V +V   +  + I+  S DG  R +D   G   + L DD   PV
Sbjct: 137 TGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 194
Query: 188 NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN----SDAHV 243
           + +  S +G  ILA+ LD+TL+L D S G+ L+ Y GH  + +   C   N        +
Sbjct: 195 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWI 251
Query: 244 TGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
             GSED  +Y W+L    +V K + H+ VV
Sbjct: 252 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 281

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 142/270 (52%), Gaps = 14/270 (5%)
Query: 13  VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
            L GH  AV + +F+ +G +  S   D+ I++W  + G   KT   H   + DV  ++D+
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 73  SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
           + L+S   D+ +  WDVS+G+ ++  +GH + V    FN  S+++VS  +D+S+R WD +
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 133 SHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVG---RELSDDLGQPV 187
           +     ++ + +  D V +V   +  + I+  S DG  R +D   G   + L DD   PV
Sbjct: 141 TGMC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 188 NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN----SDAHV 243
           + +  S +G  ILA+ LD+TL+L D S G+ L+ Y GH  + +   C   N        +
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWI 255
Query: 244 TGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
             GSED  +Y W+L    +V K + H+ VV
Sbjct: 256 VSGSEDNMVYIWNLQTKEIVQKLQGHTDVV 285

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score =  147 bits (372), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 142/270 (52%), Gaps = 14/270 (5%)
Query: 13  VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
            L GH  AV + +F+ +G +  S   D+ I++W  + G   KT   H   + DV  ++D+
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 73  SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
           + L+S   D+ +  WDVS+G+ ++  +GH + V    FN  S+++VS  +D+S+R WD +
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 133 SHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVG---RELSDDLGQPV 187
           +     ++ + +  D V +V   +  + I+  S DG  R +D   G   + L DD   PV
Sbjct: 141 TGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 188 NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN----SDAHV 243
           + +  S +G  ILA+ LD+TL+L D S G+ L+ Y GH  + +   C   N        +
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWI 255
Query: 244 TGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
             GSED  +Y W+L    +V K + H+ VV
Sbjct: 256 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 285

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score =  147 bits (372), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 142/270 (52%), Gaps = 14/270 (5%)
Query: 13  VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
            L GH  AV + +F+ +G +  S   D+ I++W  + G   KT   H   + DV  ++D+
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 73  SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
           + L+S   D+ +  WDVS+G+ ++  +GH + V    FN  S+++VS  +D+S+R WD +
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 133 SHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVG---RELSDDLGQPV 187
           +     ++ + +  D V +V   +  + I+  S DG  R +D   G   + L DD   PV
Sbjct: 141 TGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 188 NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN----SDAHV 243
           + +  S +G  ILA+ LD+TL+L D S G+ L+ Y GH  + +   C   N        +
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWI 255
Query: 244 TGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
             GSED  +Y W+L    +V K + H+ VV
Sbjct: 256 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 285

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score =  146 bits (369), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 84/270 (31%), Positives = 142/270 (52%), Gaps = 14/270 (5%)
Query: 13  VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
            L GH  AV + +F+ +G +  +   D+ I++W  + G   KT   H   + DV  ++D+
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 73  SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
           + L+S   D+ +  WDVS+G+ ++  +GH + V    FN  S+++VS  +D+S+R WD +
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 133 SHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVG---RELSDDLGQPV 187
           +     ++ + +  D V +V   +  + I+  S DG  R +D   G   + L DD   PV
Sbjct: 141 TGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 188 NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN----SDAHV 243
           + +  S +G  ILA+ LD+TL+L D S G+ L+ Y GH  + +   C   N        +
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWI 255
Query: 244 TGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
             GSED  +Y W+L    +V K + H+ VV
Sbjct: 256 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 285

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score =  145 bits (367), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 84/270 (31%), Positives = 141/270 (52%), Gaps = 14/270 (5%)
Query: 13  VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
            L GH  AV + +F+ +G +  S   D+ I++W  + G   KT   H   + DV  ++D+
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 73  SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
           + L+S   D+ +  WDVS+G+ ++  +GH + V    FN  S+++VS  +D+S+R WD +
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 133 SHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVG---RELSDDLGQPV 187
           +     ++ + +  D V +V   +  + I+  S DG  R +D   G   + L DD   PV
Sbjct: 141 TGMC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 188 NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN----SDAHV 243
           + +  S +G  ILA+ LD+ L+L D S G+ L+ Y GH  + +   C   N        +
Sbjct: 199 SFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWI 255
Query: 244 TGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
             GSED  +Y W+L    +V K + H+ VV
Sbjct: 256 VSGSEDNMVYIWNLQTKEIVQKLQGHTDVV 285

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 94.7 bits (234), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 113/244 (46%), Gaps = 9/244 (3%)
Query: 14  LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNS 73
           L GH G V +++     N  +S   DRT+++WN   G  I T   H   VR +H+     
Sbjct: 155 LVGHTGGVWSSQMRD--NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL--HEK 210
Query: 74  KLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRS 133
           +++S   D  +  WD+ TG+ +    GH + V  V+++     VVS  YD  ++ WD  +
Sbjct: 211 RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPET 268
Query: 134 HSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLGQPVNCISMS 193
            +   +  +    + V S+      ++ GS+D ++R +D+  G  +    G       M 
Sbjct: 269 ETC--LHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME 326
Query: 194 NDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIY 253
              N +++   DST+++ D  TG+ LQ  +G   K      CL  +   V   S+DG + 
Sbjct: 327 LKDNILVSGNADSTVKIWDIKTGQCLQTLQGP-NKHQSAVTCLQFNKNFVITSSDDGTVK 385
Query: 254 FWDL 257
            WDL
Sbjct: 386 LWDL 389

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 88/198 (44%), Gaps = 8/198 (4%)
Query: 73  SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
           ++++S   D  +  W   TG+ +R   GH   V + +  +  ++++S   D++L+ W+  
Sbjct: 130 NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDRTLKVWN-- 185
Query: 133 SHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLGQPVNCISM 192
           + + E I  +     +V  + L +  ++ GS D T+R +DI  G+ L   +G       +
Sbjct: 186 AETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV 245
Query: 193 SNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYI 252
             DG  +++   D  +++ D  T   L   +GH  + +     L     HV  GS D  I
Sbjct: 246 QYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS----LQFDGIHVVSGSLDTSI 301
Query: 253 YFWDLVDASVVAKFKAHS 270
             WD+   + +     H 
Sbjct: 302 RVWDVETGNCIHTLTGHQ 319

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 4/116 (3%)
Query: 159 IIGGSVDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGEL 218
           I+ GS D T++ +    G+ L   +G      S     N I++   D TL++ +  TGE 
Sbjct: 132 IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGEC 191
Query: 219 LQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVK 274
           +    GH      T  C+   +  V  GS D  +  WD+     +     H   V+
Sbjct: 192 IHTLYGHT----STVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR 243

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 112/248 (45%), Gaps = 13/248 (5%)
Query: 13  VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
            L GH  +V    F+ DG    S   D+T++LWN   G  ++T   H   VR V  + D 
Sbjct: 175 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDG 233
Query: 73  SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
             + S   D+ +  W+   G++++   GH S VN V F      + SA  D++++ W+  
Sbjct: 234 QTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-- 290
Query: 133 SHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVGRELSDDLGQ--PVN 188
             + + +Q +     SV  V  +     I   S D TV+ ++ R G+ L    G    V 
Sbjct: 291 -RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVW 348
Query: 189 CISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSE 248
            ++ S DG  I ++  D T++L +R+ G+LLQ   GH   S       +     +   S+
Sbjct: 349 GVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGH--SSSVRGVAFSPDGQTIASASD 405
Query: 249 DGYIYFWD 256
           D  +  W+
Sbjct: 406 DKTVKLWN 413

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 118/274 (43%), Gaps = 28/274 (10%)
Query: 5   DLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVR 64
           D  RT    LKGH  +V    F+  G    SC  D TI+LW+      I+T   H   V 
Sbjct: 141 DFERT----LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVS 196
Query: 65  DVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQ 124
            V +  +   ++S   D+ I  W+V TG  ++ F GH   V  V+ N+  +++ S   DQ
Sbjct: 197 SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ 256
Query: 125 SLRAW-----DCRSHSTEPIQII-------DSFQDSVMSVCLTKTE--------IIGGSV 164
           ++R W     +C++   E   ++       +S   S+     ++T+        ++ GS 
Sbjct: 257 TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 316
Query: 165 DGTVRTFDIRVGRELSDDLGQP--VNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEY 222
           D T++ +D+  G  L   +G    V  +   + G  IL+   D TLR+ D      ++  
Sbjct: 317 DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 376
Query: 223 KGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWD 256
             H  + F T      +  +V  GS D  +  W+
Sbjct: 377 NAH--EHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 125/298 (41%), Gaps = 39/298 (13%)
Query: 1    MSVSDLPRTEA-NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLW-----NPHRGIHIK 54
            + + DL + E  N + GH  +V   RF+ D     SC  D T+RLW     N  + I++K
Sbjct: 725  LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVK 784
Query: 55   T-YKSHGREVRDVHV-------TADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVN 106
              + S      DV V       +AD  K+I    ++ + +   ++G +     GH S + 
Sbjct: 785  RFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQ 844
Query: 107  AVKFNEYSSVVVSA---------GYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT 157
               F+ Y  + V A           D  L+  DCR H         S+   VM      +
Sbjct: 845  YCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHL--------SWVHGVM-FSPDGS 895
Query: 158  EIIGGSVDGTVRTFDI-RVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTG 216
              +  S D T+R ++  +V +  +  L Q ++ +   N+   +LA      L+L+   TG
Sbjct: 896  SFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENE-TMVLAVDNIRGLQLIAGKTG 954
Query: 217  ELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVK 274
            ++      ++ ++  + CCL+    +V  G EDG I   +L +  V +    H   V+
Sbjct: 955  QI-----DYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVR 1007

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 125/298 (41%), Gaps = 39/298 (13%)
Query: 1    MSVSDLPRTEA-NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLW-----NPHRGIHIK 54
            + + DL + E  N + GH  +V   RF+ D     SC  D T+RLW     N  + I++K
Sbjct: 732  LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVK 791
Query: 55   T-YKSHGREVRDVHV-------TADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVN 106
              + S      DV V       +AD  K+I    ++ + +   ++G +     GH S + 
Sbjct: 792  RFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQ 851
Query: 107  AVKFNEYSSVVVSA---------GYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT 157
               F+ Y  + V A           D  L+  DCR H         S+   VM      +
Sbjct: 852  YCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHL--------SWVHGVM-FSPDGS 902
Query: 158  EIIGGSVDGTVRTFDI-RVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTG 216
              +  S D T+R ++  +V +  +  L Q ++ +   N+   +LA      L+L+   TG
Sbjct: 903  SFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENE-TMVLAVDNIRGLQLIAGKTG 961
Query: 217  ELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVK 274
            ++      ++ ++  + CCL+    +V  G EDG I   +L +  V +    H   V+
Sbjct: 962  QI-----DYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVR 1014

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 106/212 (50%), Gaps = 13/212 (6%)
Query: 14  LKGHEGAVLA-ARFNGDGNYCLSCGKDRTIRLW-----NPHRGIHIKTYKSHGREVRDVH 67
           L+GH G V + A   G  N  LS  +D+T+  W     +   G+ ++++K H   V+D  
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 68  VTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLR 127
           +TAD +  +S   D+ +  WDV+TG   ++F GH+S+V +V  ++ +S+++S   D++++
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 128 AWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE-----IIGGSVDGTVRTFDIRVGRELSDD 182
            W  +      +   + +   V  V   K +     II    D  V+ +++   +  +D 
Sbjct: 133 VWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 183 LGQ--PVNCISMSNDGNCILASCLDSTLRLLD 212
           +G    +N ++ S DG  I ++  D  + L +
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 106/212 (50%), Gaps = 13/212 (6%)
Query: 14  LKGHEGAVLA-ARFNGDGNYCLSCGKDRTIRLW-----NPHRGIHIKTYKSHGREVRDVH 67
           L+GH G V + A   G  N  LS  +D+T+  W     +   G+ ++++K H   V+D  
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 68  VTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLR 127
           +TAD +  +S   D+ +  WDV+TG   ++F GH+S+V +V  ++ +S+++S   D++++
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 128 AWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE-----IIGGSVDGTVRTFDIRVGRELSDD 182
            W  +      +   + +   V  V   K +     II    D  V+ +++   +  +D 
Sbjct: 133 VWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 183 LGQ--PVNCISMSNDGNCILASCLDSTLRLLD 212
           +G    +N ++ S DG  I ++  D  + L +
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 106/212 (50%), Gaps = 13/212 (6%)
Query: 14  LKGHEGAVLA-ARFNGDGNYCLSCGKDRTIRLW-----NPHRGIHIKTYKSHGREVRDVH 67
           L+GH G V + A   G  N  LS  +D+T+  W     +   G+ ++++K H   V+D  
Sbjct: 7   LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 66
Query: 68  VTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLR 127
           +TAD +  +S   D+ +  WDV+TG   ++F GH+S+V +V  ++ +S+++S   D++++
Sbjct: 67  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 126
Query: 128 AWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE-----IIGGSVDGTVRTFDIRVGRELSDD 182
            W  +      +   + +   V  V   K +     II    D  V+ +++   +  +D 
Sbjct: 127 VWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 186
Query: 183 LGQ--PVNCISMSNDGNCILASCLDSTLRLLD 212
           +G    +N ++ S DG  I ++  D  + L +
Sbjct: 187 IGHNSNINTLTASPDGTLIASAGKDGEIMLWN 218

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 106/212 (50%), Gaps = 13/212 (6%)
Query: 14  LKGHEGAVLA-ARFNGDGNYCLSCGKDRTIRLW-----NPHRGIHIKTYKSHGREVRDVH 67
           L+GH G V + A   G  N  LS  +D+T+  W     +   G+ ++++K H   V+D  
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 68  VTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLR 127
           +TAD +  +S   D+ +  WDV+TG   ++F GH+S+V +V  ++ +S+++S   D++++
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 128 AWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE-----IIGGSVDGTVRTFDIRVGRELSDD 182
            W  +      +   + +   V  V   K +     II    D  V+ +++   +  +D 
Sbjct: 133 VWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 183 LGQ--PVNCISMSNDGNCILASCLDSTLRLLD 212
           +G    +N ++ S DG  I ++  D  + L +
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 106/212 (50%), Gaps = 13/212 (6%)
Query: 14  LKGHEGAVLA-ARFNGDGNYCLSCGKDRTIRLW-----NPHRGIHIKTYKSHGREVRDVH 67
           L+GH G V + A   G  N  LS  +D+T+  W     +   G+ ++++K H   V+D  
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 68  VTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLR 127
           +TAD +  +S   D+ +  WDV+TG   ++F GH+S+V +V  ++ +S+++S   D++++
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 128 AWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE-----IIGGSVDGTVRTFDIRVGRELSDD 182
            W  +      +   + +   V  V   K +     II    D  V+ +++   +  +D 
Sbjct: 133 VWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 183 LGQ--PVNCISMSNDGNCILASCLDSTLRLLD 212
           +G    +N ++ S DG  I ++  D  + L +
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 105/212 (49%), Gaps = 13/212 (6%)
Query: 14  LKGHEGAVLA-ARFNGDGNYCLSCGKDRTIRLW-----NPHRGIHIKTYKSHGREVRDVH 67
           L+GH G V + A   G  N  LS  +D+T+  W     +   G+ ++++K H   V+D  
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 68  VTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLR 127
           +TAD +  +S   D+ +  WDV+TG   ++F GH+S+V +V  ++ +S ++S   D++++
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIK 132
Query: 128 AWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE-----IIGGSVDGTVRTFDIRVGRELSDD 182
            W  +      +   + +   V  V   K +     II    D  V+ +++   +  +D 
Sbjct: 133 VWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADF 192
Query: 183 LGQ--PVNCISMSNDGNCILASCLDSTLRLLD 212
           +G    +N ++ S DG  I ++  D  + L +
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIXLWN 224

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 119/261 (45%), Gaps = 28/261 (10%)
Query: 13  VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
           +L GH G+VL  ++  D    ++   D T+R+W+ + G  + T   H   V  +H+  +N
Sbjct: 168 ILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV--LHLRFNN 223
Query: 73  SKLISCGGDRQIFYWDVSTGRVI---RKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAW 129
             +++C  DR I  WD+++   I   R   GH + VN V F++    +VSA  D++++ W
Sbjct: 224 GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVW 281
Query: 130 DCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLG--QPV 187
           +  + + E ++ ++  +  +  +      ++ GS D T+R +DI  G  L    G  + V
Sbjct: 282 N--TSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELV 339
Query: 188 NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHIC---------KSFKTDCCLTN 238
            CI   N    I++   D  +++ D       +   G +C         + F+    L  
Sbjct: 340 RCIRFDNKR--IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFR----LQF 393
Query: 239 SDAHVTGGSEDGYIYFWDLVD 259
            +  +   S D  I  WD ++
Sbjct: 394 DEFQIVSSSHDDTILIWDFLN 414

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 99/225 (44%), Gaps = 17/225 (7%)
Query: 14  LKGHEGAVLA---ARFNGDGNYCLSCGKDRTIRLWNPHR---------GIHIKTYKSHGR 61
           L GH G V +    +        +S  +D+T+  W P+          G+  +  + H  
Sbjct: 9   LTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSA 68
Query: 62  EVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAG 121
            V DV ++ + +  +S   D  +  W++  G+   KF GH  +V +V F+  +  +VS G
Sbjct: 69  FVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGG 128
Query: 122 YDQSLRAWDCRS---HSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRE 178
            D +LR W+ +    H+       D       S  L    I+ G  D  V+ +D+  GR 
Sbjct: 129 RDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRL 188
Query: 179 LSDDLGQP--VNCISMSNDGNCILASCLDSTLRLLDRSTGELLQE 221
           ++D  G    V  +++S DG+   +S  D   RL D + GE L E
Sbjct: 189 VTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSE 233

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 103/222 (46%), Gaps = 26/222 (11%)
Query: 73  SKLISCGGDRQIFYW---------DVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYD 123
           +K++S   D+ +  W         + S G   R+  GH + V+ V  +   +  VSA +D
Sbjct: 29  TKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWD 88
Query: 124 QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIR------V 175
            SLR W+ ++   +  + +   +D V+SV  +    +I+ G  D  +R ++++      +
Sbjct: 89  HSLRLWNLQNGQCQ-YKFLGHTKD-VLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTL 146
Query: 176 GRELSDDLGQPVNCI--SMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTD 233
            R    D    V+C+  S S D   I++   D+ +++ D +TG L+ + KGH   ++ T 
Sbjct: 147 SRGAHTDW---VSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHT--NYVTS 201
Query: 234 CCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKL 275
             ++   +      +DG    WDL     +++  A + + ++
Sbjct: 202 VTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQI 243

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 90/200 (45%), Gaps = 6/200 (3%)
Query: 17  HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVR--DVHVTADNSK 74
           H   + A  F       L+   D T  LW+   G  ++++  HG +V   D+  +   + 
Sbjct: 153 HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212
Query: 75  LISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSH 134
            +S G D++   WD+ +G+ ++ F  HES+VN+V++        S   D + R +D R+ 
Sbjct: 213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD 272
Query: 135 STEPIQIIDS--FQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLGQP--VNCI 190
               I   +S  F  S +   L+   +  G  D T+  +D+  G  +S   G    V+ +
Sbjct: 273 REVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTL 332
Query: 191 SMSNDGNCILASCLDSTLRL 210
            +S DG    +   D TLR+
Sbjct: 333 RVSPDGTAFCSGSWDHTLRV 352

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/295 (22%), Positives = 120/295 (40%), Gaps = 48/295 (16%)
Query: 17  HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG------------------IHIKTYKS 58
           H   V   +F+ DG Y L+ G ++T +++    G                  ++  +  S
Sbjct: 63  HTSVVCCVKFSNDGEY-LATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 121
Query: 59  HGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVV 118
               +R V  + D   L +   DR I  WD+   +++   +GHE ++ ++ +      +V
Sbjct: 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV 181
Query: 119 SAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE---IIGGSVDGTVRTFDIRV 175
           S   D+++R WD R   T    +  S +D V +V ++  +   I  GS+D  VR +D   
Sbjct: 182 SGSGDRTVRIWDLR---TGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET 238
Query: 176 G---------RELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLD------------RS 214
           G          E        V  +  + DG  +++  LD +++L +             +
Sbjct: 239 GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 298
Query: 215 TGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAH 269
           +G     Y GH  K F      T +D ++  GS+D  + FWD    + +   + H
Sbjct: 299 SGTCEVTYIGH--KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH 351

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 84/172 (48%), Gaps = 9/172 (5%)
Query: 14  LKGHEGAVLAARF-NGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKS-HGREVRDVHVTAD 71
           L+ H  +V  A+  +   N  L+   D+TI+LW   +   IKT+   H   VR + V  D
Sbjct: 138 LQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK--VIKTFSGIHNDVVRHLAV-VD 194
Query: 72  NSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDC 131
           +   ISC  D  I   D  TG V+R + GHES V  +K       +VS G D+++R W  
Sbjct: 195 DGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGD-IVSCGEDRTVRIWSK 253
Query: 132 RSHSTEPIQIIDSFQDSVMSV-CLTKTEIIGGSVDGTVRTFDIRVGRELSDD 182
            + S +  Q+I     S+ SV C +  +II GS D  VR F     R  S+D
Sbjct: 254 ENGSLK--QVITLPAISIWSVDCXSNGDIIVGSSDNLVRIFSQEKSRWASED 303

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 17/150 (11%)
Query: 5   DLPRTEANVLKGHEGAV------LAARFNGDGNYCLSCGKDRTIRLW-------NPHRGI 51
           D+   +  +L+GH   V       + + N D    +S  +D+T+ +W       N + GI
Sbjct: 8   DIQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGI 67
Query: 52  HIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFN 111
             K    H   V D+ ++ +N   IS   D+ +  WD+ TG   ++F GH+SEV +V F+
Sbjct: 68  PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFS 127
Query: 112 EYSSVVVSAGYDQSLRAW----DCRSHSTE 137
             +  ++SAG ++ ++ W    +C+  S E
Sbjct: 128 PDNRQILSAGAEREIKLWNILGECKFSSAE 157

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/157 (21%), Positives = 68/157 (43%), Gaps = 15/157 (9%)
Query: 32  YCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVST 91
           Y  S G D  +++WN +  I   T+K+H   V  + ++ +   + + G D+++  WD+  
Sbjct: 186 YFASVGWDGRLKVWNTNFQIRY-TFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN 244
Query: 92  GRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDS------- 144
               ++     S +N + FN      V+ G DQ ++ ++  + S  P+  I++       
Sbjct: 245 LTYPQREFDAGSTINQIAFNPKLQ-WVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAE 303
Query: 145 ------FQDSVMSVCLTKTEIIGGSVDGTVRTFDIRV 175
                  Q + ++      ++  G  DG +RTF    
Sbjct: 304 GQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 64.3 bits (155), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 101/224 (45%), Gaps = 13/224 (5%)
Query: 13  VLKGHEGAVLA-ARFNGDGNYCLSCGKDRTIRLWNPHR-----GIHIKTYKSHGREVRDV 66
            LKGH G V   A      +  LS  +D+TI +W   R     GI  +  + H   V DV
Sbjct: 10  TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 69
Query: 67  HVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSL 126
            +++D    +S   D  +  WD++TG   R+F GH  +V +V F+  +  +VS   D+++
Sbjct: 70  VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 129
Query: 127 RAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE----IIGGSVDGTVRTFDIRVGRELSDD 182
           + W+        +Q  +S  + V  V  +       I+    D  V+ +++   +  ++ 
Sbjct: 130 KLWNTLGVCKYTVQ-DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH 188
Query: 183 LGQP--VNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKG 224
           +G    +N +++S DG+   +   D    L D + G+ L    G
Sbjct: 189 IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 232

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 64.3 bits (155), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 101/224 (45%), Gaps = 13/224 (5%)
Query: 13  VLKGHEGAVLA-ARFNGDGNYCLSCGKDRTIRLWNPHR-----GIHIKTYKSHGREVRDV 66
            LKGH G V   A      +  LS  +D+TI +W   R     GI  +  + H   V DV
Sbjct: 33  TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 92
Query: 67  HVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSL 126
            +++D    +S   D  +  WD++TG   R+F GH  +V +V F+  +  +VS   D+++
Sbjct: 93  VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 152
Query: 127 RAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE----IIGGSVDGTVRTFDIRVGRELSDD 182
           + W+        +Q  +S  + V  V  +       I+    D  V+ +++   +  ++ 
Sbjct: 153 KLWNTLGVCKYTVQ-DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH 211
Query: 183 LGQP--VNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKG 224
           +G    +N +++S DG+   +   D    L D + G+ L    G
Sbjct: 212 IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 255

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 63.9 bits (154), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 112/286 (39%), Gaps = 35/286 (12%)
Query: 10  EANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVT 69
           +   L+GH  +V+      + NY ++   D+ IR+++      +     H   V  +   
Sbjct: 113 QRTTLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY- 170
Query: 70  ADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSV--VVSAGYDQSLR 127
           A    L+S   DR +  WD+  G     F GH S V  +   EY ++  +V+   D +L 
Sbjct: 171 AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 230
Query: 128 AWDCRSHSTEP---------------------IQIIDSFQDSVMSVCLTKTEIIGGSVDG 166
            W     S+ P                     + ++     SV +V      ++ GS D 
Sbjct: 231 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDN 290
Query: 167 TVRTFDIRVGR---ELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYK 223
           T+  +D+   +    LS    +  + I       CI AS +D+T+R+ D   GEL+   +
Sbjct: 291 TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS-MDTTIRIWDLENGELMYTLQ 349
Query: 224 GHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAH 269
           GH          L  SD  +   + DG I  WD  D S   KF  H
Sbjct: 350 GHTALV----GLLRLSDKFLVSAAADGSIRGWDANDYS--RKFSYH 389

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 116/252 (46%), Gaps = 18/252 (7%)
Query: 29  DGNYCLSCGKDRTIRLWNPHR-----GIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQ 83
           + +  +S  +D++I LW   +     G+  +    H   V DV +++D    +S   D +
Sbjct: 394 NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453
Query: 84  IFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPI-QII 142
           +  WD++ G   R+F GH  +V +V F+  +  +VSA  D++++ W+        I +  
Sbjct: 454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGG 513
Query: 143 DSFQDSVMSVCLT----KTEIIGGSVDGTVRTFDI---RVGRELSDDLGQPVNCISMSND 195
           +  +D V  V  +    +  I+  S D TV+ +++   ++   L+   G  V+ +++S D
Sbjct: 514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGY-VSTVAVSPD 572
Query: 196 GNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFW 255
           G+   +   D  + L D + G+ L   + +   S     C + +   +   +E G I  W
Sbjct: 573 GSLCASGGKDGVVLLWDLAEGKKLYSLEAN---SVIHALCFSPNRYWLCAATEHG-IKIW 628
Query: 256 DLVDASVVAKFK 267
           DL   S+V   K
Sbjct: 629 DLESKSIVEDLK 640

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 110/286 (38%), Gaps = 35/286 (12%)
Query: 10  EANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVT 69
           +   L+GH  +V+      + NY ++   D+ IR+++      +     H   V  +   
Sbjct: 113 QRTTLRGHXTSVITC-LQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY- 170
Query: 70  ADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSV--VVSAGYDQSLR 127
           A    L+S   DR +  WD+  G     F GH S V  +   EY ++  +V+   D +L 
Sbjct: 171 AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 230
Query: 128 AWDCRSHSTEP---------------------IQIIDSFQDSVMSVCLTKTEIIGGSVDG 166
            W     S+ P                     + ++     SV +V      ++ GS D 
Sbjct: 231 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDN 290
Query: 167 TVRTFDIRVGR---ELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYK 223
           T+  +D+   +    LS    +  + I       CI AS  D+T+R+ D   GEL    +
Sbjct: 291 TLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASX-DTTIRIWDLENGELXYTLQ 349
Query: 224 GHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAH 269
           GH          L  SD  +   + DG I  WD  D S   KF  H
Sbjct: 350 GHTALV----GLLRLSDKFLVSAAADGSIRGWDANDYS--RKFSYH 389

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 91/220 (41%), Gaps = 14/220 (6%)
Query: 2   SVSDLPRTEANV-----LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTY 56
           S+ +L   E NV     L GH G +   RF  D     S G D T  LW+   G    T+
Sbjct: 133 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTF 191
Query: 57  KSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSV 116
             H  +V  + +  D    +S   D     WDV  G   + F GHES++NA+ F    + 
Sbjct: 192 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 251
Query: 117 VVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE--IIGGSVDGTVRTFDI- 173
             +   D + R +D R+         D+    + SV  +K+   ++ G  D     +D  
Sbjct: 252 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 311
Query: 174 ---RVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRL 210
              R G     D    V+C+ +++DG  +     DS L++
Sbjct: 312 KADRAGVLAGHD--NRVSCLGVTDDGMAVATGSWDSFLKI 349

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/275 (21%), Positives = 103/275 (37%), Gaps = 17/275 (6%)
Query: 13  VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVT--- 69
            L+GH   + A  +  D    +S  +D  + +W+ +      T K H   +R   V    
Sbjct: 61  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSY-----TTNKVHAIPLRSSWVMTCA 115
Query: 70  -ADNSKLISCGG-DRQIFYWDVSTG----RVIRKFRGHESEVNAVKFNEYSSVVVSAGYD 123
            A +   ++CGG D     +++ T     RV R+  GH   ++  +F + + +V S+G D
Sbjct: 116 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-D 174
Query: 124 QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVG--RELSD 181
            +   WD  +          +     +S+       + G+ D + + +D+R G  R+   
Sbjct: 175 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT 234
Query: 182 DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDA 241
                +N I    +GN       D+T RL D    + L  Y         T    + S  
Sbjct: 235 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 294
Query: 242 HVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL 276
            +  G +D     WD + A        H   V  L
Sbjct: 295 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL 329

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 91/220 (41%), Gaps = 14/220 (6%)
Query: 2   SVSDLPRTEANV-----LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTY 56
           S+ +L   E NV     L GH G +   RF  D     S G D T  LW+   G    T+
Sbjct: 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTF 180
Query: 57  KSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSV 116
             H  +V  + +  D    +S   D     WDV  G   + F GHES++NA+ F    + 
Sbjct: 181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 240
Query: 117 VVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE--IIGGSVDGTVRTFDI- 173
             +   D + R +D R+         D+    + SV  +K+   ++ G  D     +D  
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 174 ---RVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRL 210
              R G     D    V+C+ +++DG  +     DS L++
Sbjct: 301 KADRAGVLAGHD--NRVSCLGVTDDGMAVATGSWDSFLKI 338

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 60/275 (21%), Positives = 103/275 (37%), Gaps = 17/275 (6%)
Query: 13  VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVT--- 69
            L+GH   + A  +  D    LS  +D  + +W+ +      T K H   +R   V    
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSY-----TTNKVHAIPLRSSWVMTCA 104
Query: 70  -ADNSKLISCGG-DRQIFYWDVSTG----RVIRKFRGHESEVNAVKFNEYSSVVVSAGYD 123
            A +   ++CGG D     +++ T     RV R+  GH   ++  +F + + +V S+G D
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-D 163
Query: 124 QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVG--RELSD 181
            +   WD  +          +     +S+       + G+ D + + +D+R G  R+   
Sbjct: 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT 223
Query: 182 DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDA 241
                +N I    +GN       D+T RL D    + L  Y         T    + S  
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 242 HVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL 276
            +  G +D     WD + A        H   V  L
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL 318

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 91/220 (41%), Gaps = 14/220 (6%)
Query: 2   SVSDLPRTEANV-----LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTY 56
           S+ +L   E NV     L GH G +   RF  D     S G D T  LW+   G    T+
Sbjct: 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTF 180
Query: 57  KSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSV 116
             H  +V  + +  D    +S   D     WDV  G   + F GHES++NA+ F    + 
Sbjct: 181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 240
Query: 117 VVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE--IIGGSVDGTVRTFDI- 173
             +   D + R +D R+         D+    + SV  +K+   ++ G  D     +D  
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 174 ---RVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRL 210
              R G     D    V+C+ +++DG  +     DS L++
Sbjct: 301 KADRAGVLAGHD--NRVSCLGVTDDGMAVATGSWDSFLKI 338

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 60/275 (21%), Positives = 103/275 (37%), Gaps = 17/275 (6%)
Query: 13  VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVT--- 69
            L+GH   + A  +  D    LS  +D  + +W+ +      T K H   +R   V    
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSY-----TTNKVHAIPLRSSWVMTCA 104
Query: 70  -ADNSKLISCGG-DRQIFYWDVSTG----RVIRKFRGHESEVNAVKFNEYSSVVVSAGYD 123
            A +   ++CGG D     +++ T     RV R+  GH   ++  +F + + +V S+G D
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-D 163
Query: 124 QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVG--RELSD 181
            +   WD  +          +     +S+       + G+ D + + +D+R G  R+   
Sbjct: 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT 223
Query: 182 DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDA 241
                +N I    +GN       D+T RL D    + L  Y         T    + S  
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 242 HVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL 276
            +  G +D     WD + A        H   V  L
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL 318

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 91/220 (41%), Gaps = 14/220 (6%)
Query: 2   SVSDLPRTEANV-----LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTY 56
           S+ +L   E NV     L GH G +   RF  D     S G D T  LW+   G    T+
Sbjct: 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTF 180
Query: 57  KSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSV 116
             H  +V  + +  D    +S   D     WDV  G   + F GHES++NA+ F    + 
Sbjct: 181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 240
Query: 117 VVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE--IIGGSVDGTVRTFDI- 173
             +   D + R +D R+         D+    + SV  +K+   ++ G  D     +D  
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 174 ---RVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRL 210
              R G     D    V+C+ +++DG  +     DS L++
Sbjct: 301 KADRAGVLAGHD--NRVSCLGVTDDGMAVATGSWDSFLKI 338

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/275 (21%), Positives = 103/275 (37%), Gaps = 17/275 (6%)
Query: 13  VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVT--- 69
            L+GH   + A  +  D    +S  +D  + +W+ +      T K H   +R   V    
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSY-----TTNKVHAIPLRSSWVMTCA 104
Query: 70  -ADNSKLISCGG-DRQIFYWDVSTG----RVIRKFRGHESEVNAVKFNEYSSVVVSAGYD 123
            A +   ++CGG D     +++ T     RV R+  GH   ++  +F + + +V S+G D
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-D 163
Query: 124 QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVG--RELSD 181
            +   WD  +          +     +S+       + G+ D + + +D+R G  R+   
Sbjct: 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT 223
Query: 182 DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDA 241
                +N I    +GN       D+T RL D    + L  Y         T    + S  
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 242 HVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL 276
            +  G +D     WD + A        H   V  L
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL 318

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 91/220 (41%), Gaps = 14/220 (6%)
Query: 2   SVSDLPRTEANV-----LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTY 56
           S+ +L   E NV     L GH G +   RF  D     S G D T  LW+   G    T+
Sbjct: 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTF 180
Query: 57  KSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSV 116
             H  +V  + +  D    +S   D     WDV  G   + F GHES++NA+ F    + 
Sbjct: 181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 240
Query: 117 VVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE--IIGGSVDGTVRTFDI- 173
             +   D + R +D R+         D+    + SV  +K+   ++ G  D     +D  
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 174 ---RVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRL 210
              R G     D    V+C+ +++DG  +     DS L++
Sbjct: 301 KADRAGVLAGHD--NRVSCLGVTDDGMAVATGSWDSFLKI 338

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/275 (21%), Positives = 103/275 (37%), Gaps = 17/275 (6%)
Query: 13  VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVT--- 69
            L+GH   + A  +  D    +S  +D  + +W+ +      T K H   +R   V    
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSY-----TTNKVHAIPLRSSWVMTCA 104
Query: 70  -ADNSKLISCGG-DRQIFYWDVSTG----RVIRKFRGHESEVNAVKFNEYSSVVVSAGYD 123
            A +   ++CGG D     +++ T     RV R+  GH   ++  +F + + +V S+G D
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-D 163
Query: 124 QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVG--RELSD 181
            +   WD  +          +     +S+       + G+ D + + +D+R G  R+   
Sbjct: 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT 223
Query: 182 DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDA 241
                +N I    +GN       D+T RL D    + L  Y         T    + S  
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 242 HVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL 276
            +  G +D     WD + A        H   V  L
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL 318

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 97/217 (44%), Gaps = 17/217 (7%)
Query: 12  NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI---HIKTYKSHGREVRDVHV 68
           NVL  H   +++ ++N DG + +S   +    LWN   G    H +  ++ G  +   + 
Sbjct: 143 NVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENH 202
Query: 69  TADNS-----------KLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVV 117
           + D S           K +  G    IF + ++      K  GH   ++ ++FN+ + ++
Sbjct: 203 SGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLL 262
Query: 118 VSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGR 177
           +SA  D +LR W   + +++      S Q  V +  +   ++I  S+DG+VR + ++   
Sbjct: 263 LSASDDGTLRIWHGGNGNSQNCFYGHS-QSIVSASWVGDDKVISCSMDGSVRLWSLKQNT 321
Query: 178 ELSDDL--GQPVNCISMSNDGNCILASCLDSTLRLLD 212
            L+  +  G P+    +S DG     + +D  + + D
Sbjct: 322 LLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYD 358

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 106/247 (42%), Gaps = 30/247 (12%)
Query: 14  LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNS 73
           L GHE  +   ++N +G+   SC KD +  +W    G  + T   H   +  + V     
Sbjct: 28  LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK 87
Query: 74  KLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKF----NEYSSVVVSAGYDQ-SLRA 128
             ++   D  I  WDVS G+ +  ++     V  V+F    N + +++ +   +  S+  
Sbjct: 88  YCVTGSADYSIKLWDVSNGQCVATWKS-PVPVKRVEFSPCGNYFLAILDNVMKNPGSINI 146
Query: 129 W----DCRSH-----STEPIQII---DSFQDSVMSVCLTKTE-IIGGSVDGTVRTFDIRV 175
           +    D  +H     S EPI  I   +    + ++   TK + II G  DG +  +D+  
Sbjct: 147 YEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN 206
Query: 176 GRELSDDLG---QPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKT 232
             E  D +    + ++ +  S D    + S  D+   L+D ST ++L++Y        +T
Sbjct: 207 NYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKY--------ET 258
Query: 233 DCCLTNS 239
           DC L  +
Sbjct: 259 DCPLNTA 265

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 111/276 (40%), Gaps = 28/276 (10%)
Query: 13  VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
            L+GH G V +  +  + N+ +S  +D  + +WN          K H   V +    A N
Sbjct: 61  TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAF-APN 119
Query: 73  SKLISCGG-DRQIFYWDVST----------GRVIRKFRGHESEVNAVKFNEYSSVVVSAG 121
            + ++CGG D     +++S+           RV+   +G+ S    V   E  + +++  
Sbjct: 120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQE--TRLITGS 177
Query: 122 YDQSLRAWDCRSHSTEPI---QIIDSFQDSVMSV---CLTKTEIIGGSVDGTVRTFDIRV 175
            DQ+   WD  +     I   +        V+S+    L     I GS D TVR +D+R+
Sbjct: 178 GDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRI 237
Query: 176 -GRELSDDLGQP--VNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKT 232
             R +    G    +N +    DG        D T RL D  TG  LQ Y     ++   
Sbjct: 238 TSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNE 297
Query: 233 DCCLTNSDAHVTG-----GSEDGYIYFWDLVDASVV 263
              +T+    ++G     G  +G  Y WD + A +V
Sbjct: 298 LPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMV 333

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 83/184 (45%), Gaps = 18/184 (9%)
Query: 14  LKGHEGAVLAARFNGDGN-YCLSCGKDRTIRLWN------PHRGIHIKT-YKSHGREVRD 65
           L+GH+       +N + N Y LS   D TI LW+       HR I  K  +  H   V D
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 236
Query: 66  VHVTADNSKLI-SCGGDRQIFYWDV---STGRVIRKFRGHESEVNAVKFNEYSSVVVSAG 121
           V     +  L  S   D+++  WD    +T +       H +EVN + FN YS  +++ G
Sbjct: 237 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 296
Query: 122 -YDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT---KTEIIGGSVDGTVRTFDI-RVG 176
             D+++  WD R+   + +   +S +D +  V  +   +T +     D  +  +D+ ++G
Sbjct: 297 SADKTVALWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 355
Query: 177 RELS 180
            E S
Sbjct: 356 EEQS 359

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 83/184 (45%), Gaps = 18/184 (9%)
Query: 14  LKGHEGAVLAARFNGDGN-YCLSCGKDRTIRLWN------PHRGIHIKT-YKSHGREVRD 65
           L+GH+       +N + N Y LS   D TI LW+       HR I  K  +  H   V D
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 238
Query: 66  VHVTADNSKLI-SCGGDRQIFYWDV---STGRVIRKFRGHESEVNAVKFNEYSSVVVSAG 121
           V     +  L  S   D+++  WD    +T +       H +EVN + FN YS  +++ G
Sbjct: 239 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 298
Query: 122 -YDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT---KTEIIGGSVDGTVRTFDI-RVG 176
             D+++  WD R+   + +   +S +D +  V  +   +T +     D  +  +D+ ++G
Sbjct: 299 SADKTVALWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 357
Query: 177 RELS 180
            E S
Sbjct: 358 EEQS 361

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 83/184 (45%), Gaps = 18/184 (9%)
Query: 14  LKGHEGAVLAARFNGDGN-YCLSCGKDRTIRLWN------PHRGIHIKT-YKSHGREVRD 65
           L+GH+       +N + N Y LS   D TI LW+       HR I  K  +  H   V D
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 240
Query: 66  VHVTADNSKLI-SCGGDRQIFYWDV---STGRVIRKFRGHESEVNAVKFNEYSSVVVSAG 121
           V     +  L  S   D+++  WD    +T +       H +EVN + FN YS  +++ G
Sbjct: 241 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 300
Query: 122 -YDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT---KTEIIGGSVDGTVRTFDI-RVG 176
             D+++  WD R+   + +   +S +D +  V  +   +T +     D  +  +D+ ++G
Sbjct: 301 SADKTVALWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 359
Query: 177 RELS 180
            E S
Sbjct: 360 EEQS 363

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/193 (18%), Positives = 82/193 (42%), Gaps = 10/193 (5%)
Query: 92  GRVIRKFRGHESEVNAVKF----NEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQD 147
           G + ++ + H+  + +V +     E S  VV+   D  ++ W  R    +    ++  Q 
Sbjct: 22  GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQL 81
Query: 148 SVMSVCLTKTEIIGGS--VDGTVRTFDIRVGRELSDDLGQPVNC--ISMSNDGNCILASC 203
            V+SV ++ T  I  S  +D  +R +D+  G+++      PV+   ++ S D   +    
Sbjct: 82  GVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGT 141
Query: 204 LDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVV 263
               + +    +G+  +EY       F      +    ++  G+ DG I  +D+    ++
Sbjct: 142 HVGKVNIFGVESGK--KEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLL 199
Query: 264 AKFKAHSLVVKLL 276
              + H++ ++ L
Sbjct: 200 HTLEGHAMPIRSL 212

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 4/128 (3%)
Query: 14  LKGHEGAVLAARFNGDGNYCLSCG-KDRTIRLWN---PHRGIHIKTYKSHGREVRDVHVT 69
            +GHE  V+   FN       + G  DRT+++W+         + T +  G    D +  
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL 195
Query: 70  ADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAW 129
            D   +I+   D  I  WD  T   +    GH S V+   F+    +++S   D +L+ W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 130 DCRSHSTE 137
           +  ++  E
Sbjct: 256 NSSTYKVE 263

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 26  FNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIF 85
           F+    + L+      + LWN    + +++ +     VR     A  + +I    D +I 
Sbjct: 21  FHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80
Query: 86  YWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSF 145
            ++ +TG  +  F  H   + ++  +     V+S   D +++ W+  ++     Q  +  
Sbjct: 81  VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE-QTFEGH 139
Query: 146 QDSVMSVCLTKTE---IIGGSVDGTVR---------TFDIRVGRELSDDLGQPVNCISMS 193
           +  VM V     +      G +D TV+          F +  G+E   +    V+   + 
Sbjct: 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY---VDYYPLP 196
Query: 194 NDGNCILASCLDSTLRLLDRSTGELLQEYKGHICK-SFKTDCCLTNSDAHVTGGSEDGYI 252
           +    I AS  D T+++ D  T   +   +GH+   SF        +   +  GSEDG +
Sbjct: 197 DKPYMITASD-DLTIKIWDYQTKSCVATLEGHMSNVSF---AVFHPTLPIIISGSEDGTL 252
Query: 253 YFWD 256
             W+
Sbjct: 253 KIWN 256

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 4/128 (3%)
Query: 14  LKGHEGAVLAARFNGDGNYCLSCG-KDRTIRLWN---PHRGIHIKTYKSHGREVRDVHVT 69
            +GHE  V+   FN       + G  DRT+++W+         + T +  G    D +  
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL 195
Query: 70  ADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAW 129
            D   +I+   D  I  WD  T   +    GH S V+   F+    +++S   D +L+ W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 130 DCRSHSTE 137
           +  ++  E
Sbjct: 256 NSSTYKVE 263

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 26  FNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIF 85
           F+    + L+      + LWN    + +++ +     VR     A  + +I    D +I 
Sbjct: 21  FHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80
Query: 86  YWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSF 145
            ++ +TG  +  F  H   + ++  +     V+S   D +++ W+  ++     Q  +  
Sbjct: 81  VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE-QTFEGH 139
Query: 146 QDSVMSVCLTKTE---IIGGSVDGTVR---------TFDIRVGRELSDDLGQPVNCISMS 193
           +  VM V     +      G +D TV+          F +  G+E   +    V+   + 
Sbjct: 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY---VDYYPLP 196
Query: 194 NDGNCILASCLDSTLRLLDRSTGELLQEYKGHICK-SFKTDCCLTNSDAHVTGGSEDGYI 252
           +    I AS  D T+++ D  T   +   +GH+   SF        +   +  GSEDG +
Sbjct: 197 DKPYMITASD-DLTIKIWDYQTKSCVATLEGHMSNVSF---AVFHPTLPIIISGSEDGTL 252
Query: 253 YFWD 256
             W+
Sbjct: 253 KIWN 256

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 4/128 (3%)
Query: 14  LKGHEGAVLAARFNGDGNYCLSCG-KDRTIRLWNPHR---GIHIKTYKSHGREVRDVHVT 69
            +GHE  V+   FN       + G  DRT+++W+  +      + T +  G    D +  
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL 195
Query: 70  ADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAW 129
            D   +I+   D  I  WD  T   +    GH S V+   F+    +++S   D +L+ W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 130 DCRSHSTE 137
           +  ++  E
Sbjct: 256 NSSTYKVE 263

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/228 (20%), Positives = 91/228 (39%), Gaps = 21/228 (9%)
Query: 42  IRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGH 101
           + LWN    + +++ +     VR     A  + +I    D +I  ++ +TG  +  F  H
Sbjct: 37  VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH 96
Query: 102 ESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE--- 158
              + ++  +     V+S   D +++ W+  ++     Q  +  +  VM V     +   
Sbjct: 97  PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE-QTFEGHEHFVMCVAFNPKDPST 155
Query: 159 IIGGSVDGTVR---------TFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLR 209
              G +D TV+          F +  G+E   +    V+   + +    I AS  D T++
Sbjct: 156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY---VDYYPLPDKPYMITASD-DLTIK 211
Query: 210 LLDRSTGELLQEYKGHICK-SFKTDCCLTNSDAHVTGGSEDGYIYFWD 256
           + D  T   +   +GH+   SF        +   +  GSEDG +  W+
Sbjct: 212 IWDYQTKSCVATLEGHMSNVSF---AVFHPTLPIIISGSEDGTLKIWN 256

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 4/128 (3%)
Query: 14  LKGHEGAVLAARFNGDGNYCLSCG-KDRTIRLWNPHR---GIHIKTYKSHGREVRDVHVT 69
            +GHE  V+   FN       + G  DRT+++W+  +      + T +  G    D +  
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL 195
Query: 70  ADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAW 129
            D   +I+   D  I  WD  T   +    GH S V+   F+    +++S   D +L+ W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 130 DCRSHSTE 137
           +  ++  E
Sbjct: 256 NSSTYKVE 263

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 86/187 (45%), Gaps = 20/187 (10%)
Query: 14  LKGH--EGAVLAARFNGDGNYCLSCGKDRTIRLWN----PHRG--IHIKT-YKSHGREVR 64
           L+GH  EG  L+   N  G + LS   D TI LW+    P  G  +  KT +  H   V 
Sbjct: 173 LRGHQKEGYGLSWNPNLSG-HLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVE 231
Query: 65  DVHVTADNSKLI-SCGGDRQIFYWDV---STGRVIRKFRGHESEVNAVKFNEYSSVVVSA 120
           DV     +  L  S   D+++  WD    +T +       H +EVN + FN YS  +++ 
Sbjct: 232 DVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILAT 291
Query: 121 G-YDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT---KTEIIGGSVDGTVRTFDI-RV 175
           G  D+++  WD R+   + +   +S +D +  V  +   +T +     D  +  +D+ ++
Sbjct: 292 GSADKTVALWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKI 350
Query: 176 GRELSDD 182
           G E S +
Sbjct: 351 GEEQSPE 357

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 83/185 (44%), Gaps = 20/185 (10%)
Query: 14  LKGH--EGAVLAARFNGDGNYCLSCGKDRTIRLWN----PHRGIHIKT---YKSHGREVR 64
           L+GH  EG  L+   N  G + LS   D T+ LW+    P  G  +     +  H   V 
Sbjct: 175 LRGHQKEGYGLSWNSNLSG-HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 65  DVHVTADNSKLI-SCGGDRQIFYWDV---STGRVIRKFRGHESEVNAVKFNEYSSVVVSA 120
           DV     +  L  S   D+++  WD    +T +       H +EVN + FN YS  +++ 
Sbjct: 234 DVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILAT 293
Query: 121 G-YDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT---KTEIIGGSVDGTVRTFDI-RV 175
           G  D+++  WD R+   + +   +S +D +  V  +   +T +     D  +  +D+ ++
Sbjct: 294 GSADKTVALWDLRNLKLK-LHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKI 352
Query: 176 GRELS 180
           G E S
Sbjct: 353 GEEQS 357

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 17  HEGAVLAARFNGDGNYCLSCG---KDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNS 73
           H+GAV A  +    +  L+ G    DR IR+WN   G  +    +H  +V  +  +    
Sbjct: 195 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPHYK 253
Query: 74  KLISCGG--DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDC 131
           +LIS  G    Q+  W   T   + + +GH S V ++  +   + V SA  D++LR W C
Sbjct: 254 ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 313

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 84/209 (40%), Gaps = 18/209 (8%)
Query: 81  DRQIFYWDVSTGRVIRKFRGHE-----SEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHS 135
           D  ++ W  S+G +++  +  +     S V  +K   Y +V  S+     ++ WD +   
Sbjct: 44  DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA---EVQLWDVQQQK 100
Query: 136 TEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLG---QPVNCISM 192
              ++ + S    V S+      +  GS  G +   D+RV       L    Q V  +  
Sbjct: 101 R--LRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW 158
Query: 193 SNDGNCILASCLDSTLRLLDRSTGE----LLQEYKGHICKSFKTDCCLTNSDAHVTGG-S 247
           + DG  + +   D+ + +   + GE     LQ +  H         C   S+   TGG +
Sbjct: 159 APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT 218
Query: 248 EDGYIYFWDLVDASVVAKFKAHSLVVKLL 276
            D +I  W++   + ++   AHS V  +L
Sbjct: 219 SDRHIRIWNVCSGACLSAVDAHSQVCSIL 247

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 83/185 (44%), Gaps = 20/185 (10%)
Query: 14  LKGH--EGAVLAARFNGDGNYCLSCGKDRTIRLWN----PHRGIHIKT---YKSHGREVR 64
           L+GH  EG  L+   N  G + LS   D T+ LW+    P  G  +     +  H   V 
Sbjct: 175 LRGHQKEGYGLSWNSNLSG-HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 65  DVHVTADNSKLI-SCGGDRQIFYWDV---STGRVIRKFRGHESEVNAVKFNEYSSVVVSA 120
           DV     +  L  S   D+++  WD    +T +       H +EVN + FN YS  +++ 
Sbjct: 234 DVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILAT 293
Query: 121 G-YDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT---KTEIIGGSVDGTVRTFDI-RV 175
           G  D+++  WD R+   + +   +S +D +  V  +   +T +     D  +  +D+ ++
Sbjct: 294 GSADKTVALWDLRNLKLK-LHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKI 352
Query: 176 GRELS 180
           G E S
Sbjct: 353 GEEQS 357

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Query: 14  LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNS 73
           L+GH   V    +  DG    S G D  +++W+    I   T  +H   V+ V      S
Sbjct: 213 LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQS 272
Query: 74  KLISCGG---DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSA-GY-DQSLRA 128
            L++ GG   D+QI +W+ +TG  +       S+V ++ ++ +S  ++S  G+ D +L  
Sbjct: 273 NLLATGGGTMDKQIHFWNAATGARVNTVDA-GSQVTSLIWSPHSKEIMSTHGFPDNNLSI 331
Query: 129 WDCRS 133
           W   S
Sbjct: 332 WSYSS 336

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 17  HEGAVLAARFNGDGNYCLSCG---KDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNS 73
           H+GAV A  +    +  L+ G    DR IR+WN   G  +    +H  +V  +  +    
Sbjct: 275 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPHYK 333
Query: 74  KLISCGG--DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDC 131
           +LIS  G    Q+  W   T   + + +GH S V ++  +   + V SA  D++LR W C
Sbjct: 334 ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 393

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/215 (20%), Positives = 87/215 (40%), Gaps = 18/215 (8%)
Query: 75  LISCGGDRQIFYWDVSTGRVIRKFRGHE-----SEVNAVKFNEYSSVVVSAGYDQSLRAW 129
           +++   D  ++ W  S+G +++  +  +     S V  +K   Y +V  S+     ++ W
Sbjct: 118 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA---EVQLW 174
Query: 130 DCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLG---QP 186
           D +      ++ + S    V S+      +  GS  G +   D+RV       L    Q 
Sbjct: 175 DVQQQKR--LRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE 232
Query: 187 VNCISMSNDGNCILASCLDSTLRLLDRSTGE----LLQEYKGHICKSFKTDCCLTNSDAH 242
           V  +  + DG  + +   D+ + +   + GE     LQ +  H         C   S+  
Sbjct: 233 VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVL 292
Query: 243 VTGG-SEDGYIYFWDLVDASVVAKFKAHSLVVKLL 276
            TGG + D +I  W++   + ++   AHS V  +L
Sbjct: 293 ATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSIL 327

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 17  HEGAVLAARFNGDGNYCLSCG---KDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNS 73
           H+GAV A  +    +  L+ G    DR IR+WN   G  +    +H  +V  +  +    
Sbjct: 286 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPHYK 344
Query: 74  KLISCGG--DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDC 131
           +LIS  G    Q+  W   T   + + +GH S V ++  +   + V SA  D++LR W C
Sbjct: 345 ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 404

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/215 (20%), Positives = 87/215 (40%), Gaps = 18/215 (8%)
Query: 75  LISCGGDRQIFYWDVSTGRVIRKFRGHE-----SEVNAVKFNEYSSVVVSAGYDQSLRAW 129
           +++   D  ++ W  S+G +++  +  +     S V  +K   Y +V  S+     ++ W
Sbjct: 129 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA---EVQLW 185
Query: 130 DCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLG---QP 186
           D +      ++ + S    V S+      +  GS  G +   D+RV       L    Q 
Sbjct: 186 DVQQQKR--LRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE 243
Query: 187 VNCISMSNDGNCILASCLDSTLRLLDRSTGE----LLQEYKGHICKSFKTDCCLTNSDAH 242
           V  +  + DG  + +   D+ + +   + GE     LQ +  H         C   S+  
Sbjct: 244 VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVL 303
Query: 243 VTGG-SEDGYIYFWDLVDASVVAKFKAHSLVVKLL 276
            TGG + D +I  W++   + ++   AHS V  +L
Sbjct: 304 ATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSIL 338

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/278 (20%), Positives = 103/278 (37%), Gaps = 35/278 (12%)
Query: 16  GHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIH-------IKTYKSHGREVRDVHV 68
            H+ A+ +  +    +   +   D T+ +W              +   + H  EV+ V  
Sbjct: 56  AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAW 115
Query: 69  TADNSKLISCGGDRQIFYWDVSTG----RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQ 124
           + D   L +C  D+ ++ W+          I   + H  +V  V ++   +++ S+ YD 
Sbjct: 116 SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDD 175
Query: 125 SLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE----IIGGSVDGTVRTFDIRVGRELS 180
           ++R W       E + +++  + +V S    KTE    +  GS D TVR +      E  
Sbjct: 176 TVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDE-- 233
Query: 181 DDLGQPVNCISMSND------------GNCILASC-LDSTLRLLDRSTGELLQEYKGHIC 227
            D  Q   C ++  D             N ++AS   D  L + +   GE     K  +C
Sbjct: 234 -DDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALC 292
Query: 228 KSFK----TDCCLTNSDAHVTGGSEDGYIYFWDLVDAS 261
                         N    +  G +DG + FW L  A+
Sbjct: 293 HGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEKAA 330

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 18/126 (14%)
Query: 1   MSVSDL----PRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTY 56
           +S+ DL    PR +A  L     A  A   + D   C SC  D  I +W+ H    ++ +
Sbjct: 121 LSIWDLAAPTPRIKAE-LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF 179
Query: 57  KSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSV 116
           + H      + ++ D +KL + G D  +  WD+  GR +++             ++++S 
Sbjct: 180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-------------HDFTSQ 226
Query: 117 VVSAGY 122
           + S GY
Sbjct: 227 IFSLGY 232

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 80/194 (41%), Gaps = 16/194 (8%)
Query: 26  FNGDGNYCLSCGKDRTIRLWNPHRGIHI-KTYKS--HGREVRDVHVTADNSKLISCGGDR 82
           +N  G    SCG DR IR+W       I K+  S  H R VR V  +   + L S   D 
Sbjct: 24  WNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83
Query: 83  QIFYWDVSTG--RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDC-RSHSTEPI 139
               W  +      +    GHE+EV +V +    +++ +   D+S+  W+       E +
Sbjct: 84  TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECV 143
Query: 140 QIIDSFQDSVMSVCLTKTE--IIGGSVDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGN 197
            +++S    V  V    ++  +   S D TV+ +     RE  DD    V C ++    +
Sbjct: 144 SVLNSHTQDVKHVVWHPSQELLASASYDDTVKLY-----REEEDDW---VCCATLEGHES 195
Query: 198 CILASCLDSTLRLL 211
            + +   D + + L
Sbjct: 196 TVWSLAFDPSGQRL 209

>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 42  IRLWNPHRGIHIKTYKSHGREVRDVHVTA-DNSKLISCGGDRQIFYWDVSTGRVIRKF-- 98
           IR+ NP     IK Y  HG  + ++     D + L+S   D  +  W++ T  ++  F  
Sbjct: 133 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 192
Query: 99  -RGHESEVNAVKFNEYSSVVVSAGYDQSLRAW 129
             GH  EV +  ++     ++S G D SL+ W
Sbjct: 193 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 224

>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 42  IRLWNPHRGIHIKTYKSHGREVRDVHVTA-DNSKLISCGGDRQIFYWDVSTGRVIRKF-- 98
           IR+ NP     IK Y  HG  + ++     D + L+S   D  +  W++ T  ++  F  
Sbjct: 97  IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 156
Query: 99  -RGHESEVNAVKFNEYSSVVVSAGYDQSLRAW 129
             GH  EV +  ++     ++S G D SL+ W
Sbjct: 157 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 188

>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 42  IRLWNPHRGIHIKTYKSHGREVRDVHVTA-DNSKLISCGGDRQIFYWDVSTGRVIRKF-- 98
           IR+ NP     IK Y  HG  + ++     D + L+S   D  +  W++ T  ++  F  
Sbjct: 96  IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 155
Query: 99  -RGHESEVNAVKFNEYSSVVVSAGYDQSLRAW 129
             GH  EV +  ++     ++S G D SL+ W
Sbjct: 156 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 187

>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 42  IRLWNPHRGIHIKTYKSHGREVRDVHVTA-DNSKLISCGGDRQIFYWDVSTGRVIRKF-- 98
           IR+ NP     IK Y  HG  + ++     D + L+S   D  +  W++ T  ++  F  
Sbjct: 92  IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 151
Query: 99  -RGHESEVNAVKFNEYSSVVVSAGYDQSLRAW 129
             GH  EV +  ++     ++S G D SL+ W
Sbjct: 152 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 183

>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 42  IRLWNPHRGIHIKTYKSHGREVRDVHVTA-DNSKLISCGGDRQIFYWDVSTGRVIRKF-- 98
           IR+ NP     IK Y  HG  + ++     D + L+S   D  +  W++ T  ++  F  
Sbjct: 96  IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 155
Query: 99  -RGHESEVNAVKFNEYSSVVVSAGYDQSLRAW 129
             GH  EV +  ++     ++S G D SL+ W
Sbjct: 156 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 187

>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 17  HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHV-TADNSKL 75
           H+  V       DG   +S GKD ++++W+  +   +K+Y +H  EV  V      ++  
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF 197
Query: 76  ISCGGDRQIFYWDV 89
           +SCG D +I  WD 
Sbjct: 198 LSCGEDGRILLWDT 211

>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 59  HGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKF-NEYSSVV 117
           H   V+ + V +D ++ +S G D  +  WD+S   V++ +  H SEVN V       ++ 
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF 197
Query: 118 VSAGYDQSLRAWDCRSHSTEPIQIID 143
           +S G D  +  WD R    +P   ID
Sbjct: 198 LSCGEDGRILLWDTR--KPKPATRID 221

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/228 (20%), Positives = 88/228 (38%), Gaps = 35/228 (15%)
Query: 15  KGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSK 74
           + H   +   +F   G   +S  +D  +++W+   G + +T   H   V D+ +      
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 75  LISCGGDRQIFYWDVSTGRVIRKFRGHE------------------------SEVNAVKF 110
           ++S   D  I  W+  TG  I  F   E                        S+ N ++F
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF 252
Query: 111 NEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCL---TKTEIIGGSVDGT 167
             Y   V++      +   +  S   + IQ+   F  S  S+ +       I  G  +G 
Sbjct: 253 GTYGKYVIAGHVSGVITVHNVFSKE-QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGM 311
Query: 168 VRTFDIR-----VGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRL 210
           +  +D+R     VG  L ++ G P+N +  +  G   ++S  D++++L
Sbjct: 312 LAQWDLRSPECPVGEFLINE-GTPINNVYFA-AGALFVSSGFDTSIKL 357

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 108/263 (41%), Gaps = 33/263 (12%)
Query: 16  GHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGR-EVRDVHVTADNSK 74
            H G+V    ++ DG    S   D+TI++WN       KT     R E + + +      
Sbjct: 237 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA 296
Query: 75  LISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRS- 133
           L+S   +  I + +   G + +   GH   + A+  +     + SA  +  + +WD  + 
Sbjct: 297 LVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG 356
Query: 134 ---------HSTEPIQIIDSFQDSVMSVCL---TKTEIIGGS-VDGTVRTFDIRVGRELS 180
                    H+T    I  + +  + +V      K    GGS VD +       V  +LS
Sbjct: 357 ISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSK-----AVANKLS 411
Query: 181 DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDC-CLTNS 239
               QP+  +++S DG+  +A+C      +   S G+L +     +  S+ + C  L+N 
Sbjct: 412 S---QPLG-LAVSADGDIAVAACYK---HIAIYSHGKLTE-----VPISYNSSCVALSND 459
Query: 240 DAHVTGGSEDGYIYFWDLVDASV 262
              V  G +D  ++ + L  ASV
Sbjct: 460 KQFVAVGGQDSKVHVYKLSGASV 482

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/228 (20%), Positives = 88/228 (38%), Gaps = 35/228 (15%)
Query: 15  KGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSK 74
           + H   +   +F   G   +S  +D  +++W+   G + +T   H   V D+ +      
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 75  LISCGGDRQIFYWDVSTGRVIRKFRGHE------------------------SEVNAVKF 110
           ++S   D  I  W+  TG  I  F   E                        S+ N ++F
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF 255
Query: 111 NEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCL---TKTEIIGGSVDGT 167
             Y   V++      +   +  S   + IQ+   F  S  S+ +       I  G  +G 
Sbjct: 256 GTYGKYVIAGHVSGVITVHNVFSKE-QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGM 314
Query: 168 VRTFDIR-----VGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRL 210
           +  +D+R     VG  L ++ G P+N +  +  G   ++S  D++++L
Sbjct: 315 LAQWDLRSPECPVGEFLINE-GTPINNVYFA-AGALFVSSGFDTSIKL 360

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	277
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.98
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.98
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.93
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.93
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.93
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.93
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.92
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.92
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.9
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.9
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.9
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.89
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.89
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.89
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.89
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.88
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.88
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.88
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.87
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.86
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.86
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.86
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.85
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.84
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.84
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.84
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.83
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.83
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.83
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.82
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.8
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.8
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.78
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.77
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.77
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.77
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.77
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.77
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.76
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.75
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.75
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.75
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.75
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.73
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.72
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.71
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.7
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.69
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.69
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.68
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.68
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.67
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.66
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.66
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.66
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.65
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.64
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.63
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.63
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.62
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.62
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.61
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.61
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.58
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.56
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.56
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.55
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.55
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.54
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.53
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.53
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.51
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.49
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.48
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.47
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.46
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.46
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.45
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.44
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.44
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.43
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.42
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.42
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.36
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.35
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.35
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.3
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.27
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.26
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.26
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.24
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.23
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.18
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.17
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.16
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.1
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.1
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.06
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.05
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	99.05
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.04
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.03
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.02
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.0
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.0
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.99
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.97
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.96
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.93
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.93
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.86
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.85
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.83
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.79
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.79
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.78
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.75
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.74
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.67
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.65
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.6
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.59
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.55
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.47
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.46
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.43
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.43
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.42
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.42
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.39
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.36
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.35
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.32
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.31
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.27
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.23
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.22
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.2
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.17
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.17
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.17
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.16
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.15
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.14
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	98.1
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.09
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.07
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.04
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.01
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.0
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.91
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.89
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.87
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.84
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.8
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.78
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.72
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.7
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.66
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.57
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.57
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.55
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.54
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.52
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.51
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.45
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.44
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.4
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.23
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.1
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.07
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.06
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.01
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.96
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.95
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.94
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.78
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.78
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.71
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.7
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.68
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.62
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.48
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.45
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.32
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.17
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.01
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.82
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.64
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.61
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.56
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.1
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	95.0
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.74
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	94.16
3ott_A	758	Two-component system sensor histidine kinase; beta	93.85
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	93.7
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	93.7
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	93.6
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.52
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	93.08
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	92.68
3ott_A	758	Two-component system sensor histidine kinase; beta	92.17
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	92.08
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	92.07
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	91.87
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	91.39
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	86.8
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	85.44
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	85.2
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	81.7

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=7.2e-49  Score=319.83  Aligned_cols=263  Identities=17%  Similarity=0.267  Sum_probs=234.9

Q ss_pred             ccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 023772           10 EANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDV   89 (277)
Q Consensus        10 ~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~   89 (277)
                      ...++++|.++|.+++|+|++++|++++.|++|++||+.++..+..+..|..+|.+++|+|++++|++|+.|++|++||+
T Consensus         5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~   84 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY   84 (304)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred             eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEEC
Confidence            35578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC---CeEEEeecCC
Q 023772           90 STGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK---TEIIGGSVDG  166 (277)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~d~  166 (277)
                      ++++++..+.+|...|.+++|+|+++++++|+.|++|++||++... .....+..|...+.++.+++   ..+++|+.|+
T Consensus        85 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~  163 (304)
T 2ynn_A           85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR  163 (304)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT-EEEEEECCCCSCEEEEEECTTCTTEEEEEETTS
T ss_pred             CCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc-chhhhhcccCCcEEEEEECCCCCCEEEEEeCCC
Confidence            9999999999999999999999999999999999999999997642 23455677888899999876   3599999999


Q ss_pred             cEEEEEccCCcccc---cCCCCCeeEEEEeC--CCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCc
Q 023772          167 TVRTFDIRVGRELS---DDLGQPVNCISMSN--DGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDA  241 (277)
Q Consensus       167 ~i~i~d~~~~~~~~---~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (277)
                      +|++||++......   ..+...+..+.|+|  ++.+|++++.|++|++||+++++++..+.+|...  ...++++|++.
T Consensus       164 ~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~--v~~~~~~p~~~  241 (304)
T 2ynn_A          164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSN--VSFAVFHPTLP  241 (304)
T ss_dssp             EEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSC--EEEEEECSSSS
T ss_pred             eEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCC--EEEEEECCCCC
Confidence            99999998765432   23446788999987  7789999999999999999999999999998644  45567899999


Q ss_pred             eEEeecCCCeEEEEECcCccceeeeccCcceeEe
Q 023772          242 HVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKL  275 (277)
Q Consensus       242 ~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~  275 (277)
                      +|++|+.||.|++||..+++++++++.|...+..
T Consensus       242 ~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~  275 (304)
T 2ynn_A          242 IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWC  275 (304)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCSSSSEEE
T ss_pred             EEEEEcCCCeEEEEECCCCceeeeccCCCccEEE
Confidence            9999999999999999999999999998776654

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=9.8e-48  Score=325.59  Aligned_cols=262  Identities=25%  Similarity=0.384  Sum_probs=236.8

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~   90 (277)
                      ...+.+|.++|++++|+|++.+|+||+.|++|++||..+++...++.+|...|.+++|+|++++|++|+.|++|++||+.
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~  180 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ  180 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEeecCCcE
Q 023772           91 TGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTV  168 (277)
Q Consensus        91 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~d~~i  168 (277)
                      +++++.++.+|...|.+++|+|+++++++|+.|++|++||+++..  ....+..|...+..+.+++  ..+++|+.|++|
T Consensus       181 ~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~--~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v  258 (410)
T 1vyh_C          181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY--CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV  258 (410)
T ss_dssp             SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc--EEEEEeCCCccEEEEEECCCCCEEEEEcCCCeE
Confidence            999999999999999999999999999999999999999998653  4555667778888887765  459999999999


Q ss_pred             EEEEccCCcccc--cCCCCCeeEEEEeCC--------------------CCEEEEEecCCeEEEEECCCCceEEEEeccc
Q 023772          169 RTFDIRVGRELS--DDLGQPVNCISMSND--------------------GNCILASCLDSTLRLLDRSTGELLQEYKGHI  226 (277)
Q Consensus       169 ~i~d~~~~~~~~--~~~~~~v~~~~~s~~--------------------~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~  226 (277)
                      ++||+++++...  ..+...|.+++|+|+                    |.+|++|+.|+.|++||+++++++..+.+|.
T Consensus       259 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~  338 (410)
T 1vyh_C          259 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD  338 (410)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred             EEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCC
Confidence            999998876543  245678999999996                    6789999999999999999999999999886


Q ss_pred             cceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772          227 CKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL  276 (277)
Q Consensus       227 ~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  276 (277)
                      ..  +..++++|++.+|++|+.|+.|++||+.+++++..+.+|...|..+
T Consensus       339 ~~--v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l  386 (410)
T 1vyh_C          339 NW--VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL  386 (410)
T ss_dssp             SC--EEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEE
T ss_pred             Cc--EEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEE
Confidence            43  4566789999999999999999999999999999999999887654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=6.8e-46  Score=306.83  Aligned_cols=265  Identities=20%  Similarity=0.309  Sum_probs=232.9

Q ss_pred             cccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023772            9 TEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWD   88 (277)
Q Consensus         9 ~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd   88 (277)
                      .....|++|.++|.+++|+|++++|+||+.|++|++||..+++.+..+..|...|.+++|+|++++|++|+.|+.+++||
T Consensus        46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~  125 (340)
T 1got_B           46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN  125 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred             hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCC----ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC--eEEEe
Q 023772           89 VSTG----RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--EIIGG  162 (277)
Q Consensus        89 ~~~~----~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g  162 (277)
                      +.++    .....+.+|...|.++.|.+++ .+++++.|++|++||+++.  .....+..|...+.++.++++  .+++|
T Consensus       126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~sg  202 (340)
T 1got_B          126 LKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETG--QQTTTFTGHTGDVMSLSLAPDTRLFVSG  202 (340)
T ss_dssp             TTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             CccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCC--cEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence            9865    3566788999999999999876 4889999999999999764  345566778888988888764  58999


Q ss_pred             ecCCcEEEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCC
Q 023772          163 SVDGTVRTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSD  240 (277)
Q Consensus       163 ~~d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (277)
                      +.|++|++||++++.....  .+...|++++|+|++++|++|+.|++|++||+++++.+..+..+........++++|++
T Consensus       203 ~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g  282 (340)
T 1got_B          203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG  282 (340)
T ss_dssp             ETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTS
T ss_pred             eCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCC
Confidence            9999999999998765433  45678999999999999999999999999999998888777644323345667899999


Q ss_pred             ceEEeecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772          241 AHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL  276 (277)
Q Consensus       241 ~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  276 (277)
                      .++++|+.|+.|++||+.+++.+..+.+|...|..+
T Consensus       283 ~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~  318 (340)
T 1got_B          283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL  318 (340)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             CEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEE
Confidence            999999999999999999999999999999988765

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.2e-45  Score=301.56  Aligned_cols=264  Identities=31%  Similarity=0.569  Sum_probs=233.8

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~   90 (277)
                      ...+.+|.++|.+++|+|++++|++|+.|+.|++|+..+++....+.+|...|.+++|+|++++|++++.|+.|++||++
T Consensus        16 ~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~   95 (312)
T 4ery_A           16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS   95 (312)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             EEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECC
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEeecCCcE
Q 023772           91 TGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTV  168 (277)
Q Consensus        91 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~d~~i  168 (277)
                      +++++..+.+|...|.++.|+|+++++++++.|++|++||++...  ....+..+...+..+.+++  ..+++++.|+.|
T Consensus        96 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  173 (312)
T 4ery_A           96 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK--CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC  173 (312)
T ss_dssp             TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE--EEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcE
Confidence            999999999999999999999999999999999999999997643  3455666777888888765  469999999999


Q ss_pred             EEEEccCCccccc---CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEec-CCCceEE
Q 023772          169 RTFDIRVGRELSD---DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLT-NSDAHVT  244 (277)
Q Consensus       169 ~i~d~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~  244 (277)
                      ++||+++++.+..   ....++.+++|+|++++|++++.|+.|++||+++++++..+.+|..........++ +++.+++
T Consensus       174 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  253 (312)
T 4ery_A          174 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV  253 (312)
T ss_dssp             EEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEE
T ss_pred             EEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEE
Confidence            9999998765432   34567999999999999999999999999999999999999888654433333343 6788999


Q ss_pred             eecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772          245 GGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL  276 (277)
Q Consensus       245 sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  276 (277)
                      +|+.||.|++||+.+++++.++++|...|..+
T Consensus       254 sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~  285 (312)
T 4ery_A          254 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST  285 (312)
T ss_dssp             ECCTTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             EECCCCEEEEEECCCchhhhhhhccCCcEEEE
Confidence            99999999999999999999999998877543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.6e-45  Score=304.97  Aligned_cols=266  Identities=18%  Similarity=0.242  Sum_probs=233.0

Q ss_pred             cccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023772            9 TEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWD   88 (277)
Q Consensus         9 ~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd   88 (277)
                      .....|.+|.++|++++|+|++++|+|||.|++|++||..+++....+..|...|.+++|+|++.+|++|+.|+.+++|+
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~  134 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP  134 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCC------ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC----Ce
Q 023772           89 VSTG------RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK----TE  158 (277)
Q Consensus        89 ~~~~------~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  158 (277)
                      +...      .....+..|...|.++.|+|++..+++++.|++|++||+++..  ....+..|...+..+.+.+    ..
T Consensus       135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~g~~  212 (354)
T 2pbi_B          135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ--LLQSFHGHGADVLCLDLAPSETGNT  212 (354)
T ss_dssp             CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECCCSSCCE
T ss_pred             EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe--EEEEEcCCCCCeEEEEEEeCCCCCE
Confidence            8643      3456778899999999999999999999999999999997653  4556677788887777653    46


Q ss_pred             EEEeecCCcEEEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEe
Q 023772          159 IIGGSVDGTVRTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCL  236 (277)
Q Consensus       159 ~~~g~~d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  236 (277)
                      +++|+.|++|++||+++++.+..  .+...|++++|+|++.+|++++.|++|++||+++++.+..+..+........+++
T Consensus       213 l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~  292 (354)
T 2pbi_B          213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDF  292 (354)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEE
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEE
Confidence            99999999999999998876543  4567899999999999999999999999999999888777765433333456789


Q ss_pred             cCCCceEEeecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772          237 TNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL  276 (277)
Q Consensus       237 ~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  276 (277)
                      +|++.++++|+.|+.|++||+.+++.+..+.+|...|..+
T Consensus       293 s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l  332 (354)
T 2pbi_B          293 SLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTL  332 (354)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEE
T ss_pred             eCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEE
Confidence            9999999999999999999999999999999999888764

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.2e-45  Score=303.04  Aligned_cols=261  Identities=17%  Similarity=0.305  Sum_probs=228.1

Q ss_pred             ceeeccCCcEEEEEEeCC----CCEEEEEeCCCcEEEEcCCCCee--EEEEeccCccEEEEEEcCCCCEEEEEeCCCcEE
Q 023772           12 NVLKGHEGAVLAARFNGD----GNYCLSCGKDRTIRLWNPHRGIH--IKTYKSHGREVRDVHVTADNSKLISCGGDRQIF   85 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~~----~~~l~s~s~d~~v~iwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~   85 (277)
                      ..+.+|.++|.+++|+++    +.+|+|||.|++||+||..+++.  ...+.+|...|.+++|++++..+++++.|++|+
T Consensus        26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~  105 (321)
T 3ow8_A           26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR  105 (321)
T ss_dssp             EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred             eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence            345689999999999874    67999999999999999877653  456889999999999999999999999999999


Q ss_pred             EEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEee
Q 023772           86 YWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGS  163 (277)
Q Consensus        86 ~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~  163 (277)
                      +||+++++.+..+..|...+.+++|+|+++++++++.|+.|++|+++...  ....+..+...+..+.+++  ..+++|+
T Consensus       106 lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~--~~~~~~~~~~~v~~~~~spdg~~lasg~  183 (321)
T 3ow8_A          106 LWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK--KEYSLDTRGKFILSIAYSPDGKYLASGA  183 (321)
T ss_dssp             EEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCS--EEEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred             EEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc--eeEEecCCCceEEEEEECCCCCEEEEEc
Confidence            99999999999999999999999999999999999999999999997653  3444555666777777765  4699999


Q ss_pred             cCCcEEEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCc
Q 023772          164 VDGTVRTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDA  241 (277)
Q Consensus       164 ~d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (277)
                      .|+.|++||+++++.+..  .+..+|++++|+|++++|++++.|+.|++||+++++++..+.+|..  .+..++++|++.
T Consensus       184 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~~sp~~~  261 (321)
T 3ow8_A          184 IDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS--WVLNVAFCPDDT  261 (321)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSS
T ss_pred             CCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCC--ceEEEEECCCCC
Confidence            999999999998876543  3556899999999999999999999999999999999999998854  346678999999


Q ss_pred             eEEeecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772          242 HVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL  276 (277)
Q Consensus       242 ~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  276 (277)
                      +|++|+.|+.|++||+.+++++.++.+|...|..+
T Consensus       262 ~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v  296 (321)
T 3ow8_A          262 HFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGV  296 (321)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             EEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEE
Confidence            99999999999999999999999999998877654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.9e-44  Score=295.71  Aligned_cols=247  Identities=23%  Similarity=0.416  Sum_probs=206.8

Q ss_pred             cceeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEcCCC-----CeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcE
Q 023772           11 ANVLKGHEGAVLAARFNGDG-NYCLSCGKDRTIRLWNPHR-----GIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQI   84 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~-~~l~s~s~d~~v~iwd~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v   84 (277)
                      ...|.||.++|.+++|+|++ ++|+|||.|++|++|++..     +.++..+.+|...|.+++|+|++++|++|+.|++|
T Consensus        10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v   89 (319)
T 3frx_A           10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL   89 (319)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEE
Confidence            45688999999999999965 8999999999999999753     34577899999999999999999999999999999


Q ss_pred             EEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC-------
Q 023772           85 FYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT-------  157 (277)
Q Consensus        85 ~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  157 (277)
                      ++||+++++++..+.+|..+|.+++|+|++.++++|+.|++|++||++.   .....+..+...+..+.+.+.       
T Consensus        90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~~~  166 (319)
T 3frx_A           90 RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG---QCLATLLGHNDWVSQVRVVPNEKADDDS  166 (319)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS---CEEEEECCCSSCEEEEEECCC------C
T ss_pred             EEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC---CeEEEEeccCCcEEEEEEccCCCCCCCc
Confidence            9999999999999999999999999999999999999999999999864   244556677778888877653       


Q ss_pred             -eEEEeecCCcEEEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEecccc-------
Q 023772          158 -EIIGGSVDGTVRTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHIC-------  227 (277)
Q Consensus       158 -~~~~g~~d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~-------  227 (277)
                       .+++++.|++|++||++..+....  .+..+|++++|+|+|++|++++.|+.|++||+.+++++..+..+..       
T Consensus       167 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s  246 (319)
T 3frx_A          167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFS  246 (319)
T ss_dssp             CEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEEC
T ss_pred             cEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEc
Confidence             589999999999999987764432  4567899999999999999999999999999998877666543210       


Q ss_pred             ---------------------------------------ceeeeeeEecCCCceEEeecCCCeEEEEECcCc
Q 023772          228 ---------------------------------------KSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDA  260 (277)
Q Consensus       228 ---------------------------------------~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~  260 (277)
                                                             ......++++|++++|++|+.||.|++||+.++
T Consensus       247 p~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          247 PNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             SSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             CCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence                                                   011234566777777777777777777777654

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.1e-44  Score=306.86  Aligned_cols=244  Identities=25%  Similarity=0.415  Sum_probs=220.1

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~   90 (277)
                      ...+.+|.++|.+++|+|++++|++|+.|++|++||+.+++++.++.+|...|.+++|+|++++|++|+.|++|++||+.
T Consensus       143 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~  222 (410)
T 1vyh_C          143 ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ  222 (410)
T ss_dssp             CEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred             EEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--------------
Q 023772           91 TGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--------------  156 (277)
Q Consensus        91 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--------------  156 (277)
                      +++++.++.+|...|.++.+++++.++++|+.|++|++||++...  ....+..+...+.++.+.+              
T Consensus       223 ~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~  300 (410)
T 1vyh_C          223 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE--CKAELREHRHVVECISWAPESSYSSISEATGSE  300 (410)
T ss_dssp             TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC
T ss_pred             CCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc--eeeEecCCCceEEEEEEcCcccccchhhhcccc
Confidence            999999999999999999999999999999999999999997643  3445667778888888765              


Q ss_pred             --------CeEEEeecCCcEEEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccc
Q 023772          157 --------TEIIGGSVDGTVRTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHI  226 (277)
Q Consensus       157 --------~~~~~g~~d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~  226 (277)
                              ..+++|+.|++|++||+++++.+..  .+...|++++|+|+|++|++|+.|+.|++||+.+++++..+.+|.
T Consensus       301 ~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~  380 (410)
T 1vyh_C          301 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE  380 (410)
T ss_dssp             -------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCS
T ss_pred             ccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCC
Confidence                    3589999999999999998876543  356689999999999999999999999999999999999999886


Q ss_pred             cceeeeeeEecCCCceEEeecCCCeEEEEECc
Q 023772          227 CKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLV  258 (277)
Q Consensus       227 ~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~  258 (277)
                      ..  +..++++|++.+|++|+.||.|++|+++
T Consensus       381 ~~--v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          381 HF--VTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             SC--EEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             Cc--EEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            43  5667889999999999999999999863

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=6.4e-45  Score=305.40  Aligned_cols=264  Identities=23%  Similarity=0.384  Sum_probs=225.2

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~   90 (277)
                      ...|.+|.++|++++|+|++++|+|||.|++|+|||..+++....+..|...|.+++|+|++++|++|+.|+.+++||+.
T Consensus        59 ~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~  138 (380)
T 3iz6_a           59 CRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLS  138 (380)
T ss_dssp             EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECC
T ss_pred             eecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECC
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             CCc-------eeEEeecccCceeEEEEecC-CCEEEEEeCCCcEEEEeCccCCCcceEee-----ccccCcEEEEEec--
Q 023772           91 TGR-------VIRKFRGHESEVNAVKFNEY-SSVVVSAGYDQSLRAWDCRSHSTEPIQII-----DSFQDSVMSVCLT--  155 (277)
Q Consensus        91 ~~~-------~~~~~~~h~~~v~~i~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~--  155 (277)
                      +..       ....+.+|...|.++.|.|+ +..+++|+.|++|++||+++...  ...+     ..|...+..+.+.  
T Consensus       139 ~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~  216 (380)
T 3iz6_a          139 SQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR--ISIFGSEFPSGHTADVLSLSINSL  216 (380)
T ss_dssp             CCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE--EEEECCCSSSSCCSCEEEEEECSS
T ss_pred             CCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE--EEEeecccCCCCccCeEEEEeecC
Confidence            532       34567899999999999987 45799999999999999986543  2222     3566778888774  


Q ss_pred             -CCeEEEeecCCcEEEEEccCC-cccc--cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccc---
Q 023772          156 -KTEIIGGSVDGTVRTFDIRVG-RELS--DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICK---  228 (277)
Q Consensus       156 -~~~~~~g~~d~~i~i~d~~~~-~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~---  228 (277)
                       ++.+++|+.|++|++||++.. +.+.  ..+...|++++|+|++++|++|+.|++|++||+++++.+..+..+...   
T Consensus       217 ~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~  296 (380)
T 3iz6_a          217 NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDN  296 (380)
T ss_dssp             SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCC
T ss_pred             CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccccc
Confidence             456999999999999999844 3322  345678999999999999999999999999999999998888654321   


Q ss_pred             --eeeeeeEecCCCceEEeecCCCeEEEEECcCccceeee----ccCcceeEee
Q 023772          229 --SFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKF----KAHSLVVKLL  276 (277)
Q Consensus       229 --~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~----~~h~~~v~~~  276 (277)
                        .....++++|++.++++|+.||.|++||..+++.+..+    .+|...|..+
T Consensus       297 ~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l  350 (380)
T 3iz6_a          297 ELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCL  350 (380)
T ss_dssp             SSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEE
T ss_pred             ccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEE
Confidence              12456789999999999999999999999999988877    6788877654

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=5.1e-44  Score=295.81  Aligned_cols=245  Identities=19%  Similarity=0.214  Sum_probs=200.3

Q ss_pred             eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEE----EEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 023772           14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIK----TYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDV   89 (277)
Q Consensus        14 l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~----~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~   89 (277)
                      ...|+.+|.+++|++++ .|++|+.||+|+|||+.+++.+.    ...+|...|++++|+|++++|++|+.|++|++||+
T Consensus        78 ~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~  156 (344)
T 4gqb_B           78 GVQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDL  156 (344)
T ss_dssp             EEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             eeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence            34578899999999985 78899999999999998876543    34589999999999999999999999999999999


Q ss_pred             CCCceeEEeecccCceeEEEEecCCC-EEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC---CeEEEeecC
Q 023772           90 STGRVIRKFRGHESEVNAVKFNEYSS-VVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK---TEIIGGSVD  165 (277)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~d  165 (277)
                      ++++++.++.+|...|.+++|++++. ++++++.|++|++||++............+...+.++.+.+   ..+++|+.|
T Consensus       157 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d  236 (344)
T 4gqb_B          157 AQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN  236 (344)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETT
T ss_pred             CCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccC
Confidence            99999999999999999999999874 78999999999999998764432222233444567777664   347899999


Q ss_pred             CcEEEEEccCCccccc--CCCCCeeEEEEeCCC-CEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCc-
Q 023772          166 GTVRTFDIRVGRELSD--DLGQPVNCISMSNDG-NCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDA-  241 (277)
Q Consensus       166 ~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  241 (277)
                      ++|++||+++++.+..  .+...|++++|+|++ ++|++|+.|++|++||+++++++ .+.+|..  .+..++|+|++. 
T Consensus       237 g~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~--~V~~v~~sp~~~~  313 (344)
T 4gqb_B          237 GTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRD--FVRDATWSPLNHS  313 (344)
T ss_dssp             SEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSS--CEEEEEECSSSTT
T ss_pred             CcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCC--CEEEEEEeCCCCe
Confidence            9999999998876543  456789999999998 57899999999999999988765 4677754  356678899876 


Q ss_pred             eEEeecCCCeEEEEECcCccc
Q 023772          242 HVTGGSEDGYIYFWDLVDASV  262 (277)
Q Consensus       242 ~l~sgs~d~~i~iwd~~~~~~  262 (277)
                      +|++|+.|++|++|++.+..+
T Consensus       314 llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          314 LLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             EEEEEETTSCEEEEECCC---
T ss_pred             EEEEEcCCCeEEEEECCCCCC
Confidence            577999999999999987644

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1e-43  Score=288.41  Aligned_cols=245  Identities=17%  Similarity=0.234  Sum_probs=205.2

Q ss_pred             ceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCC--CeeEEEEeccCccEEEEEEcCC--CCEEEEEeCCCcEEEE
Q 023772           12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHR--GIHIKTYKSHGREVRDVHVTAD--NSKLISCGGDRQIFYW   87 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~--~~~~~~~~~h~~~v~~~~~~~~--~~~l~t~s~d~~v~~w   87 (277)
                      .++.+|.++|.+++|+|+|++|+||+.|++|+|||+..  ++.+.++.+|.++|++++|+++  +++|++|+.|++|++|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            46789999999999999999999999999999999864  4678899999999999999863  7899999999999999


Q ss_pred             ECCCCc--eeEEeecccCceeEEEEecC--CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC------
Q 023772           88 DVSTGR--VIRKFRGHESEVNAVKFNEY--SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT------  157 (277)
Q Consensus        88 d~~~~~--~~~~~~~h~~~v~~i~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~------  157 (277)
                      |+++++  .+..+..|...|.+++|+|+  +.+|++++.|++|++||++.........+..|...+.++.+++.      
T Consensus        83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~  162 (297)
T 2pm7_B           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (297)
T ss_dssp             EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred             EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence            998874  56678889999999999997  88999999999999999976533233456677888888888763      


Q ss_pred             ---------eEEEeecCCcEEEEEccCCcc----c--ccCCCCCeeEEEEeCCC---CEEEEEecCCeEEEEECCCCc--
Q 023772          158 ---------EIIGGSVDGTVRTFDIRVGRE----L--SDDLGQPVNCISMSNDG---NCILASCLDSTLRLLDRSTGE--  217 (277)
Q Consensus       158 ---------~~~~g~~d~~i~i~d~~~~~~----~--~~~~~~~v~~~~~s~~~---~~l~~~~~d~~i~~wd~~~~~--  217 (277)
                               .+++|+.|++|++||++.++.    .  ...+...|++++|+|++   .+|++++.|++|++||+++..  
T Consensus       163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~  242 (297)
T 2pm7_B          163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP  242 (297)
T ss_dssp             -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred             cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence                     699999999999999987542    1  22456789999999984   889999999999999997643  


Q ss_pred             e-EEEE--eccccceeeeeeEecCCCceEEeecCCCeEEEEECc
Q 023772          218 L-LQEY--KGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLV  258 (277)
Q Consensus       218 ~-~~~~--~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~  258 (277)
                      . ...+  ..|  ......++++|++.+|++|+.|+.|++|+..
T Consensus       243 ~~~~~~~~~~~--~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          243 WKKTLLKEEKF--PDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             CEEEESSSSCC--SSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             cceeeeecccC--CCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            1 1222  233  2345667899999999999999999999976

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.7e-43  Score=290.16  Aligned_cols=243  Identities=14%  Similarity=0.225  Sum_probs=219.3

Q ss_pred             ceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 023772           12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVST   91 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~   91 (277)
                      ..+.+|..+|.+++|++++.+++|++.|++|++||+.+++.+..+..|...+.+++|+|++++|++++.|+.|++||+++
T Consensus        74 ~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~  153 (321)
T 3ow8_A           74 WSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES  153 (321)
T ss_dssp             EEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTT
T ss_pred             eeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCC
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC--eEEEeecCCcEE
Q 023772           92 GRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--EIIGGSVDGTVR  169 (277)
Q Consensus        92 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~  169 (277)
                      ++....+..|...|.+++|+|++++|++++.|+.|++||+++.  .....+..+...+.++.++++  .+++|+.|++|+
T Consensus       154 ~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~  231 (321)
T 3ow8_A          154 GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG--KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIK  231 (321)
T ss_dssp             CSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEE
T ss_pred             CceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCC--cEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEE
Confidence            9999999999999999999999999999999999999999764  345556677777888877654  599999999999


Q ss_pred             EEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeec
Q 023772          170 TFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGS  247 (277)
Q Consensus       170 i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs  247 (277)
                      +||++.++....  .+...|.+++|+|++.+|++++.|++|++||+.+++++..+.+|...  +..++++|++.+|++++
T Consensus       232 iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~--v~~v~~s~~g~~l~s~~  309 (321)
T 3ow8_A          232 IYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQ--VWGVKYNGNGSKIVSVG  309 (321)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC--EEEEEECTTSSEEEEEE
T ss_pred             EEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCc--EEEEEECCCCCEEEEEe
Confidence            999987765433  35568999999999999999999999999999999999999988643  45677899999999999


Q ss_pred             CCCeEEEEECc
Q 023772          248 EDGYIYFWDLV  258 (277)
Q Consensus       248 ~d~~i~iwd~~  258 (277)
                      .||.|++||..
T Consensus       310 ~d~~i~vwd~p  320 (321)
T 3ow8_A          310 DDQEIHIYDCP  320 (321)
T ss_dssp             TTCCEEEEECC
T ss_pred             CCCeEEEEeCC
Confidence            99999999974

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=5.2e-43  Score=295.04  Aligned_cols=255  Identities=23%  Similarity=0.426  Sum_probs=214.3

Q ss_pred             ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCc------------------cEEEEEEcCCCCEEEE
Q 023772           16 GHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGR------------------EVRDVHVTADNSKLIS   77 (277)
Q Consensus        16 ~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~------------------~v~~~~~~~~~~~l~t   77 (277)
                      +|.+.|.+++|+|+|++|++|+ |+++++|++.+++.+..+..|..                  .|++++|+|++++|++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            6999999999999999999976 68999999999988887765532                  4999999999999999


Q ss_pred             EeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC-
Q 023772           78 CGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK-  156 (277)
Q Consensus        78 ~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-  156 (277)
                      |+.|++|++||+++++++..+.+|...|.+++|+|+++++++++.|++|++||+++...  ...+ .+...+..+.+.+ 
T Consensus       141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~--~~~~-~~~~~v~~~~~~~~  217 (393)
T 1erj_A          141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC--SLTL-SIEDGVTTVAVSPG  217 (393)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE--EEEE-ECSSCEEEEEECST
T ss_pred             EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee--EEEE-EcCCCcEEEEEECC
Confidence            99999999999999999999999999999999999999999999999999999986532  2222 2345566666654 


Q ss_pred             --CeEEEeecCCcEEEEEccCCcccc---------cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCC---------
Q 023772          157 --TEIIGGSVDGTVRTFDIRVGRELS---------DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTG---------  216 (277)
Q Consensus       157 --~~~~~g~~d~~i~i~d~~~~~~~~---------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~---------  216 (277)
                        ..+++|+.|+.|++||+++++.+.         ..+...|.+++|+|+|++|++++.|+.|++||+++.         
T Consensus       218 ~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  297 (393)
T 1erj_A          218 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP  297 (393)
T ss_dssp             TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------
T ss_pred             CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCC
Confidence              569999999999999998775432         234568999999999999999999999999998753         


Q ss_pred             ---ceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772          217 ---ELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL  276 (277)
Q Consensus       217 ---~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  276 (277)
                         .+...+.+|..  ....+++++++.+|++|+.|+.|++||..+++.+..+++|...|..+
T Consensus       298 ~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v  358 (393)
T 1erj_A          298 NSGTCEVTYIGHKD--FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV  358 (393)
T ss_dssp             ---CEEEEEECCSS--CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             CCCcceEEEecccC--cEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEE
Confidence               34556677754  34567789999999999999999999999999999999998877543

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3.4e-43  Score=290.90  Aligned_cols=256  Identities=16%  Similarity=0.175  Sum_probs=208.6

Q ss_pred             eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCC-----------CeeEEEEeccCccEEEEEEcCCCCEEEEEeCCC
Q 023772           14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHR-----------GIHIKTYKSHGREVRDVHVTADNSKLISCGGDR   82 (277)
Q Consensus        14 l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~   82 (277)
                      ...|++.|.+++|+|||++|++++ |+++|+||...           .........|...|.+++|+++ ++|++|+.||
T Consensus        26 ~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~l~~~s~dg  103 (344)
T 4gqb_B           26 PACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGE-RGILVASDSG  103 (344)
T ss_dssp             CSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETT-TEEEEEETTS
T ss_pred             cccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCC-CeEEEEECCC
Confidence            346888999999999999999887 77889987321           1111222345678999999998 5788999999


Q ss_pred             cEEEEECCCCceeEE----eecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC-
Q 023772           83 QIFYWDVSTGRVIRK----FRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT-  157 (277)
Q Consensus        83 ~v~~wd~~~~~~~~~----~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-  157 (277)
                      +|++||+++++.+..    ..+|...|++++|+|++++|++|+.|++|++||+++.  ..+..+..|...+..+.+++. 
T Consensus       104 ~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~--~~~~~~~~h~~~V~~~~~~~~~  181 (344)
T 4gqb_B          104 AVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ--VVLSSYRAHAAQVTCVAASPHK  181 (344)
T ss_dssp             EEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEEEECSSC
T ss_pred             EEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC--cEEEEEcCcCCceEEEEecCCC
Confidence            999999998876543    4589999999999999999999999999999999764  345667788899999888654 


Q ss_pred             --eEEEeecCCcEEEEEccCCccccc----CCCCCeeEEEEeCC-CCEEEEEecCCeEEEEECCCCceEEEEecccccee
Q 023772          158 --EIIGGSVDGTVRTFDIRVGRELSD----DLGQPVNCISMSND-GNCILASCLDSTLRLLDRSTGELLQEYKGHICKSF  230 (277)
Q Consensus       158 --~~~~g~~d~~i~i~d~~~~~~~~~----~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~  230 (277)
                        .+++++.|++|++||+++++....    .....+.+++|+|+ +++|++|+.|+.|++||+++++++..+.+|...  
T Consensus       182 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~--  259 (344)
T 4gqb_B          182 DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQC--  259 (344)
T ss_dssp             TTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSC--
T ss_pred             CCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCC--
Confidence              478999999999999998875433    23457899999995 567889999999999999999999999998654  


Q ss_pred             eeeeEecCCC-ceEEeecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772          231 KTDCCLTNSD-AHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL  276 (277)
Q Consensus       231 ~~~~~~~~~~-~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  276 (277)
                      +..++|+|++ ++|++|+.|++|++||+.+++++ ++.+|...|..+
T Consensus       260 v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v  305 (344)
T 4gqb_B          260 VTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDA  305 (344)
T ss_dssp             EEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEE
T ss_pred             EEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEE
Confidence            4566789987 57999999999999999998765 578999888764

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.4e-42  Score=286.16  Aligned_cols=265  Identities=20%  Similarity=0.288  Sum_probs=216.4

Q ss_pred             ccceeeccCC-cEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEE---EEeccCccEEEEEEcCCCCEEEEEeCCCcEE
Q 023772           10 EANVLKGHEG-AVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIK---TYKSHGREVRDVHVTADNSKLISCGGDRQIF   85 (277)
Q Consensus        10 ~~~~l~~H~~-~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~   85 (277)
                      ....+.+|.+ +|.+++|+|+|++|+||+.|++|+|||..++....   ...+|...|.+++|+|++++|++|+.|++++
T Consensus         7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~   86 (345)
T 3fm0_A            7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTC   86 (345)
T ss_dssp             EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEE
Confidence            4566789988 99999999999999999999999999998875432   2367999999999999999999999999999


Q ss_pred             EEECCCC--ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCC-cceEeeccccCcEEEEEecCC--eEE
Q 023772           86 YWDVSTG--RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHST-EPIQIIDSFQDSVMSVCLTKT--EII  160 (277)
Q Consensus        86 ~wd~~~~--~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~  160 (277)
                      +||+.++  +++..+.+|..+|.+++|+|++++|++|+.|++|++||++.... .....+..+...+..+.++++  .++
T Consensus        87 iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~  166 (345)
T 3fm0_A           87 IWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLA  166 (345)
T ss_dssp             EEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEE
T ss_pred             EEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEE
Confidence            9999876  46788999999999999999999999999999999999976432 234456677888888887754  599


Q ss_pred             EeecCCcEEEEEccCCccc----ccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCC---------------ceEEE
Q 023772          161 GGSVDGTVRTFDIRVGREL----SDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTG---------------ELLQE  221 (277)
Q Consensus       161 ~g~~d~~i~i~d~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~---------------~~~~~  221 (277)
                      +|+.|++|++||++.+...    ...+...|++++|+|+|++|++++.|++|++||....               +++..
T Consensus       167 s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~  246 (345)
T 3fm0_A          167 SASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICT  246 (345)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEE
T ss_pred             EEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEE
Confidence            9999999999999876422    2345678999999999999999999999999996321               23344


Q ss_pred             Eec-cccceeeeeeEecCCCceEEeecCCCeEEEEECcCccc---------eeeeccCcceeEee
Q 023772          222 YKG-HICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASV---------VAKFKAHSLVVKLL  276 (277)
Q Consensus       222 ~~~-~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~---------~~~~~~h~~~v~~~  276 (277)
                      +.+ |.  ..+..+++++++..+++++.|+.|++|+...+..         .+.+.+|...|..+
T Consensus       247 ~~~~h~--~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v  309 (345)
T 3fm0_A          247 LSGFHS--RTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCV  309 (345)
T ss_dssp             ECSSCS--SCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEE
T ss_pred             ecCCCC--CcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEe
Confidence            444 32  2345677899999999999999999999876531         23345788777654

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.4e-42  Score=285.84  Aligned_cols=251  Identities=22%  Similarity=0.330  Sum_probs=204.7

Q ss_pred             ccceeeccCCcEEEEEE-----eC-CCCEEEEEeCCCcEEEEcCCC-------CeeEEEEeccCccEEEEEEcCCCCEEE
Q 023772           10 EANVLKGHEGAVLAARF-----NG-DGNYCLSCGKDRTIRLWNPHR-------GIHIKTYKSHGREVRDVHVTADNSKLI   76 (277)
Q Consensus        10 ~~~~l~~H~~~V~~~~~-----~~-~~~~l~s~s~d~~v~iwd~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~l~   76 (277)
                      ....|.||.++|++++|     ++ ++++|+||+.|++|++||+.+       +.+...+.+|...|.+++|+|++.+++
T Consensus        13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~   92 (343)
T 2xzm_R           13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAI   92 (343)
T ss_dssp             EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred             eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEE
Confidence            35678999999999999     66 899999999999999999864       345678899999999999999999999


Q ss_pred             EEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC
Q 023772           77 SCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK  156 (277)
Q Consensus        77 t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (277)
                      +|+.|++|++||+++++++..+.+|..+|.+++|+|+++++++++.|++|++||+.............+...+..+.+++
T Consensus        93 s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~  172 (343)
T 2xzm_R           93 SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSP  172 (343)
T ss_dssp             EEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECC
T ss_pred             EEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecc
Confidence            99999999999999999999999999999999999999999999999999999986321111111124566777777765


Q ss_pred             ------------CeEEEeecCCcEEEEEccCCcc-cccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECC-CCceEEEE
Q 023772          157 ------------TEIIGGSVDGTVRTFDIRVGRE-LSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRS-TGELLQEY  222 (277)
Q Consensus       157 ------------~~~~~g~~d~~i~i~d~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~-~~~~~~~~  222 (277)
                                  ..+++++.|+.|++||...... ....+...|++++|+|+|++|++|+.|+.|++||+. .......+
T Consensus       173 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~  252 (343)
T 2xzm_R          173 IMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF  252 (343)
T ss_dssp             CCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE
T ss_pred             ccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee
Confidence                        3589999999999999543221 123456789999999999999999999999999994 44444444


Q ss_pred             eccccceeeeeeEecCCCceEEeecCCCeEEEEECcCcccee
Q 023772          223 KGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVA  264 (277)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~  264 (277)
                      ...   .....++++|++.++++| .|+.|++||+.+++...
T Consensus       253 ~~~---~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~  290 (343)
T 2xzm_R          253 DAG---STINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAP  290 (343)
T ss_dssp             ECS---SCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCS
T ss_pred             cCC---CcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCc
Confidence            322   124567889999888765 57789999999877654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4.5e-42  Score=283.95  Aligned_cols=241  Identities=22%  Similarity=0.378  Sum_probs=213.0

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC----eeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEE
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG----IHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFY   86 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~   86 (277)
                      ...+..|...|.+++|+|++++|++|+.|+.+++||+.++    .....+.+|.+.|.++.|++++ .+++++.|++|++
T Consensus        90 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~  168 (340)
T 1got_B           90 VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCAL  168 (340)
T ss_dssp             EEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEE
T ss_pred             ceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEE
Confidence            4556789999999999999999999999999999998765    4567788999999999999876 5899999999999


Q ss_pred             EECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEeec
Q 023772           87 WDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSV  164 (277)
Q Consensus        87 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~  164 (277)
                      ||+++++++.++.+|..+|.+++|+|+++++++|+.|++|++||++...  ....+..|...+.++.+++  ..+++|+.
T Consensus       169 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~--~~~~~~~h~~~v~~v~~~p~~~~l~s~s~  246 (340)
T 1got_B          169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM--CRQTFTGHESDINAICFFPNGNAFATGSD  246 (340)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS--EEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCe--eEEEEcCCcCCEEEEEEcCCCCEEEEEcC
Confidence            9999999999999999999999999999999999999999999997643  4556677888888888875  45999999


Q ss_pred             CCcEEEEEccCCcccccC----CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCC
Q 023772          165 DGTVRTFDIRVGRELSDD----LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSD  240 (277)
Q Consensus       165 d~~i~i~d~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (277)
                      |++|++||++.++.+...    ....+.+++|+|+|++|++|+.|+.|++||..+++.+..+.+|...  +..++++|++
T Consensus       247 d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~--v~~~~~s~dg  324 (340)
T 1got_B          247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR--VSCLGVTDDG  324 (340)
T ss_dssp             TSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC--EEEEEECTTS
T ss_pred             CCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCc--EEEEEEcCCC
Confidence            999999999987654321    2246999999999999999999999999999999999999998654  4566789999


Q ss_pred             ceEEeecCCCeEEEEE
Q 023772          241 AHVTGGSEDGYIYFWD  256 (277)
Q Consensus       241 ~~l~sgs~d~~i~iwd  256 (277)
                      .+|++|+.|+.|++||
T Consensus       325 ~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          325 MAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SCEEEEETTSCEEEEC
T ss_pred             CEEEEEcCCccEEecC
Confidence            9999999999999997

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.3e-42  Score=287.51  Aligned_cols=247  Identities=19%  Similarity=0.243  Sum_probs=200.0

Q ss_pred             ceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeE----EEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 023772           12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHI----KTYKSHGREVRDVHVTADNSKLISCGGDRQIFYW   87 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~----~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~w   87 (277)
                      ....+|.+.|.+++|+|++. +++++.||+|+|||+.+++..    ....+|...|++++|+|++++|++|+.|++|++|
T Consensus        88 ~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iw  166 (357)
T 4g56_B           88 TAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVW  166 (357)
T ss_dssp             SEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred             cccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            34467999999999999975 557889999999999887643    2345799999999999999999999999999999


Q ss_pred             ECCCCceeEEeecccCceeEEEEecCCC-EEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC---eEEEee
Q 023772           88 DVSTGRVIRKFRGHESEVNAVKFNEYSS-VVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT---EIIGGS  163 (277)
Q Consensus        88 d~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~  163 (277)
                      |+++++++..+.+|...|++++|++++. ++++++.|++|++||++............+...+.++.+++.   .+++|+
T Consensus       167 d~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~  246 (357)
T 4g56_B          167 DLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGD  246 (357)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEE
T ss_pred             ECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEee
Confidence            9999999999999999999999999874 789999999999999987654444444455667888887653   488999


Q ss_pred             cCCcEEEEEccCCccccc--CCCCCeeEEEEeCCC-CEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecC-C
Q 023772          164 VDGTVRTFDIRVGRELSD--DLGQPVNCISMSNDG-NCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN-S  239 (277)
Q Consensus       164 ~d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~  239 (277)
                      .|+.|++||+++++.+..  .+...|++++|+|++ ++|++|+.|++|++||++++++++.+ +|..  .+..++|+| +
T Consensus       247 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~--~V~~vafsP~d  323 (357)
T 4g56_B          247 ETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRD--FVTGVAWSPLD  323 (357)
T ss_dssp             SSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSS--CEEEEEECSSS
T ss_pred             cccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCC--CEEEEEEeCCC
Confidence            999999999998776543  355789999999987 57899999999999999999887654 5643  356678898 7


Q ss_pred             CceEEeecCCCeEEEEECcCccc
Q 023772          240 DAHVTGGSEDGYIYFWDLVDASV  262 (277)
Q Consensus       240 ~~~l~sgs~d~~i~iwd~~~~~~  262 (277)
                      +.+|++|+.||+|++||+.+...
T Consensus       324 ~~~l~s~s~Dg~v~iW~~~~~~~  346 (357)
T 4g56_B          324 HSKFTTVGWDHKVLHHHLPSEGR  346 (357)
T ss_dssp             TTEEEEEETTSCEEEEECC----
T ss_pred             CCEEEEEcCCCeEEEEECCCCCc
Confidence            89999999999999999976433

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.4e-42  Score=287.44  Aligned_cols=257  Identities=15%  Similarity=0.177  Sum_probs=206.2

Q ss_pred             eeccCCcEEEEEEeCCCCEEEEEeC------CCcEEEEcCCCCee----EEEEeccCccEEEEEEcCCCCEEEEEeCCCc
Q 023772           14 LKGHEGAVLAARFNGDGNYCLSCGK------DRTIRLWNPHRGIH----IKTYKSHGREVRDVHVTADNSKLISCGGDRQ   83 (277)
Q Consensus        14 l~~H~~~V~~~~~~~~~~~l~s~s~------d~~v~iwd~~~~~~----~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~   83 (277)
                      ..+|++.|++++|+|||++|+|||.      |+.+++|+..++..    .....+|...|.+++|+|++ .+++++.|++
T Consensus        38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~-~~l~~s~dg~  116 (357)
T 4g56_B           38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEK-GILVASDSGA  116 (357)
T ss_dssp             --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTT-EEEEEETTSC
T ss_pred             cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCC-CEEEEECCCE
Confidence            3579999999999999999999998      78899999876543    23455688899999999986 5667889999


Q ss_pred             EEEEECCCCceeE----EeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC--
Q 023772           84 IFYWDVSTGRVIR----KFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--  157 (277)
Q Consensus        84 v~~wd~~~~~~~~----~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--  157 (277)
                      |++||+.+++...    ...+|..+|.+++|+|++++|++++.|++|++||+++.  .....+..|...+..+.+.+.  
T Consensus       117 v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~--~~~~~~~~h~~~v~~v~~s~~~~  194 (357)
T 4g56_B          117 VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK--AVLKSYNAHSSEVNCVAACPGKD  194 (357)
T ss_dssp             EEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEEEECTTCS
T ss_pred             EEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC--cEEEEEcCCCCCEEEEEEccCCC
Confidence            9999998876432    34579999999999999999999999999999998764  345566778888988888643  


Q ss_pred             -eEEEeecCCcEEEEEccCCccccc----CCCCCeeEEEEeCC-CCEEEEEecCCeEEEEECCCCceEEEEeccccceee
Q 023772          158 -EIIGGSVDGTVRTFDIRVGRELSD----DLGQPVNCISMSND-GNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFK  231 (277)
Q Consensus       158 -~~~~g~~d~~i~i~d~~~~~~~~~----~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~  231 (277)
                       .+++++.|++|++||+++++....    .....+.+++|+|+ +.+|++|+.|+.|++||++++++++.+.+|...  +
T Consensus       195 ~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~--v  272 (357)
T 4g56_B          195 TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQN--I  272 (357)
T ss_dssp             SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSC--E
T ss_pred             ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEecccee--E
Confidence             488999999999999998765432    23457999999997 467889999999999999999999999888644  4


Q ss_pred             eeeEecCCC-ceEEeecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772          232 TDCCLTNSD-AHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL  276 (277)
Q Consensus       232 ~~~~~~~~~-~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  276 (277)
                      ..++++|++ ++|++|+.|++|++||+++++++..+ +|...|+.+
T Consensus       273 ~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~v  317 (357)
T 4g56_B          273 TGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGV  317 (357)
T ss_dssp             EEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEE
T ss_pred             EEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEE
Confidence            556788876 67999999999999999999887655 798888764

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.1e-41  Score=275.74  Aligned_cols=247  Identities=19%  Similarity=0.275  Sum_probs=207.1

Q ss_pred             ccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 023772           10 EANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDV   89 (277)
Q Consensus        10 ~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~   89 (277)
                      ....+.+|..+|.+++|+|++++|++|+.|++|++||+.+++.+..+++|...|.+++|+|++++|++|+.|++|++||+
T Consensus        47 ~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~  126 (304)
T 2ynn_A           47 EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW  126 (304)
T ss_dssp             EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEG
T ss_pred             eeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEEC
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC-ceeEEeecccCceeEEEEec-CCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec----CCeEEEee
Q 023772           90 STG-RVIRKFRGHESEVNAVKFNE-YSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT----KTEIIGGS  163 (277)
Q Consensus        90 ~~~-~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~g~  163 (277)
                      +++ .+...+.+|...|.+++|+| ++.++++|+.|++|++||++..... ......+...+..+.+.    +..+++|+
T Consensus       127 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~s~s  205 (304)
T 2ynn_A          127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN-FTLTTGQERGVNYVDYYPLPDKPYMITAS  205 (304)
T ss_dssp             GGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCS-EEEECCCTTCEEEEEECCSTTCCEEEEEE
T ss_pred             CCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcc-ceeccCCcCcEEEEEEEEcCCCCEEEEEc
Confidence            887 55677899999999999999 5789999999999999999765432 22233444556666554    34699999


Q ss_pred             cCCcEEEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCc
Q 023772          164 VDGTVRTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDA  241 (277)
Q Consensus       164 ~d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (277)
                      .|++|++||+++++.+..  .+...|.+++|+|++.+|++|+.|++|++||.+++++++.+..|....  ..++++|++.
T Consensus       206 ~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~--~~~~~~~~~~  283 (304)
T 2ynn_A          206 DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERS--WCIATHPTGR  283 (304)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSE--EEEEECTTCG
T ss_pred             CCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccE--EEEEECCCCC
Confidence            999999999998876543  456789999999999999999999999999999999999998775433  3455667664


Q ss_pred             --eEEeecCCCeEEEEECcCc
Q 023772          242 --HVTGGSEDGYIYFWDLVDA  260 (277)
Q Consensus       242 --~l~sgs~d~~i~iwd~~~~  260 (277)
                        ++++|+.|| +.+|++.+.
T Consensus       284 ~~~~asg~~~g-~~~~~~~~~  303 (304)
T 2ynn_A          284 KNYIASGFDNG-FTVLSLGND  303 (304)
T ss_dssp             GGCEEEEETTE-EEEEECC--
T ss_pred             ceEEEEecCCc-eEEEEeccC
Confidence              588887665 668887653

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=5.7e-43  Score=286.48  Aligned_cols=259  Identities=14%  Similarity=0.197  Sum_probs=198.5

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCe--eEEEEeccCccEEEEEEcC--CCCEEEEEeCCCcEEE
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI--HIKTYKSHGREVRDVHVTA--DNSKLISCGGDRQIFY   86 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~--~~~~~~~h~~~v~~~~~~~--~~~~l~t~s~d~~v~~   86 (277)
                      ..++.+|+++|.+++|+|+|++|+||+.|++|++||+.++.  .+..+.+|.++|++++|++  ++++|++|+.|++|++
T Consensus         6 ~~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i   85 (316)
T 3bg1_A            6 NTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII   85 (316)
T ss_dssp             --------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred             eeecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence            44678999999999999999999999999999999998764  4678999999999999986  4789999999999999


Q ss_pred             EECCCC--ceeEEeecccCceeEEEEecC--CCEEEEEeCCCcEEEEeCccCCCc-ceEeeccccCcEEEEEecC-----
Q 023772           87 WDVSTG--RVIRKFRGHESEVNAVKFNEY--SSVVVSAGYDQSLRAWDCRSHSTE-PIQIIDSFQDSVMSVCLTK-----  156 (277)
Q Consensus        87 wd~~~~--~~~~~~~~h~~~v~~i~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~-----  156 (277)
                      ||++++  +....+.+|...|++++|+|+  +.+|++|+.|++|++||++..... .......|...+..+.+++     
T Consensus        86 Wd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  165 (316)
T 3bg1_A           86 WREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPG  165 (316)
T ss_dssp             ECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC-
T ss_pred             EECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCc
Confidence            999887  456778899999999999998  789999999999999998754211 1223344555565555554     


Q ss_pred             --------------CeEEEeecCCcEEEEEccCCc---cc--ccCCCCCeeEEEEeCCC----CEEEEEecCCeEEEEEC
Q 023772          157 --------------TEIIGGSVDGTVRTFDIRVGR---EL--SDDLGQPVNCISMSNDG----NCILASCLDSTLRLLDR  213 (277)
Q Consensus       157 --------------~~~~~g~~d~~i~i~d~~~~~---~~--~~~~~~~v~~~~~s~~~----~~l~~~~~d~~i~~wd~  213 (277)
                                    ..+++|+.|++|++||++...   ..  ...+...|++++|+|++    ++|++++.|++|++||+
T Consensus       166 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~  245 (316)
T 3bg1_A          166 SLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTC  245 (316)
T ss_dssp             -----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEEC
T ss_pred             cccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEc
Confidence                          368999999999999997542   22  22456689999999986    78999999999999998


Q ss_pred             CCC---c-eEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcC-c--cceeeeccCcc
Q 023772          214 STG---E-LLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVD-A--SVVAKFKAHSL  271 (277)
Q Consensus       214 ~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~-~--~~~~~~~~h~~  271 (277)
                      .+.   . ....+..|.  .....++++|++.+|++|+.|+.|++|+... +  .++..+...++
T Consensus       246 ~~~~~~~~~~~~~~~~~--~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~g~~~~~~~~~~~~~  308 (316)
T 3bg1_A          246 DDASSNTWSPKLLHKFN--DVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQG  308 (316)
T ss_dssp             SSTTCCCCBCCEEEECS--SCEEEEEECTTTCCEEEEESSSCEEEEEECTTSCEEEEEECC----
T ss_pred             cCccccchhhhhhhcCC--CcEEEEEEcCCCCEEEEEcCCCeEEEEEECCCCcEEEeeeccCCCC
Confidence            762   1 122344453  3345678999999999999999999999763 3  44555654443

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.6e-41  Score=301.13  Aligned_cols=261  Identities=18%  Similarity=0.298  Sum_probs=219.1

Q ss_pred             cccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC--eeEEEEeccCccEEEEEEcCCCCEEEEEeCC----C
Q 023772            9 TEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG--IHIKTYKSHGREVRDVHVTADNSKLISCGGD----R   82 (277)
Q Consensus         9 ~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d----~   82 (277)
                      .....+.+|.+.|.+++|+|+|++|+||+.|++|||||+.++  .....+.+|.++|.+++|+|++++|++++.+    +
T Consensus        50 ~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~  129 (611)
T 1nr0_A           50 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFG  129 (611)
T ss_dssp             SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSE
T ss_pred             ccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCcee
Confidence            345668899999999999999999999999999999998654  3456788999999999999999999998875    4


Q ss_pred             cEEEEECCCCceeEEeecccCceeEEEEecCCC-EEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC--eE
Q 023772           83 QIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSS-VVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--EI  159 (277)
Q Consensus        83 ~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  159 (277)
                      .|++||  +++...++.+|...|++++|+|++. .+++++.|++|++||....  +....+..|...+.++.++++  .+
T Consensus       130 ~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~--~~~~~l~~H~~~V~~v~fspdg~~l  205 (611)
T 1nr0_A          130 HVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF--KFKSTFGEHTKFVHSVRYNPDGSLF  205 (611)
T ss_dssp             EEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB--EEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             EEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC--eEeeeeccccCceEEEEECCCCCEE
Confidence            788887  4667778899999999999999986 6999999999999997653  334567788889999988764  59


Q ss_pred             EEeecCCcEEEEEccCCccccc---------CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEe-------
Q 023772          160 IGGSVDGTVRTFDIRVGRELSD---------DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYK-------  223 (277)
Q Consensus       160 ~~g~~d~~i~i~d~~~~~~~~~---------~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-------  223 (277)
                      ++|+.|++|++||+.+++....         .+...|.+++|+|+|++|++++.|++|++||+.+++++..+.       
T Consensus       206 as~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~  285 (611)
T 1nr0_A          206 ASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIED  285 (611)
T ss_dssp             EEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGG
T ss_pred             EEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccc
Confidence            9999999999999987754321         356789999999999999999999999999999887765543       


Q ss_pred             ------------------------------------ccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeee-
Q 023772          224 ------------------------------------GHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKF-  266 (277)
Q Consensus       224 ------------------------------------~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~-  266 (277)
                                                          +|.  .....++++|++++|++|+.|+.|++||+.++++...+ 
T Consensus       286 ~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~--~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~  363 (611)
T 1nr0_A          286 QQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHN--KAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP  363 (611)
T ss_dssp             CEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSS
T ss_pred             eeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCC--CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecc
Confidence                                                332  23456788999999999999999999999999887766 


Q ss_pred             ccCcceeEe
Q 023772          267 KAHSLVVKL  275 (277)
Q Consensus       267 ~~h~~~v~~  275 (277)
                      .+|...|..
T Consensus       364 ~~h~~~v~~  372 (611)
T 1nr0_A          364 DVHATMITG  372 (611)
T ss_dssp             CSCSSCEEE
T ss_pred             cCCcceEEE
Confidence            467766543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.3e-41  Score=281.80  Aligned_cols=252  Identities=18%  Similarity=0.319  Sum_probs=204.7

Q ss_pred             eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC--eeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 023772           14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG--IHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVST   91 (277)
Q Consensus        14 l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~   91 (277)
                      ..+|.++|.+++|+|+|++|++|+.|+++++||..++  +++..+.+|..+|.+++|+|++++|++|+.|++|++||+.+
T Consensus        57 ~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~  136 (345)
T 3fm0_A           57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE  136 (345)
T ss_dssp             CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECT
T ss_pred             ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCC
Confidence            4689999999999999999999999999999998766  45788999999999999999999999999999999999987


Q ss_pred             C---ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC--eEEEeecCC
Q 023772           92 G---RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--EIIGGSVDG  166 (277)
Q Consensus        92 ~---~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~  166 (277)
                      +   +++..+..|...|.+++|+|++++|++++.|++|++||.+.........+..|...+.++.++++  .+++|+.|+
T Consensus       137 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~  216 (345)
T 3fm0_A          137 EDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDR  216 (345)
T ss_dssp             TSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCC
Confidence            6   34667889999999999999999999999999999999876543444567788889999888764  599999999


Q ss_pred             cEEEEEccCCccc------------------ccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCc----eE-----
Q 023772          167 TVRTFDIRVGREL------------------SDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGE----LL-----  219 (277)
Q Consensus       167 ~i~i~d~~~~~~~------------------~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~----~~-----  219 (277)
                      +|++||.......                  ...+...|.+++|+|++..|++++.|+.|++|+...+.    ..     
T Consensus       217 ~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~  296 (345)
T 3fm0_A          217 TVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTA  296 (345)
T ss_dssp             CEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEE
T ss_pred             eEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEe
Confidence            9999997532110                  11245679999999999999999999999999986542    11     


Q ss_pred             EEEeccccceeeeeeEecCCC-ceEEeecCCCeEEEEECcCccceeeec
Q 023772          220 QEYKGHICKSFKTDCCLTNSD-AHVTGGSEDGYIYFWDLVDASVVAKFK  267 (277)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~-~~l~sgs~d~~i~iwd~~~~~~~~~~~  267 (277)
                      ..+.+|..  .+..++++|++ .+|++|+.||.|++|++.+++....+.
T Consensus       297 ~~~~~h~~--~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~~  343 (345)
T 3fm0_A          297 HLHQAHSQ--DVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHHH  343 (345)
T ss_dssp             EETTSSSS--CEEEEEECSSSTTEEEEEETTSCEEEEEECC--------
T ss_pred             eecccccC--cEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCccccc
Confidence            11234543  35667789987 589999999999999999987765554

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.9e-41  Score=276.62  Aligned_cols=261  Identities=18%  Similarity=0.205  Sum_probs=204.5

Q ss_pred             ccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC--eeEEEE-ec-cCccEEEEEEcCCCCEEEEEeCCCcEE
Q 023772           10 EANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG--IHIKTY-KS-HGREVRDVHVTADNSKLISCGGDRQIF   85 (277)
Q Consensus        10 ~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~--~~~~~~-~~-h~~~v~~~~~~~~~~~l~t~s~d~~v~   85 (277)
                      ....+.+|.++|.+++|+++  +|++|+.|++|++||+.++  .....+ .. |..+|.+++|+|++++|++|+.|++|+
T Consensus         6 ~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~   83 (330)
T 2hes_X            6 LIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVS   83 (330)
T ss_dssp             EEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             cceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEE
Confidence            35678999999999999987  9999999999999999875  445556 34 999999999999999999999999999


Q ss_pred             EEECCC-------CceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCC--CcceEeeccccCcEEEEEecC
Q 023772           86 YWDVST-------GRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHS--TEPIQIIDSFQDSVMSVCLTK  156 (277)
Q Consensus        86 ~wd~~~-------~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~  156 (277)
                      +||++.       .+++..+.+|..+|.+++|+|++++|++|+.|++|++||++...  .+....+..|...+..+.+++
T Consensus        84 iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p  163 (330)
T 2hes_X           84 IWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP  163 (330)
T ss_dssp             EEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS
T ss_pred             EEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC
Confidence            999853       35677889999999999999999999999999999999985322  233455677888898888875


Q ss_pred             --CeEEEeecCCcEEEEEccCC--ccc--ccCCCCCeeEEEEeCC--CCEEEEEecCCeEEEEECCCC--------ceEE
Q 023772          157 --TEIIGGSVDGTVRTFDIRVG--REL--SDDLGQPVNCISMSND--GNCILASCLDSTLRLLDRSTG--------ELLQ  220 (277)
Q Consensus       157 --~~~~~g~~d~~i~i~d~~~~--~~~--~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~~wd~~~~--------~~~~  220 (277)
                        ..+++|+.|++|++||.+.+  +.+  ...+...|.+++|+|+  +.+|++++.|++|++||+..+        .+..
T Consensus       164 ~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~  243 (330)
T 2hes_X          164 SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEA  243 (330)
T ss_dssp             SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEee
Confidence              45999999999999998765  222  2345678999999998  778999999999999998654        3344


Q ss_pred             EEec-cccceeeeeeEecCCCceEEeecCCCeEEEEECcCcc--cee-eeccCcc-eeEe
Q 023772          221 EYKG-HICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDAS--VVA-KFKAHSL-VVKL  275 (277)
Q Consensus       221 ~~~~-~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~--~~~-~~~~h~~-~v~~  275 (277)
                      .+.+ |..  ....++++++ .++++|+.||.|++||..+++  ... .+.+|.. .|..
T Consensus       244 ~~~~~h~~--~v~~v~~s~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~  300 (330)
T 2hes_X          244 ILPDVHKR--QVYNVAWGFN-GLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINV  300 (330)
T ss_dssp             ECCSCCSS--CEEEEEECTT-SCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEE
T ss_pred             eccccccc--ceEEEEEcCC-CEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEE
Confidence            4443 533  3455667754 489999999999999998874  333 3457765 5543

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.3e-41  Score=300.24  Aligned_cols=263  Identities=17%  Similarity=0.288  Sum_probs=217.8

Q ss_pred             cceeeccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 023772           11 ANVLKGHEGAVLAARFNGDGN-YCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDV   89 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~   89 (277)
                      ...+.+|.++|++++|+|++. .|+||+.|++|++||..++++..++.+|...|++++|+|++++|++++.|++|++||+
T Consensus       140 ~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~  219 (611)
T 1nr0_A          140 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNG  219 (611)
T ss_dssp             CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEEC
Confidence            345789999999999999987 5999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeEEee-------cccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCc-------------------------
Q 023772           90 STGRVIRKFR-------GHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTE-------------------------  137 (277)
Q Consensus        90 ~~~~~~~~~~-------~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-------------------------  137 (277)
                      .+++++..+.       +|...|.+++|+|++++|++++.|++|++||+++....                         
T Consensus       220 ~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  299 (611)
T 1nr0_A          220 VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVS  299 (611)
T ss_dssp             TTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEE
T ss_pred             CCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEE
Confidence            9999888884       79999999999999999999999999999998753211                         


Q ss_pred             ----------------ceEeeccccCcEEEEEecC--CeEEEeecCCcEEEEEccCCccccc------------------
Q 023772          138 ----------------PIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVGRELSD------------------  181 (277)
Q Consensus       138 ----------------~~~~~~~~~~~~~~~~~~~--~~~~~g~~d~~i~i~d~~~~~~~~~------------------  181 (277)
                                      ....+..|...+.++.+++  ..+++++.|++|++||+.+++....                  
T Consensus       300 ~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~  379 (611)
T 1nr0_A          300 ISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG  379 (611)
T ss_dssp             EETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS
T ss_pred             EeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCC
Confidence                            1122345677788888765  4599999999999999875432100                  


Q ss_pred             ------------------------------------------------------------------CCCCCeeEEEEeCC
Q 023772          182 ------------------------------------------------------------------DLGQPVNCISMSND  195 (277)
Q Consensus       182 ------------------------------------------------------------------~~~~~v~~~~~s~~  195 (277)
                                                                                        .+...+.+++|+|+
T Consensus       380 ~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spd  459 (611)
T 1nr0_A          380 DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSND  459 (611)
T ss_dssp             CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTT
T ss_pred             cEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCC
Confidence                                                                              00124678999999


Q ss_pred             CCEEEEEecCCeEEEEECCCCce--EEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcC-ccceee--eccCc
Q 023772          196 GNCILASCLDSTLRLLDRSTGEL--LQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVD-ASVVAK--FKAHS  270 (277)
Q Consensus       196 ~~~l~~~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~-~~~~~~--~~~h~  270 (277)
                      |++|++|+.|++|++||+..++.  +.. .+|.  ..+..++|+|++++|++++.|++|++||+.+ ++++..  +.+|.
T Consensus       460 g~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~--~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~  536 (611)
T 1nr0_A          460 KQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHP--AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHT  536 (611)
T ss_dssp             SCEEEEEETTSEEEEEEEETTEEEEEEE-EECS--SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCS
T ss_pred             CCEEEEeCCCCeEEEEEccCCceeeeec-cCCC--CceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecc
Confidence            99999999999999999987654  233 4554  3456678999999999999999999999998 666654  34598


Q ss_pred             ceeEee
Q 023772          271 LVVKLL  276 (277)
Q Consensus       271 ~~v~~~  276 (277)
                      ..|..+
T Consensus       537 ~~V~~v  542 (611)
T 1nr0_A          537 AKVACV  542 (611)
T ss_dssp             SCEEEE
T ss_pred             cceeEE
Confidence            877654

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-41  Score=279.04  Aligned_cols=242  Identities=20%  Similarity=0.343  Sum_probs=193.2

Q ss_pred             ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCC-------CeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023772           16 GHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHR-------GIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWD   88 (277)
Q Consensus        16 ~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd   88 (277)
                      +|.++|.+++|+|++++|++|+.|++|++||...       .+.+..+.+|...|.+++|+|++++|++|+.|++|++||
T Consensus        56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd  135 (330)
T 2hes_X           56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE  135 (330)
T ss_dssp             CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence            3999999999999999999999999999999842       356778899999999999999999999999999999999


Q ss_pred             CCC----CceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC----eEE
Q 023772           89 VST----GRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT----EII  160 (277)
Q Consensus        89 ~~~----~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  160 (277)
                      +..    .+++..+.+|...|.++.|+|++++|++++.|++|++||.+....+....+..|...+..+.+++.    .++
T Consensus       136 ~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~  215 (330)
T 2hes_X          136 TDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLC  215 (330)
T ss_dssp             CCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEE
T ss_pred             ccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEE
Confidence            943    256778899999999999999999999999999999999875433456667788889999998875    489


Q ss_pred             EeecCCcEEEEEccCCc--------cc---ccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCc--eEEE-Eeccc
Q 023772          161 GGSVDGTVRTFDIRVGR--------EL---SDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGE--LLQE-YKGHI  226 (277)
Q Consensus       161 ~g~~d~~i~i~d~~~~~--------~~---~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~--~~~~-~~~~~  226 (277)
                      +|+.|++|++||++.+.        ..   ...+...|.+++|++++ +|++++.|+.|++||..+++  .... +.+|.
T Consensus       216 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~  294 (330)
T 2hes_X          216 SGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHG  294 (330)
T ss_dssp             EEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTT
T ss_pred             EEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccc
Confidence            99999999999997542        11   11256789999999766 78999999999999998764  2322 24453


Q ss_pred             cceeeeeeEecC--CCceEEeecCCCeEEEEECcC
Q 023772          227 CKSFKTDCCLTN--SDAHVTGGSEDGYIYFWDLVD  259 (277)
Q Consensus       227 ~~~~~~~~~~~~--~~~~l~sgs~d~~i~iwd~~~  259 (277)
                      .. ....++++|  ++.+|++|+.||.|++||+++
T Consensus       295 ~~-~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          295 VY-EINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             TS-CEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             cc-eEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            21 234456777  688999999999999999875

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=9.3e-41  Score=277.52  Aligned_cols=242  Identities=21%  Similarity=0.331  Sum_probs=212.0

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC------eeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcE
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG------IHIKTYKSHGREVRDVHVTADNSKLISCGGDRQI   84 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~------~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v   84 (277)
                      ...+..|...|.+++|+|+|.++++++.|+.+++|++...      .....+..|...|.++.|+|++..|++++.|++|
T Consensus        99 ~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v  178 (354)
T 2pbi_B           99 EHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTC  178 (354)
T ss_dssp             EEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred             ceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcE
Confidence            4456789999999999999999999999999999987542      3456778899999999999999999999999999


Q ss_pred             EEEECCCCceeEEeecccCceeEEEEec--CCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEE
Q 023772           85 FYWDVSTGRVIRKFRGHESEVNAVKFNE--YSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEII  160 (277)
Q Consensus        85 ~~wd~~~~~~~~~~~~h~~~v~~i~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  160 (277)
                      ++||+++++++.++.+|...|.++++.|  ++++|++|+.||+|++||+++..  ....+..|...+.++.+++  ..++
T Consensus       179 ~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~--~~~~~~~h~~~v~~v~~~p~~~~l~  256 (354)
T 2pbi_B          179 ALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ--CVQAFETHESDVNSVRYYPSGDAFA  256 (354)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             EEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc--EEEEecCCCCCeEEEEEeCCCCEEE
Confidence            9999999999999999999999999987  46899999999999999998653  4556677888898888865  5699


Q ss_pred             EeecCCcEEEEEccCCcccccC----CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEe
Q 023772          161 GGSVDGTVRTFDIRVGRELSDD----LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCL  236 (277)
Q Consensus       161 ~g~~d~~i~i~d~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  236 (277)
                      +|+.|++|++||++..+.+...    ....+.+++|+|++.+|++|+.|+.|++||+.+++.+..+.+|...  +..+++
T Consensus       257 s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~--v~~l~~  334 (354)
T 2pbi_B          257 SGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENR--VSTLRV  334 (354)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSC--EEEEEE
T ss_pred             EEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCc--EEEEEE
Confidence            9999999999999887654321    2246889999999999999999999999999999999999888643  466789


Q ss_pred             cCCCceEEeecCCCeEEEEE
Q 023772          237 TNSDAHVTGGSEDGYIYFWD  256 (277)
Q Consensus       237 ~~~~~~l~sgs~d~~i~iwd  256 (277)
                      +|++.+|++|+.|+.|++|+
T Consensus       335 spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          335 SPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             CTTSSCEEEEETTSEEEEEC
T ss_pred             CCCCCEEEEEcCCCCEEecC
Confidence            99999999999999999996

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=8e-40  Score=269.35  Aligned_cols=252  Identities=23%  Similarity=0.365  Sum_probs=212.7

Q ss_pred             cceeeccCCcEEEEEEeCC-CCEEEEEeCCCcEEEEcCCCC-----eeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcE
Q 023772           11 ANVLKGHEGAVLAARFNGD-GNYCLSCGKDRTIRLWNPHRG-----IHIKTYKSHGREVRDVHVTADNSKLISCGGDRQI   84 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~-~~~l~s~s~d~~v~iwd~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v   84 (277)
                      ..+|+||.++|++++|+|+ +++|+|||.|++|+|||+.++     .+...+.+|...|.+++|+|++++|++++.|+.|
T Consensus        31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i  110 (340)
T 4aow_A           31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTL  110 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccc
Confidence            3468999999999999997 689999999999999997653     4567889999999999999999999999999999


Q ss_pred             EEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC----eEE
Q 023772           85 FYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT----EII  160 (277)
Q Consensus        85 ~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  160 (277)
                      ++|+............+...+..+.+.++++.+++++.|+.+++||..... ........+...+..+.+.+.    .++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~  189 (340)
T 4aow_A          111 RLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC-KYTVQDESHSEWVSCVRFSPNSSNPIIV  189 (340)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE-EEEECSSSCSSCEEEEEECSCSSSCEEE
T ss_pred             eEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCc-eEEEEeccccCcccceEEccCCCCcEEE
Confidence            999999999888888899999999999999999999999999999986532 223334456667777766532    378


Q ss_pred             EeecCCcEEEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecC
Q 023772          161 GGSVDGTVRTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN  238 (277)
Q Consensus       161 ~g~~d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (277)
                      +++.|+.|++||++.++....  .+..+|++++|+|++++|++|+.|+.|++||+++.+++..+.++.   ....++++|
T Consensus       190 s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~---~v~~~~~~~  266 (340)
T 4aow_A          190 SCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD---IINALCFSP  266 (340)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSS---CEEEEEECS
T ss_pred             EEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCc---eEEeeecCC
Confidence            899999999999998775543  356789999999999999999999999999999999998887663   345566788


Q ss_pred             CCceEEeecCCCeEEEEECcCccceeeec
Q 023772          239 SDAHVTGGSEDGYIYFWDLVDASVVAKFK  267 (277)
Q Consensus       239 ~~~~l~sgs~d~~i~iwd~~~~~~~~~~~  267 (277)
                      ++.+ ++++.|+.|++||++++.++..++
T Consensus       267 ~~~~-~~~~~d~~i~iwd~~~~~~~~~~~  294 (340)
T 4aow_A          267 NRYW-LCAATGPSIKIWDLEGKIIVDELK  294 (340)
T ss_dssp             SSSE-EEEEETTEEEEEETTTTEEEEEEC
T ss_pred             CCce-eeccCCCEEEEEECCCCeEEEecc
Confidence            7654 556679999999999988777665

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-40  Score=277.65  Aligned_cols=250  Identities=17%  Similarity=0.228  Sum_probs=213.1

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCC--CCeeEEEEeccCccEEEEEEcCC--CCEEEEEeCCCcEEE
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPH--RGIHIKTYKSHGREVRDVHVTAD--NSKLISCGGDRQIFY   86 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~--~~~~~~~~~~h~~~v~~~~~~~~--~~~l~t~s~d~~v~~   86 (277)
                      ..++.+|.++|++++|+|++++|++|+.|+.|++||+.  +++....+.+|..+|++++|+++  +++|++++.|+.|++
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i   83 (379)
T 3jrp_A            4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   83 (379)
T ss_dssp             -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred             cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence            45789999999999999999999999999999999987  56777889999999999999977  899999999999999


Q ss_pred             EECCCCc--eeEEeecccCceeEEEEecC--CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC------
Q 023772           87 WDVSTGR--VIRKFRGHESEVNAVKFNEY--SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK------  156 (277)
Q Consensus        87 wd~~~~~--~~~~~~~h~~~v~~i~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~------  156 (277)
                      ||+.+++  .+..+..|...|.+++|+|+  +.++++++.|+.|++||++.........+..+...+..+.+.+      
T Consensus        84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  163 (379)
T 3jrp_A           84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED  163 (379)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred             EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence            9999987  77788889999999999999  9999999999999999998765555556677888888888875      


Q ss_pred             ---------CeEEEeecCCcEEEEEccCCccc------ccCCCCCeeEEEEeCC---CCEEEEEecCCeEEEEECCCCc-
Q 023772          157 ---------TEIIGGSVDGTVRTFDIRVGREL------SDDLGQPVNCISMSND---GNCILASCLDSTLRLLDRSTGE-  217 (277)
Q Consensus       157 ---------~~~~~g~~d~~i~i~d~~~~~~~------~~~~~~~v~~~~~s~~---~~~l~~~~~d~~i~~wd~~~~~-  217 (277)
                               ..+++++.|+.|++||++.+...      ...+..+|.+++|+|+   +++|++++.|+.|++||++++. 
T Consensus       164 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~  243 (379)
T 3jrp_A          164 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG  243 (379)
T ss_dssp             ------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS
T ss_pred             ccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc
Confidence                     45999999999999999876422      1235678999999999   8999999999999999998764 


Q ss_pred             --eEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCc
Q 023772          218 --LLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDA  260 (277)
Q Consensus       218 --~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~  260 (277)
                        ....+...........++++|++.+|++++.||.|++||+..+
T Consensus       244 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          244 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             CCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred             cceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence              2222222112334566789999999999999999999999854

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.7e-40  Score=273.55  Aligned_cols=244  Identities=20%  Similarity=0.334  Sum_probs=201.6

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~   90 (277)
                      ...+.+|.++|.+++|+|++.+++||+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+.
T Consensus        69 ~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~  148 (343)
T 2xzm_R           69 HKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL  148 (343)
T ss_dssp             EEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS
T ss_pred             cchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             CCceeEEee---cccCceeEEEEecCC----------CEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC
Q 023772           91 TGRVIRKFR---GHESEVNAVKFNEYS----------SVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT  157 (277)
Q Consensus        91 ~~~~~~~~~---~h~~~v~~i~~~~~~----------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (277)
                      .. ......   .|...|.++.|+|++          .++++++.|++|++||..   ......+..|...+..+.++++
T Consensus       149 ~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~---~~~~~~~~~h~~~v~~~~~s~~  224 (343)
T 2xzm_R          149 GE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN---FQIRYTFKAHESNVNHLSISPN  224 (343)
T ss_dssp             SC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT---TEEEEEEECCSSCEEEEEECTT
T ss_pred             CC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC---CceeEEEcCccccceEEEECCC
Confidence            43 333333   788999999999986          789999999999999943   2334456677888888888754


Q ss_pred             --eEEEeecCCcEEEEEccCCcc-ccc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEE--EEe--------
Q 023772          158 --EIIGGSVDGTVRTFDIRVGRE-LSD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQ--EYK--------  223 (277)
Q Consensus       158 --~~~~g~~d~~i~i~d~~~~~~-~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~--~~~--------  223 (277)
                        .+++|+.|+.|++||++.... ... .....|++++|+|++.+++ ++.|+.+++||+.+++...  .+.        
T Consensus       225 g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~  303 (343)
T 2xzm_R          225 GKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAE  303 (343)
T ss_dssp             SSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBT
T ss_pred             CCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhh
Confidence              599999999999999954332 211 2456799999999998765 5568889999998766543  333        


Q ss_pred             ---ccccceeeeeeEecCCCceEEeecCCCeEEEEECcCcc
Q 023772          224 ---GHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDAS  261 (277)
Q Consensus       224 ---~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~  261 (277)
                         +|.  .....++++|++.+|++|+.||.|++|+++++.
T Consensus       304 ~~~~~~--~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          304 GQKGKN--PQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA  342 (343)
T ss_dssp             TBCCSC--CCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred             hhcCCC--CceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence               232  234567899999999999999999999998763

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=2.1e-40  Score=273.22  Aligned_cols=259  Identities=9%  Similarity=0.108  Sum_probs=223.8

Q ss_pred             eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCe---eEEEEeccCccEEEEEEcCCCC-EEEEEeCCCcEEEEE
Q 023772           13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI---HIKTYKSHGREVRDVHVTADNS-KLISCGGDRQIFYWD   88 (277)
Q Consensus        13 ~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~d~~v~~wd   88 (277)
                      +..+|.++|.+++|+|++++|++++.|+.|++||+.++.   ....+..|...|.+++|+|+++ +|++++.|+.|++||
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd   85 (342)
T 1yfq_A            6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD   85 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred             cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence            446899999999999999999999999999999988766   3556668999999999999999 999999999999999


Q ss_pred             C-CCCceeEEeec--ccCceeEEEEecCCCEEEEEeCCCcEEEEeCcc---------CCCcceEeeccccCcEEEEEecC
Q 023772           89 V-STGRVIRKFRG--HESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRS---------HSTEPIQIIDSFQDSVMSVCLTK  156 (277)
Q Consensus        89 ~-~~~~~~~~~~~--h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~---------~~~~~~~~~~~~~~~~~~~~~~~  156 (277)
                      + ++++. ..+..  |...|.+++|+| ++++++++.|+.|++||++.         ...  ...+. +...+..+.+++
T Consensus        86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~-~~~~v~~~~~~~  160 (342)
T 1yfq_A           86 LIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN--SNNTK-VKNKIFTMDTNS  160 (342)
T ss_dssp             SSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESC--SSSSS-SCCCEEEEEECS
T ss_pred             eccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCe--eeEEe-eCCceEEEEecC
Confidence            9 87765 67888  999999999999 99999999999999999875         332  22223 677889999999


Q ss_pred             CeEEEeecCCcEEEEEccC-Ccc----cccCCCCCeeEEEEeC-CCCEEEEEecCCeEEEEECCCC------ceEEEEec
Q 023772          157 TEIIGGSVDGTVRTFDIRV-GRE----LSDDLGQPVNCISMSN-DGNCILASCLDSTLRLLDRSTG------ELLQEYKG  224 (277)
Q Consensus       157 ~~~~~g~~d~~i~i~d~~~-~~~----~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~wd~~~~------~~~~~~~~  224 (277)
                      +.+++++.|+.|++||++. +..    ....+...+.+++|+| +++++++++.||.+++|++...      +....+..
T Consensus       161 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~  240 (342)
T 1yfq_A          161 SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC  240 (342)
T ss_dssp             SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred             CcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeec
Confidence            9999999999999999987 442    2234566899999999 9999999999999999999876      77778887


Q ss_pred             ccc-------ceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccC-cceeEee
Q 023772          225 HIC-------KSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAH-SLVVKLL  276 (277)
Q Consensus       225 ~~~-------~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h-~~~v~~~  276 (277)
                      |..       ......++++|++++|++|+.||.|++||+.+++++..+++| ...|..+
T Consensus       241 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~  300 (342)
T 1yfq_A          241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKI  300 (342)
T ss_dssp             CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEE
T ss_pred             ccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEe
Confidence            743       124566789999999999999999999999999999999998 8888764

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=4.8e-40  Score=276.96  Aligned_cols=239  Identities=21%  Similarity=0.353  Sum_probs=200.5

Q ss_pred             CcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe
Q 023772           19 GAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKF   98 (277)
Q Consensus        19 ~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~   98 (277)
                      ..|.+++|+|+|++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||++++++...+
T Consensus       124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~  203 (393)
T 1erj_A          124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL  203 (393)
T ss_dssp             CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE
Confidence            35999999999999999999999999999999999999999999999999999999999999999999999999988777


Q ss_pred             ecccCceeEEEEec-CCCEEEEEeCCCcEEEEeCccCCCcceE-----eeccccCcEEEEEecC--CeEEEeecCCcEEE
Q 023772           99 RGHESEVNAVKFNE-YSSVVVSAGYDQSLRAWDCRSHSTEPIQ-----IIDSFQDSVMSVCLTK--TEIIGGSVDGTVRT  170 (277)
Q Consensus        99 ~~h~~~v~~i~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~--~~~~~g~~d~~i~i  170 (277)
                      . +...+.+++++| +++++++|+.|++|++||++........     ....|...+.++.+++  ..+++|+.|++|++
T Consensus       204 ~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~  282 (393)
T 1erj_A          204 S-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL  282 (393)
T ss_dssp             E-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             E-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence            6 567899999999 8999999999999999998764321111     1135677888888865  45999999999999


Q ss_pred             EEccCCccc--------------ccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEe
Q 023772          171 FDIRVGREL--------------SDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCL  236 (277)
Q Consensus       171 ~d~~~~~~~--------------~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  236 (277)
                      ||++.....              ...+...|.+++|+|++.+|++|+.|+.|++||.++++++..+.+|.....  .+++
T Consensus       283 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~--~v~~  360 (393)
T 1erj_A          283 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVI--SVAV  360 (393)
T ss_dssp             EEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE--EEEE
T ss_pred             EECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEE--EEEe
Confidence            999764321              113456799999999999999999999999999999999999999865443  3344


Q ss_pred             c------CCCceEEeecCCCeEEEEECcCc
Q 023772          237 T------NSDAHVTGGSEDGYIYFWDLVDA  260 (277)
Q Consensus       237 ~------~~~~~l~sgs~d~~i~iwd~~~~  260 (277)
                      +      |++.++++|+.||.|++|++.+.
T Consensus       361 ~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          361 ANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             CSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             cCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            4      47889999999999999998654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-39  Score=268.22  Aligned_cols=262  Identities=20%  Similarity=0.331  Sum_probs=226.7

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~   90 (277)
                      ...+.+|.++|++++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||++
T Consensus        25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~  104 (369)
T 3zwl_B           25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS  104 (369)
T ss_dssp             EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred             cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeEEeecccCceeEEEEecCCCEEEEEeCC-----CcEEEEeCccCCCc---------ceEeeccccC--cEEEEEe
Q 023772           91 TGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYD-----QSLRAWDCRSHSTE---------PIQIIDSFQD--SVMSVCL  154 (277)
Q Consensus        91 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~---------~~~~~~~~~~--~~~~~~~  154 (277)
                      +++++..+. |..+|.++.|+|+++.+++++.+     +.|++||+......         ....+..+..  .+..+.+
T Consensus       105 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (369)
T 3zwl_B          105 NGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGW  183 (369)
T ss_dssp             TCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEE
T ss_pred             CCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEE
Confidence            999998888 88999999999999999999999     99999998765321         1222222333  5666666


Q ss_pred             cC--CeEEEeecCCcEEEEEccC-Ccccc--cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccce
Q 023772          155 TK--TEIIGGSVDGTVRTFDIRV-GRELS--DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKS  229 (277)
Q Consensus       155 ~~--~~~~~g~~d~~i~i~d~~~-~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~  229 (277)
                      ++  ..+++++.|+.|++||++. .+.+.  ..+...+.+++|+|++++|++++.|+.|++||+++++.+..+...   .
T Consensus       184 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~---~  260 (369)
T 3zwl_B          184 STKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETD---C  260 (369)
T ss_dssp             CGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS---S
T ss_pred             cCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCC---C
Confidence            54  5699999999999999987 34332  235678999999999999999999999999999999998888733   3


Q ss_pred             eeeeeEecCCCceEEeecCCC--------------eEEEEECcCccceeeeccCcceeEee
Q 023772          230 FKTDCCLTNSDAHVTGGSEDG--------------YIYFWDLVDASVVAKFKAHSLVVKLL  276 (277)
Q Consensus       230 ~~~~~~~~~~~~~l~sgs~d~--------------~i~iwd~~~~~~~~~~~~h~~~v~~~  276 (277)
                      ....++++|++.++++++.++              .+++||..+++.+..+++|...|..+
T Consensus       261 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~  321 (369)
T 3zwl_B          261 PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTV  321 (369)
T ss_dssp             CEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             CceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEE
Confidence            345677899999999999888              89999999999999999999888754

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.4e-39  Score=286.48  Aligned_cols=261  Identities=25%  Similarity=0.452  Sum_probs=217.8

Q ss_pred             cccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023772            9 TEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWD   88 (277)
Q Consensus         9 ~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd   88 (277)
                      +|.+.|.||+++|++++|+|||++|+||+.|++|+|||. ++++++++.+|..+|++++|+|++++|++++.|++|++||
T Consensus         7 ~e~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd   85 (577)
T 2ymu_A            7 KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN   85 (577)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             EEeeEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            566779999999999999999999999999999999995 7788999999999999999999999999999999999999


Q ss_pred             CCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCc-------------------------------
Q 023772           89 VSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTE-------------------------------  137 (277)
Q Consensus        89 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-------------------------------  137 (277)
                      . +++++.++.+|..+|.+++|+|+++++++++.|+.+++|+.......                               
T Consensus        86 ~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  164 (577)
T 2ymu_A           86 R-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK  164 (577)
T ss_dssp             T-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred             C-CCCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceeccccccee
Confidence            6 57888899999999999999999999999999999999996432100                               


Q ss_pred             -------ceEeeccccCcEEEEEecC--CeEEEeecCCcEEEEEccCCcccc--cCCCCCeeEEEEeCCCCEEEEEecCC
Q 023772          138 -------PIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVGRELS--DDLGQPVNCISMSNDGNCILASCLDS  206 (277)
Q Consensus       138 -------~~~~~~~~~~~~~~~~~~~--~~~~~g~~d~~i~i~d~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d~  206 (277)
                             .......+...+..+.+.+  ..+++++.|+.|++||... +.+.  ..+...+.+++|+|++++|++++.|+
T Consensus       165 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~-~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~  243 (577)
T 2ymu_A          165 LWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDK  243 (577)
T ss_dssp             EECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS-CEEEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred             ccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCC-cEEEEEecCCCCEEEEEECCCCCEEEEEeCCC
Confidence                   0011112334455555554  4589999999999999643 3222  24567899999999999999999999


Q ss_pred             eEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772          207 TLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL  276 (277)
Q Consensus       207 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  276 (277)
                      .|++||. +++.+..+.+|...  ...++++|++.++++++.|+.|++||. +++++..+.+|...|..+
T Consensus       244 ~i~~w~~-~~~~~~~~~~~~~~--v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~  309 (577)
T 2ymu_A          244 TVKLWNR-NGQLLQTLTGHSSS--VNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGV  309 (577)
T ss_dssp             CEEEECT-TSCEEEEECCCSSC--EEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEE
T ss_pred             EEEEEeC-CCCEEEEEecCCCC--EEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEE
Confidence            9999996 46778888888543  455678999999999999999999996 467888999998877654

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=4.8e-40  Score=295.74  Aligned_cols=254  Identities=24%  Similarity=0.381  Sum_probs=215.5

Q ss_pred             ceeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEcCCC-----CeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEE
Q 023772           12 NVLKGHEGAVLAARFNGDG-NYCLSCGKDRTIRLWNPHR-----GIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIF   85 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~~~-~~l~s~s~d~~v~iwd~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~   85 (277)
                      ..+++|.+.|++++|++++ ++|+|||.|++|++||+.+     +...+.+.+|...|.+++|+|++++|++|+.|++|+
T Consensus       376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~  455 (694)
T 3dm0_A          376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR  455 (694)
T ss_dssp             EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEE
Confidence            4578999999999999864 7999999999999999865     345678899999999999999999999999999999


Q ss_pred             EEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceE-eeccccCcEEEEEecCC----eEE
Q 023772           86 YWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQ-IIDSFQDSVMSVCLTKT----EII  160 (277)
Q Consensus        86 ~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~  160 (277)
                      +||+.+++.++.+.+|...|.+++|+|++++|++++.|++|++||.......... ....|...+.++.++++    .++
T Consensus       456 vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~  535 (694)
T 3dm0_A          456 LWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIV  535 (694)
T ss_dssp             EEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEE
T ss_pred             EEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEE
Confidence            9999999999999999999999999999999999999999999997542111110 11346667888888764    489


Q ss_pred             EeecCCcEEEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecC
Q 023772          161 GGSVDGTVRTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN  238 (277)
Q Consensus       161 ~g~~d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (277)
                      +|+.|++|++||++.++....  .+...|++++|+|++++|++++.|+.|++||+++++.+..+..+   .....++++|
T Consensus       536 s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~sp  612 (694)
T 3dm0_A          536 SASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN---SVIHALCFSP  612 (694)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS---SCEEEEEECS
T ss_pred             EEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC---CcEEEEEEcC
Confidence            999999999999988765433  45678999999999999999999999999999999988776554   2356678999


Q ss_pred             CCceEEeecCCCeEEEEECcCccceeeeccC
Q 023772          239 SDAHVTGGSEDGYIYFWDLVDASVVAKFKAH  269 (277)
Q Consensus       239 ~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h  269 (277)
                      ++.++++++ |+.|++||+.+++++..++.|
T Consensus       613 ~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~  642 (694)
T 3dm0_A          613 NRYWLCAAT-EHGIKIWDLESKSIVEDLKVD  642 (694)
T ss_dssp             SSSEEEEEE-TTEEEEEETTTTEEEEEECCC
T ss_pred             CCcEEEEEc-CCCEEEEECCCCCChhhhccc
Confidence            988887765 567999999999998887654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-39  Score=263.23  Aligned_cols=257  Identities=19%  Similarity=0.294  Sum_probs=221.2

Q ss_pred             cccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023772            9 TEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWD   88 (277)
Q Consensus         9 ~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd   88 (277)
                      +....+.+|.++|.+++| +++++|++++.||.|++||+.+++....+..|...|.+++|+|++++|++++.|+.+++|+
T Consensus         9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~   87 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVP   87 (313)
T ss_dssp             EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEE
Confidence            445678999999999999 9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCC---ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEe---cCCeEEEe
Q 023772           89 VSTG---RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCL---TKTEIIGG  162 (277)
Q Consensus        89 ~~~~---~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g  162 (277)
                      +...   +.+..+..|..+|.++.+  +++++++++.|+.|++||.    ......+..+...+..+.+   ++..++++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  161 (313)
T 3odt_A           88 LFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE----GSLVYNLQAHNASVWDAKVVSFSENKFLTA  161 (313)
T ss_dssp             TTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET----TEEEEEEECCSSCEEEEEEEETTTTEEEEE
T ss_pred             eeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC----CcEEEecccCCCceeEEEEccCCCCEEEEE
Confidence            8654   567788899999999999  4679999999999999992    2344555667777776665   46779999


Q ss_pred             ecCCcEEEEEccCCcccccC-CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCc
Q 023772          163 SVDGTVRTFDIRVGRELSDD-LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDA  241 (277)
Q Consensus       163 ~~d~~i~i~d~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (277)
                      +.|+.|++||.......... +...+.+++|+|++. +++++.|+.|++||+++++++..+.+|..  ....++++|++ 
T Consensus       162 ~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~-  237 (313)
T 3odt_A          162 SADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHES--FVYCIKLLPNG-  237 (313)
T ss_dssp             ETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECTTS-
T ss_pred             ECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCc--eEEEEEEecCC-
Confidence            99999999996544333333 677899999999998 99999999999999999999999988854  34567789988 


Q ss_pred             eEEeecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772          242 HVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL  276 (277)
Q Consensus       242 ~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  276 (277)
                      .+++|+.||.|++||+.+++++..+..|...|..+
T Consensus       238 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~  272 (313)
T 3odt_A          238 DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSV  272 (313)
T ss_dssp             CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEE
T ss_pred             CEEEEecCCEEEEEECCCCceeEEEeccCceEEEE
Confidence            68899999999999999999999999998777654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.8e-39  Score=263.78  Aligned_cols=245  Identities=23%  Similarity=0.389  Sum_probs=207.8

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~   90 (277)
                      ...+.+|..+|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.++.|+|++++|++++.|++|++||++
T Consensus        58 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~  137 (312)
T 4ery_A           58 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK  137 (312)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred             chhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEeecCCcE
Q 023772           91 TGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTV  168 (277)
Q Consensus        91 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~d~~i  168 (277)
                      +++++..+..|..+|.++.|+|+++++++++.|+.|++||++..... ......+...+..+.+++  ..+++++.|+.|
T Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i  216 (312)
T 4ery_A          138 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL-KTLIDDDNPPVSFVKFSPNGKYILAATLDNTL  216 (312)
T ss_dssp             TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE-EEECCSSCCCEEEEEECTTSSEEEEEETTTEE
T ss_pred             CCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee-eEEeccCCCceEEEEECCCCCEEEEEcCCCeE
Confidence            99999999999999999999999999999999999999999765321 112233445566666654  569999999999


Q ss_pred             EEEEccCCcccccC--CCC---CeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceE
Q 023772          169 RTFDIRVGRELSDD--LGQ---PVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHV  243 (277)
Q Consensus       169 ~i~d~~~~~~~~~~--~~~---~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  243 (277)
                      ++||+++++.+...  +..   .+......+++.+|++|+.|+.|++||+++++++..+.+|...  ...++++|++.++
T Consensus       217 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~--v~~~~~~p~~~~l  294 (312)
T 4ery_A          217 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV--VISTACHPTENII  294 (312)
T ss_dssp             EEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSC--EEEEEECSSSSEE
T ss_pred             EEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCc--EEEEeecCcCCce
Confidence            99999987654332  222   2233333467889999999999999999999999999988643  4566789999999


Q ss_pred             Eeec--CCCeEEEEECc
Q 023772          244 TGGS--EDGYIYFWDLV  258 (277)
Q Consensus       244 ~sgs--~d~~i~iwd~~  258 (277)
                      ++++  .|++|++|+.+
T Consensus       295 ~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          295 ASAALENDKTIKLWKSD  311 (312)
T ss_dssp             EEEECTTTCCEEEEECC
T ss_pred             EEEEccCCccEEEecCC
Confidence            9886  69999999975

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.6e-39  Score=267.48  Aligned_cols=255  Identities=14%  Similarity=0.224  Sum_probs=210.8

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC----eeEEEEeccCccEEEEEEcC--CCCEEEEEeCCCcE
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG----IHIKTYKSHGREVRDVHVTA--DNSKLISCGGDRQI   84 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~----~~~~~~~~h~~~v~~~~~~~--~~~~l~t~s~d~~v   84 (277)
                      ...+.+|.++|++++|+|++++|++|+.||.|++||+.++    +....+.+|..+|.+++|+|  ++++|++++.|+.|
T Consensus         4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v   83 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV   83 (351)
T ss_dssp             CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence            4567899999999999999999999999999999998876    46778889999999999999  58999999999999


Q ss_pred             EEEECCCC---------ceeEEeecccCceeEEEEecC--CCEEEEEeCCCcEEEEeCccCCCcceEee-----------
Q 023772           85 FYWDVSTG---------RVIRKFRGHESEVNAVKFNEY--SSVVVSAGYDQSLRAWDCRSHSTEPIQII-----------  142 (277)
Q Consensus        85 ~~wd~~~~---------~~~~~~~~h~~~v~~i~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----------  142 (277)
                      ++||++++         +++..+..|..+|.+++|+|+  ++++++++.||.|++||++..........           
T Consensus        84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  163 (351)
T 3f3f_A           84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP  163 (351)
T ss_dssp             EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred             EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence            99999887         567788899999999999999  99999999999999999876543221111           


Q ss_pred             ccccCcEEEEEec-----CCeEEEeecCCcEEEEEccCCcc--cc--cCCCCCeeEEEEeCCC----CEEEEEecCCeEE
Q 023772          143 DSFQDSVMSVCLT-----KTEIIGGSVDGTVRTFDIRVGRE--LS--DDLGQPVNCISMSNDG----NCILASCLDSTLR  209 (277)
Q Consensus       143 ~~~~~~~~~~~~~-----~~~~~~g~~d~~i~i~d~~~~~~--~~--~~~~~~v~~~~~s~~~----~~l~~~~~d~~i~  209 (277)
                      ..+...+..+.+.     +..+++++.|+.+.+|+...++.  +.  ..+...|++++|+|++    ++|++++.|+.|+
T Consensus       164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~  243 (351)
T 3f3f_A          164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR  243 (351)
T ss_dssp             SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred             CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence            1334455666664     45699999999998888766543  21  2356789999999998    8999999999999


Q ss_pred             EEECCCC----------------------------------------------ceEEEEeccccceeeeeeEecCCCceE
Q 023772          210 LLDRSTG----------------------------------------------ELLQEYKGHICKSFKTDCCLTNSDAHV  243 (277)
Q Consensus       210 ~wd~~~~----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l  243 (277)
                      +||++.+                                              +++..+.+|..  .+..++++|++.+|
T Consensus       244 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~s~~~~~l  321 (351)
T 3f3f_A          244 IFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNG--EVWSVSWNLTGTIL  321 (351)
T ss_dssp             EEEEEECC---------------------------------------CCSEEEEEEEEECTTSS--CEEEEEECSSSCCE
T ss_pred             EEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccc--cEEEEEEcCCCCEE
Confidence            9999764                                              55666777754  35667889999999


Q ss_pred             EeecCCCeEEEEECcCccceeeec
Q 023772          244 TGGSEDGYIYFWDLVDASVVAKFK  267 (277)
Q Consensus       244 ~sgs~d~~i~iwd~~~~~~~~~~~  267 (277)
                      ++|+.||.|++||+.+++....+.
T Consensus       322 ~s~~~dg~v~iw~~~~~~~~~~~~  345 (351)
T 3f3f_A          322 SSAGDDGKVRLWKATYSNEFKCMS  345 (351)
T ss_dssp             EEEETTSCEEEEEECTTSCEEEEE
T ss_pred             EEecCCCcEEEEecCcCcchhhee
Confidence            999999999999999886655443

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=7.9e-40  Score=275.16  Aligned_cols=254  Identities=15%  Similarity=0.253  Sum_probs=217.4

Q ss_pred             ccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCe------eEEEEeccCccEEEEEEcCC----C---CEEE
Q 023772           10 EANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI------HIKTYKSHGREVRDVHVTAD----N---SKLI   76 (277)
Q Consensus        10 ~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~------~~~~~~~h~~~v~~~~~~~~----~---~~l~   76 (277)
                      ....+.+|.++|++++|+|  ++|++|+.|++|++||+.+++      ....+..|..+|.+++|+|+    +   ++|+
T Consensus         8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~   85 (397)
T 1sq9_A            8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   85 (397)
T ss_dssp             EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence            3566789999999999998  799999999999999998887      78889999999999999999    8   9999


Q ss_pred             EEeCCCcEEEEECCCCce-----eEEeecc-----cCceeEEEEe----cCCCE-EEEEeCCCcEEEEeCcc------CC
Q 023772           77 SCGGDRQIFYWDVSTGRV-----IRKFRGH-----ESEVNAVKFN----EYSSV-VVSAGYDQSLRAWDCRS------HS  135 (277)
Q Consensus        77 t~s~d~~v~~wd~~~~~~-----~~~~~~h-----~~~v~~i~~~----~~~~~-l~s~~~d~~i~iwd~~~------~~  135 (277)
                      +++.|+.|++||+++++.     +..+..|     ...|.+++|+    |+++. +++++.||.|++||++.      ..
T Consensus        86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  165 (397)
T 1sq9_A           86 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL  165 (397)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred             EEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc
Confidence            999999999999998887     8888888     5999999999    99999 99999999999999986      33


Q ss_pred             Ccc---eEee-------ccccCcEEEEEecCC-eEEEeecCCcEEEEEccCCccccc--C---C---CCCeeEEEEeCCC
Q 023772          136 TEP---IQII-------DSFQDSVMSVCLTKT-EIIGGSVDGTVRTFDIRVGRELSD--D---L---GQPVNCISMSNDG  196 (277)
Q Consensus       136 ~~~---~~~~-------~~~~~~~~~~~~~~~-~~~~g~~d~~i~i~d~~~~~~~~~--~---~---~~~v~~~~~s~~~  196 (277)
                      ...   ...+       ..+...+..+.++++ .+++++.|+.|++||+++++.+..  .   +   ..++.+++|+|++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~  245 (397)
T 1sq9_A          166 TLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG  245 (397)
T ss_dssp             TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSST
T ss_pred             eeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCC
Confidence            222   0022       335666777777654 788999999999999998765433  2   4   6789999999999


Q ss_pred             CEEEEEecC---CeEEEEECCCCceEEEEec-------------cccceeeeeeEecCCCceEEeecCCCeEEEEECcCc
Q 023772          197 NCILASCLD---STLRLLDRSTGELLQEYKG-------------HICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDA  260 (277)
Q Consensus       197 ~~l~~~~~d---~~i~~wd~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~  260 (277)
                      ++|++++.|   +.|++||+++++.+..+.+             |..  ....++++|++.+|++|+.||.|++||+.++
T Consensus       246 ~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  323 (397)
T 1sq9_A          246 SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS--WVMSLSFNDSGETLCSAGWDGKLRFWDVKTK  323 (397)
T ss_dssp             TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS--CEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred             CEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCC--cEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            999999999   9999999999999999887             643  4566788999999999999999999999999


Q ss_pred             cceeeec
Q 023772          261 SVVAKFK  267 (277)
Q Consensus       261 ~~~~~~~  267 (277)
                      +++..++
T Consensus       324 ~~~~~~~  330 (397)
T 1sq9_A          324 ERITTLN  330 (397)
T ss_dssp             EEEEEEE
T ss_pred             ceeEEEe
Confidence            9999999

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=5.7e-41  Score=281.40  Aligned_cols=249  Identities=23%  Similarity=0.359  Sum_probs=210.6

Q ss_pred             ccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCe-------eEEEEeccCccEEEEEEcCCC-CEEEEEeCC
Q 023772           10 EANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI-------HIKTYKSHGREVRDVHVTADN-SKLISCGGD   81 (277)
Q Consensus        10 ~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~-------~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~d   81 (277)
                      ....+.+|...|.+++|+|+|++|++|+.|+.+++||+.+..       ....+.+|.+.|.++.|.|++ .+|++|+.|
T Consensus       100 ~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D  179 (380)
T 3iz6_a          100 KTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGD  179 (380)
T ss_dssp             EEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTT
T ss_pred             cceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCC
Confidence            345678999999999999999999999999999999986432       345678999999999999974 579999999


Q ss_pred             CcEEEEECCCCceeEEe-----ecccCceeEEEEec-CCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec
Q 023772           82 RQIFYWDVSTGRVIRKF-----RGHESEVNAVKFNE-YSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT  155 (277)
Q Consensus        82 ~~v~~wd~~~~~~~~~~-----~~h~~~v~~i~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  155 (277)
                      ++|++||+++++.+..+     .+|...|.++.+++ +++++++|+.|++|++||++... .....+..|...+.++.++
T Consensus       180 ~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~-~~~~~~~~h~~~v~~v~~~  258 (380)
T 3iz6_a          180 QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS-RAVRTYHGHEGDINSVKFF  258 (380)
T ss_dssp             SCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC-CCCEEECCCSSCCCEEEEC
T ss_pred             CcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC-cceEEECCcCCCeEEEEEe
Confidence            99999999999988777     67999999999987 78999999999999999997432 3455667788888888876


Q ss_pred             C--CeEEEeecCCcEEEEEccCCcccccC---------CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEE--
Q 023772          156 K--TEIIGGSVDGTVRTFDIRVGRELSDD---------LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEY--  222 (277)
Q Consensus       156 ~--~~~~~g~~d~~i~i~d~~~~~~~~~~---------~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~--  222 (277)
                      +  ..+++|+.|++|++||+++++.+...         ....+.+++|+|+|++|++|+.||.|++||..+++.+..+  
T Consensus       259 p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~  338 (380)
T 3iz6_a          259 PDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGT  338 (380)
T ss_dssp             TTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECC
T ss_pred             cCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEec
Confidence            5  46999999999999999987654321         1124899999999999999999999999999998888776  


Q ss_pred             --eccccceeeeeeEecCCCceEEeecCCCeEEEEECcCcc
Q 023772          223 --KGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDAS  261 (277)
Q Consensus       223 --~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~  261 (277)
                        .+|..  .+..++++|++.+|++|+.|+.|++|++...+
T Consensus       339 ~~~~h~~--~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          339 LQNSHEG--RISCLGLSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             SCSSCCC--CCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             ccCCCCC--ceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence              45543  35667899999999999999999999987653

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=4e-39  Score=283.49  Aligned_cols=258  Identities=25%  Similarity=0.461  Sum_probs=224.4

Q ss_pred             cccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023772            9 TEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWD   88 (277)
Q Consensus         9 ~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd   88 (277)
                      +....+.+|.++|.+++|+|+++++++++.|+++++||... ..+..+.+|..++.+++|+|++++|++++.|+.+++||
T Consensus       294 ~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~  372 (577)
T 2ymu_A          294 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN  372 (577)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEc
Confidence            34456789999999999999999999999999999999764 55678889999999999999999999999999999999


Q ss_pred             CCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEeecCC
Q 023772           89 VSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDG  166 (277)
Q Consensus        89 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~d~  166 (277)
                      . +++++..+.+|..+|.+++|+|++++|++++.|+.|++||...   .....+..+...+..+.+++  ..+++++.|+
T Consensus       373 ~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~---~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~  448 (577)
T 2ymu_A          373 R-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG---QLLQTLTGHSSSVWGVAFSPDDQTIASASDDK  448 (577)
T ss_dssp             T-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC---CEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             C-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC---CEEEEecCCCCCeEEEEECCCCCEEEEEcCCC
Confidence            5 5778889999999999999999999999999999999999642   34555667888888888775  4599999999


Q ss_pred             cEEEEEccCCcccc--cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEE
Q 023772          167 TVRTFDIRVGRELS--DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVT  244 (277)
Q Consensus       167 ~i~i~d~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  244 (277)
                      +|++||... +.+.  ..+..+|++++|+|++++|++++.|+.|++||. ++++++.+.+|...  +..++++|++++|+
T Consensus       449 ~v~~w~~~~-~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~--v~~l~~s~dg~~l~  524 (577)
T 2ymu_A          449 TVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSS--VRGVAFSPDGQTIA  524 (577)
T ss_dssp             EEEEEETTS-CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSC--EEEEEECTTSSCEE
T ss_pred             EEEEEECCC-CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCC--EEEEEEcCCCCEEE
Confidence            999999753 3222  245678999999999999999999999999995 67888999998644  45678999999999


Q ss_pred             eecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772          245 GGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL  276 (277)
Q Consensus       245 sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  276 (277)
                      +|+.||.|++||. +++++..+.+|+..|..+
T Consensus       525 s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~  555 (577)
T 2ymu_A          525 SASDDKTVKLWNR-NGQLLQTLTGHSSSVWGV  555 (577)
T ss_dssp             EEETTSEEEEECT-TSCEEEEEECCSSCEEEE
T ss_pred             EEECcCEEEEEeC-CCCEEEEEcCCCCCEEEE
Confidence            9999999999995 688999999999988754

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2.8e-39  Score=271.01  Aligned_cols=259  Identities=14%  Similarity=0.101  Sum_probs=215.4

Q ss_pred             cceeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEcCCCCeeEEEEe--ccCccEEEEEEcC-CCCEEEEEeCCCcEEE
Q 023772           11 ANVLKGHEGAVLAARFNGDG-NYCLSCGKDRTIRLWNPHRGIHIKTYK--SHGREVRDVHVTA-DNSKLISCGGDRQIFY   86 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~--~h~~~v~~~~~~~-~~~~l~t~s~d~~v~~   86 (277)
                      ...+.+|.++|.+++|+|++ ++|++|+.|+.|++||+.+++....+.  +|...|.+++|+| ++++|++++.|+.|++
T Consensus        66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i  145 (383)
T 3ei3_B           66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTL  145 (383)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred             EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEE
Confidence            44678999999999999999 999999999999999999887777765  6999999999999 6789999999999999


Q ss_pred             EECCCCceeEEeecc---cCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC---eEE
Q 023772           87 WDVSTGRVIRKFRGH---ESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT---EII  160 (277)
Q Consensus        87 wd~~~~~~~~~~~~h---~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  160 (277)
                      ||+++ ..+..+..|   ...|.+++|+|+++++++++.|+.|++||++   ......+..+...+.++.+++.   .++
T Consensus       146 wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~---~~~~~~~~~h~~~v~~~~~~~~~~~~l~  221 (383)
T 3ei3_B          146 RDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD---GHEIFKEKLHKAKVTHAEFNPRCDWLMA  221 (383)
T ss_dssp             EETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT---SCEEEEEECSSSCEEEEEECSSCTTEEE
T ss_pred             EECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC---CCEEEEeccCCCcEEEEEECCCCCCEEE
Confidence            99986 445555444   4889999999999999999999999999984   2355666778888999988765   689


Q ss_pred             EeecCCcEEEEEccCC----cccc-cCCCCCeeEEEEeC-CCCEEEEEecCCeEEEEECCCCceEEEEeccccc------
Q 023772          161 GGSVDGTVRTFDIRVG----RELS-DDLGQPVNCISMSN-DGNCILASCLDSTLRLLDRSTGELLQEYKGHICK------  228 (277)
Q Consensus       161 ~g~~d~~i~i~d~~~~----~~~~-~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~------  228 (277)
                      +++.|+.|++||++..    ..+. ..+...+.+++|+| ++++|++++.|+.|++||+++++....+.+|...      
T Consensus       222 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  301 (383)
T 3ei3_B          222 TSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLT  301 (383)
T ss_dssp             EEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSC
T ss_pred             EEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccccccc
Confidence            9999999999999873    2222 23567899999999 9999999999999999999998887777755321      


Q ss_pred             ---------eeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeecc--CcceeEe
Q 023772          229 ---------SFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKA--HSLVVKL  275 (277)
Q Consensus       229 ---------~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~--h~~~v~~  275 (277)
                               .....++++|++++  +|+.|+.|++||+.+++++.++++  |...+.+
T Consensus       302 ~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~  357 (383)
T 3ei3_B          302 PIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISL  357 (383)
T ss_dssp             CCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCE
T ss_pred             ceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEE
Confidence                     11122456777777  888999999999999999999987  4455543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=6.4e-39  Score=292.75  Aligned_cols=263  Identities=16%  Similarity=0.273  Sum_probs=234.3

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~   90 (277)
                      ...+.+|.+.|.+++|+|++++|++++.||.|++||..+++.+..+..|..+|++++|+|++++|++++.|+.|++||+.
T Consensus         6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~   85 (814)
T 3mkq_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN   85 (814)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred             ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC---CeEEEeecCCc
Q 023772           91 TGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK---TEIIGGSVDGT  167 (277)
Q Consensus        91 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~d~~  167 (277)
                      +++.+..+.+|...|.+++|+|+++.+++++.||+|++||+.... .....+..+...+..+.+++   ..+++++.||.
T Consensus        86 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~  164 (814)
T 3mkq_A           86 TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT  164 (814)
T ss_dssp             TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS-EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE
T ss_pred             CCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc-eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCe
Confidence            999999999999999999999999999999999999999997642 33455667788888888876   35899999999


Q ss_pred             EEEEEccCCccccc---CCCCCeeEEEEeC--CCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCce
Q 023772          168 VRTFDIRVGRELSD---DLGQPVNCISMSN--DGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAH  242 (277)
Q Consensus       168 i~i~d~~~~~~~~~---~~~~~v~~~~~s~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (277)
                      |++||++.+.....   .....+.+++|+|  ++.+|++++.|+.|++||+.+++.+..+.+|...  ...++++|++.+
T Consensus       165 v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~--v~~~~~~~~~~~  242 (814)
T 3mkq_A          165 VKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSN--VSFAVFHPTLPI  242 (814)
T ss_dssp             EEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSC--EEEEEECSSSSE
T ss_pred             EEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCC--EEEEEEcCCCCE
Confidence            99999987654322   3346899999999  9999999999999999999999999999888543  455678999999


Q ss_pred             EEeecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772          243 VTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL  276 (277)
Q Consensus       243 l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  276 (277)
                      +++|+.||.|++||+.+++.+..+..|...|..+
T Consensus       243 l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~  276 (814)
T 3mkq_A          243 IISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCI  276 (814)
T ss_dssp             EEEEETTSCEEEEETTTCSEEEEECCSSSSEEEE
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEE
Confidence            9999999999999999999999999887666543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.4e-38  Score=273.16  Aligned_cols=250  Identities=23%  Similarity=0.391  Sum_probs=216.2

Q ss_pred             cceeeccCCcE-EEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 023772           11 ANVLKGHEGAV-LAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDV   89 (277)
Q Consensus        11 ~~~l~~H~~~V-~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~   89 (277)
                      ...+.+|.++| .++.|  ++++|++|+.||+|++||+.+++.+..+.+|.++|.+++|++++ ++++|+.|++|++||+
T Consensus       114 ~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~  190 (464)
T 3v7d_B          114 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDI  190 (464)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEET
T ss_pred             eEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEEC
Confidence            45788999885 55555  56799999999999999999999999999999999999999887 9999999999999999


Q ss_pred             CCCceeEEeecccCceeEEEEe--cCCCEEEEEeCCCcEEEEeCccCCCcc---------------------eEeecccc
Q 023772           90 STGRVIRKFRGHESEVNAVKFN--EYSSVVVSAGYDQSLRAWDCRSHSTEP---------------------IQIIDSFQ  146 (277)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~i~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~---------------------~~~~~~~~  146 (277)
                      ++++++..+.+|..+|.++++.  +++.++++++.|++|++||++......                     ......+.
T Consensus       191 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (464)
T 3v7d_B          191 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM  270 (464)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCS
T ss_pred             CCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCcc
Confidence            9999999999999999999998  467899999999999999997643221                     33456677


Q ss_pred             CcEEEEEecCCeEEEeecCCcEEEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEec
Q 023772          147 DSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKG  224 (277)
Q Consensus       147 ~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~  224 (277)
                      ..+..+..++..+++|+.|+.|++||+++++.+..  .+...+.+++|+|+++++++|+.|+.|++||+++++++..+.+
T Consensus       271 ~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~  350 (464)
T 3v7d_B          271 ASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG  350 (464)
T ss_dssp             SCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             ceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC
Confidence            78888888899999999999999999998776543  3567899999999999999999999999999999999999998


Q ss_pred             cccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeec
Q 023772          225 HICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFK  267 (277)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~  267 (277)
                      |....  ....++  +.++++|+.||.|++||+.+++....+.
T Consensus       351 h~~~v--~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~  389 (464)
T 3v7d_B          351 HTALV--GLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH  389 (464)
T ss_dssp             CSSCE--EEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CCCcE--EEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec
Confidence            86543  333443  6899999999999999999987665553

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.7e-39  Score=269.06  Aligned_cols=273  Identities=15%  Similarity=0.241  Sum_probs=217.3

Q ss_pred             CCcCCccccccceeeccCCcEEEEEEeCCCCEEE-EEeC---CCcEEEEcCCCCeeEEEE-eccCccEEEEEEcCC---C
Q 023772            1 MSVSDLPRTEANVLKGHEGAVLAARFNGDGNYCL-SCGK---DRTIRLWNPHRGIHIKTY-KSHGREVRDVHVTAD---N   72 (277)
Q Consensus         1 ~~~~~~~~~~~~~l~~H~~~V~~~~~~~~~~~l~-s~s~---d~~v~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~---~   72 (277)
                      |+-.+-|......+.+|.++|.+++|+|++..++ +++.   |+.|++||+.+++..... .+|..+|.+++|+|+   +
T Consensus         1 m~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   80 (357)
T 3i2n_A            1 MSAFEKPQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQ   80 (357)
T ss_dssp             ----CCCCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTT
T ss_pred             CCccChhHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCC
Confidence            3444556666677889999999999999996555 5665   999999999988765443 378999999999998   6


Q ss_pred             CEEEEEeCCCcEEEEECCCCc-eeEEeecccCceeEEEE------ecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccc
Q 023772           73 SKLISCGGDRQIFYWDVSTGR-VIRKFRGHESEVNAVKF------NEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSF  145 (277)
Q Consensus        73 ~~l~t~s~d~~v~~wd~~~~~-~~~~~~~h~~~v~~i~~------~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  145 (277)
                      ++|++++.|+.|++||+++++ ++..+.+|...|.++.+      +++++++++++.|+.|++||++.... ....+..+
T Consensus        81 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~  159 (357)
T 3i2n_A           81 RYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD-PVANMEPV  159 (357)
T ss_dssp             CCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS-CSEEECCC
T ss_pred             ceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC-cceecccc
Confidence            999999999999999999988 88899999999999965      67899999999999999999986542 23333332


Q ss_pred             c----CcEEEEE------ecCCeEEEeecCCcEEEEEccCCccccc-CCCCCeeEEEEeC---CCCEEEEEecCCeEEEE
Q 023772          146 Q----DSVMSVC------LTKTEIIGGSVDGTVRTFDIRVGRELSD-DLGQPVNCISMSN---DGNCILASCLDSTLRLL  211 (277)
Q Consensus       146 ~----~~~~~~~------~~~~~~~~g~~d~~i~i~d~~~~~~~~~-~~~~~v~~~~~s~---~~~~l~~~~~d~~i~~w  211 (277)
                      .    ..+.++.      .++..+++++.|+.|++||++.++.... .+...+.+++|+|   ++.+|++++.|+.|++|
T Consensus       160 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~  239 (357)
T 3i2n_A          160 QGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVF  239 (357)
T ss_dssp             TTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEE
T ss_pred             CCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEE
Confidence            2    2566666      3456799999999999999998765432 4567899999999   99999999999999999


Q ss_pred             ECCCCceEEEEe-----ccccceeeeeeEecCCCc-eEEeecCCCeEEEEECcCc-------------------cceeee
Q 023772          212 DRSTGELLQEYK-----GHICKSFKTDCCLTNSDA-HVTGGSEDGYIYFWDLVDA-------------------SVVAKF  266 (277)
Q Consensus       212 d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~l~sgs~d~~i~iwd~~~~-------------------~~~~~~  266 (277)
                      |+++++.+..+.     +|..  ....++++|++. ++++|+.||.|++||+.++                   +++..+
T Consensus       240 d~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  317 (357)
T 3i2n_A          240 DMRTQHPTKGFASVSEKAHKS--TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV  317 (357)
T ss_dssp             EEEEEETTTEEEEEEEECCSS--CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEE
T ss_pred             eCcCCCcccceeeeccCCCcC--CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecc
Confidence            998776655444     6643  345677899988 8999999999999999864                   467788


Q ss_pred             ccCcceeEee
Q 023772          267 KAHSLVVKLL  276 (277)
Q Consensus       267 ~~h~~~v~~~  276 (277)
                      .+|...|..+
T Consensus       318 ~~~~~~v~~~  327 (357)
T 3i2n_A          318 TLSTQPISSL  327 (357)
T ss_dssp             ECCSSCEEEE
T ss_pred             ccCCCCeeEE
Confidence            8898877654

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1e-38  Score=265.03  Aligned_cols=266  Identities=16%  Similarity=0.300  Sum_probs=222.8

Q ss_pred             cccccceeeccCCcEEEEEEeCC---CCEEEEEeCCCcEEEEcCCC-CeeE-EEEeccCccEEEEEEcCCCCEEEEEeCC
Q 023772            7 PRTEANVLKGHEGAVLAARFNGD---GNYCLSCGKDRTIRLWNPHR-GIHI-KTYKSHGREVRDVHVTADNSKLISCGGD   81 (277)
Q Consensus         7 ~~~~~~~l~~H~~~V~~~~~~~~---~~~l~s~s~d~~v~iwd~~~-~~~~-~~~~~h~~~v~~~~~~~~~~~l~t~s~d   81 (277)
                      |......+.+|.++|++++|+|+   |++|++|+.|+.|++||+.+ +..+ ..+.+|..+|.+++|+|++++|++++.|
T Consensus        28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d  107 (368)
T 3mmy_A           28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD  107 (368)
T ss_dssp             TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred             CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC
Confidence            44556678899999999999999   69999999999999999987 5544 7888999999999999999999999999


Q ss_pred             CcEEEEECCCCceeEEeecccCceeEEEE--ecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeE
Q 023772           82 RQIFYWDVSTGRVIRKFRGHESEVNAVKF--NEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEI  159 (277)
Q Consensus        82 ~~v~~wd~~~~~~~~~~~~h~~~v~~i~~--~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (277)
                      +.|++||+++++++. +..|..+|.++.|  +++++++++++.||.|++||++....  ...+.. ...+..+.+.+..+
T Consensus       108 g~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~-~~~~~~~~~~~~~~  183 (368)
T 3mmy_A          108 KTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP--MMVLQL-PERCYCADVIYPMA  183 (368)
T ss_dssp             SEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC--SEEEEC-SSCEEEEEEETTEE
T ss_pred             CcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE--EEEEec-CCCceEEEecCCee
Confidence            999999999988776 5669999999999  88999999999999999999987543  333333 34677777888889


Q ss_pred             EEeecCCcEEEEEccCCccc----ccCCCCCeeEEEEeCCCCE----EEEEecCCeEEEEECCCC---ceEEEEeccccc
Q 023772          160 IGGSVDGTVRTFDIRVGREL----SDDLGQPVNCISMSNDGNC----ILASCLDSTLRLLDRSTG---ELLQEYKGHICK  228 (277)
Q Consensus       160 ~~g~~d~~i~i~d~~~~~~~----~~~~~~~v~~~~~s~~~~~----l~~~~~d~~i~~wd~~~~---~~~~~~~~~~~~  228 (277)
                      ++++.++.+++||++.....    .........++.+.++...    +++++.|+.|++||+...   +.+..+.+|...
T Consensus       184 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~  263 (368)
T 3mmy_A          184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN  263 (368)
T ss_dssp             EEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC
T ss_pred             EEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecc
Confidence            99999999999999875432    2233456777777766554    999999999999999877   556777777432


Q ss_pred             e----------eeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772          229 S----------FKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL  276 (277)
Q Consensus       229 ~----------~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  276 (277)
                      .          ....++++|++.+|++|+.||.|++||+.+++++..+++|...|..+
T Consensus       264 ~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  321 (368)
T 3mmy_A          264 GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISAC  321 (368)
T ss_dssp             ----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEE
T ss_pred             cccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEE
Confidence            1          35667899999999999999999999999999999999999888754

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=8.2e-39  Score=266.45  Aligned_cols=244  Identities=14%  Similarity=0.200  Sum_probs=208.8

Q ss_pred             eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCe--eEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772           13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI--HIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        13 ~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~   90 (277)
                      .+..|.++|.+++|+|++++|++++.|+.|++||+.+++  .+..+.+|...|.+++|+|++++|++++.|+.|++||++
T Consensus         3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~   82 (372)
T 1k8k_C            3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK   82 (372)
T ss_dssp             EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred             eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence            456799999999999999999999999999999999887  888999999999999999999999999999999999998


Q ss_pred             CCceeEE--eecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCc--ceEeeccccCcEEEEEecC--CeEEEeec
Q 023772           91 TGRVIRK--FRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTE--PIQIIDSFQDSVMSVCLTK--TEIIGGSV  164 (277)
Q Consensus        91 ~~~~~~~--~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~g~~  164 (277)
                      +++....  +..|...|.+++|+|+++++++++.|+.|++||++.....  .......+...+..+.+.+  ..+++++.
T Consensus        83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  162 (372)
T 1k8k_C           83 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC  162 (372)
T ss_dssp             TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred             CCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence            8875443  4678999999999999999999999999999999865421  1222345677888888865  45999999


Q ss_pred             CCcEEEEEcc------------------CCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEec
Q 023772          165 DGTVRTFDIR------------------VGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKG  224 (277)
Q Consensus       165 d~~i~i~d~~------------------~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~  224 (277)
                      |+.|++||++                  .++.+..  .+...+.+++|+|++++|++++.|+.|++||+++++++..+..
T Consensus       163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  242 (372)
T 1k8k_C          163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS  242 (372)
T ss_dssp             TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC
T ss_pred             CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEcc
Confidence            9999999964                  2332222  3456899999999999999999999999999999999999988


Q ss_pred             cccceeeeeeEecCCCceEEeecCCCeEEEEECcC
Q 023772          225 HICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVD  259 (277)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~  259 (277)
                      |..  ....++++|++.++++| .|+.|++|++.+
T Consensus       243 ~~~--~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          243 ETL--PLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             SSC--CEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             CCC--CeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            753  34556788999999988 899999999988

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2.4e-39  Score=276.24  Aligned_cols=250  Identities=16%  Similarity=0.310  Sum_probs=204.7

Q ss_pred             ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCe-----------eEEEEeccC------------ccEEEEEEcCCC
Q 023772           16 GHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI-----------HIKTYKSHG------------REVRDVHVTADN   72 (277)
Q Consensus        16 ~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~-----------~~~~~~~h~------------~~v~~~~~~~~~   72 (277)
                      .|.++|.+++|+|+|++|++|+.||.|+|||+.++.           ....+.+|.            ..|.+++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            468999999999999999999999999999998776           578899998            889999999998


Q ss_pred             --CEEEEEeCCCcEEEEECCCCcee---------------------------------------EE-eecccCceeEEEE
Q 023772           73 --SKLISCGGDRQIFYWDVSTGRVI---------------------------------------RK-FRGHESEVNAVKF  110 (277)
Q Consensus        73 --~~l~t~s~d~~v~~wd~~~~~~~---------------------------------------~~-~~~h~~~v~~i~~  110 (277)
                        .+|++++.|++|++||+.+++..                                       +. ..+|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              79999999999999999764432                                       12 3579999999999


Q ss_pred             ecCCCEEEEEeCCCcEEEEeCccCCCcceE-------eeccccCcEEEEEecCC---eEEEeecCCcEEEEEccCCcc--
Q 023772          111 NEYSSVVVSAGYDQSLRAWDCRSHSTEPIQ-------IIDSFQDSVMSVCLTKT---EIIGGSVDGTVRTFDIRVGRE--  178 (277)
Q Consensus       111 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-------~~~~~~~~~~~~~~~~~---~~~~g~~d~~i~i~d~~~~~~--  178 (277)
                      +|++++|++| .|+.|++||++.... ...       .+..+...+.++.+++.   .+++|+.|+.|++||+++++.  
T Consensus       186 ~~~~~~l~s~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~  263 (447)
T 3dw8_B          186 NSDYETYLSA-DDLRINLWHLEITDR-SFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD  263 (447)
T ss_dssp             CTTSSEEEEE-CSSEEEEEETTEEEE-EEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred             cCCCCEEEEe-CCCeEEEEECCCCCc-eeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence            9999999998 899999999974221 121       24467778888888764   599999999999999988764  


Q ss_pred             --ccc--CCCC------------CeeEEEEeCCCCEEEEEecCCeEEEEECCC-CceEEEEecccccee-----------
Q 023772          179 --LSD--DLGQ------------PVNCISMSNDGNCILASCLDSTLRLLDRST-GELLQEYKGHICKSF-----------  230 (277)
Q Consensus       179 --~~~--~~~~------------~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~-----------  230 (277)
                        ...  .+..            .|.+++|+|+|++|++++. +.|++||+++ ++++..+.+|.....           
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i  342 (447)
T 3dw8_B          264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI  342 (447)
T ss_dssp             TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGG
T ss_pred             ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccccc
Confidence              221  2222            8999999999999999998 9999999987 888888888743111           


Q ss_pred             --eeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccC
Q 023772          231 --KTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAH  269 (277)
Q Consensus       231 --~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h  269 (277)
                        ...++++|++.+|++|+.||.|++||+.+++.+ .+.+|
T Consensus       343 ~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~  382 (447)
T 3dw8_B          343 FDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI-TLEAS  382 (447)
T ss_dssp             GCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE-EEECC
T ss_pred             ccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce-eeeec
Confidence              123689999999999999999999999998775 44444

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.1e-39  Score=270.89  Aligned_cols=243  Identities=19%  Similarity=0.291  Sum_probs=207.0

Q ss_pred             cCCcEEEEEEeCC----CCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcC-CCCEEEEEeCCCcEEEEECCC
Q 023772           17 HEGAVLAARFNGD----GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTA-DNSKLISCGGDRQIFYWDVST   91 (277)
Q Consensus        17 H~~~V~~~~~~~~----~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~d~~v~~wd~~~   91 (277)
                      |.+.|.+++|+|+    +.+|++|+.|+.|++||+.+++.+..+.+|..+|.+++|+| ++.+|++++.|+.|++||+.+
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  147 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT  147 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence            6688999999999    67999999999999999999999999999999999999999 899999999999999999999


Q ss_pred             CceeEEe---ecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCc--------------------------ceEee
Q 023772           92 GRVIRKF---RGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTE--------------------------PIQII  142 (277)
Q Consensus        92 ~~~~~~~---~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--------------------------~~~~~  142 (277)
                      ++.+..+   ..|...|.+++|+|+++++++++.||.|++||++.....                          .....
T Consensus       148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (366)
T 3k26_A          148 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR  227 (366)
T ss_dssp             TEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEEC
T ss_pred             CeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccc
Confidence            9998888   689999999999999999999999999999998753211                          01112


Q ss_pred             ccccCcEEEEEecCCeEEEeecCCcEEEEEccCCccc--------------c--cCCCCCeeEEEEeCC--CCEEEEEec
Q 023772          143 DSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGREL--------------S--DDLGQPVNCISMSND--GNCILASCL  204 (277)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~--------------~--~~~~~~v~~~~~s~~--~~~l~~~~~  204 (277)
                      ..+...+.++.++++.+++++.|+.|++||++.....              .  ..+...+++++|+|+  +++|++++.
T Consensus       228 ~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~  307 (366)
T 3k26_A          228 DIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQ  307 (366)
T ss_dssp             SSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECT
T ss_pred             cCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEec
Confidence            2366778888888889999999999999999876431              1  123457888999999  999999999


Q ss_pred             CCeEEEEECCCCc----eEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcC
Q 023772          205 DSTLRLLDRSTGE----LLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVD  259 (277)
Q Consensus       205 d~~i~~wd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~  259 (277)
                      ||.|++||+.+++    ....+.+|........++++|++.+|++|+.||.|++||+.+
T Consensus       308 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          308 VGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             TSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             CCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence            9999999998875    344677774345567788999999999999999999999853

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-39  Score=275.03  Aligned_cols=254  Identities=15%  Similarity=0.255  Sum_probs=204.4

Q ss_pred             cee-eccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEcCCC---Ce---eEEEEeccCccEEEEEEcCCCCEEEEEeCCCc
Q 023772           12 NVL-KGHEGAVLAARFNG-DGNYCLSCGKDRTIRLWNPHR---GI---HIKTYKSHGREVRDVHVTADNSKLISCGGDRQ   83 (277)
Q Consensus        12 ~~l-~~H~~~V~~~~~~~-~~~~l~s~s~d~~v~iwd~~~---~~---~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~   83 (277)
                      ..+ .+|.++|++++|+| ++++|+||+.|++|++||+.+   +.   ....+ .|..+|.+++|+|++++|++++.|++
T Consensus        56 ~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~  134 (437)
T 3gre_A           56 ATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQ  134 (437)
T ss_dssp             EEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             eeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCE
Confidence            345 78999999999999 999999999999999999765   32   23344 48999999999999999999999999


Q ss_pred             EEEEECC---CCceeEEeec------------ccCceeEEE--EecCCCEEEEEeCCCcEEEEeCccCCCcceEeecc--
Q 023772           84 IFYWDVS---TGRVIRKFRG------------HESEVNAVK--FNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDS--  144 (277)
Q Consensus        84 v~~wd~~---~~~~~~~~~~------------h~~~v~~i~--~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--  144 (277)
                      |++||++   +++.+..+..            +...+.++.  +++++.++++++.|+.|++||++...  ....+..  
T Consensus       135 i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~  212 (437)
T 3gre_A          135 IIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE--RLQIIENSP  212 (437)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC--EEEEEECCG
T ss_pred             EEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe--eeEEEccCC
Confidence            9999995   5555544433            344555555  44778999999999999999998654  3444444  


Q ss_pred             ccCcEEEEEecC--CeEEEeecCCcEEEEEccCCccccc---CCCCCeeEEEEe----CCCCEEEEEecCCeEEEEECCC
Q 023772          145 FQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVGRELSD---DLGQPVNCISMS----NDGNCILASCLDSTLRLLDRST  215 (277)
Q Consensus       145 ~~~~~~~~~~~~--~~~~~g~~d~~i~i~d~~~~~~~~~---~~~~~v~~~~~s----~~~~~l~~~~~d~~i~~wd~~~  215 (277)
                      +...+.++.+++  ..+++|+.||.|++||++.++.+..   .+..+|.+++|+    |++.+|++++.|+.|++||+++
T Consensus       213 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~  292 (437)
T 3gre_A          213 RHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK  292 (437)
T ss_dssp             GGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTT
T ss_pred             CCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCC
Confidence            677888888865  4599999999999999998776543   334579999555    5678999999999999999999


Q ss_pred             CceEEEEeccccc------------------------eeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccC
Q 023772          216 GELLQEYKGHICK------------------------SFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAH  269 (277)
Q Consensus       216 ~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h  269 (277)
                      ++++..+.+|...                        .....++++ ++.+|++|+.|+.|++||+.+++....+.+|
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~  369 (437)
T 3gre_A          293 GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISP  369 (437)
T ss_dssp             TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC
T ss_pred             CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecc
Confidence            9999888866311                        113345666 6789999999999999999999999999875

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=7.1e-38  Score=265.88  Aligned_cols=253  Identities=18%  Similarity=0.289  Sum_probs=212.3

Q ss_pred             eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-
Q 023772           14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTG-   92 (277)
Q Consensus        14 l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~-   92 (277)
                      +.+|.+.|++++|+|+|++|++|+.|++|++||+.+++.+..+.+|...+.++.++  +..|++|+.|+.+++||.... 
T Consensus       143 ~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~  220 (420)
T 4gga_A          143 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAE  220 (420)
T ss_dssp             CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSS
T ss_pred             ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccc
Confidence            35788899999999999999999999999999999999999999999999988875  678999999999999998864 


Q ss_pred             ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCc--ceEeeccccCcEEEEEecCC---eEEE--eecC
Q 023772           93 RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTE--PIQIIDSFQDSVMSVCLTKT---EIIG--GSVD  165 (277)
Q Consensus        93 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~--g~~d  165 (277)
                      ..+.++.+|...+..+.+.++++++++++.|+.+++|+.......  .......+...+..+.+.+.   .+++  |+.|
T Consensus       221 ~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D  300 (420)
T 4gga_A          221 HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD  300 (420)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTT
T ss_pred             eeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCC
Confidence            556788999999999999999999999999999999998765432  33445667778888887653   3443  5689


Q ss_pred             CcEEEEEccCCccccc-CCCCCeeEEEEeCCCCEEEEEe--cCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCce
Q 023772          166 GTVRTFDIRVGRELSD-DLGQPVNCISMSNDGNCILASC--LDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAH  242 (277)
Q Consensus       166 ~~i~i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (277)
                      ++|++||+++++.... .....+.++.|+|+++.+++++  .|+.|++||+.+++++..+.+|...  +..++++|++.+
T Consensus       301 ~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~--V~~l~~spdg~~  378 (420)
T 4gga_A          301 RHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSR--VLSLTMSPDGAT  378 (420)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSC--EEEEEECTTSSC
T ss_pred             CEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCC--EEEEEEcCCCCE
Confidence            9999999998876544 3446789999999999998875  7999999999999999999999654  566789999999


Q ss_pred             EEeecCCCeEEEEECcCccceeeeccCc
Q 023772          243 VTGGSEDGYIYFWDLVDASVVAKFKAHS  270 (277)
Q Consensus       243 l~sgs~d~~i~iwd~~~~~~~~~~~~h~  270 (277)
                      |++|+.|++|+|||+.+.....+.+.|.
T Consensus       379 l~S~s~D~tvriWdv~~~~~~~~~~~~~  406 (420)
T 4gga_A          379 VASAAADETLRLWRCFELDPARRREREK  406 (420)
T ss_dssp             EEEEETTTEEEEECCSCSSCC-------
T ss_pred             EEEEecCCeEEEEECCCCCccchhhhcc
Confidence            9999999999999999877776666554

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.1e-38  Score=271.96  Aligned_cols=260  Identities=14%  Similarity=0.100  Sum_probs=205.4

Q ss_pred             ceeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEcCCCCee--EEEEeccCccEEEEEEcC-CCCEEEEEeCCCcEEEE
Q 023772           12 NVLKGHEGAVLAARFNG-DGNYCLSCGKDRTIRLWNPHRGIH--IKTYKSHGREVRDVHVTA-DNSKLISCGGDRQIFYW   87 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~-~~~~l~s~s~d~~v~iwd~~~~~~--~~~~~~h~~~v~~~~~~~-~~~~l~t~s~d~~v~~w   87 (277)
                      ....+|...|++++|+| ++++||+|+.||+|+|||+.++..  ...+.+|.++|++++|+| ++++|+|||.|++|++|
T Consensus       113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw  192 (435)
T 4e54_B          113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ  192 (435)
T ss_dssp             CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred             ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence            34568999999999999 567999999999999999887654  445668999999999998 67899999999999999


Q ss_pred             ECCCCceeEEeec--ccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC---eEEEe
Q 023772           88 DVSTGRVIRKFRG--HESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT---EIIGG  162 (277)
Q Consensus        88 d~~~~~~~~~~~~--h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g  162 (277)
                      |++++........  +...+.+++|++++++|++|+.||.|++||++..   .+..+..|...+.++.+++.   .+++|
T Consensus       193 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~---~~~~~~~h~~~v~~v~~~p~~~~~~~s~  269 (435)
T 4e54_B          193 DFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK---ELWNLRMHKKKVTHVALNPCCDWFLATA  269 (435)
T ss_dssp             ETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC---BCCCSBCCSSCEEEEEECTTCSSEEEEE
T ss_pred             eccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc---eeEEEecccceEEeeeecCCCceEEEEe
Confidence            9987654433333  3456789999999999999999999999998643   33445678888999998754   47899


Q ss_pred             ecCCcEEEEEccCCcccc-----cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccc----eeeee
Q 023772          163 SVDGTVRTFDIRVGRELS-----DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICK----SFKTD  233 (277)
Q Consensus       163 ~~d~~i~i~d~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~----~~~~~  233 (277)
                      +.|++|++||++..+...     ..+..+|++++|+|+|++|++++.|+.|++||+.+++....+..|...    .....
T Consensus       270 s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  349 (435)
T 4e54_B          270 SVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIK  349 (435)
T ss_dssp             ETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCB
T ss_pred             cCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEE
Confidence            999999999998765332     235568999999999999999999999999999998887777665321    11223


Q ss_pred             eEecCCCceEEee------------cCCCeEEEEECcCccceeeec-cCcceeE
Q 023772          234 CCLTNSDAHVTGG------------SEDGYIYFWDLVDASVVAKFK-AHSLVVK  274 (277)
Q Consensus       234 ~~~~~~~~~l~sg------------s~d~~i~iwd~~~~~~~~~~~-~h~~~v~  274 (277)
                      +.+++++.+++++            ..++.|++||..+++++.++. +|...|.
T Consensus       350 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~  403 (435)
T 4e54_B          350 AAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGIS  403 (435)
T ss_dssp             CEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCC
T ss_pred             EEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEE
Confidence            3455555555444            345689999999999998876 5766554

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=3.9e-38  Score=283.35  Aligned_cols=246  Identities=21%  Similarity=0.404  Sum_probs=206.5

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~   90 (277)
                      ...+.+|.+.|.+++|+|++++|+||+.|++|++||+.++.....+.+|...|.+++|+|++++|++++.|++|++||+.
T Consensus       423 ~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~  502 (694)
T 3dm0_A          423 QRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL  502 (694)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred             cceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECC
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             CCceeEE---eecccCceeEEEEecCC--CEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEee
Q 023772           91 TGRVIRK---FRGHESEVNAVKFNEYS--SVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGS  163 (277)
Q Consensus        91 ~~~~~~~---~~~h~~~v~~i~~~~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~  163 (277)
                      .......   ..+|...|.++.|+|++  ..+++++.|++|++||++...  ....+..|...+.++.+++  ..+++|+
T Consensus       503 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~--~~~~~~~h~~~v~~v~~spdg~~l~sg~  580 (694)
T 3dm0_A          503 GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK--LRSTLAGHTGYVSTVAVSPDGSLCASGG  580 (694)
T ss_dssp             SCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc--EEEEEcCCCCCEEEEEEeCCCCEEEEEe
Confidence            5543322   24688999999999986  589999999999999997643  3455677888898888875  4599999


Q ss_pred             cCCcEEEEEccCCccccc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccc--------------
Q 023772          164 VDGTVRTFDIRVGRELSD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICK--------------  228 (277)
Q Consensus       164 ~d~~i~i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~--------------  228 (277)
                      .|++|++||+++++.+.. .....+.+++|+|++.+++++ .|+.|++||+++++.+..+..+...              
T Consensus       581 ~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  659 (694)
T 3dm0_A          581 KDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAA-TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATK  659 (694)
T ss_dssp             TTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEE-ETTEEEEEETTTTEEEEEECCCCC---------------
T ss_pred             CCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEE-cCCCEEEEECCCCCChhhhccccccccccccccccccCC
Confidence            999999999998876544 334679999999999876665 5667999999999888877543210              


Q ss_pred             ---eeeeeeEecCCCceEEeecCCCeEEEEECcC
Q 023772          229 ---SFKTDCCLTNSDAHVTGGSEDGYIYFWDLVD  259 (277)
Q Consensus       229 ---~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~  259 (277)
                         .....++++|++.+|++|+.||.|++||+..
T Consensus       660 ~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~  693 (694)
T 3dm0_A          660 RKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR  693 (694)
T ss_dssp             -CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             ceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence               1234567899999999999999999999863

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=6.3e-38  Score=265.54  Aligned_cols=242  Identities=19%  Similarity=0.260  Sum_probs=200.3

Q ss_pred             eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 023772           14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGR   93 (277)
Q Consensus        14 l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~   93 (277)
                      +.+| ..+....|++++++|++|+.|+.|++||+.+++....+.+|...|++++|+|++++|++++.|++|++||+++++
T Consensus        94 ~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~  172 (420)
T 3vl1_A           94 LKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS  172 (420)
T ss_dssp             SCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             EecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc
Confidence            3445 445556789999999999999999999999999888888999999999999999999999999999999999999


Q ss_pred             eeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeec---cccCcEEEEEe----------------
Q 023772           94 VIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIID---SFQDSVMSVCL----------------  154 (277)
Q Consensus        94 ~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~----------------  154 (277)
                      .+..+.+|..+|.+++|+|++++|++++.|++|++||+++...  ...+.   .+...+..+.+                
T Consensus       173 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v  250 (420)
T 3vl1_A          173 NPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTT--IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKK  250 (420)
T ss_dssp             CCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE--EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCC
T ss_pred             CceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCce--eEEeecCCCCCCCccEEEEecCCcceeeecccCcc
Confidence            9999999999999999999999999999999999999976532  22332   23333444433                


Q ss_pred             -------cCCeEEEeecCCcEEEEEccCCccccc---CCCCCeeEEEEeCCCC-EEEEEecCCeEEEEECCCCce-EEEE
Q 023772          155 -------TKTEIIGGSVDGTVRTFDIRVGRELSD---DLGQPVNCISMSNDGN-CILASCLDSTLRLLDRSTGEL-LQEY  222 (277)
Q Consensus       155 -------~~~~~~~g~~d~~i~i~d~~~~~~~~~---~~~~~v~~~~~s~~~~-~l~~~~~d~~i~~wd~~~~~~-~~~~  222 (277)
                             ++..+++|+.||.|++||+++++....   .+...+.+++|+|++. +|++|+.||.|++||+++++. +..+
T Consensus       251 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~  330 (420)
T 3vl1_A          251 NNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEF  330 (420)
T ss_dssp             CTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE
T ss_pred             cceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhh
Confidence                   334689999999999999998765432   3456899999999998 999999999999999998744 6777


Q ss_pred             eccccceeeeeeEecCCCceEEeecCCCeEEEEECcCc
Q 023772          223 KGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDA  260 (277)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~  260 (277)
                      .+|....  ..+.+.+++.++++|+.|+.|++||+.+.
T Consensus       331 ~~~~~~~--v~~~~~~~~~~l~s~~~d~~v~iw~~~~~  366 (420)
T 3vl1_A          331 LINEGTP--INNVYFAAGALFVSSGFDTSIKLDIISDP  366 (420)
T ss_dssp             EESTTSC--EEEEEEETTEEEEEETTTEEEEEEEECCT
T ss_pred             hccCCCC--ceEEEeCCCCEEEEecCCccEEEEeccCC
Confidence            7643322  22334567889999999999999998874

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.4e-37  Score=253.94  Aligned_cols=255  Identities=16%  Similarity=0.280  Sum_probs=214.6

Q ss_pred             eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCe---eEEEEe--ccCccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 023772           13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI---HIKTYK--SHGREVRDVHVTADNSKLISCGGDRQIFYW   87 (277)
Q Consensus        13 ~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~---~~~~~~--~h~~~v~~~~~~~~~~~l~t~s~d~~v~~w   87 (277)
                      ...+|.++|.+++|+|+++++++++ |+.|++||+.++.   ....+.  .|...|.+++|+|++++|++++.|+.|++|
T Consensus        46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~  124 (337)
T 1gxr_A           46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW  124 (337)
T ss_dssp             EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred             eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence            3458999999999999999999999 9999999988754   233444  789999999999999999999999999999


Q ss_pred             ECCCCc--eeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEee
Q 023772           88 DVSTGR--VIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGS  163 (277)
Q Consensus        88 d~~~~~--~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~  163 (277)
                      |+++++  ....+..|...|.+++|+|+++++++++.|+.|++||++..  .....+..+...+..+.+++  ..+++++
T Consensus       125 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  202 (337)
T 1gxr_A          125 DLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ--TLVRQFQGHTDGASCIDISNDGTKLWTGG  202 (337)
T ss_dssp             ECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             ECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC--ceeeeeecccCceEEEEECCCCCEEEEEe
Confidence            999877  66778889999999999999999999999999999999764  34455666778888888865  4699999


Q ss_pred             cCCcEEEEEccCCccccc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCce
Q 023772          164 VDGTVRTFDIRVGRELSD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAH  242 (277)
Q Consensus       164 ~d~~i~i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (277)
                      .|+.|++||++.++.... ....++.+++|+|+++++++++.|+.|++||+.+++.. .+..|..  ....++++|++++
T Consensus       203 ~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~--~v~~~~~~~~~~~  279 (337)
T 1gxr_A          203 LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHES--CVLSLKFAYCGKW  279 (337)
T ss_dssp             TTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSS--CEEEEEECTTSSE
T ss_pred             cCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCcc--ceeEEEECCCCCE
Confidence            999999999998765433 35678999999999999999999999999999987754 4555543  3566788999999


Q ss_pred             EEeecCCCeEEEEECcCccceeeeccCcceeE
Q 023772          243 VTGGSEDGYIYFWDLVDASVVAKFKAHSLVVK  274 (277)
Q Consensus       243 l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~  274 (277)
                      +++++.||.|++||+.+++.+.... |...|.
T Consensus       280 l~~~~~dg~i~~~~~~~~~~~~~~~-~~~~v~  310 (337)
T 1gxr_A          280 FVSTGKDNLLNAWRTPYGASIFQSK-ESSSVL  310 (337)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEE-CSSCEE
T ss_pred             EEEecCCCcEEEEECCCCeEEEEec-CCCcEE
Confidence            9999999999999999998875543 444443

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-37  Score=262.02  Aligned_cols=258  Identities=15%  Similarity=0.198  Sum_probs=214.1

Q ss_pred             eccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEcC----CCCe------eEEEEec----------cCccEEEEEEcCCCC
Q 023772           15 KGHEGAVLAARFNGDGN-YCLSCGKDRTIRLWNP----HRGI------HIKTYKS----------HGREVRDVHVTADNS   73 (277)
Q Consensus        15 ~~H~~~V~~~~~~~~~~-~l~s~s~d~~v~iwd~----~~~~------~~~~~~~----------h~~~v~~~~~~~~~~   73 (277)
                      ..|.++|.+++|+|+++ +|++|+.|+.|++||+    .+++      ....+..          |...|++++|+|+++
T Consensus        42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  121 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN  121 (425)
T ss_dssp             EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred             eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence            34669999999999999 9999999999999999    8877      4555554          678999999999999


Q ss_pred             EEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCc----------------
Q 023772           74 KLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTE----------------  137 (277)
Q Consensus        74 ~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~----------------  137 (277)
                      +|++++.|+.|++|| .+++.+..+..|..+|.+++|+|+++++++++.|+.|++||+......                
T Consensus       122 ~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  200 (425)
T 1r5m_A          122 SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAE  200 (425)
T ss_dssp             EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC----------
T ss_pred             EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeec
Confidence            999999999999999 677888899999999999999999999999999999999998643210                


Q ss_pred             --------------------------------------ceEeeccccCcEEEEEecC--CeEEEeecCCcEEEEEccCCc
Q 023772          138 --------------------------------------PIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVGR  177 (277)
Q Consensus       138 --------------------------------------~~~~~~~~~~~~~~~~~~~--~~~~~g~~d~~i~i~d~~~~~  177 (277)
                                                            ....+..+...+..+.+++  ..+++++.|+.|++||++.++
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  280 (425)
T 1r5m_A          201 NHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGN  280 (425)
T ss_dssp             -----CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBS
T ss_pred             cccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc
Confidence                                                  1112223455667776654  459999999999999998876


Q ss_pred             cccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEE
Q 023772          178 ELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFW  255 (277)
Q Consensus       178 ~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iw  255 (277)
                      ....  .+...+.+++|+|++ ++++++.|+.|++||+++++++..+..|..  ....++++|++.++++|+.||.|++|
T Consensus       281 ~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~dg~i~i~  357 (425)
T 1r5m_A          281 SQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV--PIFAGRISQDGQKYAVAFMDGQVNVY  357 (425)
T ss_dssp             CSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTC--CEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             cceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCc--cEEEEEEcCCCCEEEEEECCCeEEEE
Confidence            5433  356789999999999 999999999999999999999998887754  34567789999999999999999999


Q ss_pred             ECcCcc--------------------ceeeeccCcc--eeEee
Q 023772          256 DLVDAS--------------------VVAKFKAHSL--VVKLL  276 (277)
Q Consensus       256 d~~~~~--------------------~~~~~~~h~~--~v~~~  276 (277)
                      |+.+++                    ++..+.+|..  .|..+
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  400 (425)
T 1r5m_A          358 DLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDL  400 (425)
T ss_dssp             ECHHHHC--------------CEECCEEEEECCTTCCCCEEEE
T ss_pred             ECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEE
Confidence            999998                    8999999965  66543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.3e-37  Score=262.64  Aligned_cols=246  Identities=19%  Similarity=0.278  Sum_probs=205.6

Q ss_pred             ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCce
Q 023772           16 GHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS-TGRV   94 (277)
Q Consensus        16 ~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~-~~~~   94 (277)
                      .|.++|.+++|+|++++|++|+.||.|++||+.+++.+..+..|...|.++.|+  +..|++++.|+.|++||+. .+..
T Consensus       132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~  209 (401)
T 4aez_A          132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQ  209 (401)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCE
T ss_pred             CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcce
Confidence            389999999999999999999999999999999999999999999999999994  5799999999999999998 5677


Q ss_pred             eEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC---eEEEee--cCCcEE
Q 023772           95 IRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT---EIIGGS--VDGTVR  169 (277)
Q Consensus        95 ~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~--~d~~i~  169 (277)
                      +..+.+|...|.+++|+|+++++++++.|+.|++||++..  .....+..+...+.++.+.+.   .+++|+  .|+.|+
T Consensus       210 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~--~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~  287 (401)
T 4aez_A          210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS--IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIH  287 (401)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCS--SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEE
T ss_pred             eeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCC--CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEE
Confidence            8889999999999999999999999999999999999864  344556667778888888763   356654  799999


Q ss_pred             EEEccCCccccc-CCCCCeeEEEEeCCCCEEEEEe--cCCeEEEEECCCCceEEE--EeccccceeeeeeEecCCCceEE
Q 023772          170 TFDIRVGRELSD-DLGQPVNCISMSNDGNCILASC--LDSTLRLLDRSTGELLQE--YKGHICKSFKTDCCLTNSDAHVT  244 (277)
Q Consensus       170 i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~--~d~~i~~wd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~  244 (277)
                      +||+++++.+.. .....+.+++|+|+++++++++  .|+.|++||+.+++....  +.+|..  ....++++|++.+|+
T Consensus       288 i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~--~v~~~~~s~dg~~l~  365 (401)
T 4aez_A          288 FWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDT--RVLYSALSPDGRILS  365 (401)
T ss_dssp             EEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSS--CCCEEEECTTSSEEE
T ss_pred             EEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCC--CEEEEEECCCCCEEE
Confidence            999998765543 3456899999999999999954  899999999988765554  556643  456678899999999


Q ss_pred             eecCCCeEEEEECcCccceeeec
Q 023772          245 GGSEDGYIYFWDLVDASVVAKFK  267 (277)
Q Consensus       245 sgs~d~~i~iwd~~~~~~~~~~~  267 (277)
                      +|+.||.|++||+.+++.+.+..
T Consensus       366 s~~~dg~i~iw~~~~~~~~~~~~  388 (401)
T 4aez_A          366 TAASDENLKFWRVYDGDHVKRPI  388 (401)
T ss_dssp             EECTTSEEEEEECCC--------
T ss_pred             EEeCCCcEEEEECCCCccccccc
Confidence            99999999999999998876654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.6e-39  Score=271.75  Aligned_cols=243  Identities=14%  Similarity=0.168  Sum_probs=197.5

Q ss_pred             eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC--eeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772           13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG--IHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        13 ~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~   90 (277)
                      ..+.|.++|++++|+|++++|++|+.|+.|++||+.++  +....+.+|...|.+++|+|++++|++++.|++|++||++
T Consensus         6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~   85 (377)
T 3dwl_C            6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR   85 (377)
T ss_dssp             EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred             eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence            45668899999999999999999999999999999988  7788899999999999999999999999999999999999


Q ss_pred             CCc---eeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCC-cceEeecc-ccCcEEEEEecCC--eEEEee
Q 023772           91 TGR---VIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHST-EPIQIIDS-FQDSVMSVCLTKT--EIIGGS  163 (277)
Q Consensus        91 ~~~---~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~-~~~~~~~~~~~~~--~~~~g~  163 (277)
                      +++   ....+..|...|.+++|+|++++|++++.|+.|++||++.... .....+.. +...+..+.++++  .+++++
T Consensus        86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~  165 (377)
T 3dwl_C           86 PDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGC  165 (377)
T ss_dssp             ---CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEE
T ss_pred             CCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEe
Confidence            877   6777888999999999999999999999999999999986542 12334444 7888988888764  599999


Q ss_pred             cCCcEEEEEccCC------------------ccccc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCce----EE
Q 023772          164 VDGTVRTFDIRVG------------------RELSD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGEL----LQ  220 (277)
Q Consensus       164 ~d~~i~i~d~~~~------------------~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~----~~  220 (277)
                      .|++|++||++..                  +.+.. .+...|.+++|+|++++|++++.|+.|++||+.+++.    +.
T Consensus       166 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  245 (377)
T 3dwl_C          166 ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALI  245 (377)
T ss_dssp             SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECC
T ss_pred             CCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeE
Confidence            9999999998532                  11111 4456799999999999999999999999999999887    77


Q ss_pred             EEeccccceeeeeeEecCCCceEEeecCCCeEEEEECc
Q 023772          221 EYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLV  258 (277)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~  258 (277)
                      .+.+|...  ...++++|++.+|++|+.|+.+ +|+..
T Consensus       246 ~~~~~~~~--v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          246 TVKLSQLP--LRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             CEECSSSC--EEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             eecCCCCc--eEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            78877543  4567789999999999887766 66554

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.6e-37  Score=263.53  Aligned_cols=250  Identities=22%  Similarity=0.356  Sum_probs=217.0

Q ss_pred             eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 023772           15 KGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRV   94 (277)
Q Consensus        15 ~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~   94 (277)
                      .+|..+|.++.|  +++++++|+.||+|++||..+++....+.+|...|.+++|  ++++|++|+.||+|++||++++++
T Consensus       130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~  205 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM  205 (435)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE
T ss_pred             cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE
Confidence            457778998876  7899999999999999999999999999999999999999  678999999999999999999999


Q ss_pred             eEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcc-eEeeccccCcEEEEEecCCeEEEeecCCcEEEEEc
Q 023772           95 IRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEP-IQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDI  173 (277)
Q Consensus        95 ~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~  173 (277)
                      +.++.+|...|.++.+++  ..+++|+.||.|++||++...... ......+...+.++.+++..+++|+.|+.|++||+
T Consensus       206 ~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~  283 (435)
T 1p22_A          206 LNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNT  283 (435)
T ss_dssp             EEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEET
T ss_pred             EEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEEC
Confidence            999999999999999974  599999999999999998654332 24566788889999999999999999999999999


Q ss_pred             cCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCe
Q 023772          174 RVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGY  251 (277)
Q Consensus       174 ~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~  251 (277)
                      ++++.+..  .+...+.++.++  ++++++|+.|+.|++||+++++++..+.+|....  ..+.  .++.++++|+.||.
T Consensus       284 ~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v--~~~~--~~~~~l~sg~~dg~  357 (435)
T 1p22_A          284 STCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELV--RCIR--FDNKRIVSGAYDGK  357 (435)
T ss_dssp             TTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCE--EEEE--CCSSEEEEEETTSC
T ss_pred             CcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcE--EEEE--ecCCEEEEEeCCCc
Confidence            98776543  345678888884  6799999999999999999999999999886443  3233  37889999999999


Q ss_pred             EEEEECcCcc---------ceeeeccCcceeEee
Q 023772          252 IYFWDLVDAS---------VVAKFKAHSLVVKLL  276 (277)
Q Consensus       252 i~iwd~~~~~---------~~~~~~~h~~~v~~~  276 (277)
                      |++||+.++.         ++..+.+|...|..+
T Consensus       358 i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l  391 (435)
T 1p22_A          358 IKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL  391 (435)
T ss_dssp             EEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCE
T ss_pred             EEEEECCCCCCccccccchheeeccCCCCCeEEE
Confidence            9999998887         889999998877643

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.2e-37  Score=256.95  Aligned_cols=259  Identities=18%  Similarity=0.309  Sum_probs=212.6

Q ss_pred             ceeeccCCcEEEEEEeCC----CCEEEEEeCCCcEEEEcCCCCeeEEEEec-----cCccEEEEEEcCC----CCEEEEE
Q 023772           12 NVLKGHEGAVLAARFNGD----GNYCLSCGKDRTIRLWNPHRGIHIKTYKS-----HGREVRDVHVTAD----NSKLISC   78 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~~----~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-----h~~~v~~~~~~~~----~~~l~t~   78 (277)
                      ..+.+|.++|.+++|+|+    ...+++++.++.|++||..+++.+..+..     |...|.+++|+|+    +++|++|
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   91 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA   91 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred             EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence            345689999999999984    45666777777999999998877766654     5577999999998    6689999


Q ss_pred             eCCCcEEEEECCCCceeEEeecccCceeEEEEec-CCCEEEEEeCCCcEEEEeCccCCCcceEee---ccccCcEEEEEe
Q 023772           79 GGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNE-YSSVVVSAGYDQSLRAWDCRSHSTEPIQII---DSFQDSVMSVCL  154 (277)
Q Consensus        79 s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~  154 (277)
                      +.|+.|++||+++++.+..+.+|..+|.+++|+| +++++++++.||.|++||++...  ....+   ..+...+..+.+
T Consensus        92 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~  169 (366)
T 3k26_A           92 GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT--LVAIFGGVEGHRDEVLSADY  169 (366)
T ss_dssp             ETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE--EEEEECSTTSCSSCEEEEEE
T ss_pred             cCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe--EEEEecccccccCceeEEEE
Confidence            9999999999999999999999999999999999 89999999999999999997643  33344   567788888888


Q ss_pred             cC--CeEEEeecCCcEEEEEccCCccccc------------------------------CCCCCeeEEEEeCCCCEEEEE
Q 023772          155 TK--TEIIGGSVDGTVRTFDIRVGRELSD------------------------------DLGQPVNCISMSNDGNCILAS  202 (277)
Q Consensus       155 ~~--~~~~~g~~d~~i~i~d~~~~~~~~~------------------------------~~~~~v~~~~~s~~~~~l~~~  202 (277)
                      ++  ..+++++.|+.|++||++.++....                              .+...|.+++|+  +++|+++
T Consensus       170 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~  247 (366)
T 3k26_A          170 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSK  247 (366)
T ss_dssp             CTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEE
T ss_pred             CCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEE
Confidence            75  4699999999999999987643211                              156689999998  6799999


Q ss_pred             ecCCeEEEEECCCCce--------------EEEEeccccceeeeeeEecCC--CceEEeecCCCeEEEEECcCcccee--
Q 023772          203 CLDSTLRLLDRSTGEL--------------LQEYKGHICKSFKTDCCLTNS--DAHVTGGSEDGYIYFWDLVDASVVA--  264 (277)
Q Consensus       203 ~~d~~i~~wd~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~--~~~l~sgs~d~~i~iwd~~~~~~~~--  264 (277)
                      +.|+.|++||+.+++.              +..+.+|...  ...++++|+  +.+|++|+.||.|++||+.+++...  
T Consensus       248 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  325 (366)
T 3k26_A          248 SCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCD--IWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAK  325 (366)
T ss_dssp             CSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCC--SSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCE
T ss_pred             ecCCEEEEEeCCCccccccccccCCcchheeccccccCCc--EEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcccc
Confidence            9999999999987643              6677777543  344566777  9999999999999999999987554  


Q ss_pred             --eeccC--cceeEee
Q 023772          265 --KFKAH--SLVVKLL  276 (277)
Q Consensus       265 --~~~~h--~~~v~~~  276 (277)
                        .+.+|  ...|..+
T Consensus       326 ~~~~~~~~~~~~v~~~  341 (366)
T 3k26_A          326 CTTLTHHKCGAAIRQT  341 (366)
T ss_dssp             EEEECCTTCCSCEEEE
T ss_pred             ceEEcccccCCceEEE
Confidence              78877  5666543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=7.4e-37  Score=261.35  Aligned_cols=253  Identities=25%  Similarity=0.444  Sum_probs=218.4

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~   90 (277)
                      ...+.+|.+.|.. ++.++|++|++|+.||+|++||+.+++.+..+.+|...|.++.|+  ++.+++|+.|++|++||++
T Consensus       111 ~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~  187 (445)
T 2ovr_B          111 PKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAE  187 (445)
T ss_dssp             CEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred             eEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECC
Confidence            4568899997643 345568999999999999999999999999999999999999997  5699999999999999999


Q ss_pred             CCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCCcEEE
Q 023772           91 TGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRT  170 (277)
Q Consensus        91 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i  170 (277)
                      +++++..+.+|...|.++.++  ++.+++|+.||+|++||+++..  ....+..+...+.++.+++..+++|+.|+.|++
T Consensus       188 ~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i  263 (445)
T 2ovr_B          188 TGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQ--CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKV  263 (445)
T ss_dssp             TTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCC--EEEEEECCSSCEEEEEECSSCEEEEETTSCEEE
T ss_pred             cCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCc--EEEEEcCCcccEEEEEECCCEEEEEcCCCEEEE
Confidence            999999999999999999996  5689999999999999997643  455566788889999998889999999999999


Q ss_pred             EEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecC
Q 023772          171 FDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSE  248 (277)
Q Consensus       171 ~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~  248 (277)
                      ||+++++.+..  .+...+.++.|  ++.++++++.|+.|++||+++++++..+.+|....  .  ++.+++.++++|+.
T Consensus       264 wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v--~--~~~~~~~~l~~~~~  337 (445)
T 2ovr_B          264 WDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT--S--GMELKDNILVSGNA  337 (445)
T ss_dssp             EEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCE--E--EEEEETTEEEEEET
T ss_pred             EECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccE--E--EEEEeCCEEEEEeC
Confidence            99998775543  34567888888  78899999999999999999999999998875432  2  23446779999999


Q ss_pred             CCeEEEEECcCccceeeecc---CcceeEee
Q 023772          249 DGYIYFWDLVDASVVAKFKA---HSLVVKLL  276 (277)
Q Consensus       249 d~~i~iwd~~~~~~~~~~~~---h~~~v~~~  276 (277)
                      ||.|++||+.+++.+..+.+   |..+|..+
T Consensus       338 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~  368 (445)
T 2ovr_B          338 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL  368 (445)
T ss_dssp             TSCEEEEETTTCCEEEEECSTTSCSSCEEEE
T ss_pred             CCeEEEEECCCCcEEEEEccCCCCCCCEEEE
Confidence            99999999999999999987   77777653

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3e-36  Score=247.44  Aligned_cols=237  Identities=17%  Similarity=0.311  Sum_probs=205.6

Q ss_pred             ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCe--eEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 023772           16 GHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI--HIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGR   93 (277)
Q Consensus        16 ~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~   93 (277)
                      +|.++|.+++|+|++++|++++.|+.|++||+.+++  ....+..|...|.+++|+|+++++++++.|+.|++||+++++
T Consensus        95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~  174 (337)
T 1gxr_A           95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT  174 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Confidence            799999999999999999999999999999998876  567788899999999999999999999999999999999999


Q ss_pred             eeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEeecCCcEEEE
Q 023772           94 VIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTF  171 (277)
Q Consensus        94 ~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~d~~i~i~  171 (277)
                      .+..+..|...|.+++|+|+++.+++++.|+.|++||++....  .... .+...+..+.+++  ..+++++.|+.|++|
T Consensus       175 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~--~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~  251 (337)
T 1gxr_A          175 LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ--LQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVL  251 (337)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE--EEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             eeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCce--Eeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEE
Confidence            9999999999999999999999999999999999999976532  2222 3456677777765  468999999999999


Q ss_pred             EccCCcccc-cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCC
Q 023772          172 DIRVGRELS-DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDG  250 (277)
Q Consensus       172 d~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~  250 (277)
                      |++.++... ..+..++.+++|+|++++|++++.|+.|++||+.+++.+.... |.  .....++++|++.++++++.||
T Consensus       252 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~-~~--~~v~~~~~s~~~~~l~~~~~dg  328 (337)
T 1gxr_A          252 HVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ES--SSVLSCDISVDDKYIVTGSGDK  328 (337)
T ss_dssp             ETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CS--SCEEEEEECTTSCEEEEEETTS
T ss_pred             ECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEec-CC--CcEEEEEECCCCCEEEEecCCC
Confidence            998776443 2456789999999999999999999999999999988875543 32  3355678899999999999999


Q ss_pred             eEEEEECc
Q 023772          251 YIYFWDLV  258 (277)
Q Consensus       251 ~i~iwd~~  258 (277)
                      .|++||+.
T Consensus       329 ~i~iw~~~  336 (337)
T 1gxr_A          329 KATVYEVI  336 (337)
T ss_dssp             CEEEEEEE
T ss_pred             eEEEEEEe
Confidence            99999973

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.9e-38  Score=285.49  Aligned_cols=248  Identities=17%  Similarity=0.239  Sum_probs=208.9

Q ss_pred             ceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCC--CCeeEEEEeccCccEEEEEEcCC--CCEEEEEeCCCcEEEE
Q 023772           12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPH--RGIHIKTYKSHGREVRDVHVTAD--NSKLISCGGDRQIFYW   87 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~--~~~~~~~~~~h~~~v~~~~~~~~--~~~l~t~s~d~~v~~w   87 (277)
                      .++.+|.++|++++|+|+++++++|+.||+|++||+.  ++.....+.+|.++|++++|+++  +++|++|+.||+|++|
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw   82 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   82 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence            4678999999999999999999999999999999987  55778889999999999999988  8999999999999999


Q ss_pred             ECCCCc--eeEEeecccCceeEEEEecC--CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC-------
Q 023772           88 DVSTGR--VIRKFRGHESEVNAVKFNEY--SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK-------  156 (277)
Q Consensus        88 d~~~~~--~~~~~~~h~~~v~~i~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------  156 (277)
                      |+.+++  .+..+..|..+|.++.|+|+  ++.+++|+.||+|++||++............+...+.++.+.+       
T Consensus        83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~  162 (753)
T 3jro_A           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (753)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred             ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence            999886  67788899999999999999  9999999999999999998765555556677888888888876       


Q ss_pred             --------CeEEEeecCCcEEEEEccCCccc------ccCCCCCeeEEEEeCC---CCEEEEEecCCeEEEEECCCCc--
Q 023772          157 --------TEIIGGSVDGTVRTFDIRVGREL------SDDLGQPVNCISMSND---GNCILASCLDSTLRLLDRSTGE--  217 (277)
Q Consensus       157 --------~~~~~g~~d~~i~i~d~~~~~~~------~~~~~~~v~~~~~s~~---~~~l~~~~~d~~i~~wd~~~~~--  217 (277)
                              ..+++|+.||.|++||++.+...      ...+..+|.+++|+|+   +++|++++.||.|++||+.+++  
T Consensus       163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~  242 (753)
T 3jro_A          163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP  242 (753)
T ss_dssp             ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSC
T ss_pred             ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCc
Confidence                    35999999999999999876421      1245678999999999   8999999999999999998764  


Q ss_pred             ---eEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCcc
Q 023772          218 ---LLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDAS  261 (277)
Q Consensus       218 ---~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~  261 (277)
                         .......|  ......++++|++.++++|+.||.|++||+.++.
T Consensus       243 ~~~~~~~~~~~--~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          243 WKKTLLKEEKF--PDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             CBCCBSSSSCC--SSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred             ceeEEeccCCC--CCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence               22222223  2344567889999999999999999999998643

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.2e-36  Score=256.09  Aligned_cols=255  Identities=22%  Similarity=0.307  Sum_probs=204.5

Q ss_pred             ccceeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEcCCCCeeEEEEe-------------ccCccEEEEEEcC-CCCE
Q 023772           10 EANVLKGHEGAVLAARFNG-DGNYCLSCGKDRTIRLWNPHRGIHIKTYK-------------SHGREVRDVHVTA-DNSK   74 (277)
Q Consensus        10 ~~~~l~~H~~~V~~~~~~~-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-------------~h~~~v~~~~~~~-~~~~   74 (277)
                      ....+.+|.++|++++|+| ++++|++|+.||.|++||+.++.....+.             +|...|.+++|+| ++.+
T Consensus        35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  114 (408)
T 4a11_B           35 DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM  114 (408)
T ss_dssp             TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred             ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence            3456789999999999999 99999999999999999998775544432             5899999999999 7789


Q ss_pred             EEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecC---CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEE
Q 023772           75 LISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEY---SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMS  151 (277)
Q Consensus        75 l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  151 (277)
                      |++++.|+.|++||+.+++.+..+. +...+.++.+.+.   +.++++++.|+.|++||++...  ....+..+...+..
T Consensus       115 l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~--~~~~~~~~~~~v~~  191 (408)
T 4a11_B          115 FTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS--CSHILQGHRQEILA  191 (408)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC--CCEEECCCCSCEEE
T ss_pred             EEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc--eeeeecCCCCcEEE
Confidence            9999999999999999999888776 7888999999885   4499999999999999998653  34556677888888


Q ss_pred             EEecCC---eEEEeecCCcEEEEEccCCcccc------------------cCCCCCeeEEEEeCCCCEEEEEecCCeEEE
Q 023772          152 VCLTKT---EIIGGSVDGTVRTFDIRVGRELS------------------DDLGQPVNCISMSNDGNCILASCLDSTLRL  210 (277)
Q Consensus       152 ~~~~~~---~~~~g~~d~~i~i~d~~~~~~~~------------------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~  210 (277)
                      +.+.+.   .+++|+.||.|++||++......                  ..+...|.+++|+|++++|++++.|+.|++
T Consensus       192 ~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  271 (408)
T 4a11_B          192 VSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRL  271 (408)
T ss_dssp             EEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             EEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEE
Confidence            888765   38899999999999997654110                  234567999999999999999999999999


Q ss_pred             EECCCCc-----------------------------------------------eEEEEeccccceeeeeeEecCCCceE
Q 023772          211 LDRSTGE-----------------------------------------------LLQEYKGHICKSFKTDCCLTNSDAHV  243 (277)
Q Consensus       211 wd~~~~~-----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~l  243 (277)
                      ||+.+++                                               ++..+.+|..  .+..++++|++.+|
T Consensus       272 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l  349 (408)
T 4a11_B          272 WNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYK--TVDCCVFQSNFQEL  349 (408)
T ss_dssp             EETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSS--CEEEEEEETTTTEE
T ss_pred             EECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCC--eEEEEEEcCCCCEE
Confidence            9986543                                               3444555543  34567889999999


Q ss_pred             EeecCCCeEEEEECcCccceeeeccC
Q 023772          244 TGGSEDGYIYFWDLVDASVVAKFKAH  269 (277)
Q Consensus       244 ~sgs~d~~i~iwd~~~~~~~~~~~~h  269 (277)
                      ++|+.||.|++||+.+++.+.....+
T Consensus       350 ~s~~~dg~i~iw~~~~~~~~~~~~~~  375 (408)
T 4a11_B          350 YSGSRDCNILAWVPSLYEPVPDDDET  375 (408)
T ss_dssp             EEEETTSCEEEEEECC----------
T ss_pred             EEECCCCeEEEEeCCCCCccCCCCce
Confidence            99999999999999999887665443

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=5.7e-37  Score=256.97  Aligned_cols=239  Identities=14%  Similarity=0.186  Sum_probs=196.8

Q ss_pred             eccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEcCCCCeeEEEEecc---CccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772           15 KGHEGAVLAARFNG-DGNYCLSCGKDRTIRLWNPHRGIHIKTYKSH---GREVRDVHVTADNSKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        15 ~~H~~~V~~~~~~~-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h---~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~   90 (277)
                      .+|.++|.+++|+| ++++|++++.|+.|++||+.. .....+..|   ...|.+++|+|++++|++++.|+.|++||+ 
T Consensus       115 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-  192 (383)
T 3ei3_B          115 MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-  192 (383)
T ss_dssp             CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-
T ss_pred             CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-
Confidence            47999999999999 789999999999999999986 455566544   378999999999999999999999999999 


Q ss_pred             CCceeEEeecccCceeEEEEecCCC-EEEEEeCCCcEEEEeCccCCC--cceEeeccccCcEEEEEecC---CeEEEeec
Q 023772           91 TGRVIRKFRGHESEVNAVKFNEYSS-VVVSAGYDQSLRAWDCRSHST--EPIQIIDSFQDSVMSVCLTK---TEIIGGSV  164 (277)
Q Consensus        91 ~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~g~~  164 (277)
                      +++.+..+..|...|.+++|+|+++ ++++++.|++|++||++....  ...... .+...+..+.+++   ..+++++.
T Consensus       193 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~  271 (383)
T 3ei3_B          193 DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ  271 (383)
T ss_dssp             TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES
T ss_pred             CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC
Confidence            5778889999999999999999998 999999999999999986432  222223 5778888888876   56999999


Q ss_pred             CCcEEEEEccCCcccccC---------CC----------CCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEecc
Q 023772          165 DGTVRTFDIRVGRELSDD---------LG----------QPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGH  225 (277)
Q Consensus       165 d~~i~i~d~~~~~~~~~~---------~~----------~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~  225 (277)
                      |+.|++||+++++.....         +.          ..+..++|+|++++  +++.|+.|++||+.+++++..+.++
T Consensus       272 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~  349 (383)
T 3ei3_B          272 RNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDP  349 (383)
T ss_dssp             SSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBT
T ss_pred             CCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCC
Confidence            999999999876543211         11          23444667777765  7789999999999999999999876


Q ss_pred             ccceeeeeeEecCCCceEEeecCCCeEEEEECcC
Q 023772          226 ICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVD  259 (277)
Q Consensus       226 ~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~  259 (277)
                      ........++++|++.+|++|+ |+.|++||+++
T Consensus       350 ~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          350 NAAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             TBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             CCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            4344445458999999999997 99999999874

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.8e-37  Score=255.68  Aligned_cols=244  Identities=13%  Similarity=0.167  Sum_probs=203.1

Q ss_pred             eeccCCcEEEEEEeCC---CCEEEEEeCCCcEEEEcCCCCe-eEEEEeccCccEEEEEE------cCCCCEEEEEeCCCc
Q 023772           14 LKGHEGAVLAARFNGD---GNYCLSCGKDRTIRLWNPHRGI-HIKTYKSHGREVRDVHV------TADNSKLISCGGDRQ   83 (277)
Q Consensus        14 l~~H~~~V~~~~~~~~---~~~l~s~s~d~~v~iwd~~~~~-~~~~~~~h~~~v~~~~~------~~~~~~l~t~s~d~~   83 (277)
                      ..+|.++|.+++|+|+   +++|++|+.|+.|++||+.+++ .+..+.+|...|.++.|      +|++++|++++.|+.
T Consensus        61 ~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~  140 (357)
T 3i2n_A           61 EIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGT  140 (357)
T ss_dssp             EEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSC
T ss_pred             eecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCe
Confidence            3479999999999998   7999999999999999999887 88899999999999965      678999999999999


Q ss_pred             EEEEECCCCc-eeEEeecccC----ceeEEE----EecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEe
Q 023772           84 IFYWDVSTGR-VIRKFRGHES----EVNAVK----FNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCL  154 (277)
Q Consensus        84 v~~wd~~~~~-~~~~~~~h~~----~v~~i~----~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  154 (277)
                      |++||+.+++ ++..+..|..    .+.++.    |+++++++++++.|+.|++||++....   .....+...+..+.+
T Consensus       141 i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~v~~~~~  217 (357)
T 3i2n_A          141 VKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL---RWETNIKNGVCSLEF  217 (357)
T ss_dssp             EEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE---EEEEECSSCEEEEEE
T ss_pred             EEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce---eeecCCCCceEEEEc
Confidence            9999999886 6777776654    888888    678999999999999999999986542   233456677888888


Q ss_pred             cC-----CeEEEeecCCcEEEEEccCCccccc-------CCCCCeeEEEEeCCCC-EEEEEecCCeEEEEECCCC-----
Q 023772          155 TK-----TEIIGGSVDGTVRTFDIRVGRELSD-------DLGQPVNCISMSNDGN-CILASCLDSTLRLLDRSTG-----  216 (277)
Q Consensus       155 ~~-----~~~~~g~~d~~i~i~d~~~~~~~~~-------~~~~~v~~~~~s~~~~-~l~~~~~d~~i~~wd~~~~-----  216 (277)
                      ++     ..+++++.|+.|++||++.++....       .+...|.+++|+|++. +|++++.||.|++||++++     
T Consensus       218 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  297 (357)
T 3i2n_A          218 DRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSK  297 (357)
T ss_dssp             SCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--
T ss_pred             CCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccccc
Confidence            75     5699999999999999987654322       4567899999999998 8999999999999998753     


Q ss_pred             --------------ceEEEEeccccceeeeeeEecCCCceEE-eecCCCeEEEEECcCccc
Q 023772          217 --------------ELLQEYKGHICKSFKTDCCLTNSDAHVT-GGSEDGYIYFWDLVDASV  262 (277)
Q Consensus       217 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~-sgs~d~~i~iwd~~~~~~  262 (277)
                                    +++..+.+|..  .+..++++|++.+++ +|+.||.|++||+.+.+.
T Consensus       298 ~~~~g~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          298 KDSEGIEMGVAGSVSLLQNVTLSTQ--PISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             CCTTSCCCCCCCEEEEEEEEECCSS--CEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred             ccCCCCccccccccceeeccccCCC--CeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence                          35667777743  356678899999998 899999999999988764

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.3e-37  Score=260.59  Aligned_cols=247  Identities=15%  Similarity=0.211  Sum_probs=210.3

Q ss_pred             eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCC----CeeEEEEeccCccEEEEEEcCC-CCEEEEEeCCCcEEEEEC
Q 023772           15 KGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHR----GIHIKTYKSHGREVRDVHVTAD-NSKLISCGGDRQIFYWDV   89 (277)
Q Consensus        15 ~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~----~~~~~~~~~h~~~v~~~~~~~~-~~~l~t~s~d~~v~~wd~   89 (277)
                      ..|.++|.+++|+|++++|++++.|+.|++||+.+    .+.+..+.+|...|.+++|+|+ +++|++++.|+.|++||+
T Consensus        64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~  143 (416)
T 2pm9_A           64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM  143 (416)
T ss_dssp             CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred             EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence            46999999999999999999999999999999987    4578889999999999999998 899999999999999999


Q ss_pred             CCCc------eeE---EeecccCceeEEEEecC-CCEEEEEeCCCcEEEEeCccCCCcceEeeccc------cCcEEEEE
Q 023772           90 STGR------VIR---KFRGHESEVNAVKFNEY-SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSF------QDSVMSVC  153 (277)
Q Consensus        90 ~~~~------~~~---~~~~h~~~v~~i~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~  153 (277)
                      .+++      ...   .+..|...|.+++|+|+ +.++++++.|+.|++||++...  ....+..+      ...+..+.
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~v~~~~  221 (416)
T 2pm9_A          144 NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK--EVIHLSYTSPNSGIKQQLSVVE  221 (416)
T ss_dssp             TTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE--EEEEECCCCCSSCCCCCEEEEE
T ss_pred             CCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC--cceEEeccccccccCCceEEEE
Confidence            9876      332   34679999999999999 7899999999999999997643  23333333      56788888


Q ss_pred             ecCC---eEEEeecCC---cEEEEEccCCcc-cc--c-CCCCCeeEEEEeC-CCCEEEEEecCCeEEEEECCCCceEEEE
Q 023772          154 LTKT---EIIGGSVDG---TVRTFDIRVGRE-LS--D-DLGQPVNCISMSN-DGNCILASCLDSTLRLLDRSTGELLQEY  222 (277)
Q Consensus       154 ~~~~---~~~~g~~d~---~i~i~d~~~~~~-~~--~-~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~  222 (277)
                      +++.   .+++++.|+   .|++||++.+.. ..  . .+...+.+++|+| ++.+|++++.|+.|++||+++++++..+
T Consensus       222 ~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~  301 (416)
T 2pm9_A          222 WHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQF  301 (416)
T ss_dssp             ECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEE
T ss_pred             ECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceee
Confidence            8764   588999998   999999998632 22  2 3556899999999 8999999999999999999999999999


Q ss_pred             eccccceeeeeeEecCCC-ceEEeecCCCeEEEEECcCccceee
Q 023772          223 KGHICKSFKTDCCLTNSD-AHVTGGSEDGYIYFWDLVDASVVAK  265 (277)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~-~~l~sgs~d~~i~iwd~~~~~~~~~  265 (277)
                      .+|...  ...++++|++ .++++++.|+.|++||+.++.....
T Consensus       302 ~~~~~~--v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~  343 (416)
T 2pm9_A          302 PARGNW--CFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLD  343 (416)
T ss_dssp             ECSSSC--CCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSC
T ss_pred             cCCCCc--eEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcc
Confidence            888543  4567789998 8999999999999999998775543

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-36  Score=256.04  Aligned_cols=239  Identities=20%  Similarity=0.335  Sum_probs=207.6

Q ss_pred             cCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q 023772           17 HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIR   96 (277)
Q Consensus        17 H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~   96 (277)
                      |.++|.+++|+|++++|++++.|+.|++|| .++..+..+..|..+|.+++|+|++++|++++.|+.|++||+.+++.+.
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  185 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQ  185 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEE
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEE
Confidence            788999999999999999999999999999 6778889999999999999999999999999999999999998765433


Q ss_pred             --------------------------------------------------------EeecccCceeEEEEecCCCEEEEE
Q 023772           97 --------------------------------------------------------KFRGHESEVNAVKFNEYSSVVVSA  120 (277)
Q Consensus        97 --------------------------------------------------------~~~~h~~~v~~i~~~~~~~~l~s~  120 (277)
                                                                              .+..|..+|.+++|+|++++++++
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  265 (425)
T 1r5m_A          186 HFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSA  265 (425)
T ss_dssp             EECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred             EeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEE
Confidence                                                                    344678889999999999999999


Q ss_pred             eCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC-eEEEeecCCcEEEEEccCCccccc--CCCCCeeEEEEeCCCC
Q 023772          121 GYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT-EIIGGSVDGTVRTFDIRVGRELSD--DLGQPVNCISMSNDGN  197 (277)
Q Consensus       121 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~  197 (277)
                      +.|+.|++||++...  ....+..+...+..+.+.+. .+++++.|+.|++||+++++.+..  .+..++.+++|+|+++
T Consensus       266 ~~d~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~  343 (425)
T 1r5m_A          266 SDDGTLRIWHGGNGN--SQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQ  343 (425)
T ss_dssp             ETTSCEEEECSSSBS--CSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSS
T ss_pred             cCCCEEEEEECCCCc--cceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCC
Confidence            999999999987643  34455667778888888765 689999999999999988765543  3467899999999999


Q ss_pred             EEEEEecCCeEEEEECCCCc--------------------eEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEEC
Q 023772          198 CILASCLDSTLRLLDRSTGE--------------------LLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDL  257 (277)
Q Consensus       198 ~l~~~~~d~~i~~wd~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~  257 (277)
                      +|++++.|+.|++||+.+++                    ++..+.+|........++++|++++|++|+.||.|++||+
T Consensus       344 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  423 (425)
T 1r5m_A          344 KYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAI  423 (425)
T ss_dssp             EEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred             EEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEee
Confidence            99999999999999999888                    8888888754214567789999999999999999999998


Q ss_pred             c
Q 023772          258 V  258 (277)
Q Consensus       258 ~  258 (277)
                      +
T Consensus       424 ~  424 (425)
T 1r5m_A          424 P  424 (425)
T ss_dssp             C
T ss_pred             c
Confidence            5

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.4e-37  Score=260.04  Aligned_cols=247  Identities=11%  Similarity=0.126  Sum_probs=209.3

Q ss_pred             ccceeeccCCcEEEEEEeCC----C---CEEEEEeCCCcEEEEcCCCCee-----EEEEecc-----CccEEEEEEc---
Q 023772           10 EANVLKGHEGAVLAARFNGD----G---NYCLSCGKDRTIRLWNPHRGIH-----IKTYKSH-----GREVRDVHVT---   69 (277)
Q Consensus        10 ~~~~l~~H~~~V~~~~~~~~----~---~~l~s~s~d~~v~iwd~~~~~~-----~~~~~~h-----~~~v~~~~~~---   69 (277)
                      ....+.+|..+|.+++|+|+    +   ++|++++.|+.|++||+.+++.     ...+..|     ...|.+++|+   
T Consensus        54 ~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  133 (397)
T 1sq9_A           54 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN  133 (397)
T ss_dssp             GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC
T ss_pred             cceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeecc
Confidence            35667899999999999999    9   9999999999999999988876     8888888     5899999999   


Q ss_pred             -CCCCE-EEEEeCCCcEEEEECCC------CceeE-----Eee-------cccCceeEEEEecCCCEEEEEeCCCcEEEE
Q 023772           70 -ADNSK-LISCGGDRQIFYWDVST------GRVIR-----KFR-------GHESEVNAVKFNEYSSVVVSAGYDQSLRAW  129 (277)
Q Consensus        70 -~~~~~-l~t~s~d~~v~~wd~~~------~~~~~-----~~~-------~h~~~v~~i~~~~~~~~l~s~~~d~~i~iw  129 (277)
                       |++++ |++++.|+.|++||+.+      ++.+.     .+.       .|...|.+++|+|++ ++++++.|+.|++|
T Consensus       134 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~  212 (397)
T 1sq9_A          134 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQIS  212 (397)
T ss_dssp             ----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEE
T ss_pred             CCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEE
Confidence             99999 99999999999999998      76666     774       489999999999999 99999999999999


Q ss_pred             eCccCCCcceEeecc---c---cCcEEEEEecC--CeEEEeecC---CcEEEEEccCCccccc--C-------------C
Q 023772          130 DCRSHSTEPIQIIDS---F---QDSVMSVCLTK--TEIIGGSVD---GTVRTFDIRVGRELSD--D-------------L  183 (277)
Q Consensus       130 d~~~~~~~~~~~~~~---~---~~~~~~~~~~~--~~~~~g~~d---~~i~i~d~~~~~~~~~--~-------------~  183 (277)
                      |++..  .....+..   +   ...+..+.+++  ..+++++.|   +.|++||+++++.+..  .             +
T Consensus       213 d~~~~--~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (397)
T 1sq9_A          213 ELSTL--RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH  290 (397)
T ss_dssp             ETTTT--EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSB
T ss_pred             ECCCC--ceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccccccccccc
Confidence            99864  34444555   6   77788888764  569999999   9999999988765432  2             5


Q ss_pred             CCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEe------cc---------------ccceeeeeeEecCCC--
Q 023772          184 GQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYK------GH---------------ICKSFKTDCCLTNSD--  240 (277)
Q Consensus       184 ~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~------~~---------------~~~~~~~~~~~~~~~--  240 (277)
                      ...|.+++|+|++++|++++.|+.|++||+++++++..+.      +|               .  ..+..++++|++  
T Consensus       291 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~v~~~~~~~~g~~  368 (397)
T 1sq9_A          291 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAE--PGVFDVKFLKKGWR  368 (397)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSS--CCEEEEEEECTTTS
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccC--CceeEEEecccccc
Confidence            6789999999999999999999999999999999999998      55               3  335667789988  


Q ss_pred             --------ceEEeecCCCeEEEEECcCcc
Q 023772          241 --------AHVTGGSEDGYIYFWDLVDAS  261 (277)
Q Consensus       241 --------~~l~sgs~d~~i~iwd~~~~~  261 (277)
                              .++++|+.||.|++||+.+|+
T Consensus       369 ~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          369 SGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             BSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             ccccccccceEEEecCCCcEEEEEcCCCC
Confidence                    799999999999999998874

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=3.5e-36  Score=258.31  Aligned_cols=256  Identities=21%  Similarity=0.378  Sum_probs=215.1

Q ss_pred             ccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEc--CCCCEEEEEeCCCcEEEE
Q 023772           10 EANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVT--ADNSKLISCGGDRQIFYW   87 (277)
Q Consensus        10 ~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~t~s~d~~v~~w   87 (277)
                      ....+.+|.++|.+++|++++ ++++|+.|++|++||+.+++.+..+.+|..+|.+++|.  ++++++++++.|++|++|
T Consensus       154 ~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vw  232 (464)
T 3v7d_B          154 FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW  232 (464)
T ss_dssp             EEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEE
T ss_pred             EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEe
Confidence            345678999999999999988 99999999999999999999999999999999999998  577899999999999999


Q ss_pred             ECCCCce-----------------------eEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeecc
Q 023772           88 DVSTGRV-----------------------IRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDS  144 (277)
Q Consensus        88 d~~~~~~-----------------------~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  144 (277)
                      |+.++..                       +..+.+|...|.++  .++++++++++.|+.|++||+++.  .....+..
T Consensus       233 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~--~~~~~~~~  308 (464)
T 3v7d_B          233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQM--KCLYILSG  308 (464)
T ss_dssp             ECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTT--EEEEEECC
T ss_pred             eCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCC--cEEEEecC
Confidence            9987652                       45677898888876  567889999999999999999764  34556667


Q ss_pred             ccCcEEEEEecC--CeEEEeecCCcEEEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEE
Q 023772          145 FQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQ  220 (277)
Q Consensus       145 ~~~~~~~~~~~~--~~~~~g~~d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~  220 (277)
                      +...+..+.+++  ..+++|+.|+.|++||+++++.+..  .+...|.++.|+  +.+|++++.||.|++||+.+++...
T Consensus       309 ~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~  386 (464)
T 3v7d_B          309 HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF  386 (464)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceee
Confidence            788888888765  4699999999999999998876543  356689999997  5789999999999999999887665


Q ss_pred             EEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceee-eccCcceeEee
Q 023772          221 EYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAK-FKAHSLVVKLL  276 (277)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~-~~~h~~~v~~~  276 (277)
                      .+...   ......++++++.++++|+ ||.|++||+.+++++.+ +..|...|..+
T Consensus       387 ~~~~~---~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v  439 (464)
T 3v7d_B          387 SYHHT---NLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSV  439 (464)
T ss_dssp             EEECT---TCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEE
T ss_pred             eecCC---CCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEE
Confidence            55322   2234456889999999998 99999999999999986 66787777643

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=5.3e-36  Score=256.07  Aligned_cols=254  Identities=26%  Similarity=0.466  Sum_probs=216.6

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~   90 (277)
                      ...+.+|.++|.++.|+  ++++++|+.|++|++||+.+++.+..+.+|...|.++.++  ++.+++|+.|++|++||++
T Consensus       152 ~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~  227 (445)
T 2ovr_B          152 LRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIE  227 (445)
T ss_dssp             EEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESS
T ss_pred             EEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECC
Confidence            45678999999999998  5699999999999999999999999999999999999996  5689999999999999999


Q ss_pred             CCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCCcEEE
Q 023772           91 TGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRT  170 (277)
Q Consensus        91 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i  170 (277)
                      +++++..+.+|..+|.++.+  +++.+++++.||.|++||++..  .....+..+...+.++.+++..+++|+.|+.|++
T Consensus       228 ~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i  303 (445)
T 2ovr_B          228 TGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETE--TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRV  303 (445)
T ss_dssp             SCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGT--EEEEEECCCSSCEEEEEECSSEEEEEETTSCEEE
T ss_pred             CCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCC--cEeEEecCCCCceEEEEECCCEEEEEeCCCeEEE
Confidence            99999999999999999998  6789999999999999998764  3455566788889999998899999999999999


Q ss_pred             EEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccc-cceeeeeeEecCCCceEEeec
Q 023772          171 FDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHI-CKSFKTDCCLTNSDAHVTGGS  247 (277)
Q Consensus       171 ~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~sgs  247 (277)
                      ||+++++.+..  .+...+.++.+  +++++++++.||.|++||+++++.+..+.++. .......+.+  ++.++++|+
T Consensus       304 ~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~  379 (445)
T 2ovr_B          304 WDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSS  379 (445)
T ss_dssp             EETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEE
T ss_pred             EECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEE--CCCEEEEEe
Confidence            99998876544  33456666666  46799999999999999999999999888632 1222333334  578999999


Q ss_pred             CCCeEEEEECcCccceeee-----ccCcceeEee
Q 023772          248 EDGYIYFWDLVDASVVAKF-----KAHSLVVKLL  276 (277)
Q Consensus       248 ~d~~i~iwd~~~~~~~~~~-----~~h~~~v~~~  276 (277)
                      .||.|++||+.+++.+..+     .+|...|..+
T Consensus       380 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  413 (445)
T 2ovr_B          380 DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRI  413 (445)
T ss_dssp             TTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEE
T ss_pred             CCCeEEEEECCCCceeeeeeccccCCCCceEEEE
Confidence            9999999999999999888     4677766543

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=3.4e-38  Score=267.21  Aligned_cols=252  Identities=16%  Similarity=0.207  Sum_probs=209.4

Q ss_pred             cEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEee
Q 023772           20 AVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFR   99 (277)
Q Consensus        20 ~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~   99 (277)
                      .+++++|+|++++|++++.|+.+++||..+++....+..| ..+....+++++++|++++.|+.|++||++++++...+.
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  136 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ  136 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc
Confidence            3457999999999999999999999999887766666665 455566789999999999999999999999999988888


Q ss_pred             cccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEeecCCcEEEEEccCCc
Q 023772          100 GHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVGR  177 (277)
Q Consensus       100 ~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~d~~i~i~d~~~~~  177 (277)
                      +|...|.+++|+|++++|++++.|++|++||++...  ....+..|...+.++.+++  ..+++++.|++|++||+++++
T Consensus       137 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~  214 (420)
T 3vl1_A          137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS--NPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT  214 (420)
T ss_dssp             SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC--CCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred             cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc--CceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc
Confidence            999999999999999999999999999999998654  3455667888888888865  469999999999999998876


Q ss_pred             ccccC-----C---------------------CCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEec-ccccee
Q 023772          178 ELSDD-----L---------------------GQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKG-HICKSF  230 (277)
Q Consensus       178 ~~~~~-----~---------------------~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~  230 (277)
                      .+...     .                     ..++.+++|+|++++|++++.||.|++||+++++.+..+.. |.  ..
T Consensus       215 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~  292 (420)
T 3vl1_A          215 TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFT--CS  292 (420)
T ss_dssp             EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTS--SC
T ss_pred             eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccC--CC
Confidence            54321     1                     23445556689999999999999999999999888777654 43  34


Q ss_pred             eeeeEecCCCc-eEEeecCCCeEEEEECcCccc-eeeecc-CcceeEee
Q 023772          231 KTDCCLTNSDA-HVTGGSEDGYIYFWDLVDASV-VAKFKA-HSLVVKLL  276 (277)
Q Consensus       231 ~~~~~~~~~~~-~l~sgs~d~~i~iwd~~~~~~-~~~~~~-h~~~v~~~  276 (277)
                      ...++++|++. ++++|+.||.|++||+.+++. +..+.+ |..+|..+
T Consensus       293 v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~  341 (420)
T 3vl1_A          293 CNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV  341 (420)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE
T ss_pred             ceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE
Confidence            56677899998 999999999999999999754 788886 56666553

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-36  Score=250.29  Aligned_cols=255  Identities=18%  Similarity=0.298  Sum_probs=220.2

Q ss_pred             ccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCC-----CcE
Q 023772           10 EANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGD-----RQI   84 (277)
Q Consensus        10 ~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d-----~~v   84 (277)
                      ....+.+|.++|.+++|+|++++|++++.|+.|++||+.+++.+..+. |..++.+++|+|+++++++++.+     +.|
T Consensus        66 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i  144 (369)
T 3zwl_B           66 RLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSI  144 (369)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEE
T ss_pred             hhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEE
Confidence            345678999999999999999999999999999999999999988888 88899999999999999999999     999


Q ss_pred             EEEECCCCc-----------eeEEeecccC--ceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEE
Q 023772           85 FYWDVSTGR-----------VIRKFRGHES--EVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMS  151 (277)
Q Consensus        85 ~~wd~~~~~-----------~~~~~~~h~~--~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  151 (277)
                      ++||+..+.           .+..+..|..  .+.+++|+|+++.+++++.||.|++||++.. ......+..+...+..
T Consensus       145 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~  223 (369)
T 3zwl_B          145 NIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNN-YEYVDSIDLHEKSISD  223 (369)
T ss_dssp             EEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTT-TEEEEEEECCSSCEEE
T ss_pred             EEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCC-cEeEEEEecCCCceeE
Confidence            999997653           3445556666  9999999999999999999999999999763 2345556667788888


Q ss_pred             EEecC--CeEEEeecCCcEEEEEccCCccccc-CCCCCeeEEEEeCCCCEEEEEecCC--------------eEEEEECC
Q 023772          152 VCLTK--TEIIGGSVDGTVRTFDIRVGRELSD-DLGQPVNCISMSNDGNCILASCLDS--------------TLRLLDRS  214 (277)
Q Consensus       152 ~~~~~--~~~~~g~~d~~i~i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~--------------~i~~wd~~  214 (277)
                      +.+++  ..+++++.|+.|++||+++++.+.. ....++.+++|+|+++++++++.++              .+++||..
T Consensus       224 ~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~  303 (369)
T 3zwl_B          224 MQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKI  303 (369)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETT
T ss_pred             EEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecC
Confidence            88865  4599999999999999998765443 3567899999999999999999988              89999999


Q ss_pred             CCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeecc
Q 023772          215 TGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKA  268 (277)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~  268 (277)
                      +++.+..+.+|..  ....++++|++.+|++|+.||.|++|+++++....++..
T Consensus       304 ~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~  355 (369)
T 3zwl_B          304 FEEEIGRVQGHFG--PLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFKYDV  355 (369)
T ss_dssp             TCCEEEEEECCSS--CEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTCCCHH
T ss_pred             CCcchhheecccC--cEEEEEECCCCCEEEEEcCCCeEEEEECccccchhHHHH
Confidence            9999999998854  346677899999999999999999999999877666654

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.1e-35  Score=242.33  Aligned_cols=244  Identities=19%  Similarity=0.305  Sum_probs=205.3

Q ss_pred             eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-
Q 023772           14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTG-   92 (277)
Q Consensus        14 l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~-   92 (277)
                      +.+|...|++++|+|++++|++|+.|++|++||+.+++.+..+.+|...+.++.+  ++..+++++.++.+++|+...+ 
T Consensus        63 ~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~  140 (318)
T 4ggc_A           63 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAE  140 (318)
T ss_dssp             CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS
T ss_pred             ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCc
Confidence            3478889999999999999999999999999999999999999999988877665  4678999999999999999875 


Q ss_pred             ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCc--ceEeeccccCcEEEEEecCC---e--EEEeecC
Q 023772           93 RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTE--PIQIIDSFQDSVMSVCLTKT---E--IIGGSVD  165 (277)
Q Consensus        93 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~--~~~g~~d  165 (277)
                      ..+..+.+|...+..+.+.++++++++++.|++|++||++.....  .......+...+..+.+.+.   .  +++++.+
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  220 (318)
T 4ggc_A          141 HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD  220 (318)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTT
T ss_pred             eeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCC
Confidence            456778899999999999999999999999999999999765432  22334445566777666543   2  3467788


Q ss_pred             CcEEEEEccCCccccc-CCCCCeeEEEEeCCCCEEEEEe--cCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCce
Q 023772          166 GTVRTFDIRVGRELSD-DLGQPVNCISMSNDGNCILASC--LDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAH  242 (277)
Q Consensus       166 ~~i~i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (277)
                      ++|++||.+....... .....+..+.|+|++..+++++  .|+.|++||+++++++..+.+|...  +..++++|++.+
T Consensus       221 ~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~--V~~l~~spdg~~  298 (318)
T 4ggc_A          221 RHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSR--VLSLTMSPDGAT  298 (318)
T ss_dssp             CEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSC--EEEEEECTTSSC
T ss_pred             CEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCC--EEEEEEcCCCCE
Confidence            9999999987765433 3456799999999999888765  7999999999999999999999654  566789999999


Q ss_pred             EEeecCCCeEEEEECcCcc
Q 023772          243 VTGGSEDGYIYFWDLVDAS  261 (277)
Q Consensus       243 l~sgs~d~~i~iwd~~~~~  261 (277)
                      |++|+.||+|++||+.+..
T Consensus       299 l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          299 VASAAADETLRLWRCFELD  317 (318)
T ss_dssp             EEEEETTTEEEEECCSCCC
T ss_pred             EEEEecCCeEEEEECCCCC
Confidence            9999999999999997654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=8.5e-36  Score=245.28  Aligned_cols=248  Identities=21%  Similarity=0.372  Sum_probs=208.8

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~   90 (277)
                      ...+++|.++|.+++|+|++++|++++.|+.+++|+............+...+..+.+.+++++|++++.|+.+++||+.
T Consensus        79 ~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~  158 (340)
T 4aow_A           79 QRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL  158 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred             eEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeC
Confidence            45678999999999999999999999999999999999999888888899999999999999999999999999999997


Q ss_pred             CCce-eEEeecccCceeEEEEecCC--CEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEeecC
Q 023772           91 TGRV-IRKFRGHESEVNAVKFNEYS--SVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVD  165 (277)
Q Consensus        91 ~~~~-~~~~~~h~~~v~~i~~~~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~d  165 (277)
                      .... .....+|...+..+.+.+++  .++++++.|+.|++||++...  ....+..+...+.++.+++  ..+++|+.|
T Consensus       159 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~--~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D  236 (340)
T 4aow_A          159 GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK--LKTNHIGHTGYLNTVTVSPDGSLCASGGKD  236 (340)
T ss_dssp             SCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc--eeeEecCCCCcEEEEEECCCCCEEEEEeCC
Confidence            6544 34567899999999998764  578999999999999997643  4455667788888888875  459999999


Q ss_pred             CcEEEEEccCCccccc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccc-------cceeeeeeEec
Q 023772          166 GTVRTFDIRVGRELSD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHI-------CKSFKTDCCLT  237 (277)
Q Consensus       166 ~~i~i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-------~~~~~~~~~~~  237 (277)
                      ++|++||++..+.+.. .....+.++.|+|++. +++++.|+.|++||++++..+..+..+.       ....+..++++
T Consensus       237 g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s  315 (340)
T 4aow_A          237 GQAMLWDLNEGKHLYTLDGGDIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWS  315 (340)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEEC
T ss_pred             CeEEEEEeccCceeeeecCCceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEEC
Confidence            9999999998776543 3446899999999876 5677789999999999888777665321       12345667899


Q ss_pred             CCCceEEeecCCCeEEEEECcCcc
Q 023772          238 NSDAHVTGGSEDGYIYFWDLVDAS  261 (277)
Q Consensus       238 ~~~~~l~sgs~d~~i~iwd~~~~~  261 (277)
                      |++++|++|+.||.|++||+.+|+
T Consensus       316 ~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          316 ADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             TTSSEEEEEETTSCEEEEEEEC--
T ss_pred             CCCCEEEEEeCCCEEEEEeCCCcC
Confidence            999999999999999999999985

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.8e-36  Score=286.69  Aligned_cols=261  Identities=26%  Similarity=0.429  Sum_probs=228.9

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~   90 (277)
                      ...+.+|.+.|++++|+|+|+++++|+.||+|++||..+++.+..+.+|...|.+++|+|++++|++++.|++|++||+.
T Consensus       608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~  687 (1249)
T 3sfz_A          608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA  687 (1249)
T ss_dssp             SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC
Confidence            34567999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeEEeecccCceeEEEEec--CCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEeecCC
Q 023772           91 TGRVIRKFRGHESEVNAVKFNE--YSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDG  166 (277)
Q Consensus        91 ~~~~~~~~~~h~~~v~~i~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~d~  166 (277)
                      +++++.++.+|..+|.++.|++  +..++++++.|+.|++||+++..  ....+..|...+..+.+++  ..+++++.||
T Consensus       688 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~--~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg  765 (1249)
T 3sfz_A          688 TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE--CRNTMFGHTNSVNHCRFSPDDELLASCSADG  765 (1249)
T ss_dssp             TCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS--EEEEECCCSSCEEEEEECSSTTEEEEEESSS
T ss_pred             CCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc--hhheecCCCCCEEEEEEecCCCEEEEEECCC
Confidence            9999999999999999999999  55689999999999999997653  4555667888888888765  4599999999


Q ss_pred             cEEEEEccCCccccc---------------CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEe-cccccee
Q 023772          167 TVRTFDIRVGRELSD---------------DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYK-GHICKSF  230 (277)
Q Consensus       167 ~i~i~d~~~~~~~~~---------------~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~  230 (277)
                      +|++||++.++....               .....+.+++|+|+|+.+++++ ++.+++||..++..+..+. +|.  ..
T Consensus       766 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~--~~  842 (1249)
T 3sfz_A          766 TLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHH--ST  842 (1249)
T ss_dssp             EEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECSSS--SC
T ss_pred             eEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCCCC--Cc
Confidence            999999987653221               1123688999999999988876 7899999999998887765 453  33


Q ss_pred             eeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772          231 KTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL  276 (277)
Q Consensus       231 ~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  276 (277)
                      ...++++|++.++++|+.||.|++||+.++..+..+++|...|..+
T Consensus       843 v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v  888 (1249)
T 3sfz_A          843 IQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGV  888 (1249)
T ss_dssp             CCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEE
Confidence            4567889999999999999999999999999999999999887654

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.4e-38  Score=264.95  Aligned_cols=256  Identities=15%  Similarity=0.214  Sum_probs=214.0

Q ss_pred             cCCcEEEEEEeCCCC-EEEEE----------eCCCcEEEEcCCCCe---eEEEEeccCccEEEEEEcCCCCEEEEEeCCC
Q 023772           17 HEGAVLAARFNGDGN-YCLSC----------GKDRTIRLWNPHRGI---HIKTYKSHGREVRDVHVTADNSKLISCGGDR   82 (277)
Q Consensus        17 H~~~V~~~~~~~~~~-~l~s~----------s~d~~v~iwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~   82 (277)
                      +...|.+++|+|+++ +++++          +.|+.|++||+.++.   .+..+ .|...|.+++|+|++++|++++.|+
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg   89 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNG   89 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSS
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCC
Confidence            456788999999987 99999          899999999998775   33334 5888999999999999999999999


Q ss_pred             cEEEEECCC----CceeEEeecccCceeEEEEecC-CCEEEEEeCCCcEEEEeCccCC------Cc-ceEeeccccCcEE
Q 023772           83 QIFYWDVST----GRVIRKFRGHESEVNAVKFNEY-SSVVVSAGYDQSLRAWDCRSHS------TE-PIQIIDSFQDSVM  150 (277)
Q Consensus        83 ~v~~wd~~~----~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~~~d~~i~iwd~~~~~------~~-~~~~~~~~~~~~~  150 (277)
                      .|++||+.+    .+.+..+.+|..+|.+++|+|+ ++++++++.|+.|++||++...      .. .......+...+.
T Consensus        90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~  169 (416)
T 2pm9_A           90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVI  169 (416)
T ss_dssp             CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCC
T ss_pred             eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCee
Confidence            999999987    4578889999999999999998 8999999999999999998654      11 1112345667777


Q ss_pred             EEEecCC---eEEEeecCCcEEEEEccCCccccc--CC------CCCeeEEEEeCCC-CEEEEEecCC---eEEEEECCC
Q 023772          151 SVCLTKT---EIIGGSVDGTVRTFDIRVGRELSD--DL------GQPVNCISMSNDG-NCILASCLDS---TLRLLDRST  215 (277)
Q Consensus       151 ~~~~~~~---~~~~g~~d~~i~i~d~~~~~~~~~--~~------~~~v~~~~~s~~~-~~l~~~~~d~---~i~~wd~~~  215 (277)
                      .+.+++.   .+++++.|+.|++||++.++.+..  ..      ...+.+++|+|++ .++++++.|+   .|++||+++
T Consensus       170 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~  249 (416)
T 2pm9_A          170 SLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN  249 (416)
T ss_dssp             EEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTS
T ss_pred             EEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCC
Confidence            8887754   589999999999999998765432  12      5689999999997 6899999998   999999998


Q ss_pred             C-ceEEEEe-ccccceeeeeeEecC-CCceEEeecCCCeEEEEECcCccceeeeccCcceeEe
Q 023772          216 G-ELLQEYK-GHICKSFKTDCCLTN-SDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKL  275 (277)
Q Consensus       216 ~-~~~~~~~-~~~~~~~~~~~~~~~-~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~  275 (277)
                      + +++..+. +|..  ....++++| ++.++++|+.|+.|++||+.+++.+..+++|...|..
T Consensus       250 ~~~~~~~~~~~~~~--~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~  310 (416)
T 2pm9_A          250 ANTPLQTLNQGHQK--GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFK  310 (416)
T ss_dssp             TTSCSBCCCSCCSS--CEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCC
T ss_pred             CCCCcEEeecCccC--ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEE
Confidence            6 5666776 6753  345667888 8999999999999999999999999999999877654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.5e-36  Score=251.44  Aligned_cols=250  Identities=19%  Similarity=0.213  Sum_probs=202.2

Q ss_pred             ccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEE--EeccCccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 023772           10 EANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKT--YKSHGREVRDVHVTADNSKLISCGGDRQIFYW   87 (277)
Q Consensus        10 ~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~w   87 (277)
                      ....+.+|.++|.+++|+|++++|++++.|+.|++||+.+++....  +..|...|.+++|+|++++|++++.|+.|++|
T Consensus        44 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~  123 (372)
T 1k8k_C           44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC  123 (372)
T ss_dssp             EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEE
T ss_pred             eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEE
Confidence            4566789999999999999999999999999999999988875444  46788999999999999999999999999999


Q ss_pred             ECCCCce----eEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCcc----------------CCCcceEeeccccC
Q 023772           88 DVSTGRV----IRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRS----------------HSTEPIQIIDSFQD  147 (277)
Q Consensus        88 d~~~~~~----~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~----------------~~~~~~~~~~~~~~  147 (277)
                      |++.++.    ......|...|.+++|+|+++++++++.|+.|++||++.                ........+..+..
T Consensus       124 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (372)
T 1k8k_C          124 YFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG  203 (372)
T ss_dssp             EEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS
T ss_pred             EecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCC
Confidence            9988762    233367899999999999999999999999999999752                12234445556777


Q ss_pred             cEEEEEecCC--eEEEeecCCcEEEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCC--Cce--E
Q 023772          148 SVMSVCLTKT--EIIGGSVDGTVRTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRST--GEL--L  219 (277)
Q Consensus       148 ~~~~~~~~~~--~~~~g~~d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~--~~~--~  219 (277)
                      .+..+.++++  .+++++.|+.|++||+++++.+..  .+..++.+++|+|++.+++++ .|+.|++||+..  ++.  +
T Consensus       204 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~  282 (372)
T 1k8k_C          204 WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFG  282 (372)
T ss_dssp             CEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEEC
T ss_pred             eEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEe
Confidence            8888888654  699999999999999998775543  345689999999999877776 999999999977  421  0


Q ss_pred             ------------------------------------EEE-eccccceeeeeeE-ecCCC---ceEEeecCCCeEEEEECc
Q 023772          220 ------------------------------------QEY-KGHICKSFKTDCC-LTNSD---AHVTGGSEDGYIYFWDLV  258 (277)
Q Consensus       220 ------------------------------------~~~-~~~~~~~~~~~~~-~~~~~---~~l~sgs~d~~i~iwd~~  258 (277)
                                                          ..+ .+|...  +..++ +++++   .+|++|+.||.|++||+.
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~  360 (372)
T 1k8k_C          283 GRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNS--VSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR  360 (372)
T ss_dssp             CCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSC--EEEEEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred             eccCccccchhhhcchhhhhhhcccccccccCccccccccccccCC--cceeEEecCCCcceeeEEEecCCCceEEEEec
Confidence                                                112 255433  34444 44666   899999999999999998


Q ss_pred             Cccc
Q 023772          259 DASV  262 (277)
Q Consensus       259 ~~~~  262 (277)
                      +++.
T Consensus       361 ~~~~  364 (372)
T 1k8k_C          361 SLES  364 (372)
T ss_dssp             HHHH
T ss_pred             ChhH
Confidence            8654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.1e-36  Score=257.06  Aligned_cols=249  Identities=18%  Similarity=0.230  Sum_probs=204.2

Q ss_pred             cceeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEcCCCC-------eeEEEEeccCccEEEEEEcCCC-CEEEEEeCC
Q 023772           11 ANVLKGHEGAVLAARFNG-DGNYCLSCGKDRTIRLWNPHRG-------IHIKTYKSHGREVRDVHVTADN-SKLISCGGD   81 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~-~~~~l~s~s~d~~v~iwd~~~~-------~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~d   81 (277)
                      ...+.+|.++|.+++|+| ++++|++|+.|++|++||+.++       +.+..+.+|...|.+++|+|++ .+|++++.|
T Consensus        74 ~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d  153 (402)
T 2aq5_A           74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD  153 (402)
T ss_dssp             CCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT
T ss_pred             CceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC
Confidence            445789999999999999 9999999999999999999887       5678899999999999999998 699999999


Q ss_pred             CcEEEEECCCCceeEEe--ecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEee-ccccCc-EEEEEecC-
Q 023772           82 RQIFYWDVSTGRVIRKF--RGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQII-DSFQDS-VMSVCLTK-  156 (277)
Q Consensus        82 ~~v~~wd~~~~~~~~~~--~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~-~~~~~~~~-  156 (277)
                      ++|++||+++++.+..+  ..|...|.+++|+|++++|++++.|+.|++||++...  ....+ ..+... +..+.+.+ 
T Consensus       154 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~  231 (402)
T 2aq5_A          154 NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT--VVAEKDRPHEGTRPVHAVFVSE  231 (402)
T ss_dssp             SCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE--EEEEEECSSCSSSCCEEEECST
T ss_pred             CEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc--eeeeeccCCCCCcceEEEEcCC
Confidence            99999999999999999  8899999999999999999999999999999998643  23333 344433 55555554 


Q ss_pred             -CeEEEe---ecCCcEEEEEccCCccc----ccCCCCCeeEEEEeCCCCEEEE-EecCCeEEEEECCCCce-EEEEeccc
Q 023772          157 -TEIIGG---SVDGTVRTFDIRVGREL----SDDLGQPVNCISMSNDGNCILA-SCLDSTLRLLDRSTGEL-LQEYKGHI  226 (277)
Q Consensus       157 -~~~~~g---~~d~~i~i~d~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~-~~~d~~i~~wd~~~~~~-~~~~~~~~  226 (277)
                       ..+++|   +.|+.|++||++..+..    .......+.+++|+|++++|++ |+.|+.|++||+.+++. +..+..+.
T Consensus       232 ~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~  311 (402)
T 2aq5_A          232 GKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS  311 (402)
T ss_dssp             TEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC
T ss_pred             CcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc
Confidence             447777   68999999999876541    1234567999999999999865 55799999999998874 55555544


Q ss_pred             cceeeeeeEecCCCceEEeecCCCeEEEEECcCccce
Q 023772          227 CKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVV  263 (277)
Q Consensus       227 ~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~  263 (277)
                      .......++++|++.++++  .|+.+++|++.++.+.
T Consensus       312 ~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~~  346 (402)
T 2aq5_A          312 SKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKCE  346 (402)
T ss_dssp             CSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEEE
T ss_pred             cCCcccceEEeccccccee--cceeEEEEEcCCCcEE
Confidence            3345567789999988775  4669999999987553

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=6.7e-36  Score=264.39  Aligned_cols=262  Identities=17%  Similarity=0.248  Sum_probs=225.1

Q ss_pred             cccceeeccCCc-EEEEEEeC--CCCEEEEEeCCCcEEEEcCCCC--------eeEEEEeccCccEEEEEEcCCCCEEEE
Q 023772            9 TEANVLKGHEGA-VLAARFNG--DGNYCLSCGKDRTIRLWNPHRG--------IHIKTYKSHGREVRDVHVTADNSKLIS   77 (277)
Q Consensus         9 ~~~~~l~~H~~~-V~~~~~~~--~~~~l~s~s~d~~v~iwd~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~l~t   77 (277)
                      .....+.+|.++ |.+++|+|  ++++|++++.|++|++||+.++        +....+..|..+|.+++|+|++++|++
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  133 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV  133 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence            356678899999 99999999  9999999999999999999754        677888899999999999999999999


Q ss_pred             EeCC----CcEEEEECCCCceeEEeecccCceeEEEEecCCC-EEEEEeCCCcEEEEeCccCCCcceEeeccccC---cE
Q 023772           78 CGGD----RQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSS-VVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQD---SV  149 (277)
Q Consensus        78 ~s~d----~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~---~~  149 (277)
                      ++.+    +.|.+||  .++.+..+.+|...|.++.|+|+++ ++++++.|+.|++||+...  .....+..+..   .+
T Consensus       134 ~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~--~~~~~~~~~~~~~~~v  209 (615)
T 1pgu_A          134 VGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF--KFSASDRTHHKQGSFV  209 (615)
T ss_dssp             EECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB--EEEEEECSSSCTTCCE
T ss_pred             eccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc--ceeeeecccCCCCceE
Confidence            9988    6888887  6678889999999999999999998 8999999999999998754  34455666777   78


Q ss_pred             EEEEecCC---eEEEeecCCcEEEEEccCCccccc------CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEE
Q 023772          150 MSVCLTKT---EIIGGSVDGTVRTFDIRVGRELSD------DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQ  220 (277)
Q Consensus       150 ~~~~~~~~---~~~~g~~d~~i~i~d~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~  220 (277)
                      .++.++++   .+++++.|+.|++||+++++.+..      .+..+|.+++|+ ++++|++++.|+.|++||+++++.+.
T Consensus       210 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~  288 (615)
T 1pgu_A          210 RDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQ  288 (615)
T ss_dssp             EEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             EEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEE
Confidence            88888765   599999999999999988765432      456789999999 99999999999999999999999998


Q ss_pred             EEeccc--cceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772          221 EYKGHI--CKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL  276 (277)
Q Consensus       221 ~~~~~~--~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  276 (277)
                      .+..+.  .......+.+ +++.++++|+.||.|++||+.+++.+..+++|...|..+
T Consensus       289 ~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~  345 (615)
T 1pgu_A          289 KWTLDKQQLGNQQVGVVA-TGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITAL  345 (615)
T ss_dssp             EEECCTTCGGGCEEEEEE-EETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEE
T ss_pred             EEcCCCCcccCceeEEEe-CCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEE
Confidence            887652  1122344444 378899999999999999999999999999999888765

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.8e-37  Score=265.50  Aligned_cols=241  Identities=12%  Similarity=0.076  Sum_probs=187.9

Q ss_pred             eeeccCCcEEEEEEeCC------CCEEEEEeCCCcEEEEcCCCCee-----------EEEEeccCccEEEEEEcCCCCEE
Q 023772           13 VLKGHEGAVLAARFNGD------GNYCLSCGKDRTIRLWNPHRGIH-----------IKTYKSHGREVRDVHVTADNSKL   75 (277)
Q Consensus        13 ~l~~H~~~V~~~~~~~~------~~~l~s~s~d~~v~iwd~~~~~~-----------~~~~~~h~~~v~~~~~~~~~~~l   75 (277)
                      .+.+|.+.|.+++|+|+      +.+|++++.|++|++||+.++..           ..++.+|...|++++|+++ ..|
T Consensus       202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~l  280 (524)
T 2j04_B          202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTV  280 (524)
T ss_dssp             EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEE
T ss_pred             EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeE
Confidence            46778999999999996      57999999999999999876532           3478889999999999986 589


Q ss_pred             EEEeCCCcEEEEECCCCc-eeEEeecccCceeEE--EEecCC-CEEEEEeCCCcEEEEeCccCCCcceEeecccc--CcE
Q 023772           76 ISCGGDRQIFYWDVSTGR-VIRKFRGHESEVNAV--KFNEYS-SVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQ--DSV  149 (277)
Q Consensus        76 ~t~s~d~~v~~wd~~~~~-~~~~~~~h~~~v~~i--~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~  149 (277)
                      ++|+.||+|++||+++++ +...+.+|..+|.++  .+++++ .+|+||+.|++|++||++.......  +..+.  ..+
T Consensus       281 asgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~--~~~~~~~~~v  358 (524)
T 2j04_B          281 VCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKT--TVSRFRGSNL  358 (524)
T ss_dssp             EEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCE--EEEECSCCSC
T ss_pred             EEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccc--cccccccCcc
Confidence            999999999999999764 456788999999999  567887 8999999999999999986433222  22222  234


Q ss_pred             EEEEecC--CeEEEeecCCcEEEEEccCCcccc--cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCc--------
Q 023772          150 MSVCLTK--TEIIGGSVDGTVRTFDIRVGRELS--DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGE--------  217 (277)
Q Consensus       150 ~~~~~~~--~~~~~g~~d~~i~i~d~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~--------  217 (277)
                      .++.++|  ..+++++.|++|++||++.+..+.  ..+...|++++|+|+|++|++|+.|++|++||+..+.        
T Consensus       359 ~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~  438 (524)
T 2j04_B          359 VPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSS  438 (524)
T ss_dssp             CCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC----
T ss_pred             cceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCc
Confidence            4555554  468999999999999999876533  2466789999999999999999999999999863210        


Q ss_pred             ------eE------------------------------EEEeccccceeeeeeEecCCC---ceEEeecCCCeEEEEECc
Q 023772          218 ------LL------------------------------QEYKGHICKSFKTDCCLTNSD---AHVTGGSEDGYIYFWDLV  258 (277)
Q Consensus       218 ------~~------------------------------~~~~~~~~~~~~~~~~~~~~~---~~l~sgs~d~~i~iwd~~  258 (277)
                            .+                              ..+.+|.  ..+..++|+|++   .++|+|+.||.||||++.
T Consensus       439 ~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~--~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~  516 (524)
T 2j04_B          439 ATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHG--INITCTKWNETSAGGKCYAFSNSAGLLTLEYLS  516 (524)
T ss_dssp             --CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CC--CSCCCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred             cceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCC--ceEEEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence                  01                              1111222  223456788985   489999999999999986

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-37  Score=269.13  Aligned_cols=240  Identities=14%  Similarity=0.093  Sum_probs=191.8

Q ss_pred             cCCcEEEEEEeCCC---------CEEEE-------------------EeCCCcEEEEcCCCCee----EEEEeccCccEE
Q 023772           17 HEGAVLAARFNGDG---------NYCLS-------------------CGKDRTIRLWNPHRGIH----IKTYKSHGREVR   64 (277)
Q Consensus        17 H~~~V~~~~~~~~~---------~~l~s-------------------~s~d~~v~iwd~~~~~~----~~~~~~h~~~v~   64 (277)
                      +.++|.+++|+|++         ++||+                   ++.|++|+|||+.+++.    ..++..|.+.|.
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~  211 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW  211 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence            67788888888775         45554                   66889999999877653    245677889999


Q ss_pred             EEEEcCC------CCEEEEEeCCCcEEEEECCCCce-----------eEEeecccCceeEEEEecCCCEEEEEeCCCcEE
Q 023772           65 DVHVTAD------NSKLISCGGDRQIFYWDVSTGRV-----------IRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLR  127 (277)
Q Consensus        65 ~~~~~~~------~~~l~t~s~d~~v~~wd~~~~~~-----------~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~  127 (277)
                      +++|+|+      +.+|++++.|++|++||+.+++.           ..++.+|...|.+++|+++ ..|++|+.||+|+
T Consensus       212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~  290 (524)
T 2j04_B          212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVA  290 (524)
T ss_dssp             EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEE
T ss_pred             EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEE
Confidence            9999996      57999999999999999986632           3467889999999999986 4899999999999


Q ss_pred             EEeCccCCCcceEeeccccCcEEEE--EecC---CeEEEeecCCcEEEEEccCCcccccC--C--CCCeeEEEEeCCCCE
Q 023772          128 AWDCRSHSTEPIQIIDSFQDSVMSV--CLTK---TEIIGGSVDGTVRTFDIRVGRELSDD--L--GQPVNCISMSNDGNC  198 (277)
Q Consensus       128 iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~g~~d~~i~i~d~~~~~~~~~~--~--~~~v~~~~~s~~~~~  198 (277)
                      +||++... .+...+..|...|.++  .+.+   ..+++|+.|++|++||+++++.....  +  ...+.+++|+|+++.
T Consensus       291 lWD~~~~~-~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~  369 (524)
T 2j04_B          291 EFDLTDPE-VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYS  369 (524)
T ss_dssp             EEETTBCS-SCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTE
T ss_pred             EEECCCCC-CceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCe
Confidence            99998643 2344566788889888  4444   45899999999999999887643321  1  135789999999999


Q ss_pred             EEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCc
Q 023772          199 ILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDA  260 (277)
Q Consensus       199 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~  260 (277)
                      +++++.|++|++||++++.++..+.+|...  +..++++|++.+|++|+.||+|++||+...
T Consensus       370 l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~--V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~  429 (524)
T 2j04_B          370 YIYSDGASSLRAVPSRAAFAVHPLVSRETT--ITAIGVSRLHPMVLAGSADGSLIITNAARR  429 (524)
T ss_dssp             EEEECSSSEEEEEETTCTTCCEEEEECSSC--EEEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred             EEEeCCCCcEEEEECcccccceeeecCCCc--eEEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence            999999999999999999888888888654  456778999999999999999999998754

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-35  Score=239.96  Aligned_cols=246  Identities=18%  Similarity=0.255  Sum_probs=205.8

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCC---CeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHR---GIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYW   87 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~w   87 (277)
                      ...+..|.++|.+++|+|+++++++++.|+.+++|++..   ++....+..|...|.++.|  +++++++++.|+.|++|
T Consensus        52 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~  129 (313)
T 3odt_A           52 GTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVW  129 (313)
T ss_dssp             EEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEE
T ss_pred             EEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEE
Confidence            456778999999999999999999999999999999764   3567788999999999999  57799999999999999


Q ss_pred             ECCCCceeEEeecccCceeEEEEec-CCCEEEEEeCCCcEEEEeCccCCCcceEeecc-ccCcEEEEEecCC-eEEEeec
Q 023772           88 DVSTGRVIRKFRGHESEVNAVKFNE-YSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDS-FQDSVMSVCLTKT-EIIGGSV  164 (277)
Q Consensus        88 d~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~g~~  164 (277)
                      |  .++.+..+..|..++.++.+.+ +++.+++++.|+.|++||...    ....+.. +...+..+.+.+. .+++++.
T Consensus       130 d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  203 (313)
T 3odt_A          130 K--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK----VIKTFSGIHNDVVRHLAVVDDGHFISCSN  203 (313)
T ss_dssp             E--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE----EEEEECSSCSSCEEEEEEEETTEEEEEET
T ss_pred             c--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc----eEEEEeccCcccEEEEEEcCCCeEEEccC
Confidence            9  6778888999999999999988 899999999999999999432    2333443 6677777777643 3999999


Q ss_pred             CCcEEEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCce
Q 023772          165 DGTVRTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAH  242 (277)
Q Consensus       165 d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (277)
                      |+.|++||+++++.+..  .+..++++++|+|++ .|++++.|+.|++||+++++++..+..|..  ....++++|++. 
T Consensus       204 dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~~~-  279 (313)
T 3odt_A          204 DGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAI--SIWSVDCMSNGD-  279 (313)
T ss_dssp             TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSS--CEEEEEECTTSC-
T ss_pred             CCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCc--eEEEEEEccCCC-
Confidence            99999999998776543  356789999999999 589999999999999999999999988754  345667899888 


Q ss_pred             EEeecCCCeEEEEECcCccceeeecc
Q 023772          243 VTGGSEDGYIYFWDLVDASVVAKFKA  268 (277)
Q Consensus       243 l~sgs~d~~i~iwd~~~~~~~~~~~~  268 (277)
                      +++++.||.|++||+++++.+.....
T Consensus       280 ~~~~~~dg~i~iw~~~~~~~~~~~~~  305 (313)
T 3odt_A          280 IIVGSSDNLVRIFSQEKSRWASEDEI  305 (313)
T ss_dssp             EEEEETTSCEEEEESCGGGCCC----
T ss_pred             EEEEeCCCcEEEEeCCCCceeehhhh
Confidence            55688999999999999988766553

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1e-36  Score=259.89  Aligned_cols=249  Identities=14%  Similarity=0.161  Sum_probs=189.2

Q ss_pred             eeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEcCCCCeeEEEEecc--CccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 023772           13 VLKGHEGAVLAARFNG-DGNYCLSCGKDRTIRLWNPHRGIHIKTYKSH--GREVRDVHVTADNSKLISCGGDRQIFYWDV   89 (277)
Q Consensus        13 ~l~~H~~~V~~~~~~~-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~   89 (277)
                      .+.+|.++|++++|+| ++++|+|||.|++|++||+.++........|  ...+.+++|++++++|++|+.|+.|++||+
T Consensus       159 ~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~  238 (435)
T 4e54_B          159 KGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNM  238 (435)
T ss_dssp             CCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEES
T ss_pred             EccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeecc
Confidence            3568999999999998 7899999999999999999876544333333  345789999999999999999999999998


Q ss_pred             CCCceeEEeecccCceeEEEEecCCC-EEEEEeCCCcEEEEeCccCCCcc-eEeeccccCcEEEEEecC--CeEEEeecC
Q 023772           90 STGRVIRKFRGHESEVNAVKFNEYSS-VVVSAGYDQSLRAWDCRSHSTEP-IQIIDSFQDSVMSVCLTK--TEIIGGSVD  165 (277)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~g~~d  165 (277)
                      +. +.+.++.+|..+|.+++|+|++. ++++++.|++|++||++...... ......|...+.++.+++  ..+++++.|
T Consensus       239 ~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D  317 (435)
T 4e54_B          239 DG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQK  317 (435)
T ss_dssp             SS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESS
T ss_pred             Cc-ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCC
Confidence            64 56678899999999999999876 78899999999999998654332 223345778888888865  469999999


Q ss_pred             CcEEEEEccCCcccccC--C----C--CCeeEEEEeCCCCEEEEEe------------cCCeEEEEECCCCceEEEEecc
Q 023772          166 GTVRTFDIRVGRELSDD--L----G--QPVNCISMSNDGNCILASC------------LDSTLRLLDRSTGELLQEYKGH  225 (277)
Q Consensus       166 ~~i~i~d~~~~~~~~~~--~----~--~~v~~~~~s~~~~~l~~~~------------~d~~i~~wd~~~~~~~~~~~~~  225 (277)
                      +.|++||++.+......  +    .  ..+....|+|++.++++++            .++.|++||..+++++..+..+
T Consensus       318 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~  397 (435)
T 4e54_B          318 SEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP  397 (435)
T ss_dssp             SCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCS
T ss_pred             CEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCC
Confidence            99999999876543211  1    1  1223346677776666654            3467999999999998877543


Q ss_pred             ccceeeeeeEecCCCceEEeecCCCeEEEEECcCccce
Q 023772          226 ICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVV  263 (277)
Q Consensus       226 ~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~  263 (277)
                      ....+...+.|+|++.+|++|+ |+.|+|||+++++..
T Consensus       398 ~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r  434 (435)
T 4e54_B          398 ESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR  434 (435)
T ss_dssp             SCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred             CCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence            2222223346899999999987 889999999998764

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.1e-35  Score=251.02  Aligned_cols=253  Identities=16%  Similarity=0.251  Sum_probs=209.7

Q ss_pred             ccCCcEE--EEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEec-cCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 023772           16 GHEGAVL--AARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKS-HGREVRDVHVTADNSKLISCGGDRQIFYWDVSTG   92 (277)
Q Consensus        16 ~H~~~V~--~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~   92 (277)
                      +|...+.  ++.|+  +..+++++.|+.|++||..+++....+.. |...|.+++|+|++++|++|+.||.|++||++++
T Consensus        89 ~~~~~~~~~~~~~s--~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  166 (401)
T 4aez_A           89 GIIDDYYLNLLDWS--NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ  166 (401)
T ss_dssp             TCCCCTTCBCEEEC--TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             CCcCCceEEEEeec--CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC
Confidence            6766644  45555  46788999999999999999988887776 7889999999999999999999999999999999


Q ss_pred             ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEeecCCcEEE
Q 023772           93 RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRT  170 (277)
Q Consensus        93 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~d~~i~i  170 (277)
                      +.+..+.+|...|.++.|+  ++.+++++.||.|++||++... .....+..+...+..+.+++  ..+++|+.|+.|++
T Consensus       167 ~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~i  243 (401)
T 4aez_A          167 TKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIAN-HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQI  243 (401)
T ss_dssp             CEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSS-CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             eEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCc-ceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEE
Confidence            9999999999999999995  5799999999999999998533 34555667888888888865  45999999999999


Q ss_pred             EEccCCccccc--CCCCCeeEEEEeCCCC-EEEEEe--cCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEe
Q 023772          171 FDIRVGRELSD--DLGQPVNCISMSNDGN-CILASC--LDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTG  245 (277)
Q Consensus       171 ~d~~~~~~~~~--~~~~~v~~~~~s~~~~-~l~~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  245 (277)
                      ||++.++....  .+...|.+++|+|++. .+++++  .|+.|++||+.+++++..+..+   .....++++|++.++++
T Consensus       244 wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~  320 (401)
T 4aez_A          244 WDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG---SQVTSLIWSPHSKEIMS  320 (401)
T ss_dssp             EETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS---SCEEEEEECSSSSEEEE
T ss_pred             ccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC---CcEEEEEECCCCCeEEE
Confidence            99998765433  4567899999999775 455544  6999999999999998888643   23566788999999988


Q ss_pred             --ecCCCeEEEEECcCcccee--eeccCcceeEee
Q 023772          246 --GSEDGYIYFWDLVDASVVA--KFKAHSLVVKLL  276 (277)
Q Consensus       246 --gs~d~~i~iwd~~~~~~~~--~~~~h~~~v~~~  276 (277)
                        |+.||.|++||+.+++...  .+.+|...|..+
T Consensus       321 ~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~  355 (401)
T 4aez_A          321 THGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYS  355 (401)
T ss_dssp             EECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEE
T ss_pred             EeecCCCcEEEEecCCccceeEEEecCCCCCEEEE
Confidence              6699999999999966554  466888777543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=7.2e-36  Score=254.61  Aligned_cols=243  Identities=24%  Similarity=0.479  Sum_probs=201.8

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~   90 (277)
                      ...+.+|.++|.+++|  ++++|++|+.||+|++||+.+++.+..+..|...|.+++|+  ++.+++|+.|+.|++||+.
T Consensus       166 ~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~  241 (435)
T 1p22_A          166 KRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMA  241 (435)
T ss_dssp             EEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECS
T ss_pred             EEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCC
Confidence            4567899999999998  78899999999999999999999999999999999999997  4599999999999999999


Q ss_pred             CCcee---EEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCCc
Q 023772           91 TGRVI---RKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGT  167 (277)
Q Consensus        91 ~~~~~---~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~  167 (277)
                      +++..   ..+.+|...|.++.+  +++++++|+.||.|++||+++.  .....+..+...+.++.+++..+++|+.||.
T Consensus       242 ~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~  317 (435)
T 1p22_A          242 SPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC--EFVRTLNGHKRGIACLQYRDRLVVSGSSDNT  317 (435)
T ss_dssp             SSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTC--CEEEEEECCSSCEEEEEEETTEEEEEETTSC
T ss_pred             CCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcC--cEEEEEcCCCCcEEEEEeCCCEEEEEeCCCe
Confidence            87755   677899999999999  6789999999999999999865  3455667788889999999999999999999


Q ss_pred             EEEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCc---------eEEEEeccccceeeeeeEe
Q 023772          168 VRTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGE---------LLQEYKGHICKSFKTDCCL  236 (277)
Q Consensus       168 i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~---------~~~~~~~~~~~~~~~~~~~  236 (277)
                      |++||+++++.+..  .+...+.+++|  ++.+|++|+.||.|++||+.+++         ++..+.+|....  ..+.+
T Consensus       318 i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v--~~l~~  393 (435)
T 1p22_A          318 IRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRV--FRLQF  393 (435)
T ss_dssp             EEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCC--CCEEE
T ss_pred             EEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCe--EEEEe
Confidence            99999998876543  35568999888  68899999999999999997665         788888886543  33344


Q ss_pred             cCCCceEEeecCCCeEEEEECcCccceeeec
Q 023772          237 TNSDAHVTGGSEDGYIYFWDLVDASVVAKFK  267 (277)
Q Consensus       237 ~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~  267 (277)
                        ++.++++|+.||.|++||+.+........
T Consensus       394 --~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~  422 (435)
T 1p22_A          394 --DEFQIVSSSHDDTILIWDFLNDPAAQAEP  422 (435)
T ss_dssp             --CSSCEEECCSSSEEEEEC-----------
T ss_pred             --CCCEEEEEeCCCEEEEEECCCCCCcccCC
Confidence              78899999999999999999876655443

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=5e-35  Score=248.38  Aligned_cols=248  Identities=15%  Similarity=0.253  Sum_probs=204.9

Q ss_pred             EEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEe--ccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe
Q 023772           21 VLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYK--SHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKF   98 (277)
Q Consensus        21 V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~   98 (277)
                      .+.|+|+++ ++|+.| .|++|+|||..+++....+.  +|...|++++|+|++++|++|+.|++|++||++++++++.+
T Consensus       108 ~~~l~wS~~-n~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~  185 (420)
T 4gga_A          108 LNLVDWSSG-NVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM  185 (420)
T ss_dssp             CBCEEECTT-SEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             ceeEEECCC-CEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEE
Confidence            456899975 466665 59999999999998877665  56778999999999999999999999999999999999999


Q ss_pred             ecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEeecCCcEEEEEccCC
Q 023772           99 RGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVG  176 (277)
Q Consensus        99 ~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~d~~i~i~d~~~~  176 (277)
                      .+|...+.++.++  +..+++|+.|+.+++||.+... ..+..+..+...+..+.+.+  ..+++++.|+.+++||...+
T Consensus       186 ~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~-~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~  262 (420)
T 4gga_A          186 TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAE-HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG  262 (420)
T ss_dssp             CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSS-CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCC
T ss_pred             eCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccc-eeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccc
Confidence            9999999988775  5799999999999999987643 34455667777777777654  56999999999999999876


Q ss_pred             ccc------ccCCCCCeeEEEEeCCCC-EEEE--EecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEe--
Q 023772          177 REL------SDDLGQPVNCISMSNDGN-CILA--SCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTG--  245 (277)
Q Consensus       177 ~~~------~~~~~~~v~~~~~s~~~~-~l~~--~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s--  245 (277)
                      +..      ...+...|.+++|+|.+. .+++  |+.|++|++||+.+++++..+..+.   ....+.+++++..+++  
T Consensus       263 ~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~---~v~~~~~~~~~~~lv~~s  339 (420)
T 4gga_A          263 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS---QVCSILWSPHYKELISGH  339 (420)
T ss_dssp             SSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS---CEEEEEEETTTTEEEEEE
T ss_pred             cccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc---ceeeeeecCCCCeEEEEE
Confidence            532      123456899999999764 4444  4579999999999999998887663   3455677888887765  


Q ss_pred             ecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772          246 GSEDGYIYFWDLVDASVVAKFKAHSLVVKLL  276 (277)
Q Consensus       246 gs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  276 (277)
                      |+.|+.|++||+.+++++.++++|...|..+
T Consensus       340 g~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l  370 (420)
T 4gga_A          340 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSL  370 (420)
T ss_dssp             CTTTCCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             ecCCCEEEEEECCCCcEEEEEcCCCCCEEEE
Confidence            4589999999999999999999999988765

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=6e-36  Score=254.80  Aligned_cols=249  Identities=22%  Similarity=0.308  Sum_probs=208.4

Q ss_pred             ceeeccCCcEEEEEEeCC-CCEEEEEeCCCcEEEEcCCC----------CeeEEEEeccCccEEEEEEcCCCC-EEEEEe
Q 023772           12 NVLKGHEGAVLAARFNGD-GNYCLSCGKDRTIRLWNPHR----------GIHIKTYKSHGREVRDVHVTADNS-KLISCG   79 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~~-~~~l~s~s~d~~v~iwd~~~----------~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s   79 (277)
                      ..+.+|.++|++++|+|+ +.+|++++.||.|++||+.+          ......+.+|...|.+++|+|++. +|++|+
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            445789999999999997 78999999999999999876          567888999999999999999988 999999


Q ss_pred             CCCcEEEEECCCCce-------eEEeecccCceeEEEEec-CCCEEEEEeCCCcEEEEeCccCC-CcceEeeccccCcEE
Q 023772           80 GDRQIFYWDVSTGRV-------IRKFRGHESEVNAVKFNE-YSSVVVSAGYDQSLRAWDCRSHS-TEPIQIIDSFQDSVM  150 (277)
Q Consensus        80 ~d~~v~~wd~~~~~~-------~~~~~~h~~~v~~i~~~~-~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~  150 (277)
                      .||+|++||+.++..       ...+.+|...|.+++|+| ++.+|++++.|+.|++||++... ......+..+...+.
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  281 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN  281 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence            999999999987322       456778999999999999 67899999999999999998653 234445567788888


Q ss_pred             EEEecCC---eEEEeecCCcEEEEEccCCcc-cc--cCCCCCeeEEEEeCCCC-EEEEEecCCeEEEEECCC--------
Q 023772          151 SVCLTKT---EIIGGSVDGTVRTFDIRVGRE-LS--DDLGQPVNCISMSNDGN-CILASCLDSTLRLLDRST--------  215 (277)
Q Consensus       151 ~~~~~~~---~~~~g~~d~~i~i~d~~~~~~-~~--~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~~wd~~~--------  215 (277)
                      ++.+++.   .+++|+.||.|++||++.... +.  ..+...|.+++|+|++. +|++++.|+.|++||+..        
T Consensus       282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  361 (430)
T 2xyi_A          282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE  361 (430)
T ss_dssp             EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHH
T ss_pred             EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcc
Confidence            8888764   388999999999999987432 22  23567899999999985 689999999999999976        


Q ss_pred             ------CceEEEEeccccceeeeeeEecCCCc-eEEeecCCCeEEEEECcCccc
Q 023772          216 ------GELLQEYKGHICKSFKTDCCLTNSDA-HVTGGSEDGYIYFWDLVDASV  262 (277)
Q Consensus       216 ------~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sgs~d~~i~iwd~~~~~~  262 (277)
                            .+++..+.+|..  .+..++++|++. ++++++.||.|++|++.+..+
T Consensus       362 ~~~~~~~~~~~~~~~h~~--~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~~  413 (430)
T 2xyi_A          362 DAEDGPPELLFIHGGHTA--KISDFSWNPNEPWIICSVSEDNIMQVWQMAENVY  413 (430)
T ss_dssp             HHHHCCTTEEEECCCCSS--CEEEEEECSSSTTEEEEEETTSEEEEEEECHHHH
T ss_pred             ccccCCcceEEEcCCCCC--CceEEEECCCCCCEEEEEECCCCEEEeEcccccc
Confidence                  256666667743  356678899998 899999999999999987644

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.5e-35  Score=262.12  Aligned_cols=247  Identities=13%  Similarity=0.185  Sum_probs=218.2

Q ss_pred             eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC----eeEEEEeccCcc-EEEEEEcC--CCCEEEEEeCCCcEEEE
Q 023772           15 KGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG----IHIKTYKSHGRE-VRDVHVTA--DNSKLISCGGDRQIFYW   87 (277)
Q Consensus        15 ~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~----~~~~~~~~h~~~-v~~~~~~~--~~~~l~t~s~d~~v~~w   87 (277)
                      ..|.+.|.+++|+|+|++|++++ |+.+++||+.++    +....+.+|... |++++|+|  ++++|++++.|+.|++|
T Consensus        15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw   93 (615)
T 1pgu_A           15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVW   93 (615)
T ss_dssp             CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEE
T ss_pred             CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEE
Confidence            57999999999999999999988 789999999998    889999999999 99999999  99999999999999999


Q ss_pred             ECCCC--------ceeEEeecccCceeEEEEecCCCEEEEEeCC----CcEEEEeCccCCCcceEeeccccCcEEEEEec
Q 023772           88 DVSTG--------RVIRKFRGHESEVNAVKFNEYSSVVVSAGYD----QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT  155 (277)
Q Consensus        88 d~~~~--------~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  155 (277)
                      |+.++        +.+..+..|..+|.+++|+|+++++++++.|    +.|++||..    .....+..+...+..+.++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~----~~~~~~~~~~~~v~~~~~~  169 (615)
T 1pgu_A           94 GWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG----NSLGEVSGHSQRINACHLK  169 (615)
T ss_dssp             EEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC----CEEEECCSCSSCEEEEEEC
T ss_pred             eCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECC----CcceeeecCCccEEEEEEC
Confidence            99754        6777888999999999999999999999988    799999832    3455667788889999888


Q ss_pred             CC---eEEEeecCCcEEEEEccCCccccc--CCCC---CeeEEEEeCC-CCEEEEEecCCeEEEEECCCCceEEEE-e--
Q 023772          156 KT---EIIGGSVDGTVRTFDIRVGRELSD--DLGQ---PVNCISMSND-GNCILASCLDSTLRLLDRSTGELLQEY-K--  223 (277)
Q Consensus       156 ~~---~~~~g~~d~~i~i~d~~~~~~~~~--~~~~---~v~~~~~s~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~-~--  223 (277)
                      +.   .+++++.|+.|++||++.++....  .+..   .+.+++|+|+ +++|++++.|+.|++||+++++.+..+ .  
T Consensus       170 ~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  249 (615)
T 1pgu_A          170 QSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQ  249 (615)
T ss_dssp             SSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTT
T ss_pred             CCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccc
Confidence            75   589999999999999988765433  3445   8999999999 999999999999999999999999888 4  


Q ss_pred             -ccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccC
Q 023772          224 -GHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAH  269 (277)
Q Consensus       224 -~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h  269 (277)
                       +|..  ....++++ ++.++++++.|+.|++||+.+++.+..+..|
T Consensus       250 ~~~~~--~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~  293 (615)
T 1pgu_A          250 EPVQG--GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLD  293 (615)
T ss_dssp             BCCCS--CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             cccCC--ceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence             5643  34556677 8999999999999999999999999999877

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.6e-36  Score=253.01  Aligned_cols=242  Identities=12%  Similarity=0.085  Sum_probs=185.0

Q ss_pred             eeeccCCcEEEEEEeCCCCEEEEE-----------eCCCcEEEEcCCCCee-EE---EE-----eccCccEEEEEEcCCC
Q 023772           13 VLKGHEGAVLAARFNGDGNYCLSC-----------GKDRTIRLWNPHRGIH-IK---TY-----KSHGREVRDVHVTADN   72 (277)
Q Consensus        13 ~l~~H~~~V~~~~~~~~~~~l~s~-----------s~d~~v~iwd~~~~~~-~~---~~-----~~h~~~v~~~~~~~~~   72 (277)
                      .|.+|+..|.++++++  +.+++|           +.|+++|+|+..+... +.   ..     ..+...+.+++|+|++
T Consensus        68 ~l~~~~~~v~s~~~~~--~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg  145 (365)
T 4h5i_A           68 ALEDNDDSPTAIDASK--GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG  145 (365)
T ss_dssp             ECCTTSCCCCEEEEET--TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS
T ss_pred             EccCCCCceEEEEeCC--CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC
Confidence            4678999998887764  455554           5678899998755422 11   11     1234568999999999


Q ss_pred             CEEEEE--eCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEE
Q 023772           73 SKLISC--GGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVM  150 (277)
Q Consensus        73 ~~l~t~--s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  150 (277)
                      ++++++  +.|++|++||+++++++..+. |..+|.+++|+|+++++++++.|+ +.+|+..............+...+.
T Consensus       146 ~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~v~  223 (365)
T 4h5i_A          146 TVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWSLS  223 (365)
T ss_dssp             SCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEEEE
T ss_pred             CEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCcceeeeecCCCCCCEE
Confidence            998654  478999999999999988886 778899999999999999998655 5566655443322233344566677


Q ss_pred             EEEecC--CeEEEeecCC----cEEEEEccCCccc------ccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCce
Q 023772          151 SVCLTK--TEIIGGSVDG----TVRTFDIRVGREL------SDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGEL  218 (277)
Q Consensus       151 ~~~~~~--~~~~~g~~d~----~i~i~d~~~~~~~------~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~  218 (277)
                      .+.+++  ..+++++.|+    .++.||+......      ...+..+|++++|+|+|++|++|+.|++|+|||++++++
T Consensus       224 ~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~  303 (365)
T 4h5i_A          224 KINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSM  303 (365)
T ss_dssp             EEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEE
T ss_pred             EEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcE
Confidence            766654  5588888887    5888998765421      123456899999999999999999999999999999999


Q ss_pred             EEEE-eccccceeeeeeEecCCCceEEeecCCCeEEEEECcCc
Q 023772          219 LQEY-KGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDA  260 (277)
Q Consensus       219 ~~~~-~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~  260 (277)
                      +..+ .+|..  .+..++|+|++++|++||.|++|||||++..
T Consensus       304 ~~~~~~gH~~--~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          304 SKIFKQAHSF--AITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEETTSSSS--CEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EEEecCcccC--CEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            9886 57854  4567789999999999999999999999753

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.5e-35  Score=250.74  Aligned_cols=254  Identities=15%  Similarity=0.119  Sum_probs=207.4

Q ss_pred             CCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCe---eEEEEecc-----------------------------------
Q 023772           18 EGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI---HIKTYKSH-----------------------------------   59 (277)
Q Consensus        18 ~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~---~~~~~~~h-----------------------------------   59 (277)
                      ..|+.+++|+++|++|+++ .++.|++||+.+|+   .+..+..+                                   
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            4688999999999976665 57899999999888   66655533                                   


Q ss_pred             -------------------CccEEEEEEcCCCCEE-EEEeCCCcEEEEECC--CCceeEEee--cccCceeEEEEecCCC
Q 023772           60 -------------------GREVRDVHVTADNSKL-ISCGGDRQIFYWDVS--TGRVIRKFR--GHESEVNAVKFNEYSS  115 (277)
Q Consensus        60 -------------------~~~v~~~~~~~~~~~l-~t~s~d~~v~~wd~~--~~~~~~~~~--~h~~~v~~i~~~~~~~  115 (277)
                                         ...|++++|+|++++| ++++.|+.|++||+.  +++++..+.  .|...|.+++|+|+++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  162 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT  162 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence                               3369999999999996 899999999999999  888888876  5678999999999999


Q ss_pred             EEEEEeCCCcEEEEeCccCCCc--ceEeeccccCcEEEEEecCC-----eEEEeecCCcEEEEEccCCccccc---CCCC
Q 023772          116 VVVSAGYDQSLRAWDCRSHSTE--PIQIIDSFQDSVMSVCLTKT-----EIIGGSVDGTVRTFDIRVGRELSD---DLGQ  185 (277)
Q Consensus       116 ~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~~g~~d~~i~i~d~~~~~~~~~---~~~~  185 (277)
                      +|++++.||.+++|++......  ....+..+...+.++.++++     .+++|+.|++|++||+++++.+..   .+..
T Consensus       163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~  242 (450)
T 2vdu_B          163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH  242 (450)
T ss_dssp             EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSS
T ss_pred             EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCC
Confidence            9999999999999998765432  22244567778888887765     699999999999999998765533   4567


Q ss_pred             CeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccc-----------------------cceeeeeeEecCCCce
Q 023772          186 PVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHI-----------------------CKSFKTDCCLTNSDAH  242 (277)
Q Consensus       186 ~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~  242 (277)
                      .|.+++|+ ++++|++++.|+.|++||+++++++..+..+.                       .......++++|++.+
T Consensus       243 ~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~  321 (450)
T 2vdu_B          243 FVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPF  321 (450)
T ss_dssp             CEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSE
T ss_pred             ceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCE
Confidence            89999999 99999999999999999999999888876431                       1122345678899999


Q ss_pred             EEeec-CCCeEEEEEC--cCc---cceeeeccCcceeE
Q 023772          243 VTGGS-EDGYIYFWDL--VDA---SVVAKFKAHSLVVK  274 (277)
Q Consensus       243 l~sgs-~d~~i~iwd~--~~~---~~~~~~~~h~~~v~  274 (277)
                      +++++ .|+.|++|++  .++   +.+..++.| ..|.
T Consensus       322 l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~  358 (450)
T 2vdu_B          322 VAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVI  358 (450)
T ss_dssp             EEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEE
T ss_pred             EEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceE
Confidence            99888 8999999999  665   777888888 4443

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=3.2e-34  Score=233.71  Aligned_cols=265  Identities=14%  Similarity=0.232  Sum_probs=209.9

Q ss_pred             CCccccccceeec--cCC--cEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEe--ccCccEEEEEEcCCCCEEEE
Q 023772            4 SDLPRTEANVLKG--HEG--AVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYK--SHGREVRDVHVTADNSKLIS   77 (277)
Q Consensus         4 ~~~~~~~~~~l~~--H~~--~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~t   77 (277)
                      |.+|..+..+|.+  ...  -.++|+||+++ +|++ +.|++|+|||+.++++++.+.  +|...|++++|+|++++|++
T Consensus         7 r~~p~~p~rvldap~~~~d~y~~~l~WS~~~-~lAv-g~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~s   84 (318)
T 4ggc_A            7 RYIPSLPDRILDAPEIRNDYYLNLVDWSSGN-VLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAV   84 (318)
T ss_dssp             CCCCSSCSEEEECTTCCCCTTCBCEEECTTS-EEEE-EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEE
T ss_pred             cccCCCCCEEeeCCCCcccccceEEEECCCC-EEEE-EeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEE
Confidence            5667777667753  222  24679999886 6655 569999999999999888775  57778999999999999999


Q ss_pred             EeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec--
Q 023772           78 CGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT--  155 (277)
Q Consensus        78 ~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--  155 (277)
                      |+.|++|++||++++++++.+.+|...+.++.+  ++..+++++.++.+++|+..... .....+..+...+..+.+.  
T Consensus        85 gs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  161 (318)
T 4ggc_A           85 GTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAE-HHVATLSGHSQEVCGLRWAPD  161 (318)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS-CEEEEEECCSSCEEEEEECTT
T ss_pred             EECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCc-eeEEEEcCccCceEEEEEcCC
Confidence            999999999999999999999999998876555  46799999999999999987543 3445556677777776665  


Q ss_pred             CCeEEEeecCCcEEEEEccCCcccc------cCCCCCeeEEEEeCCCCEE---EEEecCCeEEEEECCCCceEEEEeccc
Q 023772          156 KTEIIGGSVDGTVRTFDIRVGRELS------DDLGQPVNCISMSNDGNCI---LASCLDSTLRLLDRSTGELLQEYKGHI  226 (277)
Q Consensus       156 ~~~~~~g~~d~~i~i~d~~~~~~~~------~~~~~~v~~~~~s~~~~~l---~~~~~d~~i~~wd~~~~~~~~~~~~~~  226 (277)
                      +..+++++.|++|++||+++++...      ......+.++.++|++..+   ++++.++.|++||............+.
T Consensus       162 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~  241 (318)
T 4ggc_A          162 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS  241 (318)
T ss_dssp             SSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSS
T ss_pred             CCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccccee
Confidence            4569999999999999998765322      2345679999999976543   456788999999999887776654432


Q ss_pred             cceeeeeeEecCCCceEEe--ecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772          227 CKSFKTDCCLTNSDAHVTG--GSEDGYIYFWDLVDASVVAKFKAHSLVVKLL  276 (277)
Q Consensus       227 ~~~~~~~~~~~~~~~~l~s--gs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  276 (277)
                         ....+++++++..+++  |+.|+.|++||+.++++++++++|...|..+
T Consensus       242 ---~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l  290 (318)
T 4ggc_A          242 ---QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSL  290 (318)
T ss_dssp             ---CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             ---eeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEE
Confidence               2344567787776654  5689999999999999999999999988765

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.2e-36  Score=252.73  Aligned_cols=204  Identities=13%  Similarity=0.146  Sum_probs=163.1

Q ss_pred             cccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCe---eEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEE
Q 023772            9 TEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI---HIKTYKSHGREVRDVHVTADNSKLISCGGDRQIF   85 (277)
Q Consensus         9 ~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~   85 (277)
                      .....+.+|.++|.+++|+|++++|++++.|++|++||+.++.   ....+..|...|.+++|+|++++|++++.|+.|+
T Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  125 (377)
T 3dwl_C           46 KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVIS  125 (377)
T ss_dssp             EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEE
T ss_pred             EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEE
Confidence            3456678999999999999999999999999999999998876   6777888999999999999999999999999999


Q ss_pred             EEECCCCc---eeEEeec-ccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCC----------------CcceEeeccc
Q 023772           86 YWDVSTGR---VIRKFRG-HESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHS----------------TEPIQIIDSF  145 (277)
Q Consensus        86 ~wd~~~~~---~~~~~~~-h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~----------------~~~~~~~~~~  145 (277)
                      +||+++++   +...+.. |...|.+++|+|+++++++++.|++|++||++...                ......+ .+
T Consensus       126 iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  204 (377)
T 3dwl_C          126 VCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PS  204 (377)
T ss_dssp             ECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CC
T ss_pred             EEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cC
Confidence            99999877   4677877 99999999999999999999999999999985321                1122223 66


Q ss_pred             cCcEEEEEecCC--eEEEeecCCcEEEEEccCCcc----ccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECC
Q 023772          146 QDSVMSVCLTKT--EIIGGSVDGTVRTFDIRVGRE----LSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRS  214 (277)
Q Consensus       146 ~~~~~~~~~~~~--~~~~g~~d~~i~i~d~~~~~~----~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~  214 (277)
                      ...+..+.++++  .+++++.|+.|++||+++++.    +..  .+..++.+++|+|++++|++++.|+.+ +|+..
T Consensus       205 ~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          205 GGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             SSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             CceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            777888888764  599999999999999998765    332  355689999999999998888766655 77654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=8.9e-35  Score=276.37  Aligned_cols=263  Identities=22%  Similarity=0.369  Sum_probs=208.3

Q ss_pred             ccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcC--CCCEEEEEeCCCcEEEE
Q 023772           10 EANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTA--DNSKLISCGGDRQIFYW   87 (277)
Q Consensus        10 ~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~s~d~~v~~w   87 (277)
                      ....+.+|.++|.+++|+|+|++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|  ++..+++|+.|+.|++|
T Consensus       649 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vw  728 (1249)
T 3sfz_A          649 KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW  728 (1249)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEE
T ss_pred             EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEE
Confidence            3456789999999999999999999999999999999999999999999999999999999  55689999999999999


Q ss_pred             ECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcc-----------------------------
Q 023772           88 DVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEP-----------------------------  138 (277)
Q Consensus        88 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-----------------------------  138 (277)
                      |+.+++++.++.+|..+|.+++|+|+++.+++++.||+|++||++......                             
T Consensus       729 d~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  808 (1249)
T 3sfz_A          729 DLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA  808 (1249)
T ss_dssp             ETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCT
T ss_pred             ECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECC
Confidence            999999999999999999999999999999999999999999986431100                             


Q ss_pred             ------------------------------------------------------------------eEeeccccCcEEEE
Q 023772          139 ------------------------------------------------------------------IQIIDSFQDSVMSV  152 (277)
Q Consensus       139 ------------------------------------------------------------------~~~~~~~~~~~~~~  152 (277)
                                                                                        ...+..|...+..+
T Consensus       809 dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v  888 (1249)
T 3sfz_A          809 DGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGV  888 (1249)
T ss_dssp             TSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             CCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEE
Confidence                                                                              00011233334445


Q ss_pred             EecC--CeEEEeecCCcEEEEEccCCccc---------------------------------------ccCCCCCeeEEE
Q 023772          153 CLTK--TEIIGGSVDGTVRTFDIRVGREL---------------------------------------SDDLGQPVNCIS  191 (277)
Q Consensus       153 ~~~~--~~~~~g~~d~~i~i~d~~~~~~~---------------------------------------~~~~~~~v~~~~  191 (277)
                      .+++  ..+++++.|+.+++||+......                                       .......+.+++
T Consensus       889 ~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  968 (1249)
T 3sfz_A          889 MFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCC  968 (1249)
T ss_dssp             EECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEE
T ss_pred             EECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEE
Confidence            5543  34677777777777775431100                                       001134577788


Q ss_pred             EeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCcc
Q 023772          192 MSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSL  271 (277)
Q Consensus       192 ~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~  271 (277)
                      |+|+++++++|+.||.|++||+.+++....+.+|...  +..++++|+++++++|+.||.|++||+.+++... +.+|..
T Consensus       969 ~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~--v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~ 1045 (1249)
T 3sfz_A          969 LSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKA--VRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQE 1045 (1249)
T ss_dssp             ECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSC--CCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSS
T ss_pred             EcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCc--eEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCC
Confidence            8888888888888888888888888888888777543  4556789999999999999999999999987764 457766


Q ss_pred             eeEe
Q 023772          272 VVKL  275 (277)
Q Consensus       272 ~v~~  275 (277)
                      .|..
T Consensus      1046 ~v~~ 1049 (1249)
T 3sfz_A         1046 TVKD 1049 (1249)
T ss_dssp             CEEE
T ss_pred             cEEE
Confidence            6554

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.7e-34  Score=236.41  Aligned_cols=217  Identities=21%  Similarity=0.349  Sum_probs=185.6

Q ss_pred             eeEEEEeccCccEEEEEEcCCC-CEEEEEeCCCcEEEEECCC-----CceeEEeecccCceeEEEEecCCCEEEEEeCCC
Q 023772           51 IHIKTYKSHGREVRDVHVTADN-SKLISCGGDRQIFYWDVST-----GRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQ  124 (277)
Q Consensus        51 ~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~d~~v~~wd~~~-----~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~  124 (277)
                      ....++++|.++|++++|+|++ ++|+||+.|++|++||+..     +.++..+.+|...|.+++|+|+++++++|+.|+
T Consensus         8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~   87 (319)
T 3frx_A            8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK   87 (319)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCC
Confidence            4556889999999999999965 7999999999999999864     345778999999999999999999999999999


Q ss_pred             cEEEEeCccCCCcceEeeccccCcEEEEEecCC--eEEEeecCCcEEEEEccCCccc-ccCCCCCeeEEEEeCC------
Q 023772          125 SLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--EIIGGSVDGTVRTFDIRVGREL-SDDLGQPVNCISMSND------  195 (277)
Q Consensus       125 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~i~d~~~~~~~-~~~~~~~v~~~~~s~~------  195 (277)
                      +|++||+.+.  +....+..|...+.++.+++.  .+++|+.|++|++||++..... ...+...+.++.|+|.      
T Consensus        88 ~v~~wd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  165 (319)
T 3frx_A           88 TLRLWDVATG--ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDD  165 (319)
T ss_dssp             EEEEEETTTT--EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------
T ss_pred             EEEEEECCCC--CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCC
Confidence            9999999764  345567778888998888764  5999999999999999754321 1235568999999985      


Q ss_pred             CCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCcc
Q 023772          196 GNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSL  271 (277)
Q Consensus       196 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~  271 (277)
                      +..+++++.|+.|++||+++++....+.+|...  ...++++|++.+|++|+.||.|++||+.+++.+..+..|..
T Consensus       166 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~--v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  239 (319)
T 3frx_A          166 SVTIISAGNDKMVKAWNLNQFQIEADFIGHNSN--INTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE  239 (319)
T ss_dssp             CCEEEEEETTSCEEEEETTTTEEEEEECCCCSC--EEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSC
T ss_pred             ccEEEEEeCCCEEEEEECCcchhheeecCCCCc--EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCc
Confidence            458999999999999999999999899888644  45667899999999999999999999999999999987754

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.1e-34  Score=235.18  Aligned_cols=205  Identities=18%  Similarity=0.302  Sum_probs=172.7

Q ss_pred             EEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC--CceeEEeecccCceeEEEEec--CCCEEEEEeCCCcEEEE
Q 023772           54 KTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVST--GRVIRKFRGHESEVNAVKFNE--YSSVVVSAGYDQSLRAW  129 (277)
Q Consensus        54 ~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~--~~~~~~~~~h~~~v~~i~~~~--~~~~l~s~~~d~~i~iw  129 (277)
                      ..+.+|...|++++|+|++++|++|+.|++|++||+++  .+++.++.+|..+|++++|++  ++++|++|+.|++|++|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            45678999999999999999999999999999999975  467889999999999999975  38899999999999999


Q ss_pred             eCccCCCcceEeeccccCcEEEEEecCC----eEEEeecCCcEEEEEccCCcc----cccCCCCCeeEEEEeCC------
Q 023772          130 DCRSHSTEPIQIIDSFQDSVMSVCLTKT----EIIGGSVDGTVRTFDIRVGRE----LSDDLGQPVNCISMSND------  195 (277)
Q Consensus       130 d~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~~d~~i~i~d~~~~~~----~~~~~~~~v~~~~~s~~------  195 (277)
                      |++.........+..|...+.++.+.+.    .+++++.|++|++||++....    ....+...|++++|+|+      
T Consensus        83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~  162 (297)
T 2pm7_B           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (297)
T ss_dssp             EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred             EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence            9986544455556677888999988763    599999999999999986532    12345668999999997      


Q ss_pred             -------CCEEEEEecCCeEEEEECCCCc----eEEEEeccccceeeeeeEecCCC---ceEEeecCCCeEEEEECcCc
Q 023772          196 -------GNCILASCLDSTLRLLDRSTGE----LLQEYKGHICKSFKTDCCLTNSD---AHVTGGSEDGYIYFWDLVDA  260 (277)
Q Consensus       196 -------~~~l~~~~~d~~i~~wd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~---~~l~sgs~d~~i~iwd~~~~  260 (277)
                             +++|++|+.|++|++||+++++    +...+.+|..  .+..++++|++   .++++|+.|++|++||+++.
T Consensus       163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~--~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~  239 (297)
T 2pm7_B          163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD--WVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE  239 (297)
T ss_dssp             -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS--CEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCC--ceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence                   5789999999999999998765    5667888854  34667789984   89999999999999999874

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.4e-35  Score=249.05  Aligned_cols=238  Identities=12%  Similarity=0.146  Sum_probs=190.3

Q ss_pred             ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCC---CCeeEEEEec------------cCccEEEEE--EcCCCCEEEEE
Q 023772           16 GHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPH---RGIHIKTYKS------------HGREVRDVH--VTADNSKLISC   78 (277)
Q Consensus        16 ~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~---~~~~~~~~~~------------h~~~v~~~~--~~~~~~~l~t~   78 (277)
                      +|.++|.+++|+|++++|++|+.|++|++||+.   +++....+..            +...+.++.  +++++.+|+++
T Consensus       109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  188 (437)
T 3gre_A          109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL  188 (437)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE
T ss_pred             cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE
Confidence            699999999999999999999999999999984   5555544433            344555665  55788999999


Q ss_pred             eCCCcEEEEECCCCceeEEeec--ccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeec-cccCcEEEEEec
Q 023772           79 GGDRQIFYWDVSTGRVIRKFRG--HESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIID-SFQDSVMSVCLT  155 (277)
Q Consensus        79 s~d~~v~~wd~~~~~~~~~~~~--h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~  155 (277)
                      +.|+.|++||+.+++++..+..  |...|.+++|+|+++++++|+.||+|++||++...  ....+. .+...+..+.+.
T Consensus       189 ~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~  266 (437)
T 3gre_A          189 TNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNV--LIRSWSFGDHAPITHVEVC  266 (437)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTE--EEEEEBCTTCEEEEEEEEC
T ss_pred             eCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCcc--EEEEEecCCCCceEEEEec
Confidence            9999999999999999999988  89999999999999999999999999999998643  333332 455677888554


Q ss_pred             CC------eEEEeecCCcEEEEEccCCccccc----------------------------CCCCCeeEEEEeCCCCEEEE
Q 023772          156 KT------EIIGGSVDGTVRTFDIRVGRELSD----------------------------DLGQPVNCISMSNDGNCILA  201 (277)
Q Consensus       156 ~~------~~~~g~~d~~i~i~d~~~~~~~~~----------------------------~~~~~v~~~~~s~~~~~l~~  201 (277)
                      +.      .+++|+.|+.|++||+++++.+..                            .+...|++++|+ ++++|++
T Consensus       267 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s  345 (437)
T 3gre_A          267 QFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLT  345 (437)
T ss_dssp             TTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEE
T ss_pred             cccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEe
Confidence            32      589999999999999987653211                            023458999999 7789999


Q ss_pred             EecCCeEEEEECCCCceEEEEeccc-----------------------------------cceeeeeeEecCC--CceEE
Q 023772          202 SCLDSTLRLLDRSTGELLQEYKGHI-----------------------------------CKSFKTDCCLTNS--DAHVT  244 (277)
Q Consensus       202 ~~~d~~i~~wd~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~--~~~l~  244 (277)
                      |+.|+.|++||+.+++....+.+|.                                   ....+..+++.++  +.+|+
T Consensus       346 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~  425 (437)
T 3gre_A          346 DEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLV  425 (437)
T ss_dssp             EGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEE
T ss_pred             cCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEE
Confidence            9999999999999998877777631                                   1222344455555  78999


Q ss_pred             eecCCCeEEEEE
Q 023772          245 GGSEDGYIYFWD  256 (277)
Q Consensus       245 sgs~d~~i~iwd  256 (277)
                      +|+.||.|++|+
T Consensus       426 s~~~dG~I~iw~  437 (437)
T 3gre_A          426 ACDNSGLIGIFQ  437 (437)
T ss_dssp             EEETTSCEEEEC
T ss_pred             EEcCCceEEEeC
Confidence            999999999995

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=7.1e-34  Score=236.17  Aligned_cols=238  Identities=12%  Similarity=0.185  Sum_probs=182.0

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEE-EEEeCCCcEEEEEC
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKL-ISCGGDRQIFYWDV   89 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~t~s~d~~v~~wd~   89 (277)
                      ...+.+|.++|++++|+|||++|++|+.|+ +++||..+++.......  ..+..+++.++++.+ ++++.|++|++||+
T Consensus        12 ~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~   88 (355)
T 3vu4_A           12 IVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWDD   88 (355)
T ss_dssp             -------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEET
T ss_pred             ccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEEC
Confidence            335688999999999999999999988775 79999988766554432  357888898888877 56788899999999


Q ss_pred             CCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEE--eecCCc
Q 023772           90 STGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIG--GSVDGT  167 (277)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~d~~  167 (277)
                      .+++++.++. |..+|.++.++++.  ++.+ .|+.|++||+.... ..+..+..   ....+.+.+..++.  |+.||.
T Consensus        89 ~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~-~~~~~~~~---~~~~~~~s~~~la~~sg~~~g~  160 (355)
T 3vu4_A           89 VKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPW-KRITDDIR---FGGVCEFSNGLLVYSNEFNLGQ  160 (355)
T ss_dssp             TTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTC-CBSSCCEE---EEEEEEEETTEEEEEESSCTTC
T ss_pred             CCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCc-eeeEEecc---CCceEEEEccEEEEeCCCcCcE
Confidence            9999998887 67799999998763  3333 48899999997651 11222222   22233344466655  688999


Q ss_pred             EEEEEccCCc------------------ccccCCCCCeeEEEEeCCCCEEEEEecCCe-EEEEECCCCceEEEEe-c-cc
Q 023772          168 VRTFDIRVGR------------------ELSDDLGQPVNCISMSNDGNCILASCLDST-LRLLDRSTGELLQEYK-G-HI  226 (277)
Q Consensus       168 i~i~d~~~~~------------------~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-i~~wd~~~~~~~~~~~-~-~~  226 (277)
                      |++||++.+.                  .....+..+|++++|+|+|++|++|+.|++ |++||+++++++..+. + |.
T Consensus       161 v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~  240 (355)
T 3vu4_A          161 IHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDR  240 (355)
T ss_dssp             EEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCC
T ss_pred             EEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCC
Confidence            9999998754                  122345678999999999999999999998 9999999999999998 5 64


Q ss_pred             cceeeeeeEecCCCceEEeecCCCeEEEEECcCcc
Q 023772          227 CKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDAS  261 (277)
Q Consensus       227 ~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~  261 (277)
                      .  ....++++|++.+|++|+.|+.|++||++++.
T Consensus       241 ~--~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          241 A--DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             S--CEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred             C--cEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence            3  45667899999999999999999999998764

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.1e-34  Score=244.84  Aligned_cols=251  Identities=16%  Similarity=0.197  Sum_probs=200.1

Q ss_pred             cEEEEEEeCCCCEE-EEEeCCCcEEEEcCCCCe----eEEEEeccCccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-
Q 023772           20 AVLAARFNGDGNYC-LSCGKDRTIRLWNPHRGI----HIKTYKSHGREVRDVHVTA-DNSKLISCGGDRQIFYWDVSTG-   92 (277)
Q Consensus        20 ~V~~~~~~~~~~~l-~s~s~d~~v~iwd~~~~~----~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~d~~v~~wd~~~~-   92 (277)
                      ....++++|+...+ ++++.||.|+||++.+..    ....+.+|..+|++++|+| ++++|++|+.|++|++||+.++ 
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~  115 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG  115 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence            34568888876544 468999999999986542    3456788999999999999 8999999999999999999987 


Q ss_pred             ------ceeEEeecccCceeEEEEecCC-CEEEEEeCCCcEEEEeCccCCCcceEee--ccccCcEEEEEecC--CeEEE
Q 023772           93 ------RVIRKFRGHESEVNAVKFNEYS-SVVVSAGYDQSLRAWDCRSHSTEPIQII--DSFQDSVMSVCLTK--TEIIG  161 (277)
Q Consensus        93 ------~~~~~~~~h~~~v~~i~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~  161 (277)
                            +++..+.+|...|.+++|+|++ +++++++.|++|++||++...  ....+  ..+...+.++.+++  ..+++
T Consensus       116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~  193 (402)
T 2aq5_A          116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA--AVLTLGPDVHPDTIYSVDWSRDGALICT  193 (402)
T ss_dssp             CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE--EEEEECTTTCCSCEEEEEECTTSSCEEE
T ss_pred             CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC--ccEEEecCCCCCceEEEEECCCCCEEEE
Confidence                  6688899999999999999998 699999999999999998643  34445  56788888888865  45999


Q ss_pred             eecCCcEEEEEccCCccccc---CCC-CCeeEEEEeCCCCEEEEE---ecCCeEEEEECCCCce-EEEEe-ccccceeee
Q 023772          162 GSVDGTVRTFDIRVGRELSD---DLG-QPVNCISMSNDGNCILAS---CLDSTLRLLDRSTGEL-LQEYK-GHICKSFKT  232 (277)
Q Consensus       162 g~~d~~i~i~d~~~~~~~~~---~~~-~~v~~~~~s~~~~~l~~~---~~d~~i~~wd~~~~~~-~~~~~-~~~~~~~~~  232 (277)
                      ++.|+.|++||+++++.+..   .+. ..+.++.|+|++.+|++|   +.|+.|++||+++++. +.... .+.  ....
T Consensus       194 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~v~  271 (402)
T 2aq5_A          194 SCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTS--SGVL  271 (402)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCC--SSCE
T ss_pred             EecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCC--Ccee
Confidence            99999999999998765433   232 348999999999999998   7999999999988654 33332 222  2345


Q ss_pred             eeEecCCCceEE-eecCCCeEEEEECcCccc-eeeeccC--cceeE
Q 023772          233 DCCLTNSDAHVT-GGSEDGYIYFWDLVDASV-VAKFKAH--SLVVK  274 (277)
Q Consensus       233 ~~~~~~~~~~l~-sgs~d~~i~iwd~~~~~~-~~~~~~h--~~~v~  274 (277)
                      .++++|++.+++ +|+.||.|++||+.+++. +..+..|  ...|.
T Consensus       272 ~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~  317 (402)
T 2aq5_A          272 LPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQR  317 (402)
T ss_dssp             EEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCS
T ss_pred             EEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCccc
Confidence            668899999886 677899999999999884 5555544  34443

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=4.2e-34  Score=235.46  Aligned_cols=237  Identities=11%  Similarity=0.024  Sum_probs=197.8

Q ss_pred             cceeeccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEcC-CCCeeEEEEec--cCccEEEEEEcCCCCEEEEEeCCCcEEE
Q 023772           11 ANVLKGHEGAVLAARFNGDGN-YCLSCGKDRTIRLWNP-HRGIHIKTYKS--HGREVRDVHVTADNSKLISCGGDRQIFY   86 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~-~l~s~s~d~~v~iwd~-~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~t~s~d~~v~~   86 (277)
                      ...+.+|.++|.+++|+|+++ +|++|+.|+.|++||+ .+++. ..+..  |...|.+++|+| +++|++++.|+.|++
T Consensus        49 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~i  126 (342)
T 1yfq_A           49 LLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEV  126 (342)
T ss_dssp             EEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEE
T ss_pred             ceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEE
Confidence            455679999999999999999 9999999999999999 77654 77888  999999999999 999999999999999


Q ss_pred             EECCC---------CceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCcc-CCCcceEeeccccCcEEEEEecC
Q 023772           87 WDVST---------GRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRS-HSTEPIQIIDSFQDSVMSVCLTK  156 (277)
Q Consensus        87 wd~~~---------~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~  156 (277)
                      ||+.+         ++++..+. |...|.++++++++  +++++.|+.|++||++. ...........+...+..+.+.+
T Consensus       127 wd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~  203 (342)
T 1yfq_A          127 IDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLP  203 (342)
T ss_dssp             ECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECS
T ss_pred             EcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECC
Confidence            99987         77777776 89999999999886  99999999999999987 44333334445666788877765


Q ss_pred             ---CeEEEeecCCcEEEEEccCC------ccccc--CC---------CCCeeEEEEeCCCCEEEEEecCCeEEEEECCCC
Q 023772          157 ---TEIIGGSVDGTVRTFDIRVG------RELSD--DL---------GQPVNCISMSNDGNCILASCLDSTLRLLDRSTG  216 (277)
Q Consensus       157 ---~~~~~g~~d~~i~i~d~~~~------~~~~~--~~---------~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~  216 (277)
                         ..+++++.||.+++||++..      +....  .+         ..+|.+++|+|++++|++++.||.|++||+.++
T Consensus       204 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  283 (342)
T 1yfq_A          204 KEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR  283 (342)
T ss_dssp             GGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred             CCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH
Confidence               56999999999999999765      22211  22         238999999999999999999999999999999


Q ss_pred             ceEEEEecc-ccceeeeeeEecCCCceEEeecCCCe-EEEEE
Q 023772          217 ELLQEYKGH-ICKSFKTDCCLTNSDAHVTGGSEDGY-IYFWD  256 (277)
Q Consensus       217 ~~~~~~~~~-~~~~~~~~~~~~~~~~~l~sgs~d~~-i~iwd  256 (277)
                      +++..+.+| ....  ..++  +++.+|++|+.||. .+.|.
T Consensus       284 ~~~~~~~~~h~~~v--~~~~--~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          284 KKIKNFAKFNEDSV--VKIA--CSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             EEEEECCCCSSSEE--EEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred             hHhhhhhcccCCCc--eEec--CCCCeEEEEecCCccccccc
Confidence            999998887 5433  3333  89999999999998 44444

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.8e-33  Score=256.81  Aligned_cols=254  Identities=19%  Similarity=0.247  Sum_probs=212.4

Q ss_pred             ccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 023772           10 EANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDV   89 (277)
Q Consensus        10 ~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~   89 (277)
                      ....+.+|.++|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|...|++++|+|++++|++++.|+.|++||+
T Consensus        47 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~  126 (814)
T 3mkq_A           47 EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW  126 (814)
T ss_dssp             EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEG
T ss_pred             eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEEC
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC-ceeEEeecccCceeEEEEec-CCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEe----cCCeEEEee
Q 023772           90 STG-RVIRKFRGHESEVNAVKFNE-YSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCL----TKTEIIGGS  163 (277)
Q Consensus        90 ~~~-~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~g~  163 (277)
                      +++ .....+.+|..+|.+++|+| +++.+++++.||+|++||+....... .....+...+..+.+    ++..+++++
T Consensus       127 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~  205 (814)
T 3mkq_A          127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF-TLTTGQERGVNYVDYYPLPDKPYMITAS  205 (814)
T ss_dssp             GGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSE-EEECCCTTCCCEEEECCSTTCCEEEEEC
T ss_pred             CCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccee-EEecCCCCCEEEEEEEECCCCCEEEEEe
Confidence            987 67788899999999999999 78899999999999999997654322 222223355555555    445699999


Q ss_pred             cCCcEEEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCc
Q 023772          164 VDGTVRTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDA  241 (277)
Q Consensus       164 ~d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (277)
                      .||.|++||++.++.+..  .+..++.+++|+|++++|++++.||.|++||..+++.+..+..+...  ...++++|++.
T Consensus       206 ~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~  283 (814)
T 3mkq_A          206 DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLER--SWCIATHPTGR  283 (814)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSS--EEEEEECTTCG
T ss_pred             CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCc--EEEEEEccCCC
Confidence            999999999988765443  35568999999999999999999999999999999999988877543  45567788876


Q ss_pred             --eEEeecCCCeEEEEECcCccceeeec
Q 023772          242 --HVTGGSEDGYIYFWDLVDASVVAKFK  267 (277)
Q Consensus       242 --~l~sgs~d~~i~iwd~~~~~~~~~~~  267 (277)
                        ++++|+ |+.+.+|++........+.
T Consensus       284 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~  310 (814)
T 3mkq_A          284 KNYIASGF-DNGFTVLSLGNDEPTLSLD  310 (814)
T ss_dssp             GGEEEEEE-TTEEEEEECSCCSCCEEEC
T ss_pred             ceEEEEEe-CCCEEEEEcCCCCceeEEC
Confidence              355554 6678899987765544443

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.7e-33  Score=240.14  Aligned_cols=244  Identities=14%  Similarity=0.252  Sum_probs=189.8

Q ss_pred             cceeeccC------------CcEEEEEEeCCC--CEEEEEeCCCcEEEEcCCCCeeE-----------------------
Q 023772           11 ANVLKGHE------------GAVLAARFNGDG--NYCLSCGKDRTIRLWNPHRGIHI-----------------------   53 (277)
Q Consensus        11 ~~~l~~H~------------~~V~~~~~~~~~--~~l~s~s~d~~v~iwd~~~~~~~-----------------------   53 (277)
                      ...+.+|.            ++|.+++|+|++  .+|++++.|++|++||+.++...                       
T Consensus        74 ~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  153 (447)
T 3dw8_B           74 YSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLR  153 (447)
T ss_dssp             EEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCC
T ss_pred             ecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceE
Confidence            45678998            889999999998  79999999999999998764331                       


Q ss_pred             ----------------EE-EeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeE-------EeecccCceeEE
Q 023772           54 ----------------KT-YKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVST-GRVIR-------KFRGHESEVNAV  108 (277)
Q Consensus        54 ----------------~~-~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~-~~~~~-------~~~~h~~~v~~i  108 (277)
                                      +. ..+|...|.+++|+|++++|++| .|++|++||+++ ++.+.       .+.+|...|.++
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  232 (447)
T 3dw8_B          154 VPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAA  232 (447)
T ss_dssp             CCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEE
T ss_pred             eccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEE
Confidence                            12 36799999999999999999998 799999999984 44444       356899999999


Q ss_pred             EEecCC-CEEEEEeCCCcEEEEeCccCCCc--ceEeeccccC------------cEEEEEecCC--eEEEeecCCcEEEE
Q 023772          109 KFNEYS-SVVVSAGYDQSLRAWDCRSHSTE--PIQIIDSFQD------------SVMSVCLTKT--EIIGGSVDGTVRTF  171 (277)
Q Consensus       109 ~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~~------------~~~~~~~~~~--~~~~g~~d~~i~i~  171 (277)
                      +|+|++ +++++|+.||+|++||++.....  ....+..+..            .+..+.++++  .+++++. +.|++|
T Consensus       233 ~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iw  311 (447)
T 3dw8_B          233 EFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVW  311 (447)
T ss_dssp             EECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEE
T ss_pred             EECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEE
Confidence            999998 99999999999999999875431  1344555544            7888888764  5888888 999999


Q ss_pred             EccC-CcccccCCCC-----------------CeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccc-------
Q 023772          172 DIRV-GRELSDDLGQ-----------------PVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHI-------  226 (277)
Q Consensus       172 d~~~-~~~~~~~~~~-----------------~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-------  226 (277)
                      |++. ++.+.....+                 .+..++|+|++++|++|+.||.|++||+.+++.+. +.++.       
T Consensus       312 d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~  390 (447)
T 3dw8_B          312 DLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRT  390 (447)
T ss_dssp             ETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTC
T ss_pred             eCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeeccccccccc
Confidence            9987 5443322111                 13348999999999999999999999999887763 22221       


Q ss_pred             ------------------------cceeeeeeEecCCCceEEeecCCCeEEEEECc
Q 023772          227 ------------------------CKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLV  258 (277)
Q Consensus       227 ------------------------~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~  258 (277)
                                              .......++++|++.+||+|+.++ +++|.-+
T Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          391 VLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             BCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred             ccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence                                    011235578999999999998876 8888653

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.7e-34  Score=234.97  Aligned_cols=219  Identities=22%  Similarity=0.342  Sum_probs=172.8

Q ss_pred             EEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eeEEeecccCceeEEEEec--CCCEEEEEeCCCcEEEEe
Q 023772           55 TYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGR--VIRKFRGHESEVNAVKFNE--YSSVVVSAGYDQSLRAWD  130 (277)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~--~~~~~~~h~~~v~~i~~~~--~~~~l~s~~~d~~i~iwd  130 (277)
                      .+.+|.++|++++|+|++++|++|+.|++|++||+++++  ++.++.+|..+|++++|++  ++++|++|+.|++|++||
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            456899999999999999999999999999999998764  5678999999999999975  489999999999999999


Q ss_pred             CccCCCcceEeeccccCcEEEEEecCC----eEEEeecCCcEEEEEccCCcc-----cccCCCCCeeEEEEeCC------
Q 023772          131 CRSHSTEPIQIIDSFQDSVMSVCLTKT----EIIGGSVDGTVRTFDIRVGRE-----LSDDLGQPVNCISMSND------  195 (277)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~~d~~i~i~d~~~~~~-----~~~~~~~~v~~~~~s~~------  195 (277)
                      ++.........+..|...+.++.+++.    .+++|+.|++|++||++....     ....+...+.+++|+|+      
T Consensus        88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  167 (316)
T 3bg1_A           88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL  167 (316)
T ss_dssp             CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred             CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence            986544455556678888888888764    599999999999999986532     12234567899999997      


Q ss_pred             -----------CCEEEEEecCCeEEEEECCCC---ceEEEEeccccceeeeeeEecCCC----ceEEeecCCCeEEEEEC
Q 023772          196 -----------GNCILASCLDSTLRLLDRSTG---ELLQEYKGHICKSFKTDCCLTNSD----AHVTGGSEDGYIYFWDL  257 (277)
Q Consensus       196 -----------~~~l~~~~~d~~i~~wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~----~~l~sgs~d~~i~iwd~  257 (277)
                                 +++|++|+.|+.|++||++..   +++..+.+|..  .+..++++|++    .+|++|+.|+.|++||+
T Consensus       168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~--~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~  245 (316)
T 3bg1_A          168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSD--WVRDVAWAPSIGLPTSTIASCSQDGRVFIWTC  245 (316)
T ss_dssp             ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSS--CEEEEECCCCSSCSCCEEEEEETTCEEEEEEC
T ss_pred             cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCC--ceEEEEecCCCCCCCceEEEEcCCCeEEEEEc
Confidence                       468999999999999999754   45667778854  34567788876    78999999999999999


Q ss_pred             cCc---c-ceeeeccCcceeEe
Q 023772          258 VDA---S-VVAKFKAHSLVVKL  275 (277)
Q Consensus       258 ~~~---~-~~~~~~~h~~~v~~  275 (277)
                      .+.   . ....+.+|...|..
T Consensus       246 ~~~~~~~~~~~~~~~~~~~v~~  267 (316)
T 3bg1_A          246 DDASSNTWSPKLLHKFNDVVWH  267 (316)
T ss_dssp             SSTTCCCCBCCEEEECSSCEEE
T ss_pred             cCccccchhhhhhhcCCCcEEE
Confidence            873   1 22445567665543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-34  Score=238.08  Aligned_cols=229  Identities=13%  Similarity=0.118  Sum_probs=179.4

Q ss_pred             EEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC---------CCcee
Q 023772           25 RFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS---------TGRVI   95 (277)
Q Consensus        25 ~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~---------~~~~~   95 (277)
                      .+.+++.++++|+.||+|++||+.+++.+..+.  ...|.++.++|.   +++++.|++|++|+..         +++.+
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~  117 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL  117 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence            344678899999999999999999998888876  467888888887   9999999999999765         45545


Q ss_pred             EEee-cccCceeEEEEec--CCCEEEEEeCCCcEEEEeCccCCCcceEee-ccccCcEEEEEecC--CeEEEeecCCcEE
Q 023772           96 RKFR-GHESEVNAVKFNE--YSSVVVSAGYDQSLRAWDCRSHSTEPIQII-DSFQDSVMSVCLTK--TEIIGGSVDGTVR  169 (277)
Q Consensus        96 ~~~~-~h~~~v~~i~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~g~~d~~i~  169 (277)
                      ..+. .|..+|.+++++|  +++++++++.||+|++||++....  .... ..+...+.++.+++  ..+++|+.||.|+
T Consensus       118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~  195 (343)
T 3lrv_A          118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ--YIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILD  195 (343)
T ss_dssp             EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE--EEEECCCSSCCCCEEEECTTSCEEEEECTTSCEE
T ss_pred             EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE--EEEEecCCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence            4444 6778999999999  999999999999999999986543  3322 23344566666655  4588999999999


Q ss_pred             EEEccCCccc---ccC-CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEec---cccceeeeeeEecCCCce
Q 023772          170 TFDIRVGREL---SDD-LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKG---HICKSFKTDCCLTNSDAH  242 (277)
Q Consensus       170 i~d~~~~~~~---~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  242 (277)
                      +||+++++..   ... +..+|++++|+|++.+|++++ |+.|++||+++++.+..+..   |........++++|++.+
T Consensus       196 iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  274 (343)
T 3lrv_A          196 VYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKN  274 (343)
T ss_dssp             EEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSE
T ss_pred             EEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCE
Confidence            9999988755   223 567999999999999999999 55999999998877655443   221111134789999999


Q ss_pred             EEeecC-CCeEEEEECcCcc
Q 023772          243 VTGGSE-DGYIYFWDLVDAS  261 (277)
Q Consensus       243 l~sgs~-d~~i~iwd~~~~~  261 (277)
                      +++++. |+.|++|++.+..
T Consensus       275 l~~~s~~d~~i~v~~~~~~~  294 (343)
T 3lrv_A          275 MIAYSNESNSLTIYKFDKKT  294 (343)
T ss_dssp             EEEEETTTTEEEEEEECTTT
T ss_pred             EEEecCCCCcEEEEEEcccc
Confidence            999888 9999999986653

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.1e-33  Score=255.80  Aligned_cols=241  Identities=8%  Similarity=0.064  Sum_probs=193.8

Q ss_pred             eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 023772           13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTG   92 (277)
Q Consensus        13 ~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~   92 (277)
                      ...||.+.|.+++|+|++++||+|+.||+|+||+..+++....+ .|..+|.+++|+| +++|++++.|++|++||++++
T Consensus        12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~   89 (902)
T 2oaj_A           12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ   89 (902)
T ss_dssp             EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC
T ss_pred             cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC
Confidence            34689999999999999999999999999999999887766554 4788999999999 889999999999999999999


Q ss_pred             ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcce---------EeeccccCcEEEEEecCC---eEE
Q 023772           93 RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPI---------QIIDSFQDSVMSVCLTKT---EII  160 (277)
Q Consensus        93 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~---------~~~~~~~~~~~~~~~~~~---~~~  160 (277)
                      +++.++. |...|++++|+|+++++++|+.||+|++||++.......         .....|...+.++.+++.   .++
T Consensus        90 ~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~  168 (902)
T 2oaj_A           90 KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL  168 (902)
T ss_dssp             SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEE
T ss_pred             cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEE
Confidence            9988886 778999999999999999999999999999976532111         112446678888998874   488


Q ss_pred             EeecCCcEEEEEccCCcccccC--------------------CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEE
Q 023772          161 GGSVDGTVRTFDIRVGRELSDD--------------------LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQ  220 (277)
Q Consensus       161 ~g~~d~~i~i~d~~~~~~~~~~--------------------~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~  220 (277)
                      +|+.|+.+ +||++.++.+...                    +...|++++|+|+|++|++++.|+.|++||+++++++.
T Consensus       169 ~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~  247 (902)
T 2oaj_A          169 ISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIM  247 (902)
T ss_dssp             EECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred             EEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE
Confidence            99999999 9999887643221                    12569999999999999999999999999999988875


Q ss_pred             E--Ee---ccc-----------cceeeeeeEec----CCC-ceEEeecCC-----CeEEEEEC
Q 023772          221 E--YK---GHI-----------CKSFKTDCCLT----NSD-AHVTGGSED-----GYIYFWDL  257 (277)
Q Consensus       221 ~--~~---~~~-----------~~~~~~~~~~~----~~~-~~l~sgs~d-----~~i~iwd~  257 (277)
                      .  +.   .|.           ....+..++++    |++ .++++|+.|     +.+++|++
T Consensus       248 ~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~  310 (902)
T 2oaj_A          248 ARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL  310 (902)
T ss_dssp             EECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred             EEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence            4  21   121           11123444553    443 567888665     37889984

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.7e-33  Score=233.54  Aligned_cols=242  Identities=16%  Similarity=0.236  Sum_probs=194.4

Q ss_pred             ceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEE--cCCCCEEEEEeCCCcEEEEEC
Q 023772           12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHV--TADNSKLISCGGDRQIFYWDV   89 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~~~l~t~s~d~~v~~wd~   89 (277)
                      ..+.+|.++|.+++|+|++++|++++.|+.|++||+.+++... +..|..+|.+++|  ++++.+|++++.|+.|++||+
T Consensus        80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~  158 (368)
T 3mmy_A           80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT  158 (368)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECS
T ss_pred             EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEEC
Confidence            5678999999999999999999999999999999999988665 5669999999999  899999999999999999999


Q ss_pred             CCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeec--cccCcEEEEEecCCe----EEEee
Q 023772           90 STGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIID--SFQDSVMSVCLTKTE----IIGGS  163 (277)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~g~  163 (277)
                      .+++++..+..|. .+.++.+.  ...++.++.|+.+++|+++...........  .+...+..+......    +++++
T Consensus       159 ~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (368)
T 3mmy_A          159 RSSNPMMVLQLPE-RCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS  235 (368)
T ss_dssp             SCSSCSEEEECSS-CEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE
T ss_pred             CCCcEEEEEecCC-CceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEec
Confidence            9999998888765 55556655  458888999999999999764322111111  122334444444433    99999


Q ss_pred             cCCcEEEEEccCCcc---ccc--CCC------------CCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccc
Q 023772          164 VDGTVRTFDIRVGRE---LSD--DLG------------QPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHI  226 (277)
Q Consensus       164 ~d~~i~i~d~~~~~~---~~~--~~~------------~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~  226 (277)
                      .|+.|++||++....   ...  .+.            .+|++++|+|++++|++++.||.|++||+.+++++..+.+|.
T Consensus       236 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  315 (368)
T 3mmy_A          236 IEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLD  315 (368)
T ss_dssp             TTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS
T ss_pred             CCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCC
Confidence            999999999987632   111  111            169999999999999999999999999999999999998875


Q ss_pred             cceeeeeeEecCCCceEEeecCCCeEEEEECcC
Q 023772          227 CKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVD  259 (277)
Q Consensus       227 ~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~  259 (277)
                      .  ....++++|++.+|++|+.|+..+.|++.+
T Consensus       316 ~--~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~  346 (368)
T 3mmy_A          316 Q--PISACCFNHNGNIFAYASSYDWSKGHEFYN  346 (368)
T ss_dssp             S--CEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred             C--CceEEEECCCCCeEEEEecccccccccccC
Confidence            4  456678999999999999998766665544

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.5e-34  Score=260.63  Aligned_cols=253  Identities=13%  Similarity=0.098  Sum_probs=196.5

Q ss_pred             eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeE--EEE----e-----ccCccEEEEEEcCCCCEEEEEeCC
Q 023772           13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHI--KTY----K-----SHGREVRDVHVTADNSKLISCGGD   81 (277)
Q Consensus        13 ~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~--~~~----~-----~h~~~v~~~~~~~~~~~l~t~s~d   81 (277)
                      .+.||...+..++|+|++++|+||+.|++||+||+.++...  ..+    .     +|...|++++|+|++++|++|+.|
T Consensus       430 ~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~D  509 (902)
T 2oaj_A          430 LLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIET  509 (902)
T ss_dssp             SCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETT
T ss_pred             cccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecC
Confidence            46788888888888999999999999999999998876421  111    1     788999999999999999999999


Q ss_pred             CcEEEEECCCC---------------------------------------------ceeEEeecccCceeEEEEecCCCE
Q 023772           82 RQIFYWDVSTG---------------------------------------------RVIRKFRGHESEVNAVKFNEYSSV  116 (277)
Q Consensus        82 ~~v~~wd~~~~---------------------------------------------~~~~~~~~h~~~v~~i~~~~~~~~  116 (277)
                      ++|++||+.++                                             +++..+.+|..+|++++|+|++ +
T Consensus       510 gtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~  588 (902)
T 2oaj_A          510 GDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-F  588 (902)
T ss_dssp             SCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-E
T ss_pred             cEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-E
Confidence            99999999766                                             2467788899999999999999 9


Q ss_pred             EEEEeCCCcEEEEeCccCCCcce---Eeec-cccCcEEEEEec-----CC-----eEEEeecCCcEEEEEc---cCCccc
Q 023772          117 VVSAGYDQSLRAWDCRSHSTEPI---QIID-SFQDSVMSVCLT-----KT-----EIIGGSVDGTVRTFDI---RVGREL  179 (277)
Q Consensus       117 l~s~~~d~~i~iwd~~~~~~~~~---~~~~-~~~~~~~~~~~~-----~~-----~~~~g~~d~~i~i~d~---~~~~~~  179 (277)
                      |++|+.|++|++||++.......   ..+. .|...|.++.|+     ++     .+++|+.|++|++||+   .+++..
T Consensus       589 lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~  668 (902)
T 2oaj_A          589 VGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFD  668 (902)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEE
T ss_pred             EEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEE
Confidence            99999999999999865422110   1122 677789999998     64     5999999999999998   555432


Q ss_pred             cc-------CCCCCeeEEE-Ee----------------------CCCCEEEEEecCCeEEEEECCCCceEEEEeccccce
Q 023772          180 SD-------DLGQPVNCIS-MS----------------------NDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKS  229 (277)
Q Consensus       180 ~~-------~~~~~v~~~~-~s----------------------~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~  229 (277)
                      ..       .+..+|..++ |+                      +++.. ++++ +..||+|++.++++.+...+|.+..
T Consensus       669 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~-l~~~-~~~ir~~~~~~~k~~~k~~~~~~~~  746 (902)
T 2oaj_A          669 VQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIV-LITG-FDDIRLITLGKSKSTHKGFKYPLAA  746 (902)
T ss_dssp             EEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEE-EEEC-SSEEEEECTTCCCEEEEECSSCEEE
T ss_pred             EEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEE-EEEe-ccceEEEeCccccceeeEcccceee
Confidence            11       1235666665 65                      44543 3333 7799999999999987776664322


Q ss_pred             eeee-eE------ecCCCceEEeecCCCeEEEEECcCccceeeecc
Q 023772          230 FKTD-CC------LTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKA  268 (277)
Q Consensus       230 ~~~~-~~------~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~  268 (277)
                      ..+. ..      +++++..|++++.||.|++|++.+++++.+++.
T Consensus       747 ~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~  792 (902)
T 2oaj_A          747 TGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHI  792 (902)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             eEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhccC
Confidence            2210 12      467788999999999999999999999988875

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.3e-32  Score=233.01  Aligned_cols=240  Identities=13%  Similarity=0.149  Sum_probs=196.2

Q ss_pred             eccCCcEEEEEEeCCCCEE-EEEeCCCcEEEEcCC--CCeeEEEEe--ccCccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 023772           15 KGHEGAVLAARFNGDGNYC-LSCGKDRTIRLWNPH--RGIHIKTYK--SHGREVRDVHVTADNSKLISCGGDRQIFYWDV   89 (277)
Q Consensus        15 ~~H~~~V~~~~~~~~~~~l-~s~s~d~~v~iwd~~--~~~~~~~~~--~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~   89 (277)
                      .+|.+.|.+++|+|++++| ++++.|+.|++||+.  ++..+..+.  .|...|.+++|+|++++|++++.|+.+++|++
T Consensus        99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~  178 (450)
T 2vdu_B           99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDI  178 (450)
T ss_dssp             -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEec
Confidence            4688899999999999996 899999999999998  888888876  56789999999999999999999999999999


Q ss_pred             CCCceeE----EeecccCceeEEEEecC---CCEEEEEeCCCcEEEEeCccCCCcceEe-eccccCcEEEEEec-CCeEE
Q 023772           90 STGRVIR----KFRGHESEVNAVKFNEY---SSVVVSAGYDQSLRAWDCRSHSTEPIQI-IDSFQDSVMSVCLT-KTEII  160 (277)
Q Consensus        90 ~~~~~~~----~~~~h~~~v~~i~~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~  160 (277)
                      .+++...    .+.+|...|.+++|+|+   +++|++++.|++|++||++....  ... ...|...+..+.++ +..++
T Consensus       179 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~--~~~~~~~h~~~v~~~~~sd~~~l~  256 (450)
T 2vdu_B          179 NSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI--VDKWLFGHKHFVSSICCGKDYLLL  256 (450)
T ss_dssp             TSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTC--EEEECCCCSSCEEEEEECSTTEEE
T ss_pred             CCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCce--eeeeecCCCCceEEEEECCCCEEE
Confidence            8877554    78889999999999999   99999999999999999976532  333 44677788888775 66799


Q ss_pred             EeecCCcEEEEEccCCccccc---------------------------CCCCCeeEEEEeCCCCEEEEEe-cCCeEEEEE
Q 023772          161 GGSVDGTVRTFDIRVGRELSD---------------------------DLGQPVNCISMSNDGNCILASC-LDSTLRLLD  212 (277)
Q Consensus       161 ~g~~d~~i~i~d~~~~~~~~~---------------------------~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~wd  212 (277)
                      +++.|++|++||+++++.+..                           .....+.+++|+|++++|++++ .|+.|++||
T Consensus       257 s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~  336 (450)
T 2vdu_B          257 SAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILE  336 (450)
T ss_dssp             EEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEE
T ss_pred             EEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence            999999999999988764321                           1124688999999999999998 899999999


Q ss_pred             C--CCC---ceEEEEeccccceeeeeeEecCCCceEEeecC------CCeEEEEECcC
Q 023772          213 R--STG---ELLQEYKGHICKSFKTDCCLTNSDAHVTGGSE------DGYIYFWDLVD  259 (277)
Q Consensus       213 ~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~------d~~i~iwd~~~  259 (277)
                      +  .++   +.+..+.++   .....++++|++.+++.++.      ++.|++|.+..
T Consensus       337 ~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          337 MSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL  391 (450)
T ss_dssp             ECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred             eccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence            9  555   666777766   23466778886555555543      55688887653

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.3e-33  Score=237.11  Aligned_cols=232  Identities=10%  Similarity=0.096  Sum_probs=183.9

Q ss_pred             ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCe-----------------------------eEEEEe-ccCccEEE
Q 023772           16 GHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI-----------------------------HIKTYK-SHGREVRD   65 (277)
Q Consensus        16 ~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~-----------------------------~~~~~~-~h~~~v~~   65 (277)
                      .-...|.+++|+|||+++||+|.|++||  |...++                             ....+. .|...|.+
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~   90 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRV   90 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEE
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEE
Confidence            3457889999999999999999999995  433222                             111222 45778999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccC-----ceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCc---
Q 023772           66 VHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHES-----EVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTE---  137 (277)
Q Consensus        66 ~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~-----~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~---  137 (277)
                      ++|+|++++|++++.||.|++||.++  ++..+. |..     .|.+++|+|++++|++|+.||+|++||+......   
T Consensus        91 vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~  167 (588)
T 2j04_A           91 CKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPE  167 (588)
T ss_dssp             EEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCC
T ss_pred             EEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcccccc
Confidence            99999999999999999999999654  666677 665     4999999999999999999999999999865320   


Q ss_pred             --ceEee----ccccCcEEEEEecCCeEEEeecCCcEEEEEccCCccc------ccCCCCCeeEEEEeCCCCEEEEEecC
Q 023772          138 --PIQII----DSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGREL------SDDLGQPVNCISMSNDGNCILASCLD  205 (277)
Q Consensus       138 --~~~~~----~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~------~~~~~~~v~~~~~s~~~~~l~~~~~d  205 (277)
                        .+..+    .+|...|.+++++|+.+++++.|+++++||+..+...      ...+...|.+++|+  |+.|++++ +
T Consensus       168 ~i~l~ti~~~~~gh~~~V~sVawSPdgLaass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~  244 (588)
T 2j04_A          168 FYFESSIRLSDAGSKDWVTHIVWYEDVLVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-P  244 (588)
T ss_dssp             CEEEEEEECSCTTCCCCEEEEEEETTEEEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-S
T ss_pred             ceeeeeeecccccccccEEEEEEcCCcEEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-C
Confidence              13333    4566789999999888989999999999999876632      12345679999999  68888887 6


Q ss_pred             CeEEEEECCCCceEEEEeccccceeeeeeEe--cCCCceEEeecCCCeEEEEECc
Q 023772          206 STLRLLDRSTGELLQEYKGHICKSFKTDCCL--TNSDAHVTGGSEDGYIYFWDLV  258 (277)
Q Consensus       206 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~sgs~d~~i~iwd~~  258 (277)
                      ++|++||...++......+|...  .....+  +|++..++++++||+ ++|..+
T Consensus       245 ~tIkLWd~~~~~~~~~~~gh~~~--V~~va~~~s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          245 GYVHKIDLKNYSISSLKTGSLEN--FHIIPLNHEKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             SEEEEEETTTTEEEEEECSCCSC--CCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred             CeEEEEECCCCeEEEEEcCCCce--EEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence            99999999987774433377543  344678  999999999999999 999986

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=2.4e-33  Score=236.02  Aligned_cols=239  Identities=13%  Similarity=0.123  Sum_probs=169.0

Q ss_pred             cCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEE-----EEeccCccEEEEEEcC--------CCCEEEEEeCCCc
Q 023772           17 HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIK-----TYKSHGREVRDVHVTA--------DNSKLISCGGDRQ   83 (277)
Q Consensus        17 H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~-----~~~~h~~~v~~~~~~~--------~~~~l~t~s~d~~   83 (277)
                      |.+.+....+.+++.+|++++.|++||+||..++....     .+.+|.+.|++++|+|        ++++|+|||.|++
T Consensus        88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~t  167 (393)
T 4gq1_A           88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCT  167 (393)
T ss_dssp             ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSE
T ss_pred             cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCe
Confidence            44444444455667789999999999999998876533     3578999999999997        7889999999999


Q ss_pred             EEEEECCCCceeEEeecccCceeEEEEecCC-CEEEEEeCCCcEEEEeCccCCCcceE----------------------
Q 023772           84 IFYWDVSTGRVIRKFRGHESEVNAVKFNEYS-SVVVSAGYDQSLRAWDCRSHSTEPIQ----------------------  140 (277)
Q Consensus        84 v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~----------------------  140 (277)
                      |++||+.++.++..+..|..+|.+++|+|++ .+|++++.|++|++||++........                      
T Consensus       168 v~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  247 (393)
T 4gq1_A          168 LIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNT  247 (393)
T ss_dssp             EEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC--
T ss_pred             EEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceee
Confidence            9999999888888888899999999999987 48999999999999998764321100                      


Q ss_pred             -eeccccCcEEEEEe---cCCeEEEeecCCcEEEEEccCCcccccC--CC------------------CCeeEEEEeC--
Q 023772          141 -IIDSFQDSVMSVCL---TKTEIIGGSVDGTVRTFDIRVGRELSDD--LG------------------QPVNCISMSN--  194 (277)
Q Consensus       141 -~~~~~~~~~~~~~~---~~~~~~~g~~d~~i~i~d~~~~~~~~~~--~~------------------~~v~~~~~s~--  194 (277)
                       ....+...+..+.+   ++..+++++.|+++++||+..++.....  +.                  .......++|  
T Consensus       248 ~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (393)
T 4gq1_A          248 CHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRY  327 (393)
T ss_dssp             ----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSC
T ss_pred             eecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCC
Confidence             01123333444443   4567999999999999999765432110  00                  0111223333  


Q ss_pred             CCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECc
Q 023772          195 DGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLV  258 (277)
Q Consensus       195 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~  258 (277)
                      ++.++++|+.|+.|++||..+++++..+.+|..  .+..++|+|+|++||+++.|| +.+|.+.
T Consensus       328 ~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~--~V~svafspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          328 MDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM--PIVDFCWHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             TTEEEEEETTTTEEEEEETTCTTCCEEEEECSS--CEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred             CCEEEEEECCCCEEEEEECCCCcEEEEecCCCC--cEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence            344567788899999999999988887777754  356788999999999999776 5566553

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=9.2e-33  Score=222.80  Aligned_cols=210  Identities=14%  Similarity=0.127  Sum_probs=153.1

Q ss_pred             cCCcEEEEEEeCC----CCEEEEEeC--------------------CCcEEEEcC-CCCeeEEEEeccCccEEEEEEcC-
Q 023772           17 HEGAVLAARFNGD----GNYCLSCGK--------------------DRTIRLWNP-HRGIHIKTYKSHGREVRDVHVTA-   70 (277)
Q Consensus        17 H~~~V~~~~~~~~----~~~l~s~s~--------------------d~~v~iwd~-~~~~~~~~~~~h~~~v~~~~~~~-   70 (277)
                      |.+.|++++|+|+    +.++++++.                    |+.|++|++ .+|+.+..+..|...++.++|++ 
T Consensus       110 ~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~  189 (356)
T 2w18_A          110 EIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEV  189 (356)
T ss_dssp             SEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEE
T ss_pred             cccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeecc
Confidence            3446677777777    777776553                    899999998 44788888888999999999998 


Q ss_pred             --CCCEEEEEeCCCcEEEEECCCCceeEEeeccc---CceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccc
Q 023772           71 --DNSKLISCGGDRQIFYWDVSTGRVIRKFRGHE---SEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSF  145 (277)
Q Consensus        71 --~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~---~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  145 (277)
                        ++++|+++|.|++||+||++++++++++.+|.   ..+.+++|+|++.++++++.+..  +|+               
T Consensus       190 ~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~--~w~---------------  252 (356)
T 2w18_A          190 QGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCA--KES---------------  252 (356)
T ss_dssp             ETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------------------
T ss_pred             CCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCC--cce---------------
Confidence              77999999999999999999999999998654   36777899999998887765432  232               


Q ss_pred             cCcEEEEEecCCeEEEeecCCcEEEEEccCCccccc-----CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEE
Q 023772          146 QDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSD-----DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQ  220 (277)
Q Consensus       146 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~  220 (277)
                                   +++|+.|++|++||..+++.+..     ..++....+..+..+.++++++.|++|+|||+.++++++
T Consensus       253 -------------laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~  319 (356)
T 2w18_A          253 -------------ESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTA  319 (356)
T ss_dssp             ------------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEE
T ss_pred             -------------eeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEE
Confidence                         34567788888888877654321     112211123333347789999999999999999999999


Q ss_pred             EEeccccceeeeeeEecCCCceEEeecCCCeEEEEEC
Q 023772          221 EYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDL  257 (277)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~  257 (277)
                      ++.+|.... ...++|+|++++|++|+.|++||+||+
T Consensus       320 tL~gH~~~v-vs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          320 LLPPVSDQH-WSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EECCC--CC-CCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EecCCCCCe-EEEEEECCCCCEEEEEECCCcEEEecC
Confidence            999886433 223579999999999999999999995

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=4.1e-31  Score=221.74  Aligned_cols=252  Identities=10%  Similarity=0.119  Sum_probs=203.0

Q ss_pred             ceeeccCCcEEEEEEeCCCCEE-EEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEE-EEeCCCcEEEEEC
Q 023772           12 NVLKGHEGAVLAARFNGDGNYC-LSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLI-SCGGDRQIFYWDV   89 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~~~~~l-~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-t~s~d~~v~~wd~   89 (277)
                      ..+.+|. .+.+++|+|+|+++ ++++.|+.|++||+.+++.+..+..+. .+.+++|+|++++|+ +++.|+.|++||+
T Consensus        26 ~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~  103 (391)
T 1l0q_A           26 ATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDT  103 (391)
T ss_dssp             EEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             EEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEEC
Confidence            3455554 48999999999977 677899999999999999988888665 999999999999885 4556799999999


Q ss_pred             CCCceeEEeecccCceeEEEEecCCCEE-EEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC--eE-EEeecC
Q 023772           90 STGRVIRKFRGHESEVNAVKFNEYSSVV-VSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--EI-IGGSVD  165 (277)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~g~~d  165 (277)
                      ++++.+..+..| ..+.+++|+|+++.+ ++++.|+.|++||+.+...  ...+.. ...+..+.++++  .+ ++++.+
T Consensus       104 ~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~--~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~  179 (391)
T 1l0q_A          104 TSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV--INTVSV-GRSPKGIAVTPDGTKVYVANFDS  179 (391)
T ss_dssp             TTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE--EEEEEC-CSSEEEEEECTTSSEEEEEETTT
T ss_pred             CCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcE--EEEEec-CCCcceEEECCCCCEEEEEeCCC
Confidence            999988887754 467899999999977 7888899999999876532  223332 234466666544  45 577889


Q ss_pred             CcEEEEEccCCccccc-CCCCCeeEEEEeCCCCEEEEEe---cCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCc
Q 023772          166 GTVRTFDIRVGRELSD-DLGQPVNCISMSNDGNCILASC---LDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDA  241 (277)
Q Consensus       166 ~~i~i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~---~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (277)
                      +.|++||+++++.... .....+.+++|+|++++|++++   .++.|++||+.+++.+..+..+..   ...++++|+++
T Consensus       180 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~~s~dg~  256 (391)
T 1l0q_A          180 MSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD---PAGIAVTPDGK  256 (391)
T ss_dssp             TEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSS---EEEEEECTTSS
T ss_pred             CEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCC---ccEEEEccCCC
Confidence            9999999988765433 2345789999999999998888   689999999999998888876642   34567899998


Q ss_pred             eE-EeecCCCeEEEEECcCccceeeeccCcce
Q 023772          242 HV-TGGSEDGYIYFWDLVDASVVAKFKAHSLV  272 (277)
Q Consensus       242 ~l-~sgs~d~~i~iwd~~~~~~~~~~~~h~~~  272 (277)
                      ++ ++++.|+.|++||+.+++++..+..|..+
T Consensus       257 ~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~  288 (391)
T 1l0q_A          257 KVYVALSFXNTVSVIDTATNTITATMAVGKNP  288 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred             EEEEEcCCCCEEEEEECCCCcEEEEEECCcCC
Confidence            77 67789999999999999999999887655

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.9e-32  Score=225.74  Aligned_cols=224  Identities=19%  Similarity=0.276  Sum_probs=182.4

Q ss_pred             CeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC--CCceeEEeecccCceeEEEEecC--CCEEEEEeCCCc
Q 023772           50 GIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS--TGRVIRKFRGHESEVNAVKFNEY--SSVVVSAGYDQS  125 (277)
Q Consensus        50 ~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~--~~~~~~~~~~h~~~v~~i~~~~~--~~~l~s~~~d~~  125 (277)
                      |+.+..+.+|..+|++++|+|++++|++|+.|+.|++||++  +++.+..+.+|..+|.+++|+++  +++|++++.||.
T Consensus         1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~   80 (379)
T 3jrp_A            1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK   80 (379)
T ss_dssp             ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence            34567789999999999999999999999999999999998  56778889999999999999877  899999999999


Q ss_pred             EEEEeCccCCCcceEeeccccCcEEEEEecCC----eEEEeecCCcEEEEEccCCccc----ccCCCCCeeEEEEeC---
Q 023772          126 LRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT----EIIGGSVDGTVRTFDIRVGREL----SDDLGQPVNCISMSN---  194 (277)
Q Consensus       126 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~~d~~i~i~d~~~~~~~----~~~~~~~v~~~~~s~---  194 (277)
                      |++||+.............+...+..+.+++.    .+++++.|+.|++||++.....    ...+...+.+++|+|   
T Consensus        81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  160 (379)
T 3jrp_A           81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI  160 (379)
T ss_dssp             EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-
T ss_pred             EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccc
Confidence            99999987643455566677888888888754    5999999999999999876332    224567899999999   


Q ss_pred             ----------CCCEEEEEecCCeEEEEECCCCc----eEEEEeccccceeeeeeEecCC---CceEEeecCCCeEEEEEC
Q 023772          195 ----------DGNCILASCLDSTLRLLDRSTGE----LLQEYKGHICKSFKTDCCLTNS---DAHVTGGSEDGYIYFWDL  257 (277)
Q Consensus       195 ----------~~~~l~~~~~d~~i~~wd~~~~~----~~~~~~~~~~~~~~~~~~~~~~---~~~l~sgs~d~~i~iwd~  257 (277)
                                ++.+|++++.|+.|++||+++++    ++..+.+|..  ....++++|+   +.++++++.||.|++||+
T Consensus       161 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~--~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~  238 (379)
T 3jrp_A          161 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD--WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ  238 (379)
T ss_dssp             ---------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS--CEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred             cccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccC--cEeEEEECCCCCCCCeEEEEeCCCEEEEEeC
Confidence                      69999999999999999997654    4456666643  3566788999   899999999999999999


Q ss_pred             cCcc-----ceeeeccCcceeEe
Q 023772          258 VDAS-----VVAKFKAHSLVVKL  275 (277)
Q Consensus       258 ~~~~-----~~~~~~~h~~~v~~  275 (277)
                      .++.     .+.....|...|..
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~v~~  261 (379)
T 3jrp_A          239 DNEQGPWKKTLLKEEKFPDVLWR  261 (379)
T ss_dssp             SSTTSCCEEEESSSSCCSSCEEE
T ss_pred             CCCCccceeeeeccccCCCcEEE
Confidence            9864     22333346666543

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=4.9e-32  Score=225.86  Aligned_cols=198  Identities=12%  Similarity=0.143  Sum_probs=163.6

Q ss_pred             ccCCcEEEEEEeCCCCEEEE--EeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 023772           16 GHEGAVLAARFNGDGNYCLS--CGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGR   93 (277)
Q Consensus        16 ~H~~~V~~~~~~~~~~~l~s--~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~   93 (277)
                      .++..+.+++|+|||+++++  ++.|++|||||+.+++++..++ |.+.|.+++|+|+++++++++.+ .+.+|+..+++
T Consensus       131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~  208 (365)
T 4h5i_A          131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGS  208 (365)
T ss_dssp             CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCC
T ss_pred             CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCc
Confidence            45566899999999999864  5579999999999999988886 77899999999999999999855 56777777766


Q ss_pred             eeE--EeecccCceeEEEEecCCCEEEEEeCCC----cEEEEeCccCCCc--ceEeeccccCcEEEEEecCC--eEEEee
Q 023772           94 VIR--KFRGHESEVNAVKFNEYSSVVVSAGYDQ----SLRAWDCRSHSTE--PIQIIDSFQDSVMSVCLTKT--EIIGGS  163 (277)
Q Consensus        94 ~~~--~~~~h~~~v~~i~~~~~~~~l~s~~~d~----~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~g~  163 (277)
                      .+.  ....|...|.+++|+|+++.+++++.|+    .++.|++......  ....+..+...+.++.++++  .+++|+
T Consensus       209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs  288 (365)
T 4h5i_A          209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLAS  288 (365)
T ss_dssp             EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEE
T ss_pred             ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEc
Confidence            543  3456888999999999999999999888    6888987654322  22335567778888887764  599999


Q ss_pred             cCCcEEEEEccCCcccc---cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCC
Q 023772          164 VDGTVRTFDIRVGRELS---DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRST  215 (277)
Q Consensus       164 ~d~~i~i~d~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~  215 (277)
                      .|++|++||+++++.+.   ..+..+|++++|+|+|++|++||.|++|||||+..
T Consensus       289 ~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          289 NDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             TTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             CCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            99999999999887654   34677999999999999999999999999999854

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1e-31  Score=220.80  Aligned_cols=213  Identities=17%  Similarity=0.238  Sum_probs=180.9

Q ss_pred             ccceeeccCCcEEEEEEeC--CCCEEEEEeCCCcEEEEcCCCC---------eeEEEEeccCccEEEEEEcCC--CCEEE
Q 023772           10 EANVLKGHEGAVLAARFNG--DGNYCLSCGKDRTIRLWNPHRG---------IHIKTYKSHGREVRDVHVTAD--NSKLI   76 (277)
Q Consensus        10 ~~~~l~~H~~~V~~~~~~~--~~~~l~s~s~d~~v~iwd~~~~---------~~~~~~~~h~~~v~~~~~~~~--~~~l~   76 (277)
                      ....+.+|.++|.+++|+|  ++++|++|+.|+.|++||+.++         +....+..|...|.+++|+|+  +.+|+
T Consensus        49 ~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  128 (351)
T 3f3f_A           49 LSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLA  128 (351)
T ss_dssp             EEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEE
T ss_pred             ecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEE
Confidence            3455689999999999999  6999999999999999999876         568888999999999999999  99999


Q ss_pred             EEeCCCcEEEEECCCCceeEEee-------------cccCceeEEEEecC---CCEEEEEeCCCcEEEEeCccCCCcceE
Q 023772           77 SCGGDRQIFYWDVSTGRVIRKFR-------------GHESEVNAVKFNEY---SSVVVSAGYDQSLRAWDCRSHSTEPIQ  140 (277)
Q Consensus        77 t~s~d~~v~~wd~~~~~~~~~~~-------------~h~~~v~~i~~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~  140 (277)
                      +++.|+.|++||+.+++.+..+.             .|...+.++.|+|+   +.++++++.|+.+.+|+..........
T Consensus       129 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  208 (351)
T 3f3f_A          129 CLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAA  208 (351)
T ss_dssp             EEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEE
T ss_pred             EecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeee
Confidence            99999999999998887654443             57889999999997   899999999999988887665444456


Q ss_pred             eeccccCcEEEEEecCC------eEEEeecCCcEEEEEccCCc-------------------------------------
Q 023772          141 IIDSFQDSVMSVCLTKT------EIIGGSVDGTVRTFDIRVGR-------------------------------------  177 (277)
Q Consensus       141 ~~~~~~~~~~~~~~~~~------~~~~g~~d~~i~i~d~~~~~-------------------------------------  177 (277)
                      .+..+...+..+.+++.      .+++|+.||.|++||++.+.                                     
T Consensus       209 ~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (351)
T 3f3f_A          209 KLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKA  288 (351)
T ss_dssp             ECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-------------------------------------
T ss_pred             ecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceee
Confidence            66778888999998876      48999999999999998641                                     


Q ss_pred             ---------ccc--cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEE
Q 023772          178 ---------ELS--DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEY  222 (277)
Q Consensus       178 ---------~~~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~  222 (277)
                               .+.  ..+...|++++|+|++++|++++.||.|++||+.+++..+.+
T Consensus       289 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          289 ELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             --CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             eecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence                     111  124568999999999999999999999999999988665544

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=3.9e-31  Score=222.38  Aligned_cols=239  Identities=15%  Similarity=0.255  Sum_probs=170.2

Q ss_pred             eccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCC---CEEEEEeCCCcEEEEECC
Q 023772           15 KGHEGAVLAARFNG-DGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN---SKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        15 ~~H~~~V~~~~~~~-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~t~s~d~~v~~wd~~   90 (277)
                      .+|.++|.+++|+| ++.++++++.|+.|++||+.+++....+. +...+.++.+.+.+   .++++++.|+.|++||++
T Consensus        96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  174 (408)
T 4a11_B           96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK  174 (408)
T ss_dssp             TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred             ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence            36999999999999 77899999999999999999998888876 67889999999854   499999999999999999


Q ss_pred             CCceeEEeecccCceeEEEEecCCC-EEEEEeCCCcEEEEeCccCCCcceEee---------------ccccCcEEEEEe
Q 023772           91 TGRVIRKFRGHESEVNAVKFNEYSS-VVVSAGYDQSLRAWDCRSHSTEPIQII---------------DSFQDSVMSVCL  154 (277)
Q Consensus        91 ~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~---------------~~~~~~~~~~~~  154 (277)
                      +++.+..+..|..+|.+++|+|+++ ++++++.||.|++||++.... ....+               ..+...+..+.+
T Consensus       175 ~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  253 (408)
T 4a11_B          175 SGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASG-CLITLDQHNGKKSQAVESANTAHNGKVNGLCF  253 (408)
T ss_dssp             SSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSC-CSEECCTTTTCSCCCTTTSSCSCSSCEEEEEE
T ss_pred             CcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCc-ccccccccccccceeeccccccccCceeEEEE
Confidence            9999999999999999999999988 589999999999999976432 11111               346677888888


Q ss_pred             cCC--eEEEeecCCcEEEEEccCCcccc-------------------------------------------------cCC
Q 023772          155 TKT--EIIGGSVDGTVRTFDIRVGRELS-------------------------------------------------DDL  183 (277)
Q Consensus       155 ~~~--~~~~g~~d~~i~i~d~~~~~~~~-------------------------------------------------~~~  183 (277)
                      +++  .+++++.|+.|++||+++++...                                                 ..+
T Consensus       254 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~  333 (408)
T 4a11_B          254 TSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGH  333 (408)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCC
T ss_pred             cCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccC
Confidence            654  59999999999999998654221                                                 113


Q ss_pred             CCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcC
Q 023772          184 GQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVD  259 (277)
Q Consensus       184 ~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~  259 (277)
                      ..+|++++|+|++++|++++.||.|++||+.+++.+.........   ... .........+...|+.+++|+...
T Consensus       334 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~W~~~~  405 (408)
T 4a11_B          334 YKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQL-NPAFEDAWSSSDEEGGTSAWSHPQ  405 (408)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTSCEEEEEECC--------------------------------------------
T ss_pred             CCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---ccc-ccccceeecccCccCceeecCCcc
Confidence            457999999999999999999999999999998877655433211   111 112334456677899999998763

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.1e-33  Score=236.82  Aligned_cols=192  Identities=9%  Similarity=0.115  Sum_probs=161.5

Q ss_pred             ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCc-----cEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772           16 GHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGR-----EVRDVHVTADNSKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        16 ~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~t~s~d~~v~~wd~~   90 (277)
                      +|+..|.+++|+|+|.+|++++.||+|++||...  ++..+. |..     .+.+++|+|++++|++|+.||+|++||+.
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~  159 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR  159 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence            6788999999999999999999999999999544  666677 665     49999999999999999999999999999


Q ss_pred             CCce-------eEEe----ecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCc-ceEee-ccccCcEEEEEecCC
Q 023772           91 TGRV-------IRKF----RGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTE-PIQII-DSFQDSVMSVCLTKT  157 (277)
Q Consensus        91 ~~~~-------~~~~----~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~-~~~~~~~~~~~~~~~  157 (277)
                      ++..       +.++    .+|...|.+++|+|++  +++++.|++|++||+...... ....+ ..+...|.++.+.++
T Consensus       160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~  237 (588)
T 2j04_A          160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDY  237 (588)
T ss_dssp             CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETT
T ss_pred             CCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEECC
Confidence            8753       5676    6778899999999999  888999999999999765432 12333 356677888888766


Q ss_pred             eEEEeecCCcEEEEEccCCcc-ccc-CCCCCeeEEEE--eCCCCEEEEEecCCeEEEEECC
Q 023772          158 EIIGGSVDGTVRTFDIRVGRE-LSD-DLGQPVNCISM--SNDGNCILASCLDSTLRLLDRS  214 (277)
Q Consensus       158 ~~~~g~~d~~i~i~d~~~~~~-~~~-~~~~~v~~~~~--s~~~~~l~~~~~d~~i~~wd~~  214 (277)
                      .+++++ +++|++||+..++. ... .+...+..+.|  +|++..|+++++||+ ++|...
T Consensus       238 ~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          238 KVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             EEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred             EEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence            788776 79999999987765 322 56678999999  999999999999999 999975

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.1e-31  Score=216.36  Aligned_cols=229  Identities=12%  Similarity=0.046  Sum_probs=174.4

Q ss_pred             CcEEEEEEeCCCCEEEEEeCCCcEEEEcCC---------CCeeEEEEe-ccCccEEEEEEcC--CCCEEEEEeCCCcEEE
Q 023772           19 GAVLAARFNGDGNYCLSCGKDRTIRLWNPH---------RGIHIKTYK-SHGREVRDVHVTA--DNSKLISCGGDRQIFY   86 (277)
Q Consensus        19 ~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~---------~~~~~~~~~-~h~~~v~~~~~~~--~~~~l~t~s~d~~v~~   86 (277)
                      ++|.++.|+|+   +++++.|+++++|+..         +++.+..+. .|..+|.+++|+|  +++++++++.|++|++
T Consensus        77 ~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~  153 (343)
T 3lrv_A           77 PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGF  153 (343)
T ss_dssp             ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred             CCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence            45666667776   8999999999999655         455454544 6778999999999  9999999999999999


Q ss_pred             EECCCCceeEEee-cccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeecc-ccCcEEEEEecCC--eEEEe
Q 023772           87 WDVSTGRVIRKFR-GHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDS-FQDSVMSVCLTKT--EIIGG  162 (277)
Q Consensus        87 wd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~g  162 (277)
                      ||+++++++..+. .|...+.+++|+|++.++++|+.||.|++||+++..... ..+.. |...+..+.++++  .++++
T Consensus       154 wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~-~~~~~~h~~~v~~l~fs~~g~~l~s~  232 (343)
T 3lrv_A          154 QSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQAS-SRFPVDEEAKIKEVKFADNGYWMVVE  232 (343)
T ss_dssp             EESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCC-EECCCCTTSCEEEEEECTTSSEEEEE
T ss_pred             EECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCc-cEEeccCCCCEEEEEEeCCCCEEEEE
Confidence            9999998876664 456689999999999999999999999999998764331 33444 7889999988765  57888


Q ss_pred             ecCCcEEEEEccCCcccccCC-----CCCe--eEEEEeCCCCEEEEEec-CCeEEEEECCCCceEEEEeccccceeeeee
Q 023772          163 SVDGTVRTFDIRVGRELSDDL-----GQPV--NCISMSNDGNCILASCL-DSTLRLLDRSTGELLQEYKGHICKSFKTDC  234 (277)
Q Consensus       163 ~~d~~i~i~d~~~~~~~~~~~-----~~~v--~~~~~s~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  234 (277)
                      + |+.|++||+++.+.+....     ..++  .+++|+|+|++|++++. |+.+++|++.........      ......
T Consensus       233 ~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~  305 (343)
T 3lrv_A          233 C-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESAL  305 (343)
T ss_dssp             E-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEEC
T ss_pred             e-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeE
Confidence            8 5699999999876543221     1233  36999999999999998 999999999665433222      112233


Q ss_pred             EecC---CCceEEeecCCCeEEEEECc
Q 023772          235 CLTN---SDAHVTGGSEDGYIYFWDLV  258 (277)
Q Consensus       235 ~~~~---~~~~l~sgs~d~~i~iwd~~  258 (277)
                      .+.+   +...+++++.|+.++++-..
T Consensus       306 ~~~~~~~~~~~l~~~~~d~~~~~~~~~  332 (343)
T 3lrv_A          306 CLQSDTADFTDMDVVCGDGGIAAILKT  332 (343)
T ss_dssp             CC----CCCCEEEEEEETTEEEEEEEC
T ss_pred             ecCccccccceeEEEecCCceEEEEec
Confidence            4555   77889999999999987544

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.98  E-value=1.2e-29  Score=215.59  Aligned_cols=239  Identities=13%  Similarity=0.077  Sum_probs=195.9

Q ss_pred             eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEE-EEeCCCcEEEEECCCC
Q 023772           14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLI-SCGGDRQIFYWDVSTG   92 (277)
Q Consensus        14 l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-t~s~d~~v~~wd~~~~   92 (277)
                      +.+|.+.|.+++|++++.++++++.|+.|++||+.+++.+..+..|...+.+++|+|++++++ +++.|+.|++||+.++
T Consensus       165 ~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~  244 (433)
T 3bws_A          165 YKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK  244 (433)
T ss_dssp             HHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred             ccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC
Confidence            458999999999999999999999999999999999999999999999999999999999885 4558999999999999


Q ss_pred             ceeEEeecccCceeEEEEecCCCEEEEEe--------CCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC--e-EEE
Q 023772           93 RVIRKFRGHESEVNAVKFNEYSSVVVSAG--------YDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--E-IIG  161 (277)
Q Consensus        93 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~~--------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~  161 (277)
                      +.+..+..+ ..+.+++++|+++.+++++        .|+.|++||++....  .... .+...+..+.++++  . +++
T Consensus       245 ~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~--~~~~-~~~~~~~~~~~~~~g~~l~~~  320 (433)
T 3bws_A          245 LEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKL--IDTI-GPPGNKRHIVSGNTENKIYVS  320 (433)
T ss_dssp             EEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEE--EEEE-EEEECEEEEEECSSTTEEEEE
T ss_pred             cEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcE--Eeec-cCCCCcceEEECCCCCEEEEE
Confidence            988877754 4589999999999999888        588999999976432  2222 22335556666543  3 566


Q ss_pred             eecCCcEEEEEccCCccccc-CCCCCeeEEEEeCCCCEEEEEec---------------CCeEEEEECCCCceEEEEecc
Q 023772          162 GSVDGTVRTFDIRVGRELSD-DLGQPVNCISMSNDGNCILASCL---------------DSTLRLLDRSTGELLQEYKGH  225 (277)
Q Consensus       162 g~~d~~i~i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~---------------d~~i~~wd~~~~~~~~~~~~~  225 (277)
                      ++.|+.|++||+.+++.... .....+.+++|+|+|+++++++.               ||.|++||..+++.+..+..+
T Consensus       321 ~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~  400 (433)
T 3bws_A          321 DMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG  400 (433)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS
T ss_pred             ecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC
Confidence            78999999999987765432 34567899999999999888876               579999999999998888764


Q ss_pred             ccceeeeeeEecCCCceEEeec-CCCeEEEEECcC
Q 023772          226 ICKSFKTDCCLTNSDAHVTGGS-EDGYIYFWDLVD  259 (277)
Q Consensus       226 ~~~~~~~~~~~~~~~~~l~sgs-~d~~i~iwd~~~  259 (277)
                      .   ....++++|+++++++++ .|+.|++|+++.
T Consensus       401 ~---~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          401 N---QPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             S---SEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             C---CCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            2   345677899999988765 599999999863

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.98  E-value=7.4e-31  Score=220.88  Aligned_cols=252  Identities=17%  Similarity=0.228  Sum_probs=172.8

Q ss_pred             EEEEE---eCCCCEEEEEeCCCcEEEEcCCC-------Ce---eEEEEeccCccEEEEEE--------------------
Q 023772           22 LAARF---NGDGNYCLSCGKDRTIRLWNPHR-------GI---HIKTYKSHGREVRDVHV--------------------   68 (277)
Q Consensus        22 ~~~~~---~~~~~~l~s~s~d~~v~iwd~~~-------~~---~~~~~~~h~~~v~~~~~--------------------   68 (277)
                      .++.|   ++++..+++++.|+.|++|+...       +.   .+..+ .+..++..+.+                    
T Consensus        19 ~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (393)
T 4gq1_A           19 YTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTI-QTGLPTLHLSFSSSCSYSENLHDGDGNVNSS   97 (393)
T ss_dssp             EEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEE-ECSSCEEEEEECTTCEEECC----------C
T ss_pred             eEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEE-ecCCCeeeEeecCCccccccccCCCcceeec
Confidence            34555   44555566666788899996421       11   11111 23334444443                    


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCcee-----EEeecccCceeEEEEec--------CCCEEEEEeCCCcEEEEeCccCC
Q 023772           69 TADNSKLISCGGDRQIFYWDVSTGRVI-----RKFRGHESEVNAVKFNE--------YSSVVVSAGYDQSLRAWDCRSHS  135 (277)
Q Consensus        69 ~~~~~~l~t~s~d~~v~~wd~~~~~~~-----~~~~~h~~~v~~i~~~~--------~~~~l~s~~~d~~i~iwd~~~~~  135 (277)
                      .+++.+|++++.|++|++||+++++..     ..+.+|...|++++|+|        ++++|+||+.|++|++||++...
T Consensus        98 ~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~  177 (393)
T 4gq1_A           98 PVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG  177 (393)
T ss_dssp             CEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE
T ss_pred             CCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc
Confidence            345567999999999999999887653     34678999999999997        78899999999999999987543


Q ss_pred             CcceEeeccccCcEEEEEecCC---eEEEeecCCcEEEEEccCCccccc---------------------------CCCC
Q 023772          136 TEPIQIIDSFQDSVMSVCLTKT---EIIGGSVDGTVRTFDIRVGRELSD---------------------------DLGQ  185 (277)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~d~~i~i~d~~~~~~~~~---------------------------~~~~  185 (277)
                        +......+...+.++.+.|.   .+++|+.|++|++||+++++....                           .+..
T Consensus       178 --~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  255 (393)
T 4gq1_A          178 --PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIAS  255 (393)
T ss_dssp             --EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSS
T ss_pred             --eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccc
Confidence              34445567778888888764   489999999999999987643211                           1234


Q ss_pred             CeeEEEEe-CCCCEEEEEecCCeEEEEECCCCceEEEEeccccce----------------eeeeeEecC--CCceEEee
Q 023772          186 PVNCISMS-NDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKS----------------FKTDCCLTN--SDAHVTGG  246 (277)
Q Consensus       186 ~v~~~~~s-~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~----------------~~~~~~~~~--~~~~l~sg  246 (277)
                      .+.++.|+ |+++.|++++.|+++++||+..++....+..|....                ....+++.+  ++.++++|
T Consensus       256 ~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg  335 (393)
T 4gq1_A          256 SLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAH  335 (393)
T ss_dssp             SCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEE
T ss_pred             cceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEE
Confidence            57888887 799999999999999999998876665554432111                111122332  45678899


Q ss_pred             cCCCeEEEEECcCccceeeeccCcceeEee
Q 023772          247 SEDGYIYFWDLVDASVVAKFKAHSLVVKLL  276 (277)
Q Consensus       247 s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  276 (277)
                      +.||.|++||+.+++.+..+.+|..+|+-+
T Consensus       336 s~Dg~V~lwd~~~~~~~~~~~~~~~~V~sv  365 (393)
T 4gq1_A          336 SQHGLIQLINTYEKDSNSIPIQLGMPIVDF  365 (393)
T ss_dssp             TTTTEEEEEETTCTTCCEEEEECSSCEEEE
T ss_pred             CCCCEEEEEECCCCcEEEEecCCCCcEEEE
Confidence            999999999999999999999998888754

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.9e-30  Score=235.15  Aligned_cols=220  Identities=19%  Similarity=0.276  Sum_probs=179.5

Q ss_pred             EEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC--CCceeEEeecccCceeEEEEecC--CCEEEEEeCCCcEEE
Q 023772           53 IKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS--TGRVIRKFRGHESEVNAVKFNEY--SSVVVSAGYDQSLRA  128 (277)
Q Consensus        53 ~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~--~~~~~~~~~~h~~~v~~i~~~~~--~~~l~s~~~d~~i~i  128 (277)
                      ...+.+|.++|++++|+|++++|++|+.||+|++||+.  +++.+..+.+|..+|.+++|+++  ++++++|+.||+|++
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v   81 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   81 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence            34678999999999999999999999999999999998  55778889999999999999988  899999999999999


Q ss_pred             EeCccCCCcceEeeccccCcEEEEEecCC----eEEEeecCCcEEEEEccCCccc----ccCCCCCeeEEEEeC------
Q 023772          129 WDCRSHSTEPIQIIDSFQDSVMSVCLTKT----EIIGGSVDGTVRTFDIRVGREL----SDDLGQPVNCISMSN------  194 (277)
Q Consensus       129 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~~d~~i~i~d~~~~~~~----~~~~~~~v~~~~~s~------  194 (277)
                      ||+.............+...+..+.+++.    .+++|+.||.|++||++.+...    ...+...+.+++|+|      
T Consensus        82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~  161 (753)
T 3jro_A           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED  161 (753)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred             EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence            99987544455666778888988888754    5999999999999999876322    224567899999999      


Q ss_pred             -------CCCEEEEEecCCeEEEEECCCC----ceEEEEeccccceeeeeeEecCC---CceEEeecCCCeEEEEECcCc
Q 023772          195 -------DGNCILASCLDSTLRLLDRSTG----ELLQEYKGHICKSFKTDCCLTNS---DAHVTGGSEDGYIYFWDLVDA  260 (277)
Q Consensus       195 -------~~~~l~~~~~d~~i~~wd~~~~----~~~~~~~~~~~~~~~~~~~~~~~---~~~l~sgs~d~~i~iwd~~~~  260 (277)
                             ++.++++|+.||.|++||++++    .+...+.+|..  .+..++++|+   +.++++|+.||.|++||+.++
T Consensus       162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~--~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~  239 (753)
T 3jro_A          162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD--WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE  239 (753)
T ss_dssp             -----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS--CEEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred             cccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCC--cEEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence                   5899999999999999999876    45566777754  3566778999   899999999999999999987


Q ss_pred             c-----ceeeeccCcceeE
Q 023772          261 S-----VVAKFKAHSLVVK  274 (277)
Q Consensus       261 ~-----~~~~~~~h~~~v~  274 (277)
                      +     ......+|...|.
T Consensus       240 ~~~~~~~~~~~~~~~~~v~  258 (753)
T 3jro_A          240 QGPWKKTLLKEEKFPDVLW  258 (753)
T ss_dssp             SSCCBCCBSSSSCCSSCCC
T ss_pred             CCcceeEEeccCCCCCceE
Confidence            4     3344445665554

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=1.7e-29  Score=214.69  Aligned_cols=247  Identities=13%  Similarity=0.119  Sum_probs=198.5

Q ss_pred             CcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEE-----EEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 023772           19 GAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIK-----TYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGR   93 (277)
Q Consensus        19 ~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~   93 (277)
                      ..+.+++|+|++.++++++.|+.|++||+.+++...     .+.+|...|.+++|++++..+++++.|+.|++||+++++
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~  202 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA  202 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence            345589999988888899999999999999988876     345788899999999999999999999999999999999


Q ss_pred             eeEEeecccCceeEEEEecCCCEEE-EEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEee-------
Q 023772           94 VIRKFRGHESEVNAVKFNEYSSVVV-SAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGS-------  163 (277)
Q Consensus        94 ~~~~~~~h~~~v~~i~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~-------  163 (277)
                      .+..+..|...+.+++|+|+++.++ +++.|+.|++||+++..  ....+.. ...+..+.+++  ..+++++       
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~--~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~  279 (433)
T 3bws_A          203 YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL--EIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQE  279 (433)
T ss_dssp             EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE--EEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTC
T ss_pred             EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc--EEEEecC-CCCceEEEEcCCCCEEEEEECCCCccc
Confidence            9999999999999999999999875 45589999999987543  2223322 33466666664  4577766       


Q ss_pred             -cCCcEEEEEccCCccccc-CCCCCeeEEEEeCCCCEE-EEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCC
Q 023772          164 -VDGTVRTFDIRVGRELSD-DLGQPVNCISMSNDGNCI-LASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSD  240 (277)
Q Consensus       164 -~d~~i~i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l-~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (277)
                       .|+.|++||+++++.... .+...+.+++|+|+++++ ++++.|+.|++||+.+++.+..+...   .....++++|++
T Consensus       280 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~---~~~~~~~~s~dg  356 (433)
T 3bws_A          280 SGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVF---DKPNTIALSPDG  356 (433)
T ss_dssp             SCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECS---SSEEEEEECTTS
T ss_pred             cCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCC---CCCCeEEEcCCC
Confidence             488999999988765433 223478899999999765 56689999999999999888777532   224567789999


Q ss_pred             ceEEeecC---------------CCeEEEEECcCccceeeeccCcc
Q 023772          241 AHVTGGSE---------------DGYIYFWDLVDASVVAKFKAHSL  271 (277)
Q Consensus       241 ~~l~sgs~---------------d~~i~iwd~~~~~~~~~~~~h~~  271 (277)
                      +++++++.               ||.|++||..+++.+..+..+..
T Consensus       357 ~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~  402 (433)
T 3bws_A          357 KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQ  402 (433)
T ss_dssp             SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSS
T ss_pred             CEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCC
Confidence            98887765               67999999999999988887643

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=1.8e-29  Score=214.81  Aligned_cols=207  Identities=21%  Similarity=0.348  Sum_probs=175.6

Q ss_pred             cccceeeccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEcCCCCee-------EEEEeccCccEEEEEEcC-CCCEEEEEe
Q 023772            9 TEANVLKGHEGAVLAARFNGDGN-YCLSCGKDRTIRLWNPHRGIH-------IKTYKSHGREVRDVHVTA-DNSKLISCG   79 (277)
Q Consensus         9 ~~~~~l~~H~~~V~~~~~~~~~~-~l~s~s~d~~v~iwd~~~~~~-------~~~~~~h~~~v~~~~~~~-~~~~l~t~s   79 (277)
                      .....+.+|.++|.+++|+|++. +|++|+.||.|++||+.++..       ...+..|...|.+++|+| ++..|++++
T Consensus       172 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~  251 (430)
T 2xyi_A          172 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVA  251 (430)
T ss_dssp             CCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEE
T ss_pred             CCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEe
Confidence            34566789999999999999998 999999999999999987321       466778999999999999 677899999


Q ss_pred             CCCcEEEEECCCC---ceeEEeecccCceeEEEEecCCC-EEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec
Q 023772           80 GDRQIFYWDVSTG---RVIRKFRGHESEVNAVKFNEYSS-VVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT  155 (277)
Q Consensus        80 ~d~~v~~wd~~~~---~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  155 (277)
                      .|+.|++||+.++   +.+..+..|...|++++|+|++. ++++|+.||+|++||++... .++..+..+...+.++.++
T Consensus       252 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~-~~~~~~~~h~~~v~~i~~s  330 (430)
T 2xyi_A          252 DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-LKLHSFESHKDEIFQVQWS  330 (430)
T ss_dssp             TTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-SCSEEEECCSSCEEEEEEC
T ss_pred             CCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC-CCeEEeecCCCCEEEEEEC
Confidence            9999999999987   57778889999999999999987 68999999999999998643 3455666788889999988


Q ss_pred             CCe---EEEeecCCcEEEEEccCCc--------------ccc--cCCCCCeeEEEEeCCCC-EEEEEecCCeEEEEECCC
Q 023772          156 KTE---IIGGSVDGTVRTFDIRVGR--------------ELS--DDLGQPVNCISMSNDGN-CILASCLDSTLRLLDRST  215 (277)
Q Consensus       156 ~~~---~~~g~~d~~i~i~d~~~~~--------------~~~--~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~~wd~~~  215 (277)
                      +..   +++++.|+.|++||+....              .+.  ..+...|++++|+|++. +|++++.|+.|++|++..
T Consensus       331 p~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          331 PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             SSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred             CCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence            643   8899999999999998621              111  13456799999999999 899999999999999875


Q ss_pred             C
Q 023772          216 G  216 (277)
Q Consensus       216 ~  216 (277)
                      +
T Consensus       411 ~  411 (430)
T 2xyi_A          411 N  411 (430)
T ss_dssp             H
T ss_pred             c
Confidence            4

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=2.1e-28  Score=205.29  Aligned_cols=235  Identities=12%  Similarity=0.135  Sum_probs=189.4

Q ss_pred             CEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEEeecccCceeEEE
Q 023772           31 NYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKL-ISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVK  109 (277)
Q Consensus        31 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~  109 (277)
                      .++++++.|+.|++||+.+++.+..+..|. .+.+++|+|+++++ ++++.|++|++||+++++++..+..+. .+.+++
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~   80 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA   80 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence            467889999999999999999999998775 58999999999987 677799999999999999988887655 899999


Q ss_pred             EecCCCEEE-EEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC--eE-EEeecCCcEEEEEccCCccccc-CCC
Q 023772          110 FNEYSSVVV-SAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--EI-IGGSVDGTVRTFDIRVGRELSD-DLG  184 (277)
Q Consensus       110 ~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~g~~d~~i~i~d~~~~~~~~~-~~~  184 (277)
                      |+|+++.++ +++.|+.|++||+.+...  ...+. ....+..+.++++  .+ ++++.++.|++||+.+++.... ...
T Consensus        81 ~spdg~~l~~~~~~~~~v~v~d~~~~~~--~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~  157 (391)
T 1l0q_A           81 VSPDGKQVYVTNMASSTLSVIDTTSNTV--AGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG  157 (391)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEE--EEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred             ECCCCCEEEEEECCCCEEEEEECCCCeE--EEEEe-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC
Confidence            999999775 455679999999976532  22232 2345666777654  45 6788899999999988765433 234


Q ss_pred             CCeeEEEEeCCCCEE-EEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeec---CCCeEEEEECcCc
Q 023772          185 QPVNCISMSNDGNCI-LASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGS---EDGYIYFWDLVDA  260 (277)
Q Consensus       185 ~~v~~~~~s~~~~~l-~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs---~d~~i~iwd~~~~  260 (277)
                      ..+.+++|+|+++++ ++++.|+.|++||+++++.+..+..+.   ....++++|+++++++++   .|+.|++||+.++
T Consensus       158 ~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~  234 (391)
T 1l0q_A          158 RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA---APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN  234 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS---EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred             CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCC---CccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence            567999999999987 567789999999999998887776442   345567899999888877   6999999999999


Q ss_pred             cceeeeccCccee
Q 023772          261 SVVAKFKAHSLVV  273 (277)
Q Consensus       261 ~~~~~~~~h~~~v  273 (277)
                      +.+..+..|..+.
T Consensus       235 ~~~~~~~~~~~~~  247 (391)
T 1l0q_A          235 KITARIPVGPDPA  247 (391)
T ss_dssp             EEEEEEECCSSEE
T ss_pred             eEEEEEecCCCcc
Confidence            9999998876543

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=1.9e-28  Score=203.44  Aligned_cols=237  Identities=14%  Similarity=0.132  Sum_probs=179.8

Q ss_pred             cCCcEEEEEEeCCCCEE-EEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ce
Q 023772           17 HEGAVLAARFNGDGNYC-LSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTG-RV   94 (277)
Q Consensus        17 H~~~V~~~~~~~~~~~l-~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~-~~   94 (277)
                      +...+..+.+.++++++ ++++.|++|++||..+++.+..+. |..+|.++.++++.  ++.+ .|+.|++||+.++ +.
T Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~  132 (355)
T 3vu4_A           57 EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKR  132 (355)
T ss_dssp             ECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCB
T ss_pred             ecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCcee
Confidence            33457788899888877 568888999999999999998887 56799999998753  4443 4789999999988 77


Q ss_pred             eEEeecccCceeEEEEecCCCEEEE--EeCCCcEEEEeCccCCC-------------cc-eEeeccccCcEEEEEecCC-
Q 023772           95 IRKFRGHESEVNAVKFNEYSSVVVS--AGYDQSLRAWDCRSHST-------------EP-IQIIDSFQDSVMSVCLTKT-  157 (277)
Q Consensus        95 ~~~~~~h~~~v~~i~~~~~~~~l~s--~~~d~~i~iwd~~~~~~-------------~~-~~~~~~~~~~~~~~~~~~~-  157 (277)
                      +.++..   +...+++++  ..++.  |+.||.|++||++....             .+ ...+..|...+.++.++++ 
T Consensus       133 ~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g  207 (355)
T 3vu4_A          133 ITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS  207 (355)
T ss_dssp             SSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTS
T ss_pred             eEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC
Confidence            666654   444455666  55555  58899999999976430             12 5567788899999988764 


Q ss_pred             -eEEEeecCCc-EEEEEccCCccccc---C-CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceE--EEEec-----
Q 023772          158 -EIIGGSVDGT-VRTFDIRVGRELSD---D-LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELL--QEYKG-----  224 (277)
Q Consensus       158 -~~~~g~~d~~-i~i~d~~~~~~~~~---~-~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~--~~~~~-----  224 (277)
                       .+++|+.|++ |++||+++++.+..   . +..+|++++|+|+|++|++++.|++|++||++.+...  ..+.+     
T Consensus       208 ~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~  287 (355)
T 3vu4_A          208 DMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMK  287 (355)
T ss_dssp             SEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECC
T ss_pred             CEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeecc
Confidence             5999999998 99999998876543   2 6678999999999999999999999999999765321  11111     


Q ss_pred             -------------c-ccceeeeeeEecCCCceEEeecCCCeEEEEECcCccc
Q 023772          225 -------------H-ICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASV  262 (277)
Q Consensus       225 -------------~-~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~  262 (277)
                                   . ........+++++++.++++++.||.+++|++..++.
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~  339 (355)
T 3vu4_A          288 YFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDE  339 (355)
T ss_dssp             CCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETT
T ss_pred             ccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCC
Confidence                         0 0000114467899999999999999999999887654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=1.6e-26  Score=195.71  Aligned_cols=253  Identities=15%  Similarity=0.074  Sum_probs=193.5

Q ss_pred             eeeccCCcEEEEEEeC--------------CCCEEEEEeCC------CcEEEEcCCCCeeEEEEeccCccEEEEEEcCCC
Q 023772           13 VLKGHEGAVLAARFNG--------------DGNYCLSCGKD------RTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN   72 (277)
Q Consensus        13 ~l~~H~~~V~~~~~~~--------------~~~~l~s~s~d------~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~   72 (277)
                      .+.+|...+..+++++              .+..++.++.+      +.|++||... ...+.+..|...+.+++|+|++
T Consensus       112 ~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg  190 (415)
T 2hqs_A          112 SYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDG  190 (415)
T ss_dssp             EEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTS
T ss_pred             EEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCC
Confidence            3677777777766654              25677766654      7999999874 4567788899999999999999


Q ss_pred             CEEEEEeCCC---cEEEEECCCCceeEEeecccCceeEEEEecCCCEEE-EEeCCCc--EEEEeCccCCCcceEeecccc
Q 023772           73 SKLISCGGDR---QIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVV-SAGYDQS--LRAWDCRSHSTEPIQIIDSFQ  146 (277)
Q Consensus        73 ~~l~t~s~d~---~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~-s~~~d~~--i~iwd~~~~~~~~~~~~~~~~  146 (277)
                      ++|++++.|+   .|++||++++++. .+..|...+.+++|+|+++.|+ +++.|+.  |++||+.+..   ...+..+.
T Consensus       191 ~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~---~~~l~~~~  266 (415)
T 2hqs_A          191 SKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---IRQVTDGR  266 (415)
T ss_dssp             SEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC---EEECCCCS
T ss_pred             CEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC---EEeCcCCC
Confidence            9999999885   9999999998875 5677888999999999999777 6666665  9999987643   23444555


Q ss_pred             CcEEEEEecCC--eEEEeec-CC--cEEEEEccCCcccc-cCCCCCeeEEEEeCCCCEEEEEecC---CeEEEEECCCCc
Q 023772          147 DSVMSVCLTKT--EIIGGSV-DG--TVRTFDIRVGRELS-DDLGQPVNCISMSNDGNCILASCLD---STLRLLDRSTGE  217 (277)
Q Consensus       147 ~~~~~~~~~~~--~~~~g~~-d~--~i~i~d~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~~wd~~~~~  217 (277)
                      ..+..+.++++  .++.++. ++  .|.+||+..++... ......+.+++|+|+|++|+.++.+   ..|++||+.+++
T Consensus       267 ~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~  346 (415)
T 2hqs_A          267 SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG  346 (415)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC
T ss_pred             CcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC
Confidence            66777777654  4776665 45  57777887765322 2344578899999999999888765   589999999887


Q ss_pred             eEEEEeccccceeeeeeEecCCCceEEeecCCC---eEEEEECcCccceeeeccCcceeEe
Q 023772          218 LLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDG---YIYFWDLVDASVVAKFKAHSLVVKL  275 (277)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~---~i~iwd~~~~~~~~~~~~h~~~v~~  275 (277)
                      .. .+..+.   ....++++|++++|+.++.|+   .|++||+. ++....+.+|...|+-
T Consensus       347 ~~-~l~~~~---~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~  402 (415)
T 2hqs_A          347 VQ-VLSSTF---LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKF  402 (415)
T ss_dssp             EE-ECCCSS---SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEE
T ss_pred             EE-EecCCC---CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcC
Confidence            64 444442   345578999999999888777   89999987 6677889999887764

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=5.6e-26  Score=183.37  Aligned_cols=244  Identities=15%  Similarity=0.166  Sum_probs=152.7

Q ss_pred             EEEEEEeCCC--C-EEEEEeCCCcEEEEcCCCC---eeEEEEeccCccEEEEEEcCCCCEEEEEeC-C---CcEEEEECC
Q 023772           21 VLAARFNGDG--N-YCLSCGKDRTIRLWNPHRG---IHIKTYKSHGREVRDVHVTADNSKLISCGG-D---RQIFYWDVS   90 (277)
Q Consensus        21 V~~~~~~~~~--~-~l~s~s~d~~v~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~-d---~~v~~wd~~   90 (277)
                      |.++.|-..|  + -++++++ .+|++|+..++   +.+.+.+.|..+|..+.+.|+...|+...- .   +.|+..-..
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s  120 (356)
T 2w18_A           42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS  120 (356)
T ss_dssp             EEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred             EeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence            3445554333  2 4456666 79999999998   889999999888888888875433322110 0   011111000


Q ss_pred             CC----ceeEEeecccCceeEEEEecCCCEEEEEe--CCCcEEEEeCcc-CCCcceEeeccccCcEEEEEe---cCCeEE
Q 023772           91 TG----RVIRKFRGHESEVNAVKFNEYSSVVVSAG--YDQSLRAWDCRS-HSTEPIQIIDSFQDSVMSVCL---TKTEII  160 (277)
Q Consensus        91 ~~----~~~~~~~~h~~~v~~i~~~~~~~~l~s~~--~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~  160 (277)
                      ..    .....-.+|...|.++   ++++++.+++  .|++|++|++.. ++.......+.....+.++++   ++..++
T Consensus       121 pd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~La  197 (356)
T 2w18_A          121 SDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALL  197 (356)
T ss_dssp             -----CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEE
T ss_pred             CCccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEE
Confidence            00    1111112344444443   4555555533  588888888743 222122223444445556665   446799


Q ss_pred             EeecCCcEEEEEccCCcccccCC-----CCCeeEEEEeCCCCEE------------EEEecCCeEEEEECCCCceEEEEe
Q 023772          161 GGSVDGTVRTFDIRVGRELSDDL-----GQPVNCISMSNDGNCI------------LASCLDSTLRLLDRSTGELLQEYK  223 (277)
Q Consensus       161 ~g~~d~~i~i~d~~~~~~~~~~~-----~~~v~~~~~s~~~~~l------------~~~~~d~~i~~wd~~~~~~~~~~~  223 (277)
                      +|+.|++|++||+.+++.+....     ...+.+++|+|+|.++            ++|+.|++|++||..+++.+..+.
T Consensus       198 SgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~  277 (356)
T 2w18_A          198 GTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVML  277 (356)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEE
T ss_pred             EecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEE
Confidence            99999999999999998655432     2357788999999876            567889999999999999887652


Q ss_pred             -----ccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCcce
Q 023772          224 -----GHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLV  272 (277)
Q Consensus       224 -----~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~  272 (277)
                           +|...  ....  ..++.++++|+.|++|+|||+.+++++++|++|...
T Consensus       278 ~~~p~Gh~~~--~lsg--~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~  327 (356)
T 2w18_A          278 YCLPPGQAGR--FLEG--DVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQ  327 (356)
T ss_dssp             ECCCTTCCCC--EEEE--EEETTEEEEEETTSCEEEEETTTCSEEEEECCC--C
T ss_pred             eeccCCCcce--eEcc--ccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCC
Confidence                 44322  2222  223778999999999999999999999999998653

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=6.4e-25  Score=191.63  Aligned_cols=241  Identities=12%  Similarity=0.108  Sum_probs=187.1

Q ss_pred             EEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEEC--CCCceeEEeeccc
Q 023772           25 RFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDV--STGRVIRKFRGHE  102 (277)
Q Consensus        25 ~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~--~~~~~~~~~~~h~  102 (277)
                      .|+|++.++++++.|++|++||..+++.+.++..+.. +..++|+|++++|++++.|++|++||+  .+++++.++.. .
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g  221 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-G  221 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-C
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-C
Confidence            3789999999999999999999999999999984433 899999999999999999999999999  88888888874 4


Q ss_pred             CceeEEEEec----CCCEEEEEeC-CCcEEEEeCccCCCcceEeecc----------ccC-cEEEEEecC--C-eEEEee
Q 023772          103 SEVNAVKFNE----YSSVVVSAGY-DQSLRAWDCRSHSTEPIQIIDS----------FQD-SVMSVCLTK--T-EIIGGS  163 (277)
Q Consensus       103 ~~v~~i~~~~----~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~----------~~~-~~~~~~~~~--~-~~~~g~  163 (277)
                      ..+..++|+|    +++++++++. +++|.+||..+...  +..+..          +.. .+..+.+++  . .+++..
T Consensus       222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~--~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~  299 (543)
T 1nir_A          222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP--KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK  299 (543)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE--EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc--ceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence            5678999999    9999998885 89999999876432  333321          112 456666654  2 366777


Q ss_pred             cCCcEEEEEccCCcccc---cCCCCCeeEEEEeCCCCEEEEEe-cCCeEEEEECCCCceEEEEec----cccceeeeeeE
Q 023772          164 VDGTVRTFDIRVGRELS---DDLGQPVNCISMSNDGNCILASC-LDSTLRLLDRSTGELLQEYKG----HICKSFKTDCC  235 (277)
Q Consensus       164 ~d~~i~i~d~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~----~~~~~~~~~~~  235 (277)
                      .++.|.+||+...+.+.   ...+..+..+.|+|+|+++++++ .+++|.+||..+++++..+..    |....  ... 
T Consensus       300 ~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g--~~~-  376 (543)
T 1nir_A          300 ETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRG--ANF-  376 (543)
T ss_dssp             TTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTC--EEE-
T ss_pred             CCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCC--ccc-
Confidence            88999999997654322   12345678899999999876654 688999999999999888764    32211  222 


Q ss_pred             ecCC-CceEEeec-CCCeEEEEECcC-------ccceeeeccCcce
Q 023772          236 LTNS-DAHVTGGS-EDGYIYFWDLVD-------ASVVAKFKAHSLV  272 (277)
Q Consensus       236 ~~~~-~~~l~sgs-~d~~i~iwd~~~-------~~~~~~~~~h~~~  272 (277)
                      ++|+ +..+++++ .|++|.+||+.+       .++++++++|...
T Consensus       377 ~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~  422 (543)
T 1nir_A          377 VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG  422 (543)
T ss_dssp             EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC
T ss_pred             CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCC
Confidence            4566 56667765 689999999998       8999999988643

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=6.5e-24  Score=179.71  Aligned_cols=224  Identities=12%  Similarity=0.066  Sum_probs=172.0

Q ss_pred             cccceeeccCCcEEEEEEeCCCCEEEEEeCCC---cEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEE-EEeCCCc-
Q 023772            9 TEANVLKGHEGAVLAARFNGDGNYCLSCGKDR---TIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLI-SCGGDRQ-   83 (277)
Q Consensus         9 ~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~---~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-t~s~d~~-   83 (277)
                      .....+.+|.+.|.+++|+|+|++|++++.|+   .|++||+.+++.. .+..|...+.+++|+|++++|+ +++.|+. 
T Consensus       169 ~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~  247 (415)
T 2hqs_A          169 YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSL  247 (415)
T ss_dssp             CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred             CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCc
Confidence            34566788999999999999999999999885   9999999988765 5667888999999999999887 6666655 


Q ss_pred             -EEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeC-CC--cEEEEeCccCCCcceEeeccccCcEEEEEecC--C
Q 023772           84 -IFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGY-DQ--SLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--T  157 (277)
Q Consensus        84 -v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~  157 (277)
                       |++||+.++++ ..+..|...+.++.|+|+++.|+.++. ++  .|.+||+.....   ..+..+...+..+.+++  .
T Consensus       248 ~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~---~~l~~~~~~~~~~~~spdG~  323 (415)
T 2hqs_A          248 NLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP---QRITWEGSQNQDADVSSDGK  323 (415)
T ss_dssp             EEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC---EECCCSSSEEEEEEECTTSS
T ss_pred             eEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE---EEEecCCCcccCeEECCCCC
Confidence             99999998876 567778889999999999998888876 45  577778765432   22233344565666655  4


Q ss_pred             eEEEeecC---CcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecCC---eEEEEECCCCceEEEEeccccceee
Q 023772          158 EIIGGSVD---GTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDS---TLRLLDRSTGELLQEYKGHICKSFK  231 (277)
Q Consensus       158 ~~~~g~~d---~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~---~i~~wd~~~~~~~~~~~~~~~~~~~  231 (277)
                      .++.++.+   ..|.+||+.+++.........+.+++|+|+|++|+.++.|+   .|++||+. +...+.+.++..  ..
T Consensus       324 ~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~--~v  400 (415)
T 2hqs_A          324 FMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDG--QV  400 (415)
T ss_dssp             EEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSS--EE
T ss_pred             EEEEEECcCCceEEEEEECCCCCEEEecCCCCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCC--CC
Confidence            57766654   58999999877653322223789999999999999988877   79999997 455667777643  34


Q ss_pred             eeeEecCCC
Q 023772          232 TDCCLTNSD  240 (277)
Q Consensus       232 ~~~~~~~~~  240 (277)
                      ..++++|..
T Consensus       401 ~~~~~~~~~  409 (415)
T 2hqs_A          401 KFPAWSPYL  409 (415)
T ss_dssp             EEEEECCCC
T ss_pred             cCCcccccc
Confidence            567788754

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.93  E-value=1e-22  Score=168.07  Aligned_cols=248  Identities=11%  Similarity=0.084  Sum_probs=188.1

Q ss_pred             cCCcEEEEEEeCCCCEEEEEeC-------CCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEE-EEeCCCcEEEEE
Q 023772           17 HEGAVLAARFNGDGNYCLSCGK-------DRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLI-SCGGDRQIFYWD   88 (277)
Q Consensus        17 H~~~V~~~~~~~~~~~l~s~s~-------d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-t~s~d~~v~~wd   88 (277)
                      ....+..++|+|+|++++.++.       ++.|.+||..+++.+..+... ..+..++|++++++++ +...++.|.+||
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d  117 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAID  117 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence            4466889999999999888774       568999999999888888653 4578899999999655 555679999999


Q ss_pred             CCCCceeEEeecccCc---------eeEEEEecCCCEEEEEe--CCCcEEEEeCccCCCcceEeeccccC--cEEEEEec
Q 023772           89 VSTGRVIRKFRGHESE---------VNAVKFNEYSSVVVSAG--YDQSLRAWDCRSHSTEPIQIIDSFQD--SVMSVCLT  155 (277)
Q Consensus        89 ~~~~~~~~~~~~h~~~---------v~~i~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~  155 (277)
                      .++++.+..+..+...         +.++.++|+++.++.++  .++.|.+||+.+...  ...+.....  ....+..+
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~s~d  195 (353)
T 3vgz_A          118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKL--KTAIQNTGKMSTGLALDSE  195 (353)
T ss_dssp             TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEE--EEEECCCCTTCCCCEEETT
T ss_pred             CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCce--EEEecCCCCccceEEECCC
Confidence            9999988887765432         68899999999777765  478899999876432  222321222  22344445


Q ss_pred             CCeEEEeecCCcEEEEEccCCcccccC------CCCCeeEEEEeCCCCEEEEEec-CCeEEEEECCCCceEEEEeccccc
Q 023772          156 KTEIIGGSVDGTVRTFDIRVGRELSDD------LGQPVNCISMSNDGNCILASCL-DSTLRLLDRSTGELLQEYKGHICK  228 (277)
Q Consensus       156 ~~~~~~g~~d~~i~i~d~~~~~~~~~~------~~~~v~~~~~s~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~~~~  228 (277)
                      +..++++..++.+.+||+.+++.....      ....+..++|+|+|+++++++. ++.|++||..+++.+..+....  
T Consensus       196 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--  273 (353)
T 3vgz_A          196 GKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--  273 (353)
T ss_dssp             TTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--
T ss_pred             CCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--
Confidence            667888888999999999887654321      2345788999999998777665 4899999999999888776432  


Q ss_pred             eeeeeeEecCCCceEE-eecCCCeEEEEECcCccceeeeccCcc
Q 023772          229 SFKTDCCLTNSDAHVT-GGSEDGYIYFWDLVDASVVAKFKAHSL  271 (277)
Q Consensus       229 ~~~~~~~~~~~~~~l~-sgs~d~~i~iwd~~~~~~~~~~~~h~~  271 (277)
                        ...++++|++++++ +...++.|.+||..+++.+..+..+..
T Consensus       274 --~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~  315 (353)
T 3vgz_A          274 --SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTH  315 (353)
T ss_dssp             --CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSE
T ss_pred             --CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCC
Confidence              23467899998554 555799999999999999888876543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.93  E-value=2.1e-23  Score=171.29  Aligned_cols=249  Identities=8%  Similarity=0.049  Sum_probs=172.7

Q ss_pred             eccCCcEEEEEEeCCCCEEEEEeCC-CcEEEEcCC--CCe--eEEEEeccCccEEEEEEcCCCCEEEEEeC-CCcEEEEE
Q 023772           15 KGHEGAVLAARFNGDGNYCLSCGKD-RTIRLWNPH--RGI--HIKTYKSHGREVRDVHVTADNSKLISCGG-DRQIFYWD   88 (277)
Q Consensus        15 ~~H~~~V~~~~~~~~~~~l~s~s~d-~~v~iwd~~--~~~--~~~~~~~h~~~v~~~~~~~~~~~l~t~s~-d~~v~~wd   88 (277)
                      ..|...+.+++|+|+|++|++++.+ +.+++|++.  +++  .+..+..+. .+..++|+|++++|++++. ++.|.+||
T Consensus        34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d  112 (343)
T 1ri6_A           34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTR  112 (343)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEE
Confidence            3577889999999999999988887 999999987  554  344555444 8899999999998876664 88999999


Q ss_pred             CC---CCceeEEeecccCceeEEEEecCCCEEEEEe-CCCcEEEEeCcc-CCCcceE--eec-cccCcEEEEEecC--Ce
Q 023772           89 VS---TGRVIRKFRGHESEVNAVKFNEYSSVVVSAG-YDQSLRAWDCRS-HSTEPIQ--IID-SFQDSVMSVCLTK--TE  158 (277)
Q Consensus        89 ~~---~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~-~d~~i~iwd~~~-~~~~~~~--~~~-~~~~~~~~~~~~~--~~  158 (277)
                      +.   ..+.+..+..+ ..+.++.|+|+++.+++++ .|+.|.+||+.. .......  ... .....+..+.+++  ..
T Consensus       113 ~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~  191 (343)
T 1ri6_A          113 LEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQY  191 (343)
T ss_dssp             EETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSE
T ss_pred             CCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCE
Confidence            94   44455555443 4578899999999888777 899999999875 3222111  111 1223455566654  44


Q ss_pred             EE-EeecCCcEEEEEccC--Ccc-----ccc---CC--CCCeeEEEEeCCCCEEEEE-ecCCeEEEEECC--C--CceEE
Q 023772          159 II-GGSVDGTVRTFDIRV--GRE-----LSD---DL--GQPVNCISMSNDGNCILAS-CLDSTLRLLDRS--T--GELLQ  220 (277)
Q Consensus       159 ~~-~g~~d~~i~i~d~~~--~~~-----~~~---~~--~~~v~~~~~s~~~~~l~~~-~~d~~i~~wd~~--~--~~~~~  220 (277)
                      ++ ++..++.+.+||+..  ++.     +..   ..  ...+..++|+|+|++|+++ ..++.|++||+.  +  .+.+.
T Consensus       192 l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~  271 (343)
T 1ri6_A          192 AYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEG  271 (343)
T ss_dssp             EEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEE
T ss_pred             EEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEee
Confidence            54 445789999999953  221     111   11  1246689999999988754 478999999997  3  33444


Q ss_pred             EEeccccceeeeeeEecCCCceEEeec-CCCeEEEEEC--cCcc--ceeeecc
Q 023772          221 EYKGHICKSFKTDCCLTNSDAHVTGGS-EDGYIYFWDL--VDAS--VVAKFKA  268 (277)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~sgs-~d~~i~iwd~--~~~~--~~~~~~~  268 (277)
                      .+..+.   ....++++|+++++++++ .|+.|++|++  .+++  .+..++.
T Consensus       272 ~~~~~~---~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~  321 (343)
T 1ri6_A          272 FQPTET---QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV  321 (343)
T ss_dssp             EEECSS---SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC
T ss_pred             eecCCC---ccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc
Confidence            444332   145678899999877766 6899999954  4553  3455554

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.93  E-value=2.1e-23  Score=182.08  Aligned_cols=241  Identities=14%  Similarity=0.096  Sum_probs=181.6

Q ss_pred             EEEEEEeCCCCEEEEEeCCCcEEEEcC--CCCeeEEEEeccCccEEEEEEcC----CCCEEEEEe-CCCcEEEEECCCCc
Q 023772           21 VLAARFNGDGNYCLSCGKDRTIRLWNP--HRGIHIKTYKSHGREVRDVHVTA----DNSKLISCG-GDRQIFYWDVSTGR   93 (277)
Q Consensus        21 V~~~~~~~~~~~l~s~s~d~~v~iwd~--~~~~~~~~~~~h~~~v~~~~~~~----~~~~l~t~s-~d~~v~~wd~~~~~   93 (277)
                      +..++|+|+|++|++++.|++|++||+  .+++.+.++.. ...+..++|+|    +++++++++ .+++|.+||..+++
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~  259 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE  259 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence            889999999999999999999999999  88888888874 55789999999    999999887 48999999999999


Q ss_pred             eeEEeec----------ccC-ceeEEEEecCCC-EEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec--CCeE
Q 023772           94 VIRKFRG----------HES-EVNAVKFNEYSS-VVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT--KTEI  159 (277)
Q Consensus        94 ~~~~~~~----------h~~-~v~~i~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  159 (277)
                      ++.++..          |.. .+.++.+++++. ++++...+++|.+||...........+. .......+.++  +..+
T Consensus       260 ~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l  338 (543)
T 1nir_A          260 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYF  338 (543)
T ss_dssp             EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEE
T ss_pred             cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEE
Confidence            8887764          323 788999999765 5667778999999998764332222222 22233344444  4555


Q ss_pred             EE-eecCCcEEEEEccCCcccccC------CCCCeeEEEEeCC-CCEEEEEe-cCCeEEEEECCC-------CceEEEEe
Q 023772          160 IG-GSVDGTVRTFDIRVGRELSDD------LGQPVNCISMSND-GNCILASC-LDSTLRLLDRST-------GELLQEYK  223 (277)
Q Consensus       160 ~~-g~~d~~i~i~d~~~~~~~~~~------~~~~v~~~~~s~~-~~~l~~~~-~d~~i~~wd~~~-------~~~~~~~~  223 (277)
                      ++ +..+++|.+||..+++.....      +......+ ++|+ +..+++++ .|++|.+||..+       .++++++.
T Consensus       339 ~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~  417 (543)
T 1nir_A          339 MTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ  417 (543)
T ss_dssp             EEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE
T ss_pred             EEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEE
Confidence            54 456899999999988654321      11112222 4777 55566665 689999999988       88999998


Q ss_pred             ccccceeeeeeEecCCCceEEeec-------CCCeEEEEECcCccce-eee
Q 023772          224 GHICKSFKTDCCLTNSDAHVTGGS-------EDGYIYFWDLVDASVV-AKF  266 (277)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~l~sgs-------~d~~i~iwd~~~~~~~-~~~  266 (277)
                      +|...  .....++|++++|++++       .+++|.+||+.+++.. +.+
T Consensus       418 ~~g~~--~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~  466 (543)
T 1nir_A          418 GQGGG--SLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVL  466 (543)
T ss_dssp             CSCSC--CCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEE
T ss_pred             cCCCC--ceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEe
Confidence            87533  34456899999999987       2779999999999887 443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.93  E-value=2.8e-24  Score=194.51  Aligned_cols=250  Identities=10%  Similarity=0.071  Sum_probs=186.8

Q ss_pred             CCcEEEEEEeCCCCEEEEEeC-CC-----cEEEEcCCCCeeEEEEeccCc------------------------cEEEEE
Q 023772           18 EGAVLAARFNGDGNYCLSCGK-DR-----TIRLWNPHRGIHIKTYKSHGR------------------------EVRDVH   67 (277)
Q Consensus        18 ~~~V~~~~~~~~~~~l~s~s~-d~-----~v~iwd~~~~~~~~~~~~h~~------------------------~v~~~~   67 (277)
                      ...|.+++|+|||++|++++. |+     .|++||+.+++....+..+..                        .+.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            457999999999999999998 88     999999999987777765433                        388999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCc--eeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccc
Q 023772           68 VTADNSKLISCGGDRQIFYWDVSTGR--VIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSF  145 (277)
Q Consensus        68 ~~~~~~~l~t~s~d~~v~~wd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  145 (277)
                      |+|++++|++++. +.|++||+.++.  ....+..|...+..+.|+|+++.|+.++ ++.|++||+.....  .......
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~--~~~~~~~  191 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ--MQLTADG  191 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE--EECCCCC
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE--EEeccCC
Confidence            9999999999886 899999999883  3455777888999999999999999887 56899999876432  1221111


Q ss_pred             cC------------------cEEEEEecCCeEEEeecCC---------------------------------cEEEEEcc
Q 023772          146 QD------------------SVMSVCLTKTEIIGGSVDG---------------------------------TVRTFDIR  174 (277)
Q Consensus       146 ~~------------------~~~~~~~~~~~~~~g~~d~---------------------------------~i~i~d~~  174 (277)
                      ..                  ....+.++++.++.++.|+                                 .|.+||+.
T Consensus       192 ~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~  271 (741)
T 2ecf_A          192 STTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPA  271 (741)
T ss_dssp             CSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSS
T ss_pred             ccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECC
Confidence            11                  1233444455688777665                                 78889988


Q ss_pred             C-CcccccC----CCCCeeEEEEeCCCCEEEEEec-----CCeEEEEECCCCceEEEEeccccce--eeeeeEecCCCce
Q 023772          175 V-GRELSDD----LGQPVNCISMSNDGNCILASCL-----DSTLRLLDRSTGELLQEYKGHICKS--FKTDCCLTNSDAH  242 (277)
Q Consensus       175 ~-~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~-----d~~i~~wd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  242 (277)
                      + ++.....    +...+..++| |+|++|+.++.     +..|++||+.+++....+..+...-  ......++|+|++
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~  350 (741)
T 2ecf_A          272 EQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSI  350 (741)
T ss_dssp             TTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCE
T ss_pred             CCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeE
Confidence            7 6543222    3356889999 99999987764     5689999999998877665543110  1235678999999


Q ss_pred             EEeecCCCeEEEEECc-CccceeeeccCccee
Q 023772          243 VTGGSEDGYIYFWDLV-DASVVAKFKAHSLVV  273 (277)
Q Consensus       243 l~sgs~d~~i~iwd~~-~~~~~~~~~~h~~~v  273 (277)
                      +++++.||.+++|.++ ++. ...+..|...|
T Consensus       351 ~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v  381 (741)
T 2ecf_A          351 LWSSERTGFQHLYRIDSKGK-AAALTHGNWSV  381 (741)
T ss_dssp             EEEECTTSSCEEEEECSSSC-EEESCCSSSCE
T ss_pred             EEEecCCCccEEEEEcCCCC-eeeeeecceEE
Confidence            9999999988888765 455 77777776544

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.93  E-value=7.1e-23  Score=167.76  Aligned_cols=247  Identities=9%  Similarity=0.121  Sum_probs=174.9

Q ss_pred             eeeccCCcEEEEEEeCCCCEEEEEeC-CCcEEEEcCCCCee-EEEEeccCccEEEEEEcCCCCEEEEEeCCC---cEEEE
Q 023772           13 VLKGHEGAVLAARFNGDGNYCLSCGK-DRTIRLWNPHRGIH-IKTYKSHGREVRDVHVTADNSKLISCGGDR---QIFYW   87 (277)
Q Consensus        13 ~l~~H~~~V~~~~~~~~~~~l~s~s~-d~~v~iwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~---~v~~w   87 (277)
                      .+..+..++ .++|+|+|++++.++. ++.|.+||..+++. ...+..+..+..+++|+|++++++++..++   .|.+|
T Consensus        35 ~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~  113 (331)
T 3u4y_A           35 QITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSY  113 (331)
T ss_dssp             EEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEE
T ss_pred             eEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEE
Confidence            334556666 9999999997776655 89999999999887 777777777766699999999999555553   89999


Q ss_pred             ECCCCceeEEeecccCceeEEEEecCCCEEE-EEeCCCc-EEEEeCccCCCcc---eEeeccccCcEEEEEecC--CeE-
Q 023772           88 DVSTGRVIRKFRGHESEVNAVKFNEYSSVVV-SAGYDQS-LRAWDCRSHSTEP---IQIIDSFQDSVMSVCLTK--TEI-  159 (277)
Q Consensus        88 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~-s~~~d~~-i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~-  159 (277)
                      |+++++.+..+..+ ....++.|+|+++.++ +...++. +.+|++.......   .... ........+.+++  +.+ 
T Consensus       114 d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~  191 (331)
T 3u4y_A          114 SFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI-SGGTRPFNITFTPDGNFAF  191 (331)
T ss_dssp             ETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE-CSSSSEEEEEECTTSSEEE
T ss_pred             ECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccc-cCCCCccceEECCCCCEEE
Confidence            99999988877654 4458899999998554 4456688 9999986432110   1111 1223345566654  434 


Q ss_pred             EEeecCCcEEEEEccCCcc---ccc-CCCCCeeEEEEeCCCCEEEEEe-cCCeEEEEECCCCce--EEEEecc----ccc
Q 023772          160 IGGSVDGTVRTFDIRVGRE---LSD-DLGQPVNCISMSNDGNCILASC-LDSTLRLLDRSTGEL--LQEYKGH----ICK  228 (277)
Q Consensus       160 ~~g~~d~~i~i~d~~~~~~---~~~-~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~wd~~~~~~--~~~~~~~----~~~  228 (277)
                      +++..++.|.+||+.+++.   +.. .....+..++|+|+|++++++. .++.|.+||..+++.  +..+..+    ...
T Consensus       192 v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  271 (331)
T 3u4y_A          192 VANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRP  271 (331)
T ss_dssp             EEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGG
T ss_pred             EEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCC
Confidence            4555689999999987765   332 2345678899999999776654 578899999998877  4444332    111


Q ss_pred             ee-eeeeEecCCCceEE-eecCCCeEEEEECcCccc
Q 023772          229 SF-KTDCCLTNSDAHVT-GGSEDGYIYFWDLVDASV  262 (277)
Q Consensus       229 ~~-~~~~~~~~~~~~l~-sgs~d~~i~iwd~~~~~~  262 (277)
                      .. ....+++|++++++ ++..++.|++||+.+...
T Consensus       272 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~  307 (331)
T 3u4y_A          272 LFGANQMALNKTETKLFISANISRELKVFTISGKVV  307 (331)
T ss_dssp             GTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred             cccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence            10 12247899999875 455677999999987543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.93  E-value=7.3e-24  Score=173.61  Aligned_cols=240  Identities=9%  Similarity=0.055  Sum_probs=177.9

Q ss_pred             cEEEEEEeCCCCEEE-EEeCCCcEEEEcCCCCeeEEEEecc-----CccEEEEEEcCCCCEEEEEe------------CC
Q 023772           20 AVLAARFNGDGNYCL-SCGKDRTIRLWNPHRGIHIKTYKSH-----GREVRDVHVTADNSKLISCG------------GD   81 (277)
Q Consensus        20 ~V~~~~~~~~~~~l~-s~s~d~~v~iwd~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~t~s------------~d   81 (277)
                      .+..++|+|+|++++ +++.++.|.+||+.+++.+..+...     ...+..++|+|+++++++++            .+
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence            478899999998664 6667899999999999887776532     22677899999999998886            57


Q ss_pred             CcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeecccc--CcEEEEEecCCeE
Q 023772           82 RQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQ--DSVMSVCLTKTEI  159 (277)
Q Consensus        82 ~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  159 (277)
                      +.|.+||+++++.+..+.. ...+..+.|+|+++.++.+  ++.|.+||+.+...  ...+....  ... .+.+++..+
T Consensus       115 ~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~--~~~~~~~~~~~~~-~~s~dg~~l  188 (337)
T 1pby_B          115 TRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTL--VEDKPIQSWEAET-YAQPDVLAV  188 (337)
T ss_dssp             CEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEE--EEEECSTTTTTTT-BCCCBCCCC
T ss_pred             ceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcE--eeeeeccccCCCc-eeCCCccEE
Confidence            9999999999988877764 4567789999999988877  68999999876432  22221111  111 222333333


Q ss_pred             EEee-cCC-----------------------cEEEEEccCCcccc---cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEE
Q 023772          160 IGGS-VDG-----------------------TVRTFDIRVGRELS---DDLGQPVNCISMSNDGNCILASCLDSTLRLLD  212 (277)
Q Consensus       160 ~~g~-~d~-----------------------~i~i~d~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd  212 (277)
                      +..+ .++                       .|.+||+.+++...   ......+.+++|+|+|++++++  ++.|++||
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d  266 (337)
T 1pby_B          189 WNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFD  266 (337)
T ss_dssp             CCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEE
T ss_pred             eeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEE
Confidence            2222 122                       47889998775431   1223467889999999998887  78999999


Q ss_pred             CCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCc
Q 023772          213 RSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHS  270 (277)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~  270 (277)
                      +.+++.+..+....   ....++++|+++++++++.|+.|++||+.+++.+..++.+.
T Consensus       267 ~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~  321 (337)
T 1pby_B          267 LEKNASIKRVPLPH---SYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPG  321 (337)
T ss_dssp             TTTTEEEEEEECSS---CCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred             CCCCcCcceecCCC---ceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence            99998887776432   23456789999998888899999999999999999988653

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.93  E-value=1.7e-23  Score=172.36  Aligned_cols=239  Identities=9%  Similarity=0.019  Sum_probs=176.6

Q ss_pred             EEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccC-ccEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceeEEeec
Q 023772           23 AARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG-REVRDVHVTADNSKLI-SCGGDRQIFYWDVSTGRVIRKFRG  100 (277)
Q Consensus        23 ~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~-t~s~d~~v~~wd~~~~~~~~~~~~  100 (277)
                      .+++++++.++++++.+++|++||..+++.+..+..+. ..+..++|+|++++++ ++..++.|.+||+++++.+..+..
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            35677888999999999999999999999888887543 2578999999998665 556789999999999988777653


Q ss_pred             cc------CceeEEEEecCCCEEEEEeCC------------CcEEEEeCccCCCcc-eEeeccccCcEEEEEecCCe-EE
Q 023772          101 HE------SEVNAVKFNEYSSVVVSAGYD------------QSLRAWDCRSHSTEP-IQIIDSFQDSVMSVCLTKTE-II  160 (277)
Q Consensus       101 h~------~~v~~i~~~~~~~~l~s~~~d------------~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~  160 (277)
                      +.      ..+..+.++|+++++++++.+            +.|.+||+.+..... ..... ....+..+.++++. ++
T Consensus        84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~l~  162 (349)
T 1jmx_B           84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGSLY  162 (349)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSCEE
T ss_pred             ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCcEE
Confidence            32      237789999999999998866            999999987633211 12222 22234444444322 55


Q ss_pred             EeecCCcEEEEEccCCccccc---CC------------------------------------------------------
Q 023772          161 GGSVDGTVRTFDIRVGRELSD---DL------------------------------------------------------  183 (277)
Q Consensus       161 ~g~~d~~i~i~d~~~~~~~~~---~~------------------------------------------------------  183 (277)
                      +++  +.|.+||+.+++....   ..                                                      
T Consensus       163 ~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  240 (349)
T 1jmx_B          163 VAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL  240 (349)
T ss_dssp             EES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred             Ecc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEec
Confidence            543  4499999877653211   10                                                      


Q ss_pred             -------------CCCeeEEEEeC-CCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCC
Q 023772          184 -------------GQPVNCISMSN-DGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSED  249 (277)
Q Consensus       184 -------------~~~v~~~~~s~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d  249 (277)
                                   +..+..++|+| ++++++++  ++.|++||+.+++.+..+....   ....+++++++++|++++.+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~  315 (349)
T 1jmx_B          241 KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDH---TYYCVAFDKKGDKLYLGGTF  315 (349)
T ss_dssp             TTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSS---CCCEEEECSSSSCEEEESBS
T ss_pred             cCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCC---CccceEECCCCCEEEEecCC
Confidence                         01345677889 99988887  8899999999998887775432   13456789999988888889


Q ss_pred             CeEEEEECcCccceeeeccC
Q 023772          250 GYIYFWDLVDASVVAKFKAH  269 (277)
Q Consensus       250 ~~i~iwd~~~~~~~~~~~~h  269 (277)
                      +.|++||..+++.++.++.+
T Consensus       316 ~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          316 NDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             SEEEEEETTTTEEEEEEECS
T ss_pred             CeEEEEeccccceeeeeecC
Confidence            99999999999999888755

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.93  E-value=2.5e-23  Score=167.00  Aligned_cols=233  Identities=10%  Similarity=-0.001  Sum_probs=168.6

Q ss_pred             EEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeEEeecc-cCceeEEEEec
Q 023772           35 SCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVST-GRVIRKFRGH-ESEVNAVKFNE  112 (277)
Q Consensus        35 s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~-~~~~~~~~~h-~~~v~~i~~~~  112 (277)
                      +++.|++|++||+.+++.. .+..|...+.+++|+|++++|++++ ++.|++||+++ ++.......+ ...+.++.|+|
T Consensus        17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp   94 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP   94 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred             CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence            4578999999999988765 4556888999999999999999887 78999999999 8877666665 46788999999


Q ss_pred             CCCEEEEEe--CCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEE-EeecCCcEEEEEccC--Cccc-ccCCC
Q 023772          113 YSSVVVSAG--YDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEII-GGSVDGTVRTFDIRV--GREL-SDDLG  184 (277)
Q Consensus       113 ~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~g~~d~~i~i~d~~~--~~~~-~~~~~  184 (277)
                      +++.+++++  .++..++|......... ..+... ..+..+.+++  ..++ ++..++.+++|++..  ++.. .....
T Consensus        95 dg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  172 (297)
T 2ojh_A           95 DGALYAISDKVEFGKSAIYLLPSTGGTP-RLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGE  172 (297)
T ss_dssp             TSSEEEEEECTTTSSCEEEEEETTCCCC-EECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSS
T ss_pred             CCCEEEEEEeCCCCcceEEEEECCCCce-EEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCC
Confidence            999999998  44566666654322222 222222 2355556654  4455 778899999998643  2221 12344


Q ss_pred             CCeeEEEEeCCCCEEEEEe-cCCeEEEEECC-CCceEEEEeccccceeeeeeEecCCCceEEeecCC-----------Ce
Q 023772          185 QPVNCISMSNDGNCILASC-LDSTLRLLDRS-TGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSED-----------GY  251 (277)
Q Consensus       185 ~~v~~~~~s~~~~~l~~~~-~d~~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d-----------~~  251 (277)
                      ..+.+++|+|+|++|+.++ .++.+++|++. .+..+..+..+.  .....+.++|++++|+.++.+           +.
T Consensus       173 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~  250 (297)
T 2ojh_A          173 GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSA--YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVR  250 (297)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCS--EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEE
T ss_pred             CccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCC--cccCCeEECCCCCEEEEEEcCCCCCcccccCceE
Confidence            6789999999999888766 58899999885 455566666553  334556789999998887765           57


Q ss_pred             EEEEECcCccce--eeeccCccee
Q 023772          252 IYFWDLVDASVV--AKFKAHSLVV  273 (277)
Q Consensus       252 i~iwd~~~~~~~--~~~~~h~~~v  273 (277)
                      |++||+.+++..  ..+.+|...+
T Consensus       251 l~~~d~~~~~~~~~~~~~~~~~~~  274 (297)
T 2ojh_A          251 VQLMDMDGGNVETLFDLFGGQGTM  274 (297)
T ss_dssp             EEEEETTSCSCEEEEEEEESTTTS
T ss_pred             EEEEecCCCCceeeeccCCCCccc
Confidence            999999988764  3444665444

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.92  E-value=2e-23  Score=167.57  Aligned_cols=236  Identities=11%  Similarity=0.004  Sum_probs=170.2

Q ss_pred             cccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCC-CeeEEEEecc-CccEEEEEEcCCCCEEEEEe--CCCcE
Q 023772            9 TEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHR-GIHIKTYKSH-GREVRDVHVTADNSKLISCG--GDRQI   84 (277)
Q Consensus         9 ~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~~h-~~~v~~~~~~~~~~~l~t~s--~d~~v   84 (277)
                      .+...+..|.+.|.+++|+|+|++|++++ ++.|++||+.+ ++.......| ...+.+++|+|++++|++++  .++..
T Consensus        32 ~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  110 (297)
T 2ojh_A           32 RKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKS  110 (297)
T ss_dssp             TEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSC
T ss_pred             CceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcc
Confidence            33445678999999999999999999977 78999999998 8777666665 36789999999999999998  33455


Q ss_pred             EEEE--CCCCceeEEeecccCceeEEEEecCCCEEE-EEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC--eE
Q 023772           85 FYWD--VSTGRVIRKFRGHESEVNAVKFNEYSSVVV-SAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--EI  159 (277)
Q Consensus        85 ~~wd--~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  159 (277)
                      ++|.  +.+++ ...+..+ ..+..+.|+|+++.++ +++.|+.+++|++..... ....+..+...+..+.++++  .+
T Consensus       111 ~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~l  187 (297)
T 2ojh_A          111 AIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG-VETRLTHGEGRNDGPDYSPDGRWI  187 (297)
T ss_dssp             EEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC-CEEECCCSSSCEEEEEECTTSSEE
T ss_pred             eEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCC-cceEcccCCCccccceECCCCCEE
Confidence            5554  45544 3444433 3488899999999877 788899999999754322 23334445566777777654  46


Q ss_pred             EEee-cCCcEEEEEcc-CCccccc--CCCCCeeEEEEeCCCCEEEEEecC-----------CeEEEEECCCCceEE--EE
Q 023772          160 IGGS-VDGTVRTFDIR-VGRELSD--DLGQPVNCISMSNDGNCILASCLD-----------STLRLLDRSTGELLQ--EY  222 (277)
Q Consensus       160 ~~g~-~d~~i~i~d~~-~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d-----------~~i~~wd~~~~~~~~--~~  222 (277)
                      +.++ .++.+++|++. .+.....  .....+.+++|+|+|++|++++.+           +.|++||+.+++...  .+
T Consensus       188 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~  267 (297)
T 2ojh_A          188 YFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDL  267 (297)
T ss_dssp             EEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEE
T ss_pred             EEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeecc
Confidence            6554 58999999986 3332222  233568889999999999888766           569999998876543  33


Q ss_pred             eccccceeeeeeEecCCCceEEeecCCC
Q 023772          223 KGHICKSFKTDCCLTNSDAHVTGGSEDG  250 (277)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~l~sgs~d~  250 (277)
                      .+|..  ....++++|++++|++++.|.
T Consensus       268 ~~~~~--~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          268 FGGQG--TMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EESTT--TSCSCCBCTTSSEEEEEEECC
T ss_pred             CCCCc--ccccceECCCCCEEEEEEecc
Confidence            34432  234467899999888776553

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.92  E-value=4.2e-22  Score=164.43  Aligned_cols=246  Identities=12%  Similarity=0.135  Sum_probs=166.9

Q ss_pred             eccCCcEEEEEEeCCCCEEEEEeC---CCcEEEEcCCCCe--eEEEEeccCccEEEEEEcCCCCEEEEEe-CCCcEEEEE
Q 023772           15 KGHEGAVLAARFNGDGNYCLSCGK---DRTIRLWNPHRGI--HIKTYKSHGREVRDVHVTADNSKLISCG-GDRQIFYWD   88 (277)
Q Consensus        15 ~~H~~~V~~~~~~~~~~~l~s~s~---d~~v~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~t~s-~d~~v~~wd   88 (277)
                      ..+...+..++|+|+|+ |++++.   ++.|++|++.+++  .+..+..+...+..++|+|++++|++++ .++.+.+|+
T Consensus        36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~  114 (347)
T 3hfq_A           36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK  114 (347)
T ss_dssp             EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence            34566778899999999 565544   6999999997765  3445556778899999999999988887 689999999


Q ss_pred             CCC-Cc--eeEEeec---------ccCceeEEEEecCCCEEEEEeCCCcEEEEeCcc-CCCcceEeecc-ccCcEEEEEe
Q 023772           89 VST-GR--VIRKFRG---------HESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRS-HSTEPIQIIDS-FQDSVMSVCL  154 (277)
Q Consensus        89 ~~~-~~--~~~~~~~---------h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~-~~~~~~~~~~  154 (277)
                      +.. +.  .+..+..         +...+.+++++|+++++++...++.|.+|++.. ........... .......+.+
T Consensus       115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~  194 (347)
T 3hfq_A          115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVF  194 (347)
T ss_dssp             ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEE
T ss_pred             eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEE
Confidence            963 32  2333321         123478899999999777777789999999872 22211111111 1223444555


Q ss_pred             cC--CeEE-EeecCCcEEEEEccC--Ccc-----cccCC-----CCCeeEEEEeCCCCEE-EEEecCCeEEEEECCCC--
Q 023772          155 TK--TEII-GGSVDGTVRTFDIRV--GRE-----LSDDL-----GQPVNCISMSNDGNCI-LASCLDSTLRLLDRSTG--  216 (277)
Q Consensus       155 ~~--~~~~-~g~~d~~i~i~d~~~--~~~-----~~~~~-----~~~v~~~~~s~~~~~l-~~~~~d~~i~~wd~~~~--  216 (277)
                      ++  +.++ +...++.+.+|++..  ++.     +....     ...+..++|+|+|++| ++...++.|++||+...  
T Consensus       195 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~  274 (347)
T 3hfq_A          195 SPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH  274 (347)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC
T ss_pred             CCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc
Confidence            54  4444 456788999999874  321     11111     1347889999999987 45566899999999732  


Q ss_pred             -ceEEEEeccccceeeeeeEecCCCceEEeec-CCCeEEEE--ECcCccce
Q 023772          217 -ELLQEYKGHICKSFKTDCCLTNSDAHVTGGS-EDGYIYFW--DLVDASVV  263 (277)
Q Consensus       217 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs-~d~~i~iw--d~~~~~~~  263 (277)
                       +.+..+..+.  .....++++|++++|++++ .++.|.+|  |..++++.
T Consensus       275 ~~~~~~~~~~~--~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          275 LTLIQQISTEG--DFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             EEEEEEEECSS--SCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             EEEeEEEecCC--CCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence             3444444332  2245677899999887765 45899999  55667665

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.91  E-value=7e-22  Score=161.82  Aligned_cols=232  Identities=13%  Similarity=0.168  Sum_probs=169.9

Q ss_pred             EEEeCCCCE-EEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCce-eEEeec
Q 023772           24 ARFNGDGNY-CLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGG-DRQIFYWDVSTGRV-IRKFRG  100 (277)
Q Consensus        24 ~~~~~~~~~-l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~-d~~v~~wd~~~~~~-~~~~~~  100 (277)
                      ..|.+++.+ +++++.++.|++||..+++....+..+...+ .++|+|+++++++++. ++.|.+||+++++. ...+..
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~   81 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE   81 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence            345665554 6688999999999999999888888776777 9999999997766655 89999999999987 777777


Q ss_pred             ccCceeEEEEecCCCEEEEEeCCC---cEEEEeCccCCCcceEeeccccCcEEEEEecCC--eEE-EeecCCc-EEEEEc
Q 023772          101 HESEVNAVKFNEYSSVVVSAGYDQ---SLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--EII-GGSVDGT-VRTFDI  173 (277)
Q Consensus       101 h~~~v~~i~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~g~~d~~-i~i~d~  173 (277)
                      +..+..+++++|++++++++..++   .|.+||+.....  ...+.. ......+.++++  .++ +...++. +.+|++
T Consensus        82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~--~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~  158 (331)
T 3u4y_A           82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKF--ISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKI  158 (331)
T ss_dssp             CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEE--EEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEE
T ss_pred             CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCe--EEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEE
Confidence            777776699999999998555553   899999876432  222222 233456666654  454 4455688 999998


Q ss_pred             cCCccc------ccCCCCCeeEEEEeCCCCEEEEE-ecCCeEEEEECCCCce---EEEEeccccceeeeeeEecCCCceE
Q 023772          174 RVGREL------SDDLGQPVNCISMSNDGNCILAS-CLDSTLRLLDRSTGEL---LQEYKGHICKSFKTDCCLTNSDAHV  243 (277)
Q Consensus       174 ~~~~~~------~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l  243 (277)
                      .....+      .......+..++|+|+|++++.+ ..++.|++||+.+++.   +..+...   .....++++|+++++
T Consensus       159 ~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~---~~~~~~~~spdg~~l  235 (331)
T 3u4y_A          159 DADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN---NLPGTIVVSRDGSTV  235 (331)
T ss_dssp             CTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS---SCCCCEEECTTSSEE
T ss_pred             CCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC---CCCceEEECCCCCEE
Confidence            643221      11234568899999999966554 4688999999999887   6666643   233556789999976


Q ss_pred             Ee-ecCCCeEEEEECcCccc
Q 023772          244 TG-GSEDGYIYFWDLVDASV  262 (277)
Q Consensus       244 ~s-gs~d~~i~iwd~~~~~~  262 (277)
                      +. ...++.|.+||..++++
T Consensus       236 ~v~~~~~~~i~~~d~~~~~~  255 (331)
T 3u4y_A          236 YVLTESTVDVFNFNQLSGTL  255 (331)
T ss_dssp             EEECSSEEEEEEEETTTTEE
T ss_pred             EEEEcCCCEEEEEECCCCce
Confidence            54 44688899999999887

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=3.3e-23  Score=186.91  Aligned_cols=245  Identities=8%  Similarity=0.069  Sum_probs=173.5

Q ss_pred             CcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCc---cEEEEEEcCCCCEEEEEeCC---------CcEEE
Q 023772           19 GAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGR---EVRDVHVTADNSKLISCGGD---------RQIFY   86 (277)
Q Consensus        19 ~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~---~v~~~~~~~~~~~l~t~s~d---------~~v~~   86 (277)
                      ..+.+++|+|||+++++ +.|++|++||+.+++....+..|..   .|.+++|+|++++|++++.+         +.+.+
T Consensus        17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~   95 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL   95 (723)
T ss_dssp             CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred             ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence            34678999999998776 7899999999999988888877765   49999999999999999875         77889


Q ss_pred             EECCCCceeEEee---cccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCc---------------
Q 023772           87 WDVSTGRVIRKFR---GHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDS---------------  148 (277)
Q Consensus        87 wd~~~~~~~~~~~---~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---------------  148 (277)
                      ||+++++. ..+.   .|...+..++|+|+++.|+.++. +.|++||+.....  ..........               
T Consensus        96 ~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~--~~~~~~~~~~~~~~g~~~~v~~ee~  171 (723)
T 1xfd_A           96 SKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA--IRVVSTGKEGVIYNGLSDWLYEEEI  171 (723)
T ss_dssp             EESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC--EEEECCCBTTTEEEEECCHHHHHTT
T ss_pred             EECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce--EEEecCCCCCceECcccceeEEEEe
Confidence            99998876 3333   44555888999999999999876 7899999876533  2222221111               


Q ss_pred             ---EEEEEec--CCeEEEeecCC----------------------------------cEEEEEccCCccccc--CC----
Q 023772          149 ---VMSVCLT--KTEIIGGSVDG----------------------------------TVRTFDIRVGRELSD--DL----  183 (277)
Q Consensus       149 ---~~~~~~~--~~~~~~g~~d~----------------------------------~i~i~d~~~~~~~~~--~~----  183 (277)
                         +..+.++  ++.++.++.|+                                  .|++||+.+++....  ..    
T Consensus       172 ~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~  251 (723)
T 1xfd_A          172 LKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPR  251 (723)
T ss_dssp             SSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGG
T ss_pred             ccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCC
Confidence               1345554  45677766543                                  789999987753211  11    


Q ss_pred             --CCCeeEEEEeCCCCEEEEEec----CCeEEEEECCCCceEEEEeccc-ccee--eeeeEecCCCceEEe--ecCCC--
Q 023772          184 --GQPVNCISMSNDGNCILASCL----DSTLRLLDRSTGELLQEYKGHI-CKSF--KTDCCLTNSDAHVTG--GSEDG--  250 (277)
Q Consensus       184 --~~~v~~~~~s~~~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~l~s--gs~d~--  250 (277)
                        ...+..++|+|||++|++.+.    +..|++||+.++++...+..+. ....  .....++|+|+.++.  +..|+  
T Consensus       252 ~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  331 (723)
T 1xfd_A          252 MREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGR  331 (723)
T ss_dssp             GSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSS
T ss_pred             CccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCC
Confidence              346788999999998877653    3579999999988776554331 1111  125678999997764  45677  


Q ss_pred             ----eEEEEE-CcCcc--ceeeecc
Q 023772          251 ----YIYFWD-LVDAS--VVAKFKA  268 (277)
Q Consensus       251 ----~i~iwd-~~~~~--~~~~~~~  268 (277)
                          .|++|| ...++  +...+..
T Consensus       332 ~~~~~l~~~d~~~~~~~~~~~~l~~  356 (723)
T 1xfd_A          332 GKFYHITVSSSQPNSSNDNIQSITS  356 (723)
T ss_dssp             SCEEEEEEECSSCCSSSCCCCBSCC
T ss_pred             cceeEEEEEeccCCCCccceeEeec
Confidence                577777 34444  1555553

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.90  E-value=4.1e-21  Score=158.41  Aligned_cols=228  Identities=9%  Similarity=0.083  Sum_probs=169.2

Q ss_pred             CcEEEEEEeCCCCEEE-EEeCCCcEEEEcCCCCeeEEEEeccCcc---------EEEEEEcCCCCEEEEEe--CCCcEEE
Q 023772           19 GAVLAARFNGDGNYCL-SCGKDRTIRLWNPHRGIHIKTYKSHGRE---------VRDVHVTADNSKLISCG--GDRQIFY   86 (277)
Q Consensus        19 ~~V~~~~~~~~~~~l~-s~s~d~~v~iwd~~~~~~~~~~~~h~~~---------v~~~~~~~~~~~l~t~s--~d~~v~~   86 (277)
                      ..+..+.|+++|++++ +...++.|.+||..+++.+..+..+...         +.++.|+|++++++.++  .++.|.+
T Consensus        89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~  168 (353)
T 3vgz_A           89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWV  168 (353)
T ss_dssp             SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEE
T ss_pred             CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEE
Confidence            4467899999999555 5566899999999999988888765432         78999999999877765  4789999


Q ss_pred             EECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeec--cccCcEEEEEec--CCeEEEe
Q 023772           87 WDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIID--SFQDSVMSVCLT--KTEIIGG  162 (277)
Q Consensus        87 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~g  162 (277)
                      ||+++++.+..+..+...+..+.++|+++.++.++.++.+.+||+.+..........  ........+.++  +..++.+
T Consensus       169 ~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  248 (353)
T 3vgz_A          169 VDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFIT  248 (353)
T ss_dssp             EETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEE
T ss_pred             EcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEE
Confidence            999999998888766667888999999999999999999999998765332221111  122334445554  5555555


Q ss_pred             e-cCCcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEe-cCCeEEEEECCCCceEEEEeccccceeeeeeEecCCC
Q 023772          163 S-VDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASC-LDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSD  240 (277)
Q Consensus       163 ~-~d~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (277)
                      . .++.|.+||+.+++.+..........++|+|+|++++++. .++.|.+||..+++.+..+....   ....++++|++
T Consensus       249 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg  325 (353)
T 3vgz_A          249 DSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT---HPNSLALSADG  325 (353)
T ss_dssp             ESSSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS---EEEEEEECTTS
T ss_pred             eCCCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC---CCCeEEEcCCC
Confidence            4 4589999999887654332222235699999999766555 68999999999999888776542   34556789999


Q ss_pred             ceEEeecCC
Q 023772          241 AHVTGGSED  249 (277)
Q Consensus       241 ~~l~sgs~d  249 (277)
                      ++++.+..+
T Consensus       326 ~~l~v~~~~  334 (353)
T 3vgz_A          326 KTLYVSVKQ  334 (353)
T ss_dssp             CEEEEEEEC
T ss_pred             CEEEEEEcc
Confidence            876665544

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.90  E-value=8.9e-22  Score=173.53  Aligned_cols=237  Identities=11%  Similarity=0.036  Sum_probs=166.0

Q ss_pred             cCCcEEEEEEeCCCCEEEEEeC-CCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeC---CCcEEEEECCC-
Q 023772           17 HEGAVLAARFNGDGNYCLSCGK-DRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGG---DRQIFYWDVST-   91 (277)
Q Consensus        17 H~~~V~~~~~~~~~~~l~s~s~-d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~---d~~v~~wd~~~-   91 (277)
                      +..+|.+++|+|||++|++++. |++++||++..++..+....+...+.++.|+|+ +.+++++.   +...++|.+.. 
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred             hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence            4678999999999999999887 999999998766654444333368999999999 77777765   45556655432 


Q ss_pred             --CceeEEeecccCceeEEEEecCCC-EEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecC---
Q 023772           92 --GRVIRKFRGHESEVNAVKFNEYSS-VVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVD---  165 (277)
Q Consensus        92 --~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d---  165 (277)
                        +... .+.... .+...+|+|+++ .+++.+.++.+.+||+.+.....  ... .......++++++.++.++.+   
T Consensus        99 ~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~--l~~-~~~~~~~~spDG~~la~~~~~~~~  173 (582)
T 3o4h_A           99 RPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRE--LAR-LPGFGFVSDIRGDLIAGLGFFGGG  173 (582)
T ss_dssp             STTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEE--EEE-ESSCEEEEEEETTEEEEEEEEETT
T ss_pred             CCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEE--eec-CCCceEEECCCCCEEEEEEEcCCC
Confidence              2222 333222 334567888775 33344445556699987653322  222 222445566778888877766   


Q ss_pred             -CcEEEEEccCCcccc-cCCCCCeeEEEEeCCCCEEEEEecCC--eEEEEECCCCceEEEEeccccceeeeeeE------
Q 023772          166 -GTVRTFDIRVGRELS-DDLGQPVNCISMSNDGNCILASCLDS--TLRLLDRSTGELLQEYKGHICKSFKTDCC------  235 (277)
Q Consensus       166 -~~i~i~d~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~------  235 (277)
                       +.|++||+.+++... ......+..++|||||++|+++..++  .|++||+.+++.. .+.++....  ....      
T Consensus       174 ~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~--~~~~~~~~~~  250 (582)
T 3o4h_A          174 RVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDF--SSYRPTAITW  250 (582)
T ss_dssp             EEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHH--HHHCCSEEEE
T ss_pred             CeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcCh--hhhhhccccc
Confidence             779999988765432 23445689999999999999888888  8999999988877 555553221  1223      


Q ss_pred             --ecCCCceEEeecCCCeEEEEECcCcccee
Q 023772          236 --LTNSDAHVTGGSEDGYIYFWDLVDASVVA  264 (277)
Q Consensus       236 --~~~~~~~l~sgs~d~~i~iwd~~~~~~~~  264 (277)
                        ++|||.++++++.|+.+++|++  ++.+.
T Consensus       251 ~~~spdg~~~~~~~~~g~~~l~~~--g~~~~  279 (582)
T 3o4h_A          251 LGYLPDGRLAVVARREGRSAVFID--GERVE  279 (582)
T ss_dssp             EEECTTSCEEEEEEETTEEEEEET--TEEEC
T ss_pred             eeEcCCCcEEEEEEcCCcEEEEEE--CCeec
Confidence              8999988899999999999999  66554

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.90  E-value=7.1e-21  Score=156.15  Aligned_cols=235  Identities=11%  Similarity=0.154  Sum_probs=158.0

Q ss_pred             EEEEEeCCCcEEEEcCC-CC--eeEEEEeccCccEEEEEEcCCCCEEEEEeCC-CcEEEEECC--CCc--eeEEeecccC
Q 023772           32 YCLSCGKDRTIRLWNPH-RG--IHIKTYKSHGREVRDVHVTADNSKLISCGGD-RQIFYWDVS--TGR--VIRKFRGHES  103 (277)
Q Consensus        32 ~l~s~s~d~~v~iwd~~-~~--~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d-~~v~~wd~~--~~~--~~~~~~~h~~  103 (277)
                      ++++++.|+.|++||+. ++  +.+..+ .|...+.+++|+|++++|++++.+ +.|++|++.  +++  .+..+..+. 
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-   84 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-   84 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-
Confidence            34455889999999985 33  233333 467789999999999999888876 999999997  554  344555444 


Q ss_pred             ceeEEEEecCCCEEEEEeC-CCcEEEEeCccCC-CcceEeeccccCcEEEEEec--CCeEEEee-cCCcEEEEEccC-Cc
Q 023772          104 EVNAVKFNEYSSVVVSAGY-DQSLRAWDCRSHS-TEPIQIIDSFQDSVMSVCLT--KTEIIGGS-VDGTVRTFDIRV-GR  177 (277)
Q Consensus       104 ~v~~i~~~~~~~~l~s~~~-d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~g~-~d~~i~i~d~~~-~~  177 (277)
                      .+..++|+|+++.++.++. ++.|.+||+.... ......... ...+..+.++  +..+++++ .++.|.+||+.. ++
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~  163 (343)
T 1ri6_A           85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH  163 (343)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred             CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCc
Confidence            7788999999998766664 8899999984211 112222222 2224444444  44566666 889999999986 43


Q ss_pred             cc-------ccCCCCCeeEEEEeCCCCEEEEEe-cCCeEEEEECCC--Cce--EEEEec----cccceeeeeeEecCCCc
Q 023772          178 EL-------SDDLGQPVNCISMSNDGNCILASC-LDSTLRLLDRST--GEL--LQEYKG----HICKSFKTDCCLTNSDA  241 (277)
Q Consensus       178 ~~-------~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~wd~~~--~~~--~~~~~~----~~~~~~~~~~~~~~~~~  241 (277)
                      ..       ....+..+..++|+|+++++++++ .++.+++||+..  ++.  ...+..    +........++++|+++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~  243 (343)
T 1ri6_A          164 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGR  243 (343)
T ss_dssp             EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSS
T ss_pred             eeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCC
Confidence            21       112345788999999999776554 789999999953  433  222221    11112334577899998


Q ss_pred             eEE-eecCCCeEEEEECc----CccceeeeccC
Q 023772          242 HVT-GGSEDGYIYFWDLV----DASVVAKFKAH  269 (277)
Q Consensus       242 ~l~-sgs~d~~i~iwd~~----~~~~~~~~~~h  269 (277)
                      +++ ++..|+.|++||+.    +.+.+..+..+
T Consensus       244 ~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~  276 (343)
T 1ri6_A          244 HLYACDRTASLITVFSVSEDGSVLSKEGFQPTE  276 (343)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCCEEEEEEEECS
T ss_pred             EEEEEecCCCEEEEEEEcCCCCceEEeeeecCC
Confidence            776 56689999999998    33455555443

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.89  E-value=9.1e-21  Score=161.19  Aligned_cols=158  Identities=14%  Similarity=0.044  Sum_probs=126.3

Q ss_pred             ccCCcEEEEEEeCCCCEEE----EEeCCCcEEEEcCCCC--------e---eEEEEeccCccEEEEEEcCC-CCEEEEEe
Q 023772           16 GHEGAVLAARFNGDGNYCL----SCGKDRTIRLWNPHRG--------I---HIKTYKSHGREVRDVHVTAD-NSKLISCG   79 (277)
Q Consensus        16 ~H~~~V~~~~~~~~~~~l~----s~s~d~~v~iwd~~~~--------~---~~~~~~~h~~~v~~~~~~~~-~~~l~t~s   79 (277)
                      .|.++|.+++|+++|++|+    +|+.|++|+|||+.++        +   ....+.+|...|.+++|+|+ +.+|++++
T Consensus        90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s  169 (434)
T 2oit_A           90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL  169 (434)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred             cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence            4677899999999999999    8999999999997654        1   24556779999999999998 78999999


Q ss_pred             CCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeecc-------ccCcEEEE
Q 023772           80 GDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDS-------FQDSVMSV  152 (277)
Q Consensus        80 ~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~  152 (277)
                      .|++|++||++++..+....+|...|.+++|+|++++|++|+.||+|++||.+ ...  ...+..       +...+.++
T Consensus       170 ~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~--~~~~~~~~~~~~~~~~~v~~v  246 (434)
T 2oit_A          170 ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQE--KKVIPCPPFYESDHPVRVLDV  246 (434)
T ss_dssp             TTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCE--EEEECCCTTCCTTSCEEEEEE
T ss_pred             CCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccc--cccccCCcccCCCCceeEEEE
Confidence            99999999999987777777899999999999999999999999999999987 221  111211       22367788


Q ss_pred             EecCCe-EE--EeecCC------cEEEEEccCC
Q 023772          153 CLTKTE-II--GGSVDG------TVRTFDIRVG  176 (277)
Q Consensus       153 ~~~~~~-~~--~g~~d~------~i~i~d~~~~  176 (277)
                      .+.++. ++  ....||      .+++||++..
T Consensus       247 ~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          247 LWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             EEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            887654 22  233443      3889999864

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.89  E-value=7.3e-21  Score=178.22  Aligned_cols=251  Identities=12%  Similarity=0.113  Sum_probs=188.3

Q ss_pred             ceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCC-CeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772           12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHR-GIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~   90 (277)
                      ..+.+|.+.+.++.|+++ .++++++.|++++||.... +.....+..|. .+...+|+|++++|+.+. ++.|.+||++
T Consensus       197 ~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~  273 (1045)
T 1k32_A          197 KKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPD  273 (1045)
T ss_dssp             EEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTT
T ss_pred             EECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCC
Confidence            445789999999999988 6777888999999997643 33445555554 466789999999998874 8999999995


Q ss_pred             CCceeEEeec-----------ccCceeEEEEe-cCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccC-cEEEEEec-C
Q 023772           91 TGRVIRKFRG-----------HESEVNAVKFN-EYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQD-SVMSVCLT-K  156 (277)
Q Consensus        91 ~~~~~~~~~~-----------h~~~v~~i~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~-~  156 (277)
                      ..+. ..+..           |...+.++.|+ |+++.+++++ ++.+.+|+.....   ...+..+.. .+..+.++ +
T Consensus       274 ~~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~sdg  348 (1045)
T 1k32_A          274 TEKI-EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY---VLKVPEPLRIRYVRRGGDTK  348 (1045)
T ss_dssp             TCCE-EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB---EEECSCCSCEEEEEECSSSE
T ss_pred             ceEe-eeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc---eEEccCCCcceEEeeeEcCC
Confidence            4443 35444           44578999999 9999998887 7899999986542   222333444 56666666 2


Q ss_pred             CeEEEeecCCcEE-EEEccCCccccc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeee
Q 023772          157 TEIIGGSVDGTVR-TFDIRVGRELSD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDC  234 (277)
Q Consensus       157 ~~~~~g~~d~~i~-i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  234 (277)
                      ..++.++.+..+. +||+..++.... .+...+..++|+|+|++|++++.++.|++||+.+++......+|...  ...+
T Consensus       349 ~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~--v~~~  426 (1045)
T 1k32_A          349 VAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAM--ITDF  426 (1045)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSC--CCCE
T ss_pred             CeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCC--ccce
Confidence            3477777777888 889876543221 34467899999999999999999999999999999887776666432  3456


Q ss_pred             EecCCCceEEeecCCC----------eEEEEECcCccceeeeccCccee
Q 023772          235 CLTNSDAHVTGGSEDG----------YIYFWDLVDASVVAKFKAHSLVV  273 (277)
Q Consensus       235 ~~~~~~~~l~sgs~d~----------~i~iwd~~~~~~~~~~~~h~~~v  273 (277)
                      +++|+|++|++++.++          .|++||+.+++ +..+..|...+
T Consensus       427 ~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~  474 (1045)
T 1k32_A          427 TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHD  474 (1045)
T ss_dssp             EECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBE
T ss_pred             EECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCccc
Confidence            7899999998876654          89999999887 66677665433

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.89  E-value=8.9e-22  Score=178.10  Aligned_cols=244  Identities=9%  Similarity=0.046  Sum_probs=173.4

Q ss_pred             cEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCe--eEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE
Q 023772           20 AVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI--HIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRK   97 (277)
Q Consensus        20 ~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~   97 (277)
                      .|.+++|+|||++|++++. +.|++||+.++.  ....+..|...+..++|+|++++|+.++ ++.|++||+.+++..+.
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~  187 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQL  187 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEEC
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEe
Confidence            3789999999999999887 999999998872  3445667788899999999999999887 46899999998876654


Q ss_pred             eecccCc----------------eeEEEEecCCCEEEEEeCCC---------------------------------cEEE
Q 023772           98 FRGHESE----------------VNAVKFNEYSSVVVSAGYDQ---------------------------------SLRA  128 (277)
Q Consensus        98 ~~~h~~~----------------v~~i~~~~~~~~l~s~~~d~---------------------------------~i~i  128 (277)
                      ...+...                +.++.|+||++.|++++.|+                                 .|.+
T Consensus       188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~  267 (741)
T 2ecf_A          188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGV  267 (741)
T ss_dssp             CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEE
T ss_pred             ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEE
Confidence            4444332                47799999999999998776                                 7888


Q ss_pred             EeCcc-CCCcceEeeccccCcEEEEE-ecCCeEEEeec-----CCcEEEEEccCCccccc--CCC-C---CeeEEEEeCC
Q 023772          129 WDCRS-HSTEPIQIIDSFQDSVMSVC-LTKTEIIGGSV-----DGTVRTFDIRVGRELSD--DLG-Q---PVNCISMSND  195 (277)
Q Consensus       129 wd~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~-----d~~i~i~d~~~~~~~~~--~~~-~---~v~~~~~s~~  195 (277)
                      ||+.+ .....+.....+...+..+. .+++.++.+..     +..|.+||+.+++....  ... .   .+..++|+|+
T Consensus       268 ~d~~~~~~~~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spd  347 (741)
T 2ecf_A          268 ISPAEQAQTQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDD  347 (741)
T ss_dssp             ECSSTTCCCEEECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTT
T ss_pred             EECCCCCceEEecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCC
Confidence            99876 54322211112334444444 45556765543     56799999987754322  111 1   4568899999


Q ss_pred             CCEEEEEecCCeEEEEECC-CCceEEEEeccccceeeeee-EecCCCceEE-eecCCC--eEEEEECcC-ccceeeecc
Q 023772          196 GNCILASCLDSTLRLLDRS-TGELLQEYKGHICKSFKTDC-CLTNSDAHVT-GGSEDG--YIYFWDLVD-ASVVAKFKA  268 (277)
Q Consensus       196 ~~~l~~~~~d~~i~~wd~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~-sgs~d~--~i~iwd~~~-~~~~~~~~~  268 (277)
                      |+++++++.|+..+||.+. .++ ...+..+...  .... .++|+++.++ +++.|+  .+++|++.. +.....+..
T Consensus       348 g~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~--v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~  423 (741)
T 2ecf_A          348 GSILWSSERTGFQHLYRIDSKGK-AAALTHGNWS--VDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK  423 (741)
T ss_dssp             SCEEEEECTTSSCEEEEECSSSC-EEESCCSSSC--EEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC
T ss_pred             CeEEEEecCCCccEEEEEcCCCC-eeeeeecceE--EEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc
Confidence            9988899999988888764 344 6666655322  2233 5899998764 566666  899999874 555555554

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.89  E-value=2.8e-21  Score=173.98  Aligned_cols=247  Identities=10%  Similarity=0.085  Sum_probs=171.9

Q ss_pred             ccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCC-----CeeEEEEeccCcc--------------EEEEEEcC
Q 023772           10 EANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHR-----GIHIKTYKSHGRE--------------VRDVHVTA   70 (277)
Q Consensus        10 ~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~-----~~~~~~~~~h~~~--------------v~~~~~~~   70 (277)
                      +...+..|.+.+.+++|+|||++|+++ .|+.|++||+.+     ++.......+...              +.++.|+|
T Consensus       112 ~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp  190 (706)
T 2z3z_A          112 KVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP  190 (706)
T ss_dssp             EEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT
T ss_pred             ceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC
Confidence            344456677889999999999999984 689999999988     7765544443332              48999999


Q ss_pred             CCCEEEEEe---------------------------------CCCcEEEEECCCCceeEEee--cccCceeEEEEecCCC
Q 023772           71 DNSKLISCG---------------------------------GDRQIFYWDVSTGRVIRKFR--GHESEVNAVKFNEYSS  115 (277)
Q Consensus        71 ~~~~l~t~s---------------------------------~d~~v~~wd~~~~~~~~~~~--~h~~~v~~i~~~~~~~  115 (277)
                      ++++|++++                                 .+..|++||+++++......  .|...+..+.|+|+++
T Consensus       191 Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~  270 (706)
T 2z3z_A          191 KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDEN  270 (706)
T ss_dssp             TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSS
T ss_pred             CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCC
Confidence            999999987                                 45789999999887654332  4677899999999999


Q ss_pred             EEEEEeCCC-----cEEEEeCccCCCcceEeeccccC---cEE--EEEe--cCCeEEEeecCCcEEEEEcc-CCccccc-
Q 023772          116 VVVSAGYDQ-----SLRAWDCRSHSTEPIQIIDSFQD---SVM--SVCL--TKTEIIGGSVDGTVRTFDIR-VGRELSD-  181 (277)
Q Consensus       116 ~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~---~~~--~~~~--~~~~~~~g~~d~~i~i~d~~-~~~~~~~-  181 (277)
                      .+++++.|+     .|++||+.+..............   .+.  .+..  ++..++++..|+.+++|++. .+..+.. 
T Consensus       271 ~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l  350 (706)
T 2z3z_A          271 ILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQV  350 (706)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEEC
T ss_pred             EEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEec
Confidence            999988776     89999987652111111111111   112  3333  44457788889999999876 3333222 


Q ss_pred             -CCCCCeeE-EEEeCCCCEEEEEecC-C----eEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCC----C
Q 023772          182 -DLGQPVNC-ISMSNDGNCILASCLD-S----TLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSED----G  250 (277)
Q Consensus       182 -~~~~~v~~-~~~s~~~~~l~~~~~d-~----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d----~  250 (277)
                       .....+.. ++|+|+|+.|+.++.+ +    .|+.||..+++. ..+. +..  ....++++|++++++..+.+    +
T Consensus       351 ~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~l~-~~~--~~~~~~~spdg~~l~~~~~~~~~p~  426 (706)
T 2z3z_A          351 TKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT-KDLT-PES--GMHRTQLSPDGSAIIDIFQSPTVPR  426 (706)
T ss_dssp             CCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC-EESC-CSS--SEEEEEECTTSSEEEEEEECSSCSC
T ss_pred             CCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc-eecc-CCC--ceEEEEECCCCCEEEEEecCCCCCc
Confidence             22345665 7999999988665544 3    677778877653 3333 222  23456889999988765333    5


Q ss_pred             eEEEEECcCcc
Q 023772          251 YIYFWDLVDAS  261 (277)
Q Consensus       251 ~i~iwd~~~~~  261 (277)
                      .|++||+.+++
T Consensus       427 ~i~l~d~~~~~  437 (706)
T 2z3z_A          427 KVTVTNIGKGS  437 (706)
T ss_dssp             EEEEEESSSCE
T ss_pred             EEEEEECCCCe
Confidence            79999999886

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.88  E-value=4.7e-21  Score=156.85  Aligned_cols=231  Identities=11%  Similarity=0.106  Sum_probs=162.7

Q ss_pred             CEEEEEeCCCcEEEEcCCCCeeEEEEeccCc--cEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEEeecc-----c
Q 023772           31 NYCLSCGKDRTIRLWNPHRGIHIKTYKSHGR--EVRDVHVTADNSKL-ISCGGDRQIFYWDVSTGRVIRKFRGH-----E  102 (277)
Q Consensus        31 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l-~t~s~d~~v~~wd~~~~~~~~~~~~h-----~  102 (277)
                      +++++++.++.|++||..+++.+..+.....  .+..++|+|+++++ ++++.++.|.+||+.+++.+..+...     .
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            4789999999999999999988888764332  58899999999876 55566889999999999887766532     2


Q ss_pred             CceeEEEEecCCCEEEEEe------------CCCcEEEEeCccCCCcceEeeccccCcEEEEEec--CCeEEEeecCCcE
Q 023772          103 SEVNAVKFNEYSSVVVSAG------------YDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT--KTEIIGGSVDGTV  168 (277)
Q Consensus       103 ~~v~~i~~~~~~~~l~s~~------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~d~~i  168 (277)
                      ..+..+.++|+++.++.++            .++.|.+||+.+...  ...+.. ...+..+.++  +..++++  ++.|
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~--~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i  156 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR--RKAFEA-PRQITMLAWARDGSKLYGL--GRDL  156 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE--EEEEEC-CSSCCCEEECTTSSCEEEE--SSSE
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcE--EEEEeC-CCCcceeEECCCCCEEEEe--CCeE
Confidence            2567899999999988886            579999999875432  222221 2223334444  4556666  6899


Q ss_pred             EEEEccCCcccccC-CCCCeeEEEEeCCCCEEEEEecCC------------------------eEEEEECCCCceEEEEe
Q 023772          169 RTFDIRVGRELSDD-LGQPVNCISMSNDGNCILASCLDS------------------------TLRLLDRSTGELLQEYK  223 (277)
Q Consensus       169 ~i~d~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~------------------------~i~~wd~~~~~~~~~~~  223 (277)
                      .+||+.+++..... .......+.|+|++.+++.++.++                        .|.+||..+++.. .+.
T Consensus       157 ~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~  235 (337)
T 1pby_B          157 HVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MRE  235 (337)
T ss_dssp             EEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEE
T ss_pred             EEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-Eee
Confidence            99999887654221 111111237889988765544332                        4689999988775 322


Q ss_pred             ccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccC
Q 023772          224 GHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAH  269 (277)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h  269 (277)
                      ..........++++|++++++++  ++.|++||+.+++.+..+..+
T Consensus       236 ~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~  279 (337)
T 1pby_B          236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP  279 (337)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS
T ss_pred             cCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC
Confidence            21112233456789999998887  799999999999888877644

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.88  E-value=1.6e-21  Score=165.77  Aligned_cols=196  Identities=14%  Similarity=0.099  Sum_probs=145.9

Q ss_pred             CCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC----------eeEE-----EEeccCccEEEEEEcCCCCEEE----EE
Q 023772           18 EGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG----------IHIK-----TYKSHGREVRDVHVTADNSKLI----SC   78 (277)
Q Consensus        18 ~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~----------~~~~-----~~~~h~~~v~~~~~~~~~~~l~----t~   78 (277)
                      ...++.+++++++.++++++.|+ +++|+....          ..+.     ....+...|.+++|+|++++|+    ++
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence            34578899999999999999988 899863210          0111     1123566899999999999999    88


Q ss_pred             eCCCcEEEEECCCC--------ce---eEEeecccCceeEEEEecC-CCEEEEEeCCCcEEEEeCccCCCcceEeecccc
Q 023772           79 GGDRQIFYWDVSTG--------RV---IRKFRGHESEVNAVKFNEY-SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQ  146 (277)
Q Consensus        79 s~d~~v~~wd~~~~--------~~---~~~~~~h~~~v~~i~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  146 (277)
                      +.|++|++||++++        +.   +..+.+|...|.+++|+|+ ++++++++.||+|++||++...  .......+.
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~--~~~~~~~~~  192 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV--KVCATLPST  192 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE--EEEEEECGG
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc--ceeeccCCC
Confidence            99999999998754        22   4556679999999999998 7899999999999999998652  233334466


Q ss_pred             CcEEEEEecC--CeEEEeecCCcEEEEEccCCcc--cccC------CCCCeeEEEEeCCCCEEEEE-ecCC------eEE
Q 023772          147 DSVMSVCLTK--TEIIGGSVDGTVRTFDIRVGRE--LSDD------LGQPVNCISMSNDGNCILAS-CLDS------TLR  209 (277)
Q Consensus       147 ~~~~~~~~~~--~~~~~g~~d~~i~i~d~~~~~~--~~~~------~~~~v~~~~~s~~~~~l~~~-~~d~------~i~  209 (277)
                      ..+.++.+++  +.+++|+.||+|++||++....  +...      +...+.+++|++++.++++. ..||      .++
T Consensus       193 ~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~  272 (434)
T 2oit_A          193 VAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVV  272 (434)
T ss_dssp             GCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEE
T ss_pred             CceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceE
Confidence            7788888875  4599999999999999982211  1111      11278899999988776553 3443      389


Q ss_pred             EEECCCC
Q 023772          210 LLDRSTG  216 (277)
Q Consensus       210 ~wd~~~~  216 (277)
                      +|+++..
T Consensus       273 i~~l~~~  279 (434)
T 2oit_A          273 MALLPKK  279 (434)
T ss_dssp             EEECCCT
T ss_pred             EEEeccC
Confidence            9999754

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.88  E-value=6.3e-21  Score=171.67  Aligned_cols=243  Identities=12%  Similarity=0.094  Sum_probs=168.5

Q ss_pred             EEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeE-EEEeccC-----------------ccEEEEEEcCCCCEEEEEeCCC
Q 023772           21 VLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHI-KTYKSHG-----------------REVRDVHVTADNSKLISCGGDR   82 (277)
Q Consensus        21 V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~-~~~~~h~-----------------~~v~~~~~~~~~~~l~t~s~d~   82 (277)
                      +..+.|.  |+.+++++.|+ | +||+.+++.+ ..+..|.                 ..|.+++|+|+ ++++.+ .++
T Consensus        28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~  101 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQG  101 (706)
T ss_dssp             CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETT
T ss_pred             CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECC
Confidence            4457777  66777888888 8 9999998773 3333332                 46999999999 666655 459


Q ss_pred             cEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCcc-----CCCcceEeeccccCc---------
Q 023772           83 QIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRS-----HSTEPIQIIDSFQDS---------  148 (277)
Q Consensus        83 ~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~~~~~~~---------  148 (277)
                      .+++||+.+++... +..+...+.+++|+|+++.|+++ .|+.|++||+.+     ...  ..........         
T Consensus       102 ~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~--~~~~~~~~~~~~~g~~~~~  177 (706)
T 2z3z_A          102 GLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRA--IAVTIDGTETLVYGQAVHQ  177 (706)
T ss_dssp             EEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCC--EESCSCCBTTEEESSCCGG
T ss_pred             EEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCc--EEeccCCCCCeEcccchhh
Confidence            99999999887654 44567788899999999999985 789999999976     432  2222221121         


Q ss_pred             -----EEEEEe--cCCeEEEee---------------------------------cCCcEEEEEccCCccccc----CCC
Q 023772          149 -----VMSVCL--TKTEIIGGS---------------------------------VDGTVRTFDIRVGRELSD----DLG  184 (277)
Q Consensus       149 -----~~~~~~--~~~~~~~g~---------------------------------~d~~i~i~d~~~~~~~~~----~~~  184 (277)
                           +..+.+  +++.++.++                                 .+..|.+||+.+++....    ...
T Consensus       178 ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~  257 (706)
T 2z3z_A          178 REFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKE  257 (706)
T ss_dssp             GCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTT
T ss_pred             hhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCc
Confidence                 233444  455677776                                 346799999987764322    233


Q ss_pred             CCeeEEEEeCCCCEEEEEecCC-----eEEEEECCCCceEEEEeccccce---eeeeeEecC--CCceEEeecCCCeEEE
Q 023772          185 QPVNCISMSNDGNCILASCLDS-----TLRLLDRSTGELLQEYKGHICKS---FKTDCCLTN--SDAHVTGGSEDGYIYF  254 (277)
Q Consensus       185 ~~v~~~~~s~~~~~l~~~~~d~-----~i~~wd~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~l~sgs~d~~i~i  254 (277)
                      ..+.+++|+|+|++|++++.|+     .|++||..+++....+.......   ....+.++|  +++++++++.|+.+++
T Consensus       258 ~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l  337 (706)
T 2z3z_A          258 KFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHL  337 (706)
T ss_dssp             CEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEE
T ss_pred             eeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEE
Confidence            5688999999999999988776     89999999884443332211111   123457899  9999999999999999


Q ss_pred             EECc-CccceeeeccCccee
Q 023772          255 WDLV-DASVVAKFKAHSLVV  273 (277)
Q Consensus       255 wd~~-~~~~~~~~~~h~~~v  273 (277)
                      |+++ ++..+..+..|...+
T Consensus       338 ~~~~~~~~~~~~l~~~~~~v  357 (706)
T 2z3z_A          338 YLYDTTGRLIRQVTKGEWEV  357 (706)
T ss_dssp             EEEETTSCEEEECCCSSSCE
T ss_pred             EEEECCCCEEEecCCCCeEE
Confidence            9887 677778888776544

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.88  E-value=2.4e-19  Score=148.72  Aligned_cols=245  Identities=11%  Similarity=0.101  Sum_probs=162.5

Q ss_pred             cCCcEEEEEEeCCCCEEEEEeCC----CcEEEEcCCC--Cee--EEEEeccCccEEEEEEcCCCCEEEEEe-CCCcEEEE
Q 023772           17 HEGAVLAARFNGDGNYCLSCGKD----RTIRLWNPHR--GIH--IKTYKSHGREVRDVHVTADNSKLISCG-GDRQIFYW   87 (277)
Q Consensus        17 H~~~V~~~~~~~~~~~l~s~s~d----~~v~iwd~~~--~~~--~~~~~~h~~~v~~~~~~~~~~~l~t~s-~d~~v~~w   87 (277)
                      |...+..++|+|+|++|++++.+    +.+++|++..  ++.  +.....+......+++  ++++|++++ .++.+.+|
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence            66777889999999999999886    8999998754  443  3344445556777777  777777766 68899999


Q ss_pred             ECCCCceeEEe---ec-----------ccCceeEEEEecCCCEEEEEe-CCCcEEEEeCccCCC----c-c------eEe
Q 023772           88 DVSTGRVIRKF---RG-----------HESEVNAVKFNEYSSVVVSAG-YDQSLRAWDCRSHST----E-P------IQI  141 (277)
Q Consensus        88 d~~~~~~~~~~---~~-----------h~~~v~~i~~~~~~~~l~s~~-~d~~i~iwd~~~~~~----~-~------~~~  141 (277)
                      ++.....+...   ..           +...+.++.|+|++++++.++ .++.|.+|++.....    + .      ...
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~  205 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF  205 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred             EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence            99754322211   11           123357899999999665544 589999998865432    1 0      111


Q ss_pred             eccccCcEEEEEecCC--eEEEee-cCCcEEEEEccCCcc--c---cc--CCCCCeeEEEEeCCCCEEEEEec--CCeEE
Q 023772          142 IDSFQDSVMSVCLTKT--EIIGGS-VDGTVRTFDIRVGRE--L---SD--DLGQPVNCISMSNDGNCILASCL--DSTLR  209 (277)
Q Consensus       142 ~~~~~~~~~~~~~~~~--~~~~g~-~d~~i~i~d~~~~~~--~---~~--~~~~~v~~~~~s~~~~~l~~~~~--d~~i~  209 (277)
                      ..........+.++++  .++++. .++.|.+||+..++.  +   ..  ........++|+|+|++|+++..  ++.|.
T Consensus       206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~  285 (361)
T 3scy_A          206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA  285 (361)
T ss_dssp             ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred             ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence            1122333455666554  465555 689999999986532  1   11  11234679999999999877665  48999


Q ss_pred             EEECC--CCc--eEEEEeccccceeeeeeEecCCCceEEeec-CCCeEEEE--ECcCccceeee
Q 023772          210 LLDRS--TGE--LLQEYKGHICKSFKTDCCLTNSDAHVTGGS-EDGYIYFW--DLVDASVVAKF  266 (277)
Q Consensus       210 ~wd~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs-~d~~i~iw--d~~~~~~~~~~  266 (277)
                      +|++.  +++  .+..+..   ......++++|++++|++++ .++.|.+|  |..++++....
T Consensus       286 v~~~~~~~g~~~~~~~~~~---g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~  346 (361)
T 3scy_A          286 IFKVDETNGTLTKVGYQLT---GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIK  346 (361)
T ss_dssp             EEEECTTTCCEEEEEEEEC---SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECS
T ss_pred             EEEEcCCCCcEEEeeEecC---CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecc
Confidence            99985  444  3333332   12345578899999887765 77999996  55577665443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.87  E-value=1.4e-18  Score=139.38  Aligned_cols=239  Identities=13%  Similarity=0.204  Sum_probs=171.8

Q ss_pred             ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEec------cCccEEEEEEc-CCCCEEEEEeC-CCcEEEE
Q 023772           16 GHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKS------HGREVRDVHVT-ADNSKLISCGG-DRQIFYW   87 (277)
Q Consensus        16 ~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~------h~~~v~~~~~~-~~~~~l~t~s~-d~~v~~w   87 (277)
                      +|.....+++++++|+++++...++.|++||.. ++.+..+..      +...+..+++. +++..+++... ++.|.+|
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            456778999999999998898889999999977 566666642      33568899994 66666666533 8899999


Q ss_pred             ECCCCceeEEeec-ccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeec--cccCcEEEEEecCC--eEEEe
Q 023772           88 DVSTGRVIRKFRG-HESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIID--SFQDSVMSVCLTKT--EIIGG  162 (277)
Q Consensus        88 d~~~~~~~~~~~~-h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~g  162 (277)
                      | .+++.+..+.. +...+.++++.++++++++...++.|.+||....   ....+.  .....+..+.++++  .+++.
T Consensus       106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~---~~~~~~~~~~~~~p~~i~~~~~g~l~v~~  181 (286)
T 1q7f_A          106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN---VLHKFGCSKHLEFPNGVVVNDKQEIFISD  181 (286)
T ss_dssp             C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC---EEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred             C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC---EEEEeCCCCccCCcEEEEECCCCCEEEEE
Confidence            9 56676666643 3457889999999998888888899999996432   222221  22234566666653  35555


Q ss_pred             ecCCcEEEEEccCCccccc--CC--CCCeeEEEEeCCCCEEEEEecCC-eEEEEECCCCceEEEEeccccceeeeeeEec
Q 023772          163 SVDGTVRTFDIRVGRELSD--DL--GQPVNCISMSNDGNCILASCLDS-TLRLLDRSTGELLQEYKGHICKSFKTDCCLT  237 (277)
Q Consensus       163 ~~d~~i~i~d~~~~~~~~~--~~--~~~v~~~~~s~~~~~l~~~~~d~-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  237 (277)
                      ..++.|++||.... .+..  ..  ...+..++++++|+++++...++ .|++||. +++.+..+..+........++++
T Consensus       182 ~~~~~i~~~~~~g~-~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~  259 (286)
T 1q7f_A          182 NRAHCVKVFNYEGQ-YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALM  259 (286)
T ss_dssp             GGGTEEEEEETTCC-EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEE
T ss_pred             CCCCEEEEEcCCCC-EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEEC
Confidence            67899999997533 2211  11  14688999999999888887776 9999996 46777777655333334556788


Q ss_pred             CCCceEEeecCCCeEEEEECcCccc
Q 023772          238 NSDAHVTGGSEDGYIYFWDLVDASV  262 (277)
Q Consensus       238 ~~~~~l~sgs~d~~i~iwd~~~~~~  262 (277)
                      +++.++++ +.|+.|++|+......
T Consensus       260 ~~g~l~vs-~~~~~v~v~~~~~~~p  283 (286)
T 1q7f_A          260 DDGSVVLA-SKDYRLYIYRYVQLAP  283 (286)
T ss_dssp             TTTEEEEE-ETTTEEEEEECSCCCC
T ss_pred             CCCcEEEE-CCCCeEEEEEcccccc
Confidence            99987777 5699999999876543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.86  E-value=2e-19  Score=168.52  Aligned_cols=238  Identities=11%  Similarity=0.011  Sum_probs=179.6

Q ss_pred             ceeeccCC-cEEEEEEeCCCCEEEEEeCCCcEE-EEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 023772           12 NVLKGHEG-AVLAARFNGDGNYCLSCGKDRTIR-LWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDV   89 (277)
Q Consensus        12 ~~l~~H~~-~V~~~~~~~~~~~l~s~s~d~~v~-iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~   89 (277)
                      ..+..|.+ .+..+.|+ +|+.+++++.+..+. +||..+++.. .+..|...+..++|+|++++|++++.++.|++||+
T Consensus       330 ~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~  407 (1045)
T 1k32_A          330 LKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDL  407 (1045)
T ss_dssp             EECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             EEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEEC
Confidence            34567777 89999999 999999999988888 9998877644 34478889999999999999999999999999999


Q ss_pred             CCCceeEEeecccCceeEEEEecCCCEEEEEeCCC----------cEEEEeCccCCCcceEeeccccCcEEEEEecC--C
Q 023772           90 STGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQ----------SLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--T  157 (277)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~  157 (277)
                      ++++.......|...+.+++|+|+++++++++.++          .|++||+....   ...+..+...+..+.+++  .
T Consensus       408 ~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~---~~~l~~~~~~~~~~~~spdG~  484 (1045)
T 1k32_A          408 ETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK---IFAATTENSHDYAPAFDADSK  484 (1045)
T ss_dssp             TTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE---EEECSCSSSBEEEEEECTTSC
T ss_pred             CCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc---EEEeeCCCcccCCceEcCCCC
Confidence            99998877778999999999999999998887754          89999987542   333444555555666654  5


Q ss_pred             eEEEeecCCcEEEEEccCCcc-------------------------------------------c-c-cCCCCCeeEEEE
Q 023772          158 EIIGGSVDGTVRTFDIRVGRE-------------------------------------------L-S-DDLGQPVNCISM  192 (277)
Q Consensus       158 ~~~~g~~d~~i~i~d~~~~~~-------------------------------------------~-~-~~~~~~v~~~~~  192 (277)
                      .++.++.++....|+......                                           + . ......+..+++
T Consensus       485 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~  564 (1045)
T 1k32_A          485 NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIP  564 (1045)
T ss_dssp             EEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEE
T ss_pred             EEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEE
Confidence            577777766655555321100                                           0 0 012245788999


Q ss_pred             eCCCCEEEE-------------EecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcC
Q 023772          193 SNDGNCILA-------------SCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVD  259 (277)
Q Consensus       193 s~~~~~l~~-------------~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~  259 (277)
                      +|+|.++++             ...+..|++||+.+++.. .+.     .......++|||++|++++.| .|++||+.+
T Consensus       565 s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~-----~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~  637 (1045)
T 1k32_A          565 LESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT-EVK-----NNLTDLRLSADRKTVMVRKDD-GKIYTFPLE  637 (1045)
T ss_dssp             CSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE-EEE-----EEEEEEEECTTSCEEEEEETT-SCEEEEESS
T ss_pred             cCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEE-Eee-----cCcceEEECCCCCEEEEEcCC-cEEEEeCcc
Confidence            999987775             123457889999888753 332     123445789999999998876 799999998


Q ss_pred             cc
Q 023772          260 AS  261 (277)
Q Consensus       260 ~~  261 (277)
                      ++
T Consensus       638 ~~  639 (1045)
T 1k32_A          638 KP  639 (1045)
T ss_dssp             CT
T ss_pred             Cc
Confidence            86

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.86  E-value=1.7e-19  Score=149.99  Aligned_cols=240  Identities=12%  Similarity=0.106  Sum_probs=161.7

Q ss_pred             CCcEEEEEEeCCCCEEEEEeCCCcEEEEcCC-CCeeEEEEecc-CccEEEEEEcCCCCE--EEEEe-------------C
Q 023772           18 EGAVLAARFNGDGNYCLSCGKDRTIRLWNPH-RGIHIKTYKSH-GREVRDVHVTADNSK--LISCG-------------G   80 (277)
Q Consensus        18 ~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~-~~~~~~~~~~h-~~~v~~~~~~~~~~~--l~t~s-------------~   80 (277)
                      ...+..++|+|+|++|++++.+ .+++|++. +++........ .+.+..++|+|++++  +++++             .
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~  117 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence            3467789999999999999988 99999987 77665433211 123556899999984  45553             6


Q ss_pred             CCcEEEEECC-CCceeEEee----cccCceeEEEEecCCCEEEEEe-CCCcEEEEeCc-cCCCcceEeec--cccCcEEE
Q 023772           81 DRQIFYWDVS-TGRVIRKFR----GHESEVNAVKFNEYSSVVVSAG-YDQSLRAWDCR-SHSTEPIQIID--SFQDSVMS  151 (277)
Q Consensus        81 d~~v~~wd~~-~~~~~~~~~----~h~~~v~~i~~~~~~~~l~s~~-~d~~i~iwd~~-~~~~~~~~~~~--~~~~~~~~  151 (277)
                      ++++.+|++. +++....+.    .+...+.++.|+|++++++++. .++.|++|++. +..........  .+......
T Consensus       118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~  197 (365)
T 1jof_A          118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW  197 (365)
T ss_dssp             CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred             CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCE
Confidence            8999999997 466544333    2456789999999999887765 46899999987 44322222222  11344566


Q ss_pred             EEecCC--eEEEee-cCCcEEEEEcc--CCcc------cccCC----C-C-------CeeEEE-EeCCCCEEEEEecC-C
Q 023772          152 VCLTKT--EIIGGS-VDGTVRTFDIR--VGRE------LSDDL----G-Q-------PVNCIS-MSNDGNCILASCLD-S  206 (277)
Q Consensus       152 ~~~~~~--~~~~g~-~d~~i~i~d~~--~~~~------~~~~~----~-~-------~v~~~~-~s~~~~~l~~~~~d-~  206 (277)
                      +.++++  .++++. .++.+.+|++.  +++.      +....    + .       .+..++ |+|+|++|+++..+ +
T Consensus       198 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~  277 (365)
T 1jof_A          198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANK  277 (365)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESS
T ss_pred             eEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCC
Confidence            666654  466655 47899999865  3331      11111    1 1       478899 99999988776543 2


Q ss_pred             -----eEEEEECC-CCceEEE---EeccccceeeeeeEecC---CCceEEeecC-CCeEEEEECcCc
Q 023772          207 -----TLRLLDRS-TGELLQE---YKGHICKSFKTDCCLTN---SDAHVTGGSE-DGYIYFWDLVDA  260 (277)
Q Consensus       207 -----~i~~wd~~-~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~l~sgs~-d~~i~iwd~~~~  260 (277)
                           .|++|++. ++++...   ...+.  ......+++|   ++++|++++. ++.|++|+++..
T Consensus       278 ~~~~~~i~v~~~~~~g~~~~~~~~~~~~~--~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          278 FELQGYIAGFKLRDCGSIEKQLFLSPTPT--SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             TTSCCEEEEEEECTTSCEEEEEEEEECSS--CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCCCeEEEEEECCCCCEEEeeeeeecCC--CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence                 89999996 5665432   22221  1123356788   7999988876 589999998765

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.86  E-value=4.2e-20  Score=166.66  Aligned_cols=244  Identities=11%  Similarity=0.027  Sum_probs=166.0

Q ss_pred             ceeeccCC---cEEEEEEeCCCCEEEEEeCC---------CcEEEEcCCCCeeEEEEe---ccCccEEEEEEcCCCCEEE
Q 023772           12 NVLKGHEG---AVLAARFNGDGNYCLSCGKD---------RTIRLWNPHRGIHIKTYK---SHGREVRDVHVTADNSKLI   76 (277)
Q Consensus        12 ~~l~~H~~---~V~~~~~~~~~~~l~s~s~d---------~~v~iwd~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~   76 (277)
                      ..+.+|..   .|.+++|+|||++|++++.+         +.+.+||+.+++. ..+.   .|...+..++|+|++++|+
T Consensus        51 ~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la  129 (723)
T 1xfd_A           51 VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLI  129 (723)
T ss_dssp             EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEE
T ss_pred             EEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEE
Confidence            34555654   49999999999999999875         7888999998875 3333   3444588999999999999


Q ss_pred             EEeCCCcEEEEECCCCceeEEeecccCce------------------eEEEEecCCCEEEEEeCCC--------------
Q 023772           77 SCGGDRQIFYWDVSTGRVIRKFRGHESEV------------------NAVKFNEYSSVVVSAGYDQ--------------  124 (277)
Q Consensus        77 t~s~d~~v~~wd~~~~~~~~~~~~h~~~v------------------~~i~~~~~~~~l~s~~~d~--------------  124 (277)
                      .++. +.|++||+.+++..+....+...+                  .++.|+|+++.|++++.|+              
T Consensus       130 ~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~  208 (723)
T 1xfd_A          130 FIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGS  208 (723)
T ss_dssp             EEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSS
T ss_pred             EEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCc
Confidence            9886 799999999988766555544333                  7899999999999988653              


Q ss_pred             --------------------cEEEEeCccCCCcceEeecc------ccCcEEEEEecCCe--EEEeec----CCcEEEEE
Q 023772          125 --------------------SLRAWDCRSHSTEPIQIIDS------FQDSVMSVCLTKTE--IIGGSV----DGTVRTFD  172 (277)
Q Consensus       125 --------------------~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~--~~~g~~----d~~i~i~d  172 (277)
                                          +|++||+.+...  ...+..      +...+..+.++++.  +++...    +..|.+||
T Consensus       209 ~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~--~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d  286 (723)
T 1xfd_A          209 IYPTVKPYHYPKAGSENPSISLHVIGLNGPTH--DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCD  286 (723)
T ss_dssp             SSCCCEEEECCBTTSCCCEEEEEEEESSSSCC--CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEE
T ss_pred             CCCcceeccCCCCCCCCCeeEEEEEECCCCce--eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEe
Confidence                                799999876532  122222      13456667777654  544432    35799999


Q ss_pred             ccCCccccc---CCCCCe----eEEEEeCCCCEEEE--EecCC------eEEEEE-CCCCc--eEEEEeccccceeeeee
Q 023772          173 IRVGRELSD---DLGQPV----NCISMSNDGNCILA--SCLDS------TLRLLD-RSTGE--LLQEYKGHICKSFKTDC  234 (277)
Q Consensus       173 ~~~~~~~~~---~~~~~v----~~~~~s~~~~~l~~--~~~d~------~i~~wd-~~~~~--~~~~~~~~~~~~~~~~~  234 (277)
                      +.+++....   .....+    ..++|+|+|+.|+.  +..++      .|++|| ...++  +...+.... .......
T Consensus       287 ~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~-~~~~~~~  365 (723)
T 1xfd_A          287 ATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGD-WDVTKIL  365 (723)
T ss_dssp             TTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSS-SCEEEEE
T ss_pred             CCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCC-eEEEeee
Confidence            987764321   111222    37899999997765  45666      577788 34444  134444221 1122224


Q ss_pred             EecCCCceEEeec-CC--CeEEEEECcCc
Q 023772          235 CLTNSDAHVTGGS-ED--GYIYFWDLVDA  260 (277)
Q Consensus       235 ~~~~~~~~l~sgs-~d--~~i~iwd~~~~  260 (277)
                      .++|+++.|+..+ .+  +.+++|++...
T Consensus       366 ~~spdg~~l~~~~~~~~~~~~~l~~~~~~  394 (723)
T 1xfd_A          366 AYDEKGNKIYFLSTEDLPRRRQLYSANTV  394 (723)
T ss_dssp             EEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred             EEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence            7899999887544 44  78999998653

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.85  E-value=3.5e-20  Score=167.15  Aligned_cols=241  Identities=9%  Similarity=0.070  Sum_probs=164.8

Q ss_pred             EEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCc---cEEEEEEcCCCCEEEEEeC---------CCcEEEEECC
Q 023772           23 AARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGR---EVRDVHVTADNSKLISCGG---------DRQIFYWDVS   90 (277)
Q Consensus        23 ~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~---~v~~~~~~~~~~~l~t~s~---------d~~v~~wd~~   90 (277)
                      .+.|+|+|+++++ +.|++|++||..+++....+..|..   .+.+++|+|++++|+.++.         ++.|++||++
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            7899999966555 5699999999999988777776644   3899999999999998876         7899999999


Q ss_pred             CCcee--EEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccC-------------------cE
Q 023772           91 TGRVI--RKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQD-------------------SV  149 (277)
Q Consensus        91 ~~~~~--~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-------------------~~  149 (277)
                      +++.+  ..+   ...+..+.|+||++.|+.+. |+.|++||+.+.....+. ......                   ..
T Consensus        99 ~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~-~~~~~~~v~~g~~~~v~~ee~~~~~~~  173 (719)
T 1z68_A           99 NGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQIT-FNGRENKIFNGIPDWVYEEEMLATKYA  173 (719)
T ss_dssp             TTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECC-CCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred             CCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEe-cCCCcCCeEcccccceeeeecccCccc
Confidence            98863  222   35688899999999999885 789999998765332111 111111                   12


Q ss_pred             EEEEecCCeEEEeecCC----------------------------------cEEEEEccCCccc---c-------cCCCC
Q 023772          150 MSVCLTKTEIIGGSVDG----------------------------------TVRTFDIRVGREL---S-------DDLGQ  185 (277)
Q Consensus       150 ~~~~~~~~~~~~g~~d~----------------------------------~i~i~d~~~~~~~---~-------~~~~~  185 (277)
                      .++.++++.++.++.|.                                  .|++||+.+++..   .       ..+..
T Consensus       174 ~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~  253 (719)
T 1z68_A          174 LWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY  253 (719)
T ss_dssp             EEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCE
T ss_pred             EEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcc
Confidence            33444456688776552                                  7889999876542   1       12344


Q ss_pred             CeeEEEEeCCCCEEEEEecC----CeEEEEE----CCCCceEEEE----ecccccee---eeeeEecCCCceEEe--ecC
Q 023772          186 PVNCISMSNDGNCILASCLD----STLRLLD----RSTGELLQEY----KGHICKSF---KTDCCLTNSDAHVTG--GSE  248 (277)
Q Consensus       186 ~v~~~~~s~~~~~l~~~~~d----~~i~~wd----~~~~~~~~~~----~~~~~~~~---~~~~~~~~~~~~l~s--gs~  248 (277)
                      .+..++|+||++.+++....    ..|++||    ..++++...+    .++.....   .....++|+|+.++.  +..
T Consensus       254 ~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  333 (719)
T 1z68_A          254 YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDK  333 (719)
T ss_dssp             EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECT
T ss_pred             eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEcc
Confidence            68899999998766664332    2488899    8777655443    23322111   014578999986543  445


Q ss_pred             CC--eEEEEECcCccceeeeccCc
Q 023772          249 DG--YIYFWDLVDASVVAKFKAHS  270 (277)
Q Consensus       249 d~--~i~iwd~~~~~~~~~~~~h~  270 (277)
                      +|  .|++||+.+++ ...+..+.
T Consensus       334 ~g~~~l~~~~~~~~~-~~~lt~~~  356 (719)
T 1z68_A          334 DGYKHIHYIKDTVEN-AIQITSGK  356 (719)
T ss_dssp             TSCEEEEEESSCSTT-CEECSCSS
T ss_pred             CCceEEEEEECCCCc-eEecccCc
Confidence            55  57778887766 45555444

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.84  E-value=4.6e-18  Score=140.15  Aligned_cols=232  Identities=12%  Similarity=0.103  Sum_probs=152.4

Q ss_pred             eCCCcEEEEcC--CCCeeEE-EEeccCccEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCc--eeEEeecccCceeEE
Q 023772           37 GKDRTIRLWNP--HRGIHIK-TYKSHGREVRDVHVTADNSKLISCGG---DRQIFYWDVSTGR--VIRKFRGHESEVNAV  108 (277)
Q Consensus        37 s~d~~v~iwd~--~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~t~s~---d~~v~~wd~~~~~--~~~~~~~h~~~v~~i  108 (277)
                      +.++.+.+|++  .+++... ....+...+..++|+|+++ |++++.   ++.|.+||+.+++  .+..+..+...+..+
T Consensus        13 ~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~   91 (347)
T 3hfq_A           13 KTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYV   91 (347)
T ss_dssp             SSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEE
T ss_pred             CCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEE
Confidence            34567777754  4565433 3344567788999999998 655544   6899999997765  455555677788899


Q ss_pred             EEecCCCEEEEEe-CCCcEEEEeCccC-CCcceEeeccc---------cCcEEEEEecC--CeEEEeecCCcEEEEEcc-
Q 023772          109 KFNEYSSVVVSAG-YDQSLRAWDCRSH-STEPIQIIDSF---------QDSVMSVCLTK--TEIIGGSVDGTVRTFDIR-  174 (277)
Q Consensus       109 ~~~~~~~~l~s~~-~d~~i~iwd~~~~-~~~~~~~~~~~---------~~~~~~~~~~~--~~~~~g~~d~~i~i~d~~-  174 (277)
                      +++|+++++++++ .++.+.+|++... ....+......         ...+..+.+++  +.+++...++.|.+||+. 
T Consensus        92 a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~  171 (347)
T 3hfq_A           92 AVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSD  171 (347)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECT
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECC
Confidence            9999999888887 7899999998532 22222222110         11244555554  435555668899999998 


Q ss_pred             CCccc-----ccCCCCCeeEEEEeCCCCEEEE-EecCCeEEEEECCC--Cce--EEEEecccc----ceeeeeeEecCCC
Q 023772          175 VGREL-----SDDLGQPVNCISMSNDGNCILA-SCLDSTLRLLDRST--GEL--LQEYKGHIC----KSFKTDCCLTNSD  240 (277)
Q Consensus       175 ~~~~~-----~~~~~~~v~~~~~s~~~~~l~~-~~~d~~i~~wd~~~--~~~--~~~~~~~~~----~~~~~~~~~~~~~  240 (277)
                      .++..     ....+..+..++|+|+|+++++ +..++.+++|++..  ++.  +..+.....    ......++++|+|
T Consensus       172 ~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG  251 (347)
T 3hfq_A          172 AGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDG  251 (347)
T ss_dssp             TSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTS
T ss_pred             CCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCC
Confidence            33221     1123346788999999996655 56788999999864  543  223322211    1234557899999


Q ss_pred             ceE-EeecCCCeEEEEECcC---ccceeeeccC
Q 023772          241 AHV-TGGSEDGYIYFWDLVD---ASVVAKFKAH  269 (277)
Q Consensus       241 ~~l-~sgs~d~~i~iwd~~~---~~~~~~~~~h  269 (277)
                      ++| +++..++.|.+|++..   .+.+..+..|
T Consensus       252 ~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~  284 (347)
T 3hfq_A          252 HFLYVSNRGYNTLAVFAVTADGHLTLIQQISTE  284 (347)
T ss_dssp             CEEEEEEETTTEEEEEEECGGGCEEEEEEEECS
T ss_pred             CEEEEEeCCCCEEEEEEECCCCcEEEeEEEecC
Confidence            977 5566789999999973   2455555543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.84  E-value=7.3e-18  Score=138.23  Aligned_cols=238  Identities=14%  Similarity=0.198  Sum_probs=173.7

Q ss_pred             cCCcEEEEEEeCCCCEEEEEeCC------------------------CcEEEEcCCCCeeEEEEe-ccCccEEEEEEcCC
Q 023772           17 HEGAVLAARFNGDGNYCLSCGKD------------------------RTIRLWNPHRGIHIKTYK-SHGREVRDVHVTAD   71 (277)
Q Consensus        17 H~~~V~~~~~~~~~~~l~s~s~d------------------------~~v~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~   71 (277)
                      --+.+.+++++++|+++++.+.+                        ++|.+||..+++.+..+. .+...+..++++++
T Consensus        22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~  101 (329)
T 3fvz_A           22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD  101 (329)
T ss_dssp             CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred             ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence            34779999999999999988877                        479999999888877665 34457899999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCCc-eeEEe---------ecccCceeEEEEec-CCCEEEEEe-CCCcEEEEeCccCCCcce
Q 023772           72 NSKLISCGGDRQIFYWDVSTGR-VIRKF---------RGHESEVNAVKFNE-YSSVVVSAG-YDQSLRAWDCRSHSTEPI  139 (277)
Q Consensus        72 ~~~l~t~s~d~~v~~wd~~~~~-~~~~~---------~~h~~~v~~i~~~~-~~~~l~s~~-~d~~i~iwd~~~~~~~~~  139 (277)
                      ++.+++...++.|++||.+... .+..+         ..+-.....++++| ++.++++.+ .++.|++|+... .  ..
T Consensus       102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~--~~  178 (329)
T 3fvz_A          102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-K--FV  178 (329)
T ss_dssp             SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-C--EE
T ss_pred             CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-C--EE
Confidence            9988888889999999986542 45555         23445688999999 788888886 699999999532 2  22


Q ss_pred             Eeecc----------ccCcEEEEEecCC--e-EEEeecCCcEEEEEccCCccccc----CCCCCeeEEEEeC------CC
Q 023772          140 QIIDS----------FQDSVMSVCLTKT--E-IIGGSVDGTVRTFDIRVGRELSD----DLGQPVNCISMSN------DG  196 (277)
Q Consensus       140 ~~~~~----------~~~~~~~~~~~~~--~-~~~g~~d~~i~i~d~~~~~~~~~----~~~~~v~~~~~s~------~~  196 (277)
                      ..+..          .......+.+++.  . +++...++.|++||..+++.+..    ..+..+..++|+|      +|
T Consensus       179 ~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g  258 (329)
T 3fvz_A          179 TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNG  258 (329)
T ss_dssp             EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEEC
T ss_pred             EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCC
Confidence            22211          1122455666543  3 56667788999999986654332    2345788899999      33


Q ss_pred             CEEEEEecCCeEEEEECCCCceEEEEe---ccccceeeeeeEecCCCceEEeecCCCeEEEEECcC
Q 023772          197 NCILASCLDSTLRLLDRSTGELLQEYK---GHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVD  259 (277)
Q Consensus       197 ~~l~~~~~d~~i~~wd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~  259 (277)
                      +.+++...+..+++||..+++.+..+.   ++  .......+++++|.++++...++.|++|++..
T Consensus       259 ~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~--~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          259 KPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKH--FDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             CCCTTCSCCCCEEEEETTTCCEEEEECCSSSC--CSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             CEEeccCCCcEEEEEEcCCCeEEEEEcCCCCc--cCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence            322333345589999999999988874   23  23345567899998888889999999999864

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.84  E-value=1.9e-19  Score=162.98  Aligned_cols=242  Identities=9%  Similarity=0.029  Sum_probs=164.8

Q ss_pred             CCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCcc-----EEEEEEcCCCCEEEEEeCC---------Cc
Q 023772           18 EGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGRE-----VRDVHVTADNSKLISCGGD---------RQ   83 (277)
Q Consensus        18 ~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~-----v~~~~~~~~~~~l~t~s~d---------~~   83 (277)
                      ......+.|+|||++++++  |++|++||+.+++....+..|...     ..+..|+|++++|+.++.+         +.
T Consensus        16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~   93 (740)
T 4a5s_A           16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS   93 (740)
T ss_dssp             CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred             cccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence            3446689999999999886  999999999999988888877643     2447899999999998876         55


Q ss_pred             EEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcE--------------
Q 023772           84 IFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSV--------------  149 (277)
Q Consensus        84 v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--------------  149 (277)
                      +.+||++++++. .+..|...+....|+||++.|+.+ .|+.|++|++.......+. .......+              
T Consensus        94 ~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt-~~g~~~~~~~g~~~~v~~ee~~  170 (740)
T 4a5s_A           94 YDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRIT-WTGKEDIIYNGITDWVYEEEVF  170 (740)
T ss_dssp             EEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECC-SCCBTTTEEESBCCHHHHHHTS
T ss_pred             EEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEc-CCCCccceecCcccccccchhc
Confidence            679999998865 466678889999999999999987 5789999998764322111 11111111              


Q ss_pred             -----EEEEecCCeEEEeecCC------------------------------------cEEEEEccC---C---cccccC
Q 023772          150 -----MSVCLTKTEIIGGSVDG------------------------------------TVRTFDIRV---G---RELSDD  182 (277)
Q Consensus       150 -----~~~~~~~~~~~~g~~d~------------------------------------~i~i~d~~~---~---~~~~~~  182 (277)
                           ..++++++.++.++.|.                                    +|.+||+.+   +   +.....
T Consensus       171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~  250 (740)
T 4a5s_A          171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQIT  250 (740)
T ss_dssp             SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEEC
T ss_pred             CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEec
Confidence                 33444555566554221                                    477888887   6   221111


Q ss_pred             -------CCCCeeEEEEeCCCCEEEEEec----CCeEEEEECCCCc----eE--EEE--ecccccee---eeeeEecCCC
Q 023772          183 -------LGQPVNCISMSNDGNCILASCL----DSTLRLLDRSTGE----LL--QEY--KGHICKSF---KTDCCLTNSD  240 (277)
Q Consensus       183 -------~~~~v~~~~~s~~~~~l~~~~~----d~~i~~wd~~~~~----~~--~~~--~~~~~~~~---~~~~~~~~~~  240 (277)
                             ....+..++|+|||+.++....    +..|++||+.+++    +.  ..+  .++.....   .....++|||
T Consensus       251 ~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG  330 (740)
T 4a5s_A          251 APASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDG  330 (740)
T ss_dssp             CCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTS
T ss_pred             CCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCC
Confidence                   3345788999999996665432    3379999998876    22  122  22321111   1245789999


Q ss_pred             ceEE-eecC-C--CeEEEEECcCcccee
Q 023772          241 AHVT-GGSE-D--GYIYFWDLVDASVVA  264 (277)
Q Consensus       241 ~~l~-sgs~-d--~~i~iwd~~~~~~~~  264 (277)
                      +.++ ..+. +  ..|++||...++...
T Consensus       331 ~~l~~~~s~~~G~~~l~~~~~~~~~~~~  358 (740)
T 4a5s_A          331 NSFYKIISNEEGYRHICYFQIDKKDCTF  358 (740)
T ss_dssp             SEEEEEEECTTSCEEEEEEETTCSSCEE
T ss_pred             CEEEEEEEcCCCceEEEEEECCCCceEe
Confidence            9766 5543 3  468899998765543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.83  E-value=4.2e-18  Score=142.33  Aligned_cols=257  Identities=11%  Similarity=0.058  Sum_probs=170.4

Q ss_pred             ccceeeccCCcEEE-----EEEeCCCCEEEEEeC-CCc--EEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCC
Q 023772           10 EANVLKGHEGAVLA-----ARFNGDGNYCLSCGK-DRT--IRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGD   81 (277)
Q Consensus        10 ~~~~l~~H~~~V~~-----~~~~~~~~~l~s~s~-d~~--v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d   81 (277)
                      +...+..|.+....     .+|+|||++|+.++. ++.  |.+||+.+++.......+...+....|+|++++|+.++.+
T Consensus        22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~  101 (388)
T 3pe7_A           22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG  101 (388)
T ss_dssp             EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT
T ss_pred             ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC
Confidence            34556677776666     889999999998887 674  8888999988777777776666678899999999999999


Q ss_pred             CcEEEEECCCCceeEEeecccCceeEEE--EecCCCEEEEE----------------------eCCCcEEEEeCccCCCc
Q 023772           82 RQIFYWDVSTGRVIRKFRGHESEVNAVK--FNEYSSVVVSA----------------------GYDQSLRAWDCRSHSTE  137 (277)
Q Consensus        82 ~~v~~wd~~~~~~~~~~~~h~~~v~~i~--~~~~~~~l~s~----------------------~~d~~i~iwd~~~~~~~  137 (277)
                      +.+++||+.+++....+..+...+....  +++++++++..                      +.+..|.+||+.+....
T Consensus       102 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~  181 (388)
T 3pe7_A          102 RNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST  181 (388)
T ss_dssp             TEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE
T ss_pred             CeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE
Confidence            9999999999987766666655554343  47888888743                      24467999998765332


Q ss_pred             ceEeeccccCcEEEEEecC-C--eEEEeec------CCcEEEEEccCCccccc-CCC--CCeeEEEEeCCCCEEEEEec-
Q 023772          138 PIQIIDSFQDSVMSVCLTK-T--EIIGGSV------DGTVRTFDIRVGRELSD-DLG--QPVNCISMSNDGNCILASCL-  204 (277)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~-~--~~~~g~~------d~~i~i~d~~~~~~~~~-~~~--~~v~~~~~s~~~~~l~~~~~-  204 (277)
                         .+......+..+.+++ +  .++....      ...|.++|...+..... ...  ..+....|+|+|+.|+..+. 
T Consensus       182 ---~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~  258 (388)
T 3pe7_A          182 ---VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYL  258 (388)
T ss_dssp             ---EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred             ---EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecC
Confidence               2223334455666666 3  4555443      23677788765432221 111  24778899999997765443 


Q ss_pred             CC----eEEEEECCCCceE--EEEecccccee-eeeeEecCCCceEEee---------cCCCeEEEEECcCccceeeecc
Q 023772          205 DS----TLRLLDRSTGELL--QEYKGHICKSF-KTDCCLTNSDAHVTGG---------SEDGYIYFWDLVDASVVAKFKA  268 (277)
Q Consensus       205 d~----~i~~wd~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~l~sg---------s~d~~i~iwd~~~~~~~~~~~~  268 (277)
                      ++    .|++||+.+++..  ..+.++..... .....++|+|+.|+..         ..+..|++||+.+++. ..+..
T Consensus       259 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~  337 (388)
T 3pe7_A          259 KGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVAR  337 (388)
T ss_dssp             TTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEE
T ss_pred             CCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEecc
Confidence            22    3999999988743  33333110000 1112578888877743         4567899999998765 44554


Q ss_pred             Cc
Q 023772          269 HS  270 (277)
Q Consensus       269 h~  270 (277)
                      |.
T Consensus       338 ~~  339 (388)
T 3pe7_A          338 HD  339 (388)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.83  E-value=3.4e-17  Score=147.55  Aligned_cols=243  Identities=16%  Similarity=0.136  Sum_probs=166.2

Q ss_pred             ccCCcEEEEEEeCCCCEEEEEeCCC-----cEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCc-------
Q 023772           16 GHEGAVLAARFNGDGNYCLSCGKDR-----TIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQ-------   83 (277)
Q Consensus        16 ~H~~~V~~~~~~~~~~~l~s~s~d~-----~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~-------   83 (277)
                      +|...+..++|||||++|+.++.++     .|++||+.+++.+.....+ ..+..++|+|+++.|+.++.++.       
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence            4555788999999999999665443     8999999999876543322 23678999999999998887765       


Q ss_pred             ---------EEEEECCCCce----eEEeecccCceeEEEEecCCCEEEEEeC-----CCcEEEEeCcc------CCCcce
Q 023772           84 ---------IFYWDVSTGRV----IRKFRGHESEVNAVKFNEYSSVVVSAGY-----DQSLRAWDCRS------HSTEPI  139 (277)
Q Consensus        84 ---------v~~wd~~~~~~----~~~~~~h~~~v~~i~~~~~~~~l~s~~~-----d~~i~iwd~~~------~~~~~~  139 (277)
                               |++|++.+++.    +.....|...+.++.++|+++.|+.++.     +..|.+||+..      ......
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~  280 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV  280 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred             ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence                     99999988762    2222335556788999999999887765     56899999875      321222


Q ss_pred             EeeccccCcEEEEEecCCeEEEeecC----CcEEEEEccCCc-----ccccCCC-CCeeEEEEeCCCCEEEEEecCCe--
Q 023772          140 QIIDSFQDSVMSVCLTKTEIIGGSVD----GTVRTFDIRVGR-----ELSDDLG-QPVNCISMSNDGNCILASCLDST--  207 (277)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~g~~d----~~i~i~d~~~~~-----~~~~~~~-~~v~~~~~s~~~~~l~~~~~d~~--  207 (277)
                      ............+..++..++..+..    ..|.+||+..+.     .+..... ..+..++|++++.++++...|+.  
T Consensus       281 ~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~  360 (710)
T 2xdw_A          281 KLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNT  360 (710)
T ss_dssp             EEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEE
T ss_pred             EeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEE
Confidence            22222222233455566666554432    369999987653     1222222 35778899977777888888884  


Q ss_pred             EEEEECCCCceEEEEeccccceeeeeeEecCCCceEE-e---ecCCCeEEEEECcCcc
Q 023772          208 LRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVT-G---GSEDGYIYFWDLVDAS  261 (277)
Q Consensus       208 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s---gs~d~~i~iwd~~~~~  261 (277)
                      |++||+.+++.++.+..+.  .......+++++..++ +   ....+.|+.||+.+++
T Consensus       361 l~~~~~~~g~~~~~l~~~~--~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          361 LQLHDLATGALLKIFPLEV--GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEEETTTCCEEEEECCCS--SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEECCCCCEEEecCCCC--ceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            5667877787777776652  2334455677776554 2   3456899999999887

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.83  E-value=8.1e-18  Score=139.70  Aligned_cols=245  Identities=11%  Similarity=0.090  Sum_probs=171.0

Q ss_pred             eeccCCcEEEEEEeCCCCEEEEEe----------CCCcEEEEcCCCCeeEEEEecc------CccEEEEEEcCCCCEEEE
Q 023772           14 LKGHEGAVLAARFNGDGNYCLSCG----------KDRTIRLWNPHRGIHIKTYKSH------GREVRDVHVTADNSKLIS   77 (277)
Q Consensus        14 l~~H~~~V~~~~~~~~~~~l~s~s----------~d~~v~iwd~~~~~~~~~~~~h------~~~v~~~~~~~~~~~l~t   77 (277)
                      +..+..+  .++|+|||++++.++          .+++|.+||..+++.+.++...      ......++++|++++|++
T Consensus        47 i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v  124 (361)
T 2oiz_A           47 VPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVL  124 (361)
T ss_dssp             EECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEE
T ss_pred             ecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEE
Confidence            4445555  899999999999886          3678999999998888887643      345678999999999998


Q ss_pred             EeC--CCcEEEEECCCCceeEE-eecccCceeEEEEecCC-CEEEEEeCCCcEEEEeCccCCCcc-e----EeeccccCc
Q 023772           78 CGG--DRQIFYWDVSTGRVIRK-FRGHESEVNAVKFNEYS-SVVVSAGYDQSLRAWDCRSHSTEP-I----QIIDSFQDS  148 (277)
Q Consensus        78 ~s~--d~~v~~wd~~~~~~~~~-~~~h~~~v~~i~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~-~----~~~~~~~~~  148 (277)
                      +..  +++|.+||+++++.+.+ +.. .. ...+.+.|++ ..+++.+.||.+.+|+........ .    ..+.....+
T Consensus       125 ~n~~~~~~v~v~d~~~~~~~~~~i~~-~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~  202 (361)
T 2oiz_A          125 QNASPATSIGIVDVAKGDYVEDVTAA-AG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP  202 (361)
T ss_dssp             EEESSSEEEEEEETTTTEEEEEEGGG-TT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC
T ss_pred             ECCCCCCeEEEEECCCCcEEEEEecC-CC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc
Confidence            863  68999999999988877 542 22 2234566654 677888899999999875421111 0    011111111


Q ss_pred             E-EEEEecCCeEEEeecCCcEEEEEccCCccc-----cc------CC---CCCeeEEEEeCCCCEEEEEec---------
Q 023772          149 V-MSVCLTKTEIIGGSVDGTVRTFDIRVGREL-----SD------DL---GQPVNCISMSNDGNCILASCL---------  204 (277)
Q Consensus       149 ~-~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~-----~~------~~---~~~v~~~~~s~~~~~l~~~~~---------  204 (277)
                      + .....++..++..+.++.+.++|+......     ..      ..   ......++|+|+++.++++..         
T Consensus       203 ~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~  282 (361)
T 2oiz_A          203 IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHK  282 (361)
T ss_dssp             BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTT
T ss_pred             eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCccccc
Confidence            1 011223445566667888999998643211     00      00   011223789999888776543         


Q ss_pred             --CCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCc--cceeeec
Q 023772          205 --DSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDA--SVVAKFK  267 (277)
Q Consensus       205 --d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~--~~~~~~~  267 (277)
                        .+.|.+||..+++.+..+..+.    ...+.++|++++|+++.. +.|.+||..++  ++++++.
T Consensus       283 ~~~~~v~viD~~t~~~v~~i~~~~----p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~  344 (361)
T 2oiz_A          283 FPAAEIWVMDTKTKQRVARIPGRD----ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIE  344 (361)
T ss_dssp             CCCSEEEEEETTTTEEEEEEECTT----CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEET
T ss_pred             CCCceEEEEECCCCcEEEEEecCC----eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEec
Confidence              3489999999999999988764    456678999999998876 99999999999  9998874

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.82  E-value=7.2e-19  Score=154.95  Aligned_cols=204  Identities=13%  Similarity=0.074  Sum_probs=147.4

Q ss_pred             CccEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceeEEeeccc-CceeEEEEecCCCEEEEEeC---CCcEEEEeCcc-
Q 023772           60 GREVRDVHVTADNSKLISCGG-DRQIFYWDVSTGRVIRKFRGHE-SEVNAVKFNEYSSVVVSAGY---DQSLRAWDCRS-  133 (277)
Q Consensus        60 ~~~v~~~~~~~~~~~l~t~s~-d~~v~~wd~~~~~~~~~~~~h~-~~v~~i~~~~~~~~l~s~~~---d~~i~iwd~~~-  133 (277)
                      ..+|.++.|+||+++|+.++. |+++++|++++++..+ +..|. ..+.++.|+|+ +++++++.   +...++|.+.. 
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence            457999999999999999887 9999999997666544 44454 68999999999 78887775   55667766543 


Q ss_pred             -CCCcceEeeccccCcEEEEEecCCe-EEEeecCCcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecC----Ce
Q 023772          134 -HSTEPIQIIDSFQDSVMSVCLTKTE-IIGGSVDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLD----ST  207 (277)
Q Consensus       134 -~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----~~  207 (277)
                       .... ..........+.++.++++. +++.+.++.+.+||+.+++......... .+++|||||++|++++.|    +.
T Consensus        99 ~~g~~-~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~-~~~~~spDG~~la~~~~~~~~~~~  176 (582)
T 3o4h_A           99 RPGEE-QRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG-FGFVSDIRGDLIAGLGFFGGGRVS  176 (582)
T ss_dssp             STTCC-EECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS-CEEEEEEETTEEEEEEEEETTEEE
T ss_pred             CCCcc-ccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC-ceEEECCCCCEEEEEEEcCCCCeE
Confidence             2222 22222222335567777765 3344445556699998775432211112 789999999999988877    78


Q ss_pred             EEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCC--eEEEEECcCccceeeeccCcc
Q 023772          208 LRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDG--YIYFWDLVDASVVAKFKAHSL  271 (277)
Q Consensus       208 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~--~i~iwd~~~~~~~~~~~~h~~  271 (277)
                      |++||+.+++.. .+..+..  .....+++|||++|+++..|+  .|++||+.+++.. .+.+|..
T Consensus       177 i~~~d~~~g~~~-~l~~~~~--~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~  238 (582)
T 3o4h_A          177 LFTSNLSSGGLR-VFDSGEG--SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSK  238 (582)
T ss_dssp             EEEEETTTCCCE-EECCSSC--EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCS
T ss_pred             EEEEcCCCCCce-EeecCCC--ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCc
Confidence            999999888765 5565543  346678999999999888898  8999999999887 7777754

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.80  E-value=7.2e-18  Score=138.58  Aligned_cols=197  Identities=12%  Similarity=0.136  Sum_probs=142.8

Q ss_pred             cEEEEEEeCCCCEEE-EEeCCCcEEEEcCCCCeeEEEEeccC------ccEEEEEEcCCCCEEEEEeCC-----------
Q 023772           20 AVLAARFNGDGNYCL-SCGKDRTIRLWNPHRGIHIKTYKSHG------REVRDVHVTADNSKLISCGGD-----------   81 (277)
Q Consensus        20 ~V~~~~~~~~~~~l~-s~s~d~~v~iwd~~~~~~~~~~~~h~------~~v~~~~~~~~~~~l~t~s~d-----------   81 (277)
                      .+..++|+|+|++++ +.+.++.|.+||+.+++....+..+.      ..+..++|+|+++++++++.+           
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  123 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK  123 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence            577899999998665 56678999999999998887776432      237899999999999988865           


Q ss_pred             -CcEEEEECCCCce---eEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeecccc-----------
Q 023772           82 -RQIFYWDVSTGRV---IRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQ-----------  146 (277)
Q Consensus        82 -~~v~~wd~~~~~~---~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-----------  146 (277)
                       +.|.+||+++++.   +..+. +...+.+++|+|+++ ++.++  +.|.+||+.+.....  .+....           
T Consensus       124 ~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~  197 (349)
T 1jmx_B          124 PPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTV--ALPLRNWNRKGYSAPDV  197 (349)
T ss_dssp             CCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEE--EECSTTCCCTTBCCCBC
T ss_pred             CCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEcc--CcEEEEeCCCCceec--cccccccCCccccCccc
Confidence             8999999988543   33443 344688899999999 55554  349999986543211  111000           


Q ss_pred             ---------------------------------------------------------CcEEEEEe---cCCeEEEeecCC
Q 023772          147 ---------------------------------------------------------DSVMSVCL---TKTEIIGGSVDG  166 (277)
Q Consensus       147 ---------------------------------------------------------~~~~~~~~---~~~~~~~g~~d~  166 (277)
                                                                               .....+.+   ++..++++  ++
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~  275 (349)
T 1jmx_B          198 LYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LN  275 (349)
T ss_dssp             CCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ES
T ss_pred             eeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cC
Confidence                                                                     01122222   33446655  88


Q ss_pred             cEEEEEccCCccccc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEec
Q 023772          167 TVRTFDIRVGRELSD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKG  224 (277)
Q Consensus       167 ~i~i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~  224 (277)
                      .|.+||+.+++.+.. ..+..+.+++|+|+|++|++++.++.|++||..+++.+..+..
T Consensus       276 ~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~  334 (349)
T 1jmx_B          276 RLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL  334 (349)
T ss_dssp             EEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred             eEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeec
Confidence            999999988765432 2345678999999999888888899999999999988877653

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.80  E-value=2.3e-16  Score=127.16  Aligned_cols=244  Identities=8%  Similarity=-0.001  Sum_probs=170.5

Q ss_pred             ccceeeccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023772           10 EANVLKGHEGAVLAARFNGDGN-YCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWD   88 (277)
Q Consensus        10 ~~~~l~~H~~~V~~~~~~~~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd   88 (277)
                      ....+..+.....+++|+++|+ +++++..++.|..||..++  ...+..+...+.+++++++++.+++...++.|.+||
T Consensus        19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d   96 (296)
T 3e5z_A           19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQR   96 (296)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEEC
T ss_pred             cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEc
Confidence            3455666777789999999998 7788888999999999877  667777788899999999999888877788999999


Q ss_pred             CCCCceeEEeecc----cCceeEEEEecCCCEEEEEeC-----------------CCcEEEEeCccCCCcceEeeccccC
Q 023772           89 VSTGRVIRKFRGH----ESEVNAVKFNEYSSVVVSAGY-----------------DQSLRAWDCRSHSTEPIQIIDSFQD  147 (277)
Q Consensus        89 ~~~~~~~~~~~~h----~~~v~~i~~~~~~~~l~s~~~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~  147 (277)
                      ..+++........    ...++.+++.++++++++.+.                 .+.|..++.. .   ..........
T Consensus        97 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g---~~~~~~~~~~  172 (296)
T 3e5z_A           97 EPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G---TLSAPIRDRV  172 (296)
T ss_dssp             STTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S---CEEEEECCCS
T ss_pred             CCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-C---CEEEeecCCC
Confidence            9887754332211    234677999999999887431                 2355555543 2   1222223333


Q ss_pred             cEEEEEecC--CeEEEeecCCcEEEEEcc-CCcc-----cccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceE
Q 023772          148 SVMSVCLTK--TEIIGGSVDGTVRTFDIR-VGRE-----LSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELL  219 (277)
Q Consensus       148 ~~~~~~~~~--~~~~~g~~d~~i~i~d~~-~~~~-----~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~  219 (277)
                      ....+.+++  ..+++.+.++.|.+||+. .++.     ........+..++++++|+++++.  ++.|++||.. ++.+
T Consensus       173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~  249 (296)
T 3e5z_A          173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDEL  249 (296)
T ss_dssp             SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEE
T ss_pred             CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEE
Confidence            445566654  446667778899999986 2221     112223456789999999866665  8899999997 7777


Q ss_pred             EEEeccccceeeeeeEe-cCCCceEEeecCCCeEEEEECcCccceeee
Q 023772          220 QEYKGHICKSFKTDCCL-TNSDAHVTGGSEDGYIYFWDLVDASVVAKF  266 (277)
Q Consensus       220 ~~~~~~~~~~~~~~~~~-~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~  266 (277)
                      ..+..+..   ...+++ +++++.|..++.+ .+.-++.++.++.+..
T Consensus       250 ~~~~~~~~---~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~~~~~  293 (296)
T 3e5z_A          250 GRVLTPQT---TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGLEHHH  293 (296)
T ss_dssp             EEEECSSC---CCEEEEESTTSCEEEEEETT-EEEEEECSCCBCCC--
T ss_pred             EEEECCCC---ceeEEEECCCCCEEEEEcCC-eEEEEEcccccccccc
Confidence            77776543   455667 5788888877765 4666777777665544

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.78  E-value=2.1e-17  Score=147.65  Aligned_cols=259  Identities=11%  Similarity=0.018  Sum_probs=176.0

Q ss_pred             ceeeccCCcEEEEEEeCCCCEEEEE--eCCCcEEEEcCCCCeeEEEEeccCccEE---------EEEEc--CCCCE-EEE
Q 023772           12 NVLKGHEGAVLAARFNGDGNYCLSC--GKDRTIRLWNPHRGIHIKTYKSHGREVR---------DVHVT--ADNSK-LIS   77 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~~~~~l~s~--s~d~~v~iwd~~~~~~~~~~~~h~~~v~---------~~~~~--~~~~~-l~t   77 (277)
                      ..+.+|...|..++|++++-++++.  +.++..+||....+...+.+..|...+.         ...|+  |++++ |+.
T Consensus        17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~   96 (662)
T 3azo_A           17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF   96 (662)
T ss_dssp             HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred             HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence            4567899999999999887777777  6688999998654555666666666666         66665  99998 765


Q ss_pred             EeC-CCcEEEEECC--C-CceeEEeec-----ccCceeEEEEecCCCEEEEEeCC----------CcEEEEeCccCC---
Q 023772           78 CGG-DRQIFYWDVS--T-GRVIRKFRG-----HESEVNAVKFNEYSSVVVSAGYD----------QSLRAWDCRSHS---  135 (277)
Q Consensus        78 ~s~-d~~v~~wd~~--~-~~~~~~~~~-----h~~~v~~i~~~~~~~~l~s~~~d----------~~i~iwd~~~~~---  135 (277)
                      ++. +..|.++++.  + ++ ...+..     |...+.+++|+|+++.|+.++.|          .+|++||+....   
T Consensus        97 ~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  175 (662)
T 3azo_A           97 THFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD  175 (662)
T ss_dssp             EBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred             EECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence            554 5667777765  2 43 444554     66788899999999999998887          589999987610   


Q ss_pred             -CcceEeec-cccCcEEEEEec--CCeEEEeecC--------CcEEEEEcc-CC---cc--cccCCCCCeeEEEEeCCCC
Q 023772          136 -TEPIQIID-SFQDSVMSVCLT--KTEIIGGSVD--------GTVRTFDIR-VG---RE--LSDDLGQPVNCISMSNDGN  197 (277)
Q Consensus       136 -~~~~~~~~-~~~~~~~~~~~~--~~~~~~g~~d--------~~i~i~d~~-~~---~~--~~~~~~~~v~~~~~s~~~~  197 (277)
                       .... .+. .....+..+.++  ++.++.++.+        ..|.+||+. ++   +.  +.......+..+.|+|+|+
T Consensus       176 ~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~  254 (662)
T 3azo_A          176 RSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS  254 (662)
T ss_dssp             GGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC
T ss_pred             CCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe
Confidence             1122 222 333344444444  4557766655        379999998 45   22  2222346788999999999


Q ss_pred             EEEEEecCC--eEEEEECCCCceEEEEeccccce---e---eeeeEecCCCceEEeecCCCeEEEE--ECcCccceeeec
Q 023772          198 CILASCLDS--TLRLLDRSTGELLQEYKGHICKS---F---KTDCCLTNSDAHVTGGSEDGYIYFW--DLVDASVVAKFK  267 (277)
Q Consensus       198 ~l~~~~~d~--~i~~wd~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~l~sgs~d~~i~iw--d~~~~~~~~~~~  267 (277)
                      +++++..++  .|++||..+++......++....   +   ....++++++.++++++. +.+++|  |...++ ++.+.
T Consensus       255 l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~  332 (662)
T 3azo_A          255 LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAA  332 (662)
T ss_dssp             EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECC
T ss_pred             EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEec
Confidence            878888888  67777776776544333321110   0   234567788999999988 999999  555554 67777


Q ss_pred             cCcceeE
Q 023772          268 AHSLVVK  274 (277)
Q Consensus       268 ~h~~~v~  274 (277)
                      .|...+.
T Consensus       333 ~~~~~~~  339 (662)
T 3azo_A          333 GPWTEWA  339 (662)
T ss_dssp             SSCCEEE
T ss_pred             CCCCeEE
Confidence            7765543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.77  E-value=5.2e-16  Score=123.93  Aligned_cols=237  Identities=11%  Similarity=0.079  Sum_probs=171.2

Q ss_pred             CCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccC-ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecc-cCce
Q 023772           28 GDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG-REVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGH-ESEV  105 (277)
Q Consensus        28 ~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h-~~~v  105 (277)
                      ..+++|++++.|+.|.+||.++|+.+.++..+. ..++++.+.|+++.++  +.++.|..||. +++.+.++..+ ...+
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~   79 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM   79 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence            356899999999999999999999999998776 4789999999999888  45788999999 89999988875 3578


Q ss_pred             eEEEEecCCCEEEEEeC-CCcEEEEeCccCCCcceEeecc-----c-cCcEEEEEecCCeEEEeecCCcEEEEEccCCcc
Q 023772          106 NAVKFNEYSSVVVSAGY-DQSLRAWDCRSHSTEPIQIIDS-----F-QDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRE  178 (277)
Q Consensus       106 ~~i~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~  178 (277)
                      .++.+.++++++++.+. ++.+..+|.. +.......+..     + .........+++.+++...++.|..||.. ++.
T Consensus        80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~  157 (276)
T 3no2_A           80 QTARILPDGNALVAWCGHPSTILEVNMK-GEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL  157 (276)
T ss_dssp             EEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             cccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE
Confidence            88999999999999887 7778777753 22111111110     0 01112334456678888889999999987 665


Q ss_pred             ccc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccc----eeeeeeEecCCCceEEeec--CC--
Q 023772          179 LSD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICK----SFKTDCCLTNSDAHVTGGS--ED--  249 (277)
Q Consensus       179 ~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~sgs--~d--  249 (277)
                      +.. .....+.++.+.++|+.+++++.++.|..+|..+|+.+..+......    .........++|..+++.+  ..  
T Consensus       158 ~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~  237 (276)
T 3no2_A          158 LNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDRE  237 (276)
T ss_dssp             EEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTT
T ss_pred             EEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCcccc
Confidence            433 22345667788999999999888889999999999999998754211    2234445567888777763  11  


Q ss_pred             ----CeEEEEEC-cCccceeeeccC
Q 023772          250 ----GYIYFWDL-VDASVVAKFKAH  269 (277)
Q Consensus       250 ----~~i~iwd~-~~~~~~~~~~~h  269 (277)
                          +..+++++ .+++++=++..+
T Consensus       238 ~~~~~~~~~~~~~~~g~~~W~~~~~  262 (276)
T 3no2_A          238 AGKGKHPQLVEIDSEGKVVWQLNDK  262 (276)
T ss_dssp             GGGSCCCSEEEECTTSBEEEEECCT
T ss_pred             ccccCCceEEEECCCCCEEEEecCc
Confidence                23355555 567777666544

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.77  E-value=4e-16  Score=128.38  Aligned_cols=233  Identities=12%  Similarity=0.089  Sum_probs=155.3

Q ss_pred             CcEEEEEEeCCCCEEEEEeCC---C--cEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCC------------
Q 023772           19 GAVLAARFNGDGNYCLSCGKD---R--TIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGD------------   81 (277)
Q Consensus        19 ~~V~~~~~~~~~~~l~s~s~d---~--~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d------------   81 (277)
                      ..+..+.|+|||++|+.++.+   +  .|.+||+.+++.......+ . +..+.|+|+++.|+.++.+            
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~  136 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD  136 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence            457789999999999987654   2  3777888888766555443 4 9999999999998887642            


Q ss_pred             ---------------CcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCC-------cEEEEeCccCCCcce
Q 023772           82 ---------------RQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQ-------SLRAWDCRSHSTEPI  139 (277)
Q Consensus        82 ---------------~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~-------~i~iwd~~~~~~~~~  139 (277)
                                     ..|.+||+.+++.+..+.. . .+..+.|+|++ +++++..++       ...+|.+...  +..
T Consensus       137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~--~~~  211 (347)
T 2gop_A          137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDG--KEE  211 (347)
T ss_dssp             CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETT--EEE
T ss_pred             cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCC--ceE
Confidence                           5799999998887455554 4 78889999999 888776542       4455554422  222


Q ss_pred             EeeccccCcEEEEEecCCeEEEeecC--------CcEEEEEccCCcc--cccCCCCCeeE-EEEeCCCCEEEEEecCCeE
Q 023772          140 QIIDSFQDSVMSVCLTKTEIIGGSVD--------GTVRTFDIRVGRE--LSDDLGQPVNC-ISMSNDGNCILASCLDSTL  208 (277)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~g~~d--------~~i~i~d~~~~~~--~~~~~~~~v~~-~~~s~~~~~l~~~~~d~~i  208 (277)
                      .... . ..+..+.++++.++.++.+        ..|.+||  .++.  +.......+.. +.|+ ++ .+++++.++.+
T Consensus       212 ~l~~-~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~  285 (347)
T 2gop_A          212 KMFE-K-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSV  285 (347)
T ss_dssp             EEEE-E-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEE
T ss_pred             Eecc-C-cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcE
Confidence            2222 2 3344446667777766544        3677788  3332  22223456775 8999 88 88899999999


Q ss_pred             EEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeE-EEEECcCccceeeeccCcce
Q 023772          209 RLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYI-YFWDLVDASVVAKFKAHSLV  272 (277)
Q Consensus       209 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i-~iwd~~~~~~~~~~~~h~~~  272 (277)
                      +|| +.+++...... +.  .......+++  .++++++.++.. ++|.+. ++ ..++..|...
T Consensus       286 ~l~-~~~g~~~~~~~-~~--~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n~~  342 (347)
T 2gop_A          286 NLY-IWDGEIKPIAK-GR--HWIMGFDVDE--IVVYLKETATRLRELFTWD-GE-EKQLTDYNDP  342 (347)
T ss_dssp             EEE-EESSSEEEEEC-SS--SEEEEEEESS--SEEEEEECSSSCCEEEEES-SS-EEECCCTTST
T ss_pred             EEE-EcCCceEEEec-CC--CeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EEEeccccHh
Confidence            999 87666543333 32  2334456777  566666666654 777776 54 5667777643

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.77  E-value=1.1e-15  Score=126.59  Aligned_cols=220  Identities=11%  Similarity=0.118  Sum_probs=143.0

Q ss_pred             eCCCcEEEEcC--CCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCC----CcEEEEECCC--Cc--eeEEeecccCcee
Q 023772           37 GKDRTIRLWNP--HRGIHIKTYKSHGREVRDVHVTADNSKLISCGGD----RQIFYWDVST--GR--VIRKFRGHESEVN  106 (277)
Q Consensus        37 s~d~~v~iwd~--~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d----~~v~~wd~~~--~~--~~~~~~~h~~~v~  106 (277)
                      +.++.|.+|++  .+++.......+...+..++|+|++++|++++.+    +.+.+|++..  ++  .+.....+.....
T Consensus        24 ~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~  103 (361)
T 3scy_A           24 GNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPC  103 (361)
T ss_dssp             SSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEE
T ss_pred             CCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcE
Confidence            45678999865  5565433222267788899999999999999876    7999998865  43  3334444555666


Q ss_pred             EEEEecCCCEEEEEe-CCCcEEEEeCccCCC-cceEe---ecc--------ccCcEEEEEecC--CeEEE-eecCCcEEE
Q 023772          107 AVKFNEYSSVVVSAG-YDQSLRAWDCRSHST-EPIQI---IDS--------FQDSVMSVCLTK--TEIIG-GSVDGTVRT  170 (277)
Q Consensus       107 ~i~~~~~~~~l~s~~-~d~~i~iwd~~~~~~-~~~~~---~~~--------~~~~~~~~~~~~--~~~~~-g~~d~~i~i  170 (277)
                      .+++  +++++++++ .++.+.+|++..... .....   ...        ....+..+.+++  +.+++ ...++.+.+
T Consensus       104 ~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v  181 (361)
T 3scy_A          104 YLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHK  181 (361)
T ss_dssp             EEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             EEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEE
Confidence            6777  777776666 688999999864321 11110   000        011234455554  44544 445789999


Q ss_pred             EEccCCcc------c---------ccCCCCCeeEEEEeCCCCEEEEEe-cCCeEEEEECCCCce--EEEEecccc-ceee
Q 023772          171 FDIRVGRE------L---------SDDLGQPVNCISMSNDGNCILASC-LDSTLRLLDRSTGEL--LQEYKGHIC-KSFK  231 (277)
Q Consensus       171 ~d~~~~~~------~---------~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~wd~~~~~~--~~~~~~~~~-~~~~  231 (277)
                      |++.....      +         .......+..++|+|+|+++++++ .++.|++||+.++++  +..+..... ....
T Consensus       182 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~  261 (361)
T 3scy_A          182 FNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGS  261 (361)
T ss_dssp             EEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCE
T ss_pred             EEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCc
Confidence            98874331      1         122345678999999999887776 689999999987754  233322111 1123


Q ss_pred             eeeEecCCCceEEeecC--CCeEEEEECc
Q 023772          232 TDCCLTNSDAHVTGGSE--DGYIYFWDLV  258 (277)
Q Consensus       232 ~~~~~~~~~~~l~sgs~--d~~i~iwd~~  258 (277)
                      ..++++|++++|+++..  ++.|.+|++.
T Consensus       262 ~~i~~spdg~~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          262 GDIHLSPDGKYLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             EEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred             ccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence            45779999998866554  5899999996

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.77  E-value=7.1e-17  Score=145.16  Aligned_cols=245  Identities=9%  Similarity=-0.036  Sum_probs=162.2

Q ss_pred             ccCCcEEEEEEeCCCCEEE-----EEeCCCcEEEEcCCCCeeEEEEeccCccE--EEEEEcCCCCEEEEEeCCCc-----
Q 023772           16 GHEGAVLAARFNGDGNYCL-----SCGKDRTIRLWNPHRGIHIKTYKSHGREV--RDVHVTADNSKLISCGGDRQ-----   83 (277)
Q Consensus        16 ~H~~~V~~~~~~~~~~~l~-----s~s~d~~v~iwd~~~~~~~~~~~~h~~~v--~~~~~~~~~~~l~t~s~d~~-----   83 (277)
                      +|...+..++|||||++|+     +|+.+.+|++||+.+++.+.  ..+-..+  ..++|+|+++.|+.++.|..     
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~  195 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV  195 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence            5666799999999999999     55566799999999987541  1121222  68999999999999988776     


Q ss_pred             --------EEEEECCCCc----eeEEeecccCceeEEEEecCCCEEEEEeCCC----cEEEEeCccCCCcceEeeccccC
Q 023772           84 --------IFYWDVSTGR----VIRKFRGHESEVNAVKFNEYSSVVVSAGYDQ----SLRAWDCRSHSTEPIQIIDSFQD  147 (277)
Q Consensus        84 --------v~~wd~~~~~----~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~----~i~iwd~~~~~~~~~~~~~~~~~  147 (277)
                              |++|++.+++    ++.....|...+.++.++|++++++.++.++    .|.+|+.....  ..........
T Consensus       196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~--~~~l~~~~~~  273 (695)
T 2bkl_A          196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD--FRLLVKGVGA  273 (695)
T ss_dssp             GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS--CEEEEECSSC
T ss_pred             ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc--eEEeecCCCc
Confidence                    9999998876    3434445666788999999999988887766    66666653322  2222222222


Q ss_pred             cEEEEEecCCeEEEeec----CCcEEEEEccCCcc-----cccCC-CCCeeEEEEeCCCCEEEEEecCCeEEEEECC-CC
Q 023772          148 SVMSVCLTKTEIIGGSV----DGTVRTFDIRVGRE-----LSDDL-GQPVNCISMSNDGNCILASCLDSTLRLLDRS-TG  216 (277)
Q Consensus       148 ~~~~~~~~~~~~~~g~~----d~~i~i~d~~~~~~-----~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~-~~  216 (277)
                      ....+..++. ++..+.    ++.|.+||+..+..     +.... ...+..++|+ ++..+++...|+..+||.+. .+
T Consensus       274 ~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g  351 (695)
T 2bkl_A          274 KYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKG  351 (695)
T ss_dssp             CEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred             eEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC
Confidence            2222223444 544433    57899999876542     21122 3457788888 66778888899988888654 35


Q ss_pred             ceEEEEeccccceeeeeeEecCCCceEE----eecCCCeEEEEECcCccceeeecc
Q 023772          217 ELLQEYKGHICKSFKTDCCLTNSDAHVT----GGSEDGYIYFWDLVDASVVAKFKA  268 (277)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~----sgs~d~~i~iwd~~~~~~~~~~~~  268 (277)
                      +..+.+..+. ........+++++..++    +....++|++||+.+++. ..++.
T Consensus       352 ~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~-~~l~~  405 (695)
T 2bkl_A          352 KPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS-ELWAK  405 (695)
T ss_dssp             CEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE-EEEEE
T ss_pred             CeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE-EEEec
Confidence            5555554331 12233345677777666    344568899999988763 34443

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.77  E-value=1.3e-17  Score=139.57  Aligned_cols=240  Identities=13%  Similarity=0.046  Sum_probs=155.5

Q ss_pred             EEEEEEeCCCCEEEEEeCC---CcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE
Q 023772           21 VLAARFNGDGNYCLSCGKD---RTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRK   97 (277)
Q Consensus        21 V~~~~~~~~~~~l~s~s~d---~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~   97 (277)
                      +..++|+|||++|+..+.+   ..|.+||+.+++.......+........|+|++++|+.++.++.+.+||+.+++....
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~  117 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI  117 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence            6778999999998876443   3688889888876544433332233478999999999999999999999998876655


Q ss_pred             eecccCceeE-------------------EEEecCCCEEEEE-----eCCCcEEEEeCccCCCcceEeeccccCcEEEEE
Q 023772           98 FRGHESEVNA-------------------VKFNEYSSVVVSA-----GYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVC  153 (277)
Q Consensus        98 ~~~h~~~v~~-------------------i~~~~~~~~l~s~-----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  153 (277)
                      +..+......                   +.++|+++.++..     ..+..|.+||+.......  .. .....+..+.
T Consensus       118 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~--~~-~~~~~~~~~~  194 (396)
T 3c5m_A          118 YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEV--IH-QDTAWLGHPI  194 (396)
T ss_dssp             EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEE--EE-EESSCEEEEE
T ss_pred             EecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEe--ec-cCCcccccce
Confidence            5444332222                   2345666655443     356789999987643222  22 3344555666


Q ss_pred             ecC---CeEEEeecC------CcEEEEEccCCccccc-CC--CCCeeEEEEeCCCCEEEEEecC-----CeEEEEECCCC
Q 023772          154 LTK---TEIIGGSVD------GTVRTFDIRVGRELSD-DL--GQPVNCISMSNDGNCILASCLD-----STLRLLDRSTG  216 (277)
Q Consensus       154 ~~~---~~~~~g~~d------~~i~i~d~~~~~~~~~-~~--~~~v~~~~~s~~~~~l~~~~~d-----~~i~~wd~~~~  216 (277)
                      +++   ..++..+.+      ..|.+||+..++.... ..  ...+..+.|+|+|++|+.++.+     +.|++||+.++
T Consensus       195 ~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g  274 (396)
T 3c5m_A          195 YRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL  274 (396)
T ss_dssp             EETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred             ECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCC
Confidence            665   235544333      3688888865432211 11  2257788999999988777554     45999999887


Q ss_pred             ceEEEEeccccceeeeeeEecC-CCceEEeec----------------CCCeEEEEECcCccceeeeccC
Q 023772          217 ELLQEYKGHICKSFKTDCCLTN-SDAHVTGGS----------------EDGYIYFWDLVDASVVAKFKAH  269 (277)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~-~~~~l~sgs----------------~d~~i~iwd~~~~~~~~~~~~h  269 (277)
                      +........   ...  ..++| ++++++.++                .++.|++||+.+++. ..+..|
T Consensus       275 ~~~~l~~~~---~~~--~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~  338 (396)
T 3c5m_A          275 ENEEVMVMP---PCS--HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-QKLCKH  338 (396)
T ss_dssp             CEEEEEECC---SEE--EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC-CEEEEC
T ss_pred             CeEEeeeCC---CCC--CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce-EEccCC
Confidence            654332211   111  56788 999887654                347899999988765 345444

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.76  E-value=1e-17  Score=151.12  Aligned_cols=232  Identities=10%  Similarity=0.067  Sum_probs=152.2

Q ss_pred             cEEEEEEeCCCCEEEEEeC---------CCcEEEEcCCCCeeE--EEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023772           20 AVLAARFNGDGNYCLSCGK---------DRTIRLWNPHRGIHI--KTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWD   88 (277)
Q Consensus        20 ~V~~~~~~~~~~~l~s~s~---------d~~v~iwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd   88 (277)
                      .|.+++|||||++|++++.         |+.|++||+.+++.+  ..+   ...+..++|+|++++|+.++ |+.|++||
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~  136 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQ  136 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEES
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEe
Confidence            3899999999999998876         799999999988762  122   25688999999999999886 78999999


Q ss_pred             CCCCceeEEe-ecccCce-----------------eEEEEecCCCEEEEEeCCC--------------------------
Q 023772           89 VSTGRVIRKF-RGHESEV-----------------NAVKFNEYSSVVVSAGYDQ--------------------------  124 (277)
Q Consensus        89 ~~~~~~~~~~-~~h~~~v-----------------~~i~~~~~~~~l~s~~~d~--------------------------  124 (277)
                      +.+++..+.. .++...|                 .++.|+||++.|++++.|.                          
T Consensus       137 ~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~  216 (719)
T 1z68_A          137 RPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPK  216 (719)
T ss_dssp             STTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCB
T ss_pred             CCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCC
Confidence            9888765422 2333222                 4799999999999988663                          


Q ss_pred             --------cEEEEeCccCCCc-ceEe-----eccccCcEEEEEecCCe--EEEeecC----CcEEEEE----ccCCcccc
Q 023772          125 --------SLRAWDCRSHSTE-PIQI-----IDSFQDSVMSVCLTKTE--IIGGSVD----GTVRTFD----IRVGRELS  180 (277)
Q Consensus       125 --------~i~iwd~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~--~~~g~~d----~~i~i~d----~~~~~~~~  180 (277)
                              +|++||+...... ....     +..+...+..+.++++.  +++....    ..|.+||    ..+++...
T Consensus       217 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~  296 (719)
T 1z68_A          217 AGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPK  296 (719)
T ss_dssp             TTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCG
T ss_pred             CCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEE
Confidence                    7889998754321 0111     12345556777777654  3332222    2488899    76654322


Q ss_pred             c------CCCCCee-----EEEEeCCCCEEEE--EecCC--eEEEEECCCCceEEEEeccccceeeeeeEecCCCceEE-
Q 023772          181 D------DLGQPVN-----CISMSNDGNCILA--SCLDS--TLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVT-  244 (277)
Q Consensus       181 ~------~~~~~v~-----~~~~s~~~~~l~~--~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-  244 (277)
                      .      .+...+.     .+.|+|+|+.|+.  +..++  .|++||+.+++. ..+..+...  .....++ +++.++ 
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt~~~~~--v~~~~~~-d~~~i~~  372 (719)
T 1z68_A          297 TQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQITSGKWE--AINIFRV-TQDSLFY  372 (719)
T ss_dssp             GGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECSCSSSC--EEEEEEE-CSSEEEE
T ss_pred             EEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-EecccCceE--EEEEEEE-eCCEEEE
Confidence            2      2233344     7899999986544  44555  577788877663 444433211  1223344 565555 


Q ss_pred             eecC----CCeEEEEECcC
Q 023772          245 GGSE----DGYIYFWDLVD  259 (277)
Q Consensus       245 sgs~----d~~i~iwd~~~  259 (277)
                      ++..    ++..++|.+..
T Consensus       373 ~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          373 SSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             EESCGGGCTTCBEEEEEEC
T ss_pred             EEecCCCCCceEEEEEEeC
Confidence            4444    48888998764

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.75  E-value=1e-15  Score=121.49  Aligned_cols=239  Identities=5%  Similarity=-0.054  Sum_probs=161.0

Q ss_pred             cEEEEEEeCCCCEEE-EEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe
Q 023772           20 AVLAARFNGDGNYCL-SCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKF   98 (277)
Q Consensus        20 ~V~~~~~~~~~~~l~-s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~   98 (277)
                      ...+++++++|++.+ +.+.++.|.+||..++........+...+.++++.++++.+++.. ++.|..||....... .+
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~  102 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VL  102 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-EC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-ee
Confidence            678899999999777 557889999999766543222223335688999999988766666 889999998765433 33


Q ss_pred             e-cccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec--CCeEEEeecCCcEEEEEccC
Q 023772           99 R-GHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT--KTEIIGGSVDGTVRTFDIRV  175 (277)
Q Consensus        99 ~-~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~d~~i~i~d~~~  175 (277)
                      . .....+.++++.++++++++...++.|.+|+......  .............+.++  +..+++...++.|.+||...
T Consensus       103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~--~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~  180 (270)
T 1rwi_B          103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ--TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES  180 (270)
T ss_dssp             CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC--EECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred             ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee--EeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC
Confidence            2 2335688999999999888888889999997643221  11111111123334444  34345555678999999876


Q ss_pred             CcccccC--CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEE
Q 023772          176 GRELSDD--LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIY  253 (277)
Q Consensus       176 ~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~  253 (277)
                      .......  ....+..++++++|..+++...++.|++||............+  ......+++.+++++.++.+.++.|+
T Consensus       181 ~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~--~~~p~~i~~~~~g~l~v~~~~~~~v~  258 (270)
T 1rwi_B          181 NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTG--LNTPLAVAVDSDRTVYVADRGNDRVV  258 (270)
T ss_dssp             CCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCS--CSCEEEEEECTTCCEEEEEGGGTEEE
T ss_pred             CceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCC--CCCceeEEECCCCCEEEEECCCCEEE
Confidence            5433221  1256889999999987777777889999999765433221111  12345567888898888888999999


Q ss_pred             EEECcCcccee
Q 023772          254 FWDLVDASVVA  264 (277)
Q Consensus       254 iwd~~~~~~~~  264 (277)
                      +++....+..+
T Consensus       259 ~~~~~~~~~~~  269 (270)
T 1rwi_B          259 KLTSLEHHHHH  269 (270)
T ss_dssp             EECCCGGGSCC
T ss_pred             EEcCCCccccC
Confidence            99998776543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.75  E-value=1.9e-14  Score=117.72  Aligned_cols=233  Identities=10%  Similarity=0.046  Sum_probs=159.9

Q ss_pred             eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCC----CcEEEEE
Q 023772           13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGD----RQIFYWD   88 (277)
Q Consensus        13 ~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d----~~v~~wd   88 (277)
                      .+..+...+.+++|+++|++++++..++.|.+||..+++.......+...+.+++++++++++++...+    +.|.+||
T Consensus        39 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d  118 (333)
T 2dg1_A           39 EISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAAT  118 (333)
T ss_dssp             EEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEEC
T ss_pred             EEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEe
Confidence            455666778999999999988888899999999998887665554566789999999999888877666    6899999


Q ss_pred             CCCCceeEEee--cccCceeEEEEecCCCEEEEEeC------CCcEEEEeCccCCCcceEeeccccCcEEEEEecCC--e
Q 023772           89 VSTGRVIRKFR--GHESEVNAVKFNEYSSVVVSAGY------DQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--E  158 (277)
Q Consensus        89 ~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  158 (277)
                      .++++....+.  .+...++.+.+.++++++++...      .+.|..+|......   ..+.........+.++++  .
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~i~~~~dg~~  195 (333)
T 2dg1_A          119 ENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV---TPIIQNISVANGIALSTDEKV  195 (333)
T ss_dssp             TTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE---EEEEEEESSEEEEEECTTSSE
T ss_pred             CCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEE---EEeecCCCcccceEECCCCCE
Confidence            98876543332  24457899999999988887654      24566666543222   111111223455666554  3


Q ss_pred             EE-EeecCCcEEEEEccC-Ccccc-------cCCC--CCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEecccc
Q 023772          159 II-GGSVDGTVRTFDIRV-GRELS-------DDLG--QPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHIC  227 (277)
Q Consensus       159 ~~-~g~~d~~i~i~d~~~-~~~~~-------~~~~--~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~  227 (277)
                      ++ +...++.|.+||+.. +..+.       ....  ..+..++++++|+++++...++.|++||. .++.+..+.....
T Consensus       196 l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~  274 (333)
T 2dg1_A          196 LWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGR  274 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTG
T ss_pred             EEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCC
Confidence            44 445678999999863 22111       0111  35778999999998888878899999998 4677777654321


Q ss_pred             ----ceeeeeeEecCCCceEEeecCC
Q 023772          228 ----KSFKTDCCLTNSDAHVTGGSED  249 (277)
Q Consensus       228 ----~~~~~~~~~~~~~~~l~sgs~d  249 (277)
                          ......+++++++..|..++.+
T Consensus       275 ~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          275 DEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             GGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             ccccccCcceEEECCCCCEEEEEeCc
Confidence                0134556778887666544443

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.75  E-value=3.9e-16  Score=127.85  Aligned_cols=247  Identities=12%  Similarity=0.092  Sum_probs=168.3

Q ss_pred             CcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe
Q 023772           19 GAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKF   98 (277)
Q Consensus        19 ~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~   98 (277)
                      ..|.++.|++++..+++.+.++.++.|   .+.....+..+...+.+++|+++++.++++..++.|.+||.++++.....
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~   82 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF   82 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred             cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence            446778899988888888889999999   45566677777778899999999998888888999999999888766544


Q ss_pred             ecccCceeEEEEecCCCEEEEEeCC----CcEEEEeCccCCCcceEeeccccCcEEEEEecCCe-EEEeec-------CC
Q 023772           99 RGHESEVNAVKFNEYSSVVVSAGYD----QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE-IIGGSV-------DG  166 (277)
Q Consensus        99 ~~h~~~v~~i~~~~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~-------d~  166 (277)
                      ..+...+.++.++++++++++...+    +.|.+||..................+..+.++++. ++.+..       .+
T Consensus        83 ~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~  162 (333)
T 2dg1_A           83 VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLG  162 (333)
T ss_dssp             ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCE
T ss_pred             eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCc
Confidence            4567789999999999988887766    68999998754332111101123345666666543 444433       24


Q ss_pred             cEEEEEccCCccccc-CCCCCeeEEEEeCCCCEEE-EEecCCeEEEEECCC-CceEEEEe-----ccccceeeeeeEecC
Q 023772          167 TVRTFDIRVGRELSD-DLGQPVNCISMSNDGNCIL-ASCLDSTLRLLDRST-GELLQEYK-----GHICKSFKTDCCLTN  238 (277)
Q Consensus       167 ~i~i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~-~~~~d~~i~~wd~~~-~~~~~~~~-----~~~~~~~~~~~~~~~  238 (277)
                      .|..+|...++.... .....++.++|+|+|++|+ +.+.++.|++||..+ +..+..+.     ...........++.+
T Consensus       163 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~  242 (333)
T 2dg1_A          163 GVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDS  242 (333)
T ss_dssp             EEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBT
T ss_pred             eEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECC
Confidence            555566544322111 1123578899999998654 445678999999964 33332221     000011334467788


Q ss_pred             CCceEEeecCCCeEEEEECcCccceeeeccC
Q 023772          239 SDAHVTGGSEDGYIYFWDLVDASVVAKFKAH  269 (277)
Q Consensus       239 ~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h  269 (277)
                      ++++.++...++.|++||. +++.+..+..+
T Consensus       243 ~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~  272 (333)
T 2dg1_A          243 DDNLYVAMYGQGRVLVFNK-RGYPIGQILIP  272 (333)
T ss_dssp             TCCEEEEEETTTEEEEECT-TSCEEEEEECT
T ss_pred             CCCEEEEEcCCCEEEEECC-CCCEEEEEEcC
Confidence            8888787777889999998 56666666543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.75  E-value=6.7e-17  Score=135.02  Aligned_cols=240  Identities=11%  Similarity=0.042  Sum_probs=156.1

Q ss_pred             eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEE--EcCCCCEEEEE-------------
Q 023772           14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVH--VTADNSKLISC-------------   78 (277)
Q Consensus        14 l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~--~~~~~~~l~t~-------------   78 (277)
                      +.+|...+....|+|||+.|+.++.++.+++||+.+++....+..+...+....  +++++.+++..             
T Consensus        76 t~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~  155 (388)
T 3pe7_A           76 TEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDW  155 (388)
T ss_dssp             CCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH
T ss_pred             eeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCccccccccc
Confidence            345655665778999999999999999999999999988777776666565444  48898888742             


Q ss_pred             ---------eCCCcEEEEECCCCceeEEeecccCceeEEEEec-CCCEEEEEeCC------CcEEEEeCccCCCcceEee
Q 023772           79 ---------GGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNE-YSSVVVSAGYD------QSLRAWDCRSHSTEPIQII  142 (277)
Q Consensus        79 ---------s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~  142 (277)
                               +.+..|.+||+.+++.. .+..+...+..+.|+| +++.|+.++.+      ..|.++|......  ....
T Consensus       156 ~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~--~~l~  232 (388)
T 3pe7_A          156 KKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM--RKVK  232 (388)
T ss_dssp             HHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC--EESC
T ss_pred             chhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce--EEee
Confidence                     24578999999988754 4445677889999999 99988877754      3677777654322  2222


Q ss_pred             cccc-CcEEEEEecC--CeEEEeec-CC----cEEEEEccCCccccc-CCCC------CeeEEEEeCCCCEEEEE-----
Q 023772          143 DSFQ-DSVMSVCLTK--TEIIGGSV-DG----TVRTFDIRVGRELSD-DLGQ------PVNCISMSNDGNCILAS-----  202 (277)
Q Consensus       143 ~~~~-~~~~~~~~~~--~~~~~g~~-d~----~i~i~d~~~~~~~~~-~~~~------~v~~~~~s~~~~~l~~~-----  202 (277)
                      .... ..+....+++  +.++..+. ++    .|.+||+.+++.... ....      ......|+|+|++|+..     
T Consensus       233 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  312 (388)
T 3pe7_A          233 THAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDS  312 (388)
T ss_dssp             CCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC--------
T ss_pred             eCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeecc
Confidence            2111 2344555654  44544332 22    399999987753211 1111      01223799999987754     


Q ss_pred             ----ecCCeEEEEECCCCceEEEEeccccc-e--------eeeeeEecCCCceEEee-cCCCeEEEEEC
Q 023772          203 ----CLDSTLRLLDRSTGELLQEYKGHICK-S--------FKTDCCLTNSDAHVTGG-SEDGYIYFWDL  257 (277)
Q Consensus       203 ----~~d~~i~~wd~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~l~sg-s~d~~i~iwd~  257 (277)
                          ..+..|++||+.+++. ..+..+... .        .....+++|+|+.|+.. ..+|...+|.+
T Consensus       313 ~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~  380 (388)
T 3pe7_A          313 GYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA  380 (388)
T ss_dssp             ----CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             ccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence                4566899999988765 344444220 0        13456789999887754 45666666644

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.73  E-value=2.2e-16  Score=132.04  Aligned_cols=235  Identities=12%  Similarity=-0.003  Sum_probs=150.2

Q ss_pred             EEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEE-------------------EEEcCCCCEEEEE-----
Q 023772           23 AARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRD-------------------VHVTADNSKLISC-----   78 (277)
Q Consensus        23 ~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~-------------------~~~~~~~~~l~t~-----   78 (277)
                      .+.|+|||++|+.++.++.|.+||+.+++....+..+......                   ..++|+++.++.+     
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~  164 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHT  164 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHT
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccC
Confidence            3789999999999999999999999988776666545443222                   3456777666543     


Q ss_pred             eCCCcEEEEECCCCceeEEeecccCceeEEEEec-CCCEEEEEeCC------CcEEEEeCccCCCcceEeeccc-cCcEE
Q 023772           79 GGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNE-YSSVVVSAGYD------QSLRAWDCRSHSTEPIQIIDSF-QDSVM  150 (277)
Q Consensus        79 s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~-~~~~~  150 (277)
                      ..+..|.+||+.+++..... .+...+..+.|+| +++.++..+.+      ..|.+||+.....  ....... ...+.
T Consensus       165 ~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~--~~l~~~~~~~~~~  241 (396)
T 3c5m_A          165 NPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV--RKIKEHAEGESCT  241 (396)
T ss_dssp             CCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC--EESSCCCTTEEEE
T ss_pred             CCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce--eEeeccCCCcccc
Confidence            45678999999988765443 5677889999999 78777666544      3588888754322  1222211 22344


Q ss_pred             EEEecC--CeEEEeecC-----CcEEEEEccCCcccccCCCCCeeEEEEeC-CCCEEEEEe----------------cCC
Q 023772          151 SVCLTK--TEIIGGSVD-----GTVRTFDIRVGRELSDDLGQPVNCISMSN-DGNCILASC----------------LDS  206 (277)
Q Consensus       151 ~~~~~~--~~~~~g~~d-----~~i~i~d~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~----------------~d~  206 (277)
                      .+.+++  ..++..+.+     +.|.+||+.+++........... +.|+| +|++++.++                .+.
T Consensus       242 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~  320 (396)
T 3c5m_A          242 HEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDP  320 (396)
T ss_dssp             EEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSEE-EEEECSSSSEEEEEECCC----------CCCCCC
T ss_pred             ceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCCC-CCccCCCCceEEEecCCcceeeccccccccCCCC
Confidence            555554  446655443     44999999876532211111233 89999 999887754                347


Q ss_pred             eEEEEECCCCceEEEEeccccce---------eeeeeEecCCCceEEeec-CCCe--EEEEECcCccc
Q 023772          207 TLRLLDRSTGELLQEYKGHICKS---------FKTDCCLTNSDAHVTGGS-EDGY--IYFWDLVDASV  262 (277)
Q Consensus       207 ~i~~wd~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~sgs-~d~~--i~iwd~~~~~~  262 (277)
                      .|++||+.+++.. .+..+....         ......++|+++.|+..+ .++.  |+.+|+..++.
T Consensus       321 ~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~  387 (396)
T 3c5m_A          321 FLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYK  387 (396)
T ss_dssp             EEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred             cEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccc
Confidence            8999999887653 344332100         123456899998877654 3554  44455555443

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.72  E-value=1.7e-15  Score=135.40  Aligned_cols=252  Identities=12%  Similarity=0.083  Sum_probs=160.0

Q ss_pred             ceeeccCCcEE---------EEEEe--CCCCE-EEEEeC-CCcEEEEcCC--C-CeeEEEEec-----cCccEEEEEEcC
Q 023772           12 NVLKGHEGAVL---------AARFN--GDGNY-CLSCGK-DRTIRLWNPH--R-GIHIKTYKS-----HGREVRDVHVTA   70 (277)
Q Consensus        12 ~~l~~H~~~V~---------~~~~~--~~~~~-l~s~s~-d~~v~iwd~~--~-~~~~~~~~~-----h~~~v~~~~~~~   70 (277)
                      ..+..|...+.         ...|+  |||++ |+..+. +..|.+|+..  . +. ...+..     |...+.+++|+|
T Consensus        61 ~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~sp  139 (662)
T 3azo_A           61 ESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLP  139 (662)
T ss_dssp             EESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEET
T ss_pred             ceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECC
Confidence            34555665655         56666  99998 765443 5666667765  2 33 444544     667889999999


Q ss_pred             CCCEEEEEeCC----------CcEEEEECCC------CceeEEee-cccCceeEEEEecCCCEEEEEeCCC--------c
Q 023772           71 DNSKLISCGGD----------RQIFYWDVST------GRVIRKFR-GHESEVNAVKFNEYSSVVVSAGYDQ--------S  125 (277)
Q Consensus        71 ~~~~l~t~s~d----------~~v~~wd~~~------~~~~~~~~-~h~~~v~~i~~~~~~~~l~s~~~d~--------~  125 (277)
                      ++++|+.++.|          ..|++||+.+      ++. ..+. .+...+..+.|+||++.|+.++.++        .
T Consensus       140 Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~  218 (662)
T 3azo_A          140 ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTE  218 (662)
T ss_dssp             TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEE
T ss_pred             CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcE
Confidence            99999998877          5899999988      554 4455 5667788899999999998887553        7


Q ss_pred             EEEEeCc-cCCC-cceEeeccccCcEEEEEecC--CeEEEeecCC--cEEEEEccCCcccc--cCCCC--------CeeE
Q 023772          126 LRAWDCR-SHST-EPIQIIDSFQDSVMSVCLTK--TEIIGGSVDG--TVRTFDIRVGRELS--DDLGQ--------PVNC  189 (277)
Q Consensus       126 i~iwd~~-~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~g~~d~--~i~i~d~~~~~~~~--~~~~~--------~v~~  189 (277)
                      |.+||+. +... ........+...+..+.+++  ..++++..++  .|..||+..++...  .....        .+..
T Consensus       219 i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~  298 (662)
T 3azo_A          219 LKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRW  298 (662)
T ss_dssp             EEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCS
T ss_pred             EEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCce
Confidence            9999987 3311 22223333345666677664  4466667777  55566654443211  11111        1567


Q ss_pred             EEEeCCCCEEEEEecCCeEEEE--ECCCCceEEEEeccccceeeeee-EecCCCceEEeecCCC--eEEEEECcCcccee
Q 023772          190 ISMSNDGNCILASCLDSTLRLL--DRSTGELLQEYKGHICKSFKTDC-CLTNSDAHVTGGSEDG--YIYFWDLVDASVVA  264 (277)
Q Consensus       190 ~~~s~~~~~l~~~~~d~~i~~w--d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~sgs~d~--~i~iwd~~~~~~~~  264 (277)
                      ++|+|++.+++++.. +.++||  |..+++ ++.+..+...  .... .+..+..++++++.+.  .|+.||+.+++...
T Consensus       299 ~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~--~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~  374 (662)
T 3azo_A          299 FAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTE--WAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRART  374 (662)
T ss_dssp             EEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCE--EEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEE
T ss_pred             EeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCe--EEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEE
Confidence            899999999999888 999999  665555 5666655322  1222 3333333444555554  45566777776543


Q ss_pred             eeccC
Q 023772          265 KFKAH  269 (277)
Q Consensus       265 ~~~~h  269 (277)
                      ....|
T Consensus       375 l~~~~  379 (662)
T 3azo_A          375 IGARH  379 (662)
T ss_dssp             EESCC
T ss_pred             eecCC
Confidence            33333

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.71  E-value=6e-15  Score=133.58  Aligned_cols=247  Identities=9%  Similarity=0.013  Sum_probs=157.4

Q ss_pred             ccCCcEEEEEEeCCCCEEEEEeCC-----CcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCc-------
Q 023772           16 GHEGAVLAARFNGDGNYCLSCGKD-----RTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQ-------   83 (277)
Q Consensus        16 ~H~~~V~~~~~~~~~~~l~s~s~d-----~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~-------   83 (277)
                      +|...+...+|||||++|+.++.+     ..|++||+.+++.+... .+...+..++|+|+ +.|+.++.|+.       
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~  237 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQ  237 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC-------
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccc
Confidence            454578899999999999876544     46999999998875432 12223367899999 98888876654       


Q ss_pred             -------EEEEECCCCc----eeEEeecccCceeEEEEecCCCEEEEEeCCC-----cEEEEeCccCCCc-ceEeecccc
Q 023772           84 -------IFYWDVSTGR----VIRKFRGHESEVNAVKFNEYSSVVVSAGYDQ-----SLRAWDCRSHSTE-PIQIIDSFQ  146 (277)
Q Consensus        84 -------v~~wd~~~~~----~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~-~~~~~~~~~  146 (277)
                             |++|++.++.    ++.....+...+.++.++|+++.|+..+.++     .|.+||+...... .........
T Consensus       238 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~  317 (741)
T 1yr2_A          238 ALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLK  317 (741)
T ss_dssp             -CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSS
T ss_pred             cCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCC
Confidence                   8999998765    2222223334588899999999888877554     7999998754212 222222222


Q ss_pred             CcEEEEEecCCeEEEeec----CCcEEEEEccCCc----ccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECC-CCc
Q 023772          147 DSVMSVCLTKTEIIGGSV----DGTVRTFDIRVGR----ELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRS-TGE  217 (277)
Q Consensus       147 ~~~~~~~~~~~~~~~g~~----d~~i~i~d~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~-~~~  217 (277)
                      .....+..++..++..+.    ++.|.+||+..+.    .+.......+..++++ ++..+++...|+..+||.+. +++
T Consensus       318 ~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~  396 (741)
T 1yr2_A          318 AQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGK  396 (741)
T ss_dssp             SCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSC
T ss_pred             ceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCC
Confidence            233334456677666554    3459999987641    2222223346667777 55667788889987777553 455


Q ss_pred             eEEEEeccccceeeeeeEecCCCceEE----eecCCCeEEEEECcCccceeeec
Q 023772          218 LLQEYKGHICKSFKTDCCLTNSDAHVT----GGSEDGYIYFWDLVDASVVAKFK  267 (277)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~l~----sgs~d~~i~iwd~~~~~~~~~~~  267 (277)
                      ..+.+.... ........+++++..++    +....++|+.||+.+++ ...++
T Consensus       397 ~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~-~~~l~  448 (741)
T 1yr2_A          397 PAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK-TTPWE  448 (741)
T ss_dssp             EEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE-EEECS
T ss_pred             ceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc-EEEEe
Confidence            555554321 12233445677776555    33456899999998876 33443

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.70  E-value=1.3e-14  Score=118.88  Aligned_cols=238  Identities=9%  Similarity=0.033  Sum_probs=159.6

Q ss_pred             cEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEee
Q 023772           20 AVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFR   99 (277)
Q Consensus        20 ~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~   99 (277)
                      ....+.+.. +++.++...++.|.+||..+++.+.++. .......++++++++.+++...++.|.+||+++++...++.
T Consensus        45 ~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~  122 (328)
T 3dsm_A           45 VAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIE  122 (328)
T ss_dssp             CEEEEEEET-TEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred             cceEEEEEC-CEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEE
Confidence            356777753 4555566678999999999999988885 34678999998888544554489999999999998887766


Q ss_pred             ccc-----CceeEEEEecCCCEEEEEe-CCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEeecC------
Q 023772          100 GHE-----SEVNAVKFNEYSSVVVSAG-YDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVD------  165 (277)
Q Consensus       100 ~h~-----~~v~~i~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~d------  165 (277)
                      ...     .....+.+ ..++++++.. .++.|.++|+.+...........   ....+.+++  ..+++...+      
T Consensus       123 ~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~---~p~~i~~~~dG~l~v~~~~~~~~~~~  198 (328)
T 3dsm_A          123 CPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGI---QPTSLVMDKYNKMWTITDGGYEGSPY  198 (328)
T ss_dssp             CTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSS---CBCCCEECTTSEEEEEBCCBCTTCSS
T ss_pred             cCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCC---CccceEEcCCCCEEEEECCCccCCcc
Confidence            433     13455677 4444455443 48999999987654322211111   112333343  334444333      


Q ss_pred             ----CcEEEEEccCCccccc---CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEE--EeccccceeeeeeEe
Q 023772          166 ----GTVRTFDIRVGRELSD---DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQE--YKGHICKSFKTDCCL  236 (277)
Q Consensus       166 ----~~i~i~d~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~--~~~~~~~~~~~~~~~  236 (277)
                          +.|.++|..+++....   ..+..++.++|+|+++.|..+..  .|.+||..+++....  +...  .......++
T Consensus       199 ~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~--~~~p~gi~v  274 (328)
T 3dsm_A          199 GYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFR--DTKYYGLTV  274 (328)
T ss_dssp             CBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCC--SSCEEEEEE
T ss_pred             ccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCC--CCceEEEEE
Confidence                6899999987754322   22346899999999998877654  899999988876421  1111  122344567


Q ss_pred             cC-CCceEEee----cCCCeEEEEECcCccceeeecc
Q 023772          237 TN-SDAHVTGG----SEDGYIYFWDLVDASVVAKFKA  268 (277)
Q Consensus       237 ~~-~~~~l~sg----s~d~~i~iwd~~~~~~~~~~~~  268 (277)
                      +| ++.+.++.    ..++.|.+||.. ++++.+++.
T Consensus       275 dp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~  310 (328)
T 3dsm_A          275 NPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV  310 (328)
T ss_dssp             CTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE
T ss_pred             cCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe
Confidence            87 55555666    678999999998 999988874

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.69  E-value=1.7e-14  Score=119.75  Aligned_cols=231  Identities=11%  Similarity=0.080  Sum_probs=145.4

Q ss_pred             EEEEeC--CCcEEEEc--CCCCeeEEE--Ee-ccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceeEEeecc-cC
Q 023772           33 CLSCGK--DRTIRLWN--PHRGIHIKT--YK-SHGREVRDVHVTADNSKLISCGGDRQIFYWDVS-TGRVIRKFRGH-ES  103 (277)
Q Consensus        33 l~s~s~--d~~v~iwd--~~~~~~~~~--~~-~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~-~~~~~~~~~~h-~~  103 (277)
                      ++.|+.  ++.|.+|+  ..+++....  .. .+...+..++|+|++++|++++.+ .|.+|++. ++++....... ..
T Consensus         5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g   83 (365)
T 1jof_A            5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGG   83 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCS
T ss_pred             EEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCC
Confidence            344443  24577665  456654322  21 233468899999999999998888 99999997 77765433211 12


Q ss_pred             ceeEEEEecCCCE--EEEEe-------------CCCcEEEEeCcc-CCCcc-eEeec-cccCcEEEEEecCC--eEEEee
Q 023772          104 EVNAVKFNEYSSV--VVSAG-------------YDQSLRAWDCRS-HSTEP-IQIID-SFQDSVMSVCLTKT--EIIGGS  163 (277)
Q Consensus       104 ~v~~i~~~~~~~~--l~s~~-------------~d~~i~iwd~~~-~~~~~-~~~~~-~~~~~~~~~~~~~~--~~~~g~  163 (277)
                      ....+.++|+++.  +++++             .++++.+|++.. ..... +.... .....+..+.++++  .++++.
T Consensus        84 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~  163 (365)
T 1jof_A           84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD  163 (365)
T ss_dssp             SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred             CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEc
Confidence            3455889999984  45553             689999999863 22111 11111 12345666666654  466554


Q ss_pred             -cCCcEEEEEcc-CCccc--cc---C-CCCCeeEEEEeCCCCEEEEEec-CCeEEEEECC--CCceE---EEEeccc---
Q 023772          164 -VDGTVRTFDIR-VGREL--SD---D-LGQPVNCISMSNDGNCILASCL-DSTLRLLDRS--TGELL---QEYKGHI---  226 (277)
Q Consensus       164 -~d~~i~i~d~~-~~~~~--~~---~-~~~~v~~~~~s~~~~~l~~~~~-d~~i~~wd~~--~~~~~---~~~~~~~---  226 (277)
                       .++.|++||+. +++..  ..   . .+..+..++|+|+|+++++++. ++.+.+|++.  ++++.   +.+....   
T Consensus       164 ~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~  243 (365)
T 1jof_A          164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI  243 (365)
T ss_dssp             TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC
T ss_pred             CCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCc
Confidence             46799999997 55421  11   1 2456899999999999887765 7899999864  56543   2222110   


Q ss_pred             -cce-------eeeeeE-ecCCCceEEeecCC-C-----eEEEEECc-Ccccee
Q 023772          227 -CKS-------FKTDCC-LTNSDAHVTGGSED-G-----YIYFWDLV-DASVVA  264 (277)
Q Consensus       227 -~~~-------~~~~~~-~~~~~~~l~sgs~d-~-----~i~iwd~~-~~~~~~  264 (277)
                       ...       ....++ ++|+|++|+++..+ +     .|++|++. ++++..
T Consensus       244 ~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~  297 (365)
T 1jof_A          244 PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEK  297 (365)
T ss_dssp             CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEE
T ss_pred             CCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEE
Confidence             001       345577 89999988766532 2     89999996 666543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.69  E-value=2.2e-14  Score=117.95  Aligned_cols=232  Identities=13%  Similarity=0.109  Sum_probs=145.3

Q ss_pred             CcEEEEEEeCCCCEEEEEe---------CCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCC---C--cE
Q 023772           19 GAVLAARFNGDGNYCLSCG---------KDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGD---R--QI   84 (277)
Q Consensus        19 ~~V~~~~~~~~~~~l~s~s---------~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d---~--~v   84 (277)
                      ..+...++  ||++++...         .++.|.+||+.+++.. .+    ..+....|+|++++|+.++.+   +  .|
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l   87 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI----ENATMPRISPDGKKIAFMRANEEKKVSEI   87 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence            44667777  888887542         3678999999887643 33    568899999999999887654   2  48


Q ss_pred             EEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCC---------------------------CcEEEEeCccCCCc
Q 023772           85 FYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYD---------------------------QSLRAWDCRSHSTE  137 (277)
Q Consensus        85 ~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d---------------------------~~i~iwd~~~~~~~  137 (277)
                      .+||+++++.......+ . +..+.|+|+++.|+.++.+                           ..|.+||+..... 
T Consensus        88 ~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~-  164 (347)
T 2gop_A           88 WVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV-  164 (347)
T ss_dssp             EEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE-
T ss_pred             EEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE-
Confidence            88898888765544433 3 8999999999988887642                           5788899875432 


Q ss_pred             ceEeeccccCcEEEEEecCCe-EEEeecC------C-cEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecC----
Q 023772          138 PIQIIDSFQDSVMSVCLTKTE-IIGGSVD------G-TVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLD----  205 (277)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~d------~-~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----  205 (277)
                       ...+.. . .+..+.++++. ++++..+      . ...+|.+..++.........+.  .++|+|++|+.++.+    
T Consensus       165 -~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~~~~~--~~spdg~~l~~~~~~~~~~  239 (347)
T 2gop_A          165 -IEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEKVSFY--AVDSDGERILLYGKPEKKY  239 (347)
T ss_dssp             -EEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEEESEE--EEEECSSCEEEEECCSSSC
T ss_pred             -EeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeCCCceEEeccCccee--eECCCCCEEEEEEccccCC
Confidence             011221 2 34455555554 3344433      1 3455544433221111112333  349999988877754    


Q ss_pred             ----CeEEEEECCCCceEEEEeccccceeeee-eEecCCCceEEeecCCCeEEEEECcCccceeeeccCccee
Q 023772          206 ----STLRLLDRSTGELLQEYKGHICKSFKTD-CCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVV  273 (277)
Q Consensus       206 ----~~i~~wd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v  273 (277)
                          ..|++||  +++......++..  .... ..++ ++ ++++++.++.+++| +.+++... +..+...|
T Consensus       240 ~~~~~~l~~~d--~~~~~~l~~~~~~--~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~-~~~~~~~v  304 (347)
T 2gop_A          240 MSEHNKLYIYD--GKEVMGILDEVDR--GVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKP-IAKGRHWI  304 (347)
T ss_dssp             CCSSCEEEEEC--SSCEEESSTTCCS--EEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEE-EECSSSEE
T ss_pred             ccccceEEEEC--CCceEeccccCCc--ccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEE-EecCCCeE
Confidence                3688888  5554433333321  2222 5577 77 88899999999999 88665543 33334443

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.68  E-value=2.3e-13  Score=110.22  Aligned_cols=251  Identities=10%  Similarity=0.121  Sum_probs=164.2

Q ss_pred             CCcCCccccccceeeccCCcEEEEEEeCCCCEEEE-------EeCCCcEEEEcCCCCeeEEEEe----ccCccEEEEEEc
Q 023772            1 MSVSDLPRTEANVLKGHEGAVLAARFNGDGNYCLS-------CGKDRTIRLWNPHRGIHIKTYK----SHGREVRDVHVT   69 (277)
Q Consensus         1 ~~~~~~~~~~~~~l~~H~~~V~~~~~~~~~~~l~s-------~s~d~~v~iwd~~~~~~~~~~~----~h~~~v~~~~~~   69 (277)
                      |.+..++.. ...+...-....+++|+++|.++++       ...++.|.+||..+++......    ++...+.+++++
T Consensus         1 ~~i~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~   79 (314)
T 1pjx_A            1 MEIPVIEPL-FTKVTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCD   79 (314)
T ss_dssp             CCSCEECCC-CEEEECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEEC
T ss_pred             CccccccHh-HhhhhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEe
Confidence            444444332 2234444556789999999998888       6788999999988876543222    144678999999


Q ss_pred             CC-CCEEEEEeCCCcEEEEECCCCceeEE-eec----ccCceeEEEEecCCCEEEEEeCC---------------CcEEE
Q 023772           70 AD-NSKLISCGGDRQIFYWDVSTGRVIRK-FRG----HESEVNAVKFNEYSSVVVSAGYD---------------QSLRA  128 (277)
Q Consensus        70 ~~-~~~l~t~s~d~~v~~wd~~~~~~~~~-~~~----h~~~v~~i~~~~~~~~l~s~~~d---------------~~i~i  128 (277)
                      ++ ++.+++. ..+.|.+||.+ ++.... ...    ....+.++.+.+++++.++...+               +.|..
T Consensus        80 ~~~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~  157 (314)
T 1pjx_A           80 RDANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYC  157 (314)
T ss_dssp             SSSSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEE
T ss_pred             cCCCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEE
Confidence            98 6545544 44579999998 665432 211    12457899999999988887665               56777


Q ss_pred             EeCccCCCcceEeeccccCcEEEEEec----CC--eEEEe-ecCCcEEEEEcc-CCc-----ccccCCC---CCeeEEEE
Q 023772          129 WDCRSHSTEPIQIIDSFQDSVMSVCLT----KT--EIIGG-SVDGTVRTFDIR-VGR-----ELSDDLG---QPVNCISM  192 (277)
Q Consensus       129 wd~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~g-~~d~~i~i~d~~-~~~-----~~~~~~~---~~v~~~~~  192 (277)
                      |+.. ...   ............+.++    ++  .++.+ ..++.|.+||+. .++     .+.....   ..+..+++
T Consensus       158 ~~~~-g~~---~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~  233 (314)
T 1pjx_A          158 FTTD-GQM---IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDF  233 (314)
T ss_dssp             ECTT-SCE---EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEE
T ss_pred             ECCC-CCE---EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEE
Confidence            7754 221   1111111223444555    44  34444 567899999976 332     1111111   45788999


Q ss_pred             eCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCc-eEEeecCCCeEEEEECcCc
Q 023772          193 SNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDA-HVTGGSEDGYIYFWDLVDA  260 (277)
Q Consensus       193 s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sgs~d~~i~iwd~~~~  260 (277)
                      +++|+.+++...++.|.+||..+++.+..+..+.  .....++++++++ +.++...++.|..|++...
T Consensus       234 d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          234 DEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPF--EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             BTTCCEEEEEETTTEEEEECTTCBSCSEEEECSS--SCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             CCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCC--CCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            9999988888788999999998777766665442  2345567788888 4455667789999998753

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.68  E-value=1.4e-12  Score=104.50  Aligned_cols=240  Identities=9%  Similarity=0.027  Sum_probs=164.7

Q ss_pred             eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEE-eccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 023772           14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTY-KSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTG   92 (277)
Q Consensus        14 l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~   92 (277)
                      +..+...+.+++++++|++.++...++.|.+||.. +...... ..+...+.++++.+++...++...++.|..||.+ +
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g   87 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G   87 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence            34556789999999999988887778999999988 5433222 2345679999999999888887778899999986 3


Q ss_pred             ceeEEee--cccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC-eEE-EeecCCcE
Q 023772           93 RVIRKFR--GHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT-EII-GGSVDGTV  168 (277)
Q Consensus        93 ~~~~~~~--~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~g~~d~~i  168 (277)
                      +. ..+.  .....+.++.+.++++++++...++.|..||. ....... ........+..+..+++ .++ +...++.|
T Consensus        88 ~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i  164 (299)
T 2z2n_A           88 II-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREY-ELPNKGSYPSFITLGSDNALWFTENQNNAI  164 (299)
T ss_dssp             CE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEE-ECSSTTCCEEEEEECTTSCEEEEETTTTEE
T ss_pred             cE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEe-cCCCCCCCCceEEEcCCCCEEEEeCCCCEE
Confidence            32 2222  24557889999999998888777889999997 3322111 11222334566666644 344 44456889


Q ss_pred             EEEEccCCcccc--c-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEe
Q 023772          169 RTFDIRVGRELS--D-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTG  245 (277)
Q Consensus       169 ~i~d~~~~~~~~--~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  245 (277)
                      ..||. .++...  . .....+..++++++|..+++...++.|..||. +++.. .+...........+++.+++.+.++
T Consensus       165 ~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~  241 (299)
T 2z2n_A          165 GRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT-EFKIPTPNARPHAITAGAGIDLWFT  241 (299)
T ss_dssp             EEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECSTTCEEEE
T ss_pred             EEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE-EEECCCCCCCceeEEECCCCCEEEe
Confidence            99998 543221  1 12346789999999997777767889999999 66643 3322211223445667888887777


Q ss_pred             ecCCCeEEEEECcCccc
Q 023772          246 GSEDGYIYFWDLVDASV  262 (277)
Q Consensus       246 gs~d~~i~iwd~~~~~~  262 (277)
                      ...++.|..||. +++.
T Consensus       242 ~~~~~~i~~~d~-~g~~  257 (299)
T 2z2n_A          242 EWGANKIGRLTS-NNII  257 (299)
T ss_dssp             ETTTTEEEEEET-TTEE
T ss_pred             ccCCceEEEECC-CCce
Confidence            667889999998 4543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.67  E-value=6.3e-14  Score=114.74  Aligned_cols=206  Identities=12%  Similarity=0.121  Sum_probs=145.8

Q ss_pred             CccEEEEEEcCCCCEEEEEeCC------------------------CcEEEEECCCCceeEEee-cccCceeEEEEecCC
Q 023772           60 GREVRDVHVTADNSKLISCGGD------------------------RQIFYWDVSTGRVIRKFR-GHESEVNAVKFNEYS  114 (277)
Q Consensus        60 ~~~v~~~~~~~~~~~l~t~s~d------------------------~~v~~wd~~~~~~~~~~~-~h~~~v~~i~~~~~~  114 (277)
                      -+.+.+++++++++.+++.+.+                        ++|.+||.++++.+..+. .+-.....+++.+++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            3578999999999999888777                        479999999998877665 344578899999999


Q ss_pred             CEEEEEeCCCcEEEEeCccCCCcceEeec---------cccCcEEEEEecC---CeEEEee-cCCcEEEEEccCCccccc
Q 023772          115 SVVVSAGYDQSLRAWDCRSHSTEPIQIID---------SFQDSVMSVCLTK---TEIIGGS-VDGTVRTFDIRVGRELSD  181 (277)
Q Consensus       115 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---------~~~~~~~~~~~~~---~~~~~g~-~d~~i~i~d~~~~~~~~~  181 (277)
                      +++++...++.|++||..... ..+..+.         ........+.+++   ..+++.+ .++.|++||. .++.+..
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~-~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~~~~  180 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKE-GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKFVTQ  180 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSS-CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCEEEE
T ss_pred             CEEEEECCCCEEEEEeCCCCe-EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCEEEE
Confidence            999999899999999975431 1222221         2223456677765   2355554 5899999994 3432221


Q ss_pred             C--C----------CCCeeEEEEeCC-CCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecC------CCce
Q 023772          182 D--L----------GQPVNCISMSND-GNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN------SDAH  242 (277)
Q Consensus       182 ~--~----------~~~v~~~~~s~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~  242 (277)
                      .  .          -..+..++++|+ +..+++...++.|++||..+++.+..+............+++|      ++..
T Consensus       181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~  260 (329)
T 3fvz_A          181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKP  260 (329)
T ss_dssp             ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCC
T ss_pred             eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCE
Confidence            1  0          123789999998 7777888889999999999899888875432122223445666      3444


Q ss_pred             EEeecCCCeEEEEECcCccceeeec
Q 023772          243 VTGGSEDGYIYFWDLVDASVVAKFK  267 (277)
Q Consensus       243 l~sgs~d~~i~iwd~~~~~~~~~~~  267 (277)
                      .++.+.+..|++||..+++++..+.
T Consensus       261 ~v~~~~~~~v~~~~~~~g~~~~~~~  285 (329)
T 3fvz_A          261 YFGDQEPVQGFVMNFSSGEIIDVFK  285 (329)
T ss_dssp             CTTCSCCCCEEEEETTTCCEEEEEC
T ss_pred             EeccCCCcEEEEEEcCCCeEEEEEc
Confidence            4444566799999999999998874

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.66  E-value=3.4e-14  Score=117.88  Aligned_cols=236  Identities=11%  Similarity=0.043  Sum_probs=156.8

Q ss_pred             CCCEEEEEe------CCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEe----------CCCcEEEEECCCC
Q 023772           29 DGNYCLSCG------KDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCG----------GDRQIFYWDVSTG   92 (277)
Q Consensus        29 ~~~~l~s~s------~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s----------~d~~v~~wd~~~~   92 (277)
                      ++++++.+.      .|+.|.+||..+++.+.++..+..+  .++|+|+++++++++          .++.|.+||+.+.
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~   91 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL   91 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence            455555432      4789999999999988888876555  899999999999886          3678999999999


Q ss_pred             ceeEEeecc------cCceeEEEEecCCCEEEEEeC--CCcEEEEeCccCCCcceEe-eccccCcEEEEEec---CCeEE
Q 023772           93 RVIRKFRGH------ESEVNAVKFNEYSSVVVSAGY--DQSLRAWDCRSHSTEPIQI-IDSFQDSVMSVCLT---KTEII  160 (277)
Q Consensus        93 ~~~~~~~~h------~~~v~~i~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~  160 (277)
                      +.+.++...      ......+.++|++++++.+..  +++|.+||+.+...  +.. +.. .. ...+...   +..++
T Consensus        92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~--~~~~i~~-~~-~~~v~~~p~~~~~~~  167 (361)
T 2oiz_A           92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDY--VEDVTAA-AG-CWSVIPQPNRPRSFM  167 (361)
T ss_dssp             CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEE--EEEEGGG-TT-EEEEEECTTSSSEEE
T ss_pred             cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcE--EEEEecC-CC-cceeEEcCCCCeeEE
Confidence            888777532      234567999999999998874  68999999976422  222 211 11 1111222   24577


Q ss_pred             EeecCCcEEEEEccC-Cccc------cc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCce--EEEEeccc----
Q 023772          161 GGSVDGTVRTFDIRV-GREL------SD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGEL--LQEYKGHI----  226 (277)
Q Consensus       161 ~g~~d~~i~i~d~~~-~~~~------~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~--~~~~~~~~----  226 (277)
                      +.+.||.+.+|++.. ++..      .. ........+.+++++..++..+.++.++++|+.....  +..+....    
T Consensus       168 ~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~  247 (361)
T 2oiz_A          168 TICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDK  247 (361)
T ss_dssp             EEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHH
T ss_pred             EECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccc
Confidence            888899999998864 3322      00 0111112234467777777778899999999975532  22222110    


Q ss_pred             --c--ceeeeeeEecCCCceEEeecC-----------CCeEEEEECcCccceeeeccCc
Q 023772          227 --C--KSFKTDCCLTNSDAHVTGGSE-----------DGYIYFWDLVDASVVAKFKAHS  270 (277)
Q Consensus       227 --~--~~~~~~~~~~~~~~~l~sgs~-----------d~~i~iwd~~~~~~~~~~~~h~  270 (277)
                        .  ..-....+++++++.+..+..           ++.|.+||..+++.++++..+.
T Consensus       248 ~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~  306 (361)
T 2oiz_A          248 AKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD  306 (361)
T ss_dssp             HTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT
T ss_pred             ccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC
Confidence              0  000112467888777665432           3589999999999999998765

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.66  E-value=4.5e-14  Score=115.57  Aligned_cols=222  Identities=11%  Similarity=0.098  Sum_probs=152.4

Q ss_pred             eCCCcEEEEcCCCCeeEEEEe------ccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEE
Q 023772           37 GKDRTIRLWNPHRGIHIKTYK------SHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKF  110 (277)
Q Consensus        37 s~d~~v~iwd~~~~~~~~~~~------~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~  110 (277)
                      +.+++|.+||..+++....+.      ........+.+. +++.+++...++.|.+||.++++.+.++.. ......+++
T Consensus        14 ~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~   91 (328)
T 3dsm_A           14 YSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHF   91 (328)
T ss_dssp             SCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEE
T ss_pred             CCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEE
Confidence            348999999999987655431      112345677774 445556666789999999999999888853 456788999


Q ss_pred             ecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccc---cCcEEEEEecCCeEEEee--cCCcEEEEEccCCccccc-CCC
Q 023772          111 NEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSF---QDSVMSVCLTKTEIIGGS--VDGTVRTFDIRVGRELSD-DLG  184 (277)
Q Consensus       111 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~--~d~~i~i~d~~~~~~~~~-~~~  184 (277)
                      ++++++.++...++.|.+||+.+............   ......+.+....++++.  .++.|.++|+.+++.... ..+
T Consensus        92 ~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g  171 (328)
T 3dsm_A           92 LSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIG  171 (328)
T ss_dssp             EETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEECS
T ss_pred             eCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC
Confidence            88886555555899999999876543222111220   001122333566666555  488999999988764432 223


Q ss_pred             CCeeEEEEeCCCCEEEEEecC----------CeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEE
Q 023772          185 QPVNCISMSNDGNCILASCLD----------STLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYF  254 (277)
Q Consensus       185 ~~v~~~~~s~~~~~l~~~~~d----------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~i  254 (277)
                      .....+.++|+|++++++..+          +.|.++|..+++....+..... ......+++|+++++..+..  .|++
T Consensus       172 ~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g-~~p~~la~~~d~~~lyv~~~--~v~~  248 (328)
T 3dsm_A          172 IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLG-DWPSEVQLNGTRDTLYWINN--DIWR  248 (328)
T ss_dssp             SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTT-CCCEEEEECTTSCEEEEESS--SEEE
T ss_pred             CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCC-CCceeEEEecCCCEEEEEcc--EEEE
Confidence            456788999999877776654          7899999999988777653211 13455678998888877644  8999


Q ss_pred             EECcCccce
Q 023772          255 WDLVDASVV  263 (277)
Q Consensus       255 wd~~~~~~~  263 (277)
                      ||..++++.
T Consensus       249 ~d~~t~~~~  257 (328)
T 3dsm_A          249 MPVEADRVP  257 (328)
T ss_dssp             EETTCSSCC
T ss_pred             EECCCCcee
Confidence            999988764

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.66  E-value=5e-14  Score=127.56  Aligned_cols=208  Identities=11%  Similarity=0.035  Sum_probs=135.6

Q ss_pred             cceeeccCCc-----EEEEEEeCCCCEEEEEeCC---------CcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEE
Q 023772           11 ANVLKGHEGA-----VLAARFNGDGNYCLSCGKD---------RTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLI   76 (277)
Q Consensus        11 ~~~l~~H~~~-----V~~~~~~~~~~~l~s~s~d---------~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~   76 (277)
                      ...+.+|...     .....|||||++|+.++.+         +.+.+||+.+++.. .+..|...+...+|+|++++|+
T Consensus        49 ~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la  127 (740)
T 4a5s_A           49 SVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLA  127 (740)
T ss_dssp             EEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEE
T ss_pred             EEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEE
Confidence            3445666533     2447899999999998887         55679999998754 4566778899999999999998


Q ss_pred             EEeCCCcEEEEECCCCceeE-EeecccCce-----------------eEEEEecCCCEEEEEeCCC--------------
Q 023772           77 SCGGDRQIFYWDVSTGRVIR-KFRGHESEV-----------------NAVKFNEYSSVVVSAGYDQ--------------  124 (277)
Q Consensus        77 t~s~d~~v~~wd~~~~~~~~-~~~~h~~~v-----------------~~i~~~~~~~~l~s~~~d~--------------  124 (277)
                      .++ |+.|++||+.+++..+ +..++...+                 .++.|+||++.|+.++.|.              
T Consensus       128 ~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~  206 (740)
T 4a5s_A          128 YVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDE  206 (740)
T ss_dssp             EEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCST
T ss_pred             EEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCC
Confidence            875 6899999998877543 222333222                 3488999999999886443              


Q ss_pred             ----------------------cEEEEeCcc---CCCcceEeec------cccCcEEEEEecCCe--EEEee----cCCc
Q 023772          125 ----------------------SLRAWDCRS---HSTEPIQIID------SFQDSVMSVCLTKTE--IIGGS----VDGT  167 (277)
Q Consensus       125 ----------------------~i~iwd~~~---~~~~~~~~~~------~~~~~~~~~~~~~~~--~~~g~----~d~~  167 (277)
                                            +|++||+.+   ........+.      .+...+..+.++++.  ++...    .+..
T Consensus       207 ~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~  286 (740)
T 4a5s_A          207 SLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSV  286 (740)
T ss_dssp             TCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEE
T ss_pred             CCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEE
Confidence                                  366777765   3210111221      133445555555433  33322    2346


Q ss_pred             EEEEEccCCc----c--cc----cCCCCC-----eeEEEEeCCCCEEE-EEec-C--CeEEEEECCCCceEE
Q 023772          168 VRTFDIRVGR----E--LS----DDLGQP-----VNCISMSNDGNCIL-ASCL-D--STLRLLDRSTGELLQ  220 (277)
Q Consensus       168 i~i~d~~~~~----~--~~----~~~~~~-----v~~~~~s~~~~~l~-~~~~-d--~~i~~wd~~~~~~~~  220 (277)
                      |.+||+.+++    +  ..    .....-     .....|+|||+.|+ ..+. +  ..|++||...++..+
T Consensus       287 i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~  358 (740)
T 4a5s_A          287 MDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF  358 (740)
T ss_dssp             EEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE
T ss_pred             EEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe
Confidence            9999998876    1  11    112222     23678999999877 5553 3  368889998766543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.65  E-value=2e-13  Score=109.88  Aligned_cols=214  Identities=10%  Similarity=0.002  Sum_probs=143.6

Q ss_pred             CeeEEEEeccCccEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEE
Q 023772           50 GIHIKTYKSHGREVRDVHVTADNS-KLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRA  128 (277)
Q Consensus        50 ~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~i  128 (277)
                      +..+..+..+.....+++|+|+++ .++++..++.|..||.+++  ...+..+...+.+++++++++++++...++.|.+
T Consensus        17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~   94 (296)
T 3e5z_A           17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLER   94 (296)
T ss_dssp             TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred             CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEE
Confidence            344556666667789999999998 7778888999999999887  5667777788999999999999888777889999


Q ss_pred             EeCccCCCcceEee-ccc-cCcEEEEEecC--CeEEE----eec-------------CCcEEEEEccCCccc-ccCCCCC
Q 023772          129 WDCRSHSTEPIQII-DSF-QDSVMSVCLTK--TEIIG----GSV-------------DGTVRTFDIRVGREL-SDDLGQP  186 (277)
Q Consensus       129 wd~~~~~~~~~~~~-~~~-~~~~~~~~~~~--~~~~~----g~~-------------d~~i~i~d~~~~~~~-~~~~~~~  186 (277)
                      ||..+......... ... ...+..+.+++  ..+++    |+.             .+.|..+|.. ++.. .......
T Consensus        95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~  173 (296)
T 3e5z_A           95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVK  173 (296)
T ss_dssp             ECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSS
T ss_pred             EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCC
Confidence            99865432221111 000 11122344444  33444    331             2345555544 2211 1122346


Q ss_pred             eeEEEEeCCCCEEEEEecCCeEEEEECC-CCce---EEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccc
Q 023772          187 VNCISMSNDGNCILASCLDSTLRLLDRS-TGEL---LQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASV  262 (277)
Q Consensus       187 v~~~~~s~~~~~l~~~~~d~~i~~wd~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~  262 (277)
                      .+.++|+|+|+.+++.+.++.|++||+. ++++   ...+..+  .......++.++|++.++.  ++.|++||.. ++.
T Consensus       174 ~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~--~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~  248 (296)
T 3e5z_A          174 PNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVE--PGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDE  248 (296)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCS--SSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCE
T ss_pred             CccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCC--CCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCE
Confidence            7899999999988777788999999986 5554   2333111  2223446778888876665  7899999986 778


Q ss_pred             eeeeccCcc
Q 023772          263 VAKFKAHSL  271 (277)
Q Consensus       263 ~~~~~~h~~  271 (277)
                      +..+..+..
T Consensus       249 ~~~~~~~~~  257 (296)
T 3e5z_A          249 LGRVLTPQT  257 (296)
T ss_dssp             EEEEECSSC
T ss_pred             EEEEECCCC
Confidence            888776654

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.64  E-value=3.9e-13  Score=121.14  Aligned_cols=245  Identities=11%  Similarity=0.011  Sum_probs=154.6

Q ss_pred             CCCCEEEEEeCCC-----cEEEEcCCCCeeEEEEe------ccCccEEEEEEcCCCCEEEEEeCCC-----cEEEEECCC
Q 023772           28 GDGNYCLSCGKDR-----TIRLWNPHRGIHIKTYK------SHGREVRDVHVTADNSKLISCGGDR-----QIFYWDVST   91 (277)
Q Consensus        28 ~~~~~l~s~s~d~-----~v~iwd~~~~~~~~~~~------~h~~~v~~~~~~~~~~~l~t~s~d~-----~v~~wd~~~   91 (277)
                      |+|++++-...++     .+.+.+...+.....+.      +|...+..+.|+|++++|+.++.++     .|++||+++
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t  160 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG  160 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence            7888777543322     23333444443322221      2444688999999999998765543     899999999


Q ss_pred             CceeEEeecccCceeEEEEecCCCEEEEEeCCCc----------------EEEEeCccCCCcceEeecc--ccCcEEEEE
Q 023772           92 GRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQS----------------LRAWDCRSHSTEPIQIIDS--FQDSVMSVC  153 (277)
Q Consensus        92 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~----------------i~iwd~~~~~~~~~~~~~~--~~~~~~~~~  153 (277)
                      ++.......+ ..+.++.|+||++.|+.++.++.                |++|++.+...........  +......+.
T Consensus       161 g~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~  239 (710)
T 2xdw_A          161 AKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE  239 (710)
T ss_dssp             TEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEE
T ss_pred             CCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEE
Confidence            9876543322 23667999999999999988876                9999987654332333332  233345555


Q ss_pred             ecC--CeEEEeec-----CCcEEEEEccC------Cc-ccc--cCCCCCeeEEEEeCCCCEEEEEecC----CeEEEEEC
Q 023772          154 LTK--TEIIGGSV-----DGTVRTFDIRV------GR-ELS--DDLGQPVNCISMSNDGNCILASCLD----STLRLLDR  213 (277)
Q Consensus       154 ~~~--~~~~~g~~-----d~~i~i~d~~~------~~-~~~--~~~~~~v~~~~~s~~~~~l~~~~~d----~~i~~wd~  213 (277)
                      +++  ..++..+.     +..|.+||+..      +. .+.  ......+.. .|+|+|+.|+..+.+    ..|.+||+
T Consensus       240 ~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~  318 (710)
T 2xdw_A          240 LSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDF  318 (710)
T ss_dssp             ECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEET
T ss_pred             EcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeC
Confidence            554  45665543     56899999976      32 111  112223333 588899887766553    36999999


Q ss_pred             CCCc--eEEEEeccccceeeeeeEecCCCceEEeecCCCe--EEEEECcCccceeeeccCcceeE
Q 023772          214 STGE--LLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGY--IYFWDLVDASVVAKFKAHSLVVK  274 (277)
Q Consensus       214 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~--i~iwd~~~~~~~~~~~~h~~~v~  274 (277)
                      .++.  ..+.+..+..........+++++.+++++..|+.  |++||+.+++.++.+..|...|.
T Consensus       319 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~  383 (710)
T 2xdw_A          319 TDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVV  383 (710)
T ss_dssp             TSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEE
T ss_pred             CCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEE
Confidence            8764  2344444432223334556677888888888885  56678778887788877655443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.63  E-value=1.2e-13  Score=110.60  Aligned_cols=204  Identities=12%  Similarity=0.176  Sum_probs=141.7

Q ss_pred             cCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEee------cccCceeEEEEe-cCCCEEEEEeC-CCcEEEEe
Q 023772           59 HGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFR------GHESEVNAVKFN-EYSSVVVSAGY-DQSLRAWD  130 (277)
Q Consensus        59 h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~------~h~~~v~~i~~~-~~~~~l~s~~~-d~~i~iwd  130 (277)
                      +-..+.++++++++..+++...++.|.+||.+ ++.+..+.      .+...+..+++. ++++++++... ++.|.+||
T Consensus        28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d  106 (286)
T 1q7f_A           28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN  106 (286)
T ss_dssp             CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred             ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence            44578999999999988888889999999987 56665554      234578899994 67777776643 89999999


Q ss_pred             CccCCCcceEeec-cccCcEEEEEecCC--eEEEeecCCcEEEEEccCCccccc----CCCCCeeEEEEeCCCCEEEEEe
Q 023772          131 CRSHSTEPIQIID-SFQDSVMSVCLTKT--EIIGGSVDGTVRTFDIRVGRELSD----DLGQPVNCISMSNDGNCILASC  203 (277)
Q Consensus       131 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~g~~d~~i~i~d~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~  203 (277)
                      .. ..  ....+. ........+.++++  .+++...++.|.+||... +.+..    .....+..++++++|+.+++..
T Consensus       107 ~~-g~--~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~  182 (286)
T 1q7f_A          107 QY-GQ--FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVNDKQEIFISDN  182 (286)
T ss_dssp             TT-SC--EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred             CC-Cc--EEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CEEEEeCCCCccCCcEEEEECCCCCEEEEEC
Confidence            43 22  222222 12234556666543  355556678999999643 22211    1224688999999999888878


Q ss_pred             cCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCC-eEEEEECcCccceeeeccC
Q 023772          204 LDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDG-YIYFWDLVDASVVAKFKAH  269 (277)
Q Consensus       204 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~-~i~iwd~~~~~~~~~~~~h  269 (277)
                      .++.|++||.. ++.+..+...........+++++++.++++...++ .|++||. +++.+..+..+
T Consensus       183 ~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~  247 (286)
T 1q7f_A          183 RAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK  247 (286)
T ss_dssp             GGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES
T ss_pred             CCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc
Confidence            89999999984 56666665432123345567889998888887776 9999995 57777777654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.63  E-value=1.3e-12  Score=114.18  Aligned_cols=236  Identities=11%  Similarity=0.096  Sum_probs=164.2

Q ss_pred             CCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC--CCceeEEeecccCce
Q 023772           28 GDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS--TGRVIRKFRGHESEV  105 (277)
Q Consensus        28 ~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~--~~~~~~~~~~h~~~v  105 (277)
                      +.+.++++...+++|.++|..+++.+.++... ..+..+.++|+++++++++.|+.|.+||+.  +++.+.++..... .
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~-P  242 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE-A  242 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE-E
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC-C
Confidence            44557778889999999999999988888753 467799999999999999999999999995  7788887775443 4


Q ss_pred             eEEEEe----cCCCEEEEEeC-CCcEEEEeCccCCCcceEeecc----------ccC-cEEEEEecC--Ce-EEEeecCC
Q 023772          106 NAVKFN----EYSSVVVSAGY-DQSLRAWDCRSHSTEPIQIIDS----------FQD-SVMSVCLTK--TE-IIGGSVDG  166 (277)
Q Consensus       106 ~~i~~~----~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~----------~~~-~~~~~~~~~--~~-~~~g~~d~  166 (277)
                      ..+.++    |++++++.++. ++++.++|..+..  .+..+..          ++. .+..+..++  .. ++....+|
T Consensus       243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~--~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g  320 (567)
T 1qks_A          243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE--PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETG  320 (567)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC--EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred             ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc--EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCC
Confidence            679999    69998877765 5999999976543  2322211          111 233343332  22 44445668


Q ss_pred             cEEEEEccCCcccc---cCCCCCeeEEEEeCCCCEEEEEe-cCCeEEEEECCCCceEEEEec-cccce--eeeeeEecCC
Q 023772          167 TVRTFDIRVGRELS---DDLGQPVNCISMSNDGNCILASC-LDSTLRLLDRSTGELLQEYKG-HICKS--FKTDCCLTNS  239 (277)
Q Consensus       167 ~i~i~d~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~-~~~~~--~~~~~~~~~~  239 (277)
                      .|.++|......+.   ...+.....+.|+|+|++++++. .++.|.++|..+++++..+.. .....  .... .+.|+
T Consensus       321 ~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~~~p~  399 (567)
T 1qks_A          321 KILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-FVHPT  399 (567)
T ss_dssp             EEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-EEETT
T ss_pred             eEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-eECCC
Confidence            89999986543211   12334567889999999987765 578999999999988876653 11111  1122 24676


Q ss_pred             Cce-EEeec-CCCeEEEEECcC-------ccceeeecc
Q 023772          240 DAH-VTGGS-EDGYIYFWDLVD-------ASVVAKFKA  268 (277)
Q Consensus       240 ~~~-l~sgs-~d~~i~iwd~~~-------~~~~~~~~~  268 (277)
                      +.. .+++. .++.|.++|..+       .+.+++++.
T Consensus       400 ~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~  437 (567)
T 1qks_A          400 FGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPA  437 (567)
T ss_dssp             TEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC
T ss_pred             CCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEec
Confidence            444 44443 568999999988       567777764

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.62  E-value=7.8e-13  Score=109.28  Aligned_cols=239  Identities=11%  Similarity=0.088  Sum_probs=162.3

Q ss_pred             EEEEeCCCCEEEEEe----------CCCcEEEEcCCCCeeEEEEeccC-------ccEEEEEEcCCCCEEEEEeC--CCc
Q 023772           23 AARFNGDGNYCLSCG----------KDRTIRLWNPHRGIHIKTYKSHG-------REVRDVHVTADNSKLISCGG--DRQ   83 (277)
Q Consensus        23 ~~~~~~~~~~l~s~s----------~d~~v~iwd~~~~~~~~~~~~h~-------~~v~~~~~~~~~~~l~t~s~--d~~   83 (277)
                      .+.++|||++++.++          .++.|.+||..+++.+.++....       .....+.++|++++++.+..  ++.
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~  161 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA  161 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence            499999999888765          36789999999999888876422       24678999999999888763  689


Q ss_pred             EEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccc----cCcEE---EEEecC
Q 023772           84 IFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSF----QDSVM---SVCLTK  156 (277)
Q Consensus        84 v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~~~---~~~~~~  156 (277)
                      |.++|+++++.+.++.--..   ...+....+.+++.+.||++.+.++...... .......    ...+.   .+....
T Consensus       162 VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v-~~~~~~~~~~~~~~~~~~~~~~~~d  237 (386)
T 3sjl_D          162 VGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP-EITHTEVFHPEDEFLINHPAYSQKA  237 (386)
T ss_dssp             EEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSCEEEEECCSSSCC-EEEECCCCSCTTSCBCSCCEEETTT
T ss_pred             EEEEECCCCcEEEEEECCCc---ceeecCCCceeEEECCCCCEEEEECCCCCeE-EEeecceeccccccccccceeEcCC
Confidence            99999999999888753211   1223334556777788888888887652221 1111001    11111   111112


Q ss_pred             CeEEEeecCCcEEEEEccCCcc-cccC-------------CCCCeeEEEEeCCCCEEEEEec----------CCeEEEEE
Q 023772          157 TEIIGGSVDGTVRTFDIRVGRE-LSDD-------------LGQPVNCISMSNDGNCILASCL----------DSTLRLLD  212 (277)
Q Consensus       157 ~~~~~g~~d~~i~i~d~~~~~~-~~~~-------------~~~~v~~~~~s~~~~~l~~~~~----------d~~i~~wd  212 (277)
                      ..++-.+.+|++.+.|+..... +...             .......++++++++.+.....          .+.|.++|
T Consensus       238 G~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD  317 (386)
T 3sjl_D          238 GRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLD  317 (386)
T ss_dssp             TEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred             CcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEE
Confidence            2344456689999999865431 1100             0123445788999988877643          24799999


Q ss_pred             CCCCceEEEEeccccceeeeeeEecCCCc-eEEe-ecCCCeEEEEECcCccceeeecc
Q 023772          213 RSTGELLQEYKGHICKSFKTDCCLTNSDA-HVTG-GSEDGYIYFWDLVDASVVAKFKA  268 (277)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s-gs~d~~i~iwd~~~~~~~~~~~~  268 (277)
                      ..+++.++.+....   ....+.+++|++ +|++ ...++.|.++|..+++.+++++.
T Consensus       318 ~~t~kv~~~i~vg~---~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~  372 (386)
T 3sjl_D          318 AKTGERLAKFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ  372 (386)
T ss_dssp             TTTCCEEEEEEEEE---EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred             CCCCeEEEEEECCC---CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecC
Confidence            99999998876431   234567899986 5555 45689999999999999999984

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.62  E-value=4.1e-12  Score=105.68  Aligned_cols=233  Identities=7%  Similarity=-0.076  Sum_probs=152.2

Q ss_pred             EEeCCCCEEEEEeC--CC---cEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEe----------CCCcEEEEEC
Q 023772           25 RFNGDGNYCLSCGK--DR---TIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCG----------GDRQIFYWDV   89 (277)
Q Consensus        25 ~~~~~~~~l~s~s~--d~---~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s----------~d~~v~~wd~   89 (277)
                      ...+++++++.+..  ..   +|.+||..+++.+.++.....+  .+.++|++++++.+.          .++.|.+||.
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~  104 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP  104 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence            34478887777653  22   8899999999988888765444  999999999998875          3678999999


Q ss_pred             CCCceeEEeecc-------cCceeEEEEecCCCEEEEEeC--CCcEEEEeCccCCCcceEe-eccccCcEEEEEecCCeE
Q 023772           90 STGRVIRKFRGH-------ESEVNAVKFNEYSSVVVSAGY--DQSLRAWDCRSHSTEPIQI-IDSFQDSVMSVCLTKTEI  159 (277)
Q Consensus        90 ~~~~~~~~~~~h-------~~~v~~i~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  159 (277)
                      .+.+.+.++.--       ...-..+.++|++++++.++.  ++.|.++| .+...  ... +.. ...+......+..+
T Consensus       105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~--~~~~i~~-~~~~~~~~~~~~~~  180 (373)
T 2mad_H          105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSS--DDQLLSS-PTCYHIHPGAPSTF  180 (373)
T ss_pred             CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCE--EeEEcCC-CceEEEEeCCCceE
Confidence            998887765421       122347899999999998874  57899999 76532  222 111 11111111111112


Q ss_pred             EEee-----------------------------------------------cCCcEEEEEccCCcc-----cccC-----
Q 023772          160 IGGS-----------------------------------------------VDGTVRTFDIRVGRE-----LSDD-----  182 (277)
Q Consensus       160 ~~g~-----------------------------------------------~d~~i~i~d~~~~~~-----~~~~-----  182 (277)
                      ++..                                               ..+.+.+.|+.....     +...     
T Consensus       181 ~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~  260 (373)
T 2mad_H          181 YLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRK  260 (373)
T ss_pred             EEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCccc
Confidence            2222                                               233444445432210     0000     


Q ss_pred             ----CCCCeeEEEEeCCCCEEEEEec----------CCeEEEEECCCCceEEEEeccccceeeeeeEecCCCc-eEEeec
Q 023772          183 ----LGQPVNCISMSNDGNCILASCL----------DSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDA-HVTGGS  247 (277)
Q Consensus       183 ----~~~~v~~~~~s~~~~~l~~~~~----------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sgs  247 (277)
                          .......+.++|+++.+..+..          .+.|.++|..+++.+..+....   ......+++|++ +++++.
T Consensus       261 ~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~---~p~~i~~s~Dg~~~l~v~~  337 (373)
T 2mad_H          261 ADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH---DVDAISVAQDGGPDLYALS  337 (373)
T ss_pred             ccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC---CcCeEEECCCCCeEEEEEc
Confidence                0112334778999887777543          3579999999999988885432   234567899998 677766


Q ss_pred             -CCCeEEEEECcCccceeee
Q 023772          248 -EDGYIYFWDLVDASVVAKF  266 (277)
Q Consensus       248 -~d~~i~iwd~~~~~~~~~~  266 (277)
                       .++.|.+||..+++.++++
T Consensus       338 ~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          338 AGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             CCCCeEEEEECCCCCEEeee
Confidence             5899999999999999883

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.61  E-value=1.6e-12  Score=109.55  Aligned_cols=236  Identities=12%  Similarity=0.114  Sum_probs=156.2

Q ss_pred             CcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceeE
Q 023772           19 GAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDR--QIFYWDVSTGRVIR   96 (277)
Q Consensus        19 ~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~--~v~~wd~~~~~~~~   96 (277)
                      .....++|+++++++++...++.|++||..++........ ..... ++|+++++.|+.+..++  .|.+|+...+....
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~  208 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT  208 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence            4577899999999888878889999999988776655554 33344 99999999998888766  79999987665444


Q ss_pred             Ee----ecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEe--ecccc-CcEE-EEEecC--Ce-EEEeecC
Q 023772           97 KF----RGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQI--IDSFQ-DSVM-SVCLTK--TE-IIGGSVD  165 (277)
Q Consensus        97 ~~----~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~-~~~~-~~~~~~--~~-~~~g~~d  165 (277)
                      .+    .......++++++|++..|+.+..++.|..||...........  ..... .... .+.+++  .. +++...+
T Consensus       209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~  288 (409)
T 3hrp_A          209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL  288 (409)
T ss_dssp             EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred             EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence            43    2245667889999955555557778899999986543211100  11111 1101 444444  33 4555667


Q ss_pred             CcEEEEEccCCcccccCC---------------CCCeeEEEEeCCCCEEEEEe-cCCeEEEEECCCCceEEEEeccc---
Q 023772          166 GTVRTFDIRVGRELSDDL---------------GQPVNCISMSNDGNCILASC-LDSTLRLLDRSTGELLQEYKGHI---  226 (277)
Q Consensus       166 ~~i~i~d~~~~~~~~~~~---------------~~~v~~~~~s~~~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~~~---  226 (277)
                      +.|+.|+...........               -.....++++|+|+++++-. .++.|+.||+.+++. ..+.++.   
T Consensus       289 ~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~  367 (409)
T 3hrp_A          289 SSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVDVA  367 (409)
T ss_dssp             TEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTTCB
T ss_pred             CEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCC
Confidence            889999875421111000               12478899999999888877 889999999877764 4444431   


Q ss_pred             ----------cceeeeeeEecCCCceEEeecCCCeEEEEEC
Q 023772          227 ----------CKSFKTDCCLTNSDAHVTGGSEDGYIYFWDL  257 (277)
Q Consensus       227 ----------~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~  257 (277)
                                ........++.+++.+.++-..++.|+.+++
T Consensus       368 g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          368 SQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             SCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence                      0123445567777777777777777777665

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.61  E-value=1.1e-11  Score=99.40  Aligned_cols=235  Identities=9%  Similarity=0.067  Sum_probs=155.6

Q ss_pred             cCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEe--ccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 023772           17 HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYK--SHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRV   94 (277)
Q Consensus        17 H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~   94 (277)
                      +...+.+++++++|.+.++...++.|..||.. ++. ..+.  .....+..+++.+++..+++...++.|..||. +++.
T Consensus        55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~  131 (299)
T 2z2n_A           55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKI  131 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE
T ss_pred             ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCE
Confidence            44678899999999988887778899999976 432 3332  24557899999999988888777889999998 5544


Q ss_pred             eEE-eecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC-eEEEe-ecCCcEEEE
Q 023772           95 IRK-FRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT-EIIGG-SVDGTVRTF  171 (277)
Q Consensus        95 ~~~-~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g-~~d~~i~i~  171 (277)
                      ... ...+...+..+.+.+++++.++...++.|..||. ....... ........+..+.+++. .++.+ ..++.|..|
T Consensus       132 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~  209 (299)
T 2z2n_A          132 REYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEF-KIPTPASGPVGITKGNDDALWFVEIIGNKIGRI  209 (299)
T ss_dssp             EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEE-ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred             EEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEe-eCCCCCCcceeEEECCCCCEEEEccCCceEEEE
Confidence            322 2234456889999999988888777889999997 4322111 12222334556666543 24444 457889999


Q ss_pred             EccCCccccc---CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecC
Q 023772          172 DIRVGRELSD---DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSE  248 (277)
Q Consensus       172 d~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~  248 (277)
                      |. .++....   .....+.+++++++|+.+++...++.|..||. +++ +..+...........+++ +++.+.++.+ 
T Consensus       210 ~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-  284 (299)
T 2z2n_A          210 TT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-  284 (299)
T ss_dssp             CT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-
T ss_pred             CC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-
Confidence            98 5442211   12356889999999997666667889999998 454 334432111122344556 7777666655 


Q ss_pred             CCeEEEEECcCcc
Q 023772          249 DGYIYFWDLVDAS  261 (277)
Q Consensus       249 d~~i~iwd~~~~~  261 (277)
                      .+.+..++..+++
T Consensus       285 ~~~l~~~~~~~~~  297 (299)
T 2z2n_A          285 CDKIGKLTLIKDN  297 (299)
T ss_dssp             TTEEEEEEEC---
T ss_pred             CCcEEEEEcCccc
Confidence            5677777877654

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.58  E-value=1.5e-12  Score=117.10  Aligned_cols=241  Identities=12%  Similarity=0.080  Sum_probs=150.5

Q ss_pred             ccCCcEEEEEEeCCCCEEE-----EEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCC--------
Q 023772           16 GHEGAVLAARFNGDGNYCL-----SCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDR--------   82 (277)
Q Consensus        16 ~H~~~V~~~~~~~~~~~l~-----s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~--------   82 (277)
                      +|...+..++|||||++|+     +|+.+.+|++||+.+++.+.... +......++|+ +++.|+.++.+.        
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence            4667788999999999988     34444689999999998654311 11113578899 999998887774        


Q ss_pred             -----cEEEEECCCCc----eeEEeec-ccCceeEEEEecCCCEEEEEeC----CCcEEEEeCccCCCcceEeeccccCc
Q 023772           83 -----QIFYWDVSTGR----VIRKFRG-HESEVNAVKFNEYSSVVVSAGY----DQSLRAWDCRSHSTEPIQIIDSFQDS  148 (277)
Q Consensus        83 -----~v~~wd~~~~~----~~~~~~~-h~~~v~~i~~~~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~  148 (277)
                           .|++|++.++.    ++..... |...+.++.++|+++.++....    +..|.++|+.................
T Consensus       204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~  283 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD  283 (693)
T ss_dssp             -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred             cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence                 39999998764    3333333 5556778999999998754432    24789999876533333332222222


Q ss_pred             EEEEEecCCeEE-EeecC---CcEEEEEccCCcc--c--ccCCCCCeeEEEEeCCCCEEEEEecCC---eEEEEECCCCc
Q 023772          149 VMSVCLTKTEII-GGSVD---GTVRTFDIRVGRE--L--SDDLGQPVNCISMSNDGNCILASCLDS---TLRLLDRSTGE  217 (277)
Q Consensus       149 ~~~~~~~~~~~~-~g~~d---~~i~i~d~~~~~~--~--~~~~~~~v~~~~~s~~~~~l~~~~~d~---~i~~wd~~~~~  217 (277)
                      ...+...+..++ ....+   +.|..+|+..+..  +  ...+...+.  .|++++++|+....++   .|++||+..+ 
T Consensus       284 ~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-  360 (693)
T 3iuj_A          284 VSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK-  360 (693)
T ss_dssp             EEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-
T ss_pred             EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-
Confidence            223444555544 33333   5788899876543  1  122223333  8899999887766544   6889998744 


Q ss_pred             eEEEEeccccceeeeeeEecCCCceEEeecCC----CeEEEEECcCccc
Q 023772          218 LLQEYKGHICKSFKTDCCLTNSDAHVTGGSED----GYIYFWDLVDASV  262 (277)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d----~~i~iwd~~~~~~  262 (277)
                      ..+.+.... .........++++..++....+    +.++.||+.+++.
T Consensus       361 ~~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          361 RVREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             EEEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             eeEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence            444443211 1122233445666665544333    8899999987753

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.56  E-value=5e-13  Score=106.62  Aligned_cols=189  Identities=13%  Similarity=0.160  Sum_probs=136.6

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCceeEEeeccc-CceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccc-cCc
Q 023772           71 DNSKLISCGGDRQIFYWDVSTGRVIRKFRGHE-SEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSF-QDS  148 (277)
Q Consensus        71 ~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~-~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~  148 (277)
                      .++.|++++.|+.|.+||.++|+.+.++..+. ..+.++.+.|++++++  +.++.|..||. +..  .+..+... ...
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~--~~W~~~~~~~~~   78 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGR--ELWNIAAPAGCE   78 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSC--EEEEEECCTTCE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCC--EEEEEcCCCCcc
Confidence            45789999999999999999999999998776 4788999999999988  45788999997 432  22222221 123


Q ss_pred             EEEEEec--CCeEEEeec-CCcEEEEEccCCccccc-----C---CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCc
Q 023772          149 VMSVCLT--KTEIIGGSV-DGTVRTFDIRVGRELSD-----D---LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGE  217 (277)
Q Consensus       149 ~~~~~~~--~~~~~~g~~-d~~i~i~d~~~~~~~~~-----~---~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~  217 (277)
                      +..+.+.  ++.+++.+. ++.+..+|. .++.+..     .   .......+++.++|+++++...++.|..||.. |+
T Consensus        79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~  156 (276)
T 3no2_A           79 MQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ  156 (276)
T ss_dssp             EEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             ccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CC
Confidence            4444443  445666555 566666664 3432211     0   01234556789999999999999999999998 99


Q ss_pred             eEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccC
Q 023772          218 LLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAH  269 (277)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h  269 (277)
                      .+..+.....   .......+++..+++++.++.|..+|..+|+.+-++..+
T Consensus       157 ~~w~~~~~~~---~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~  205 (276)
T 3no2_A          157 LLNSVKLSGT---PFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNAN  205 (276)
T ss_dssp             EEEEEECSSC---CCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGG
T ss_pred             EEEEEECCCC---ccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCC
Confidence            9998876421   223455688899998888889999999999998887643

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.56  E-value=1.4e-11  Score=107.65  Aligned_cols=248  Identities=13%  Similarity=0.086  Sum_probs=164.8

Q ss_pred             cEEEEEEeCCCCEEEEEeCCCcEEEEcCC--CCeeEEEEeccCccEEEEEEc----CCCCEEEEEe-CCCcEEEEECCCC
Q 023772           20 AVLAARFNGDGNYCLSCGKDRTIRLWNPH--RGIHIKTYKSHGREVRDVHVT----ADNSKLISCG-GDRQIFYWDVSTG   92 (277)
Q Consensus        20 ~V~~~~~~~~~~~l~s~s~d~~v~iwd~~--~~~~~~~~~~h~~~v~~~~~~----~~~~~l~t~s-~d~~v~~wd~~~~   92 (277)
                      .+..+.|+|||+++++++.|+.|.+||+.  +++.+.++... .....++|+    |++++++++. .++++.++|..+.
T Consensus       198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~  276 (567)
T 1qks_A          198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL  276 (567)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC
T ss_pred             CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCC
Confidence            45689999999999999999999999995  77778887754 356899999    6999887765 4699999999888


Q ss_pred             ceeEEeec----------ccC---------------------------------------------ceeEEEEecCCCEE
Q 023772           93 RVIRKFRG----------HES---------------------------------------------EVNAVKFNEYSSVV  117 (277)
Q Consensus        93 ~~~~~~~~----------h~~---------------------------------------------~v~~i~~~~~~~~l  117 (277)
                      +++..+.-          |..                                             ....+.|+++++++
T Consensus       277 ~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~  356 (567)
T 1qks_A          277 EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYF  356 (567)
T ss_dssp             CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEE
T ss_pred             cEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEE
Confidence            77665431          101                                             12245688888887


Q ss_pred             EEEe-CCCcEEEEeCccCCCcceEee-c--cccC-cEEEEEecCCeE-EEee-cCCcEEEEEccCC-------cccccC-
Q 023772          118 VSAG-YDQSLRAWDCRSHSTEPIQII-D--SFQD-SVMSVCLTKTEI-IGGS-VDGTVRTFDIRVG-------RELSDD-  182 (277)
Q Consensus       118 ~s~~-~d~~i~iwd~~~~~~~~~~~~-~--~~~~-~~~~~~~~~~~~-~~g~-~d~~i~i~d~~~~-------~~~~~~-  182 (277)
                      +.+. .+++|.++|..+......... .  .|+. .+..+......+ +++. .+++|.++|....       +.+... 
T Consensus       357 ~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~  436 (567)
T 1qks_A          357 ITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFP  436 (567)
T ss_dssp             EEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE
T ss_pred             EEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEe
Confidence            6654 678899999886543222222 1  1222 233233332334 3443 4689999998762       222111 


Q ss_pred             -CCCCeeEEEEeCCCCEEEEEec-------CCeEEEEECCCC-----c-eEEEEe-c----c-ccceeeeeeEecCCCce
Q 023772          183 -LGQPVNCISMSNDGNCILASCL-------DSTLRLLDRSTG-----E-LLQEYK-G----H-ICKSFKTDCCLTNSDAH  242 (277)
Q Consensus       183 -~~~~v~~~~~s~~~~~l~~~~~-------d~~i~~wd~~~~-----~-~~~~~~-~----~-~~~~~~~~~~~~~~~~~  242 (277)
                       .+..-.-+.++|+++++.+...       .++|.++|..+.     . ....+. +    - ..........++++|++
T Consensus       437 ~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~  516 (567)
T 1qks_A          437 ALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTE  516 (567)
T ss_dssp             CSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSE
T ss_pred             cCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCE
Confidence             1222234678999999888652       358999998765     2 112222 0    0 01123455678999987


Q ss_pred             EEee--c---CCCeEEEEECcCccceeeecc
Q 023772          243 VTGG--S---EDGYIYFWDLVDASVVAKFKA  268 (277)
Q Consensus       243 l~sg--s---~d~~i~iwd~~~~~~~~~~~~  268 (277)
                      +..+  +   .++.|.++|..+++++++++.
T Consensus       517 ~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~  547 (567)
T 1qks_A          517 VWFSVWNGKDQESALVVVDDKTLELKHVIKD  547 (567)
T ss_dssp             EEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred             EEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence            6654  2   478999999999999999885

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.55  E-value=1.4e-12  Score=117.30  Aligned_cols=239  Identities=8%  Similarity=-0.061  Sum_probs=146.2

Q ss_pred             eCCCCEEEEEeCCC---cEEEEc--CCCCeeEEEEe------ccCccEEEEEEcCCCCEEE-----EEeCCCcEEEEECC
Q 023772           27 NGDGNYCLSCGKDR---TIRLWN--PHRGIHIKTYK------SHGREVRDVHVTADNSKLI-----SCGGDRQIFYWDVS   90 (277)
Q Consensus        27 ~~~~~~l~s~s~d~---~v~iwd--~~~~~~~~~~~------~h~~~v~~~~~~~~~~~l~-----t~s~d~~v~~wd~~   90 (277)
                      +++|++++-...++   .-.+|.  ...+.....+.      +|...+.++.|+|++++|+     .|+.+.+|++||++
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~  155 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD  155 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence            37888888665554   345564  33443333322      3555799999999999998     44556789999999


Q ss_pred             CCceeEEeecccCce--eEEEEecCCCEEEEEeCCCc-------------EEEEeCccCCCcceEeecc--ccCcEEEEE
Q 023772           91 TGRVIRKFRGHESEV--NAVKFNEYSSVVVSAGYDQS-------------LRAWDCRSHSTEPIQIIDS--FQDSVMSVC  153 (277)
Q Consensus        91 ~~~~~~~~~~h~~~v--~~i~~~~~~~~l~s~~~d~~-------------i~iwd~~~~~~~~~~~~~~--~~~~~~~~~  153 (277)
                      +++.+.  ..+...+  ..+.|+|+++.|+.++.|..             |++|++.+...+...+...  +...+..+.
T Consensus       156 tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~  233 (695)
T 2bkl_A          156 SGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSD  233 (695)
T ss_dssp             TCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEE
T ss_pred             CCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEE
Confidence            988651  1121222  67899999999999998876             9999987654332333332  233455566


Q ss_pred             ecC--CeEEEeecCC----cEEEEEccCCcccc-cCCCCCeeEEEEeCCCCEEEEEe---cCCeEEEEECCCCce--EEE
Q 023772          154 LTK--TEIIGGSVDG----TVRTFDIRVGRELS-DDLGQPVNCISMSNDGNCILASC---LDSTLRLLDRSTGEL--LQE  221 (277)
Q Consensus       154 ~~~--~~~~~g~~d~----~i~i~d~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~---~d~~i~~wd~~~~~~--~~~  221 (277)
                      +++  ..++..+.++    .|.++|...++... ......+....+ ++|.+++.+.   .++.|.+||+.++..  .+.
T Consensus       234 ~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~  312 (695)
T 2bkl_A          234 LSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKE  312 (695)
T ss_dssp             ECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEE
T ss_pred             ECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeE
Confidence            655  4466666555    56666654432211 112223444445 5566444443   357899999987653  233


Q ss_pred             EeccccceeeeeeEecCCCceEEeecCCCeEEEEECc-CccceeeeccC
Q 023772          222 YKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLV-DASVVAKFKAH  269 (277)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~-~~~~~~~~~~h  269 (277)
                      +..+..........++ ++.++++...|+..++|.+. +++....+..+
T Consensus       313 l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~  360 (695)
T 2bkl_A          313 IVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLP  360 (695)
T ss_dssp             EECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCS
T ss_pred             EecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCC
Confidence            3333211222334455 67788899999998888765 46555666544

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.55  E-value=2.6e-13  Score=112.47  Aligned_cols=168  Identities=13%  Similarity=0.088  Sum_probs=130.6

Q ss_pred             cEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCe-----------eEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023772           20 AVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI-----------HIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWD   88 (277)
Q Consensus        20 ~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~-----------~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd   88 (277)
                      ++..+++++...++++|+.| .+++|++....           ..... .+.. |+.++|  +++.|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            58899999999999999997 56669754322           11223 3556 999999  88888888 889999999


Q ss_pred             CCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCCcE
Q 023772           89 VSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTV  168 (277)
Q Consensus        89 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i  168 (277)
                      +.+.........|+.++.++.+.+.  .++.++.||++.+||+.......      ....+.+++++++.++.|..||++
T Consensus       113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~------~~~~Vs~v~WSpkG~~vg~~dg~i  184 (388)
T 1xip_A          113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ------LAQNVTSFDVTNSQLAVLLKDRSF  184 (388)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE------EEESEEEEEECSSEEEEEETTSCE
T ss_pred             chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc------ccCCceEEEEcCCceEEEEcCCcE
Confidence            9877666667778888988777654  38889999999999998654321      334788999999999999999999


Q ss_pred             EEEEccCCcc-----cc------c--CCCCCeeEEEEeCCCCEEEE
Q 023772          169 RTFDIRVGRE-----LS------D--DLGQPVNCISMSNDGNCILA  201 (277)
Q Consensus       169 ~i~d~~~~~~-----~~------~--~~~~~v~~~~~s~~~~~l~~  201 (277)
                      ++|+....+.     +.      .  .+...|.++.|.+++.++++
T Consensus       185 ~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          185 QSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            9998876552     21      1  13567999999999988876

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.54  E-value=9.1e-13  Score=104.33  Aligned_cols=197  Identities=6%  Similarity=-0.007  Sum_probs=137.9

Q ss_pred             CCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEe-ccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q 023772           18 EGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYK-SHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIR   96 (277)
Q Consensus        18 ~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~   96 (277)
                      ...+.+++++++|+++++.. ++.|.+||...+.. ..+. .....+..+++.++++.+++...++.|.+|+..+.....
T Consensus        66 ~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~  143 (270)
T 1rwi_B           66 LYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV  143 (270)
T ss_dssp             CCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE
T ss_pred             cCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe
Confidence            34677899999999776666 88999999876543 2332 233578999999999888887778899999866554332


Q ss_pred             EeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC-e-EEEeecCCcEEEEEcc
Q 023772           97 KFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT-E-IIGGSVDGTVRTFDIR  174 (277)
Q Consensus        97 ~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~g~~d~~i~i~d~~  174 (277)
                      ........+.++++.++++++++...++.|.+||......  .............+.++++ . +++...++.|.+||..
T Consensus       144 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~--~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~  221 (270)
T 1rwi_B          144 LPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ--VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG  221 (270)
T ss_dssp             CCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE--EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTT
T ss_pred             eccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce--EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCC
Confidence            2223334667899999999888877788999999765321  1111111234566666654 3 4444557899999986


Q ss_pred             CCcccccCC--CCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCce
Q 023772          175 VGRELSDDL--GQPVNCISMSNDGNCILASCLDSTLRLLDRSTGEL  218 (277)
Q Consensus       175 ~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~  218 (277)
                      .........  ...+.+++++++|+.+++...++.|+++++...+.
T Consensus       222 ~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          222 STTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             CSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred             CCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence            543322221  24688999999999888888999999999876543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.53  E-value=1.4e-10  Score=92.92  Aligned_cols=239  Identities=10%  Similarity=0.015  Sum_probs=161.4

Q ss_pred             ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEE-EeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 023772           16 GHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKT-YKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRV   94 (277)
Q Consensus        16 ~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~   94 (277)
                      .....+.++.++++|++.++...++.|.+||.. ++.... +..+...+.++++.+++...++...++.|..||.. ++.
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~   94 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF   94 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence            345678899999999988887788999999987 554332 22234678999999999888877778899999988 554


Q ss_pred             eE-EeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCe-EEEe-ecCCcEEEE
Q 023772           95 IR-KFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE-IIGG-SVDGTVRTF  171 (277)
Q Consensus        95 ~~-~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g-~~d~~i~i~  171 (277)
                      .. ........+.++++.++++++++...++.|..+|.. ...... ...........+..+++. ++.+ ..++.|..|
T Consensus        95 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~-~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~  172 (300)
T 2qc5_A           95 TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEY-DLPNKGSYPAFITLGSDNALWFTENQNNSIGRI  172 (300)
T ss_dssp             EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEE-ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred             EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEc-cCCCCCCCceeEEECCCCCEEEEecCCCeEEEE
Confidence            32 222234678899999999988887778899999875 322111 112123345566665432 4444 446789999


Q ss_pred             EccCCccccc---CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecC
Q 023772          172 DIRVGRELSD---DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSE  248 (277)
Q Consensus       172 d~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~  248 (277)
                      |. .++....   .....+..++++++|+.+++....+.|..||. +++... +............++.+++.+.++...
T Consensus       173 ~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~  249 (300)
T 2qc5_A          173 TN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISE-YDIPTPNARPHAITAGKNSEIWFTEWG  249 (300)
T ss_dssp             CT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECSTTCEEEEETT
T ss_pred             CC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEE-EECCCCCCCceEEEECCCCCEEEeccC
Confidence            87 4332211   12346789999999987777767788999998 555443 221111223445667788887777667


Q ss_pred             CCeEEEEECcCccc
Q 023772          249 DGYIYFWDLVDASV  262 (277)
Q Consensus       249 d~~i~iwd~~~~~~  262 (277)
                      ++.|..||. +++.
T Consensus       250 ~~~i~~~~~-~g~~  262 (300)
T 2qc5_A          250 ANQIGRITN-DNTI  262 (300)
T ss_dssp             TTEEEEECT-TSCE
T ss_pred             CCeEEEECC-CCcE
Confidence            789999998 4543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.53  E-value=9.9e-12  Score=104.38  Aligned_cols=237  Identities=11%  Similarity=0.059  Sum_probs=159.4

Q ss_pred             EEEEeCCCCEEEEEe----------CCCcEEEEcCCCCeeEEEEecc-------CccEEEEEEcCCCCEEEEEeC--CCc
Q 023772           23 AARFNGDGNYCLSCG----------KDRTIRLWNPHRGIHIKTYKSH-------GREVRDVHVTADNSKLISCGG--DRQ   83 (277)
Q Consensus        23 ~~~~~~~~~~l~s~s----------~d~~v~iwd~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~l~t~s~--d~~   83 (277)
                      .+.++|||++++.+.          .++.|.++|..+++.+.++.-.       ......+.++|++++++.+..  +++
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~  201 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA  201 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence            799999999888775          4679999999999988887532       234568999999999998864  578


Q ss_pred             EEEEECCCCceeEEeecccCceeEEEEecC-CCEEEEEeCCCcEEEEeCccCCCcce--EeeccccCc---EEEEEecCC
Q 023772           84 IFYWDVSTGRVIRKFRGHESEVNAVKFNEY-SSVVVSAGYDQSLRAWDCRSHSTEPI--QIIDSFQDS---VMSVCLTKT  157 (277)
Q Consensus        84 v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~---~~~~~~~~~  157 (277)
                      |.+.|+.+++.+.++.--..    ....|+ ...+++.+.||++.+.+.........  ..+.....+   ...+...+.
T Consensus       202 VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~  277 (426)
T 3c75_H          202 VGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSG  277 (426)
T ss_dssp             EEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTC
T ss_pred             EEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCC
Confidence            99999999998887763221    122232 24556666777777777633221100  001100111   112233445


Q ss_pred             eEEEeecCCcEEEEEccCCccc-----ccC---------CCCCeeEEEEeCCCCEEEEEec----------CCeEEEEEC
Q 023772          158 EIIGGSVDGTVRTFDIRVGREL-----SDD---------LGQPVNCISMSNDGNCILASCL----------DSTLRLLDR  213 (277)
Q Consensus       158 ~~~~g~~d~~i~i~d~~~~~~~-----~~~---------~~~~v~~~~~s~~~~~l~~~~~----------d~~i~~wd~  213 (277)
                      .++.....+.+.+.|+......     ...         .......++++|+++.++....          ++.|.++|.
T Consensus       278 ~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~  357 (426)
T 3c75_H          278 RLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNA  357 (426)
T ss_dssp             EEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEET
T ss_pred             EEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEEC
Confidence            5555566788989888543211     000         0112234789999887766542          357999999


Q ss_pred             CCCceEEEEeccccceeeeeeEecCCCc-eEEeec-CCCeEEEEECcCccceeee
Q 023772          214 STGELLQEYKGHICKSFKTDCCLTNSDA-HVTGGS-EDGYIYFWDLVDASVVAKF  266 (277)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sgs-~d~~i~iwd~~~~~~~~~~  266 (277)
                      .+.+.+..+....   ......++++++ ++++.. .++.|.++|..+++.++++
T Consensus       358 ~T~kvv~~I~vg~---~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          358 ETGERINKIELGH---EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             TTCCEEEEEEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             CCCeEEEEEECCC---CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            9999998886432   345567899998 777665 6999999999999999997

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.51  E-value=1.5e-12  Score=107.88  Aligned_cols=170  Identities=14%  Similarity=0.197  Sum_probs=126.9

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----------eeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEe
Q 023772           62 EVRDVHVTADNSKLISCGGDRQIFYWDVSTGR-----------VIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWD  130 (277)
Q Consensus        62 ~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~-----------~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd  130 (277)
                      +++.+++++...++++|+.+ .+++|+++..+           .... ..+.. |..++|  +++.|+.+ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~-~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWE-KEIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEE-EECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEE-eeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            68999999999999999998 56679875432           1122 23666 999999  88888888 889999999


Q ss_pred             CccCCCcceEeeccccCcEEEEEecCCeEEEeecCCcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecCCeEEE
Q 023772          131 CRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRL  210 (277)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~  210 (277)
                      +++...  ......+...+..+.+.+..+++++.||.|.+||+..+....  ....|+|++|||+|  ++.|..||.+++
T Consensus       113 v~sl~~--~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~--~~~~Vs~v~WSpkG--~~vg~~dg~i~~  186 (388)
T 1xip_A          113 LEELSE--FRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ--LAQNVTSFDVTNSQ--LAVLLKDRSFQS  186 (388)
T ss_dssp             SSSTTC--EEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE--EEESEEEEEECSSE--EEEEETTSCEEE
T ss_pred             chhhhc--cCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc--ccCCceEEEEcCCc--eEEEEcCCcEEE
Confidence            876542  222334455566766666669999999999999998665432  44689999999999  688999999999


Q ss_pred             EECCCCce--EEEEe---------ccccceeeeeeEecCCCceEEe
Q 023772          211 LDRSTGEL--LQEYK---------GHICKSFKTDCCLTNSDAHVTG  245 (277)
Q Consensus       211 wd~~~~~~--~~~~~---------~~~~~~~~~~~~~~~~~~~l~s  245 (277)
                      |+...+..  .+++.         +|  .......++.+++.++++
T Consensus       187 ~~~~~~~~~~k~~I~~Pp~~~~~~~~--~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          187 FAWRNGEMEKQFEFSLPSELEELPVE--EYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEEETTEEEEEEEECCCHHHHTSCTT--TSEEEEEEESSSSEEEEE
T ss_pred             EcCCCccccccceecCCcccccccCC--CeeEEEEEEecCCeEEEE
Confidence            99877664  45551         13  244566677778887775

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.49  E-value=2.6e-14  Score=118.86  Aligned_cols=191  Identities=14%  Similarity=0.052  Sum_probs=111.3

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEE
Q 023772           71 DNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVM  150 (277)
Q Consensus        71 ~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  150 (277)
                      ++.++++++.|+.|..||.++|+.+.++..  .++.+..+..++.++++++.|+.++.||..+++......... ...+.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~-~~~~~   84 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTI-PELVQ   84 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCH-HHHHT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccC-ccccc
Confidence            567899999999999999999999988876  455555556677788888899999999987654321111110 00000


Q ss_pred             -EEEe-cCCeEEEeecCCcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccc
Q 023772          151 -SVCL-TKTEIIGGSVDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICK  228 (277)
Q Consensus       151 -~~~~-~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~  228 (277)
                       .... ....+++|+.|+.+..||..+++.........  ...++|++..+++++.|+.|+.||.++++.+..+..... 
T Consensus        85 ~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~--~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~-  161 (369)
T 2hz6_A           85 ASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF--ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDY-  161 (369)
T ss_dssp             TCSCC-----CCCCEEEEEEEEECCC------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEEE-
T ss_pred             cCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC--cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecccc-
Confidence             0011 23457778889999999999887654322111  234567888899999999999999999988766653211 


Q ss_pred             eeeeeeEecCCC---ceEEeecCCCeEEEEECcCccceeeeccCc
Q 023772          229 SFKTDCCLTNSD---AHVTGGSEDGYIYFWDLVDASVVAKFKAHS  270 (277)
Q Consensus       229 ~~~~~~~~~~~~---~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~  270 (277)
                         ...++..+.   ..++.++.||.|+.||..+|+.+-+++..+
T Consensus       162 ---~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~  203 (369)
T 2hz6_A          162 ---AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYAS  203 (369)
T ss_dssp             ---CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSS
T ss_pred             ---cCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCC
Confidence               112223321   457778899999999999999887766433

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.48  E-value=9.1e-12  Score=111.39  Aligned_cols=237  Identities=13%  Similarity=0.091  Sum_probs=159.0

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCeeEEEEecc-C----ccEEEEEEcCCCCEEEEEeC------CCcEEEEECCCCceeEEe
Q 023772           30 GNYCLSCGKDRTIRLWNPHRGIHIKTYKSH-G----REVRDVHVTADNSKLISCGG------DRQIFYWDVSTGRVIRKF   98 (277)
Q Consensus        30 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h-~----~~v~~~~~~~~~~~l~t~s~------d~~v~~wd~~~~~~~~~~   98 (277)
                      +..++.++.|+.|..+|..+|+.+-.+..+ .    ..+.+.-... +..++.++.      ++.|..+|.++|+.+.++
T Consensus       128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~-~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~  206 (677)
T 1kb0_A          128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF-KGKVIIGNGGAEYGVRGYITAYDAETGERKWRW  206 (677)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEE-CCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence            567888899999999999999998888754 2    1222211112 345555543      799999999999998777


Q ss_pred             ecccCc--------------------------------eeEEEEecCCCEEEEEeCCC-------------------cEE
Q 023772           99 RGHESE--------------------------------VNAVKFNEYSSVVVSAGYDQ-------------------SLR  127 (277)
Q Consensus        99 ~~h~~~--------------------------------v~~i~~~~~~~~l~s~~~d~-------------------~i~  127 (277)
                      ......                                ...+.+.+++.+++.++.++                   .|.
T Consensus       207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~  286 (677)
T 1kb0_A          207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV  286 (677)
T ss_dssp             ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred             ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEE
Confidence            542211                                13467888888888887764                   488


Q ss_pred             EEeCccCCCcceEeeccc--------cCcE-EEEEecC---CeEEEeecCCcEEEEEccCCcccccCC------------
Q 023772          128 AWDCRSHSTEPIQIIDSF--------QDSV-MSVCLTK---TEIIGGSVDGTVRTFDIRVGRELSDDL------------  183 (277)
Q Consensus       128 iwd~~~~~~~~~~~~~~~--------~~~~-~~~~~~~---~~~~~g~~d~~i~i~d~~~~~~~~~~~------------  183 (277)
                      .+|..++..........+        ..++ .....++   ..++.++.+|.+.++|..+++.+....            
T Consensus       287 AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~  366 (677)
T 1kb0_A          287 ALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDK  366 (677)
T ss_dssp             EECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECT
T ss_pred             EEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCC
Confidence            888876643322222111        1111 2222344   457888999999999998887542110            


Q ss_pred             -CC------------------------CeeEEEEeCCCCEEEEEecC---------------------------------
Q 023772          184 -GQ------------------------PVNCISMSNDGNCILASCLD---------------------------------  205 (277)
Q Consensus       184 -~~------------------------~v~~~~~s~~~~~l~~~~~d---------------------------------  205 (277)
                       ..                        ....++|+|++..+++...+                                 
T Consensus       367 ~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~  446 (677)
T 1kb0_A          367 HGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFF  446 (677)
T ss_dssp             TSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEE
T ss_pred             CCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccccc
Confidence             00                        11257899988887775432                                 


Q ss_pred             ----------CeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCc
Q 023772          206 ----------STLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHS  270 (277)
Q Consensus       206 ----------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~  270 (277)
                                +.|..||+.+++.+..+.... .  .....+...+.+++.|+.||.+++||..+++++.+++...
T Consensus       447 ~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~--~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~  518 (677)
T 1kb0_A          447 NAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS-P--WNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT  518 (677)
T ss_dssp             CSSCCCSCCEEEEEEEETTTTEEEEEEEESS-S--CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             ccccCCCCCccEEEEEeCCCCcEEeecCCCC-C--CcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCC
Confidence                      789999999999988775431 1  1122345567788889999999999999999999988443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.47  E-value=4.8e-10  Score=89.69  Aligned_cols=233  Identities=6%  Similarity=0.006  Sum_probs=152.9

Q ss_pred             cCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEE-EeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 023772           17 HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKT-YKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVI   95 (277)
Q Consensus        17 H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~   95 (277)
                      +...+..+.++++|.+.++...++.|..||.. ++.... .......+.++++.+++..+++...++.|..+|.+ ++..
T Consensus        60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~  137 (300)
T 2qc5_A           60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY  137 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE
T ss_pred             CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE
Confidence            34678899999999988887778899999987 554322 22234678999999999888887778899999987 5544


Q ss_pred             E-EeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC-eEEEee-cCCcEEEEE
Q 023772           96 R-KFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT-EIIGGS-VDGTVRTFD  172 (277)
Q Consensus        96 ~-~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~-~d~~i~i~d  172 (277)
                      . .+......+..+.+.+++++.++...++.|..+|. ...... .........+..+.++++ .++.+. ..+.|..||
T Consensus       138 ~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~  215 (300)
T 2qc5_A          138 EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRIT  215 (300)
T ss_dssp             EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred             EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEc
Confidence            2 22333457789999999998877777888999987 332211 111122234556666543 344444 456799999


Q ss_pred             ccCCccccc---CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCC
Q 023772          173 IRVGRELSD---DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSED  249 (277)
Q Consensus       173 ~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d  249 (277)
                      . .++....   .....+.+++++++|+.+++...++.|..||. +++.. .+............+..++|.+.++.. .
T Consensus       216 ~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~  291 (300)
T 2qc5_A          216 T-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C  291 (300)
T ss_dssp             T-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S
T ss_pred             C-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C
Confidence            8 3332111   12346789999999997777666789999998 45433 332221112234456677777666554 4


Q ss_pred             CeEEEEECc
Q 023772          250 GYIYFWDLV  258 (277)
Q Consensus       250 ~~i~iwd~~  258 (277)
                       .|..+|.+
T Consensus       292 -~i~~~~p~  299 (300)
T 2qc5_A          292 -KIGKLNLN  299 (300)
T ss_dssp             -EEEEEEEC
T ss_pred             -ceEEeCCC
Confidence             66666653

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.46  E-value=8.7e-11  Score=94.92  Aligned_cols=231  Identities=11%  Similarity=0.077  Sum_probs=149.4

Q ss_pred             cceeeccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 023772           11 ANVLKGHEGAVLAARFNGDGN-YCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDV   89 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~   89 (277)
                      ...+..+........|+++|+ ++++...++.|..|+. ++. ...+..+...+..++++++++.+++...++.|..|+.
T Consensus        37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~  114 (305)
T 3dr2_A           37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDA  114 (305)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred             eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence            334555566678899999998 6667788899999997 454 4556666778999999999987776666788999998


Q ss_pred             CCCceeEEeecc-----cCceeEEEEecCCCEEEE----EeC-------------CCcEEEEeCccCCCcceEeeccccC
Q 023772           90 STGRVIRKFRGH-----ESEVNAVKFNEYSSVVVS----AGY-------------DQSLRAWDCRSHSTEPIQIIDSFQD  147 (277)
Q Consensus        90 ~~~~~~~~~~~h-----~~~v~~i~~~~~~~~l~s----~~~-------------d~~i~iwd~~~~~~~~~~~~~~~~~  147 (277)
                      + ++.. .+..+     ...++.+.+.+++++.+|    |..             .+.|..+|.........  .  ...
T Consensus       115 ~-g~~~-~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~--~--~~~  188 (305)
T 3dr2_A          115 D-GQAH-LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRM--A--DLD  188 (305)
T ss_dssp             T-SCEE-EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEE--E--EES
T ss_pred             C-CCEE-EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEE--e--cCC
Confidence            6 5432 22211     234678999999998886    321             24577777654433222  1  122


Q ss_pred             cEEEEEecC--CeEEEeecC------CcEEEEEccCCc-----ccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECC
Q 023772          148 SVMSVCLTK--TEIIGGSVD------GTVRTFDIRVGR-----ELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRS  214 (277)
Q Consensus       148 ~~~~~~~~~--~~~~~g~~d------~~i~i~d~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~  214 (277)
                      ....+.+++  ..++.+...      +.|..||+....     .+..........++++++|++. ++..+ .|.+||. 
T Consensus       189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lw-v~~~~-gv~~~~~-  265 (305)
T 3dr2_A          189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLW-SSSGT-GVCVFDS-  265 (305)
T ss_dssp             SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEE-ECCSS-EEEEECT-
T ss_pred             CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEE-EecCC-cEEEECC-
Confidence            334455554  446655544      689999986432     1111112345678999999954 44444 5999998 


Q ss_pred             CCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEE
Q 023772          215 TGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWD  256 (277)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd  256 (277)
                      .++.+..+....   ....++++++++.|..++.++ ++.++
T Consensus       266 ~g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~-l~~~~  303 (305)
T 3dr2_A          266 DGQLLGHIPTPG---TASNCTFDQAQQRLFITGGPC-LWMLP  303 (305)
T ss_dssp             TSCEEEEEECSS---CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred             CCCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence            477777776543   245567888887777666554 43333

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.46  E-value=2e-11  Score=109.32  Aligned_cols=236  Identities=11%  Similarity=0.059  Sum_probs=157.2

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCeeEEEEecc--C---ccEEEEEEcCCCCEEEEEe------CCCcEEEEECCCCceeEEe
Q 023772           30 GNYCLSCGKDRTIRLWNPHRGIHIKTYKSH--G---REVRDVHVTADNSKLISCG------GDRQIFYWDVSTGRVIRKF   98 (277)
Q Consensus        30 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h--~---~~v~~~~~~~~~~~l~t~s------~d~~v~~wd~~~~~~~~~~   98 (277)
                      +..++.++.|+.|..+|..+|+.+-.+...  .   ..+.+.-...++ .++.++      .++.|..||.++|+.+.++
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  199 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRF  199 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence            457888889999999999999988776542  1   111111111144 444443      3789999999999998776


Q ss_pred             eccc-------------------------------CceeEEEEecCCCEEEEEeCCCc-------------------EEE
Q 023772           99 RGHE-------------------------------SEVNAVKFNEYSSVVVSAGYDQS-------------------LRA  128 (277)
Q Consensus        99 ~~h~-------------------------------~~v~~i~~~~~~~~l~s~~~d~~-------------------i~i  128 (277)
                      ..-.                               ..-..+.+.++..+++.++.++.                   |..
T Consensus       200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A  279 (689)
T 1yiq_A          200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA  279 (689)
T ss_dssp             ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred             cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence            5210                               01125778888889999888764                   899


Q ss_pred             EeCccCCCcceEeeccc-------cCcE--EEEEecCC---eEEEeecCCcEEEEEccCCcccccC-C------------
Q 023772          129 WDCRSHSTEPIQIIDSF-------QDSV--MSVCLTKT---EIIGGSVDGTVRTFDIRVGRELSDD-L------------  183 (277)
Q Consensus       129 wd~~~~~~~~~~~~~~~-------~~~~--~~~~~~~~---~~~~g~~d~~i~i~d~~~~~~~~~~-~------------  183 (277)
                      +|..++..........+       ....  ..+...+.   .++.++.+|.+.++|.++++.+... .            
T Consensus       280 lD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~  359 (689)
T 1yiq_A          280 VNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMK  359 (689)
T ss_dssp             EETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETT
T ss_pred             EEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCcc
Confidence            99887654322222111       1111  12233343   4778899999999999888754110 0            


Q ss_pred             ----------------------------CCCeeEEEEeCCCCEEEEEec-------------------------------
Q 023772          184 ----------------------------GQPVNCISMSNDGNCILASCL-------------------------------  204 (277)
Q Consensus       184 ----------------------------~~~v~~~~~s~~~~~l~~~~~-------------------------------  204 (277)
                                                  ......++|+|+...+++...                               
T Consensus       360 ~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  439 (689)
T 1yiq_A          360 TGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMM  439 (689)
T ss_dssp             TTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCC
T ss_pred             CCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccccc
Confidence                                        011234789998887776532                               


Q ss_pred             --------------CCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccC
Q 023772          205 --------------DSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAH  269 (277)
Q Consensus       205 --------------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h  269 (277)
                                    +|.|+.||+.+++.+..+..+...   ....+...+.+++.|+.||.++.||.++|+++-+++.+
T Consensus       440 p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~---~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~  515 (689)
T 1yiq_A          440 PEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIF---NGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA  515 (689)
T ss_dssp             CSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSC---CCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             CcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCc---cCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence                          378999999999998887654311   11234556778889999999999999999999888754

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.45  E-value=5.9e-11  Score=98.03  Aligned_cols=224  Identities=8%  Similarity=-0.024  Sum_probs=147.7

Q ss_pred             cEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCceeEEeecc-------cC
Q 023772           41 TIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCG----------GDRQIFYWDVSTGRVIRKFRGH-------ES  103 (277)
Q Consensus        41 ~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s----------~d~~v~~wd~~~~~~~~~~~~h-------~~  103 (277)
                      +|.++|..+++.+.++.....+  .+.++|++++++.+.          .++.|.+||+.+++.+.++.-.       ..
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~  124 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence            8889999999999999876666  799999999988876          3688999999999999888643       12


Q ss_pred             ceeEEEEecCCCEEEEEeC--CCcEEE--EeCccCCCcceEe---------------eccccCcEEEEEe----------
Q 023772          104 EVNAVKFNEYSSVVVSAGY--DQSLRA--WDCRSHSTEPIQI---------------IDSFQDSVMSVCL----------  154 (277)
Q Consensus       104 ~v~~i~~~~~~~~l~s~~~--d~~i~i--wd~~~~~~~~~~~---------------~~~~~~~~~~~~~----------  154 (277)
                      ....+.++|++++++.+..  +..+.+  +|..+  ...+..               .....+....+..          
T Consensus       125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v  202 (368)
T 1mda_H          125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIV  202 (368)
T ss_dssp             CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEEC
T ss_pred             CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeE
Confidence            3456899999999988875  456888  88854  111100               0000000111111          


Q ss_pred             ------------------cCCeEEEeecCCcEEEEEccCCc-cc-c---cC------C---CCCeeEEEEeCCCCEEEEE
Q 023772          155 ------------------TKTEIIGGSVDGTVRTFDIRVGR-EL-S---DD------L---GQPVNCISMSNDGNCILAS  202 (277)
Q Consensus       155 ------------------~~~~~~~g~~d~~i~i~d~~~~~-~~-~---~~------~---~~~v~~~~~s~~~~~l~~~  202 (277)
                                        .+..++..+. +.+.+.|..... .+ .   ..      .   ......+.++|+++.++.+
T Consensus       203 ~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~  281 (368)
T 1mda_H          203 GAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMIL  281 (368)
T ss_dssp             CCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEE
T ss_pred             EEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEE
Confidence                              1112232333 566666664321 11 0   00      0   0112237899999888765


Q ss_pred             ec-C--------CeEEEEECCCCceEEEEeccccceeeeeeEecCCCce-EEeec-CCCeEEEEECcCccceeeeccCcc
Q 023772          203 CL-D--------STLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAH-VTGGS-EDGYIYFWDLVDASVVAKFKAHSL  271 (277)
Q Consensus       203 ~~-d--------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~sgs-~d~~i~iwd~~~~~~~~~~~~h~~  271 (277)
                      .. +        +.+.++|..+++.+..+....   ......+++++++ +++.. .++.|.++|..+++.+++++....
T Consensus       282 ~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~  358 (368)
T 1mda_H          282 TVEHSRSCLAAAENTSSVTASVGQTSGPISNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG  358 (368)
T ss_dssp             EEECSSCTTSCEEEEEEEESSSCCEEECCEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC
T ss_pred             eccccCcccccCCCEEEEECCCCeEEEEEECCC---CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC
Confidence            43 2        356699999999988776432   2445678999974 45555 589999999999999999986544


Q ss_pred             e
Q 023772          272 V  272 (277)
Q Consensus       272 ~  272 (277)
                      +
T Consensus       359 P  359 (368)
T 1mda_H          359 P  359 (368)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.44  E-value=4.6e-10  Score=90.34  Aligned_cols=222  Identities=11%  Similarity=0.070  Sum_probs=143.8

Q ss_pred             eccCCcEEEEEEeCC-CCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 023772           15 KGHEGAVLAARFNGD-GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGR   93 (277)
Q Consensus        15 ~~H~~~V~~~~~~~~-~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~   93 (277)
                      ..+..--.+..|+++ +.++++...++.|..||..++.. ..+. ....+.+++++++++++++.  ++.|.+||.++++
T Consensus         9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~   84 (297)
T 3g4e_A            9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVATI--GTKFCALNWKEQS   84 (297)
T ss_dssp             CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTE
T ss_pred             ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEEE--CCeEEEEECCCCc
Confidence            334445678899995 45666777889999999988754 3333 35689999999999965553  5689999998876


Q ss_pred             eeEEeec----ccCceeEEEEecCCCEEEEEeCC---------CcEEEEeCccCCCcceEeeccccCcEEEEEecC--Ce
Q 023772           94 VIRKFRG----HESEVNAVKFNEYSSVVVSAGYD---------QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TE  158 (277)
Q Consensus        94 ~~~~~~~----h~~~v~~i~~~~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  158 (277)
                      .......    ....++.+.+.+++++.++...+         ..-.+|.+.... . .............+.+++  +.
T Consensus        85 ~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~-~~~~~~~~~~pngi~~spdg~~  162 (297)
T 3g4e_A           85 AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-H-VKKYFDQVDISNGLDWSLDHKI  162 (297)
T ss_dssp             EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-C-EEEEEEEESBEEEEEECTTSCE
T ss_pred             EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-C-EEEEeeccccccceEEcCCCCE
Confidence            5332221    12457889999999987765332         223455443221 1 111111222334555554  33


Q ss_pred             E-EEeecCCcEEEEEcc--CCcc-----cccC--CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccc
Q 023772          159 I-IGGSVDGTVRTFDIR--VGRE-----LSDD--LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICK  228 (277)
Q Consensus       159 ~-~~g~~d~~i~i~d~~--~~~~-----~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~  228 (277)
                      + ++.+.++.|..||+.  .+..     +...  ....+..++++++|++.++...++.|..||..+++.+..+....  
T Consensus       163 lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~--  240 (297)
T 3g4e_A          163 FYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPV--  240 (297)
T ss_dssp             EEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSS--
T ss_pred             EEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCC--
Confidence            4 455667889999873  3321     1111  12457889999999988887788899999999999888876542  


Q ss_pred             eeeeeeEec-CCCceEE
Q 023772          229 SFKTDCCLT-NSDAHVT  244 (277)
Q Consensus       229 ~~~~~~~~~-~~~~~l~  244 (277)
                      .....++|. |+++.|.
T Consensus       241 ~~~t~~~f~g~d~~~L~  257 (297)
T 3g4e_A          241 DKTTSCCFGGKNYSEMY  257 (297)
T ss_dssp             SBEEEEEEESGGGCEEE
T ss_pred             CCceEEEEeCCCCCEEE
Confidence            235667787 6665443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.44  E-value=3e-14  Score=118.54  Aligned_cols=189  Identities=12%  Similarity=0.055  Sum_probs=111.5

Q ss_pred             CCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccC-ceeE
Q 023772           29 DGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHES-EVNA  107 (277)
Q Consensus        29 ~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~-~v~~  107 (277)
                      ++..+++++.|+.|+.||..+|+.+-.++.  +++.+..+..++..+++++.|+.++.||.++|+.+..+..+.. .+.+
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            477899999999999999999999888876  5566666667777888888999999999999988766654321 1110


Q ss_pred             EEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCCcEEEEEccCCcccccCCCCCe
Q 023772          108 VKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLGQPV  187 (277)
Q Consensus       108 i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~v  187 (277)
                      .-....+..+++++.|+.+..||..++.....  +.... . ....+....+++++.|+.|..||.++++..........
T Consensus        86 sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~--~~~~~-~-~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~  161 (369)
T 2hz6_A           86 SPCRSSDGILYMGKKQDIWYVIDLLTGEKQQT--LSSAF-A-DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDY  161 (369)
T ss_dssp             CSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEEE
T ss_pred             CceEecCCEEEEEeCCCEEEEEECCCCcEEEE--ecCCC-c-ccccccCCEEEEEecCCEEEEEECCCCCEEEeEecccc
Confidence            00011345677888999999999987643222  11111 1 12222455688889999999999988875432111111


Q ss_pred             eEEEEeCCC---CEEEEEecCCeEEEEECCCCceEEEEe
Q 023772          188 NCISMSNDG---NCILASCLDSTLRLLDRSTGELLQEYK  223 (277)
Q Consensus       188 ~~~~~s~~~---~~l~~~~~d~~i~~wd~~~~~~~~~~~  223 (277)
                      ....++++.   ..+++++.||.++.||..+++.+..+.
T Consensus       162 ~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          162 AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN  200 (369)
T ss_dssp             CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred             cCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence            222333332   457788899999999999999887665

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.43  E-value=8.9e-11  Score=106.30  Aligned_cols=237  Identities=8%  Similarity=-0.005  Sum_probs=143.1

Q ss_pred             eCCCCEEEEEeCCCc---EEEEcC--C---CCeeEEEE------eccCccEEEEEEcCCCCEEEEEeCC-----CcEEEE
Q 023772           27 NGDGNYCLSCGKDRT---IRLWNP--H---RGIHIKTY------KSHGREVRDVHVTADNSKLISCGGD-----RQIFYW   87 (277)
Q Consensus        27 ~~~~~~l~s~s~d~~---v~iwd~--~---~~~~~~~~------~~h~~~v~~~~~~~~~~~l~t~s~d-----~~v~~w   87 (277)
                      +|+|++++....++.   -.+|..  .   .+.....+      .+|...+....|+|++++|+.++.+     ..|++|
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~  194 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV  194 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence            388998886655443   566653  2   23322211      2233478899999999999877544     469999


Q ss_pred             ECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCc--------------EEEEeCccCCCcceEeecccc--CcEEE
Q 023772           88 DVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQS--------------LRAWDCRSHSTEPIQIIDSFQ--DSVMS  151 (277)
Q Consensus        88 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~--------------i~iwd~~~~~~~~~~~~~~~~--~~~~~  151 (277)
                      |+++++.+... .+...+..+.|+|+ +.|+.++.|+.              |++|++.+.............  ..+..
T Consensus       195 dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~  272 (741)
T 1yr2_A          195 GVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHG  272 (741)
T ss_dssp             ETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred             ECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEE
Confidence            99999876531 12223357889999 88888887664              889998654432233333222  23555


Q ss_pred             EEecCC--eEEEeecC-----CcEEEEEccCC--c-cc-ccCCCCCeeEEEEeCCCCEEEEEecC----CeEEEEECCCC
Q 023772          152 VCLTKT--EIIGGSVD-----GTVRTFDIRVG--R-EL-SDDLGQPVNCISMSNDGNCILASCLD----STLRLLDRSTG  216 (277)
Q Consensus       152 ~~~~~~--~~~~g~~d-----~~i~i~d~~~~--~-~~-~~~~~~~v~~~~~s~~~~~l~~~~~d----~~i~~wd~~~~  216 (277)
                      +.++++  .++..+.+     ..|.+||+..+  + .. ........... ++|+|+.|+..+.+    +.|.+||+.++
T Consensus       273 ~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~  351 (741)
T 1yr2_A          273 ASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGS  351 (741)
T ss_dssp             EEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred             EEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence            566554  46655544     37999998765  2 11 11112223333 35888888877653    45999999874


Q ss_pred             -ceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECc-Cccceeeecc
Q 023772          217 -ELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLV-DASVVAKFKA  268 (277)
Q Consensus       217 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~-~~~~~~~~~~  268 (277)
                       ...+.+..+... ....+.+. ++.++++...|+..++|.+. +++..+.+..
T Consensus       352 ~~~~~~l~~~~~~-~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~  403 (741)
T 1yr2_A          352 TPRFDTVVPESKD-NLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSL  403 (741)
T ss_dssp             SCEEEEEECCCSS-EEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBC
T ss_pred             ccccEEEecCCCC-eEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccC
Confidence             233333333222 22333444 56778888899988887655 4666666654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.42  E-value=2e-10  Score=94.99  Aligned_cols=239  Identities=10%  Similarity=0.040  Sum_probs=158.9

Q ss_pred             EEEeCCCCEEEEEeC-----CCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEe----------CCCcEEEEE
Q 023772           24 ARFNGDGNYCLSCGK-----DRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCG----------GDRQIFYWD   88 (277)
Q Consensus        24 ~~~~~~~~~l~s~s~-----d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s----------~d~~v~~wd   88 (277)
                      ....|+++.++....     ++.|.+.|..+++.+.++.....+ . +.++|++++++.++          .++.|.+||
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD  115 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD  115 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence            445689988887755     689999999999999998876665 4 99999999887765          367899999


Q ss_pred             CCCCceeEEeeccc-------CceeEEEEecCCCEEEEEeC--CCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeE
Q 023772           89 VSTGRVIRKFRGHE-------SEVNAVKFNEYSSVVVSAGY--DQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEI  159 (277)
Q Consensus        89 ~~~~~~~~~~~~h~-------~~v~~i~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (277)
                      ..+.+.+.++.-..       ..-..+.++|++++++.+..  ++.|.++|+.+...  +..+.. +............+
T Consensus       116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~v--v~tI~v-~g~~~~~P~g~~~~  192 (386)
T 3sjl_D          116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF--KRMLDV-PDCYHIFPTAPDTF  192 (386)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE--EEEEEC-CSEEEEEEEETTEE
T ss_pred             CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcE--EEEEEC-CCcceeecCCCcee
Confidence            99999888774221       23456899999999888764  68999999986543  222221 11122223345567


Q ss_pred             EEeecCCcEEEEEccC-Ccccc------cCCCCCe-eEEEEe-CCCCEEEEEecCCeEEEEECCCCc--eEEEEe---c-
Q 023772          160 IGGSVDGTVRTFDIRV-GRELS------DDLGQPV-NCISMS-NDGNCILASCLDSTLRLLDRSTGE--LLQEYK---G-  224 (277)
Q Consensus       160 ~~g~~d~~i~i~d~~~-~~~~~------~~~~~~v-~~~~~s-~~~~~l~~~~~d~~i~~wd~~~~~--~~~~~~---~-  224 (277)
                      ++.+.||++.+.++.. ++...      .....++ ....|. ++|++++ .+.+|.+++.|...+.  .+..+.   . 
T Consensus       193 ~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~  271 (386)
T 3sjl_D          193 FMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEA  271 (386)
T ss_dssp             EEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHH
T ss_pred             EEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccc
Confidence            7888899999999875 43211      1111122 224564 5776555 5568999999997654  333332   0 


Q ss_pred             ----cccceeeeeeEecCCCceEEeecC----------CCeEEEEECcCccceeeecc
Q 023772          225 ----HICKSFKTDCCLTNSDAHVTGGSE----------DGYIYFWDLVDASVVAKFKA  268 (277)
Q Consensus       225 ----~~~~~~~~~~~~~~~~~~l~sgs~----------d~~i~iwd~~~~~~~~~~~~  268 (277)
                          .....-.....++++++.+.....          .+.|.+.|..++++++++.-
T Consensus       272 ~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v  329 (386)
T 3sjl_D          272 ERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM  329 (386)
T ss_dssp             HHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred             cccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC
Confidence                000001122456777777666432          35799999999999998873

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.42  E-value=3.3e-10  Score=94.15  Aligned_cols=231  Identities=16%  Similarity=0.134  Sum_probs=149.8

Q ss_pred             CCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCce---
Q 023772           29 DGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEV---  105 (277)
Q Consensus        29 ~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v---  105 (277)
                      ++..++.++.|+.|..+|..+|+.+-.+...........+.  +..++.++.++.+..+|.++++.+..+.......   
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~  179 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR  179 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence            34577778889999999999998877666543222222222  4578888899999999999999887766432211   


Q ss_pred             --eEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccC---------cEEEEEecCCeEEEeecCCcEEEEEcc
Q 023772          106 --NAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQD---------SVMSVCLTKTEIIGGSVDGTVRTFDIR  174 (277)
Q Consensus       106 --~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~d~~i~i~d~~  174 (277)
                        ......  +..++.++.++.+..+|..+..............         ...........++.++.++.+..+|..
T Consensus       180 ~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~  257 (376)
T 3q7m_A          180 GESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLR  257 (376)
T ss_dssp             CCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETT
T ss_pred             CCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECC
Confidence              111222  3567778889999999987654322111111000         001111235567788889999999998


Q ss_pred             CCcccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEE
Q 023772          175 VGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYF  254 (277)
Q Consensus       175 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~i  254 (277)
                      +++............+...  +..+..++.++.+..+|..+++.+.......... ......  .+..|..++.+|.++.
T Consensus       258 tG~~~w~~~~~~~~~~~~~--~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~-~~~~~~--~~~~l~v~~~~g~l~~  332 (376)
T 3q7m_A          258 SGQIMWKRELGSVNDFIVD--GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRL-LTSPVL--YNGNLVVGDSEGYLHW  332 (376)
T ss_dssp             TCCEEEEECCCCEEEEEEE--TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSC-CCCCEE--ETTEEEEECTTSEEEE
T ss_pred             CCcEEeeccCCCCCCceEE--CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCc-ccCCEE--ECCEEEEEeCCCeEEE
Confidence            8876543322334444443  5568888889999999999999877665221111 111112  2457788889999999


Q ss_pred             EECcCccceeeecc
Q 023772          255 WDLVDASVVAKFKA  268 (277)
Q Consensus       255 wd~~~~~~~~~~~~  268 (277)
                      +|..+++++.+++.
T Consensus       333 ~d~~tG~~~~~~~~  346 (376)
T 3q7m_A          333 INVEDGRFVAQQKV  346 (376)
T ss_dssp             EETTTCCEEEEEEC
T ss_pred             EECCCCcEEEEEec
Confidence            99999999877765

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.36  E-value=6.4e-09  Score=84.78  Aligned_cols=213  Identities=11%  Similarity=0.059  Sum_probs=136.6

Q ss_pred             cEEEEEEeCCC-CEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe
Q 023772           20 AVLAARFNGDG-NYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKF   98 (277)
Q Consensus        20 ~V~~~~~~~~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~   98 (277)
                      -..+..|++++ .++++...++.|..||..+++.. .+. ....+.++.++++++++++. .+ .|.+||.++++.....
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~  125 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA  125 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe
Confidence            35678999975 45667777899999999887643 333 34679999999998877754 34 4999999887754322


Q ss_pred             ec---c-cCceeEEEEecCCCEEEEEeCC------CcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeE-EEeecC
Q 023772           99 RG---H-ESEVNAVKFNEYSSVVVSAGYD------QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEI-IGGSVD  165 (277)
Q Consensus        99 ~~---h-~~~v~~i~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~g~~d  165 (277)
                      ..   . ...++++.+.++++++++...+      +.|..++  ...   ...+.........+.+++  +.+ ++...+
T Consensus       126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~---~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~  200 (326)
T 2ghs_A          126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGK---VTKLFADISIPNSICFSPDGTTGYFVDTKV  200 (326)
T ss_dssp             CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTE---EEEEEEEESSEEEEEECTTSCEEEEEETTT
T ss_pred             eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCc---EEEeeCCCcccCCeEEcCCCCEEEEEECCC
Confidence            11   1 2368899999999987765432      3455555  221   111111112334555554  344 444557


Q ss_pred             CcEEEEEcc--CC-cc-----cccC--CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeE
Q 023772          166 GTVRTFDIR--VG-RE-----LSDD--LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCC  235 (277)
Q Consensus       166 ~~i~i~d~~--~~-~~-----~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  235 (277)
                      +.|.+||+.  .+ ..     +...  ....+..++++++|.+.++...++.|..||. +++.+..+....  .....++
T Consensus       201 ~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~--~~~~~~a  277 (326)
T 2ghs_A          201 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPG--KQTTCPA  277 (326)
T ss_dssp             CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSC--SBEEEEE
T ss_pred             CEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCC--CCcEEEE
Confidence            889999985  44 21     1111  1234678999999997777777789999998 577777766442  2345667


Q ss_pred             ec-CCCceEE
Q 023772          236 LT-NSDAHVT  244 (277)
Q Consensus       236 ~~-~~~~~l~  244 (277)
                      ++ +++..|.
T Consensus       278 f~g~d~~~L~  287 (326)
T 2ghs_A          278 FIGPDASRLL  287 (326)
T ss_dssp             EESTTSCEEE
T ss_pred             EecCCCCEEE
Confidence            76 7766554

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.35  E-value=1.1e-09  Score=91.08  Aligned_cols=195  Identities=15%  Similarity=0.082  Sum_probs=122.5

Q ss_pred             EEEEeCCCCEEEEEe----------CCCcEEEEcCCCCeeEEEEecc-------CccEEEEEEcCCCCEEEEEeC--CCc
Q 023772           23 AARFNGDGNYCLSCG----------KDRTIRLWNPHRGIHIKTYKSH-------GREVRDVHVTADNSKLISCGG--DRQ   83 (277)
Q Consensus        23 ~~~~~~~~~~l~s~s----------~d~~v~iwd~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~l~t~s~--d~~   83 (277)
                      .+.|+|||++++.+.          .++.|.+||..+.+.+.++...       ......+.++|++++|+.+..  +++
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            899999999999875          3678999999988877776532       123568999999999998874  578


Q ss_pred             EEEEECCCCceeEE-eecccCceeEEEEecCC-CEEEEEeCCCcEEEE--------------------------------
Q 023772           84 IFYWDVSTGRVIRK-FRGHESEVNAVKFNEYS-SVVVSAGYDQSLRAW--------------------------------  129 (277)
Q Consensus        84 v~~wd~~~~~~~~~-~~~h~~~v~~i~~~~~~-~~l~s~~~d~~i~iw--------------------------------  129 (277)
                      |.++| ++++.+.+ +.... .   +.+.+++ ..+++.+.||.+.++                                
T Consensus       150 v~viD-~t~~~~~~~i~~~~-~---~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~  224 (373)
T 2mad_H          150 VGLVV-QGGSSDDQLLSSPT-C---YHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKS  224 (373)
T ss_pred             EEEEE-CCCCEEeEEcCCCc-e---EEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecC
Confidence            99999 99988777 53211 1   1122221 222233333333333                                


Q ss_pred             ---------------eCccCCCcceEeec----------cccCcE--EEEEecCCeEEEeec----------CCcEEEEE
Q 023772          130 ---------------DCRSHSTEPIQIID----------SFQDSV--MSVCLTKTEIIGGSV----------DGTVRTFD  172 (277)
Q Consensus       130 ---------------d~~~~~~~~~~~~~----------~~~~~~--~~~~~~~~~~~~g~~----------d~~i~i~d  172 (277)
                                     |+..........+.          ..+...  ..+..++..+++...          ++.|.++|
T Consensus       225 ~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID  304 (373)
T 2mad_H          225 GRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVT  304 (373)
T ss_pred             CEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEE
Confidence                           33211100000000          001111  122223344444332          35799999


Q ss_pred             ccCCccccc-CCCCCeeEEEEeCCCC-EEEEEe-cCCeEEEEECCCCceEEEE
Q 023772          173 IRVGRELSD-DLGQPVNCISMSNDGN-CILASC-LDSTLRLLDRSTGELLQEY  222 (277)
Q Consensus       173 ~~~~~~~~~-~~~~~v~~~~~s~~~~-~l~~~~-~d~~i~~wd~~~~~~~~~~  222 (277)
                      ..+.+.+.. ..+.....++|+|+|+ .++++. .++.|.++|..+++.++.+
T Consensus       305 ~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          305 GLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             CCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence            988776443 3455688999999999 677766 5899999999999988774

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.35  E-value=8.3e-11  Score=96.71  Aligned_cols=228  Identities=14%  Similarity=0.102  Sum_probs=141.8

Q ss_pred             CcEEEEEEeCCCCEEEEEe--CCCcEEEEcCCCCeeEEEE-------eccCccEEEEEEcCCCCEEEEEeC-----CCcE
Q 023772           19 GAVLAARFNGDGNYCLSCG--KDRTIRLWNPHRGIHIKTY-------KSHGREVRDVHVTADNSKLISCGG-----DRQI   84 (277)
Q Consensus        19 ~~V~~~~~~~~~~~l~s~s--~d~~v~iwd~~~~~~~~~~-------~~h~~~v~~~~~~~~~~~l~t~s~-----d~~v   84 (277)
                      ..+..++++++|+++++..  .++.++||.+.+++. ..+       ..|-..+..++++++++.+++-..     +..|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            6789999999999998864  234356665545543 222       124467999999999876665433     5789


Q ss_pred             EEEECCCCceeEEeecc------cCceeEEEEecCC-CEEEEEe---CCCcEEEEeCccCCCcceEeeccccCc---EEE
Q 023772           85 FYWDVSTGRVIRKFRGH------ESEVNAVKFNEYS-SVVVSAG---YDQSLRAWDCRSHSTEPIQIIDSFQDS---VMS  151 (277)
Q Consensus        85 ~~wd~~~~~~~~~~~~h------~~~v~~i~~~~~~-~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~---~~~  151 (277)
                      .+||+++++.++.+...      ...++.+++.+++ ...++..   .++.|.+||+.....  ......+...   -..
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~--~r~~~~~~~~~~~~~~  173 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA--ARVLQGYPGIAPEDID  173 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE--EEECTTCTTTSCCSCC
T ss_pred             EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE--EEEecCCCcccccccc
Confidence            99999999877766532      2356889999764 4456655   688999999875432  2222221110   011


Q ss_pred             EEecCCeEEEeecCCcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecCC-eEEEEECC---CCc-----eEE--
Q 023772          152 VCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDS-TLRLLDRS---TGE-----LLQ--  220 (277)
Q Consensus       152 ~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-~i~~wd~~---~~~-----~~~--  220 (277)
                      +...+..+.+...++.++.|.            ..++.++|+|+|+.|..+..++ .++.++..   .+.     ...  
T Consensus       174 ~~~~g~~~~~~~~~g~~~~~~------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  241 (343)
T 2qe8_A          174 LVIDGVPVQIGQPDGTVIRPH------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKI  241 (343)
T ss_dssp             CEETTEECBEECTTSCEECCC------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTC
T ss_pred             eeECCEEEEeccCCCceecee------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcce
Confidence            222333344445566554432            2467899999999888877665 45444431   111     000  


Q ss_pred             EEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccce
Q 023772          221 EYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVV  263 (277)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~  263 (277)
                      ...++.  ......++.++|.+.++...++.|..||..+++..
T Consensus       242 ~~~g~~--g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~  282 (343)
T 2qe8_A          242 ERYSEK--PICDGISIDKDHNIYVGDLAHSAIGVITSADRAYK  282 (343)
T ss_dssp             EEEEEC--CSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEE
T ss_pred             EecccC--CCCceEEECCCCCEEEEccCCCeEEEEECCCCCEE
Confidence            011111  12234567888998888889999999999666643

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.30  E-value=7.8e-09  Score=83.08  Aligned_cols=211  Identities=12%  Similarity=0.120  Sum_probs=130.1

Q ss_pred             cCccEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCc
Q 023772           59 HGREVRDVHVTADNS-KLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTE  137 (277)
Q Consensus        59 h~~~v~~~~~~~~~~-~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  137 (277)
                      +..-..+..|+++++ .+++...++.|..||.++++. ..+. ....+.++.+.++++++++.  ++.|.+||..+....
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~   86 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAV   86 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEE
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEE
Confidence            344556788888655 455666789999999988765 2332 45688999999999966653  567999998654332


Q ss_pred             ceEeecc--ccCcEEEEEecCCe-EEEeec----------CCcEEEEEccCCcccc--cCCCCCeeEEEEeCCCCEE-EE
Q 023772          138 PIQIIDS--FQDSVMSVCLTKTE-IIGGSV----------DGTVRTFDIRVGRELS--DDLGQPVNCISMSNDGNCI-LA  201 (277)
Q Consensus       138 ~~~~~~~--~~~~~~~~~~~~~~-~~~g~~----------d~~i~i~d~~~~~~~~--~~~~~~v~~~~~s~~~~~l-~~  201 (277)
                      .+.....  ....+..+.++++. ++.+..          ...-.+|.+.......  .......+.++|+|+++.| ++
T Consensus        87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~  166 (297)
T 3g4e_A           87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYI  166 (297)
T ss_dssp             EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEE
T ss_pred             EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEe
Confidence            2221111  11234555555433 444332          1234455443221111  1112346889999999866 45


Q ss_pred             EecCCeEEEEEC--CCCceE--EEEec-cccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCccee
Q 023772          202 SCLDSTLRLLDR--STGELL--QEYKG-HICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVV  273 (277)
Q Consensus       202 ~~~d~~i~~wd~--~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v  273 (277)
                      .+.++.|..||+  .++.+.  +.+.. ..........++.++|++.++...++.|..||..+++++..+..+...+
T Consensus       167 ~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~  243 (297)
T 3g4e_A          167 DSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKT  243 (297)
T ss_dssp             EGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBE
T ss_pred             cCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCc
Confidence            566789999987  455432  12211 1111233445678888877777778899999999999999888764333

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.27  E-value=3.3e-09  Score=88.10  Aligned_cols=227  Identities=11%  Similarity=0.096  Sum_probs=145.1

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCeeEEEEeccC---------ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeec
Q 023772           30 GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG---------REVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRG  100 (277)
Q Consensus        30 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~---------~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~  100 (277)
                      +..++.++.++.|..+|..+|+.+-.+....         ..+.+. ....+..++.++.++.+..+|.++|+.+.++..
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~  131 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV  131 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence            5677888889999999999998876665421         222222 222456788888999999999999998877664


Q ss_pred             ccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccC---cEEEEEecCCeEEEeecCCcEEEEEccCCc
Q 023772          101 HESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQD---SVMSVCLTKTEIIGGSVDGTVRTFDIRVGR  177 (277)
Q Consensus       101 h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~  177 (277)
                      ...........  +..++.++.++.+..+|..++.............   ...........++.++.++.+..+|..+++
T Consensus       132 ~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~  209 (376)
T 3q7m_A          132 AGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQ  209 (376)
T ss_dssp             SSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEEEETTTCC
T ss_pred             CCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEECCCCc
Confidence            43222222222  4477778899999999987654322111111000   001112235668888889999999998876


Q ss_pred             ccccC-CCCC-----------e-eEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEE
Q 023772          178 ELSDD-LGQP-----------V-NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVT  244 (277)
Q Consensus       178 ~~~~~-~~~~-----------v-~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  244 (277)
                      ..... ...+           + ....+  .+..+..++.++.+..+|..+++.+..+....  .  ...  ..++..+.
T Consensus       210 ~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~--~--~~~--~~~~~~l~  281 (376)
T 3q7m_A          210 MIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDLRSGQIMWKRELGS--V--NDF--IVDGNRIY  281 (376)
T ss_dssp             EEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEETTTCCEEEEECCCC--E--EEE--EEETTEEE
T ss_pred             EEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEECCCCcEEeeccCCC--C--CCc--eEECCEEE
Confidence            54221 1100           1 01111  24567788889999999999999887654321  1  111  22355677


Q ss_pred             eecCCCeEEEEECcCccceeeec
Q 023772          245 GGSEDGYIYFWDLVDASVVAKFK  267 (277)
Q Consensus       245 sgs~d~~i~iwd~~~~~~~~~~~  267 (277)
                      .++.++.|+.+|..+++.+-+.+
T Consensus       282 ~~~~~g~l~~~d~~tG~~~w~~~  304 (376)
T 3q7m_A          282 LVDQNDRVMALTIDGGVTLWTQS  304 (376)
T ss_dssp             EEETTCCEEEEETTTCCEEEEEC
T ss_pred             EEcCCCeEEEEECCCCcEEEeec
Confidence            77889999999999998876654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.26  E-value=2.2e-09  Score=86.58  Aligned_cols=210  Identities=10%  Similarity=0.057  Sum_probs=129.9

Q ss_pred             eccCccEEEEEEcCCCCEEEE-------EeCCCcEEEEECCCCceeEEee----cccCceeEEEEecC-CCEEEEEeCCC
Q 023772           57 KSHGREVRDVHVTADNSKLIS-------CGGDRQIFYWDVSTGRVIRKFR----GHESEVNAVKFNEY-SSVVVSAGYDQ  124 (277)
Q Consensus        57 ~~h~~~v~~~~~~~~~~~l~t-------~s~d~~v~~wd~~~~~~~~~~~----~h~~~v~~i~~~~~-~~~l~s~~~d~  124 (277)
                      ...-....+++|++++..+++       +..++.|..||..+++......    ++...+.++.+.++ ++++++.. ++
T Consensus        14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~   92 (314)
T 1pjx_A           14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RL   92 (314)
T ss_dssp             ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TT
T ss_pred             hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CC
Confidence            333456789999999888877       5778899999988877543221    24567889999999 76666544 44


Q ss_pred             cEEEEeCccCCCcce-Eee-cc-ccCcEEEEEecCC--eEEEeecC---------------CcEEEEEccCCcccc-cCC
Q 023772          125 SLRAWDCRSHSTEPI-QII-DS-FQDSVMSVCLTKT--EIIGGSVD---------------GTVRTFDIRVGRELS-DDL  183 (277)
Q Consensus       125 ~i~iwd~~~~~~~~~-~~~-~~-~~~~~~~~~~~~~--~~~~g~~d---------------~~i~i~d~~~~~~~~-~~~  183 (277)
                      .|.+||.. ...... ... .. ....+..+.++++  .+++...+               +.|..||.. ++... ...
T Consensus        93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~  170 (314)
T 1pjx_A           93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA  170 (314)
T ss_dssp             EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE
T ss_pred             CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccC
Confidence            68889976 332111 100 00 1122445555543  34443333               456666654 32211 111


Q ss_pred             CCCeeEEEEe----CCCCEEEEE-ecCCeEEEEECC-CCce-----EEEEeccccceeeeeeEecCCCceEEeecCCCeE
Q 023772          184 GQPVNCISMS----NDGNCILAS-CLDSTLRLLDRS-TGEL-----LQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYI  252 (277)
Q Consensus       184 ~~~v~~~~~s----~~~~~l~~~-~~d~~i~~wd~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i  252 (277)
                      ....+.++++    |+++.+..+ ..++.|++||.. +++.     ...+.++. ......+++.++|.+.++...++.|
T Consensus       171 ~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~-~~~p~~i~~d~~G~l~v~~~~~~~i  249 (314)
T 1pjx_A          171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH-EGGADGMDFDEDNNLLVANWGSSHI  249 (314)
T ss_dssp             ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS-SCEEEEEEEBTTCCEEEEEETTTEE
T ss_pred             CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCC-CCCCCceEECCCCCEEEEEcCCCEE
Confidence            2346789999    999765444 567899999986 4442     12222211 0223446778889888877778899


Q ss_pred             EEEECcCccceeeeccCc
Q 023772          253 YFWDLVDASVVAKFKAHS  270 (277)
Q Consensus       253 ~iwd~~~~~~~~~~~~h~  270 (277)
                      ..||..+++.+..+..+.
T Consensus       250 ~~~d~~~g~~~~~~~~~~  267 (314)
T 1pjx_A          250 EVFGPDGGQPKMRIRCPF  267 (314)
T ss_dssp             EEECTTCBSCSEEEECSS
T ss_pred             EEEcCCCCcEeEEEeCCC
Confidence            999999888877776553

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.26  E-value=2.8e-09  Score=89.52  Aligned_cols=236  Identities=8%  Similarity=-0.014  Sum_probs=154.1

Q ss_pred             CCCCEEEEEeC-C----CcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEe----------CCCcEEEEECCCC
Q 023772           28 GDGNYCLSCGK-D----RTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCG----------GDRQIFYWDVSTG   92 (277)
Q Consensus        28 ~~~~~l~s~s~-d----~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s----------~d~~v~~wd~~~~   92 (277)
                      ++++.++.+.. +    +.|.++|+.+++.+.++.....+  .+.++|++++++.+.          .++.|.++|..++
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            46666665443 2    69999999999999999876656  899999999888775          3678999999999


Q ss_pred             ceeEEeecc-------cCceeEEEEecCCCEEEEEeC--CCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEee
Q 023772           93 RVIRKFRGH-------ESEVNAVKFNEYSSVVVSAGY--DQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGS  163 (277)
Q Consensus        93 ~~~~~~~~h-------~~~v~~i~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  163 (277)
                      +.+.++.--       ...-..+.++|++++++.+..  ++.|.+.|+.+....  ..+.- .............+++.+
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv--~~I~v-~g~~~~~p~g~~~~v~~~  236 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFD--RMLDV-PDCYHIFPASPTVFYMNC  236 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEE--EEEEC-CSEEEEEEEETTEEEEEE
T ss_pred             cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEE--EEEEc-CCceeeccCCCcEEEEEc
Confidence            988876521       123356899999999988874  578999998765432  22221 111111122234566677


Q ss_pred             cCCcEEEEEccCCcccc------cCCCCCe-eEEEEeCCCCEEEEEecCCeEEEEECCCCceE--EEEec---cc---c-
Q 023772          164 VDGTVRTFDIRVGRELS------DDLGQPV-NCISMSNDGNCILASCLDSTLRLLDRSTGELL--QEYKG---HI---C-  227 (277)
Q Consensus       164 ~d~~i~i~d~~~~~~~~------~~~~~~v-~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~--~~~~~---~~---~-  227 (277)
                      .||.+.+.+...++...      .....++ ..+.|++++..++.....+.+.+.|...+...  ..+..   ..   . 
T Consensus       237 ~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~  316 (426)
T 3c75_H          237 RDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDW  316 (426)
T ss_dssp             TTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTE
T ss_pred             CCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccccc
Confidence            78888888885443221      1111121 23567888887777778899999998655421  22210   00   0 


Q ss_pred             -ceeeeeeEecCCCceEEeec----------CCCeEEEEECcCccceeeecc
Q 023772          228 -KSFKTDCCLTNSDAHVTGGS----------EDGYIYFWDLVDASVVAKFKA  268 (277)
Q Consensus       228 -~~~~~~~~~~~~~~~l~sgs----------~d~~i~iwd~~~~~~~~~~~~  268 (277)
                       ..-.....+++++..+....          .++.|.+.|..+.+.++++..
T Consensus       317 ~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v  368 (426)
T 3c75_H          317 RPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL  368 (426)
T ss_dssp             EECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred             ccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC
Confidence             00001135778877655542          145799999999999998873

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.24  E-value=1.7e-09  Score=88.82  Aligned_cols=220  Identities=12%  Similarity=0.042  Sum_probs=139.3

Q ss_pred             ccCCcEEEEEEeCCCCEEEEEeC-----CCcEEEEcCCCCeeEEEEecc------CccEEEEEEcCCCCEE-EEEe---C
Q 023772           16 GHEGAVLAARFNGDGNYCLSCGK-----DRTIRLWNPHRGIHIKTYKSH------GREVRDVHVTADNSKL-ISCG---G   80 (277)
Q Consensus        16 ~H~~~V~~~~~~~~~~~l~s~s~-----d~~v~iwd~~~~~~~~~~~~h------~~~v~~~~~~~~~~~l-~t~s---~   80 (277)
                      +|...+..++++++|++.++-..     ++.|.+||+.+++.++.+..+      ...+..+++++++..+ ++.+   .
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~  143 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD  143 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence            56678999999999876665433     578999999999877776542      2346899999865554 5554   6


Q ss_pred             CCcEEEEECCCCceeEEeecccCcee-EEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec--CC
Q 023772           81 DRQIFYWDVSTGRVIRKFRGHESEVN-AVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT--KT  157 (277)
Q Consensus        81 d~~v~~wd~~~~~~~~~~~~h~~~v~-~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~  157 (277)
                      ++.|.+||+.+++..+.+..|..... ...+..++..+.+.+.|+.++.|..                .+..+.++  +.
T Consensus       144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~----------------~~~gia~s~dg~  207 (343)
T 2qe8_A          144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL----------------GVNGIVLDAENE  207 (343)
T ss_dssp             GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC----------------CEEEEEECTTSC
T ss_pred             CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceec----------------ccceeEeccCCC
Confidence            78999999998887776655432111 1334456666766777887766632                12233444  33


Q ss_pred             eEEEeecCC-cEEEEEccC---C----ccc----cc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEec
Q 023772          158 EIIGGSVDG-TVRTFDIRV---G----REL----SD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKG  224 (277)
Q Consensus       158 ~~~~g~~d~-~i~i~d~~~---~----~~~----~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~  224 (277)
                      .++.+..++ .+..++...   +    ..+    .. ........++++++|..+++...++.|.+||..+++.......
T Consensus       208 ~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~  287 (343)
T 2qe8_A          208 WLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD  287 (343)
T ss_dssp             EEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred             EEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC
Confidence            466555554 444444321   0    000    00 0112456799999999999988999999999966664333322


Q ss_pred             cccceeeeeeEecCCCceEEeecCCCeE
Q 023772          225 HICKSFKTDCCLTNSDAHVTGGSEDGYI  252 (277)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~l~sgs~d~~i  252 (277)
                       ........+++.+++.++++.+..+.+
T Consensus       288 -~~~~~p~~va~~~~g~l~v~~~~~~~~  314 (343)
T 2qe8_A          288 -EKLSWTDSFNFGSDGYLYFDCNQLHHS  314 (343)
T ss_dssp             -GGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred             -CceecCCeeEECCCCcEEEEeCccccc
Confidence             122345667788888777666544333

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.23  E-value=1.2e-08  Score=85.78  Aligned_cols=199  Identities=10%  Similarity=0.036  Sum_probs=131.0

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCC--cEEEEeCccCCCcc
Q 023772           61 REVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQ--SLRAWDCRSHSTEP  138 (277)
Q Consensus        61 ~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~  138 (277)
                      .....++|+++++.+++...++.|+.||.+++++...... ..... ++++++++.++.+..++  .|..++........
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~  208 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT  208 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence            3578999999998778777789999999988776654443 23334 89999999988888866  78888875432211


Q ss_pred             eE-ee-ccccCcEEEEEecC--CeEEEeecCCcEEEEEccCCccccc----CC-C--CC-eeEEEEeCC-CCEEEEEecC
Q 023772          139 IQ-II-DSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVGRELSD----DL-G--QP-VNCISMSND-GNCILASCLD  205 (277)
Q Consensus       139 ~~-~~-~~~~~~~~~~~~~~--~~~~~g~~d~~i~i~d~~~~~~~~~----~~-~--~~-v~~~~~s~~-~~~l~~~~~d  205 (277)
                      .. .. .........+.+++  ..++....++.|..||...+.....    .. .  .. .+.++|+|+ +..+++-..+
T Consensus       209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~  288 (409)
T 3hrp_A          209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL  288 (409)
T ss_dssp             EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred             EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence            11 00 10122233444444  3466666678899999876542211    11 1  11 238999995 6666666778


Q ss_pred             CeEEEEECCCCceEEEEeccc-------------cceeeeeeEecCCCceEEeec-CCCeEEEEECcCccce
Q 023772          206 STLRLLDRSTGELLQEYKGHI-------------CKSFKTDCCLTNSDAHVTGGS-EDGYIYFWDLVDASVV  263 (277)
Q Consensus       206 ~~i~~wd~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~sgs-~d~~i~iwd~~~~~~~  263 (277)
                      +.|+.|+....  +..+.++.             ........++.+++.+.++-+ .++.|+.|+..++++.
T Consensus       289 ~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~  358 (409)
T 3hrp_A          289 SSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS  358 (409)
T ss_dssp             TEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE
T ss_pred             CEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE
Confidence            89999998643  33343331             012345567889998888878 8999999998887643

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.18  E-value=4.1e-09  Score=94.19  Aligned_cols=237  Identities=12%  Similarity=0.130  Sum_probs=152.4

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCeeEEEEeccC----ccEEEEEEcCCCCEEEEEeC------CCcEEEEECCCCceeEEee
Q 023772           30 GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG----REVRDVHVTADNSKLISCGG------DRQIFYWDVSTGRVIRKFR   99 (277)
Q Consensus        30 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~t~s~------d~~v~~wd~~~~~~~~~~~   99 (277)
                      +..++.++.|+.|..+|..+|+.+-.+....    ..+.+.-...+ ..++.+..      ++.|..+|.++|+++.++.
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~-~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  195 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVK-GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEEC-CEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence            4567788889999999999999887776421    11111111113 45555432      5899999999999988775


Q ss_pred             cc---c----------------------------CceeEEEEecCCCEEEEEeCCCc-------------------EEEE
Q 023772          100 GH---E----------------------------SEVNAVKFNEYSSVVVSAGYDQS-------------------LRAW  129 (277)
Q Consensus       100 ~h---~----------------------------~~v~~i~~~~~~~~l~s~~~d~~-------------------i~iw  129 (277)
                      ..   .                            .....+.+.++..+++.++.++.                   |..+
T Consensus       196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al  275 (668)
T 1kv9_A          196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI  275 (668)
T ss_dssp             SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred             ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence            21   0                            01124678888888888877763                   8888


Q ss_pred             eCccCCCcceEeecccc-------CcE--EEEEecCC---eEEEeecCCcEEEEEccCCcccccC--------------C
Q 023772          130 DCRSHSTEPIQIIDSFQ-------DSV--MSVCLTKT---EIIGGSVDGTVRTFDIRVGRELSDD--------------L  183 (277)
Q Consensus       130 d~~~~~~~~~~~~~~~~-------~~~--~~~~~~~~---~~~~g~~d~~i~i~d~~~~~~~~~~--------------~  183 (277)
                      |..++..........+.       ...  ..+..++.   .++.++.+|.+.++|..+++.+...              .
T Consensus       276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~  355 (668)
T 1kv9_A          276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT  355 (668)
T ss_dssp             CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred             cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccccc
Confidence            88776543222221111       111  22333443   4788889999999999888754110              0


Q ss_pred             CC------------------------CeeEEEEeCCCCEEEEEe------------------------------------
Q 023772          184 GQ------------------------PVNCISMSNDGNCILASC------------------------------------  203 (277)
Q Consensus       184 ~~------------------------~v~~~~~s~~~~~l~~~~------------------------------------  203 (277)
                      ..                        ....++++|+...+....                                    
T Consensus       356 g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~  435 (668)
T 1kv9_A          356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV  435 (668)
T ss_dssp             CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred             CCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCC
Confidence            00                        112367888766655421                                    


Q ss_pred             cCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCc
Q 023772          204 LDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHS  270 (277)
Q Consensus       204 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~  270 (277)
                      .+|.|+.||+.+++.+..+..... .  ....+...+.+++.|+.|+.++.||.++|+.+.+++...
T Consensus       436 ~~g~l~A~D~~tG~~~W~~~~~~~-~--~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~  499 (668)
T 1kv9_A          436 VSGALLAWDPVKQKAAWKVPYPTH-W--NGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQS  499 (668)
T ss_dssp             CEEEEEEEETTTTEEEEEEEESSS-C--CCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             ccceEEEEeCCCCcEEEEccCCCC-C--cCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCC
Confidence            247899999999999877654321 1  112234457788889999999999999999998887543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.17  E-value=1.3e-08  Score=87.89  Aligned_cols=234  Identities=12%  Similarity=0.104  Sum_probs=152.2

Q ss_pred             CCCCEEEEEeC-CCcEEEEcCCCCeeEEEEecc-CccEEEEEE-c-CCCCEEEEEe------------------CCCcEE
Q 023772           28 GDGNYCLSCGK-DRTIRLWNPHRGIHIKTYKSH-GREVRDVHV-T-ADNSKLISCG------------------GDRQIF   85 (277)
Q Consensus        28 ~~~~~l~s~s~-d~~v~iwd~~~~~~~~~~~~h-~~~v~~~~~-~-~~~~~l~t~s------------------~d~~v~   85 (277)
                      +||++++.+.. +..|.+.|+.+.++.+.+.-. ...+..+++ . |++++++.++                  .++.+.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            38888886544 567999999999988865432 245888888 4 8999998884                  246899


Q ss_pred             EEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCC--------------------------------------cEE
Q 023772           86 YWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQ--------------------------------------SLR  127 (277)
Q Consensus        86 ~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~--------------------------------------~i~  127 (277)
                      +.|.++.++..++.--. .-..++++++++++++++.+.                                      .|.
T Consensus       179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~  257 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  257 (595)
T ss_dssp             EEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence            99999998888776322 335588999999998888653                                      233


Q ss_pred             EEeCccCCCcc-eEee-ccccCcEEEEEecCCe-EEEeecCCcEEEEEccCCcc-----------c--ccCCCCCeeEEE
Q 023772          128 AWDCRSHSTEP-IQII-DSFQDSVMSVCLTKTE-IIGGSVDGTVRTFDIRVGRE-----------L--SDDLGQPVNCIS  191 (277)
Q Consensus       128 iwd~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~-~~~g~~d~~i~i~d~~~~~~-----------~--~~~~~~~v~~~~  191 (277)
                      +.|.++..... +..+ ......-..+++++.. ++++..+.++.++|+.+.+.           +  ....+.....++
T Consensus       258 VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~a  337 (595)
T 1fwx_A          258 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTA  337 (595)
T ss_dssp             EEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEE
T ss_pred             EEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEE
Confidence            44433310001 1111 0111111233334454 45666788999999986531           1  123356788999


Q ss_pred             EeCCCCEEEEEecCCeEEEEECCC----------CceEEEEeccccce---eeeeeEecCCCceEEee---cCCCeE---
Q 023772          192 MSNDGNCILASCLDSTLRLLDRST----------GELLQEYKGHICKS---FKTDCCLTNSDAHVTGG---SEDGYI---  252 (277)
Q Consensus       192 ~s~~~~~l~~~~~d~~i~~wd~~~----------~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~sg---s~d~~i---  252 (277)
                      |+|+|..+++...|++|..||+.+          .+.+..+..|....   ......+++||++|++.   +.|+.+   
T Consensus       338 F~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~g  417 (595)
T 1fwx_A          338 FDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVG  417 (595)
T ss_dssp             ECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCC
T ss_pred             ECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCC
Confidence            999995556677899999999876          45666666553211   11112457999999875   557642   


Q ss_pred             -------EEEECcCccc
Q 023772          253 -------YFWDLVDASV  262 (277)
Q Consensus       253 -------~iwd~~~~~~  262 (277)
                             .++|+..+++
T Consensus       418 p~~~~~~ql~dis~~~m  434 (595)
T 1fwx_A          418 PLKPENDQLIDISGDKM  434 (595)
T ss_dssp             SSCCEEEEEEECSSSSC
T ss_pred             CCCCCcceEEEcCCCcE
Confidence                   7899976553

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.16  E-value=8.7e-09  Score=83.11  Aligned_cols=195  Identities=12%  Similarity=0.079  Sum_probs=120.3

Q ss_pred             ceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEecc----CccEEEEEEcCCCCEEEE----EeC---
Q 023772           12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSH----GREVRDVHVTADNSKLIS----CGG---   80 (277)
Q Consensus        12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~t----~s~---   80 (277)
                      ..+..+.+.+..+.++++|+++++...++.|.+|+.. ++........    ...++.+.+.+++...+|    |..   
T Consensus        79 ~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~  157 (305)
T 3dr2_A           79 DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPS  157 (305)
T ss_dssp             EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGG
T ss_pred             EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccc
Confidence            3455566778999999999977666666889999976 5432222111    124678999999998887    332   


Q ss_pred             ----------CCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCC------CcEEEEeCccCCCcceEee-c
Q 023772           81 ----------DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYD------QSLRAWDCRSHSTEPIQII-D  143 (277)
Q Consensus        81 ----------d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~-~  143 (277)
                                .+.|..+|.++++.....  .....+.++|+|+++.++.+...      +.|..|++..........+ .
T Consensus       158 ~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~  235 (305)
T 3dr2_A          158 QGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFAS  235 (305)
T ss_dssp             GSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEEC
T ss_pred             cccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEE
Confidence                      256788887767654332  44456789999999977766654      6899998764321111111 1


Q ss_pred             cccCcEEEEEecCC-eEEEeecCCcEEEEEccCCccccc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEE
Q 023772          144 SFQDSVMSVCLTKT-EIIGGSVDGTVRTFDIRVGRELSD-DLGQPVNCISMSNDGNCILASCLDSTLRLLD  212 (277)
Q Consensus       144 ~~~~~~~~~~~~~~-~~~~g~~d~~i~i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd  212 (277)
                      ........+..+++ .++++..++ |.+||.. ++.+.. .....+.+++|+++++.|..++.++ ++.++
T Consensus       236 ~~~~~pdgi~~d~~G~lwv~~~~g-v~~~~~~-g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~~-l~~~~  303 (305)
T 3dr2_A          236 VPDGLPDGFCVDRGGWLWSSSGTG-VCVFDSD-GQLLGHIPTPGTASNCTFDQAQQRLFITGGPC-LWMLP  303 (305)
T ss_dssp             CSSSCCCSEEECTTSCEEECCSSE-EEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred             CCCCCCCeEEECCCCCEEEecCCc-EEEECCC-CCEEEEEECCCceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence            11111122333332 255665444 8889974 332221 2233578899999998888877664 44433

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.10  E-value=1.7e-07  Score=78.29  Aligned_cols=217  Identities=17%  Similarity=0.143  Sum_probs=136.5

Q ss_pred             CCCCEEE-EEeCCCcEEEEcCCCC----eeEEEEe------ccC-ccEEEEEEcCCCCEEEEEeCC------CcEEEEEC
Q 023772           28 GDGNYCL-SCGKDRTIRLWNPHRG----IHIKTYK------SHG-REVRDVHVTADNSKLISCGGD------RQIFYWDV   89 (277)
Q Consensus        28 ~~~~~l~-s~s~d~~v~iwd~~~~----~~~~~~~------~h~-~~v~~~~~~~~~~~l~t~s~d------~~v~~wd~   89 (277)
                      .++++|+ ++..+..|.|+|+.+.    +..++++      ... .....+...|++ .++++..+      +.+.+.|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            7777666 6788899999998755    5666663      112 255678889999 77776555      78999999


Q ss_pred             CCCceeEEeecccCc---eeEEEEecCCCEEEEEe-------------------CCCcEEEEeCccCCCcceEeeccc-c
Q 023772           90 STGRVIRKFRGHESE---VNAVKFNEYSSVVVSAG-------------------YDQSLRAWDCRSHSTEPIQIIDSF-Q  146 (277)
Q Consensus        90 ~~~~~~~~~~~h~~~---v~~i~~~~~~~~l~s~~-------------------~d~~i~iwd~~~~~~~~~~~~~~~-~  146 (277)
                      ++.+++.++..-..+   -..+-|+|+++.+++..                   .+.+|.+||+....  ..+.+... .
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k--~~~tI~vg~~  249 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK--RIHSLTLGEE  249 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE--EEEEEESCTT
T ss_pred             CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc--EeeEEecCCC
Confidence            999999888633222   23467799999888874                   37899999997642  23333221 1


Q ss_pred             -CcEEEEE--ecCC--eE-EEee-----cCCcEEEEEccCCc-----cc--cc-----C----------CCCCeeEEEEe
Q 023772          147 -DSVMSVC--LTKT--EI-IGGS-----VDGTVRTFDIRVGR-----EL--SD-----D----------LGQPVNCISMS  193 (277)
Q Consensus       147 -~~~~~~~--~~~~--~~-~~g~-----~d~~i~i~d~~~~~-----~~--~~-----~----------~~~~v~~~~~s  193 (277)
                       .....+.  ++++  .+ ++..     .+++|.+|....+.     .+  ..     .          .......+.+|
T Consensus       250 g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS  329 (462)
T 2ece_A          250 NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS  329 (462)
T ss_dssp             EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC
T ss_pred             CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEEC
Confidence             1122222  2443  33 3444     56677654432221     00  00     0          02346788999


Q ss_pred             CCCCEEEEEe-cCCeEEEEECCC---CceEEEEeccc------------cceeeeeeEecCCCceEEeec
Q 023772          194 NDGNCILASC-LDSTLRLLDRST---GELLQEYKGHI------------CKSFKTDCCLTNSDAHVTGGS  247 (277)
Q Consensus       194 ~~~~~l~~~~-~d~~i~~wd~~~---~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~sgs  247 (277)
                      +||++|.++. ..+.|.+||+..   .+++....-..            .........++++|++|..+.
T Consensus       330 ~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          330 LDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             TTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            9999887665 477999999852   34554443210            001245567899999988776

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.10  E-value=7.4e-08  Score=78.45  Aligned_cols=203  Identities=12%  Similarity=0.027  Sum_probs=122.3

Q ss_pred             cEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceE
Q 023772           62 EVRDVHVTADNS-KLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQ  140 (277)
Q Consensus        62 ~v~~~~~~~~~~-~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  140 (277)
                      -.....|+++++ .+++...++.|..||.++++.. .+. ....+.++.+.++++++++. .++ |.+||..+.......
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~g-l~~~d~~~g~~~~~~  125 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DDG-LFLRDTATGVLTLHA  125 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TTE-EEEEETTTCCEEEEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CCC-EEEEECCCCcEEEEe
Confidence            345678888755 4556667889999999887643 333 35678999999999887764 444 999998654332221


Q ss_pred             eecc-c-cCcEEEEEecCCe-EEEeec-------CCcEEEEEccCCccccc-CCCCCeeEEEEeCCCCEEEE-EecCCeE
Q 023772          141 IIDS-F-QDSVMSVCLTKTE-IIGGSV-------DGTVRTFDIRVGRELSD-DLGQPVNCISMSNDGNCILA-SCLDSTL  208 (277)
Q Consensus       141 ~~~~-~-~~~~~~~~~~~~~-~~~g~~-------d~~i~i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~-~~~d~~i  208 (277)
                      .... . ...+..+.++++. ++.+..       .+.|..+|  .++.... ......+.++|+|+++.++. .+.++.|
T Consensus       126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I  203 (326)
T 2ghs_A          126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRL  203 (326)
T ss_dssp             CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEE
T ss_pred             eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEE
Confidence            1110 1 1235566666543 444432       13455555  3322111 11235678999999987644 4557899


Q ss_pred             EEEECC--CC-ceE--EEEecc-ccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCcc
Q 023772          209 RLLDRS--TG-ELL--QEYKGH-ICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSL  271 (277)
Q Consensus       209 ~~wd~~--~~-~~~--~~~~~~-~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~  271 (277)
                      .+||+.  ++ +..  +.+... .........++.++|.+.++...++.|..||. +++.+..+..+..
T Consensus       204 ~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~  271 (326)
T 2ghs_A          204 MRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGK  271 (326)
T ss_dssp             EEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCS
T ss_pred             EEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCC
Confidence            999985  55 321  122110 01122334567788877776666788999998 6777777776543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.06  E-value=1.1e-08  Score=84.41  Aligned_cols=199  Identities=15%  Similarity=0.078  Sum_probs=122.3

Q ss_pred             EEEEeCCCCEEEEEe----------CCCcEEEEcCCCCeeEEEEecc-------CccEEEEEEcCCCCEEEEEeC--CCc
Q 023772           23 AARFNGDGNYCLSCG----------KDRTIRLWNPHRGIHIKTYKSH-------GREVRDVHVTADNSKLISCGG--DRQ   83 (277)
Q Consensus        23 ~~~~~~~~~~l~s~s----------~d~~v~iwd~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~l~t~s~--d~~   83 (277)
                      .+.|+|||++++.+.          .+++|.+||+.+++.+.++..+       ......+.++|++++++.+..  +..
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~  148 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence            799999999998876          3789999999999999998754       134678999999999998864  467


Q ss_pred             EEE--EECCCCceeEEeec---------c---------cCceeEEEE--------------------------ecCCCEE
Q 023772           84 IFY--WDVSTGRVIRKFRG---------H---------ESEVNAVKF--------------------------NEYSSVV  117 (277)
Q Consensus        84 v~~--wd~~~~~~~~~~~~---------h---------~~~v~~i~~--------------------------~~~~~~l  117 (277)
                      +.+  +|+.+   +.++.-         +         .+.+..+..                          .+++..+
T Consensus       149 v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~  225 (368)
T 1mda_H          149 AGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML  225 (368)
T ss_dssp             EEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred             EEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEE
Confidence            888  98866   222210         0         000000100                          1122222


Q ss_pred             EEEeCCCcEEEEeCccCCCcceEeec------------cccCcEEEEEecCCeEEEeec---------CCcEEEEEccCC
Q 023772          118 VSAGYDQSLRAWDCRSHSTEPIQIID------------SFQDSVMSVCLTKTEIIGGSV---------DGTVRTFDIRVG  176 (277)
Q Consensus       118 ~s~~~d~~i~iwd~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~g~~---------d~~i~i~d~~~~  176 (277)
                      +..+. +.+.+.|...........+.            ........+..++..++.+..         +..+.++|+.+.
T Consensus       226 ~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~  304 (368)
T 1mda_H          226 VWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG  304 (368)
T ss_dssp             EECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC
T ss_pred             EEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC
Confidence            22223 45555554321110000000            000011334545556655432         234569999888


Q ss_pred             cccccC-CCCCeeEEEEeCCCCE-EEEEe-cCCeEEEEECCCCceEEEEecc
Q 023772          177 RELSDD-LGQPVNCISMSNDGNC-ILASC-LDSTLRLLDRSTGELLQEYKGH  225 (277)
Q Consensus       177 ~~~~~~-~~~~v~~~~~s~~~~~-l~~~~-~d~~i~~wd~~~~~~~~~~~~~  225 (277)
                      +.+... .+.....++|+|+|++ +++.. .++.|.++|+.+++.++.+...
T Consensus       305 ~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg  356 (368)
T 1mda_H          305 QTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             CEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred             eEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC
Confidence            765442 3446889999999984 56666 5999999999999999887643

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.05  E-value=2.5e-08  Score=89.63  Aligned_cols=195  Identities=12%  Similarity=0.114  Sum_probs=124.1

Q ss_pred             EEEEEeCCCCEEEEEeCCCc-------------EEEEcCCCCee--EEEEe--c-cCccEEEEEEcCCCCEEEEEe----
Q 023772           22 LAARFNGDGNYCLSCGKDRT-------------IRLWNPHRGIH--IKTYK--S-HGREVRDVHVTADNSKLISCG----   79 (277)
Q Consensus        22 ~~~~~~~~~~~l~s~s~d~~-------------v~iwd~~~~~~--~~~~~--~-h~~~v~~~~~~~~~~~l~t~s----   79 (277)
                      ..++|+ ||+.|+.++.|..             |++|++.++..  ...+.  . |.....++.++|++++|+..+    
T Consensus       178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~  256 (693)
T 3iuj_A          178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST  256 (693)
T ss_dssp             CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred             ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC
Confidence            467899 9999998888754             99999876532  33333  2 444578899999999875433    


Q ss_pred             CCCcEEEEECCCCc-eeEEeecccCceeEEEEecCCCE-EEEEeCC---CcEEEEeCccCCCcceEeeccccCcEEEEEe
Q 023772           80 GDRQIFYWDVSTGR-VIRKFRGHESEVNAVKFNEYSSV-VVSAGYD---QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCL  154 (277)
Q Consensus        80 ~d~~v~~wd~~~~~-~~~~~~~h~~~v~~i~~~~~~~~-l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  154 (277)
                      .+..+.++|++++. ....+..+....... +.+++.. ++....|   +.|..+|+..........+..+...+..+.+
T Consensus       257 ~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~s~  335 (693)
T 3iuj_A          257 SGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVLTVHS  335 (693)
T ss_dssp             SCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEE
T ss_pred             CCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEEEEEE
Confidence            22589999998763 345566666555544 5555554 4444443   6788899876543222232223222337777


Q ss_pred             cCCeEEEeec-CC--cEEEEEccCCcccc--cCCCCCeeEEEEeCCCCEEEEEecC----CeEEEEECCCCce
Q 023772          155 TKTEIIGGSV-DG--TVRTFDIRVGRELS--DDLGQPVNCISMSNDGNCILASCLD----STLRLLDRSTGEL  218 (277)
Q Consensus       155 ~~~~~~~g~~-d~--~i~i~d~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d----~~i~~wd~~~~~~  218 (277)
                      .++.++.... ++  .|++||+..+....  ......+..+.+++++..++....+    +.++.||+.+++.
T Consensus       336 ~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          336 GSGYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             ETTEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             ECCEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence            7777665544 44  58888887543221  1222346667778888777665554    7899999987754

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=99.05  E-value=5.6e-08  Score=85.38  Aligned_cols=233  Identities=14%  Similarity=0.091  Sum_probs=143.6

Q ss_pred             EEEEeCCCcEEEEcCCCCeeEEEEeccCc----cEEEEEEcCCCCEEEEEe------CCCcEEEEECCCCceeEEeeccc
Q 023772           33 CLSCGKDRTIRLWNPHRGIHIKTYKSHGR----EVRDVHVTADNSKLISCG------GDRQIFYWDVSTGRVIRKFRGHE  102 (277)
Q Consensus        33 l~s~s~d~~v~iwd~~~~~~~~~~~~h~~----~v~~~~~~~~~~~l~t~s------~d~~v~~wd~~~~~~~~~~~~h~  102 (277)
                      ++.++.|+.|..+|..+|+.+-.......    .+.+.-...+ ..++.++      .++.|..+|.++|+.+.++....
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~  202 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVK-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATG  202 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEET-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSS
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEEC-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCC
Confidence            77888899999999999988766553221    2221111123 3555554      48999999999999987765322


Q ss_pred             Cc-------------------------------------e-eEEEEecCCCEEEEEeCCC----------------cEEE
Q 023772          103 SE-------------------------------------V-NAVKFNEYSSVVVSAGYDQ----------------SLRA  128 (277)
Q Consensus       103 ~~-------------------------------------v-~~i~~~~~~~~l~s~~~d~----------------~i~i  128 (277)
                      ..                                     + ..+.+.+...+++.+..++                .|..
T Consensus       203 ~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~A  282 (599)
T 1w6s_A          203 PDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFG  282 (599)
T ss_dssp             CHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEE
T ss_pred             CccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEE
Confidence            11                                     1 1345666777777776653                7888


Q ss_pred             EeCccCCCcceEeeccc--------cCcEE-EEE-ecC---CeEEEeecCCcEEEEEccCCcccccC-------------
Q 023772          129 WDCRSHSTEPIQIIDSF--------QDSVM-SVC-LTK---TEIIGGSVDGTVRTFDIRVGRELSDD-------------  182 (277)
Q Consensus       129 wd~~~~~~~~~~~~~~~--------~~~~~-~~~-~~~---~~~~~g~~d~~i~i~d~~~~~~~~~~-------------  182 (277)
                      +|..+...........+        ..++. ... .++   ..++.++.+|.+.++|.++++.+...             
T Consensus       283 ld~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~  362 (599)
T 1w6s_A          283 RDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVD  362 (599)
T ss_dssp             EETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEEC
T ss_pred             EeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccc
Confidence            88876543322222211        11222 111 223   23666788999999998887653211             


Q ss_pred             --CCC--------------------------CeeEEEEeCCCCEEEEEe-------------------------------
Q 023772          183 --LGQ--------------------------PVNCISMSNDGNCILASC-------------------------------  203 (277)
Q Consensus       183 --~~~--------------------------~v~~~~~s~~~~~l~~~~-------------------------------  203 (277)
                        .+.                          ....++++|+...+++..                               
T Consensus       363 ~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p  442 (599)
T 1w6s_A          363 LKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGP  442 (599)
T ss_dssp             TTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECT
T ss_pred             cCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCC
Confidence              001                          123467777766554431                               


Q ss_pred             --------cCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccC
Q 023772          204 --------LDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAH  269 (277)
Q Consensus       204 --------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h  269 (277)
                              .+|.|..||+.+++.+..+.... ..  ....+...+.+++.|+.|+.++.||.++|+++-+++-.
T Consensus       443 ~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~--~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~  513 (599)
T 1w6s_A          443 KGDRQNYEGLGQIKAYNAITGDYKWEKMERF-AV--WGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIP  513 (599)
T ss_dssp             TSBTTTTBCCEEEEEECTTTCCEEEEEEESS-CC--CSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             cCCcccCCCcCeEEEEECCCCCEEeEecCCC-Cc--cCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCC
Confidence                    34789999999999887764221 11  11112234667777999999999999999999888744

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.04  E-value=1e-07  Score=83.57  Aligned_cols=236  Identities=12%  Similarity=0.078  Sum_probs=145.3

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCeeEEEEeccCc----cEEEEEEcCCCCEEEEEeC------CCcEEEEECCCCceeEEee
Q 023772           30 GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGR----EVRDVHVTADNSKLISCGG------DRQIFYWDVSTGRVIRKFR   99 (277)
Q Consensus        30 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~----~v~~~~~~~~~~~l~t~s~------d~~v~~wd~~~~~~~~~~~   99 (277)
                      +..++.++.|+.|..+|..+|+.+-.+.....    .+.+.-...+ ..++.++.      ++.|..+|.++|+.+.++.
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  193 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAK-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEET-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEEC-CEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence            45677788899999999999988776653221    2221111113 45555544      7999999999999887765


Q ss_pred             cccCc-------------------------------------e-eEEEEecCCCEEEEEeCC----------------Cc
Q 023772          100 GHESE-------------------------------------V-NAVKFNEYSSVVVSAGYD----------------QS  125 (277)
Q Consensus       100 ~h~~~-------------------------------------v-~~i~~~~~~~~l~s~~~d----------------~~  125 (277)
                      .....                                     + ..+++.+....++.+..+                +.
T Consensus       194 ~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~  273 (571)
T 2ad6_A          194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT  273 (571)
T ss_dssp             SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred             cCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEE
Confidence            32110                                     0 124566666666665532                25


Q ss_pred             EEEEeCccCCCcceEeecc--------ccCcEE-EEEecCC---eEEEeecCCcEEEEEccCCcccccC-C---------
Q 023772          126 LRAWDCRSHSTEPIQIIDS--------FQDSVM-SVCLTKT---EIIGGSVDGTVRTFDIRVGRELSDD-L---------  183 (277)
Q Consensus       126 i~iwd~~~~~~~~~~~~~~--------~~~~~~-~~~~~~~---~~~~g~~d~~i~i~d~~~~~~~~~~-~---------  183 (277)
                      |..+|..+...........        ...++. ....++.   .++.+..+|.+.++|..+++.+... .         
T Consensus       274 v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~  353 (571)
T 2ad6_A          274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKK  353 (571)
T ss_dssp             EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred             EEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccccc
Confidence            8888887654322222111        112222 1112332   3567888899999998877643210 0         


Q ss_pred             -----CCC--------------------------eeEEEEeCCCCEEEEEe-----------------------------
Q 023772          184 -----GQP--------------------------VNCISMSNDGNCILASC-----------------------------  203 (277)
Q Consensus       184 -----~~~--------------------------v~~~~~s~~~~~l~~~~-----------------------------  203 (277)
                           +.+                          ...++++|+...++...                             
T Consensus       354 ~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~  433 (571)
T 2ad6_A          354 VDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYP  433 (571)
T ss_dssp             ECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred             ccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceecc
Confidence                 011                          13467888877776653                             


Q ss_pred             --------cCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccC
Q 023772          204 --------LDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAH  269 (277)
Q Consensus       204 --------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h  269 (277)
                              .++.|..||..+++.+..+.... ..  ....+...+..++.++.|+.|+.||.++|+++-+++..
T Consensus       434 ~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~-~~--~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~  504 (571)
T 2ad6_A          434 GPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-AA--WGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMP  504 (571)
T ss_dssp             CTTSTTSCCCEEEEEECTTTCCEEEEEEESS-CC--CSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             CccccCCCCCCeEEEEECCCCCEEEEecCCC-Cc--cceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCC
Confidence                    34789999999999887775331 11  11112223566777899999999999999999888743

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.03  E-value=5.3e-08  Score=87.31  Aligned_cols=188  Identities=13%  Similarity=0.062  Sum_probs=122.0

Q ss_pred             CCCcEEEEcCCCCeeEEEEeccC-------------------------------ccEEEEEEcCCCCEEEEEeCCCc---
Q 023772           38 KDRTIRLWNPHRGIHIKTYKSHG-------------------------------REVRDVHVTADNSKLISCGGDRQ---   83 (277)
Q Consensus        38 ~d~~v~iwd~~~~~~~~~~~~h~-------------------------------~~v~~~~~~~~~~~l~t~s~d~~---   83 (277)
                      .|+.|+.||..+|+.+-.+....                               .....+.++++.++++.+..++.   
T Consensus       181 ~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~  260 (689)
T 1yiq_A          181 VRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWD  260 (689)
T ss_dssp             CBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred             CCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccc
Confidence            37899999999999887765210                               01125788888899998887764   


Q ss_pred             ----------------EEEEECCCCceeEEeec--cc-------CceeEEEEecCCC---EEEEEeCCCcEEEEeCccCC
Q 023772           84 ----------------IFYWDVSTGRVIRKFRG--HE-------SEVNAVKFNEYSS---VVVSAGYDQSLRAWDCRSHS  135 (277)
Q Consensus        84 ----------------v~~wd~~~~~~~~~~~~--h~-------~~v~~i~~~~~~~---~l~s~~~d~~i~iwd~~~~~  135 (277)
                                      |..||.++|+.+..++.  |.       .+........+++   .++.++.+|.++++|..+++
T Consensus       261 ~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~  340 (689)
T 1yiq_A          261 PKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE  340 (689)
T ss_dssp             HHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             cCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCC
Confidence                            99999999999988764  21       2222223333554   78889999999999987654


Q ss_pred             CcceEeecc--------------------------cc-------------CcEEEEEecCCeEEEee-------------
Q 023772          136 TEPIQIIDS--------------------------FQ-------------DSVMSVCLTKTEIIGGS-------------  163 (277)
Q Consensus       136 ~~~~~~~~~--------------------------~~-------------~~~~~~~~~~~~~~~g~-------------  163 (277)
                      ......+..                          ..             -.-.++......+++..             
T Consensus       341 ~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~  420 (689)
T 1yiq_A          341 LLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEA  420 (689)
T ss_dssp             EEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSC
T ss_pred             EeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccc
Confidence            320000000                          00             00012222222233221             


Q ss_pred             --------------------------------cCCcEEEEEccCCccccc-CCCCCeeEEEEeCCCCEEEEEecCCeEEE
Q 023772          164 --------------------------------VDGTVRTFDIRVGRELSD-DLGQPVNCISMSNDGNCILASCLDSTLRL  210 (277)
Q Consensus       164 --------------------------------~d~~i~i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~  210 (277)
                                                      .+|.|..||+.+++..-. ....++..-.+...+..++.++.|+.++.
T Consensus       421 ~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a  500 (689)
T 1yiq_A          421 PKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIA  500 (689)
T ss_dssp             CCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEE
T ss_pred             ccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEE
Confidence                                            147799999998875432 23334444466677888999999999999


Q ss_pred             EECCCCceEEEEecc
Q 023772          211 LDRSTGELLQEYKGH  225 (277)
Q Consensus       211 wd~~~~~~~~~~~~~  225 (277)
                      ||.++|+++..+...
T Consensus       501 ~D~~tG~~lw~~~~~  515 (689)
T 1yiq_A          501 YAADTGEKLWEQPAA  515 (689)
T ss_dssp             EETTTCCEEEEEECS
T ss_pred             EECCCCccceeeeCC
Confidence            999999999888643

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.02  E-value=7.2e-08  Score=78.16  Aligned_cols=216  Identities=12%  Similarity=0.119  Sum_probs=138.0

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEE
Q 023772           30 GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVK  109 (277)
Q Consensus        30 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~  109 (277)
                      +..+..++.++.+..+|.. ++....+..+...+.++...+++. +..++.++.+..+|.+ ++.+..+......+.++.
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~  183 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAAS  183 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCE
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeE
Confidence            4566777888999999988 777766666655667777776665 5557778999999998 887777765566677777


Q ss_pred             EecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC-eEEEeecCCcEEEEEccCCccccc-C-CCCC
Q 023772          110 FNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT-EIIGGSVDGTVRTFDIRVGRELSD-D-LGQP  186 (277)
Q Consensus       110 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~d~~i~i~d~~~~~~~~~-~-~~~~  186 (277)
                      ..+++.+.+..   +.+..+| .+..  ...........+..+..+++ .++.++.++.+..+|. .++.+.. . ....
T Consensus       184 ~d~~g~l~v~t---~~l~~~d-~~g~--~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~  256 (330)
T 3hxj_A          184 IGKDGTIYFGS---DKVYAIN-PDGT--EKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRI  256 (330)
T ss_dssp             ECTTCCEEEES---SSEEEEC-TTSC--EEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSCC
T ss_pred             EcCCCEEEEEe---CEEEEEC-CCCc--EEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCc
Confidence            77777766543   7789998 4332  12222222233444444544 5778888888888874 3332211 1 1222


Q ss_pred             eeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCc
Q 023772          187 VNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDA  260 (277)
Q Consensus       187 v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~  260 (277)
                      +..+.+.+++. |..++.++.|..+|. +++.+..+....  .........+++. +..|+.+|.+++...+..
T Consensus       257 ~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~~~~~~~--~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~  325 (330)
T 3hxj_A          257 ESSPVIGNTDT-IYFGSYDGHLYAINP-DGTEKWNFETGS--WIIATPVIDENGT-IYFGTRNGKFYALFNLEH  325 (330)
T ss_dssp             CSCCEECTTSC-EEEECTTCEEEEECT-TSCEEEEEECSS--CCCSCCEECTTCC-EEEECTTSCEEEEEC---
T ss_pred             cccceEcCCCe-EEEecCCCCEEEECC-CCcEEEEEEcCC--ccccceEEcCCCE-EEEEcCCCeEEEEecccc
Confidence            34455666665 667788889999996 677766665321  1222333435554 566888999998876643

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.00  E-value=4.6e-08  Score=87.53  Aligned_cols=191  Identities=15%  Similarity=0.128  Sum_probs=119.3

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCeeEEEEeccCcc-----------EEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe
Q 023772           30 GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGRE-----------VRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKF   98 (277)
Q Consensus        30 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~-----------v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~   98 (277)
                      +..++.++.++.|.-+|..+|+.+-.+......           ...+.+  .+.+|+.++.|+.+..+|.++|+.+.++
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  154 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ  154 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence            456777788899999999999988777643211           122333  4678888999999999999999999888


Q ss_pred             ecc-c----CceeEEEEecCCCEEEEEeC------CCcEEEEeCccCCCcceEeecccc---------------------
Q 023772           99 RGH-E----SEVNAVKFNEYSSVVVSAGY------DQSLRAWDCRSHSTEPIQIIDSFQ---------------------  146 (277)
Q Consensus        99 ~~h-~----~~v~~i~~~~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~---------------------  146 (277)
                      ..+ .    ..+.+--...+ ..++.++.      ++.|..+|..++............                     
T Consensus       155 ~~~~~~~~~~~~~~~p~v~~-~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g  233 (677)
T 1kb0_A          155 NTFEGQKGSLTITGAPRVFK-GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG  233 (677)
T ss_dssp             ETTTTCCSSCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred             cCCcCcCcCcccccCcEEEC-CEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccC
Confidence            754 1    12221111123 34444443      789999998775432111110000                     


Q ss_pred             ---------C--cEEEEEecCCeEEEeecCC-------------------cEEEEEccCCcccccC----C-------CC
Q 023772          147 ---------D--SVMSVCLTKTEIIGGSVDG-------------------TVRTFDIRVGRELSDD----L-------GQ  185 (277)
Q Consensus       147 ---------~--~~~~~~~~~~~~~~g~~d~-------------------~i~i~d~~~~~~~~~~----~-------~~  185 (277)
                               .  ....+......++.++.++                   .|..+|..+++..-..    +       ..
T Consensus       234 ~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~  313 (677)
T 1kb0_A          234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQ  313 (677)
T ss_dssp             CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred             ceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCC
Confidence                     0  1123333445566665543                   4888898888754220    1       11


Q ss_pred             CeeEEEEeCCC---CEEEEEecCCeEEEEECCCCceEEEEe
Q 023772          186 PVNCISMSNDG---NCILASCLDSTLRLLDRSTGELLQEYK  223 (277)
Q Consensus       186 ~v~~~~~s~~~---~~l~~~~~d~~i~~wd~~~~~~~~~~~  223 (277)
                      ....+....+|   ..++.++.+|.++++|..+|+++..+.
T Consensus       314 ~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~  354 (677)
T 1kb0_A          314 PMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKN  354 (677)
T ss_dssp             CCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred             CcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecccc
Confidence            22223444467   678999999999999999999987654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.00  E-value=2.4e-06  Score=67.28  Aligned_cols=231  Identities=7%  Similarity=-0.017  Sum_probs=135.9

Q ss_pred             CEEEEEeCCCcEEEEcCCCCee-----EEEEeccCccEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceeEEeecccCc
Q 023772           31 NYCLSCGKDRTIRLWNPHRGIH-----IKTYKSHGREVRDVHVTADNSKLI-SCGGDRQIFYWDVSTGRVIRKFRGHESE  104 (277)
Q Consensus        31 ~~l~s~s~d~~v~iwd~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~l~-t~s~d~~v~~wd~~~~~~~~~~~~h~~~  104 (277)
                      .+|+.+.. +.|+.+++.....     ...+......+..++++++++.|+ +-..++.|..++++.+.....+......
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~   80 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS   80 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence            34444443 4677777654321     112222234678999999766665 4456789999999766543333222346


Q ss_pred             eeEEEEecCCC-EEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEeec---CCcEEEEEccCCc-
Q 023772          105 VNAVKFNEYSS-VVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSV---DGTVRTFDIRVGR-  177 (277)
Q Consensus       105 v~~i~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~---d~~i~i~d~~~~~-  177 (277)
                      ...+++.+++. +.++....+.|.++++.....  .............+.+++  ..++.+..   .+.|..+++.... 
T Consensus        81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~--~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~  158 (267)
T 1npe_A           81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR--RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR  158 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred             ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE--EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc
Confidence            68899998654 555555678899998764321  112221112345555554  34444433   3678788775322 


Q ss_pred             -ccccCCCCCeeEEEEeCCCCEE-EEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEE
Q 023772          178 -ELSDDLGQPVNCISMSNDGNCI-LASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFW  255 (277)
Q Consensus       178 -~~~~~~~~~v~~~~~s~~~~~l-~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iw  255 (277)
                       .+........+.+++++++..| ++-...+.|..+|.........+.+.   ......++. ++.+.++....+.|..+
T Consensus       159 ~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~---~~P~gi~~d-~~~lyva~~~~~~v~~~  234 (267)
T 1npe_A          159 RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL---QYPFAVTSY-GKNLYYTDWKTNSVIAM  234 (267)
T ss_dssp             EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC---CSEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred             EEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC---CCceEEEEe-CCEEEEEECCCCeEEEE
Confidence             1111122457889999987655 55556789999999755443333321   112223333 34445555567899999


Q ss_pred             ECcCccceeeecc
Q 023772          256 DLVDASVVAKFKA  268 (277)
Q Consensus       256 d~~~~~~~~~~~~  268 (277)
                      |..+++.+.++..
T Consensus       235 d~~~g~~~~~i~~  247 (267)
T 1npe_A          235 DLAISKEMDTFHP  247 (267)
T ss_dssp             ETTTTEEEEEECC
T ss_pred             eCCCCCceEEEcc
Confidence            9999998888863

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.99  E-value=9e-07  Score=71.79  Aligned_cols=246  Identities=10%  Similarity=0.034  Sum_probs=143.2

Q ss_pred             ccccccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEec--------------------cCccEEE
Q 023772            6 LPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKS--------------------HGREVRD   65 (277)
Q Consensus         6 ~~~~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~--------------------h~~~v~~   65 (277)
                      +|..+.-.+.+--....+++++++|++++++..++.|..||..++... .+..                    ....+..
T Consensus         6 ~~~~~~i~~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~g   84 (322)
T 2fp8_A            6 SPILKEILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYD   84 (322)
T ss_dssp             ----CEEEEECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEE
T ss_pred             CCccceeecCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCce
Confidence            343333334443344567889999997888888999999998765432 3321                    0124788


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeec-----ccCceeEEEEec-CCCEEEEEeC-----------------
Q 023772           66 VHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRG-----HESEVNAVKFNE-YSSVVVSAGY-----------------  122 (277)
Q Consensus        66 ~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~-----h~~~v~~i~~~~-~~~~l~s~~~-----------------  122 (277)
                      +++.+++..|+.+...+.+..+|..+++. ..+..     .....+.+.+.+ ++++.++...                 
T Consensus        85 i~~~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~  163 (322)
T 2fp8_A           85 ISYNLQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDK  163 (322)
T ss_dssp             EEEETTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCC
T ss_pred             EEEcCCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCC
Confidence            99997334555554555588888776542 22221     123467899999 8888776533                 


Q ss_pred             CCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEe-ecCCcEEEEEccCCc----ccccCCCCCeeEEEEeCC
Q 023772          123 DQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGG-SVDGTVRTFDIRVGR----ELSDDLGQPVNCISMSND  195 (277)
Q Consensus       123 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g-~~d~~i~i~d~~~~~----~~~~~~~~~v~~~~~s~~  195 (277)
                      ++.|..||.........  ... ......+.+++  ..++.+ ...+.|..|++....    ........ ...++++++
T Consensus       164 ~g~v~~~d~~~~~~~~~--~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~  239 (322)
T 2fp8_A          164 TGRLIKYDPSTKETTLL--LKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNAD  239 (322)
T ss_dssp             CEEEEEEETTTTEEEEE--EEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTT
T ss_pred             CceEEEEeCCCCEEEEe--ccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCC
Confidence            36688888654322111  111 11122344443  445444 556889999986421    11111223 778999999


Q ss_pred             CCEEEEEec----------CCeEEEEECCCCceEEEEecccc--ceeeeeeEecCCCceEEeecCCCeEEEEECcC
Q 023772          196 GNCILASCL----------DSTLRLLDRSTGELLQEYKGHIC--KSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVD  259 (277)
Q Consensus       196 ~~~l~~~~~----------d~~i~~wd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~  259 (277)
                      |+++++...          .+.|..+|.. ++.+..+.....  ......+++ .++.+.++....+.|..+++..
T Consensus       240 G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          240 GHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             SCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred             CCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence            987776654          4678888874 777777654321  112233333 3566666666778888888753

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.97  E-value=5.5e-07  Score=70.64  Aligned_cols=192  Identities=12%  Similarity=0.026  Sum_probs=125.0

Q ss_pred             EEEEEEeCCCCEEEEEeC--CCcEEEEcCCCCeeEEEEeccCc-cEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceeE
Q 023772           21 VLAARFNGDGNYCLSCGK--DRTIRLWNPHRGIHIKTYKSHGR-EVRDVHVTADNSKLI-SCGGDRQIFYWDVSTGRVIR   96 (277)
Q Consensus        21 V~~~~~~~~~~~l~s~s~--d~~v~iwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~-t~s~d~~v~~wd~~~~~~~~   96 (277)
                      ...+.|++++.+.++.+.  ++.|++.|+.+++.+..+..... ....+++.  ++.|+ +.-.++.+.++|.++.+.+.
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~  100 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIK  100 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEE
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEE
Confidence            578999998765555553  68999999999998888753222 22345554  44554 44568899999999999998


Q ss_pred             EeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccC---cEEEEEecCCeEEEee-cCCcEEEEE
Q 023772           97 KFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQD---SVMSVCLTKTEIIGGS-VDGTVRTFD  172 (277)
Q Consensus        97 ~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~-~d~~i~i~d  172 (277)
                      ++... .+ ....+.++++.++.+..++.+.++|..+..............   ....+.+....+++.. .++.|.+.|
T Consensus       101 ~i~~g-~~-~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~~V~vID  178 (266)
T 2iwa_A          101 NFTHQ-MK-DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQTDCIARIS  178 (266)
T ss_dssp             EEECC-SS-SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEEE
T ss_pred             EEECC-CC-CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecCCCCeEEEEE
Confidence            88643 11 124455677777777788999999987654322222211111   1233333344555444 468899999


Q ss_pred             ccCCcccccC---------------CCCCeeEEEEeCCCCEE-EEEecCCeEEEEECCCC
Q 023772          173 IRVGRELSDD---------------LGQPVNCISMSNDGNCI-LASCLDSTLRLLDRSTG  216 (277)
Q Consensus       173 ~~~~~~~~~~---------------~~~~v~~~~~s~~~~~l-~~~~~d~~i~~wd~~~~  216 (277)
                      ..+++.+...               .....+.++|+|+++.+ +++...+.+...++...
T Consensus       179 ~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          179 AKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             TTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             CCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            9887643211               11356899999998755 55557788888887543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.96  E-value=3.2e-07  Score=80.55  Aligned_cols=238  Identities=17%  Similarity=0.152  Sum_probs=144.8

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCeeEEEEeccCc----cEEE-EEEcC---CCC-EEEEEe------CCCcEEEEECCCCce
Q 023772           30 GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGR----EVRD-VHVTA---DNS-KLISCG------GDRQIFYWDVSTGRV   94 (277)
Q Consensus        30 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~----~v~~-~~~~~---~~~-~l~t~s------~d~~v~~wd~~~~~~   94 (277)
                      +..++.++.|+.|.-+|..+|+.+-.+.....    .+.+ -.+..   +++ .++.++      .++.|..+|.++|+.
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~  196 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE  196 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence            45677788899999999999998876654321    1111 11111   122 566654      378999999999998


Q ss_pred             eEEeecccCc----------------------------------------e-eEEEEecCCCEEEEEeC-----------
Q 023772           95 IRKFRGHESE----------------------------------------V-NAVKFNEYSSVVVSAGY-----------  122 (277)
Q Consensus        95 ~~~~~~h~~~----------------------------------------v-~~i~~~~~~~~l~s~~~-----------  122 (277)
                      +.+.......                                        + ..+++.+...+++.+..           
T Consensus       197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~  276 (582)
T 1flg_A          197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART  276 (582)
T ss_dssp             EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred             EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence            8765421100                                        0 12455666667766553           


Q ss_pred             ---------C----CcEEEEeCccCCCcceEeeccc--------cCcEEEEE--ecCC---eEEEeecCCcEEEEEccCC
Q 023772          123 ---------D----QSLRAWDCRSHSTEPIQIIDSF--------QDSVMSVC--LTKT---EIIGGSVDGTVRTFDIRVG  176 (277)
Q Consensus       123 ---------d----~~i~iwd~~~~~~~~~~~~~~~--------~~~~~~~~--~~~~---~~~~g~~d~~i~i~d~~~~  176 (277)
                               |    +.|..+|..+...........+        ..++..-.  .+++   .++.++.+|.+.++|..++
T Consensus       277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG  356 (582)
T 1flg_A          277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNG  356 (582)
T ss_dssp             CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTC
T ss_pred             cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCC
Confidence                     2    5788888877654332222111        12222211  2332   4677889999999998877


Q ss_pred             cccccC-CC--------------C--------------------------------CeeEEEEeCCCCEEEEEe------
Q 023772          177 RELSDD-LG--------------Q--------------------------------PVNCISMSNDGNCILASC------  203 (277)
Q Consensus       177 ~~~~~~-~~--------------~--------------------------------~v~~~~~s~~~~~l~~~~------  203 (277)
                      +.+... ..              .                                ....++++|+...+++..      
T Consensus       357 ~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~  436 (582)
T 1flg_A          357 KLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKED  436 (582)
T ss_dssp             CEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEE
T ss_pred             CEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhccee
Confidence            643210 00              0                                012456777655444432      


Q ss_pred             ---------------------------cCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEE
Q 023772          204 ---------------------------LDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWD  256 (277)
Q Consensus       204 ---------------------------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd  256 (277)
                                                 .+|.|+.||+.+++.+..+.... ...  ...+...+.+++.|+.|+.++.||
T Consensus       437 ~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~--~g~~~tagglvf~g~~dg~l~A~D  513 (582)
T 1flg_A          437 YWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLW--AGVLATAGNLVFTGTGDGYFKAFD  513 (582)
T ss_dssp             EEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCC--SCCEEETTTEEEEECTTSEEEEEE
T ss_pred             eecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCc--ccceEeCCCEEEEECCCCcEEEEE
Confidence                                       26789999999999887765431 111  111222466777899999999999


Q ss_pred             CcCccceeeeccCc
Q 023772          257 LVDASVVAKFKAHS  270 (277)
Q Consensus       257 ~~~~~~~~~~~~h~  270 (277)
                      .++|+++-+++...
T Consensus       514 ~~tG~~lW~~~~~~  527 (582)
T 1flg_A          514 AKSGKELWKFQTGS  527 (582)
T ss_dssp             TTTCCEEEEEECSS
T ss_pred             CCCCCEEEEecCCC
Confidence            99999998887543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.93  E-value=3.9e-08  Score=79.76  Aligned_cols=229  Identities=17%  Similarity=0.184  Sum_probs=135.5

Q ss_pred             cEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEee
Q 023772           20 AVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFR   99 (277)
Q Consensus        20 ~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~   99 (277)
                      .+.++...++|.+ ..++.+  |..+|. +++.+..+...........+.  +..+..++.++.+..+|.+ ++....+.
T Consensus        61 ~~~~~~~~~~g~l-~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~  133 (330)
T 3hxj_A           61 IECRPSIGKDGTI-YFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFK  133 (330)
T ss_dssp             EEECCEETTTTEE-CCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEE
T ss_pred             cccceEEecCCcE-EEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEc
Confidence            3455666666654 444444  888885 554433332222222233333  5677778889999999998 77776666


Q ss_pred             cccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec-CCeEEEeecCCcEEEEEccCCcc
Q 023772          100 GHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT-KTEIIGGSVDGTVRTFDIRVGRE  178 (277)
Q Consensus       100 ~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~d~~i~i~d~~~~~~  178 (277)
                      .....+.++...+++.+ ..++.++.+..+|.. ...  ..........+..+..+ ...++.++  +.+..+| .+++.
T Consensus       134 ~~~~~~~~~~~~~~g~l-~vgt~~~~l~~~d~~-g~~--~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~  206 (330)
T 3hxj_A          134 TKKAIYATPIVSEDGTI-YVGSNDNYLYAINPD-GTE--KWRFKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGTE  206 (330)
T ss_dssp             CSSCCCSCCEECTTSCE-EEECTTSEEEEECTT-SCE--EEEEECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSCE
T ss_pred             CCCceeeeeEEcCCCEE-EEEcCCCEEEEECCC-CCE--eEEEecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCcE
Confidence            55555666777666664 456778999999976 322  11122112223333343 33456666  7888899 55543


Q ss_pred             ccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEE
Q 023772          179 LSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWD  256 (277)
Q Consensus       179 ~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd  256 (277)
                      ...  .....+.++..+++|. |..++.++.+..+|. +++.+..+.....  ........+++ .+..|+.+|.|..+|
T Consensus       207 ~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~--~~~~~~~~~~g-~l~v~t~~ggl~~~d  281 (330)
T 3hxj_A          207 KWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKR--IESSPVIGNTD-TIYFGSYDGHLYAIN  281 (330)
T ss_dssp             EEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSC--CCSCCEECTTS-CEEEECTTCEEEEEC
T ss_pred             EEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCC--ccccceEcCCC-eEEEecCCCCEEEEC
Confidence            322  1234577888888876 566677888998985 5666666553321  11222333344 566678888999999


Q ss_pred             CcCccceeeecc
Q 023772          257 LVDASVVAKFKA  268 (277)
Q Consensus       257 ~~~~~~~~~~~~  268 (277)
                      . +++.+..+..
T Consensus       282 ~-~g~~~~~~~~  292 (330)
T 3hxj_A          282 P-DGTEKWNFET  292 (330)
T ss_dssp             T-TSCEEEEEEC
T ss_pred             C-CCcEEEEEEc
Confidence            6 6777666553

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.93  E-value=2.4e-07  Score=71.99  Aligned_cols=179  Identities=12%  Similarity=0.133  Sum_probs=115.5

Q ss_pred             EEEEEEeCCCCEEEEEeCCC--cEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeEE
Q 023772           21 VLAARFNGDGNYCLSCGKDR--TIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISC-GGDRQIFYWDVSTGRVIRK   97 (277)
Q Consensus        21 V~~~~~~~~~~~l~s~s~d~--~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~-s~d~~v~~wd~~~~~~~~~   97 (277)
                      ...+.|+ ++.+..+.|.+|  .|+++|+.+++.+..+.... ......+.+.++.|... -.++.+.++|.++.+.+.+
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t  122 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS  122 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence            4778898 677777888876  99999999999988876533 33333333345555544 4588999999999999998


Q ss_pred             eecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeecc--cc-CcEEEEEecCCeEEEee-cCCcEEEEEc
Q 023772           98 FRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDS--FQ-DSVMSVCLTKTEIIGGS-VDGTVRTFDI  173 (277)
Q Consensus        98 ~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~g~-~d~~i~i~d~  173 (277)
                      +....   ....+.++++.++.+..++.|.++|..+...........  .+ .....+.+....+.+.. .+..|.+.|.
T Consensus       123 i~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp  199 (262)
T 3nol_A          123 FNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKIVRIDP  199 (262)
T ss_dssp             EECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEECT
T ss_pred             EECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEccCCeEEEEEC
Confidence            87533   223344566666666667889999987654322222211  11 12222333344555554 4678888998


Q ss_pred             cCCccccc--------------CCCCCeeEEEEeCCCCEEEEEec
Q 023772          174 RVGRELSD--------------DLGQPVNCISMSNDGNCILASCL  204 (277)
Q Consensus       174 ~~~~~~~~--------------~~~~~v~~~~~s~~~~~l~~~~~  204 (277)
                      .+++.+..              ......+.++++|+++.|+..+.
T Consensus       200 ~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          200 ETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             TTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             CCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            88764311              11235689999998877776654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.86  E-value=4.1e-06  Score=65.69  Aligned_cols=206  Identities=10%  Similarity=0.033  Sum_probs=132.9

Q ss_pred             eeEEEEeccCc--cEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceeEEeecccC-ceeEEEEecCCCEEEEEeCCCc
Q 023772           51 IHIKTYKSHGR--EVRDVHVTADNSKLISCGG--DRQIFYWDVSTGRVIRKFRGHES-EVNAVKFNEYSSVVVSAGYDQS  125 (277)
Q Consensus        51 ~~~~~~~~h~~--~v~~~~~~~~~~~l~t~s~--d~~v~~wd~~~~~~~~~~~~h~~-~v~~i~~~~~~~~l~s~~~d~~  125 (277)
                      +.+.++. |..  ....+.|++++..+++.+.  +++|.+.|+++++.+.++.-... ....+++.. +++.++.-.++.
T Consensus        10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~   87 (266)
T 2iwa_A           10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNI   87 (266)
T ss_dssp             EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSE
T ss_pred             eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCE
Confidence            3455664 443  3679999998655555543  57999999999999887653221 223455542 344455556899


Q ss_pred             EEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCCcEEEEEccCCcccccC----CC---CCeeEEEEeCCCCE
Q 023772          126 LRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDD----LG---QPVNCISMSNDGNC  198 (277)
Q Consensus       126 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~----~~---~~v~~~~~s~~~~~  198 (277)
                      +.++|..+...  +..+......-..+..++..++++..++.|.++|..+.+.....    .+   ..++.+.|. +|..
T Consensus        88 v~viD~~t~~v--~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~l  164 (266)
T 2iwa_A           88 GFIYDRRTLSN--IKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEV  164 (266)
T ss_dssp             EEEEETTTTEE--EEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred             EEEEECCCCcE--EEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEE
Confidence            99999876433  22222111122446667777766667889999999876543321    11   136788888 6754


Q ss_pred             EEEEecCCeEEEEECCCCceEEEEecccc-----------ceeeeeeEecCCCc-eEEeecCCCeEEEEECcCcc
Q 023772          199 ILASCLDSTLRLLDRSTGELLQEYKGHIC-----------KSFKTDCCLTNSDA-HVTGGSEDGYIYFWDLVDAS  261 (277)
Q Consensus       199 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~-~l~sgs~d~~i~iwd~~~~~  261 (277)
                      ++....++.|.+.|..+++.+..+.....           .....-.++.++++ +++++...+.++..++....
T Consensus       165 yvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~  239 (266)
T 2iwa_A          165 WANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR  239 (266)
T ss_dssp             EEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred             EEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence            45544678999999999999988863210           01233456788764 56778888999999887653

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.85  E-value=1.1e-06  Score=68.30  Aligned_cols=176  Identities=11%  Similarity=0.045  Sum_probs=113.4

Q ss_pred             EEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEE--EEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe
Q 023772           21 VLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRD--VHVTADNSKLISCGGDRQIFYWDVSTGRVIRKF   98 (277)
Q Consensus        21 V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~--~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~   98 (277)
                      ...+.|+. +.+..+.+.+|.|+++|+.+++.+..+ .. .....  +++.. ++..+..-.++.+.++|.++.+.+.++
T Consensus        57 tqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti  132 (268)
T 3nok_A           57 TQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTT  132 (268)
T ss_dssp             EEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred             cceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEE
Confidence            46788874 567778899999999999999887777 32 23333  45542 234444556899999999999999988


Q ss_pred             ecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccC---cEEEEEecCCeEEEee-cCCcEEEEEcc
Q 023772           99 RGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQD---SVMSVCLTKTEIIGGS-VDGTVRTFDIR  174 (277)
Q Consensus        99 ~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~-~d~~i~i~d~~  174 (277)
                      ..-.. =+.++  ++++.|+.+..++.|.++|..+..............   ....+.+....+.... .+..|.+.|..
T Consensus       133 ~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~  209 (268)
T 3nok_A          133 RYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSDVLEIDPA  209 (268)
T ss_dssp             ECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCSEEEEECTT
T ss_pred             eCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCCeEEEEeCC
Confidence            75322 23444  557777777778999999987654332222211111   2233344444555554 46788888988


Q ss_pred             CCccccc---------------CCCCCeeEEEEeCCCCEEEEEe
Q 023772          175 VGRELSD---------------DLGQPVNCISMSNDGNCILASC  203 (277)
Q Consensus       175 ~~~~~~~---------------~~~~~v~~~~~s~~~~~l~~~~  203 (277)
                      +++.+..               ....-.+.++++|+++.|+..+
T Consensus       210 TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          210 TGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             TCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             CCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            8764311               1123578999999766555544

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.83  E-value=1.5e-05  Score=72.64  Aligned_cols=238  Identities=11%  Similarity=0.122  Sum_probs=146.3

Q ss_pred             EEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEE-eccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEee
Q 023772           21 VLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTY-KSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFR   99 (277)
Q Consensus        21 V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~   99 (277)
                      |.++...+++.+.+ +..++.|..||..+++..... ..+...|.++...+++...+ |..++-+..||..+++......
T Consensus       175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~  252 (795)
T 4a2l_A          175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLH  252 (795)
T ss_dssp             CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECC
T ss_pred             eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeec
Confidence            78888888886655 555556889998776543321 12345788888887776555 4444458999988765433221


Q ss_pred             c-------ccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEee-----ccccCcEEEEEecCCe-EEEeecCC
Q 023772          100 G-------HESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQII-----DSFQDSVMSVCLTKTE-IIGGSVDG  166 (277)
Q Consensus       100 ~-------h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~g~~d~  166 (277)
                      .       ....|.++...+++.+.+.. .+ -+.+||............     ......+.++..+++. +..|+.++
T Consensus       253 ~~~~~~~l~~~~i~~i~~d~~g~lWigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~  330 (795)
T 4a2l_A          253 SPSNPKSISSNYIRSLAMDSQNRLWIGT-FN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFG  330 (795)
T ss_dssp             CTTCTTSCSCSBEEEEEECTTSCEEEEE-SS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSS
T ss_pred             CCCCccccCCCeEEEEEEcCCCCEEEEe-CC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCC
Confidence            1       13568899888888776644 44 488888754321111000     0122457777776544 88888888


Q ss_pred             cEEEEEccCCcc--ccc------CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEecc------ccceeee
Q 023772          167 TVRTFDIRVGRE--LSD------DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGH------ICKSFKT  232 (277)
Q Consensus       167 ~i~i~d~~~~~~--~~~------~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~------~~~~~~~  232 (277)
                      -|..|+......  +..      .....|.++..+++|+ |-.|..++.|..||..+++........      .....+.
T Consensus       331 Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~  409 (795)
T 4a2l_A          331 GLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIK  409 (795)
T ss_dssp             CEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEE
T ss_pred             CeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEE
Confidence            899998764421  111      1234689999999887 556777878999999876543321111      0012233


Q ss_pred             eeEecCCCceEEeecCCCeEEEEECcCccce
Q 023772          233 DCCLTNSDAHVTGGSEDGYIYFWDLVDASVV  263 (277)
Q Consensus       233 ~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~  263 (277)
                      ..+..+++..|-.|+.++-|..||..+++..
T Consensus       410 ~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~  440 (795)
T 4a2l_A          410 AVYVDEKKSLVYIGTHAGGLSILHRNSGQVE  440 (795)
T ss_dssp             EEEEETTTTEEEEEETTTEEEEEETTTCCEE
T ss_pred             EEEEcCCCCEEEEEeCcCceeEEeCCCCcEE
Confidence            3444566663555667677999998887643

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.79  E-value=3.1e-05  Score=62.20  Aligned_cols=223  Identities=9%  Similarity=-0.001  Sum_probs=131.8

Q ss_pred             CcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceeE
Q 023772           19 GAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDR--QIFYWDVSTGRVIR   96 (277)
Q Consensus        19 ~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~--~v~~wd~~~~~~~~   96 (277)
                      .....++|+++|+++++-..++.|..||...+ ....+. -...+..+++.++++.+++.....  .|..+|..+++...
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~  109 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET  109 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence            45778999999998777778899999997653 333333 245788999999998766654432  47777877776533


Q ss_pred             Eee-cccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEe---------eccccCcEEEEEecCCeE-EEeecC
Q 023772           97 KFR-GHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQI---------IDSFQDSVMSVCLTKTEI-IGGSVD  165 (277)
Q Consensus        97 ~~~-~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~-~~g~~d  165 (277)
                      ... ........+...+.+..+++...++.|..+|....... +..         ..........+..++..+ ++-...
T Consensus       110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~-v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~~  188 (306)
T 2p4o_A          110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS-IWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEK  188 (306)
T ss_dssp             EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEE-EEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTT
T ss_pred             EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEe-EEEECCccccccccCCCCcCCCcCcCCCEEEEEeCCC
Confidence            222 11223345555555555555556888888886532110 100         000011223345555554 445567


Q ss_pred             CcEEEEEccC-Ccc----cccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEec---
Q 023772          166 GTVRTFDIRV-GRE----LSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLT---  237 (277)
Q Consensus       166 ~~i~i~d~~~-~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~---  237 (277)
                      +.|..||+.. ++.    .... ......++++++|+++++....+.|.++|.. ++................+++.   
T Consensus       189 ~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~  266 (306)
T 2p4o_A          189 MLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTE  266 (306)
T ss_dssp             TEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCST
T ss_pred             CEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEeccc
Confidence            8899999864 221    0001 1245668999999987777778899999985 6553221111111234556776   


Q ss_pred             CCCceEEee
Q 023772          238 NSDAHVTGG  246 (277)
Q Consensus       238 ~~~~~l~sg  246 (277)
                      ++++.|...
T Consensus       267 ~d~~~LyVt  275 (306)
T 2p4o_A          267 GDCTAIYVV  275 (306)
T ss_dssp             TTTTEEEEE
T ss_pred             CCCCEEEEE
Confidence            665555443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.79  E-value=1.9e-05  Score=62.11  Aligned_cols=202  Identities=4%  Similarity=-0.035  Sum_probs=122.7

Q ss_pred             CcEEEEEEeCCCCEEE-EEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceeE
Q 023772           19 GAVLAARFNGDGNYCL-SCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLI-SCGGDRQIFYWDVSTGRVIR   96 (277)
Q Consensus        19 ~~V~~~~~~~~~~~l~-s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-t~s~d~~v~~wd~~~~~~~~   96 (277)
                      .....++|++++..|+ +-..++.|.+++...+.....+.........+++.++++.|+ +-...+.|.+++++......
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~  115 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence            3467899998665555 555678999999876544333333335678999999766555 44567899999987543222


Q ss_pred             EeecccCceeEEEEecCCCEEEEEeC---CCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeE-EEeecCCcEEE
Q 023772           97 KFRGHESEVNAVKFNEYSSVVVSAGY---DQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEI-IGGSVDGTVRT  170 (277)
Q Consensus        97 ~~~~h~~~v~~i~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~g~~d~~i~i  170 (277)
                      ...........+++.|++..+..+..   .+.|..+++.....  .............+.+++  ..+ ++-...+.|..
T Consensus       116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~--~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~  193 (267)
T 1npe_A          116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR--RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAEC  193 (267)
T ss_dssp             EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC--EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc--EEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEE
Confidence            22222245678999996555544443   36788887753221  111111122344555554  344 44555678999


Q ss_pred             EEccCCcccc-cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEe
Q 023772          171 FDIRVGRELS-DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYK  223 (277)
Q Consensus       171 ~d~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~  223 (277)
                      +|+....... .........+++. ++..+++....+.|..+|..+++.+..+.
T Consensus       194 ~~~~g~~~~~~~~~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~  246 (267)
T 1npe_A          194 LNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (267)
T ss_dssp             EETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             EecCCCceEEEecCCCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence            9986432211 1112334567765 44444555566899999999998887775

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.78  E-value=3.1e-06  Score=65.14  Aligned_cols=183  Identities=13%  Similarity=0.120  Sum_probs=115.8

Q ss_pred             cCCc--EEEEEEeCCCCEEEEEeCCC--cEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEE-EEeCCCcEEEEECCC
Q 023772           17 HEGA--VLAARFNGDGNYCLSCGKDR--TIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLI-SCGGDRQIFYWDVST   91 (277)
Q Consensus        17 H~~~--V~~~~~~~~~~~l~s~s~d~--~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-t~s~d~~v~~wd~~~   91 (277)
                      |...  +-.+.|++ +.+..|.+.+|  .|+++|+.+++.+....... ......+...+++|. ..-.++.+.++|.++
T Consensus        17 hd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~t   94 (243)
T 3mbr_X           17 HDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP-PYFGAGIVAWRDRLIQLTWRNHEGFVYDLAT   94 (243)
T ss_dssp             CCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTT
T ss_pred             CCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-CcceeEEEEeCCEEEEEEeeCCEEEEEECCc
Confidence            5443  56899987 56667777764  99999999999988876533 222222222344444 445689999999999


Q ss_pred             CceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeecccc---CcEEEEEecCCeEEEee-cCCc
Q 023772           92 GRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQ---DSVMSVCLTKTEIIGGS-VDGT  167 (277)
Q Consensus        92 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~-~d~~  167 (277)
                      .+.+.++...... +.++  +++..|+.+..+++|.++|..+.............   .....+.+....+.... .+..
T Consensus        95 l~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~  171 (243)
T 3mbr_X           95 LTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSR  171 (243)
T ss_dssp             TEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTE
T ss_pred             CcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCe
Confidence            9999988754322 3444  56666666667889999998765432222221111   12333444444555544 4678


Q ss_pred             EEEEEccCCccccc---------------CCCCCeeEEEEeCCCCEEEEEec
Q 023772          168 VRTFDIRVGRELSD---------------DLGQPVNCISMSNDGNCILASCL  204 (277)
Q Consensus       168 i~i~d~~~~~~~~~---------------~~~~~v~~~~~s~~~~~l~~~~~  204 (277)
                      |.+.|..+++.+..               ......+.++++|+++.|+..+.
T Consensus       172 I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          172 IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            88888887764311               11235689999998777666553

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.75  E-value=7.4e-07  Score=79.55  Aligned_cols=239  Identities=10%  Similarity=0.064  Sum_probs=132.1

Q ss_pred             EEEEeC-CCCEEEEEeCCC-----------cEEEEcCCCCeeEE--EEe-ccCccEEEEEEcCCCCEEEEEeC-CCcEEE
Q 023772           23 AARFNG-DGNYCLSCGKDR-----------TIRLWNPHRGIHIK--TYK-SHGREVRDVHVTADNSKLISCGG-DRQIFY   86 (277)
Q Consensus        23 ~~~~~~-~~~~l~s~s~d~-----------~v~iwd~~~~~~~~--~~~-~h~~~v~~~~~~~~~~~l~t~s~-d~~v~~   86 (277)
                      .+++.+ ++++++.||.+.           .+.+||+.+++...  ... .+.....++++..+++.++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            456666 888888887653           58899988875322  221 23334556778889999999884 568999


Q ss_pred             EECCCCcee--EEeecccCceeEEEEecCCCEEEEEe-CC-----CcEEEEeCccCCCcceEee--cccc--CcEEEEEe
Q 023772           87 WDVSTGRVI--RKFRGHESEVNAVKFNEYSSVVVSAG-YD-----QSLRAWDCRSHSTEPIQII--DSFQ--DSVMSVCL  154 (277)
Q Consensus        87 wd~~~~~~~--~~~~~h~~~v~~i~~~~~~~~l~s~~-~d-----~~i~iwd~~~~~~~~~~~~--~~~~--~~~~~~~~  154 (277)
                      ||..+++-.  ..+...+ .-.++...+++++++.|+ .+     ..+.+||+.+..-..+...  ....  .....+..
T Consensus       270 yd~~t~~W~~~~~~~~~R-~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~  348 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS  348 (656)
T ss_dssp             EEGGGTEEEECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred             ecCcCCceeECCCCCccc-cccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence            998876422  1121111 113455667889999988 44     5689999865321110000  0000  00000001


Q ss_pred             cCCeEEEeecC---------CcEEEEEccCCccccc---C-C-------CCCeeEEEEeC-CCCEEEEEecCC-------
Q 023772          155 TKTEIIGGSVD---------GTVRTFDIRVGRELSD---D-L-------GQPVNCISMSN-DGNCILASCLDS-------  206 (277)
Q Consensus       155 ~~~~~~~g~~d---------~~i~i~d~~~~~~~~~---~-~-------~~~v~~~~~s~-~~~~l~~~~~d~-------  206 (277)
                      ....++.|+.+         ..+..||.....-...   . .       ...-.++.|.. +++.++.|+.++       
T Consensus       349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~  428 (656)
T 1k3i_A          349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT  428 (656)
T ss_dssp             TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred             CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence            12223444333         4567788765432110   0 0       01123444443 677778877543       


Q ss_pred             ----eEEEEECCCCceEEEEe-ccccceeeeeeEecCCCceEEeecCC-----------CeEEEEECcCccc
Q 023772          207 ----TLRLLDRSTGELLQEYK-GHICKSFKTDCCLTNSDAHVTGGSED-----------GYIYFWDLVDASV  262 (277)
Q Consensus       207 ----~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~sgs~d-----------~~i~iwd~~~~~~  262 (277)
                          .+.+||..+.+...... ..........++..+++++++.|+.+           ..+.+||..+.+.
T Consensus       429 ~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W  500 (656)
T 1k3i_A          429 TNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTF  500 (656)
T ss_dssp             CCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEE
T ss_pred             CcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCce
Confidence                67888888766543320 11111112233456788888887654           5689999987654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.74  E-value=1.5e-06  Score=72.69  Aligned_cols=181  Identities=15%  Similarity=0.142  Sum_probs=116.0

Q ss_pred             EEEEEeCCCCEEEEEeCC------CcEEEEcCCCCeeEEEEeccCcc---EEEEEEcCCCCEEEEEe-------------
Q 023772           22 LAARFNGDGNYCLSCGKD------RTIRLWNPHRGIHIKTYKSHGRE---VRDVHVTADNSKLISCG-------------   79 (277)
Q Consensus        22 ~~~~~~~~~~~l~s~s~d------~~v~iwd~~~~~~~~~~~~h~~~---v~~~~~~~~~~~l~t~s-------------   79 (277)
                      ..+...|+| +++++..+      +.+.+.|..+++.+.++.....+   -..+.|+|+++.++++.             
T Consensus       141 h~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~  219 (462)
T 2ece_A          141 HTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKL  219 (462)
T ss_dssp             EEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCT
T ss_pred             cceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccch
Confidence            346678999 77777665      78999999999999888643222   34588899999999885             


Q ss_pred             ------CCCcEEEEECCCCceeEEeeccc--CceeEEEE--ecCCCEEEEEe------CCCcEEEEeCccCCCcceEee-
Q 023772           80 ------GDRQIFYWDVSTGRVIRKFRGHE--SEVNAVKF--NEYSSVVVSAG------YDQSLRAWDCRSHSTEPIQII-  142 (277)
Q Consensus        80 ------~d~~v~~wd~~~~~~~~~~~~h~--~~v~~i~~--~~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~-  142 (277)
                            .+.+|.+||+.+++.+.++....  .....+.|  +|++++++.+.      .+++|.+|..........+.+ 
T Consensus       220 ~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vId  299 (462)
T 2ece_A          220 EHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIE  299 (462)
T ss_dssp             TTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEE
T ss_pred             hhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEe
Confidence                  36899999999988887776421  22334555  89998877665      566887765432211111111 


Q ss_pred             -ccc----------------cCcEEE--EEecCCeEEE-eecCCcEEEEEccCCc---cccc-CCC-----------C--
Q 023772          143 -DSF----------------QDSVMS--VCLTKTEIIG-GSVDGTVRTFDIRVGR---ELSD-DLG-----------Q--  185 (277)
Q Consensus       143 -~~~----------------~~~~~~--~~~~~~~~~~-g~~d~~i~i~d~~~~~---~~~~-~~~-----------~--  185 (277)
                       ...                ......  ++.+++.|.+ .-..+.|.+||+....   .+.. ..+           .  
T Consensus       300 i~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~  379 (462)
T 2ece_A          300 IPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKL  379 (462)
T ss_dssp             ECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCC
T ss_pred             CCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccC
Confidence             000                112233  3444455544 4456899999985321   1110 111           1  


Q ss_pred             --CeeEEEEeCCCCEEEEEe
Q 023772          186 --PVNCISMSNDGNCILASC  203 (277)
Q Consensus       186 --~v~~~~~s~~~~~l~~~~  203 (277)
                        ..+.+.++|+|++|+++.
T Consensus       380 ~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          380 TGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CSCCCCEEECTTSSEEEEEC
T ss_pred             CCCCCEEEEcCCCCEEEEEc
Confidence              368899999999998887

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.67  E-value=1.7e-05  Score=61.55  Aligned_cols=188  Identities=11%  Similarity=0.115  Sum_probs=117.8

Q ss_pred             eEEEEeccCcc--EEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEE-eCCCcE
Q 023772           52 HIKTYKSHGRE--VRDVHVTADNSKLISCGGDR--QIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSA-GYDQSL  126 (277)
Q Consensus        52 ~~~~~~~h~~~--v~~~~~~~~~~~l~t~s~d~--~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~-~~d~~i  126 (277)
                      .+.++ .|...  ...+.|+ ++..+.+.+.+|  .|+.+|+++++.+.+..-.. ......+.+++..+... -.++.+
T Consensus        33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v  109 (262)
T 3nol_A           33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLG  109 (262)
T ss_dssp             EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEE
T ss_pred             EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEE
Confidence            44555 34443  4788888 666667777766  89999999999988876433 33333333334444444 458899


Q ss_pred             EEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCCcEEEEEccCCccccc----CCC---CCeeEEEEeCCCCEE
Q 023772          127 RAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSD----DLG---QPVNCISMSNDGNCI  199 (277)
Q Consensus       127 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~----~~~---~~v~~~~~s~~~~~l  199 (277)
                      .+||..+...  +..+.... .-..++.++..++....++.|.++|..+.+....    ..+   ..++.+.+. +|..+
T Consensus       110 ~v~D~~t~~~--~~ti~~~~-eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~ly  185 (262)
T 3nol_A          110 FVWNIRNLRQ--VRSFNYDG-EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIF  185 (262)
T ss_dssp             EEEETTTCCE--EEEEECSS-CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred             EEEECccCcE--EEEEECCC-CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEE
Confidence            9999876543  22222211 2234556666677666678899999987764432    112   235667876 67644


Q ss_pred             EEEecCCeEEEEECCCCceEEEEecccc----------ceeeeeeEecCCCce-EEee
Q 023772          200 LASCLDSTLRLLDRSTGELLQEYKGHIC----------KSFKTDCCLTNSDAH-VTGG  246 (277)
Q Consensus       200 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~-l~sg  246 (277)
                      +..-.++.|.+.|.++++.+..+.....          .....-.++.|+++. +++|
T Consensus       186 an~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          186 ANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             EEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             EEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            4444688999999999999988765311          112233567776554 4454

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.65  E-value=0.00017  Score=65.70  Aligned_cols=235  Identities=11%  Similarity=0.064  Sum_probs=143.7

Q ss_pred             CCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEec--------cCccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 023772           18 EGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKS--------HGREVRDVHVTADNSKLISCGGDRQIFYWDV   89 (277)
Q Consensus        18 ~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~--------h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~   89 (277)
                      ...|.++...++|.+. .|..++-|..||..++........        ....|.++...+++..|..|..++-+..+|.
T Consensus       356 ~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~  434 (795)
T 4a2l_A          356 DNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHR  434 (795)
T ss_dssp             CSSEEEEEECTTSCEE-EEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEET
T ss_pred             CCeeEEEEECCCCCEE-EEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeC
Confidence            3569999988888755 467777899999887654332211        2357899999888874556777777999998


Q ss_pred             CCCceeEEee-----cccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEee----ccccCcEEEEEecCCe-E
Q 023772           90 STGRVIRKFR-----GHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQII----DSFQDSVMSVCLTKTE-I  159 (277)
Q Consensus        90 ~~~~~~~~~~-----~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~  159 (277)
                      .+++... +.     .....|.++...+++++.+.. .+| +..||..+.........    ......+.++..+++. +
T Consensus       435 ~~~~~~~-~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~l  511 (795)
T 4a2l_A          435 NSGQVEN-FNQRNSQLVNENVYAILPDGEGNLWLGT-LSA-LVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRL  511 (795)
T ss_dssp             TTCCEEE-ECTTTSCCSCSCEEEEEECSSSCEEEEE-SSC-EEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCE
T ss_pred             CCCcEEE-eecCCCCcCCCeeEEEEECCCCCEEEEe-cCc-eeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCE
Confidence            8776433 32     134578888888888776654 344 88888764322111100    0112456666666543 6


Q ss_pred             EEeecCCcEEEEEccCCcc-cc---c---CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEecccc--cee
Q 023772          160 IGGSVDGTVRTFDIRVGRE-LS---D---DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHIC--KSF  230 (277)
Q Consensus       160 ~~g~~d~~i~i~d~~~~~~-~~---~---~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~--~~~  230 (277)
                      ..|+. +-|..||..+.+. +.   .   .....|.++..+++|...++ +.. .|..||..+++. ..+.....  ...
T Consensus       512 Wigt~-~Gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~~-Gl~~~d~~~~~~-~~~~~~~gl~~~~  587 (795)
T 4a2l_A          512 WIGGE-EGLSVFKQEGLDIQKASILPVSNVTKLFTNCIYEASNGIIWVG-TRE-GFYCFNEKDKQI-KRYNTTNGLPNNV  587 (795)
T ss_dssp             EEEES-SCEEEEEEETTEEEECCCSCSCGGGGSCEEEEEECTTSCEEEE-ESS-CEEEEETTTTEE-EEECGGGTCSCSC
T ss_pred             EEEeC-CceEEEeCCCCeEEEecCCCCCCCCCCeeEEEEECCCCCEEEE-eCC-CceeECCCCCcE-EEeCCCCCCchhh
Confidence            67776 5578888765542 11   0   12246889999999985444 444 588999877654 34432211  112


Q ss_pred             eeeeEecCCCceEEeecCCCeEEEEECcCccc
Q 023772          231 KTDCCLTNSDAHVTGGSEDGYIYFWDLVDASV  262 (277)
Q Consensus       231 ~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~  262 (277)
                      +......++|.+-+++ . +-|..||..+++.
T Consensus       588 i~~i~~d~~g~lWi~t-~-~Gl~~~~~~~~~~  617 (795)
T 4a2l_A          588 VYGILEDSFGRLWLST-N-RGISCFNPETEKF  617 (795)
T ss_dssp             EEEEEECTTSCEEEEE-T-TEEEEEETTTTEE
T ss_pred             eEEEEECCCCCEEEEc-C-CceEEEcCCCCcE
Confidence            2333445566655544 3 4477788776543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.60  E-value=5e-06  Score=74.32  Aligned_cols=187  Identities=12%  Similarity=0.126  Sum_probs=119.3

Q ss_pred             CCcEEEEcCCCCeeEEEEeccC-------------------------------ccEEEEEEcCCCCEEEEEeCCC-----
Q 023772           39 DRTIRLWNPHRGIHIKTYKSHG-------------------------------REVRDVHVTADNSKLISCGGDR-----   82 (277)
Q Consensus        39 d~~v~iwd~~~~~~~~~~~~h~-------------------------------~~v~~~~~~~~~~~l~t~s~d~-----   82 (277)
                      ++.|..+|..+|+.+-.+....                               .....+++.++.++++.++.++     
T Consensus       177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~  256 (668)
T 1kv9_A          177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR  256 (668)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence            5899999999999887775311                               0112467888888888887766     


Q ss_pred             --------------cEEEEECCCCceeEEeec--cc-------CceeEEEEecCCC---EEEEEeCCCcEEEEeCccCCC
Q 023772           83 --------------QIFYWDVSTGRVIRKFRG--HE-------SEVNAVKFNEYSS---VVVSAGYDQSLRAWDCRSHST  136 (277)
Q Consensus        83 --------------~v~~wd~~~~~~~~~~~~--h~-------~~v~~i~~~~~~~---~l~s~~~d~~i~iwd~~~~~~  136 (277)
                                    .|..+|.++|+.+..++.  |.       .+.....+..+++   .++.++.+|.+.++|..+++.
T Consensus       257 ~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  336 (668)
T 1kv9_A          257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL  336 (668)
T ss_dssp             HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence                          499999999999888764  22       2333333334554   688899999999999876543


Q ss_pred             cce---------Eeecc-ccCc--------------------------EEEEEecCCeEEE-------------------
Q 023772          137 EPI---------QIIDS-FQDS--------------------------VMSVCLTKTEIIG-------------------  161 (277)
Q Consensus       137 ~~~---------~~~~~-~~~~--------------------------~~~~~~~~~~~~~-------------------  161 (277)
                      ...         ..+.. ...+                          ..++......++.                   
T Consensus       337 l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~  416 (668)
T 1kv9_A          337 ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTR  416 (668)
T ss_dssp             EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCC
T ss_pred             eccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccc
Confidence            200         00000 0000                          0111111111111                   


Q ss_pred             -----------------eecCCcEEEEEccCCccccc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEe
Q 023772          162 -----------------GSVDGTVRTFDIRVGRELSD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYK  223 (277)
Q Consensus       162 -----------------g~~d~~i~i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~  223 (277)
                                       ...+|.|..||+.+++..-. ....+.....+...+..++.++.|+.++.||.++++.+..+.
T Consensus       417 ~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~  496 (668)
T 1kv9_A          417 KAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE  496 (668)
T ss_dssp             SSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEec
Confidence                             11347899999998875432 233344444455578889999999999999999999998876


Q ss_pred             cc
Q 023772          224 GH  225 (277)
Q Consensus       224 ~~  225 (277)
                      ..
T Consensus       497 ~~  498 (668)
T 1kv9_A          497 AQ  498 (668)
T ss_dssp             CS
T ss_pred             CC
Confidence            43

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.59  E-value=1.9e-05  Score=68.42  Aligned_cols=195  Identities=13%  Similarity=0.100  Sum_probs=117.9

Q ss_pred             CCCEEEEE-eCCCcEEEEECCCCceeEEeec-ccCceeEEEE-e-cCCCEEEEEe------------------CCCcEEE
Q 023772           71 DNSKLISC-GGDRQIFYWDVSTGRVIRKFRG-HESEVNAVKF-N-EYSSVVVSAG------------------YDQSLRA  128 (277)
Q Consensus        71 ~~~~l~t~-s~d~~v~~wd~~~~~~~~~~~~-h~~~v~~i~~-~-~~~~~l~s~~------------------~d~~i~i  128 (277)
                      ++++++.. ..+.+|.+.|+.+.++...+.- .......+.+ . |++++++.++                  .++.+.+
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv  179 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  179 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence            67776555 4567899999999987773321 2245677887 4 8999988874                  3457788


Q ss_pred             EeCccCCCcceEeeccccCcEEEEEecCCeEEEeecC--------------------------------------CcEEE
Q 023772          129 WDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVD--------------------------------------GTVRT  170 (277)
Q Consensus       129 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d--------------------------------------~~i~i  170 (277)
                      .|..+............+.. ..+..++..+++.+.+                                      +.+.+
T Consensus       180 ID~~t~~v~~qI~Vgg~pd~-~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V  258 (595)
T 1fwx_A          180 VDADKWEVAWQVLVSGNLDN-CDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV  258 (595)
T ss_dssp             EETTTTEEEEEEEESSCCCC-EEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred             EECCCCeEEEEEEeCCCccc-eEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence            88765322111111111111 1222233333333221                                      24667


Q ss_pred             EEccC--Ccc-c-ccCCCCCeeEEEEeCCCCEEEEEe-cCCeEEEEECCCCc------------eEEEEeccccceeeee
Q 023772          171 FDIRV--GRE-L-SDDLGQPVNCISMSNDGNCILASC-LDSTLRLLDRSTGE------------LLQEYKGHICKSFKTD  233 (277)
Q Consensus       171 ~d~~~--~~~-~-~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~wd~~~~~------------~~~~~~~~~~~~~~~~  233 (277)
                      .|.++  ++. + ....+....++.++|||+++++++ .+.++.++|+.+.+            .+.....-   .-...
T Consensus       259 ID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG---~gP~h  335 (595)
T 1fwx_A          259 VDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG---LGPLH  335 (595)
T ss_dssp             EECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC---SCEEE
T ss_pred             EeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCC---CCcce
Confidence            77766  322 1 112234567899999999876654 67899999998653            22222211   12355


Q ss_pred             eEecCCCceEEeecCCCeEEEEECcC----------ccceeeeccC
Q 023772          234 CCLTNSDAHVTGGSEDGYIYFWDLVD----------ASVVAKFKAH  269 (277)
Q Consensus       234 ~~~~~~~~~l~sgs~d~~i~iwd~~~----------~~~~~~~~~h  269 (277)
                      .+|+++|....+...|++|..||+..          ...+.++..|
T Consensus       336 ~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~  381 (595)
T 1fwx_A          336 TAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH  381 (595)
T ss_dssp             EEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS
T ss_pred             EEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecc
Confidence            67899994444677899999999988          4566777665

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.55  E-value=0.00046  Score=62.84  Aligned_cols=238  Identities=11%  Similarity=0.106  Sum_probs=141.6

Q ss_pred             CcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEe-------ccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 023772           19 GAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYK-------SHGREVRDVHVTADNSKLISCGGDRQIFYWDVST   91 (277)
Q Consensus        19 ~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~   91 (277)
                      ..|.++...++|.+.+.. .+ -+.+||..+++......       .....|.++...+++...+ |...+-+.++|..+
T Consensus       211 ~~i~~i~~d~~g~lwigt-~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~  287 (781)
T 3v9f_A          211 NDVRCIYKDTNGNIWIGT-SK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWI-ATELNGIMILDLQQ  287 (781)
T ss_dssp             SSEEEEEECTTCCEEEEE-TT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEE-EESSSCEEEEETTC
T ss_pred             CceeEEEEcCCCCEEEEe-CC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEE-EeCCCCeEEECCCC
Confidence            468888888888776654 34 68999987765432211       1235689998887765444 55545688899876


Q ss_pred             CceeEEee--------------cccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEee-------ccccCcEE
Q 023772           92 GRVIRKFR--------------GHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQII-------DSFQDSVM  150 (277)
Q Consensus        92 ~~~~~~~~--------------~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-------~~~~~~~~  150 (277)
                      ++......              -....|.++...+++.+-+ |+.++-|..++............       ......+.
T Consensus       288 ~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~  366 (781)
T 3v9f_A          288 NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWI-GTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVS  366 (781)
T ss_dssp             C---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEE-EEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEE
T ss_pred             CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEE-EecCCeEEEeCCCCCcceeeccCccccccCCCCCcceE
Confidence            65322111              1245788888888887655 55566688888764322111100       01224577


Q ss_pred             EEEecC-CeEEEeecCCcEEEEEccCCcccc-----cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEec
Q 023772          151 SVCLTK-TEIIGGSVDGTVRTFDIRVGRELS-----DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKG  224 (277)
Q Consensus       151 ~~~~~~-~~~~~g~~d~~i~i~d~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~  224 (277)
                      ++..++ ..+..|+.++-|..||..++....     ......|.++..+++|. |..|..++.+..+|..+++.. .+..
T Consensus       367 ~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~  444 (781)
T 3v9f_A          367 SVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQ-IIEL  444 (781)
T ss_dssp             EEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEE-ECCS
T ss_pred             EEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEE-Eecc
Confidence            777765 458888877778889876543211     11235688999888887 455777777999999877543 3321


Q ss_pred             c-ccceeeeeeEecCCCceEEeecCCCeEEEEECcCcccee
Q 023772          225 H-ICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVA  264 (277)
Q Consensus       225 ~-~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~  264 (277)
                      . .....+......+++.+.+ |+. +-|..||..+++...
T Consensus       445 ~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~  483 (781)
T 3v9f_A          445 EKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIH  483 (781)
T ss_dssp             TTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCE
T ss_pred             CCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEe
Confidence            1 1111223333445555444 344 458899988776543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.47  E-value=1.5e-05  Score=72.22  Aligned_cols=193  Identities=8%  Similarity=0.005  Sum_probs=108.9

Q ss_pred             ccCC-cEEEEEEe-CCCCEEEEE-eCC----CcEEEEcCCCC-eeEE-EEeccCccEEEEEEcCCCCEEEEEeCC-----
Q 023772           16 GHEG-AVLAARFN-GDGNYCLSC-GKD----RTIRLWNPHRG-IHIK-TYKSHGREVRDVHVTADNSKLISCGGD-----   81 (277)
Q Consensus        16 ~H~~-~V~~~~~~-~~~~~l~s~-s~d----~~v~iwd~~~~-~~~~-~~~~h~~~v~~~~~~~~~~~l~t~s~d-----   81 (277)
                      +|.- .+...+|| |||++|+-. +.+    .+|+++|+.++ +.+. .+.   .....+.|+|+++.|+-...|     
T Consensus       170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~  246 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRE  246 (751)
T ss_dssp             TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCE
T ss_pred             CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCC
Confidence            3443 67889999 999988843 333    35999999988 6321 121   123568899999888776654     


Q ss_pred             CcEEEEECCCCce--eEEee-cccCceeEEEEecCCCEEEEEeC---CCcEEEEeCccCCCcc--eEeeccccCcEEEEE
Q 023772           82 RQIFYWDVSTGRV--IRKFR-GHESEVNAVKFNEYSSVVVSAGY---DQSLRAWDCRSHSTEP--IQIIDSFQDSVMSVC  153 (277)
Q Consensus        82 ~~v~~wd~~~~~~--~~~~~-~h~~~v~~i~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~  153 (277)
                      ..|..+++.+++.  ...+. .......++.++|+++.|+..+.   ...|.++|+.......  ...............
T Consensus       247 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~  326 (751)
T 2xe4_A          247 NKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQ  326 (751)
T ss_dssp             EEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEE
T ss_pred             CEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEe
Confidence            3688889887642  22222 22334567889999998776553   3457777876542222  222222233344444


Q ss_pred             -ecCCeEEEe-ecC----CcEEEEEccCCcccc---cCCCC--CeeEEEEeCCCCE-EEEEecCCe--EEEEEC
Q 023772          154 -LTKTEIIGG-SVD----GTVRTFDIRVGRELS---DDLGQ--PVNCISMSNDGNC-ILASCLDST--LRLLDR  213 (277)
Q Consensus       154 -~~~~~~~~g-~~d----~~i~i~d~~~~~~~~---~~~~~--~v~~~~~s~~~~~-l~~~~~d~~--i~~wd~  213 (277)
                       ..+..++.. ..+    ..|..+|+.......   .....  .+..+.+.  +.. +++...++.  |+++|+
T Consensus       327 ~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          327 MHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEEC
T ss_pred             eeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEec
Confidence             235554433 332    246666765421111   11222  34444444  444 455666775  455665

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.46  E-value=2.6e-05  Score=60.61  Aligned_cols=169  Identities=11%  Similarity=0.029  Sum_probs=109.0

Q ss_pred             ceeEEeeccc--CceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEE-eecCCcEE
Q 023772           93 RVIRKFRGHE--SEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIG-GSVDGTVR  169 (277)
Q Consensus        93 ~~~~~~~~h~--~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~d~~i~  169 (277)
                      +.+.++. |.  .-...+.|.. +.+..+.+.+|.|+.+|+.+.+..... +.... ....+.+.++.++. .-.++.+.
T Consensus        44 ~Vv~~~p-hd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~-FgeGit~~g~~Ly~ltw~~~~v~  119 (268)
T 3nok_A           44 HIIREYP-HATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNI-FAEGLASDGERLYQLTWTEGLLF  119 (268)
T ss_dssp             EEEEEEE-CCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTC-CEEEEEECSSCEEEEESSSCEEE
T ss_pred             EEEEEEc-CCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCc-ceeEEEEeCCEEEEEEccCCEEE
Confidence            4455663 43  3347888874 678888889999999999887654433 33211 12335556666544 44578999


Q ss_pred             EEEccCCcccccC-CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccce---eeeeeEecCCCceEEe
Q 023772          170 TFDIRVGRELSDD-LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKS---FKTDCCLTNSDAHVTG  245 (277)
Q Consensus       170 i~d~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~s  245 (277)
                      +||..+.+.+... ....-..+  .++++.|+.+..++.|+++|..+.+.+..+.-.....   ......+. +|...+.
T Consensus       120 V~D~~Tl~~~~ti~~~~eGwGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyan  196 (268)
T 3nok_A          120 TWSGMPPQRERTTRYSGEGWGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYAN  196 (268)
T ss_dssp             EEETTTTEEEEEEECSSCCCCE--EEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEE
T ss_pred             EEECCcCcEEEEEeCCCceeEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEE
Confidence            9999887655331 11111233  3567788887778999999999998887765321111   11112222 5655555


Q ss_pred             ecCCCeEEEEECcCccceeeecc
Q 023772          246 GSEDGYIYFWDLVDASVVAKFKA  268 (277)
Q Consensus       246 gs~d~~i~iwd~~~~~~~~~~~~  268 (277)
                      ...++.|.+.|..++++++.+..
T Consensus       197 vw~s~~I~vIDp~TG~V~~~Idl  219 (268)
T 3nok_A          197 IWHSSDVLEIDPATGTVVGVIDA  219 (268)
T ss_dssp             ETTCSEEEEECTTTCBEEEEEEC
T ss_pred             ECCCCeEEEEeCCCCcEEEEEEC
Confidence            55688999999999999988864

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.43  E-value=5e-05  Score=58.46  Aligned_cols=169  Identities=13%  Similarity=0.023  Sum_probs=105.3

Q ss_pred             ceeEEeeccc--CceeEEEEecCCCEEEEEeCCC--cEEEEeCccCCCcceEeeccccCcEEEEEecCCeEE-EeecCCc
Q 023772           93 RVIRKFRGHE--SEVNAVKFNEYSSVVVSAGYDQ--SLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEII-GGSVDGT  167 (277)
Q Consensus        93 ~~~~~~~~h~--~~v~~i~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~d~~  167 (277)
                      +++.++ .|.  .-...+.|.. +.+..+.+.+|  .|+.+|+.+........+..... -..+.+.++.+. ..-.++.
T Consensus        10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~f-geGi~~~~~~ly~ltw~~~~   86 (243)
T 3mbr_X           10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYF-GAGIVAWRDRLIQLTWRNHE   86 (243)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCC-EEEEEEETTEEEEEESSSSE
T ss_pred             EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcc-eeEEEEeCCEEEEEEeeCCE
Confidence            455666 453  4567899987 56777777754  89999998765433322222211 133444555544 4456789


Q ss_pred             EEEEEccCCcccccC-CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccce---eeeeeEecCCCceE
Q 023772          168 VRTFDIRVGRELSDD-LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKS---FKTDCCLTNSDAHV  243 (277)
Q Consensus       168 i~i~d~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l  243 (277)
                      +.+||..+.+.+... .+..-..+  .+++..|+.+..++.|.++|..+.+.++.+.-.....   ......+ .+|+..
T Consensus        87 v~v~D~~tl~~~~ti~~~~~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~-~~G~ly  163 (243)
T 3mbr_X           87 GFVYDLATLTPRARFRYPGEGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEW-VNGELL  163 (243)
T ss_dssp             EEEEETTTTEEEEEEECSSCCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE-ETTEEE
T ss_pred             EEEEECCcCcEEEEEeCCCCceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEE-eCCEEE
Confidence            999999887654331 11122333  4566667777778899999999998887765421110   1111111 256555


Q ss_pred             EeecCCCeEEEEECcCccceeeec
Q 023772          244 TGGSEDGYIYFWDLVDASVVAKFK  267 (277)
Q Consensus       244 ~sgs~d~~i~iwd~~~~~~~~~~~  267 (277)
                      +..-.+..|.+.|..+++++..+.
T Consensus       164 anvw~s~~I~vIDp~tG~V~~~id  187 (243)
T 3mbr_X          164 ANVWLTSRIARIDPASGKVVAWID  187 (243)
T ss_dssp             EEETTTTEEEEECTTTCBEEEEEE
T ss_pred             EEECCCCeEEEEECCCCCEEEEEE
Confidence            554567799999999999998877

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.43  E-value=4.1e-05  Score=67.29  Aligned_cols=196  Identities=15%  Similarity=0.167  Sum_probs=122.0

Q ss_pred             CCEEEEEeC-CCcEEEEEC-CCCceeEEeecccCc-----------eeEEEEecCCCE----EEEEeCCCcEEEEeCccC
Q 023772           72 NSKLISCGG-DRQIFYWDV-STGRVIRKFRGHESE-----------VNAVKFNEYSSV----VVSAGYDQSLRAWDCRSH  134 (277)
Q Consensus        72 ~~~l~t~s~-d~~v~~wd~-~~~~~~~~~~~h~~~-----------v~~i~~~~~~~~----l~s~~~d~~i~iwd~~~~  134 (277)
                      +..++.++. ++.|.-+|. ++|+.+.++......           ...+.+.|.+..    ++.++.|+.+..+|..+.
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            466777777 899999999 899998877543211           123455333334    788889999999998776


Q ss_pred             CCcceEeecccc--CcEE-EEEecCCeEEEee------cCCcEEEEEccCCccccc-CCCC-------------------
Q 023772          135 STEPIQIIDSFQ--DSVM-SVCLTKTEIIGGS------VDGTVRTFDIRVGRELSD-DLGQ-------------------  185 (277)
Q Consensus       135 ~~~~~~~~~~~~--~~~~-~~~~~~~~~~~g~------~d~~i~i~d~~~~~~~~~-~~~~-------------------  185 (277)
                      ............  ..+. ........++.++      .++.|+-+|.++++.+-. ....                   
T Consensus       142 ~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g  221 (599)
T 1w6s_A          142 ETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYG  221 (599)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred             CEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccccc
Confidence            432222211100  0110 0011234555555      378999999988875321 1000                   


Q ss_pred             --------------------CeeEEEEeCCCCEEEEEecC----------------CeEEEEECCCCceEEEEeccccce
Q 023772          186 --------------------PVNCISMSNDGNCILASCLD----------------STLRLLDRSTGELLQEYKGHICKS  229 (277)
Q Consensus       186 --------------------~v~~~~~s~~~~~l~~~~~d----------------~~i~~wd~~~~~~~~~~~~~~~~~  229 (277)
                                          ....++++++...+..+..+                +.|..+|..+|+.+..+.......
T Consensus       222 ~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~  301 (599)
T 1w6s_A          222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDE  301 (599)
T ss_dssp             CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCS
T ss_pred             ccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCcc
Confidence                                11245677777777777665                389999999999998876532111


Q ss_pred             -------eeeeeEec-CCC---ceEEeecCCCeEEEEECcCccceeeec
Q 023772          230 -------FKTDCCLT-NSD---AHVTGGSEDGYIYFWDLVDASVVAKFK  267 (277)
Q Consensus       230 -------~~~~~~~~-~~~---~~l~sgs~d~~i~iwd~~~~~~~~~~~  267 (277)
                             ........ .+|   ..++.++.+|.+++.|..+|+++-..+
T Consensus       302 wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          302 WDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK  350 (599)
T ss_dssp             SCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence                   00111111 356   467788999999999999999986654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.42  E-value=0.0003  Score=59.38  Aligned_cols=194  Identities=11%  Similarity=0.108  Sum_probs=109.9

Q ss_pred             cEEEEEEeC-CCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeC-CC----cEEEEECCCCc
Q 023772           20 AVLAARFNG-DGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGG-DR----QIFYWDVSTGR   93 (277)
Q Consensus        20 ~V~~~~~~~-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~-d~----~v~~wd~~~~~   93 (277)
                      ....++++| ++..|+.+...+.|+.+|+..+.... +.........+++++++++|+.+.. ++    .+...+.+ +.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~  215 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SG  215 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GT
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cc
Confidence            346789997 45556665555889999988765443 3334566889999999996655543 22    34444433 32


Q ss_pred             ee--EEeecccCceeEEEEec-CCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEe--cCCe-EEEeecCCc
Q 023772           94 VI--RKFRGHESEVNAVKFNE-YSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCL--TKTE-IIGGSVDGT  167 (277)
Q Consensus        94 ~~--~~~~~h~~~v~~i~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~g~~d~~  167 (277)
                      ..  ..+.. ......+++.| ++.++++-..++.|..++.............. ......+.+  +++. +++-...+.
T Consensus       216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~-~~~P~gia~~pdG~~lyv~d~~~~~  293 (430)
T 3tc9_A          216 FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQD-SGWEFHIQFHPSGNYAYIVVVNQHY  293 (430)
T ss_dssp             SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSS-SSCCEEEEECTTSSEEEEEETTTTE
T ss_pred             eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCC-CCcceeEEEcCCCCEEEEEECCCCE
Confidence            21  22222 23346688999 67777777778899999976432111111111 112233444  4453 444456678


Q ss_pred             EEEEEccCC--c-----ccccC---------------CCCCee-EEEEe--------CCCCEEEEEecCCeEEEEECCCC
Q 023772          168 VRTFDIRVG--R-----ELSDD---------------LGQPVN-CISMS--------NDGNCILASCLDSTLRLLDRSTG  216 (277)
Q Consensus       168 i~i~d~~~~--~-----~~~~~---------------~~~~v~-~~~~s--------~~~~~l~~~~~d~~i~~wd~~~~  216 (277)
                      |..++....  +     .+...               .. ... .+++.        ++|..+++-...+.|+.++. .+
T Consensus       294 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~-~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G  371 (430)
T 3tc9_A          294 ILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMH-APRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QG  371 (430)
T ss_dssp             EEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBS-SEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TS
T ss_pred             EEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeC-CCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CC
Confidence            888776421  1     01000               11 123 45553        44666666666778888884 45


Q ss_pred             ceE
Q 023772          217 ELL  219 (277)
Q Consensus       217 ~~~  219 (277)
                      +..
T Consensus       372 ~v~  374 (430)
T 3tc9_A          372 RVT  374 (430)
T ss_dssp             EEE
T ss_pred             cEE
Confidence            443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.42  E-value=0.00059  Score=62.08  Aligned_cols=238  Identities=10%  Similarity=0.026  Sum_probs=139.5

Q ss_pred             CcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEe-------ccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 023772           19 GAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYK-------SHGREVRDVHVTADNSKLISCGGDRQIFYWDVST   91 (277)
Q Consensus        19 ~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~   91 (277)
                      ..|.++...++|.+.+ +..++-|..||..+++......       .....|.++...+++...+.. .+ -+..||..+
T Consensus       163 ~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt-~~-Gl~~~d~~~  239 (781)
T 3v9f_A          163 EQTWTATEAEDGKLYI-GHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGT-SK-GLALFNANT  239 (781)
T ss_dssp             CCEEEEEEEETTEEEE-EETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEE-TT-EEEEEETTT
T ss_pred             cceEEEEECCCCCEEE-EecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEe-CC-cHheECCCC
Confidence            4577887777776655 4555568889987765432211       113468899888887766644 44 589999877


Q ss_pred             CceeEEee-------cccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEe-------e-----ccccCcEEEE
Q 023772           92 GRVIRKFR-------GHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQI-------I-----DSFQDSVMSV  152 (277)
Q Consensus        92 ~~~~~~~~-------~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------~-----~~~~~~~~~~  152 (277)
                      ++......       .....|.++...+++.+.+ |+..+-+.++|...........       .     ......+.++
T Consensus       240 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i  318 (781)
T 3v9f_A          240 ETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWI-ATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYI  318 (781)
T ss_dssp             TEEEC-----------CCCCEEEEEECTTSEEEE-EESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEE
T ss_pred             CcEEEEEcCCCccccccCceEEEEEECCCCCEEE-EeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEE
Confidence            65432111       1245688888888776655 4553458888876543221111       0     0123456777


Q ss_pred             EecCC-eEEEeecCCcEEEEEccCCcc--cc---------cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEE
Q 023772          153 CLTKT-EIIGGSVDGTVRTFDIRVGRE--LS---------DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQ  220 (277)
Q Consensus       153 ~~~~~-~~~~g~~d~~i~i~d~~~~~~--~~---------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~  220 (277)
                      ..+.. .+..|+.++-|..|+......  +.         ......|.++..+++|. |..|..++.|..||..+++.. 
T Consensus       319 ~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~-  396 (781)
T 3v9f_A          319 FQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAI-  396 (781)
T ss_dssp             EECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEE-
T ss_pred             EEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEE-
Confidence            66654 488888888888888764421  11         01234689999998887 556666677999998765432 


Q ss_pred             EEec--cccceeeeeeEecCCCceEEeecCCCeEEEEECcCccce
Q 023772          221 EYKG--HICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVV  263 (277)
Q Consensus       221 ~~~~--~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~  263 (277)
                      .+..  ......+...+..+++.+.+ |+.++-+..+|..+++..
T Consensus       397 ~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~  440 (781)
T 3v9f_A          397 YNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQ  440 (781)
T ss_dssp             CC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEE
T ss_pred             EccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEE
Confidence            2211  00111223333344555444 566667888988776543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.39  E-value=0.0001  Score=64.59  Aligned_cols=185  Identities=15%  Similarity=0.115  Sum_probs=111.8

Q ss_pred             CCcEEEEcCCCCeeEEEEeccCcc-------------------------------------E-EEEEEcCCCCEEEEEeC
Q 023772           39 DRTIRLWNPHRGIHIKTYKSHGRE-------------------------------------V-RDVHVTADNSKLISCGG   80 (277)
Q Consensus        39 d~~v~iwd~~~~~~~~~~~~h~~~-------------------------------------v-~~~~~~~~~~~l~t~s~   80 (277)
                      ++.|..+|..+|+.+-.+......                                     + ..+++.++...++.+..
T Consensus       175 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g  254 (571)
T 2ad6_A          175 RGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSG  254 (571)
T ss_dssp             CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred             CCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECC
Confidence            799999999999988776542211                                     0 13566676667766543


Q ss_pred             C----------------CcEEEEECCCCceeEEeecc----------cCceeEEEEecCCC---EEEEEeCCCcEEEEeC
Q 023772           81 D----------------RQIFYWDVSTGRVIRKFRGH----------ESEVNAVKFNEYSS---VVVSAGYDQSLRAWDC  131 (277)
Q Consensus        81 d----------------~~v~~wd~~~~~~~~~~~~h----------~~~v~~i~~~~~~~---~l~s~~~d~~i~iwd~  131 (277)
                      +                +.|..+|.++|+.+..++..          ..++. +....+++   .++.++.+|.+.++|.
T Consensus       255 ~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~  333 (571)
T 2ad6_A          255 NPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNR  333 (571)
T ss_dssp             CCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEET
T ss_pred             CCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEEC
Confidence            2                36999999999998877532          12222 22334663   5777889999999998


Q ss_pred             ccCCCcceEeecc-c----------cCcE----------------------------EEEEecCCeEEEee---------
Q 023772          132 RSHSTEPIQIIDS-F----------QDSV----------------------------MSVCLTKTEIIGGS---------  163 (277)
Q Consensus       132 ~~~~~~~~~~~~~-~----------~~~~----------------------------~~~~~~~~~~~~g~---------  163 (277)
                      .+.+......+.. .          ..++                            .++.+....++...         
T Consensus       334 ~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~  413 (571)
T 2ad6_A          334 ENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEP  413 (571)
T ss_dssp             TTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEE
T ss_pred             CCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccc
Confidence            7653221111110 0          0000                            11111112222221         


Q ss_pred             ----------------------------cCCcEEEEEccCCccccc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECC
Q 023772          164 ----------------------------VDGTVRTFDIRVGRELSD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRS  214 (277)
Q Consensus       164 ----------------------------~d~~i~i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~  214 (277)
                                                  .++.|..||+.+++..-. ....++....+...+..++.++.|+.++.||.+
T Consensus       414 ~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~  493 (571)
T 2ad6_A          414 FMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNK  493 (571)
T ss_dssp             CCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETT
T ss_pred             cccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECC
Confidence                                        357888999988765432 222233332333456678889999999999999


Q ss_pred             CCceEEEEec
Q 023772          215 TGELLQEYKG  224 (277)
Q Consensus       215 ~~~~~~~~~~  224 (277)
                      +++++..+..
T Consensus       494 tG~~lw~~~~  503 (571)
T 2ad6_A          494 DGKELWNFKM  503 (571)
T ss_dssp             TCCEEEEEEC
T ss_pred             CCCEEEEEeC
Confidence            9999988864

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.36  E-value=1e-05  Score=72.16  Aligned_cols=222  Identities=8%  Similarity=0.057  Sum_probs=119.8

Q ss_pred             EEEEeCCCCEEEEEe-CCCcEEEEcCCCCeeEEEEeccCcc-EEEEEEcCCCCEEEEEe-CC-----CcEEEEECCCCce
Q 023772           23 AARFNGDGNYCLSCG-KDRTIRLWNPHRGIHIKTYKSHGRE-VRDVHVTADNSKLISCG-GD-----RQIFYWDVSTGRV   94 (277)
Q Consensus        23 ~~~~~~~~~~l~s~s-~d~~v~iwd~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~t~s-~d-----~~v~~wd~~~~~~   94 (277)
                      ++++..++++++.|| .+..+.+||+.+++....-..+... -.++.+.++++.++.|+ .+     ..+.+||.++++-
T Consensus       247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W  326 (656)
T 1k3i_A          247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  326 (656)
T ss_dssp             EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             cccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence            466778899999988 4568999999887654432222222 23456667888888888 44     5689999987642


Q ss_pred             eEEee-----cccCceeEEEEecCCCEEEEEeCCC---------cEEEEeCccCCCcceEeecccc---------CcEEE
Q 023772           95 IRKFR-----GHESEVNAVKFNEYSSVVVSAGYDQ---------SLRAWDCRSHSTEPIQIIDSFQ---------DSVMS  151 (277)
Q Consensus        95 ~~~~~-----~h~~~v~~i~~~~~~~~l~s~~~d~---------~i~iwd~~~~~~~~~~~~~~~~---------~~~~~  151 (277)
                      .. +.     .....-....+..++..++.++.||         .+..||......  ........         ....+
T Consensus       327 ~~-~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w--~~~~~~~~~~~~~~~~~~~~~a  403 (656)
T 1k3i_A          327 TS-LPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD--VKSAGKRQSNRGVAPDAMCGNA  403 (656)
T ss_dssp             EE-ETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE--EEEEEECEETTEECCCCBTCEE
T ss_pred             ee-CCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcce--eecCCccccccccCCCCCCCce
Confidence            21 10     0000000011123445555565554         456777654321  11111100         01122


Q ss_pred             EE---ecCCeEEEeecCC-----------cEEEEEccCCcc--cc--c-CCCCCeeEEEEeCCCCEEEEEecC-------
Q 023772          152 VC---LTKTEIIGGSVDG-----------TVRTFDIRVGRE--LS--D-DLGQPVNCISMSNDGNCILASCLD-------  205 (277)
Q Consensus       152 ~~---~~~~~~~~g~~d~-----------~i~i~d~~~~~~--~~--~-~~~~~v~~~~~s~~~~~l~~~~~d-------  205 (277)
                      +.   ..+..++.|+.++           .+.+||..+..-  +.  . .....-.+++..|+++.++.|+.+       
T Consensus       404 v~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~  483 (656)
T 1k3i_A          404 VMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFED  483 (656)
T ss_dssp             EEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCC
T ss_pred             EeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCC
Confidence            22   2344466676432           577788765431  11  1 111123455677899999998864       


Q ss_pred             ----CeEEEEECCCCceEEEEecccc-ceeeeeeEecCCCceEEeecC
Q 023772          206 ----STLRLLDRSTGELLQEYKGHIC-KSFKTDCCLTNSDAHVTGGSE  248 (277)
Q Consensus       206 ----~~i~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~sgs~  248 (277)
                          ..+.+||..+++... +..... ......+.+.++++.++.|+.
T Consensus       484 ~~~~~~v~~ydp~t~~W~~-~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          484 STPVFTPEIYVPEQDTFYK-QNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CSBCCCCEEEEGGGTEEEE-CCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCcccceEEEcCCCCceee-cCCCCCccccccHhhcCCCcEEEecCCC
Confidence                468899998765432 221111 111122345688998888774

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.35  E-value=0.0007  Score=55.45  Aligned_cols=241  Identities=6%  Similarity=-0.055  Sum_probs=138.4

Q ss_pred             CcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceeEE
Q 023772           19 GAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLI-SCGGDRQIFYWDVSTGRVIRK   97 (277)
Q Consensus        19 ~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-t~s~d~~v~~wd~~~~~~~~~   97 (277)
                      +...|.+..+++.++++  ....|+..++........+. ....+..++|++.++.|+ +-...+.|..++++.+.....
T Consensus        34 d~~~C~~~~~~~~ll~~--~~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~  110 (349)
T 3v64_C           34 DRRSCKALGPEPVLLFA--NRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV  110 (349)
T ss_dssp             TSSCEEESSSCCEEEEE--CBSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             CCCcccccccCceeEee--cccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEE
Confidence            33445555554433333  34568888876654443333 334578999997666665 445678899999887654333


Q ss_pred             eecccCceeEEEEecC-CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--Ce-EEEeecC-CcEEEEE
Q 023772           98 FRGHESEVNAVKFNEY-SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TE-IIGGSVD-GTVRTFD  172 (277)
Q Consensus        98 ~~~h~~~v~~i~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~g~~d-~~i~i~d  172 (277)
                      ..........+++.+. +++..+-...+.|.+.++....  ..............+.+++  .. +++-... +.|..++
T Consensus       111 ~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~--~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~  188 (349)
T 3v64_C          111 VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH--RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS  188 (349)
T ss_dssp             ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             EeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc--eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEe
Confidence            3323344577899875 4455666667889999876432  1222222223344555553  33 3444444 6788888


Q ss_pred             ccCCcc--cccCCCCCeeEEEEeCCCCEE-EEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCC
Q 023772          173 IRVGRE--LSDDLGQPVNCISMSNDGNCI-LASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSED  249 (277)
Q Consensus       173 ~~~~~~--~~~~~~~~v~~~~~s~~~~~l-~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d  249 (277)
                      +.....  +........+.++++|++..| ++-...+.|..+|+........+....  ......++ .++....+-...
T Consensus       189 ~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~--~~P~giav-~~~~ly~td~~~  265 (349)
T 3v64_C          189 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGL--PHPFAITV-FEDSLYWTDWHT  265 (349)
T ss_dssp             TTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC--SSEEEEEE-ETTEEEEEETTT
T ss_pred             CCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCC--CCceEEEE-ECCEEEEecCCC
Confidence            754321  111122357899999866555 444566789999986433322222221  12222334 345555566677


Q ss_pred             CeEEEEECcCccceeeec
Q 023772          250 GYIYFWDLVDASVVAKFK  267 (277)
Q Consensus       250 ~~i~iwd~~~~~~~~~~~  267 (277)
                      +.|..+|..+|+.+..+.
T Consensus       266 ~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          266 KSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             TEEEEEETTTCCSCEEEE
T ss_pred             CeEEEEEccCCCccEEec
Confidence            888888877777666654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.32  E-value=0.00072  Score=54.14  Aligned_cols=203  Identities=9%  Similarity=0.063  Sum_probs=116.4

Q ss_pred             CeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCC--cEE
Q 023772           50 GIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQ--SLR  127 (277)
Q Consensus        50 ~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~--~i~  127 (277)
                      .+.+..+... .....++|+++++.+++-..++.|..||.+.+ ....+. -......+++.++++++++.....  .|.
T Consensus        22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~   98 (306)
T 2p4o_A           22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVV   98 (306)
T ss_dssp             EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEE
Confidence            3445555432 46788999999887777768899999998754 333232 234678899999999776654432  366


Q ss_pred             EEeCccCCCcceEeeccccCcEEEEE-ecCCeEE-EeecCCcEEEEEccCCc-ccc---------cCCC--CCeeEEEEe
Q 023772          128 AWDCRSHSTEPIQIIDSFQDSVMSVC-LTKTEII-GGSVDGTVRTFDIRVGR-ELS---------DDLG--QPVNCISMS  193 (277)
Q Consensus       128 iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~g~~d~~i~i~d~~~~~-~~~---------~~~~--~~v~~~~~s  193 (277)
                      .+|..+.....+...... ....... +....++ +-..++.|..+|...++ .+.         ....  ...+.+  +
T Consensus        99 ~~d~~~g~~~~~~~~~~~-~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s  175 (306)
T 2p4o_A           99 SLVKSDGTVETLLTLPDA-IFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--K  175 (306)
T ss_dssp             EEECTTSCEEEEEECTTC-SCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--E
T ss_pred             EEcCCCCeEEEEEeCCCc-cccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--C
Confidence            666554432221111111 1111121 2233333 33357888888876431 110         1111  234555  7


Q ss_pred             CCCCEE-EEEecCCeEEEEECCC-Cce--EEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccc
Q 023772          194 NDGNCI-LASCLDSTLRLLDRST-GEL--LQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASV  262 (277)
Q Consensus       194 ~~~~~l-~~~~~d~~i~~wd~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~  262 (277)
                      |++++| ++-...+.|+.||+.. ++.  ...+...   ......++.++|++.++....+.|..+|.. +++
T Consensus       176 ~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~---~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~  244 (306)
T 2p4o_A          176 RFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ---TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RST  244 (306)
T ss_dssp             EETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES---CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCE
T ss_pred             cCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc---CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCE
Confidence            888755 4455678999999864 332  1222111   123345677888877776667889999975 655

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.31  E-value=0.0006  Score=54.99  Aligned_cols=189  Identities=12%  Similarity=0.066  Sum_probs=107.2

Q ss_pred             cEEEEEEeC-CCCEEEEEeCCCcEEEEcCCCCeeEEEEec-----cCccEEEEEEcC-CCCEEEEEeC------------
Q 023772           20 AVLAARFNG-DGNYCLSCGKDRTIRLWNPHRGIHIKTYKS-----HGREVRDVHVTA-DNSKLISCGG------------   80 (277)
Q Consensus        20 ~V~~~~~~~-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-----h~~~v~~~~~~~-~~~~l~t~s~------------   80 (277)
                      .+..+++.+ +|+++ .+...+.+..+|..++.. ..+..     .......+++.+ ++...++-..            
T Consensus        81 ~p~gi~~~~~~g~l~-v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~  158 (322)
T 2fp8_A           81 RTYDISYNLQNNQLY-IVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM  158 (322)
T ss_dssp             CEEEEEEETTTTEEE-EEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHH
T ss_pred             CCceEEEcCCCCcEE-EEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceeh
Confidence            468899997 66544 444445588899776542 22221     113468899999 8877776532            


Q ss_pred             -----CCcEEEEECCCCceeEEeecccCceeEEEEecCCCEE-EEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEe
Q 023772           81 -----DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVV-VSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCL  154 (277)
Q Consensus        81 -----d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  154 (277)
                           ++.|..+|..+++...... .-...+.++++++++.+ ++-..++.|..|++..........+..... ...+..
T Consensus       159 ~~~~~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~  236 (322)
T 2fp8_A          159 DTSDKTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKR  236 (322)
T ss_dssp             HHTCCCEEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEE
T ss_pred             cccCCCceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEE
Confidence                 3678899987776432222 22344679999998854 454667889999986432111122111222 344455


Q ss_pred             cCCe-EEEeec-----------CCcEEEEEccCCcccc---cCC---CCCeeEEEEeCCCCEEEEEecCCeEEEEECC
Q 023772          155 TKTE-IIGGSV-----------DGTVRTFDIRVGRELS---DDL---GQPVNCISMSNDGNCILASCLDSTLRLLDRS  214 (277)
Q Consensus       155 ~~~~-~~~g~~-----------d~~i~i~d~~~~~~~~---~~~---~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~  214 (277)
                      +++. ++.+..           .+.|..+|.. ++.+.   ...   -..+.++++ .++..+++....+.|..+++.
T Consensus       237 d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          237 NADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             CTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred             CCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence            4432 433332           3456677753 33221   111   123555665 356555565567788888775

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.27  E-value=0.00036  Score=55.65  Aligned_cols=229  Identities=11%  Similarity=0.086  Sum_probs=111.0

Q ss_pred             CCCEEEEEe-CC-----CcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCc----
Q 023772           29 DGNYCLSCG-KD-----RTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGD-----RQIFYWDVSTGR----   93 (277)
Q Consensus        29 ~~~~l~s~s-~d-----~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d-----~~v~~wd~~~~~----   93 (277)
                      ++.+++.|| .+     ..+.+||+.+++....-..............++..++.|+.+     ..+.+||..+++    
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W   93 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVW   93 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCee
Confidence            345555665 32     478889988765433211111111111222356666777654     468899987755    


Q ss_pred             -eeEEeecccCceeEEEEecCCCEEEEEeCC-----CcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecC--
Q 023772           94 -VIRKFRGHESEVNAVKFNEYSSVVVSAGYD-----QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVD--  165 (277)
Q Consensus        94 -~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d--  165 (277)
                       .+..+......- ++.. .++++++.|+.+     ..+.+||+.+..-..+............+...+..++.|+.+  
T Consensus        94 ~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~  171 (301)
T 2vpj_A           94 YSVAPMNVRRGLA-GATT-LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGL  171 (301)
T ss_dssp             EEECCCSSCCBSC-EEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSS
T ss_pred             EECCCCCCCccce-eEEE-ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCC
Confidence             222222111111 1222 256677777654     357888876542221111111111122233344445666654  


Q ss_pred             ---CcEEEEEccCCc--ccccC-CCCCeeEEEEeCCCCEEEEEecC-----CeEEEEECCCCceEEEEeccccceeeeee
Q 023772          166 ---GTVRTFDIRVGR--ELSDD-LGQPVNCISMSNDGNCILASCLD-----STLRLLDRSTGELLQEYKGHICKSFKTDC  234 (277)
Q Consensus       166 ---~~i~i~d~~~~~--~~~~~-~~~~v~~~~~s~~~~~l~~~~~d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  234 (277)
                         ..+.+||+.+.+  .+... ....-.++.. .++..++.|+.+     ..+.+||..+++.... ...........+
T Consensus       172 ~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~-~~~p~~r~~~~~  249 (301)
T 2vpj_A          172 NILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV-TSMTTPRCYVGA  249 (301)
T ss_dssp             CBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEE-CCCSSCCBSCEE
T ss_pred             cccceEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcEEEC-CCCCCcccceeE
Confidence               458889987653  11111 1111112222 256677777654     4688999987754332 211111111112


Q ss_pred             EecCCCceEEeecCC-----CeEEEEECcCccc
Q 023772          235 CLTNSDAHVTGGSED-----GYIYFWDLVDASV  262 (277)
Q Consensus       235 ~~~~~~~~l~sgs~d-----~~i~iwd~~~~~~  262 (277)
                      +. -++++++.|+.+     ..+.+||.++.+.
T Consensus       250 ~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  281 (301)
T 2vpj_A          250 TV-LRGRLYAIAGYDGNSLLSSIECYDPIIDSW  281 (301)
T ss_dssp             EE-ETTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred             EE-ECCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence            22 255665655544     4688999987654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.23  E-value=0.0016  Score=54.91  Aligned_cols=200  Identities=11%  Similarity=0.060  Sum_probs=112.3

Q ss_pred             cEEEEEEeCC--CCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCC---Cc-EEEEECCCCc
Q 023772           20 AVLAARFNGD--GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGD---RQ-IFYWDVSTGR   93 (277)
Q Consensus        20 ~V~~~~~~~~--~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d---~~-v~~wd~~~~~   93 (277)
                      ....++++++  +..|+.+...+.|+.+|+.++..... .........++++++++.+++-...   .. +...+...+.
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~  218 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF  218 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence            3568899984  34444444448999999887765443 3344568999999999955554321   12 3333332221


Q ss_pred             ee-EEeecccCceeEEEEec-CCCEEEEEeCCCcEEEEeCccCCC-cceEeeccccC-cEEEEEecCCeE-EEeecCCcE
Q 023772           94 VI-RKFRGHESEVNAVKFNE-YSSVVVSAGYDQSLRAWDCRSHST-EPIQIIDSFQD-SVMSVCLTKTEI-IGGSVDGTV  168 (277)
Q Consensus        94 ~~-~~~~~h~~~v~~i~~~~-~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~-~~g~~d~~i  168 (277)
                      .. ..+. .-.....+++.+ ++.+.++-..++.|..+|...... ..+........ .-.++..+++.+ ++-...+.|
T Consensus       219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I  297 (433)
T 4hw6_A          219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCI  297 (433)
T ss_dssp             CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEE
T ss_pred             ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEE
Confidence            10 1121 223345688888 677777766788899998764322 11111111111 113333344434 444556788


Q ss_pred             EEEEccC--Cc-----ccccC--------------CCCCeeEEEE---------eCCCCEEEEEecCCeEEEEECCCCce
Q 023772          169 RTFDIRV--GR-----ELSDD--------------LGQPVNCISM---------SNDGNCILASCLDSTLRLLDRSTGEL  218 (277)
Q Consensus       169 ~i~d~~~--~~-----~~~~~--------------~~~~v~~~~~---------s~~~~~l~~~~~d~~i~~wd~~~~~~  218 (277)
                      +.+++..  +.     .+...              .-.....+++         .++|.++++-...+.|+.++. ++. 
T Consensus       298 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~-  375 (433)
T 4hw6_A          298 YRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR-  375 (433)
T ss_dssp             EEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE-
T ss_pred             EEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC-
Confidence            8877642  21     00000              0123667899         778887777777889999985 454 


Q ss_pred             EEEEe
Q 023772          219 LQEYK  223 (277)
Q Consensus       219 ~~~~~  223 (277)
                      +..+.
T Consensus       376 v~t~~  380 (433)
T 4hw6_A          376 VTTYA  380 (433)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            34443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.22  E-value=0.00099  Score=51.80  Aligned_cols=199  Identities=11%  Similarity=0.127  Sum_probs=121.5

Q ss_pred             eeeccCCcEEEEEEeCCCCEEEE-EeCCCcEEEEcCCCCeeEEEEec-cCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772           13 VLKGHEGAVLAARFNGDGNYCLS-CGKDRTIRLWNPHRGIHIKTYKS-HGREVRDVHVTADNSKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        13 ~l~~H~~~V~~~~~~~~~~~l~s-~s~d~~v~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~   90 (277)
                      .+.|=.+.+..++|+|++..|++ ...++.|...|.. ++.++.+.- -......+++.+++.++++.-.++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            34455567999999998776654 6778888888987 777777643 23578889999888777776667889999876


Q ss_pred             CCce---eEEee------cccCceeEEEEecCCCEEEEEeCCCcEEEEeCccC-CCcceEeec---------cccCcEEE
Q 023772           91 TGRV---IRKFR------GHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSH-STEPIQIID---------SFQDSVMS  151 (277)
Q Consensus        91 ~~~~---~~~~~------~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~---------~~~~~~~~  151 (277)
                      ....   +....      ..+....+++++|.++.|.++.......+|..... ......+..         .......+
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            5432   22221      23445689999999877777766555555555310 000111111         01112233


Q ss_pred             EEecCCe-EEEeecCCcEEEEEccCCcccc---cC--------CCCCeeEEEEeCCCCEEEEEecCCeEEEEECC
Q 023772          152 VCLTKTE-IIGGSVDGTVRTFDIRVGRELS---DD--------LGQPVNCISMSNDGNCILASCLDSTLRLLDRS  214 (277)
Q Consensus       152 ~~~~~~~-~~~g~~d~~i~i~d~~~~~~~~---~~--------~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~  214 (277)
                      +.+.... ++.....+.|..+|.... ...   ..        .-.....|+|+++|+.+++ ++-+.++.|...
T Consensus       180 ~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~~  252 (255)
T 3qqz_A          180 FNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTPQ  252 (255)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC-
T ss_pred             EcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEec
Confidence            3333333 445555667777776532 111   01        1135788999999985555 677777776543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.20  E-value=0.00093  Score=54.18  Aligned_cols=193  Identities=11%  Similarity=0.245  Sum_probs=116.7

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCC-------E-EEEEeC--CCcEEEEeCccCCCcceE
Q 023772           71 DNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSS-------V-VVSAGY--DQSLRAWDCRSHSTEPIQ  140 (277)
Q Consensus        71 ~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~-------~-l~s~~~--d~~i~iwd~~~~~~~~~~  140 (277)
                      ...++++...++-+.+||+ +|+.+..+..  ..++.++.-|.-.       + +++.-.  +++|.+|++..... ++.
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l~  114 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TLQ  114 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CEE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-cee
Confidence            3456776777788999999 7888877753  5677777766421       2 333333  58899997632211 122


Q ss_pred             eecc-------ccCcEEEEEe--cC--C--eEEEeecCCcEEEEEccC---C----ccccc-CCCCCeeEEEEeCCCCEE
Q 023772          141 IIDS-------FQDSVMSVCL--TK--T--EIIGGSVDGTVRTFDIRV---G----RELSD-DLGQPVNCISMSNDGNCI  199 (277)
Q Consensus       141 ~~~~-------~~~~~~~~~~--~~--~--~~~~g~~d~~i~i~d~~~---~----~~~~~-~~~~~v~~~~~s~~~~~l  199 (277)
                      ....       ....+..+++  ++  .  ++++...+|.+..|++..   +    +.+.. ..+..+..+..++....|
T Consensus       115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~L  194 (355)
T 3amr_A          115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRL  194 (355)
T ss_dssp             ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEE
T ss_pred             eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeE
Confidence            2211       0022333333  32  2  477778889999999842   1    22222 235678888999988899


Q ss_pred             EEEecCCeEEEEECC-----CCceEEEEe-cccc-ceeeeeeEecCCCc-eEEeec-CCCeEEEEECc-Cccceeeec
Q 023772          200 LASCLDSTLRLLDRS-----TGELLQEYK-GHIC-KSFKTDCCLTNSDA-HVTGGS-EDGYIYFWDLV-DASVVAKFK  267 (277)
Q Consensus       200 ~~~~~d~~i~~wd~~-----~~~~~~~~~-~~~~-~~~~~~~~~~~~~~-~l~sgs-~d~~i~iwd~~-~~~~~~~~~  267 (277)
                      +.+-+|..|..++..     +++++..+. ++.. ....+.....++++ ||++++ .++...+||.. +.+.+..|.
T Consensus       195 yv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             EEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             EEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence            999999888777854     345665543 2211 12222222234444 555444 67789999997 677888775

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.17  E-value=0.002  Score=53.50  Aligned_cols=202  Identities=8%  Similarity=-0.028  Sum_probs=120.3

Q ss_pred             CcEEEEEEeCCCCEE-EEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeE
Q 023772           19 GAVLAARFNGDGNYC-LSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKL-ISCGGDRQIFYWDVSTGRVIR   96 (277)
Q Consensus        19 ~~V~~~~~~~~~~~l-~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~t~s~d~~v~~wd~~~~~~~~   96 (277)
                      .....++|++.+..| ++-...+.|..+++..+.....+.........+++.+.+..| ++-...+.|.+.+++......
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~  195 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  195 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence            346789999755544 455567888889887655444443333456788998765555 555567789998887544333


Q ss_pred             EeecccCceeEEEEecCCCEEEEE-eCC-CcEEEEeCccCCCcceEeeccccCcEEEEEec--CCeE-EEeecCCcEEEE
Q 023772           97 KFRGHESEVNAVKFNEYSSVVVSA-GYD-QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT--KTEI-IGGSVDGTVRTF  171 (277)
Q Consensus        97 ~~~~h~~~v~~i~~~~~~~~l~s~-~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~g~~d~~i~i~  171 (277)
                      .+.........+++.|.+..|+.+ ..+ +.|...++....  ..............+.++  ...| ++-+..+.|..+
T Consensus       196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~--~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~  273 (386)
T 3v65_B          196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG--RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA  273 (386)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred             eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC--cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEE
Confidence            333333566889999866554444 344 678888765432  122222222223445554  3344 444556788888


Q ss_pred             EccCCcc--cccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEe
Q 023772          172 DIRVGRE--LSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYK  223 (277)
Q Consensus       172 d~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~  223 (277)
                      |+.....  +..........+++ .++..+.+-...+.|..+|..+++.+..+.
T Consensus       274 d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          274 NLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             CTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             eCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence            8754321  21112235677888 355566676778889999976676655554

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.17  E-value=0.00031  Score=63.71  Aligned_cols=192  Identities=12%  Similarity=0.084  Sum_probs=102.5

Q ss_pred             cEEEEEEc-CCCCEEEEEe-CC----CcEEEEECCCC-ceeEE-eecccCceeEEEEecCCCEEEEEeCC-----CcEEE
Q 023772           62 EVRDVHVT-ADNSKLISCG-GD----RQIFYWDVSTG-RVIRK-FRGHESEVNAVKFNEYSSVVVSAGYD-----QSLRA  128 (277)
Q Consensus        62 ~v~~~~~~-~~~~~l~t~s-~d----~~v~~wd~~~~-~~~~~-~~~h~~~v~~i~~~~~~~~l~s~~~d-----~~i~i  128 (277)
                      .+....|+ |++++|+-+. .+    .+|+++|++++ +.+.. +..   ...++.|+||++.|+....|     ..|..
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            67889999 9999887443 22    35999999998 63321 211   13467899999888777765     35777


Q ss_pred             EeCccCCCcceEeecc-ccCcEEEEEecC--CeEEEeec---CCcEEEEEccCCc------ccccCCCCCeeEEEEeCCC
Q 023772          129 WDCRSHSTEPIQIIDS-FQDSVMSVCLTK--TEIIGGSV---DGTVRTFDIRVGR------ELSDDLGQPVNCISMSNDG  196 (277)
Q Consensus       129 wd~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~g~~---d~~i~i~d~~~~~------~~~~~~~~~v~~~~~s~~~  196 (277)
                      +++.+.......++.. .......+.+++  ..++..+.   ...|.++|+..+.      .+.........++.|+..+
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~  331 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS  331 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC
Confidence            7776543322333321 122234444544  44554332   3457788887642      1222223345555555444


Q ss_pred             CEEEEEecC----CeEEEEECCCCceEEE-EeccccceeeeeeEecCCCceEEeecCCCeEE--EEEC
Q 023772          197 NCILASCLD----STLRLLDRSTGELLQE-YKGHICKSFKTDCCLTNSDAHVTGGSEDGYIY--FWDL  257 (277)
Q Consensus       197 ~~l~~~~~d----~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~--iwd~  257 (277)
                      .+++.+..+    ..|..+|+.+....+. +..+..........+. ++.++++...|+..+  ++|+
T Consensus       332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          332 HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred             EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence            444444433    3677777764211122 2222211122222232 345566777788644  5564

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.17  E-value=0.00032  Score=61.63  Aligned_cols=193  Identities=17%  Similarity=0.168  Sum_probs=117.2

Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeEEeecccCc---------eeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEee
Q 023772           72 NSKLISCGGDRQIFYWDVSTGRVIRKFRGHESE---------VNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQII  142 (277)
Q Consensus        72 ~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~---------v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  142 (277)
                      +..++.++.++.|.-+|.++|+.+.++......         ...+.+  .+..++.++.|+.+..+|..+++.......
T Consensus        68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~  145 (582)
T 1flg_A           68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKF  145 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred             CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence            345655666445999999999998877644221         012222  245777788999999999877654322222


Q ss_pred             ccc-------cCcEEEEEecC----C-eEEEee------cCCcEEEEEccCCcccccCCC--------------------
Q 023772          143 DSF-------QDSVMSVCLTK----T-EIIGGS------VDGTVRTFDIRVGRELSDDLG--------------------  184 (277)
Q Consensus       143 ~~~-------~~~~~~~~~~~----~-~~~~g~------~d~~i~i~d~~~~~~~~~~~~--------------------  184 (277)
                      ...       ..++.  . ..    . .++.+.      .++.|.-+|..+++.+-....                    
T Consensus       146 ~~~~~~~~~~~sP~v--~-~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g  222 (582)
T 1flg_A          146 ADHGAGYTMTGAPTI--V-KDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVK  222 (582)
T ss_dssp             SCGGGTCBCCSCCEE--E-ECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTT
T ss_pred             CCCCcCcccccCCEE--e-CCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccc
Confidence            111       11111  1 11    1 455554      378899899887764321100                    


Q ss_pred             -----------------------CCeeEEEEeCCCCEEEEEec--------------------C----CeEEEEECCCCc
Q 023772          185 -----------------------QPVNCISMSNDGNCILASCL--------------------D----STLRLLDRSTGE  217 (277)
Q Consensus       185 -----------------------~~v~~~~~s~~~~~l~~~~~--------------------d----~~i~~wd~~~~~  217 (277)
                                             .....++++|+...+..+..                    |    +.|..+|..+|+
T Consensus       223 ~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~  302 (582)
T 1flg_A          223 APSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGE  302 (582)
T ss_dssp             CTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCC
T ss_pred             cccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCC
Confidence                                   01134677787777776653                    2    589999999999


Q ss_pred             eEEEEec--cccc-----eeeeeeEec-CCC---ceEEeecCCCeEEEEECcCccceeeeccC
Q 023772          218 LLQEYKG--HICK-----SFKTDCCLT-NSD---AHVTGGSEDGYIYFWDLVDASVVAKFKAH  269 (277)
Q Consensus       218 ~~~~~~~--~~~~-----~~~~~~~~~-~~~---~~l~sgs~d~~i~iwd~~~~~~~~~~~~h  269 (277)
                      .+..+..  |...     ......... .+|   ..++.++.+|.++++|..+|+++-.++..
T Consensus       303 ~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~  365 (582)
T 1flg_A          303 VKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFV  365 (582)
T ss_dssp             EEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESS
T ss_pred             EEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccc
Confidence            9988753  2110     001111111 356   37888999999999999999998766543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.16  E-value=0.002  Score=52.74  Aligned_cols=200  Identities=9%  Similarity=-0.029  Sum_probs=119.2

Q ss_pred             cEEEEEEeCCCCEEE-EEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEE
Q 023772           20 AVLAARFNGDGNYCL-SCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKL-ISCGGDRQIFYWDVSTGRVIRK   97 (277)
Q Consensus        20 ~V~~~~~~~~~~~l~-s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~t~s~d~~v~~wd~~~~~~~~~   97 (277)
                      ....++|++....|+ +-...+.|..+++..+.....+.........+++.+.+..| ++-...+.|.+.+++.......
T Consensus        74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l  153 (349)
T 3v64_C           74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL  153 (349)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             ceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEE
Confidence            357889997555544 55567888888887654444443333456789998765555 5556678999999875543322


Q ss_pred             eecccCceeEEEEecCCCE-EEEEeCC-CcEEEEeCccCCCcceEeeccccCcEEEEEec--CCeE-EEeecCCcEEEEE
Q 023772           98 FRGHESEVNAVKFNEYSSV-VVSAGYD-QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT--KTEI-IGGSVDGTVRTFD  172 (277)
Q Consensus        98 ~~~h~~~v~~i~~~~~~~~-l~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~g~~d~~i~i~d  172 (277)
                      ....-....++++.|.+.. +.+-..+ +.|...++.....  .............+.++  ...+ ++-...+.|..+|
T Consensus       154 ~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~--~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~  231 (349)
T 3v64_C          154 LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR--RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN  231 (349)
T ss_dssp             ECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC--EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc--EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEe
Confidence            3333355688999986554 4444444 7788887754321  11112112223455554  3344 4445567888888


Q ss_pred             ccCCc--ccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEE
Q 023772          173 IRVGR--ELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEY  222 (277)
Q Consensus       173 ~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~  222 (277)
                      +....  .+..........+++. ++..+.+-...+.|..+|..+++.+..+
T Consensus       232 ~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i  282 (349)
T 3v64_C          232 LDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEII  282 (349)
T ss_dssp             TTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             CCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEe
Confidence            76432  1111222356778883 5556666667788988886666554444

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.15  E-value=0.0018  Score=52.15  Aligned_cols=223  Identities=8%  Similarity=-0.016  Sum_probs=128.5

Q ss_pred             CcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEE-EEeCCCcEEEEECCC---CceeEE-eecccCceeEEEEecCC
Q 023772           40 RTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLI-SCGGDRQIFYWDVST---GRVIRK-FRGHESEVNAVKFNEYS  114 (277)
Q Consensus        40 ~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-t~s~d~~v~~wd~~~---~~~~~~-~~~h~~~v~~i~~~~~~  114 (277)
                      ..|+..|+.+......+. ....+..++|++.++.|+ +-...+.|..++++.   +..... +...-.....+++.+.+
T Consensus        10 ~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~   88 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH   88 (316)
T ss_dssp             SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC
Confidence            578888888766554443 345678999998766555 445678999999876   122222 22222345788998654


Q ss_pred             -CEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeE-EEeecC-CcEEEEEccCCcc--cccCCCCCe
Q 023772          115 -SVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEI-IGGSVD-GTVRTFDIRVGRE--LSDDLGQPV  187 (277)
Q Consensus       115 -~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~g~~d-~~i~i~d~~~~~~--~~~~~~~~v  187 (277)
                       ++.++-..++.|.+.++.....  .............+.+++  ..+ ++.... +.|..+++.....  +....-...
T Consensus        89 ~~ly~~d~~~~~I~~~~~~g~~~--~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P  166 (316)
T 1ijq_A           89 SNIYWTDSVLGTVSVADTKGVKR--KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP  166 (316)
T ss_dssp             TEEEEEETTTTEEEEEETTSSSE--EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCE
T ss_pred             CeEEEEECCCCEEEEEeCCCCce--EEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCc
Confidence             4555656788899998764321  112221222344555543  333 333332 6787777653221  111223457


Q ss_pred             eEEEEeCCCCEEE-EEecCCeEEEEECCCCceEEEE-eccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceee
Q 023772          188 NCISMSNDGNCIL-ASCLDSTLRLLDRSTGELLQEY-KGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAK  265 (277)
Q Consensus       188 ~~~~~s~~~~~l~-~~~~d~~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~  265 (277)
                      +.+++++++..|. +-+..+.|..+|+.... .+.+ ............++. .+.+..+-...+.|..+|..+++.+..
T Consensus       167 ~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~  244 (316)
T 1ijq_A          167 NGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNL  244 (316)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEE
T ss_pred             eEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEE
Confidence            8999998766554 44566799999996433 2333 211111122233343 355556667788999999888877666


Q ss_pred             ec
Q 023772          266 FK  267 (277)
Q Consensus       266 ~~  267 (277)
                      +.
T Consensus       245 i~  246 (316)
T 1ijq_A          245 LA  246 (316)
T ss_dssp             EE
T ss_pred             Ee
Confidence            64

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.14  E-value=0.0024  Score=53.03  Aligned_cols=237  Identities=7%  Similarity=-0.044  Sum_probs=136.0

Q ss_pred             EEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceeEEeecc
Q 023772           23 AARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLI-SCGGDRQIFYWDVSTGRVIRKFRGH  101 (277)
Q Consensus        23 ~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-t~s~d~~v~~wd~~~~~~~~~~~~h  101 (277)
                      |.+..++ .+|+- +....|+..++..+....... ....+..++|.+.++.|+ +-...+.|..++++.+.....+...
T Consensus        81 C~~~~~~-~~l~~-~~~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~  157 (386)
T 3v65_B           81 CKALGPE-PVLLF-ANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG  157 (386)
T ss_dssp             EEECSSC-CEEEE-ECBSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS
T ss_pred             ECCcccc-ceeEe-ecCccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC
Confidence            4443443 34333 334678888887655444443 345678999997666555 4456788999998876543333323


Q ss_pred             cCceeEEEEecCC-CEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeE-EEeecC-CcEEEEEccCC
Q 023772          102 ESEVNAVKFNEYS-SVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEI-IGGSVD-GTVRTFDIRVG  176 (277)
Q Consensus       102 ~~~v~~i~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~g~~d-~~i~i~d~~~~  176 (277)
                      ......+++.+.+ .+.++-...+.|.+.++....  ..............+.+++  ..+ ++-... +.|..+++...
T Consensus       158 ~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~--~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~  235 (386)
T 3v65_B          158 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH--RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS  235 (386)
T ss_dssp             CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS--CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc--eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC
Confidence            3345678888754 455565667788888875432  1222222223344555553  333 343333 67777777543


Q ss_pred             cc--cccCCCCCeeEEEEeCCCCEE-EEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEE
Q 023772          177 RE--LSDDLGQPVNCISMSNDGNCI-LASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIY  253 (277)
Q Consensus       177 ~~--~~~~~~~~v~~~~~s~~~~~l-~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~  253 (277)
                      ..  +........+.++|+|++..| ++-+..+.|+.+|+........+....  ......++ ..+.+..+....+.|.
T Consensus       236 ~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~--~~P~giav-~~~~ly~td~~~~~V~  312 (386)
T 3v65_B          236 GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGL--PHPFAITV-FEDSLYWTDWHTKSIN  312 (386)
T ss_dssp             SCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSC--SSEEEEEE-ETTEEEEEETTTTEEE
T ss_pred             CcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCC--CCceEEEE-ECCEEEEeeCCCCeEE
Confidence            21  111222357899999865554 555567789999986433322232221  12223334 3455556667788899


Q ss_pred             EEECcCccceeeec
Q 023772          254 FWDLVDASVVAKFK  267 (277)
Q Consensus       254 iwd~~~~~~~~~~~  267 (277)
                      .+|..+|+.+..+.
T Consensus       313 ~~~~~~G~~~~~i~  326 (386)
T 3v65_B          313 SANKFTGKNQEIIR  326 (386)
T ss_dssp             EEETTTCCSCEEEE
T ss_pred             EEECCCCcceEEEc
Confidence            99977787766665

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=98.10  E-value=0.0012  Score=52.63  Aligned_cols=227  Identities=11%  Similarity=0.120  Sum_probs=107.7

Q ss_pred             CEEEEEeCC----CcEEEEcCCCCeeEEEEeccCcc-EEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCce--eEEe
Q 023772           31 NYCLSCGKD----RTIRLWNPHRGIHIKTYKSHGRE-VRDVHVTADNSKLISCGGD-----RQIFYWDVSTGRV--IRKF   98 (277)
Q Consensus        31 ~~l~s~s~d----~~v~iwd~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~t~s~d-----~~v~~wd~~~~~~--~~~~   98 (277)
                      .+++.||.+    ..+..||+.+.+....-...... -.++.. .++..++.|+.+     ..+.+||..+.+-  +..+
T Consensus        17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~   95 (302)
T 2xn4_A           17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANM   95 (302)
T ss_dssp             EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCC
T ss_pred             EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEE-ECCEEEEEeCcCCCccccceEEECCCCCceeeCCCC
Confidence            344455543    46788888876543321111111 112222 256666777654     3588899876542  2222


Q ss_pred             ecccCceeEEEEecCCCEEEEEeCCC-----cEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecC-------C
Q 023772           99 RGHESEVNAVKFNEYSSVVVSAGYDQ-----SLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVD-------G  166 (277)
Q Consensus        99 ~~h~~~v~~i~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d-------~  166 (277)
                      ...... .++.. -++++++.|+.++     .+.+||+.+..-..+..+.........+......++.|+.+       .
T Consensus        96 p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~  173 (302)
T 2xn4_A           96 RDRRST-LGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLS  173 (302)
T ss_dssp             SSCCBS-CEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECC
T ss_pred             Cccccc-eEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCcccc
Confidence            211111 11222 2566777777653     47778876532111111111111112223344445555542       3


Q ss_pred             cEEEEEccCCc--ccccC-CCCCeeEEEEeCCCCEEEEEecC-----CeEEEEECCCCceEEEEeccccceeeeeeEecC
Q 023772          167 TVRTFDIRVGR--ELSDD-LGQPVNCISMSNDGNCILASCLD-----STLRLLDRSTGELLQEYKGHICKSFKTDCCLTN  238 (277)
Q Consensus       167 ~i~i~d~~~~~--~~~~~-~~~~v~~~~~s~~~~~l~~~~~d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (277)
                      .+.+||+.+.+  .+... ....-.+++.. ++..++.|+.+     ..+.+||..+++... +...........++ ..
T Consensus       174 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~r~~~~~~-~~  250 (302)
T 2xn4_A          174 TVECYNATTNEWTYIAEMSTRRSGAGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQ-VADMNMCRRNAGVC-AV  250 (302)
T ss_dssp             CEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEEEE-ECCCSSCCBSCEEE-EE
T ss_pred             EEEEEeCCCCcEEECCCCccccccccEEEE-CCEEEEECCCCCCcccceEEEEeCCCCCEee-CCCCCCccccCeEE-EE
Confidence            57889987653  11111 11111122222 56777777654     368899998775432 22211111111122 22


Q ss_pred             CCceEEeecCC-----CeEEEEECcCccce
Q 023772          239 SDAHVTGGSED-----GYIYFWDLVDASVV  263 (277)
Q Consensus       239 ~~~~l~sgs~d-----~~i~iwd~~~~~~~  263 (277)
                      ++.+++.|+.+     ..+.+||..+.+..
T Consensus       251 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  280 (302)
T 2xn4_A          251 NGLLYVVGGDDGSCNLASVEYYNPTTDKWT  280 (302)
T ss_dssp             TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             CCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence            55665555544     34899999876543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.09  E-value=0.0026  Score=51.61  Aligned_cols=190  Identities=12%  Similarity=0.317  Sum_probs=118.5

Q ss_pred             CCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCC----CCE--E-EEEe-C--CCcEEEEEC--CCCceeE
Q 023772           29 DGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTAD----NSK--L-ISCG-G--DRQIFYWDV--STGRVIR   96 (277)
Q Consensus        29 ~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~----~~~--l-~t~s-~--d~~v~~wd~--~~~~~~~   96 (277)
                      ...+++...+++-+.+||+ +|+.+..+..  +.++.+.+-|+    ++.  + ++.. .  +++|.+|++  .+++ +.
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~  114 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ  114 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence            4567777788899999999 8888888753  56777777653    222  3 3333 3  578999976  3443 44


Q ss_pred             Eeec------cc-CceeEEEE--ecC-CC-EEEEEeCCCcEEEEeCccCC-----CcceEeeccccCcEEEEEecC--Ce
Q 023772           97 KFRG------HE-SEVNAVKF--NEY-SS-VVVSAGYDQSLRAWDCRSHS-----TEPIQIIDSFQDSVMSVCLTK--TE  158 (277)
Q Consensus        97 ~~~~------h~-~~v~~i~~--~~~-~~-~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~  158 (277)
                      .+..      .. ..+..+++  ++. ++ +++....+|.+..|++....     .+.+..+.. ...+-.|..++  ..
T Consensus       115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~  193 (355)
T 3amr_A          115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGR  193 (355)
T ss_dssp             ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTE
T ss_pred             eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCe
Confidence            4421      11 45556676  564 43 57778889999999985321     112222222 23344555553  45


Q ss_pred             EEEeecCCcEEEEEcc-----CCccccc----CCCCCeeEEEE--eCCCC-EEEEEe-cCCeEEEEECC-CCceEEEEe
Q 023772          159 IIGGSVDGTVRTFDIR-----VGRELSD----DLGQPVNCISM--SNDGN-CILASC-LDSTLRLLDRS-TGELLQEYK  223 (277)
Q Consensus       159 ~~~g~~d~~i~i~d~~-----~~~~~~~----~~~~~v~~~~~--s~~~~-~l~~~~-~d~~i~~wd~~-~~~~~~~~~  223 (277)
                      ++.+-.+.-|..||.+     +.+.+..    .....+..|++  .++++ ||++++ .+.+..+||.+ +.+.+..|.
T Consensus       194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence            8888888666666644     1222211    12246788887  45555 777776 56799999996 677777775

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.07  E-value=0.0014  Score=52.29  Aligned_cols=226  Identities=12%  Similarity=0.069  Sum_probs=108.6

Q ss_pred             EEEEEeC--CCcEEEEcCCCCeeEEEEeccCcc-EEEEEEcCCCCEEEEEeCC----CcEEEEECCCCce--eEEeeccc
Q 023772           32 YCLSCGK--DRTIRLWNPHRGIHIKTYKSHGRE-VRDVHVTADNSKLISCGGD----RQIFYWDVSTGRV--IRKFRGHE  102 (277)
Q Consensus        32 ~l~s~s~--d~~v~iwd~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~t~s~d----~~v~~wd~~~~~~--~~~~~~h~  102 (277)
                      +++.||.  ...+.+||+.+++....-...... -.++.. .++..++.|+.+    ..+.+||..+++-  +..+....
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r   92 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF-WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPR   92 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE-ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCC
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE-ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccc
Confidence            3344443  367888998887644321111111 112222 355666777654    5688899887642  22222111


Q ss_pred             CceeEEEEecCCCEEEEEeCC------CcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeec---------CCc
Q 023772          103 SEVNAVKFNEYSSVVVSAGYD------QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSV---------DGT  167 (277)
Q Consensus       103 ~~v~~i~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---------d~~  167 (277)
                      ..- ++. .-++++++.|+.+      ..+.+||+.+..-.....+.........+......++.|+.         -..
T Consensus        93 ~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~  170 (306)
T 3ii7_A           93 DSL-AAC-AAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNS  170 (306)
T ss_dssp             BSC-EEE-EETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCC
T ss_pred             cce-eEE-EECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccce
Confidence            111 122 2256677777765      45888887654211111111111111223334444555543         345


Q ss_pred             EEEEEccCCc--ccccCC-CCCeeEEEEeCCCCEEEEEecC-----CeEEEEECCCCceEEEEeccccceeeeeeEecCC
Q 023772          168 VRTFDIRVGR--ELSDDL-GQPVNCISMSNDGNCILASCLD-----STLRLLDRSTGELLQEYKGHICKSFKTDCCLTNS  239 (277)
Q Consensus       168 i~i~d~~~~~--~~~~~~-~~~v~~~~~s~~~~~l~~~~~d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (277)
                      +.+||+.+.+  .+.... ...-.++... +++.++.|+.+     ..+.+||..+++-.. +...........++.. +
T Consensus       171 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~~-~  247 (306)
T 3ii7_A          171 CEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKM-VSPMPWKGVTVKCAAV-G  247 (306)
T ss_dssp             EEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEE-CCCCSCCBSCCEEEEE-T
T ss_pred             EEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEE-CCCCCCCccceeEEEE-C
Confidence            7889987653  121111 1111122222 56667776643     358899998765432 2111111111112222 5


Q ss_pred             CceEEeecCC-----CeEEEEECcCccce
Q 023772          240 DAHVTGGSED-----GYIYFWDLVDASVV  263 (277)
Q Consensus       240 ~~~l~sgs~d-----~~i~iwd~~~~~~~  263 (277)
                      +.+++.|+.+     ..+.+||..+.+..
T Consensus       248 ~~i~v~GG~~~~~~~~~~~~yd~~~~~W~  276 (306)
T 3ii7_A          248 SIVYVLAGFQGVGRLGHILEYNTETDKWV  276 (306)
T ss_dssp             TEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred             CEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence            6666666533     56899999886543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.04  E-value=0.0031  Score=50.80  Aligned_cols=203  Identities=11%  Similarity=0.024  Sum_probs=119.0

Q ss_pred             CCcEEEEEEeCCCCEE-EEEeCCCcEEEEcCCC----CeeEEEEeccCccEEEEEEcCCCCEE-EEEeCCCcEEEEECCC
Q 023772           18 EGAVLAARFNGDGNYC-LSCGKDRTIRLWNPHR----GIHIKTYKSHGREVRDVHVTADNSKL-ISCGGDRQIFYWDVST   91 (277)
Q Consensus        18 ~~~V~~~~~~~~~~~l-~s~s~d~~v~iwd~~~----~~~~~~~~~h~~~v~~~~~~~~~~~l-~t~s~d~~v~~wd~~~   91 (277)
                      ......++|++.+..| ++-..++.|..+++..    ......+.........+++.+.+..| ++-...+.|.+.+++.
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g  108 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence            3456789999865544 4556678999998765    22222233233456889998755555 5556778999999875


Q ss_pred             CceeEEeecccCceeEEEEecCCCEEEEEeC-C-CcEEEEeCccCCCcceEeeccccCcEEEEEec--CCeE-EEeecCC
Q 023772           92 GRVIRKFRGHESEVNAVKFNEYSSVVVSAGY-D-QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT--KTEI-IGGSVDG  166 (277)
Q Consensus        92 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~g~~d~  166 (277)
                      ......+...-.....+++.|.+..++.+.. . +.|...++.....  .............+.++  ...+ ++-+..+
T Consensus       109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~--~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~  186 (316)
T 1ijq_A          109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--YSLVTENIQWPNGITLDLLSGRLYWVDSKLH  186 (316)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE--EEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe--EEEEECCCCCceEEEEeccCCEEEEEECCCC
Confidence            4433223323346688999986655544443 3 6788877653221  11111112234455555  3444 4445567


Q ss_pred             cEEEEEccCCc--ccccC--CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEe
Q 023772          167 TVRTFDIRVGR--ELSDD--LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYK  223 (277)
Q Consensus       167 ~i~i~d~~~~~--~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~  223 (277)
                      .|..+|+....  .+...  .......+++. ++..+++-...+.|..+|..+++.+..+.
T Consensus       187 ~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~  246 (316)
T 1ijq_A          187 SISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  246 (316)
T ss_dssp             EEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             eEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence            89999986322  12111  12345678885 45566666677899999987776655554

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.01  E-value=0.0044  Score=51.67  Aligned_cols=231  Identities=8%  Similarity=-0.019  Sum_probs=133.2

Q ss_pred             EEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEE-eCCCcEEEEECCCC----ceeEEeecccCcee
Q 023772           32 YCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISC-GGDRQIFYWDVSTG----RVIRKFRGHESEVN  106 (277)
Q Consensus        32 ~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~-s~d~~v~~wd~~~~----~~~~~~~~h~~~v~  106 (277)
                      +|+.+. ...|+..++........+ .....+..++|++.++.|+-+ ...+.|+.+++...    .....+........
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~  162 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  162 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred             eeEEec-cceeEEEccCCcceeEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence            444433 478899988766544443 345678899999876666544 45688999998752    22222332344667


Q ss_pred             EEEEecC-CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEee--cCCcEEEEEccCCcc--c
Q 023772          107 AVKFNEY-SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGS--VDGTVRTFDIRVGRE--L  179 (277)
Q Consensus       107 ~i~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~--~d~~i~i~d~~~~~~--~  179 (277)
                      .+++.+. +++..+-...+.|.+.++.....  .............+.+++  ..++...  ..+.|...++.....  +
T Consensus       163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~--~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~  240 (400)
T 3p5b_L          163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKR--KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL  240 (400)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTTCSE--EEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEE
T ss_pred             cEEEEecCCceEEEECCCCeEEEEeCCCCce--EEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEE
Confidence            8999874 55556666678899988764321  222222222344555554  3333332  236787777754321  1


Q ss_pred             ccCCCCCeeEEEEeCCCCEEEEE-ecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECc
Q 023772          180 SDDLGQPVNCISMSNDGNCILAS-CLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLV  258 (277)
Q Consensus       180 ~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~  258 (277)
                      ....-...+.|++++++..|..+ ...+.|+.+|+.....................++ ..+.+..+-...+.|..+|..
T Consensus       241 ~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~~~~  319 (400)
T 3p5b_L          241 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRL  319 (400)
T ss_dssp             ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSEEEEESS
T ss_pred             EECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeEEEEEcC
Confidence            11122467899999876665554 5567899999864433222222111112222333 234455566677889999988


Q ss_pred             Cccceeeec
Q 023772          259 DASVVAKFK  267 (277)
Q Consensus       259 ~~~~~~~~~  267 (277)
                      +|+.+..+.
T Consensus       320 ~G~~~~~i~  328 (400)
T 3p5b_L          320 TGSDVNLLA  328 (400)
T ss_dssp             SCCCCEEEE
T ss_pred             CCCceEEEe
Confidence            887776665

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.00  E-value=0.0047  Score=51.52  Aligned_cols=204  Identities=11%  Similarity=0.015  Sum_probs=119.9

Q ss_pred             cCCcEEEEEEeCCCCEEE-EEeCCCcEEEEcCCCC----eeEEEEeccCccEEEEEEcCCCCEE-EEEeCCCcEEEEECC
Q 023772           17 HEGAVLAARFNGDGNYCL-SCGKDRTIRLWNPHRG----IHIKTYKSHGREVRDVHVTADNSKL-ISCGGDRQIFYWDVS   90 (277)
Q Consensus        17 H~~~V~~~~~~~~~~~l~-s~s~d~~v~iwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l-~t~s~d~~v~~wd~~   90 (277)
                      ....+..++|++.+..|+ +-...+.|+.+++...    .....+.........+++.+.+..| ++-...+.|.+.+++
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~  189 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  189 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence            345677899998655544 5456678888887642    2233333344567889999855544 555667899999987


Q ss_pred             CCceeEEeecccCceeEEEEecCCCEEEEEe-C-CCcEEEEeCccCCCcceEeeccccCcEEEEEec--CCeEE-EeecC
Q 023772           91 TGRVIRKFRGHESEVNAVKFNEYSSVVVSAG-Y-DQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT--KTEII-GGSVD  165 (277)
Q Consensus        91 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~g~~d  165 (277)
                      .......+...-....++++.|.+..|+-+. . .+.|...++.....  .............+.++  ...|. +-...
T Consensus       190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~--~~~~~~~l~~P~glavd~~~~~lY~aD~~~  267 (400)
T 3p5b_L          190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--YSLVTENIQWPNGITLDLLSGRLYWVDSKL  267 (400)
T ss_dssp             TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC--EEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc--EEEEECCCCceEEEEEEeCCCEEEEEECCC
Confidence            6554433333344568899998665555443 2 36788888754322  22222212233445554  34444 44556


Q ss_pred             CcEEEEEccCCcc--cccC--CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEe
Q 023772          166 GTVRTFDIRVGRE--LSDD--LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYK  223 (277)
Q Consensus       166 ~~i~i~d~~~~~~--~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~  223 (277)
                      +.|..+|+.....  +...  .-.....+++. .+..+.+-...+.|..+|..+++.+..+.
T Consensus       268 ~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          268 HSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  328 (400)
T ss_dssp             TEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred             CEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence            7888888764321  2111  11245567774 44556666677889999977776655554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.91  E-value=0.0062  Score=51.33  Aligned_cols=150  Identities=10%  Similarity=0.015  Sum_probs=87.4

Q ss_pred             cEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeC-CC----cEEEEeCccCC
Q 023772           62 EVRDVHVTA-DNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGY-DQ----SLRAWDCRSHS  135 (277)
Q Consensus        62 ~v~~~~~~~-~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-d~----~i~iwd~~~~~  135 (277)
                      ....++++| ++..|+.+...+.|+.+|++++.+.. +.........++++++++.|+.+.. ++    .+...+.. ..
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~  215 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SG  215 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GT
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cc
Confidence            457889998 45666666555889999998766443 3334456788999999995555443 22    23334432 22


Q ss_pred             CcceEeeccccCcEEEEEecC---CeEEEeecCCcEEEEEccCCcc--ccc-CCCCCeeEEEEeCCCCE-EEEEecCCeE
Q 023772          136 TEPIQIIDSFQDSVMSVCLTK---TEIIGGSVDGTVRTFDIRVGRE--LSD-DLGQPVNCISMSNDGNC-ILASCLDSTL  208 (277)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~d~~i~i~d~~~~~~--~~~-~~~~~v~~~~~s~~~~~-l~~~~~d~~i  208 (277)
                      ......+... .....+.+++   ..+++-..++.|..||...+..  +.. ......+.++|+|+|++ +++-...+.|
T Consensus       216 ~~~~~~l~~~-~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I  294 (430)
T 3tc9_A          216 FKVITELTKG-QNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI  294 (430)
T ss_dssp             SCSEEEEEEC-SSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred             eeeeeeeccC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence            2211111111 1112233333   2244444567888898875542  111 11234678999999995 4555567889


Q ss_pred             EEEECC
Q 023772          209 RLLDRS  214 (277)
Q Consensus       209 ~~wd~~  214 (277)
                      +.++..
T Consensus       295 ~~~~~d  300 (430)
T 3tc9_A          295 LRSDYD  300 (430)
T ss_dssp             EEEEEE
T ss_pred             EEEeCC
Confidence            998764

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.89  E-value=0.0061  Score=49.12  Aligned_cols=223  Identities=7%  Similarity=-0.050  Sum_probs=126.7

Q ss_pred             CCcEEEEcCCCCe--eEEEEeccCccEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCcee-EEeecccCceeEEEEecC-
Q 023772           39 DRTIRLWNPHRGI--HIKTYKSHGREVRDVHVTADNSKL-ISCGGDRQIFYWDVSTGRVI-RKFRGHESEVNAVKFNEY-  113 (277)
Q Consensus        39 d~~v~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l-~t~s~d~~v~~wd~~~~~~~-~~~~~h~~~v~~i~~~~~-  113 (277)
                      ...|+..++....  ....+. .......++|.+.++.| .+-...+.|..++++.+... ..+...-....++++.+. 
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~   90 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG   90 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred             cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence            4678888877652  222222 22356789999865555 45556788999998766422 122222235567888864 


Q ss_pred             CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEee--cCCcEEEEEccCCc--ccccCCCCCe
Q 023772          114 SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGS--VDGTVRTFDIRVGR--ELSDDLGQPV  187 (277)
Q Consensus       114 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~--~d~~i~i~d~~~~~--~~~~~~~~~v  187 (277)
                      +++..+-...+.|.++++.....  .............+.+++  ..++...  ..+.|..+++....  .+....-...
T Consensus        91 g~ly~~d~~~~~I~~~~~dG~~~--~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~P  168 (318)
T 3sov_A           91 EKLYWTDSETNRIEVSNLDGSLR--KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWP  168 (318)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSC--EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCE
T ss_pred             CeEEEEECCCCEEEEEECCCCcE--EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCc
Confidence            45556656678899998764322  222222222334455443  3343333  24677777765322  1111122456


Q ss_pred             eEEEEeCCCCEE-EEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeee
Q 023772          188 NCISMSNDGNCI-LASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKF  266 (277)
Q Consensus       188 ~~~~~s~~~~~l-~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~  266 (277)
                      +.++++|++..| ++=+..+.|+.+|+..........+...  .....++. .+.+..+-...+.|..+|..+|+....+
T Consensus       169 nglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~--~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~~i  245 (318)
T 3sov_A          169 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLP--HPFALTLF-EDILYWTDWSTHSILACNKYTGEGLREI  245 (318)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCS--CEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             cEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCC--CceEEEEe-CCEEEEEecCCCeEEEEECCCCCceEEE
Confidence            899999866555 4445677899999864332222221211  12223333 3445556667889999999888776665


Q ss_pred             c
Q 023772          267 K  267 (277)
Q Consensus       267 ~  267 (277)
                      .
T Consensus       246 ~  246 (318)
T 3sov_A          246 H  246 (318)
T ss_dssp             E
T ss_pred             e
Confidence            4

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.87  E-value=0.0042  Score=49.67  Aligned_cols=229  Identities=9%  Similarity=0.004  Sum_probs=109.9

Q ss_pred             CCCEEEEEeCC----CcEEEEcCCCCeeEEEEeccCcc-EEEEEEcCCCCEEEEEeC----C-----CcEEEEECCCCce
Q 023772           29 DGNYCLSCGKD----RTIRLWNPHRGIHIKTYKSHGRE-VRDVHVTADNSKLISCGG----D-----RQIFYWDVSTGRV   94 (277)
Q Consensus        29 ~~~~l~s~s~d----~~v~iwd~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~t~s~----d-----~~v~~wd~~~~~~   94 (277)
                      ++.+++.||.+    ..+.+||+.+++....-...... -.++.. .++..++.|+.    +     ..+.+||+.+.+-
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W  102 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW  102 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCeE
Confidence            45566666632    46888998877544321111111 112222 25566666665    2     4688899876542


Q ss_pred             --eEEeecccCceeEEEEecCCCEEEEEeCC-----CcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecC--
Q 023772           95 --IRKFRGHESEVNAVKFNEYSSVVVSAGYD-----QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVD--  165 (277)
Q Consensus        95 --~~~~~~h~~~v~~i~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d--  165 (277)
                        +..+......-. +.. -++++++.|+.+     ..+.+||+.+..-.....+.........+......++.|+.+  
T Consensus       103 ~~~~~~p~~r~~~~-~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~  180 (308)
T 1zgk_A          103 SPCAPMSVPRNRIG-VGV-IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGT  180 (308)
T ss_dssp             EECCCCSSCCBTCE-EEE-ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSS
T ss_pred             eECCCCCcCccccE-EEE-ECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCC
Confidence              211211111111 222 256677776644     357888876532111111111111112233344445566654  


Q ss_pred             ---CcEEEEEccCCc--ccccC-CCCCeeEEEEeCCCCEEEEEecC-----CeEEEEECCCCceEEEEeccccceeeeee
Q 023772          166 ---GTVRTFDIRVGR--ELSDD-LGQPVNCISMSNDGNCILASCLD-----STLRLLDRSTGELLQEYKGHICKSFKTDC  234 (277)
Q Consensus       166 ---~~i~i~d~~~~~--~~~~~-~~~~v~~~~~s~~~~~l~~~~~d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  234 (277)
                         ..+.+||+.+.+  .+... ....-.+++.. ++..++.|+.+     ..+.+||+.+.+... +...........+
T Consensus       181 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~-~~~~p~~r~~~~~  258 (308)
T 1zgk_A          181 NRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTF-VAPMKHRRSALGI  258 (308)
T ss_dssp             CBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEE-CCCCSSCCBSCEE
T ss_pred             CcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEE-CCCCCCCccceEE
Confidence               458889987653  11111 11111122222 56677777654     468999998775432 2111111111112


Q ss_pred             EecCCCceEEeecC-----CCeEEEEECcCccce
Q 023772          235 CLTNSDAHVTGGSE-----DGYIYFWDLVDASVV  263 (277)
Q Consensus       235 ~~~~~~~~l~sgs~-----d~~i~iwd~~~~~~~  263 (277)
                      +. -++++++.|+.     -..+.+||..+.+..
T Consensus       259 ~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  291 (308)
T 1zgk_A          259 TV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTWS  291 (308)
T ss_dssp             EE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred             EE-ECCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence            22 24556555543     246889999886553

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.84  E-value=0.0003  Score=63.15  Aligned_cols=226  Identities=8%  Similarity=-0.028  Sum_probs=121.2

Q ss_pred             CCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEE-eCCCcEEEEECCC----CceeEEeecccCceeEEEEec
Q 023772           38 KDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISC-GGDRQIFYWDVST----GRVIRKFRGHESEVNAVKFNE  112 (277)
Q Consensus        38 ~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~-s~d~~v~~wd~~~----~~~~~~~~~h~~~v~~i~~~~  112 (277)
                      ..+.|+..++.+......+.. ...+..++|.+.++.|+.+ ...+.|+.+++..    ......+.........+++.+
T Consensus       384 ~~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~  462 (699)
T 1n7d_A          384 NRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW  462 (699)
T ss_dssp             CTTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred             CccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence            346788888776554333332 3456789999877776655 4567899999875    222222211122345677775


Q ss_pred             C-CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEee-c-CCcEEEEEccCCcc--cccCCCC
Q 023772          113 Y-SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGS-V-DGTVRTFDIRVGRE--LSDDLGQ  185 (277)
Q Consensus       113 ~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~-~-d~~i~i~d~~~~~~--~~~~~~~  185 (277)
                      . ++++++-...+.|.+.++.....  ..++.........+.+++  ..|+... . .+.|..+++.....  +......
T Consensus       463 ~~g~LY~tD~~~~~I~v~d~dg~~~--~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~  540 (699)
T 1n7d_A          463 IHSNIYWTDSVLGTVSVADTKGVKR--KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ  540 (699)
T ss_dssp             SSSBCEECCTTTSCEEEEBSSSCCE--EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCS
T ss_pred             eCCcEEEEeccCCeEEEEecCCCce--EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCC
Confidence            4 45555555678899988764321  111111111122333433  2333322 2 25677766643211  1111123


Q ss_pred             CeeEEEEeCCC-CEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCcccee
Q 023772          186 PVNCISMSNDG-NCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVA  264 (277)
Q Consensus       186 ~v~~~~~s~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~  264 (277)
                      ..+.|+|+|++ .++++-+..+.|..+|+........+...........+++.. +.++.+....+.|..+|..+++.+.
T Consensus       541 ~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~-~~lywtd~~~~~V~~~d~~~G~~~~  619 (699)
T 1n7d_A          541 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVN  619 (699)
T ss_dssp             SCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEET-TEEEEECSTTTCEEEEETTTEEEEE
T ss_pred             CccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEEC-CEEEEEeCCCCeEEEEEccCCCceE
Confidence            46789999875 455555667789999986433222222111111122223333 3445556677889999998888777


Q ss_pred             eec
Q 023772          265 KFK  267 (277)
Q Consensus       265 ~~~  267 (277)
                      .+.
T Consensus       620 ~i~  622 (699)
T 1n7d_A          620 LLA  622 (699)
T ss_dssp             CCC
T ss_pred             Eee
Confidence            765

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.80  E-value=0.02  Score=52.10  Aligned_cols=226  Identities=8%  Similarity=-0.030  Sum_probs=127.9

Q ss_pred             CCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEE-EEeCCCcEEEEECCCC----ceeEEeecccCceeEEEEec
Q 023772           38 KDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLI-SCGGDRQIFYWDVSTG----RVIRKFRGHESEVNAVKFNE  112 (277)
Q Consensus        38 ~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-t~s~d~~v~~wd~~~~----~~~~~~~~h~~~v~~i~~~~  112 (277)
                      ....|+..++.......... ....+..++|.+...+|+ +-...+.|+.+++...    .....+........+|++.+
T Consensus       402 n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~  480 (791)
T 3m0c_C          402 NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW  480 (791)
T ss_dssp             CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred             cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeee
Confidence            34678888877655443333 446778999998665554 5556688999988753    22222332344567899987


Q ss_pred             CCC-EEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEee-c-CCcEEEEEccCCcc--cccCCCC
Q 023772          113 YSS-VVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGS-V-DGTVRTFDIRVGRE--LSDDLGQ  185 (277)
Q Consensus       113 ~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~-~-d~~i~i~d~~~~~~--~~~~~~~  185 (277)
                      .+. +.++-...+.|.+.++.....  ..+..........+.+++  ..|+... . .+.|...++.....  +....-.
T Consensus       481 ~~~~LY~tD~~~~~I~v~~ldG~~~--~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~  558 (791)
T 3m0c_C          481 IHSNIYWTDSVLGTVSVADTKGVKR--KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ  558 (791)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSSSE--EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCS
T ss_pred             cCCcEEEEecCCCeEEEEeCCCCeE--EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCC
Confidence            764 555556678899998864321  222222223345555554  3343332 2 26677777754322  1111224


Q ss_pred             CeeEEEEeCCCCEEEEE-ecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCcccee
Q 023772          186 PVNCISMSNDGNCILAS-CLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVA  264 (277)
Q Consensus       186 ~v~~~~~s~~~~~l~~~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~  264 (277)
                      ..+.|++++.+..|..+ ...+.|..+++....................+++. .+.+..+-...+.|...|..+|+.+.
T Consensus       559 ~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~-~~~lYwtD~~~~~I~~~dk~tG~~~~  637 (791)
T 3m0c_C          559 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVN  637 (791)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCE
T ss_pred             CceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe-CCEEEEEECCCCEEEEEeCCCCcceE
Confidence            67899999766655544 45678999998644433333321111122223332 23444555677888888887776666


Q ss_pred             eec
Q 023772          265 KFK  267 (277)
Q Consensus       265 ~~~  267 (277)
                      .+.
T Consensus       638 ~l~  640 (791)
T 3m0c_C          638 LLA  640 (791)
T ss_dssp             EEE
T ss_pred             Eee
Confidence            554

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.78  E-value=0.021  Score=51.86  Aligned_cols=203  Identities=11%  Similarity=0.014  Sum_probs=115.8

Q ss_pred             cCCcEEEEEEeCCCC-EEEEEeCCCcEEEEcCCCC----eeEEEEeccCccEEEEEEcCCCCEEE-EEeCCCcEEEEECC
Q 023772           17 HEGAVLAARFNGDGN-YCLSCGKDRTIRLWNPHRG----IHIKTYKSHGREVRDVHVTADNSKLI-SCGGDRQIFYWDVS   90 (277)
Q Consensus        17 H~~~V~~~~~~~~~~-~l~s~s~d~~v~iwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~-t~s~d~~v~~wd~~   90 (277)
                      ....+..++|++... +.++-...+.|+.+++...    .....+.........+++.+.++.|+ +-...+.|.+.+++
T Consensus       422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld  501 (791)
T 3m0c_C          422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  501 (791)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence            345567899998544 4445566678888887642    22333433445678899998776554 55667899999987


Q ss_pred             CCceeEEeecccCceeEEEEecCCCEEEEEe-CC-CcEEEEeCccCCCcceEeeccccCcEEEEEec--CCeEE-EeecC
Q 023772           91 TGRVIRKFRGHESEVNAVKFNEYSSVVVSAG-YD-QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT--KTEII-GGSVD  165 (277)
Q Consensus        91 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~g~~d  165 (277)
                      .......+...-....+|++.|....|+-+. .+ +.|...++....  ...+..........+.++  ...|+ +-...
T Consensus       502 G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~--~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~  579 (791)
T 3m0c_C          502 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--IYSLVTENIQWPNGITLDLLSGRLYWVDSKL  579 (791)
T ss_dssp             SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC--EEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc--eEEEEeCCCCCceEEEEecCCCeEEEEeCCC
Confidence            5544333333445678999998755555444 33 678887775432  222222222234445544  34444 43445


Q ss_pred             CcEEEEEccCCcc--cccC--CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEE
Q 023772          166 GTVRTFDIRVGRE--LSDD--LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEY  222 (277)
Q Consensus       166 ~~i~i~d~~~~~~--~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~  222 (277)
                      +.|..+++.....  +...  .-.....|++.. +..+++-...+.|...|..+++.+..+
T Consensus       580 ~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          580 HSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLL  639 (791)
T ss_dssp             TEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             CcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcceEEe
Confidence            6788888754322  1111  112345666643 344555566778888887777554444

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.72  E-value=0.017  Score=49.30  Aligned_cols=242  Identities=8%  Similarity=0.050  Sum_probs=131.3

Q ss_pred             cEEEEEEeCC-CCEEE-EEeCCCcEEEEcCCCCeeEEEEecc---CccEEEEEE-------cCCCCEEEEEeCCC-----
Q 023772           20 AVLAARFNGD-GNYCL-SCGKDRTIRLWNPHRGIHIKTYKSH---GREVRDVHV-------TADNSKLISCGGDR-----   82 (277)
Q Consensus        20 ~V~~~~~~~~-~~~l~-s~s~d~~v~iwd~~~~~~~~~~~~h---~~~v~~~~~-------~~~~~~l~t~s~d~-----   82 (277)
                      ....++|+|. ...|+ +-...+.|++.|..++.........   ......++|       ++++++|+.+...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            3568999983 44444 4444477888998887655444322   225899999       99998666665443     


Q ss_pred             --cEEEEECCC-Ccee-----EEeecccCceeEEEEecC-CCEEEEEeCCCcEEEEeCc-------cCCC------cc--
Q 023772           83 --QIFYWDVST-GRVI-----RKFRGHESEVNAVKFNEY-SSVVVSAGYDQSLRAWDCR-------SHST------EP--  138 (277)
Q Consensus        83 --~v~~wd~~~-~~~~-----~~~~~h~~~v~~i~~~~~-~~~l~s~~~d~~i~iwd~~-------~~~~------~~--  138 (277)
                        .|.+.+... +...     ..+.... ....++++|+ +.++++-..++.|..+|+.       ....      ..  
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             CceEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence              266776443 2221     1222112 3356788884 5666677788889999986       3322      00  


Q ss_pred             -e-Eeecc-ccCcEEEEEec--CCe-EEEeecCCcEEEEEcc--CCc-----ccccC---CC-----------CCee-EE
Q 023772          139 -I-QIIDS-FQDSVMSVCLT--KTE-IIGGSVDGTVRTFDIR--VGR-----ELSDD---LG-----------QPVN-CI  190 (277)
Q Consensus       139 -~-~~~~~-~~~~~~~~~~~--~~~-~~~g~~d~~i~i~d~~--~~~-----~~~~~---~~-----------~~v~-~~  190 (277)
                       . ..+.. .......++++  ++. +++-.....|+.++..  .+.     .+...   .+           .... .+
T Consensus       299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv  378 (496)
T 3kya_A          299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV  378 (496)
T ss_dssp             TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred             ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence             0 11111 11122344444  443 4444566778886543  221     01000   00           1234 55


Q ss_pred             EEe-------CCCCEEEEEecCCeEEEEECCCCceEEEEecccc----------------------ceeeeeeEecCC-C
Q 023772          191 SMS-------NDGNCILASCLDSTLRLLDRSTGELLQEYKGHIC----------------------KSFKTDCCLTNS-D  240 (277)
Q Consensus       191 ~~s-------~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~-~  240 (277)
                      +..       ++|.++++=.....||.++. ++. +.++.+...                      .......++.++ +
T Consensus       379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g  456 (496)
T 3kya_A          379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKE  456 (496)
T ss_dssp             EEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTT
T ss_pred             EEccccccccCCCeEEEEECCCCEEEEEeC-CCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCC
Confidence            665       56777777777889999994 563 455544210                      112233455554 5


Q ss_pred             ceEEeecCCCeEEEEECcCcccee
Q 023772          241 AHVTGGSEDGYIYFWDLVDASVVA  264 (277)
Q Consensus       241 ~~l~sgs~d~~i~iwd~~~~~~~~  264 (277)
                      .+.++=+....||.++++....++
T Consensus       457 ~lyVaD~~N~rIrki~~~~~~~~~  480 (496)
T 3kya_A          457 MFYVHDQVGHTIRTISMEQEENVA  480 (496)
T ss_dssp             EEEEEETTTTEEEEEEECCCC---
T ss_pred             EEEEEeCCCCEEEEEECCCCcccc
Confidence            555555566677777776554443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.70  E-value=0.014  Score=49.19  Aligned_cols=115  Identities=12%  Similarity=0.126  Sum_probs=68.9

Q ss_pred             cCCcEEEEEEeCCCCEEEEEeCC---Cc-EEEEcCCCCee-EEEEeccCccEEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 023772           17 HEGAVLAARFNGDGNYCLSCGKD---RT-IRLWNPHRGIH-IKTYKSHGREVRDVHVTA-DNSKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        17 H~~~V~~~~~~~~~~~l~s~s~d---~~-v~iwd~~~~~~-~~~~~~h~~~v~~~~~~~-~~~~l~t~s~d~~v~~wd~~   90 (277)
                      .......++|+++|+++++....   .. +...+...+.. ...+. .......+++.+ ++..+++-..++.|..+|..
T Consensus       180 ~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~  258 (433)
T 4hw6_A          180 NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPA  258 (433)
T ss_dssp             CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTT
T ss_pred             CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECC
Confidence            34457899999999955554321   12 22233221111 11222 234567789999 56655666677899999998


Q ss_pred             CCceeEEeec-c-cCceeEEEEecCCC-EEEEEeCCCcEEEEeCc
Q 023772           91 TGRVIRKFRG-H-ESEVNAVKFNEYSS-VVVSAGYDQSLRAWDCR  132 (277)
Q Consensus        91 ~~~~~~~~~~-h-~~~v~~i~~~~~~~-~l~s~~~d~~i~iwd~~  132 (277)
                      ++.....+.. . ...-..++++|+++ +.++-...+.|..++..
T Consensus       259 ~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          259 TGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             TCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred             CCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence            7766333321 1 12224699999998 55555667889997764

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.66  E-value=0.014  Score=46.62  Aligned_cols=226  Identities=10%  Similarity=0.059  Sum_probs=108.9

Q ss_pred             EEEEeCCCcEEEEcCCCCeeEEE-EeccCccEEEEEEcCCCCEEEEEeC-----C------CcEEEEECCCCce--eEEe
Q 023772           33 CLSCGKDRTIRLWNPHRGIHIKT-YKSHGREVRDVHVTADNSKLISCGG-----D------RQIFYWDVSTGRV--IRKF   98 (277)
Q Consensus        33 l~s~s~d~~v~iwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~t~s~-----d------~~v~~wd~~~~~~--~~~~   98 (277)
                      ++.|+  ..+.+||+.+++-... ...............++..++.|+.     .      ..+..||..+++-  +..+
T Consensus         8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~   85 (315)
T 4asc_A            8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL   85 (315)
T ss_dssp             EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCB
T ss_pred             EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCC
Confidence            34455  5788999988875431 1111122233334457777777773     1      1277888876542  1111


Q ss_pred             ecccCceeEEEEecCCCEEEEEeCC--------CcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeec-C----
Q 023772           99 RGHESEVNAVKFNEYSSVVVSAGYD--------QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSV-D----  165 (277)
Q Consensus        99 ~~h~~~v~~i~~~~~~~~l~s~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-d----  165 (277)
                      ...... .++.. -++++++.|+.+        ..+.+||+.+..-.....+.........+......++.|+. +    
T Consensus        86 p~~r~~-~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~  163 (315)
T 4asc_A           86 PSPRCL-FGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKC  163 (315)
T ss_dssp             SSCEES-CEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCB
T ss_pred             Ccchhc-eeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcc
Confidence            111111 11222 245666777643        45888887653211111111111112233344445566665 2    


Q ss_pred             -CcEEEEEccCCc--ccccCC-CCCeeEEEEeCCCCEEEEEecCC-----eEEEEECCCCceEEEEeccccceeeeeeEe
Q 023772          166 -GTVRTFDIRVGR--ELSDDL-GQPVNCISMSNDGNCILASCLDS-----TLRLLDRSTGELLQEYKGHICKSFKTDCCL  236 (277)
Q Consensus       166 -~~i~i~d~~~~~--~~~~~~-~~~v~~~~~s~~~~~l~~~~~d~-----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  236 (277)
                       ..+.+||+.+.+  .+.... ...-.+++. -+++.++.|+.++     .+.+||..+++-.. +...........++.
T Consensus       164 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~  241 (315)
T 4asc_A          164 LNKMCVYDPKKFEWKELAPMQTARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAP-FEAFPQERSSLSLVS  241 (315)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTEEEE-ECCCSSCCBSCEEEE
T ss_pred             cceEEEEeCCCCeEEECCCCCCchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCCeEEE-CCCCCCcccceeEEE
Confidence             468889987653  111111 111112222 2567777777654     47889998775433 221111111111222


Q ss_pred             cCCCceEEeecCC--------------CeEEEEECcCccceee
Q 023772          237 TNSDAHVTGGSED--------------GYIYFWDLVDASVVAK  265 (277)
Q Consensus       237 ~~~~~~l~sgs~d--------------~~i~iwd~~~~~~~~~  265 (277)
                       -++++++.|+.+              ..+.+||+.+.+-...
T Consensus       242 -~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  283 (315)
T 4asc_A          242 -LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV  283 (315)
T ss_dssp             -ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred             -ECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence             245555555442              2478899988765443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.57  E-value=0.0089  Score=47.44  Aligned_cols=186  Identities=12%  Similarity=0.146  Sum_probs=92.2

Q ss_pred             CCCEEEEEeCC-----CcEEEEcCCCCe---eEEEEeccCcc-EEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCc-
Q 023772           29 DGNYCLSCGKD-----RTIRLWNPHRGI---HIKTYKSHGRE-VRDVHVTADNSKLISCGGD-----RQIFYWDVSTGR-   93 (277)
Q Consensus        29 ~~~~l~s~s~d-----~~v~iwd~~~~~---~~~~~~~h~~~-v~~~~~~~~~~~l~t~s~d-----~~v~~wd~~~~~-   93 (277)
                      ++.+++.||.+     ..+.+||+.+.+   ....-...... -.++.. .+++.++.|+.+     ..+.+||+.+.+ 
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W  140 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT-LGDMIYVSGGFDGSRRHTSMERYDPNIDQW  140 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE-ECCEEEEEcccCCCcccceEEEEcCCCCeE
Confidence            45666777755     468889987765   33321111111 112222 256666666644     358889987654 


Q ss_pred             -eeEEeecccCceeEEEEecCCCEEEEEeCC-----CcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecC--
Q 023772           94 -VIRKFRGHESEVNAVKFNEYSSVVVSAGYD-----QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVD--  165 (277)
Q Consensus        94 -~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d--  165 (277)
                       .+..+...... .++.. .++++++.|+.+     ..+..||+.+..-..+..+.........+......++.|+.+  
T Consensus       141 ~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~  218 (301)
T 2vpj_A          141 SMLGDMQTAREG-AGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGT  218 (301)
T ss_dssp             EEEEECSSCCBS-CEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSS
T ss_pred             EECCCCCCCccc-ceEEE-ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCC
Confidence             22222211111 11222 256677777654     458888876532111111111111122333344445666654  


Q ss_pred             ---CcEEEEEccCCc--ccccCC-CCCeeEEEEeCCCCEEEEEecC-----CeEEEEECCCCce
Q 023772          166 ---GTVRTFDIRVGR--ELSDDL-GQPVNCISMSNDGNCILASCLD-----STLRLLDRSTGEL  218 (277)
Q Consensus       166 ---~~i~i~d~~~~~--~~~~~~-~~~v~~~~~s~~~~~l~~~~~d-----~~i~~wd~~~~~~  218 (277)
                         ..+.+||+.+.+  .+.... ...-.+++. -+++.++.|+.+     ..+.+||..+.+.
T Consensus       219 ~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  281 (301)
T 2vpj_A          219 AHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV-LRGRLYAIAGYDGNSLLSSIECYDPIIDSW  281 (301)
T ss_dssp             SBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred             cccceEEEEeCCCCcEEECCCCCCcccceeEEE-ECCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence               468889987653  121111 111112222 256677777655     3577888877654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.55  E-value=0.0081  Score=47.75  Aligned_cols=186  Identities=13%  Similarity=0.141  Sum_probs=90.6

Q ss_pred             CCCEEEEEeCC-----CcEEEEcCCCCeeEEEEeccCcc-EEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCce--e
Q 023772           29 DGNYCLSCGKD-----RTIRLWNPHRGIHIKTYKSHGRE-VRDVHVTADNSKLISCGGDR-----QIFYWDVSTGRV--I   95 (277)
Q Consensus        29 ~~~~l~s~s~d-----~~v~iwd~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~t~s~d~-----~v~~wd~~~~~~--~   95 (277)
                      ++.+++.||.+     ..+.+||+.+.+....-...... -.++.. .++..++.|+.++     .+.+||+.+.+-  +
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~  139 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV  139 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeec
Confidence            55666677655     35788888876543322111111 112222 2566667776553     577888876542  2


Q ss_pred             EEeecccCceeEEEEecCCCEEEEEeCC-------CcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecC---
Q 023772           96 RKFRGHESEVNAVKFNEYSSVVVSAGYD-------QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVD---  165 (277)
Q Consensus        96 ~~~~~h~~~v~~i~~~~~~~~l~s~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d---  165 (277)
                      ..+...... .++.. -++++++.|+.+       ..+..||+.+..-..+..+.........+......++.|+.+   
T Consensus       140 ~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~  217 (302)
T 2xn4_A          140 APMNTRRSS-VGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPL  217 (302)
T ss_dssp             CCCSSCCBS-CEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSS
T ss_pred             CCCCCcccC-ceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCCc
Confidence            112111111 12222 245666766643       347888876532111111111111122333444456666654   


Q ss_pred             --CcEEEEEccCCc--ccccCCCCC-eeEEEEeCCCCEEEEEecCC-----eEEEEECCCCce
Q 023772          166 --GTVRTFDIRVGR--ELSDDLGQP-VNCISMSNDGNCILASCLDS-----TLRLLDRSTGEL  218 (277)
Q Consensus       166 --~~i~i~d~~~~~--~~~~~~~~~-v~~~~~s~~~~~l~~~~~d~-----~i~~wd~~~~~~  218 (277)
                        ..+.+||+.+.+  .+....... -.+++. .++..++.|+.++     .+.+||..+++-
T Consensus       218 ~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  279 (302)
T 2xn4_A          218 VRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA-VNGLLYVVGGDDGSCNLASVEYYNPTTDKW  279 (302)
T ss_dssp             BCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             ccceEEEEeCCCCCEeeCCCCCCccccCeEEE-ECCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence              368889987653  111111111 112222 2566777777553     478888877653

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.54  E-value=0.015  Score=46.83  Aligned_cols=160  Identities=8%  Similarity=0.023  Sum_probs=97.0

Q ss_pred             EeccCccEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEeecc-----c--CceeEEEE---ecCCCEEEEEe---
Q 023772           56 YKSHGREVRDVHVTADNSKLISCG-GDRQIFYWDVSTGRVIRKFRGH-----E--SEVNAVKF---NEYSSVVVSAG---  121 (277)
Q Consensus        56 ~~~h~~~v~~~~~~~~~~~l~t~s-~d~~v~~wd~~~~~~~~~~~~h-----~--~~v~~i~~---~~~~~~l~s~~---  121 (277)
                      +........+..|.+...++..++ ..++|..||...+.........     .  ..+..+.+   .+++++++...   
T Consensus         8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~   87 (334)
T 2p9w_A            8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK   87 (334)
T ss_dssp             ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred             ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence            334444567889988777776666 7899999999766433322222     1  13578999   57877776543   


Q ss_pred             ----------CCCcEEEEeCc---cCCCcceEeeccc-----------cCcEEEEEecC--CeEEEeecC-CcEEEEEcc
Q 023772          122 ----------YDQSLRAWDCR---SHSTEPIQIIDSF-----------QDSVMSVCLTK--TEIIGGSVD-GTVRTFDIR  174 (277)
Q Consensus       122 ----------~d~~i~iwd~~---~~~~~~~~~~~~~-----------~~~~~~~~~~~--~~~~~g~~d-~~i~i~d~~  174 (277)
                                .+..+..||+.   +........+...           ...+..+..++  +-.++++.. +.|...+..
T Consensus        88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd  167 (334)
T 2p9w_A           88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD  167 (334)
T ss_dssp             TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred             cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence                      26779999987   4433322222111           12345555554  445666666 555555443


Q ss_pred             CCcc--ccc-----CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCC
Q 023772          175 VGRE--LSD-----DLGQPVNCISMSNDGNCILASCLDSTLRLLDRST  215 (277)
Q Consensus       175 ~~~~--~~~-----~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~  215 (277)
                      ....  +..     ....-.+.|+++|+|..|++....+.|..+|+.+
T Consensus       168 G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          168 GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            2211  100     1112367899999999888887799999999874

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.52  E-value=0.01  Score=47.28  Aligned_cols=185  Identities=11%  Similarity=0.102  Sum_probs=92.2

Q ss_pred             CCCEEEEEeCC----CcEEEEcCCCCeeEEEEeccCccE-EEEEEcCCCCEEEEEeCC------CcEEEEECCCCce--e
Q 023772           29 DGNYCLSCGKD----RTIRLWNPHRGIHIKTYKSHGREV-RDVHVTADNSKLISCGGD------RQIFYWDVSTGRV--I   95 (277)
Q Consensus        29 ~~~~l~s~s~d----~~v~iwd~~~~~~~~~~~~h~~~v-~~~~~~~~~~~l~t~s~d------~~v~~wd~~~~~~--~   95 (277)
                      ++.+++.||.+    ..+.+||+.+++....-....... .++.. .+++.++.|+.+      ..+.+||..+.+-  +
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~  133 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACA-AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTK  133 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEE-ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEE-ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC
Confidence            55666777755    677888988876543322111111 12222 256666777655      4688999887642  2


Q ss_pred             EEeecccCceeEEEEecCCCEEEEEeC---------CCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecC-
Q 023772           96 RKFRGHESEVNAVKFNEYSSVVVSAGY---------DQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVD-  165 (277)
Q Consensus        96 ~~~~~h~~~v~~i~~~~~~~~l~s~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d-  165 (277)
                      ..+...... .++.. -++++++.|+.         -..+.+||+.+..-..+..+.........+......++.|+.+ 
T Consensus       134 ~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~  211 (306)
T 3ii7_A          134 PSMLTQRCS-HGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNG  211 (306)
T ss_dssp             CCCSSCCBS-CEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEET
T ss_pred             CCCcCCcce-eEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCC
Confidence            111111111 11222 25566666654         3447888876542111111111111122233344445566543 


Q ss_pred             ----CcEEEEEccCCc--ccccCC-C-CCeeEEEEeCCCCEEEEEecC-----CeEEEEECCCCce
Q 023772          166 ----GTVRTFDIRVGR--ELSDDL-G-QPVNCISMSNDGNCILASCLD-----STLRLLDRSTGEL  218 (277)
Q Consensus       166 ----~~i~i~d~~~~~--~~~~~~-~-~~v~~~~~s~~~~~l~~~~~d-----~~i~~wd~~~~~~  218 (277)
                          ..+.+||+.+.+  .+.... . ....++.+  ++..++.|+.+     ..+.+||..+.+-
T Consensus       212 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W  275 (306)
T 3ii7_A          212 LGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKW  275 (306)
T ss_dssp             TEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred             CCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence                357889987653  111111 1 11122222  56677777754     4678899887654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.51  E-value=0.02  Score=44.43  Aligned_cols=200  Identities=12%  Similarity=0.104  Sum_probs=119.4

Q ss_pred             EEeccCccEEEEEEcCCCCEEEE-EeCCCcEEEEECCCCceeEEeec-ccCceeEEEEecCCCEEEEEeCCCcEEEEeCc
Q 023772           55 TYKSHGREVRDVHVTADNSKLIS-CGGDRQIFYWDVSTGRVIRKFRG-HESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR  132 (277)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t-~s~d~~v~~wd~~~~~~~~~~~~-h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~  132 (277)
                      .+.+-...+..+++.|+++.|++ ...++.|...|+. ++.++.+.- -......+++.+++.++++.-.++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            34445567999999998776665 5567889999988 887777642 22467788998888877776677888888875


Q ss_pred             cCCC-cceEeec------cccCcEEEEEec--CCeEEEeecCCcEEEEEccC---Cc--ccc-------cCCCCCeeEEE
Q 023772          133 SHST-EPIQIID------SFQDSVMSVCLT--KTEIIGGSVDGTVRTFDIRV---GR--ELS-------DDLGQPVNCIS  191 (277)
Q Consensus       133 ~~~~-~~~~~~~------~~~~~~~~~~~~--~~~~~~g~~d~~i~i~d~~~---~~--~~~-------~~~~~~v~~~~  191 (277)
                      .... .......      ......-.++++  .+.++++.......+|.+..   ..  .+.       ...-.....++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            4332 0111111      011122344444  44566666555555555531   10  111       01123568899


Q ss_pred             EeCCC-CEEEEEecCCeEEEEECCCCceEEEEecccc-------ceeeeeeEecCCCceEEeecCCCeEEEEEC
Q 023772          192 MSNDG-NCILASCLDSTLRLLDRSTGELLQEYKGHIC-------KSFKTDCCLTNSDAHVTGGSEDGYIYFWDL  257 (277)
Q Consensus       192 ~s~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~  257 (277)
                      ++|.. .+++.+...+.+..+|.. ++.+..+.-...       ....--.++.++|++.++ ++-+.++.+.-
T Consensus       180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~  251 (255)
T 3qqz_A          180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP  251 (255)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred             EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence            99964 456666777889999976 566665543211       112334567777764444 66666655543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.45  E-value=0.00063  Score=61.09  Aligned_cols=201  Identities=11%  Similarity=0.001  Sum_probs=109.5

Q ss_pred             cEEEEEEeCCCCEEEEE-eCCCcEEEEcCCC----CeeEEEEeccCccEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCc
Q 023772           20 AVLAARFNGDGNYCLSC-GKDRTIRLWNPHR----GIHIKTYKSHGREVRDVHVTADNSK-LISCGGDRQIFYWDVSTGR   93 (277)
Q Consensus        20 ~V~~~~~~~~~~~l~s~-s~d~~v~iwd~~~----~~~~~~~~~h~~~v~~~~~~~~~~~-l~t~s~d~~v~~wd~~~~~   93 (277)
                      .+..++|++.+..|+-+ ...+.|+.+++..    ......+.........+++.+.+.. +++-...+.|.+.+++...
T Consensus       407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~  486 (699)
T 1n7d_A          407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK  486 (699)
T ss_dssp             TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC
T ss_pred             ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc
Confidence            34578888866655543 4567888888764    1211122112234567888755444 4554567889999987654


Q ss_pred             eeEEeecccCceeEEEEecCCCEEEEEe-CC-CcEEEEeCccCCCcceEeeccccCcEEEEEec--CCe-EEEeecCCcE
Q 023772           94 VIRKFRGHESEVNAVKFNEYSSVVVSAG-YD-QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT--KTE-IIGGSVDGTV  168 (277)
Q Consensus        94 ~~~~~~~h~~~v~~i~~~~~~~~l~s~~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~g~~d~~i  168 (277)
                      ....+.........+++.|.+..|+.+. .. +.|...++..... .. +..........+.++  ... +++-+..+.|
T Consensus       487 ~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~~-l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I  564 (699)
T 1n7d_A          487 RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YS-LVTENIQWPNGITLDLLSGRLYWVDSKLHSI  564 (699)
T ss_dssp             EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-CE-ESCSSCSSCCCEEECTTTCCEEEEETTTTEE
T ss_pred             eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-eE-EEeCCCCCccEEEEeccCCEEEEEecCCCeE
Confidence            3333322234457788988654444333 22 6787777653221 11 111111112234444  333 4444556788


Q ss_pred             EEEEccCCc--ccccC--CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEe
Q 023772          169 RTFDIRVGR--ELSDD--LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYK  223 (277)
Q Consensus       169 ~i~d~~~~~--~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~  223 (277)
                      ..+|+....  .+...  .......|++..+ ..+++....+.|..+|..+++.+..+.
T Consensus       565 ~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          565 SSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             EEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             EEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence            888885322  12111  1123345666554 455566677899999988887776654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.44  E-value=0.031  Score=44.96  Aligned_cols=202  Identities=10%  Similarity=-0.038  Sum_probs=118.6

Q ss_pred             CcEEEEEEeCCC-CEEEEEeCCCcEEEEcCCCCee-EEEEeccCccEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCcee
Q 023772           19 GAVLAARFNGDG-NYCLSCGKDRTIRLWNPHRGIH-IKTYKSHGREVRDVHVTADNSKL-ISCGGDRQIFYWDVSTGRVI   95 (277)
Q Consensus        19 ~~V~~~~~~~~~-~~l~s~s~d~~v~iwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l-~t~s~d~~v~~wd~~~~~~~   95 (277)
                      .....++|++.+ .+..+-...+.|..+++..+.. ...+...-.....+++.+.+..| ++-...+.|.+++++.....
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~  114 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK  114 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence            345688899854 4445656678888888766532 12222233456789998755544 55566789999998754332


Q ss_pred             EEeecccCceeEEEEecCCCEEEEEe--CCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeE-EEeecCCcEEE
Q 023772           96 RKFRGHESEVNAVKFNEYSSVVVSAG--YDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEI-IGGSVDGTVRT  170 (277)
Q Consensus        96 ~~~~~h~~~v~~i~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~g~~d~~i~i  170 (277)
                      ............+++.|.+..++-+.  ..+.|...++....  ........-.....+.+++  ..+ ++-+..+.|..
T Consensus       115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~--~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~  192 (318)
T 3sov_A          115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS--RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHK  192 (318)
T ss_dssp             EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS--CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC--eEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEE
Confidence            22223344568899998755555444  25778887765322  1122221122234555543  334 44455678888


Q ss_pred             EEccCCc--ccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEe
Q 023772          171 FDIRVGR--ELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYK  223 (277)
Q Consensus       171 ~d~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~  223 (277)
                      +|+....  .+..........+++.. +..+.+-...+.|..+|..+++..+.+.
T Consensus       193 ~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          193 SNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIH  246 (318)
T ss_dssp             EETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             EcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence            8886322  12221234566778763 4455666677889999987776555443

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.40  E-value=0.043  Score=45.78  Aligned_cols=231  Identities=10%  Similarity=0.144  Sum_probs=146.8

Q ss_pred             EEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeEEeecc
Q 023772           23 AARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVST-GRVIRKFRGH  101 (277)
Q Consensus        23 ~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~-~~~~~~~~~h  101 (277)
                      +.-.+|..+.|+--. ..++.|+|+++...++.+.-. .+|.--.|..+. .|+-. .+..|.-|+++. ..+.+-|..|
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~-e~VvfWkWis~~-~l~lV-T~taVyHWsi~~~s~P~kvFdR~  145 (494)
T 1bpo_A           70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALV-TDNAVYHWSMEGESQPVKMFDRH  145 (494)
T ss_dssp             EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEEEETT-EEEEE-CSSEEEEEESSSSCCCEEEEECC
T ss_pred             eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC-CCceEEEecCCC-eEEEE-cCCeeEEecccCCCCchhheecc
Confidence            355677777777544 689999999999888888754 467777776554 33333 256899999974 3566666555


Q ss_pred             ----cCceeEEEEecCCCEEEEEe-------CCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC----eEEE-ee--
Q 023772          102 ----ESEVNAVKFNEYSSVVVSAG-------YDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT----EIIG-GS--  163 (277)
Q Consensus       102 ----~~~v~~i~~~~~~~~l~s~~-------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-g~--  163 (277)
                          ...|..-..+++.+.++-.|       -.|.+.+|....   ...+.+++|......+.+.++    .+++ +.  
T Consensus       146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er---~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~  222 (494)
T 1bpo_A          146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR---KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRG  222 (494)
T ss_dssp             GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT---CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECS
T ss_pred             hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc---cccchheeeeeeeEEEecCCCCCCceEEEEEEec
Confidence                35666667778888765433       357788888653   345666776655555554432    1222 11  


Q ss_pred             -cCCcEEEEEccCC---c-ccc----------cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccc
Q 023772          164 -VDGTVRTFDIRVG---R-ELS----------DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICK  228 (277)
Q Consensus       164 -~d~~i~i~d~~~~---~-~~~----------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~  228 (277)
                       ..+++.+-++...   . .+.          ....+-.-++.+++.-..+..-..-|.|++||+.++.++..-+-....
T Consensus       223 ~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~  302 (494)
T 1bpo_A          223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGET  302 (494)
T ss_dssp             TTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             CCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCc
Confidence             1368888888543   1 110          011234567888888888888889999999999999998654433222


Q ss_pred             eeeeeeEec-CCCceEEeecCCCeEEEEECcCccce
Q 023772          229 SFKTDCCLT-NSDAHVTGGSEDGYIYFWDLVDASVV  263 (277)
Q Consensus       229 ~~~~~~~~~-~~~~~l~sgs~d~~i~iwd~~~~~~~  263 (277)
                      .+.  .+.. +.+..++. ...|.|.--.+++..++
T Consensus       303 iF~--t~~~~~~~Gi~~V-nr~GqVl~v~v~e~~iv  335 (494)
T 1bpo_A          303 IFV--TAPHEATAGIIGV-NRKGQVLSVCVEEENII  335 (494)
T ss_dssp             EEE--EEEETTTTEEEEE-ETTCEEEEEEECTTTHH
T ss_pred             eEE--ecccCCCCcEEEE-ccCceEEEEEEccccch
Confidence            222  2333 33444444 48888887777776654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.23  E-value=0.15  Score=48.45  Aligned_cols=253  Identities=16%  Similarity=0.117  Sum_probs=134.6

Q ss_pred             CCcEEEEEEeCC------CCEEEEEeC-CCcEEEEcCCCCeeEEEEecc-CccEEEEEEcC--CCCEEEEEeCCCcEEEE
Q 023772           18 EGAVLAARFNGD------GNYCLSCGK-DRTIRLWNPHRGIHIKTYKSH-GREVRDVHVTA--DNSKLISCGGDRQIFYW   87 (277)
Q Consensus        18 ~~~V~~~~~~~~------~~~l~s~s~-d~~v~iwd~~~~~~~~~~~~h-~~~v~~~~~~~--~~~~l~t~s~d~~v~~w   87 (277)
                      .+.|.|+++.+.      +++++.|.. |++++|+++.+.+.+....-. .....++.+..  ...+|..|-.||.+.-+
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~  632 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF  632 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence            457999998763      468888886 999999999876555433221 12444554432  33578888899987655


Q ss_pred             EC--CCCceeE---EeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcE-EEEEec----CC
Q 023772           88 DV--STGRVIR---KFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSV-MSVCLT----KT  157 (277)
Q Consensus        88 d~--~~~~~~~---~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~----~~  157 (277)
                      .+  .+|++..   .+.+ ..++.-..+...+..-+-+..++...++.-+ +   ......-....+ ....++    ++
T Consensus       633 ~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~---~l~~s~l~~~~v~~~~~F~se~~~~  707 (1158)
T 3ei3_A          633 GLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-H---KLVFSNVNLKEVNYMCPLNSDGYPD  707 (1158)
T ss_dssp             EECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESS-S---SEEEEEBSSSCCCEEEEECCSSSTT
T ss_pred             EEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcC-C---ceEEeccChHHhceEeccCcccCCC
Confidence            44  4554432   1222 4466544444444332223334444444322 1   111111111111 222332    34


Q ss_pred             eEEEeecCCcEEEEEccCCcccc---cCCCCCeeEEEEeCCCCEEEEEecC-----------------------------
Q 023772          158 EIIGGSVDGTVRTFDIRVGRELS---DDLGQPVNCISMSNDGNCILASCLD-----------------------------  205 (277)
Q Consensus       158 ~~~~g~~d~~i~i~d~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~d-----------------------------  205 (277)
                      .++. ..++.++|..+...+.+.   ...+..++.++++|+.+.++.+..+                             
T Consensus       708 g~v~-~~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  786 (1158)
T 3ei3_A          708 SLAL-ANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSS  786 (1158)
T ss_dssp             EEEE-ECSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCC
T ss_pred             cEEE-EcCCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhccccc
Confidence            4554 345668888775433221   1345677888888877655443211                             


Q ss_pred             --------------------CeEEEEECCCCceEEEEeccccceeeee--eEecC-CCceEEeec----------CCCeE
Q 023772          206 --------------------STLRLLDRSTGELLQEYKGHICKSFKTD--CCLTN-SDAHVTGGS----------EDGYI  252 (277)
Q Consensus       206 --------------------~~i~~wd~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~l~sgs----------~d~~i  252 (277)
                                          ..|++.|..+.+.+..+.-..+......  +.+.. ...+++.|.          ..|.|
T Consensus       787 ~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri  866 (1158)
T 3ei3_A          787 KLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRI  866 (1158)
T ss_dssp             CCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEE
T ss_pred             ccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEE
Confidence                                2477888877777766654332221111  12222 246777664          45889


Q ss_pred             EEEECcCccceeeec-cCcceeEee
Q 023772          253 YFWDLVDASVVAKFK-AHSLVVKLL  276 (277)
Q Consensus       253 ~iwd~~~~~~~~~~~-~h~~~v~~~  276 (277)
                      ++|++.++++....+ ...++|..|
T Consensus       867 ~vf~v~~~kL~lv~~~~v~g~v~al  891 (1158)
T 3ei3_A          867 VVFQYSDGKLQTVAEKEVKGAVYSM  891 (1158)
T ss_dssp             EEEEEETTEEEEEEEEEESSCEEEE
T ss_pred             EEEEEECCEEEEEEEEEcCCcCEEE
Confidence            999997654433332 123455544

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.10  E-value=0.077  Score=42.66  Aligned_cols=192  Identities=7%  Similarity=0.066  Sum_probs=111.4

Q ss_pred             EEEEEEeCCCCEEE-EEeCCCcEEEEcCCCCeeEEE-Eec----cC--ccEEEEEE---cCCCCEEEEEe----------
Q 023772           21 VLAARFNGDGNYCL-SCGKDRTIRLWNPHRGIHIKT-YKS----HG--REVRDVHV---TADNSKLISCG----------   79 (277)
Q Consensus        21 V~~~~~~~~~~~l~-s~s~d~~v~iwd~~~~~~~~~-~~~----h~--~~v~~~~~---~~~~~~l~t~s----------   79 (277)
                      -.+.+|++....+. +.-..++|..||...+..... +..    ..  ..+..+.|   .+++.+++...          
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~   94 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ   94 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence            35788987554544 544789999999876543333 221    11  13578999   68866666433          


Q ss_pred             ---CCCcEEEEECC---CCceeEEee--ccc-----------CceeEEEEecCCCEEEEEeCC-CcEEEEeCccCCCcce
Q 023772           80 ---GDRQIFYWDVS---TGRVIRKFR--GHE-----------SEVNAVKFNEYSSVVVSAGYD-QSLRAWDCRSHSTEPI  139 (277)
Q Consensus        80 ---~d~~v~~wd~~---~~~~~~~~~--~h~-----------~~v~~i~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~  139 (277)
                         .+..+..+|+.   +++.+....  ...           ...+.++..++|+..++++.- +.|...+.........
T Consensus        95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~  174 (334)
T 2p9w_A           95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTF  174 (334)
T ss_dssp             CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEE
T ss_pred             ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeee
Confidence               26779999999   787765443  111           247899999999999999888 8877777543211111


Q ss_pred             Eeecccc------CcEEEEEecCCeEEEeecCCcEEEEEccCCcc--cccC------CCCCeeEE-EEeCCCCE-EEEEe
Q 023772          140 QIIDSFQ------DSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRE--LSDD------LGQPVNCI-SMSNDGNC-ILASC  203 (277)
Q Consensus       140 ~~~~~~~------~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~--~~~~------~~~~v~~~-~~s~~~~~-l~~~~  203 (277)
                      . .....      -.=+.+.+++..|++....+.|..+|+.....  +...      .......| ..-.+|+. +++..
T Consensus       175 ~-~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~  253 (334)
T 2p9w_A          175 A-WESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGAR  253 (334)
T ss_dssp             E-ECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEE
T ss_pred             e-ecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcC
Confidence            1 11100      01123444455666665599999999874333  2111      11122332 33346766 44444


Q ss_pred             cCCeEEEEEC
Q 023772          204 LDSTLRLLDR  213 (277)
Q Consensus       204 ~d~~i~~wd~  213 (277)
                      ..+.+.+.+.
T Consensus       254 ~~~~~~l~S~  263 (334)
T 2p9w_A          254 APYAISFRSW  263 (334)
T ss_dssp             TTEEEEEECS
T ss_pred             CCCEEEEECC
Confidence            5555555554

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.07  E-value=0.08  Score=42.29  Aligned_cols=220  Identities=11%  Similarity=0.058  Sum_probs=103.5

Q ss_pred             cEEEEcCCCCeeEEEE-eccCccEEEEEEcCCCCEEEEEeC----CC-------cEEEEECCCCce--eEEeecccCcee
Q 023772           41 TIRLWNPHRGIHIKTY-KSHGREVRDVHVTADNSKLISCGG----DR-------QIFYWDVSTGRV--IRKFRGHESEVN  106 (277)
Q Consensus        41 ~v~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~t~s~----d~-------~v~~wd~~~~~~--~~~~~~h~~~v~  106 (277)
                      .+..||+.+++....- ..............++..++.|+.    ++       .+..||..+++-  +..+...... .
T Consensus        25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~  103 (318)
T 2woz_A           25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL-F  103 (318)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS-C
T ss_pred             ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc-c
Confidence            4789999887754421 111112223334456777777773    12       167788776542  1111111111 1


Q ss_pred             EEEEecCCCEEEEEeCC-------CcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeec------CCcEEEEEc
Q 023772          107 AVKFNEYSSVVVSAGYD-------QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSV------DGTVRTFDI  173 (277)
Q Consensus       107 ~i~~~~~~~~l~s~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------d~~i~i~d~  173 (277)
                      ++... ++++++.|+.+       ..+.+||+.+..-.....+.........+......++.|+.      -..+.+||+
T Consensus       104 ~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~  182 (318)
T 2woz_A          104 GLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNP  182 (318)
T ss_dssp             EEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEET
T ss_pred             ceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcC
Confidence            22222 56677777764       34777887653211111011000111222234444555553      235888998


Q ss_pred             cCCc--ccccC-CCCCeeEEEEeCCCCEEEEEecC-----CeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEe
Q 023772          174 RVGR--ELSDD-LGQPVNCISMSNDGNCILASCLD-----STLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTG  245 (277)
Q Consensus       174 ~~~~--~~~~~-~~~~v~~~~~s~~~~~l~~~~~d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  245 (277)
                      .+.+  .+... ....-.+++.. +++.++.|+.+     ..+.+||..+++... +...........++ ..++.+++.
T Consensus       183 ~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~-~~~~~i~v~  259 (318)
T 2woz_A          183 KKGDWKDLAPMKTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKWEV-MTEFPQERSSISLV-SLAGSLYAI  259 (318)
T ss_dssp             TTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCEEE-CCCCSSCCBSCEEE-EETTEEEEE
T ss_pred             CCCEEEECCCCCCCcccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeEEE-CCCCCCcccceEEE-EECCEEEEE
Confidence            7653  11111 11111122222 56677777643     246789988765432 11111111111122 234555555


Q ss_pred             ecCC--------------CeEEEEECcCccceee
Q 023772          246 GSED--------------GYIYFWDLVDASVVAK  265 (277)
Q Consensus       246 gs~d--------------~~i~iwd~~~~~~~~~  265 (277)
                      |+.+              ..+.+||..+.+-...
T Consensus       260 GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  293 (318)
T 2woz_A          260 GGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM  293 (318)
T ss_dssp             CCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred             CCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence            5432              4588999988766544

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.06  E-value=0.085  Score=42.47  Aligned_cols=189  Identities=8%  Similarity=0.005  Sum_probs=100.1

Q ss_pred             CCcEEEEEEeCCCCEEEEEeCCCcE-EEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEEC--CCCce
Q 023772           18 EGAVLAARFNGDGNYCLSCGKDRTI-RLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDV--STGRV   94 (277)
Q Consensus        18 ~~~V~~~~~~~~~~~l~s~s~d~~v-~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~--~~~~~   94 (277)
                      .+.+..+.+.+++..++.+. ++.| |-.|--. .-..........+..+.+.+++..++.+...+..+-+|-  .+.+.
T Consensus       121 ~~~~~~i~~~~~~~~~~~~~-~g~v~~S~DgG~-tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~  198 (327)
T 2xbg_A          121 PGSPRLIKALGNGSAEMITN-VGAIYRTKDSGK-NWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEP  198 (327)
T ss_dssp             SSCEEEEEEEETTEEEEEET-TCCEEEESSTTS-SEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEE
T ss_pred             CCCeEEEEEECCCCEEEEeC-CccEEEEcCCCC-CCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeE
Confidence            34567788777776666554 4543 4445211 122233345567889999998877765543333334442  22233


Q ss_pred             eEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCC-CcceEee-ccccCcEEEEEecC-CeEEEeecCCcEEEE
Q 023772           95 IRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHS-TEPIQII-DSFQDSVMSVCLTK-TEIIGGSVDGTVRTF  171 (277)
Q Consensus        95 ~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~-~~~~~~~~~~~~~~-~~~~~g~~d~~i~i~  171 (277)
                      +.  ......+..+.+.+++.+++ ++.+|.+...+..... -.....- ......+..+.+.+ ..++.++.++.+. +
T Consensus       199 ~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i~-~  274 (327)
T 2xbg_A          199 HN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALL-C  274 (327)
T ss_dssp             EE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCEE-E
T ss_pred             CC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeEE-E
Confidence            31  23456778888888876654 4567877776311110 0000000 00112355555543 3455555677663 3


Q ss_pred             EccCCccccc-----CCCCCeeEEEEeCCCCEEEEEecCCeEEEEEC
Q 023772          172 DIRVGRELSD-----DLGQPVNCISMSNDGNCILASCLDSTLRLLDR  213 (277)
Q Consensus       172 d~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~  213 (277)
                      ....++....     .....+..+.|.+++. +++++.+|.|.-++-
T Consensus       275 S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          275 SQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT  320 (327)
T ss_dssp             ESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred             eCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence            2333332221     1234578888876554 667778887766654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.01  E-value=0.034  Score=44.29  Aligned_cols=186  Identities=13%  Similarity=0.158  Sum_probs=89.1

Q ss_pred             CCCEEEEEeC----C-----CcEEEEcCCCCeeEEEEeccCcc-EEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCc
Q 023772           29 DGNYCLSCGK----D-----RTIRLWNPHRGIHIKTYKSHGRE-VRDVHVTADNSKLISCGGD-----RQIFYWDVSTGR   93 (277)
Q Consensus        29 ~~~~l~s~s~----d-----~~v~iwd~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~t~s~d-----~~v~~wd~~~~~   93 (277)
                      ++.+++.||.    +     ..+.+||+.+.+....-...... -.++.. .+++.++.|+.+     ..+.+||..+.+
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  148 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGV-IDGHIYAVGGSHGCIHHNSVERYEPERDE  148 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEE-ETTEEEEECCEETTEECCCEEEEETTTTE
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEE-ECCEEEEEcCCCCCcccccEEEECCCCCe
Confidence            4566666665    2     46788888876543321111111 112222 255666666543     458888987654


Q ss_pred             e--eEEeecccCceeEEEEecCCCEEEEEeCC-----CcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecC-
Q 023772           94 V--IRKFRGHESEVNAVKFNEYSSVVVSAGYD-----QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVD-  165 (277)
Q Consensus        94 ~--~~~~~~h~~~v~~i~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d-  165 (277)
                      -  +..+......- ++... ++++++.|+.+     ..+..||+.+..-..+..+.........+......++.|+.+ 
T Consensus       149 W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~  226 (308)
T 1zgk_A          149 WHLVAPMLTRRIGV-GVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDG  226 (308)
T ss_dssp             EEECCCCSSCCBSC-EEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred             EeECCCCCccccce-EEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCCCC
Confidence            2  11111111111 12222 56677777654     458888876532111111111111122233344446666654 


Q ss_pred             ----CcEEEEEccCCc--ccccC-CCCCeeEEEEeCCCCEEEEEecC-----CeEEEEECCCCce
Q 023772          166 ----GTVRTFDIRVGR--ELSDD-LGQPVNCISMSNDGNCILASCLD-----STLRLLDRSTGEL  218 (277)
Q Consensus       166 ----~~i~i~d~~~~~--~~~~~-~~~~v~~~~~s~~~~~l~~~~~d-----~~i~~wd~~~~~~  218 (277)
                          ..+.+||+.+.+  .+... ....-.+++.. +++.++.|+.+     ..+.+||..+.+.
T Consensus       227 ~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  290 (308)
T 1zgk_A          227 QDQLNSVERYDVETETWTFVAPMKHRRSALGITVH-QGRIYVLGGYDGHTFLDSVECYDPDTDTW  290 (308)
T ss_dssp             SSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred             CCccceEEEEeCCCCcEEECCCCCCCccceEEEEE-CCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence                468889987653  11111 11111122222 56677777644     3567788876644

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.00  E-value=0.17  Score=44.77  Aligned_cols=198  Identities=10%  Similarity=-0.024  Sum_probs=109.0

Q ss_pred             CCcEEEEEEeCCCCEEE-EEeCCCcEEEEcCCCCee-EEEEeccCccEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCce
Q 023772           18 EGAVLAARFNGDGNYCL-SCGKDRTIRLWNPHRGIH-IKTYKSHGREVRDVHVTADNSKLI-SCGGDRQIFYWDVSTGRV   94 (277)
Q Consensus        18 ~~~V~~~~~~~~~~~l~-s~s~d~~v~iwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~-t~s~d~~v~~wd~~~~~~   94 (277)
                      -+....++|++.+..|+ +=...+.|..+++..... ...+.........+++.+.++.|+ +-...+.|.+.+++....
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~  118 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR  118 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence            34567899998665555 544567788888765422 233333335788999998666554 445678999999875443


Q ss_pred             eEEeecccCceeEEEEecCCCEEEEEeC--CCcEEEEeCccCCCcceEeeccccCcEEEEEec--CCeE-EEeecCCcEE
Q 023772           95 IRKFRGHESEVNAVKFNEYSSVVVSAGY--DQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT--KTEI-IGGSVDGTVR  169 (277)
Q Consensus        95 ~~~~~~h~~~v~~i~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~g~~d~~i~  169 (277)
                      ..-....-....+|++.|....|+-+..  .+.|...++....  ..............+.++  ...+ ++-...+.|.
T Consensus       119 ~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~--~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~  196 (619)
T 3s94_A          119 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS--RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIH  196 (619)
T ss_dssp             EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCS--CEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEE
T ss_pred             EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCc--eEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEE
Confidence            2222233445678999987555444443  3566666654322  122222122233445554  3343 3445556788


Q ss_pred             EEEccCCcc--cccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCce
Q 023772          170 TFDIRVGRE--LSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGEL  218 (277)
Q Consensus       170 i~d~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~  218 (277)
                      .+|+.....  +..........+++..+ ..+.+-...+.|...|..+++.
T Consensus       197 ~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~  246 (619)
T 3s94_A          197 KSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEG  246 (619)
T ss_dssp             EESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred             EecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcc
Confidence            888754321  11111123356677655 4455555677899999877653

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.96  E-value=0.1  Score=41.63  Aligned_cols=188  Identities=7%  Similarity=0.033  Sum_probs=89.3

Q ss_pred             CCCCEEEEEeC-----C------CcEEEEcCCCCeeEEEEeccCccE-EEEEEcCCCCEEEEEeCC--------CcEEEE
Q 023772           28 GDGNYCLSCGK-----D------RTIRLWNPHRGIHIKTYKSHGREV-RDVHVTADNSKLISCGGD--------RQIFYW   87 (277)
Q Consensus        28 ~~~~~l~s~s~-----d------~~v~iwd~~~~~~~~~~~~h~~~v-~~~~~~~~~~~l~t~s~d--------~~v~~w   87 (277)
                      .++.+++.||.     .      ..+.+||+.+++....-....... .++... ++..++.|+.+        ..+.+|
T Consensus        44 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~  122 (315)
T 4asc_A           44 KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCY  122 (315)
T ss_dssp             TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEE
T ss_pred             ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEE
Confidence            46777777773     1      126778888765432211111111 122222 55566666632        458889


Q ss_pred             ECCCCc--eeEEeecccCceeEEEEecCCCEEEEEeC-C-----CcEEEEeCccCCCcceEeeccccCcEEEEEecCCeE
Q 023772           88 DVSTGR--VIRKFRGHESEVNAVKFNEYSSVVVSAGY-D-----QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEI  159 (277)
Q Consensus        88 d~~~~~--~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (277)
                      |..+++  .+..+...... .++.. .++++++.|+. +     ..+.+||+.+..-..+..+.........+......+
T Consensus       123 d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iy  200 (315)
T 4asc_A          123 DRLSFKWGESDPLPYVVYG-HTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRII  200 (315)
T ss_dssp             ETTTTEEEECCCCSSCCBS-CEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEE
T ss_pred             CCCCCcEeECCCCCCcccc-eeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEE
Confidence            987753  22222111111 11222 34567777765 2     468888876532111111111111122333445556


Q ss_pred             EEeecCC-----cEEEEEccCCc--ccccCC-CCCeeEEEEeCCCCEEEEEecCC--------------eEEEEECCCCc
Q 023772          160 IGGSVDG-----TVRTFDIRVGR--ELSDDL-GQPVNCISMSNDGNCILASCLDS--------------TLRLLDRSTGE  217 (277)
Q Consensus       160 ~~g~~d~-----~i~i~d~~~~~--~~~~~~-~~~v~~~~~s~~~~~l~~~~~d~--------------~i~~wd~~~~~  217 (277)
                      +.|+.++     .+.+||+.+.+  .+.... ...-.+++. -+++.++.|+.++              .+.+||..+.+
T Consensus       201 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  279 (315)
T 4asc_A          201 VAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVS-LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK  279 (315)
T ss_dssp             EEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred             EEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEE-ECCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence            6666554     47788887653  111111 111112222 2566677776532              36678887765


Q ss_pred             eE
Q 023772          218 LL  219 (277)
Q Consensus       218 ~~  219 (277)
                      -.
T Consensus       280 W~  281 (315)
T 4asc_A          280 WE  281 (315)
T ss_dssp             EE
T ss_pred             hh
Confidence            43

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.95  E-value=0.0055  Score=49.67  Aligned_cols=189  Identities=12%  Similarity=0.071  Sum_probs=101.0

Q ss_pred             CEEEEEeCCCcEEEEECCCCceeEEeecc-cCceeEEEEe--c-CCCEEEEE-eCCCcEEEEeCccCCCcceEeeccc--
Q 023772           73 SKLISCGGDRQIFYWDVSTGRVIRKFRGH-ESEVNAVKFN--E-YSSVVVSA-GYDQSLRAWDCRSHSTEPIQIIDSF--  145 (277)
Q Consensus        73 ~~l~t~s~d~~v~~wd~~~~~~~~~~~~h-~~~v~~i~~~--~-~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~--  145 (277)
                      ..++.++.||.|.-+|.++|+...++... ..++....-.  + ++..++.. +.||.+..++..++...........  
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            46888999999999999999999888754 1232221110  1 22333333 5799998888765421111111100  


Q ss_pred             cCcEEE---EEe-------cCCeEEEeecCCcEEEEEccCCcccccCC-CCC--------eeEEEEe-----CCCCEEEE
Q 023772          146 QDSVMS---VCL-------TKTEIIGGSVDGTVRTFDIRVGRELSDDL-GQP--------VNCISMS-----NDGNCILA  201 (277)
Q Consensus       146 ~~~~~~---~~~-------~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~--------v~~~~~s-----~~~~~l~~  201 (277)
                      ..++..   ...       ....+++|+.++.+.-.|+++++.+.... +.+        ..|....     ..+..++.
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i  170 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI  170 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence            011110   001       34457899999999999999988654321 111        0111110     12356777


Q ss_pred             EecCCeEEEEECCCCceEEEE-----eccccce-eeeeeEecCCCceEEeecCCCeEEEEECcCcccee
Q 023772          202 SCLDSTLRLLDRSTGELLQEY-----KGHICKS-FKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVA  264 (277)
Q Consensus       202 ~~~d~~i~~wd~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~  264 (277)
                      +..+..+.+.+ ++|+ +..+     ....... .......+.++.+ +.++.||.|+..|..+|+.+-
T Consensus       171 g~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          171 GKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             ecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence            77777777776 4454 2211     1110000 0000001234555 446889999999999888764

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.94  E-value=0.092  Score=42.63  Aligned_cols=93  Identities=8%  Similarity=0.045  Sum_probs=44.5

Q ss_pred             CCCEEEEEeC-CCcEEEEcCCC--CeeEEEEecc-Cc-cEEEEEEcCCCCEEEEEeC-C---------CcEEEEECCCCc
Q 023772           29 DGNYCLSCGK-DRTIRLWNPHR--GIHIKTYKSH-GR-EVRDVHVTADNSKLISCGG-D---------RQIFYWDVSTGR   93 (277)
Q Consensus        29 ~~~~l~s~s~-d~~v~iwd~~~--~~~~~~~~~h-~~-~v~~~~~~~~~~~l~t~s~-d---------~~v~~wd~~~~~   93 (277)
                      ++.+.+.||. ...+.+||+.+  .+....-... .. .-.+++. -+++.++.|+. +         ..+.+||..+.+
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~   97 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS   97 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE-ETTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE-ECCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence            4556566654 35688888764  3322211111 11 1122222 25566666665 2         468889987754


Q ss_pred             --eeEEeecccCceeEEEEecCCCEEEEEeCC
Q 023772           94 --VIRKFRGHESEVNAVKFNEYSSVVVSAGYD  123 (277)
Q Consensus        94 --~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d  123 (277)
                        .+.........-.++.. .++++++.|+.+
T Consensus        98 W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~  128 (357)
T 2uvk_A           98 WVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVN  128 (357)
T ss_dssp             EEECSCCCSSCCSSEEEEE-ETTEEEEEECCC
T ss_pred             EEECCCCCCcccccceEEE-ECCEEEEEeCcC
Confidence              22222201111112222 566778888765

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.78  E-value=0.14  Score=40.77  Aligned_cols=190  Identities=8%  Similarity=0.086  Sum_probs=87.6

Q ss_pred             eCCCCEEEEEeC----CC-------cEEEEcCCCCeeEEEEeccCc-cEEEEEEcCCCCEEEEEeCC-------CcEEEE
Q 023772           27 NGDGNYCLSCGK----DR-------TIRLWNPHRGIHIKTYKSHGR-EVRDVHVTADNSKLISCGGD-------RQIFYW   87 (277)
Q Consensus        27 ~~~~~~l~s~s~----d~-------~v~iwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~t~s~d-------~~v~~w   87 (277)
                      ..++.+++.||.    ++       .+.+||+.+.+....-..... .-.++... +++.++.|+.+       ..+.+|
T Consensus        54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~y  132 (318)
T 2woz_A           54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCY  132 (318)
T ss_dssp             CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEE
T ss_pred             EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE-CCEEEEEcCccCCCCcccceEEEE
Confidence            346677777773    12       167788877654332111111 11222222 55666667653       357788


Q ss_pred             ECCCCce--eEEeecccCceeEEEEecCCCEEEEEeCC------CcEEEEeCccCCCcceEeeccccCcEEEEEecCCeE
Q 023772           88 DVSTGRV--IRKFRGHESEVNAVKFNEYSSVVVSAGYD------QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEI  159 (277)
Q Consensus        88 d~~~~~~--~~~~~~h~~~v~~i~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (277)
                      |..+.+=  +..+...... .++.. .++++++.|+.+      ..+.+||+.+..-..+............+......+
T Consensus       133 d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iy  210 (318)
T 2woz_A          133 DPVAAKWSEVKNLPIKVYG-HNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIV  210 (318)
T ss_dssp             ETTTTEEEEECCCSSCEES-CEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEE
T ss_pred             eCCCCCEeECCCCCCcccc-cEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEECCEEE
Confidence            8876532  1111111111 11222 356676776642      358888886542111111111111112233444445


Q ss_pred             EEeecC-----CcEEEEEccCCc--ccccCCCCC-eeEEEEeCCCCEEEEEecC--------------CeEEEEECCCCc
Q 023772          160 IGGSVD-----GTVRTFDIRVGR--ELSDDLGQP-VNCISMSNDGNCILASCLD--------------STLRLLDRSTGE  217 (277)
Q Consensus       160 ~~g~~d-----~~i~i~d~~~~~--~~~~~~~~~-v~~~~~s~~~~~l~~~~~d--------------~~i~~wd~~~~~  217 (277)
                      +.|+.+     ..+.+||+.+.+  .+....... -.+++. .++..++.|+.+              ..+.+||..+.+
T Consensus       211 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  289 (318)
T 2woz_A          211 IAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS-LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE  289 (318)
T ss_dssp             EEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE-ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred             EEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE-ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence            556543     246678887653  111111111 112222 256666776653              347778887765


Q ss_pred             eEE
Q 023772          218 LLQ  220 (277)
Q Consensus       218 ~~~  220 (277)
                      -..
T Consensus       290 W~~  292 (318)
T 2woz_A          290 WAG  292 (318)
T ss_dssp             EEE
T ss_pred             ehh
Confidence            443

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.78  E-value=0.21  Score=42.65  Aligned_cols=150  Identities=13%  Similarity=0.112  Sum_probs=85.5

Q ss_pred             EEEEEEcCC-CCEEEEE-eCCCcEEEEECCCCceeEEeecc---cCceeEEEE-------ecCCCEEEEEeCCC------
Q 023772           63 VRDVHVTAD-NSKLISC-GGDRQIFYWDVSTGRVIRKFRGH---ESEVNAVKF-------NEYSSVVVSAGYDQ------  124 (277)
Q Consensus        63 v~~~~~~~~-~~~l~t~-s~d~~v~~wd~~~~~~~~~~~~h---~~~v~~i~~-------~~~~~~l~s~~~d~------  124 (277)
                      ...++|+|. +..|+.+ ...+.|++.|++++.+.......   ......++|       +++++.++.+...+      
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~  220 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES  220 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence            568899983 5555544 44577999999887765433321   235788999       99998555555443      


Q ss_pred             -cEEEEeCcc-CCCcc-e--EeeccccCcEEEEEecC--Ce-EEEeecCCcEEEEEcc-------CCcc-----------
Q 023772          125 -SLRAWDCRS-HSTEP-I--QIIDSFQDSVMSVCLTK--TE-IIGGSVDGTVRTFDIR-------VGRE-----------  178 (277)
Q Consensus       125 -~i~iwd~~~-~~~~~-~--~~~~~~~~~~~~~~~~~--~~-~~~g~~d~~i~i~d~~-------~~~~-----------  178 (277)
                       .|.+++... ..... .  ..+.... ....+..++  .. +++-..++.|..+|+.       ++..           
T Consensus       221 ~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~  299 (496)
T 3kya_A          221 PSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT  299 (496)
T ss_dssp             EEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred             ceEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence             255665332 11110 0  1111111 122333333  33 4455567789999987       3332           


Q ss_pred             ---cc-cCCCCCeeEEEEeCCCCE-EEEEecCCeEEEEEC
Q 023772          179 ---LS-DDLGQPVNCISMSNDGNC-ILASCLDSTLRLLDR  213 (277)
Q Consensus       179 ---~~-~~~~~~v~~~~~s~~~~~-l~~~~~d~~i~~wd~  213 (277)
                         +. .........++|+|+|++ +++=.....|+.++.
T Consensus       300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence               11 111234578999999995 455556778988654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.71  E-value=0.19  Score=41.04  Aligned_cols=196  Identities=11%  Similarity=0.109  Sum_probs=108.1

Q ss_pred             eeccCCcEEEEEEeCCCCEEEEEe------------CCCcEEEEcCCC--CeeE-EEEec-----cCccEEEEEEcC--C
Q 023772           14 LKGHEGAVLAARFNGDGNYCLSCG------------KDRTIRLWNPHR--GIHI-KTYKS-----HGREVRDVHVTA--D   71 (277)
Q Consensus        14 l~~H~~~V~~~~~~~~~~~l~s~s------------~d~~v~iwd~~~--~~~~-~~~~~-----h~~~v~~~~~~~--~   71 (277)
                      +.+-......+...++|..+++++            .+|.|.++|+.+  ++.. ..+.+     .......+.+.+  +
T Consensus        45 i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~d  124 (355)
T 3sre_A           45 VKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDD  124 (355)
T ss_dssp             CTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTT
T ss_pred             eCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCC
Confidence            334233456777888886655652            789999999873  2221 12222     234577777765  3


Q ss_pred             CC-EEEEEe-C--CCcEEEEECCCC----ceeEEeecc-cCceeEEEEecCCCEEEEEeC-----------------CCc
Q 023772           72 NS-KLISCG-G--DRQIFYWDVSTG----RVIRKFRGH-ESEVNAVKFNEYSSVVVSAGY-----------------DQS  125 (277)
Q Consensus        72 ~~-~l~t~s-~--d~~v~~wd~~~~----~~~~~~~~h-~~~v~~i~~~~~~~~l~s~~~-----------------d~~  125 (277)
                      +. +|+.+. .  +.++-+|+++.+    ..+.++.+. -...+++.+.+++.+.++...                 .|.
T Consensus       125 g~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~  204 (355)
T 3sre_A          125 NTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSF  204 (355)
T ss_dssp             CCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEE
T ss_pred             CcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccE
Confidence            43 454442 2  467788776543    223444433 245789999999987776541                 244


Q ss_pred             EEEEeCccCCCcceEeeccccCcEEEEEecCC--eEE-EeecCCcEEEEEccCCcccc----cCCCCCeeEEEEeC-CCC
Q 023772          126 LRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--EII-GGSVDGTVRTFDIRVGRELS----DDLGQPVNCISMSN-DGN  197 (277)
Q Consensus       126 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~g~~d~~i~i~d~~~~~~~~----~~~~~~v~~~~~s~-~~~  197 (277)
                      +.-+|..  .   .......-.....+.++++  .++ +-+..+.|..|++.....+.    -......-.+++++ +|+
T Consensus       205 vyr~d~~--~---~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~  279 (355)
T 3sre_A          205 VTYYSPN--D---VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGD  279 (355)
T ss_dssp             EEEECTT--C---CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCC
T ss_pred             EEEEECC--e---EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCc
Confidence            5555542  1   1122111223455666654  344 44567889999985321110    02234566788999 598


Q ss_pred             EEEEEecC-CeEEEEECC
Q 023772          198 CILASCLD-STLRLLDRS  214 (277)
Q Consensus       198 ~l~~~~~d-~~i~~wd~~  214 (277)
                      +.+++..+ +.|..||..
T Consensus       280 lwva~~~~g~~v~~~~P~  297 (355)
T 3sre_A          280 LWVGCHPNGMRIFFYDAE  297 (355)
T ss_dssp             EEEEEESCHHHHHSCCTT
T ss_pred             EEEEecCCceEEEEECCC
Confidence            77766544 244444543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.70  E-value=0.13  Score=49.34  Aligned_cols=231  Identities=10%  Similarity=0.136  Sum_probs=132.3

Q ss_pred             EEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeEEeecc-
Q 023772           24 ARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVST-GRVIRKFRGH-  101 (277)
Q Consensus        24 ~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~-~~~~~~~~~h-  101 (277)
                      .-.+|..+.++--. ..++.|+|+.+...++.+.-. .+|.-..|...... +-.. +..|..|+++. ..+.+-|..| 
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~-e~VvfWkWis~~~l-~lVT-~~aVyHW~~~~~s~P~k~fdR~~  146 (1630)
T 1xi4_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNTV-ALVT-DNAVYHWSMEGESQPVKMFDRHS  146 (1630)
T ss_pred             hccCCCcceEEEec-CCeEEEeehHHhhhhcccccC-CCceEEEecCCCee-EEEc-CCeEEEeccCCCCccHHHHhcch
Confidence            44567766666543 689999999987777766653 46777777655433 2222 46899999974 3444444444 


Q ss_pred             ---cCceeEEEEecCCCEEEEEe-------CCCcEEEEeCccCCCcceEeeccccCcEEEEEec----CCeEEEe----e
Q 023772          102 ---ESEVNAVKFNEYSSVVVSAG-------YDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT----KTEIIGG----S  163 (277)
Q Consensus       102 ---~~~v~~i~~~~~~~~l~s~~-------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~g----~  163 (277)
                         ...|..-..+++.+.++-.|       -.|.+.+|.....   ..+.+++|......+...    +..+++-    .
T Consensus       147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~---~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~  223 (1630)
T 1xi4_A          147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK---VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQ  223 (1630)
T ss_pred             hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc---cchhhhHhHhhhheeccCCCCCCceEEEEEEecC
Confidence               45666667777777765433       3578888876532   223334443332222221    1112211    1


Q ss_pred             cCCcEEEEEccCC----ccccc----------CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccce
Q 023772          164 VDGTVRTFDIRVG----RELSD----------DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKS  229 (277)
Q Consensus       164 ~d~~i~i~d~~~~----~~~~~----------~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~  229 (277)
                      ..+++.+-++...    ..+..          ....-.-++..++.-..+..-..-|.|++||+.++.++..-+-.....
T Consensus       224 ~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~i  303 (1630)
T 1xi4_A          224 AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETI  303 (1630)
T ss_pred             CCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCce
Confidence            1267888887543    11110          012234456777777777778889999999999998875433222222


Q ss_pred             eeeeeEecCCCceEEeecCCCeEEEEECcCccce
Q 023772          230 FKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVV  263 (277)
Q Consensus       230 ~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~  263 (277)
                      +.. +...+.+..++. ...|.|.--.+++..++
T Consensus       304 F~~-~~~~~~~g~~~v-nr~G~vl~v~v~~~~iv  335 (1630)
T 1xi4_A          304 FVT-APHEATAGIIGV-NRKGQVLSVCVEEENII  335 (1630)
T ss_pred             EEe-ccCCCCCceEEE-cCCceEEEEEEccchhh
Confidence            222 222233444444 47777777776665554

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.68  E-value=0.3  Score=43.11  Aligned_cols=225  Identities=6%  Similarity=-0.048  Sum_probs=116.4

Q ss_pred             CCCcEEEEcCCCCe-eEEEEeccCccEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCce-eEEeecccCceeEEEEecCC
Q 023772           38 KDRTIRLWNPHRGI-HIKTYKSHGREVRDVHVTADNSKLISC-GGDRQIFYWDVSTGRV-IRKFRGHESEVNAVKFNEYS  114 (277)
Q Consensus        38 ~d~~v~iwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~t~-s~d~~v~~wd~~~~~~-~~~~~~h~~~v~~i~~~~~~  114 (277)
                      ....|+..++.... ........-.....++|++.++.|+-+ ...+.|..++++.... ...+...-.....+++.+.+
T Consensus        16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~   95 (619)
T 3s94_A           16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG   95 (619)
T ss_dssp             CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred             ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence            34678888876542 122222234567899999877766644 4567899999876532 22222223567889999855


Q ss_pred             C-EEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEeec--CCcEEEEEccCCc--ccccCCCCCe
Q 023772          115 S-VVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSV--DGTVRTFDIRVGR--ELSDDLGQPV  187 (277)
Q Consensus       115 ~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~--d~~i~i~d~~~~~--~~~~~~~~~v  187 (277)
                      . +..+-...+.|.+.++......  ............+.+++  ..+.....  ...|...++....  .+........
T Consensus        96 ~~ly~~d~~~~~I~v~~~dG~~~~--~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P  173 (619)
T 3s94_A           96 EKLYWTDSETNRIEVSNLDGSLRK--VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWP  173 (619)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCE--EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSE
T ss_pred             CEEEEEeCCCCEEEEEECCCCCEE--EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCC
Confidence            5 5555566788999988643221  12211112223334433  33333222  3455555554221  1111223457


Q ss_pred             eEEEEeCCCCEE-EEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeee
Q 023772          188 NCISMSNDGNCI-LASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKF  266 (277)
Q Consensus       188 ~~~~~s~~~~~l-~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~  266 (277)
                      +.+++++++..| .+-...+.|..+|+..........+..  ......++..+ ....+-...+.|...|..+++....+
T Consensus       174 ~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~--~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i  250 (619)
T 3s94_A          174 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSL--PHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREI  250 (619)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEEC
T ss_pred             cEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCC--CCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEE
Confidence            899999875555 444556788888886433322222111  11122233333 44445566778988898888765554


Q ss_pred             c
Q 023772          267 K  267 (277)
Q Consensus       267 ~  267 (277)
                      .
T Consensus       251 ~  251 (619)
T 3s94_A          251 H  251 (619)
T ss_dssp             C
T ss_pred             e
Confidence            4

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.62  E-value=0.17  Score=40.97  Aligned_cols=105  Identities=10%  Similarity=0.107  Sum_probs=66.4

Q ss_pred             CEEEEEeCCCcEEEEcCCCCeeEEEEecc-CccEEEEEE--cCCCCEEEEE--eCCCcEEEEECCCCceeEEeec----c
Q 023772           31 NYCLSCGKDRTIRLWNPHRGIHIKTYKSH-GREVRDVHV--TADNSKLISC--GGDRQIFYWDVSTGRVIRKFRG----H  101 (277)
Q Consensus        31 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~h-~~~v~~~~~--~~~~~~l~t~--s~d~~v~~wd~~~~~~~~~~~~----h  101 (277)
                      ..++.++.||.|.-.|..+|+.+-+++.. ..++....-  .+.+..++.+  ..||.+..++.++|.....+.-    .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            46788899999999999999988888754 122222110  0112234433  5899999999988865443331    1


Q ss_pred             cCceeEEE----E-----ecCCCEEEEEeCCCcEEEEeCccCCC
Q 023772          102 ESEVNAVK----F-----NEYSSVVVSAGYDQSLRAWDCRSHST  136 (277)
Q Consensus       102 ~~~v~~i~----~-----~~~~~~l~s~~~d~~i~iwd~~~~~~  136 (277)
                      .+++.. .    +     ...+..+++|+.+|.+...|+++++.
T Consensus        91 ~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~  133 (339)
T 2be1_A           91 TSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEI  133 (339)
T ss_dssp             TCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCE
T ss_pred             cccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcE
Confidence            222221 0    0     01456788999999999999887654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.48  E-value=0.42  Score=42.28  Aligned_cols=224  Identities=4%  Similarity=-0.123  Sum_probs=128.8

Q ss_pred             CCCcEEEEcCCCCeeEEEEe-ccCccEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCC
Q 023772           38 KDRTIRLWNPHRGIHIKTYK-SHGREVRDVHVTADNSKLI-SCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSS  115 (277)
Q Consensus        38 ~d~~v~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~-t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~  115 (277)
                      ....|+..++.+......+. ..-..+..++|++.++.|+ +-..++.|..++++.......+.........+++.+.+.
T Consensus        13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~   92 (628)
T 4a0p_A           13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGK   92 (628)
T ss_dssp             ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT
T ss_pred             eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCC
Confidence            45678888887654333222 1234678999998777665 445678999999876544333332224567889987655


Q ss_pred             -EEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEee--cCCcEEEEEccCCcc-cccCCCCCeeE
Q 023772          116 -VVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGS--VDGTVRTFDIRVGRE-LSDDLGQPVNC  189 (277)
Q Consensus       116 -~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~--~d~~i~i~d~~~~~~-~~~~~~~~v~~  189 (277)
                       +..+-...+.|.+.++.....  .............+.+++  ..+....  ..+.|...++..... .........+.
T Consensus        93 ~LY~tD~~~~~I~v~~~dG~~~--~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~G  170 (628)
T 4a0p_A           93 NLYWADTGTNRIEVSKLDGQHR--QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANG  170 (628)
T ss_dssp             EEEEEETTTTEEEEEETTSTTC--EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEE
T ss_pred             EEEEEECCCCEEEEEecCCCcE--EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcce
Confidence             445555678899888764322  222222223345555554  2333332  245666666643221 11122346789


Q ss_pred             EEEeCCCCEEEEE-ecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeec
Q 023772          190 ISMSNDGNCILAS-CLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFK  267 (277)
Q Consensus       190 ~~~s~~~~~l~~~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~  267 (277)
                      ++++++++.|..+ ...+.|..+|+..... +.+.......  ...++.. +.+..+-...+.|...|..+++....+.
T Consensus       171 lalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P--~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~  245 (628)
T 4a0p_A          171 LTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHP--FGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQ  245 (628)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCE--EEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             EEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCc--eEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEEe
Confidence            9999976655444 5677899999865433 3333222112  2233333 4455555667889888987776665554

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.45  E-value=0.32  Score=40.69  Aligned_cols=222  Identities=10%  Similarity=0.212  Sum_probs=126.6

Q ss_pred             eCCCcEEEEcCCCCeeE-EEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCC
Q 023772           37 GKDRTIRLWNPHRGIHI-KTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSS  115 (277)
Q Consensus        37 s~d~~v~iwd~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~  115 (277)
                      +.+..|.|-|+.++... +.-..    --+.-.+|..+.|+-=+ ..++.+||+++.+.+.++.-. .+|.--.|-....
T Consensus        45 ~~~~~vvIiDl~~~~~~~rrpi~----AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~-e~VvfWkWis~~~  118 (494)
T 1bpo_A           45 GEQAQVVIIDMNDPSNPIRRPIS----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNT  118 (494)
T ss_dssp             TTCCEEEEEETTSTTSCEEEECC----CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEEEETTE
T ss_pred             CCCCeEEEEECCCCCcceecccc----cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC-CCceEEEecCCCe
Confidence            44458888898775433 22211    13455677776665443 689999999999988877643 4565667765543


Q ss_pred             EEEEEeCCCcEEEEeCccCCCcceEeecccc----CcEEEEEecCCe---EEEee------cCCcEEEEEccCCcc-ccc
Q 023772          116 VVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQ----DSVMSVCLTKTE---IIGGS------VDGTVRTFDIRVGRE-LSD  181 (277)
Q Consensus       116 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~---~~~g~------~d~~i~i~d~~~~~~-~~~  181 (277)
                      + +-.+ +..|.-|++.. ...+...++.+.    ..+..+..+++.   +++|-      ..|.+.+|..+.... ...
T Consensus       119 l-~lVT-~taVyHWsi~~-~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ie  195 (494)
T 1bpo_A          119 V-ALVT-DNAVYHWSMEG-ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIE  195 (494)
T ss_dssp             E-EEEC-SSEEEEEESSS-SCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEEC
T ss_pred             E-EEEc-CCeeEEecccC-CCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchhe
Confidence            3 3332 56799999865 345666665443    335555555543   33332      346677887765421 111


Q ss_pred             CCCCCeeEEEEeCCC----CEEEE-Eec---CCeEEEEECCCC---------ceEEEE-eccccceeeeeeEecCCCceE
Q 023772          182 DLGQPVNCISMSNDG----NCILA-SCL---DSTLRLLDRSTG---------ELLQEY-KGHICKSFKTDCCLTNSDAHV  243 (277)
Q Consensus       182 ~~~~~v~~~~~s~~~----~~l~~-~~~---d~~i~~wd~~~~---------~~~~~~-~~~~~~~~~~~~~~~~~~~~l  243 (277)
                      .+....  ..+-.+|    ..|++ +..   .+.+++.++...         +.+..+ .......+......++....+
T Consensus       196 Ghaa~F--~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygvi  273 (494)
T 1bpo_A          196 GHAASF--AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVV  273 (494)
T ss_dssp             CSEEEE--EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEE
T ss_pred             eeeeee--EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEE
Confidence            111111  1111111    11222 221   268899988432         111111 111223345556677777777


Q ss_pred             EeecCCCeEEEEECcCccceeeeccC
Q 023772          244 TGGSEDGYIYFWDLVDASVVAKFKAH  269 (277)
Q Consensus       244 ~sgs~d~~i~iwd~~~~~~~~~~~~h  269 (277)
                      ..-+.-|.|.+||++++.++..-+--
T Consensus       274 yviTK~G~i~lyDleTgt~i~~nrIs  299 (494)
T 1bpo_A          274 FLITKYGYIHLYDLETGTCIYMNRIS  299 (494)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             EEEecCceEEEEecccceeeeeeccc
Confidence            77789999999999999998665533

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.32  E-value=0.31  Score=39.12  Aligned_cols=231  Identities=10%  Similarity=0.049  Sum_probs=112.8

Q ss_pred             CCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCe---eEEE-EeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 023772           18 EGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI---HIKT-YKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGR   93 (277)
Q Consensus        18 ~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~---~~~~-~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~   93 (277)
                      ...+.++.|.+++..++ ++.++.|... ...|+   .+.. .......+.++.+.+  +.++.++.++.|.. ..+.|+
T Consensus        35 ~~~~~~v~~~~~~~~~~-~G~~g~i~~s-~DgG~tW~~~~~~~~~~~~~~~~i~~~~--~~~~~~g~~g~i~~-S~DgG~  109 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWL-VGVNATLMET-RDGGQTWEPRTLVLDHSDYRFNSVSFQG--NEGWIVGEPPIMLH-TTDGGQ  109 (327)
T ss_dssp             SSCEEEEEESSSSCEEE-EETTTEEEEE-SSTTSSCEECCCCCSCCCCEEEEEEEET--TEEEEEEETTEEEE-ESSTTS
T ss_pred             CCcEEEEEECCCCcEEE-EcCCCeEEEe-CCCCCCCeECCCCCCCCCccEEEEEecC--CeEEEEECCCeEEE-ECCCCC
Confidence            45789999988777777 5666765332 22222   1110 112245788899976  34444556665444 233333


Q ss_pred             eeEEee---cccCceeEEEEecCCCEEEEEeCCCcEEE-EeCccCCCcceEeeccccCcEEEEEecCC-eEEEeecCCcE
Q 023772           94 VIRKFR---GHESEVNAVKFNEYSSVVVSAGYDQSLRA-WDCRSHSTEPIQIIDSFQDSVMSVCLTKT-EIIGGSVDGTV  168 (277)
Q Consensus        94 ~~~~~~---~h~~~v~~i~~~~~~~~l~s~~~d~~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~d~~i  168 (277)
                      .-....   .+...+..+.+.+++..++.+ .++.|.. .|-  . .............+..+.+.+. .++..+.++.+
T Consensus       110 tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~Dg--G-~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~  185 (327)
T 2xbg_A          110 SWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTKDS--G-KNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSF  185 (327)
T ss_dssp             SCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEESST--T-SSEEEEECSCCCCEEEEEECTTSCEEEEETTSSE
T ss_pred             CceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEcCC--C-CCCEEeecCCCcceEEEEEcCCCcEEEEECCCcE
Confidence            222211   233456778777766666554 4665532 221  1 1111111222334555555433 34444445554


Q ss_pred             EE-EEc--cCCcccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEecc--ccceeeeeeEecCCCceE
Q 023772          169 RT-FDI--RVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGH--ICKSFKTDCCLTNSDAHV  243 (277)
Q Consensus       169 ~i-~d~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l  243 (277)
                      .. .|-  .+-+.+.......+..+.+++++..+ ..+.+|.+++.+...++--..+...  ..........+.+++.++
T Consensus       186 ~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~  264 (327)
T 2xbg_A          186 YSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVW  264 (327)
T ss_dssp             EEEECTTCSSCEEEECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEE
T ss_pred             EEEeCCCCCceeECCCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEE
Confidence            43 332  12222222334567888999988755 5556788877643223322222110  000112333455666666


Q ss_pred             EeecCCCeEEEEECcCc
Q 023772          244 TGGSEDGYIYFWDLVDA  260 (277)
Q Consensus       244 ~sgs~d~~i~iwd~~~~  260 (277)
                      +.|. ++.| ++..+.|
T Consensus       265 ~~g~-~g~i-~~S~DgG  279 (327)
T 2xbg_A          265 LAGG-AGAL-LCSQDGG  279 (327)
T ss_dssp             EEES-TTCE-EEESSTT
T ss_pred             EEeC-CCeE-EEeCCCC
Confidence            6654 6666 3444434

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.01  E-value=0.75  Score=40.67  Aligned_cols=196  Identities=7%  Similarity=-0.069  Sum_probs=115.8

Q ss_pred             CcEEEEEEeCCCCEEE-EEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeE
Q 023772           19 GAVLAARFNGDGNYCL-SCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKL-ISCGGDRQIFYWDVSTGRVIR   96 (277)
Q Consensus        19 ~~V~~~~~~~~~~~l~-s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~t~s~d~~v~~wd~~~~~~~~   96 (277)
                      ..+..++|++.+..|+ +-..++.|..+++........+.........+++.+.++.| ++-...+.|.+.+++......
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~  116 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV  116 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence            4567899998655555 55667888888876544333343333467889998766655 454567889999987554322


Q ss_pred             EeecccCceeEEEEecCCCEEEEEe--CCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeE-EEeecCCcEEEE
Q 023772           97 KFRGHESEVNAVKFNEYSSVVVSAG--YDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEI-IGGSVDGTVRTF  171 (277)
Q Consensus        97 ~~~~h~~~v~~i~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~g~~d~~i~i~  171 (277)
                      -+...-....++++.|....|+-+.  ..+.|...++.....  ...... ......+.+++  ..+ ++-...+.|..+
T Consensus       117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~--~~l~~~-~~~P~GlalD~~~~~LY~aD~~~~~I~~~  193 (628)
T 4a0p_A          117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER--TTLVPN-VGRANGLTIDYAKRRLYWTDLDTNLIESS  193 (628)
T ss_dssp             EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC--EEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce--EEEECC-CCCcceEEEccccCEEEEEECCCCEEEEE
Confidence            2223334567899998654544444  256677777654322  222222 22344555553  344 444556788888


Q ss_pred             EccCCc-ccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCce
Q 023772          172 DIRVGR-ELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGEL  218 (277)
Q Consensus       172 d~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~  218 (277)
                      |+.... ++..........+++.. +..+.+-...+.|...|..+++.
T Consensus       194 d~dG~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~  240 (628)
T 4a0p_A          194 NMLGLNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQN  240 (628)
T ss_dssp             ETTSCSCEEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred             cCCCCceEEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCc
Confidence            875432 22111223455777765 45555555678899999766643

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.82  E-value=0.38  Score=38.92  Aligned_cols=55  Identities=5%  Similarity=0.026  Sum_probs=26.0

Q ss_pred             cEEEEEccCCc--ccccCCCCCeeEEEEeCCCCEEEEEecCC------eEEEEECCCCceEEE
Q 023772          167 TVRTFDIRVGR--ELSDDLGQPVNCISMSNDGNCILASCLDS------TLRLLDRSTGELLQE  221 (277)
Q Consensus       167 ~i~i~d~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d~------~i~~wd~~~~~~~~~  221 (277)
                      .+.+||+.+.+  .+...........+...+++.++.|+.++      .+.++++++++.+..
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~  348 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQ  348 (357)
T ss_dssp             CCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred             eEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence            46788887542  11111111111122234677778887543      355568877766543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.64  E-value=0.81  Score=38.17  Aligned_cols=106  Identities=19%  Similarity=0.212  Sum_probs=73.8

Q ss_pred             eCCCCEEEEEeCCCcEEEEcCCCCeeEEEEecc----CccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---------
Q 023772           27 NGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSH----GREVRDVHVTADNSKLISCGGDRQIFYWDVSTGR---------   93 (277)
Q Consensus        27 ~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~---------   93 (277)
                      ..+|..++.+- ++.||.=++..+...+.++..    ...|..+..+|+|++|+..+ +..|.|-.+..+.         
T Consensus        29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred             EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence            45666666644 377787777654455565543    23688999999999988775 5588888886321         


Q ss_pred             ---eeEEeec------ccCceeEEEEecC---CCEEEEEeCCCcEEEEeCccC
Q 023772           94 ---VIRKFRG------HESEVNAVKFNEY---SSVVVSAGYDQSLRAWDCRSH  134 (277)
Q Consensus        94 ---~~~~~~~------h~~~v~~i~~~~~---~~~l~s~~~d~~i~iwd~~~~  134 (277)
                         ..+++.-      ...+|..+.|+|-   +..|++-..|++|++||+...
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s  159 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNS  159 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCT
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccC
Confidence               1223332      2467999999986   457888889999999999753

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.61  E-value=0.72  Score=37.44  Aligned_cols=101  Identities=14%  Similarity=0.144  Sum_probs=62.6

Q ss_pred             CCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCee--EEEEe---ccCccEEEEEEcCC---CCEEEEEeC-C-----Cc
Q 023772           18 EGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIH--IKTYK---SHGREVRDVHVTAD---NSKLISCGG-D-----RQ   83 (277)
Q Consensus        18 ~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~--~~~~~---~h~~~v~~~~~~~~---~~~l~t~s~-d-----~~   83 (277)
                      -..-..++|.|+|+++++ ..++.|++++  .++.  +..+.   ........++++|+   +..|+.+.. .     ..
T Consensus        30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred             CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence            344568999999996665 5569999998  4432  11111   12346889999998   555554432 2     67


Q ss_pred             EEEEECCCCc-----e-eEEee---cccCceeEEEEecCCCEEEEEe
Q 023772           84 IFYWDVSTGR-----V-IRKFR---GHESEVNAVKFNEYSSVVVSAG  121 (277)
Q Consensus        84 v~~wd~~~~~-----~-~~~~~---~h~~~v~~i~~~~~~~~l~s~~  121 (277)
                      |..++...+.     . +..+.   ........+.|.|++.+.++.+
T Consensus       107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            8888876432     1 12232   1111235799999998777654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.56  E-value=1.6  Score=42.36  Aligned_cols=217  Identities=10%  Similarity=0.193  Sum_probs=117.9

Q ss_pred             eCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCE
Q 023772           37 GKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSV  116 (277)
Q Consensus        37 s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~  116 (277)
                      +....|.|-|+.++......   .-.--+.-.+|..+.|+-= ...++.+||+++...+.++.- ..+|.--.|-....+
T Consensus        45 ~~~~~vvIidl~~~~~~~rr---pi~AdsAIMnP~~~iiALr-ag~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~l  119 (1630)
T 1xi4_A           45 GEQAQVVIIDMNDPSNPIRR---PISADSAIMNPASKVIALK-AGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTV  119 (1630)
T ss_pred             CCCceEEEEECCCCCCcccc---cccchhhccCCCcceEEEe-cCCeEEEeehHHhhhhccccc-CCCceEEEecCCCee
Confidence            44457888888775432111   1111234456766555443 478999999999887777654 445666677655443


Q ss_pred             EEEEeCCCcEEEEeCccCCCcceEeeccc----cCcEEEEEecCCe---EEEe------ecCCcEEEEEccCCcc-cccC
Q 023772          117 VVSAGYDQSLRAWDCRSHSTEPIQIIDSF----QDSVMSVCLTKTE---IIGG------SVDGTVRTFDIRVGRE-LSDD  182 (277)
Q Consensus       117 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~---~~~g------~~d~~i~i~d~~~~~~-~~~~  182 (277)
                       +-.+ +..|.-|++.. ...|...+..+    ...+..+..+++.   +++|      ...|.+.+|..+.+.. ....
T Consensus       120 -~lVT-~~aVyHW~~~~-~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~ieg  196 (1630)
T 1xi4_A          120 -ALVT-DNAVYHWSMEG-ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEG  196 (1630)
T ss_pred             -EEEc-CCeEEEeccCC-CCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhH
Confidence             2222 45799999864 33344444433    2234455555433   3333      2457788888765421 1111


Q ss_pred             C------------CCCeeEEEEeCCCCEEEEEecCCeEEEEECCCC---c------eEEEE-eccccceeeeeeEecCCC
Q 023772          183 L------------GQPVNCISMSNDGNCILASCLDSTLRLLDRSTG---E------LLQEY-KGHICKSFKTDCCLTNSD  240 (277)
Q Consensus       183 ~------------~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~---~------~~~~~-~~~~~~~~~~~~~~~~~~  240 (277)
                      +            ..+..-++|....      ...+.+++-++...   .      .+..+ .......+......++..
T Consensus       197 ha~~F~~~~~~~~~~~~~l~~f~~~~------~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~  270 (1630)
T 1xi4_A          197 HAASFAQFKMEGNAEESTLFCFAVRG------QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH  270 (1630)
T ss_pred             hHhhhheeccCCCCCCceEEEEEEec------CCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecccc
Confidence            1            1111122222111      11267888887432   1      11111 111112344445567777


Q ss_pred             ceEEeecCCCeEEEEECcCccceeeec
Q 023772          241 AHVTGGSEDGYIYFWDLVDASVVAKFK  267 (277)
Q Consensus       241 ~~l~sgs~d~~i~iwd~~~~~~~~~~~  267 (277)
                      ..+..-+.-|.|.+||+.+|.++..-+
T Consensus       271 g~iy~itk~G~~~~~d~~t~~~i~~~r  297 (1630)
T 1xi4_A          271 DVVFLITKYGYIHLYDLETGTCIYMNR  297 (1630)
T ss_pred             CEEEEEecCceEEEEecccchhhhhcc
Confidence            777777889999999999998875443

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.10  E-value=1.5  Score=39.20  Aligned_cols=191  Identities=12%  Similarity=0.093  Sum_probs=97.3

Q ss_pred             CCCCEEEEEeCC----CcEEEEcCCCCeeEEEE-e------ccCccEEEEEEcC-CCCEEEEEeCC------CcEEEEEC
Q 023772           28 GDGNYCLSCGKD----RTIRLWNPHRGIHIKTY-K------SHGREVRDVHVTA-DNSKLISCGGD------RQIFYWDV   89 (277)
Q Consensus        28 ~~~~~l~s~s~d----~~v~iwd~~~~~~~~~~-~------~h~~~v~~~~~~~-~~~~l~t~s~d------~~v~~wd~   89 (277)
                      .++..++.||.+    ..+.+||+.+++....- .      .....-.++...+ +++.++.||.+      ..+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            456677777754    46788888877654333 1      1111123344443 66677777644      35788888


Q ss_pred             CCCc--eeEEeecccCceeEEEEecCCCEEEEEeCCC--cEEEEeCccCCCcceEe---eccccCcEEEEEec---CCeE
Q 023772           90 STGR--VIRKFRGHESEVNAVKFNEYSSVVVSAGYDQ--SLRAWDCRSHSTEPIQI---IDSFQDSVMSVCLT---KTEI  159 (277)
Q Consensus        90 ~~~~--~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~~  159 (277)
                      .+.+  .+..+..... -.++....++++++.||.++  .+.+||+.+..-.....   .........++..+   ...+
T Consensus       476 ~t~~W~~~~~~p~~R~-~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy  554 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRF-RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI  554 (695)
T ss_dssp             TTTEEEECCCCSBCCB-SCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred             CCCcEEECCCCCCCcc-cceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence            7643  2222211111 12233324778888887655  68899986542111110   00001111112223   3345


Q ss_pred             EEeec--C-----CcEEEEEccCCcc-----cc---c--CCCCCeeEEEEeCCCCEEEEEec--------CCeEEEEECC
Q 023772          160 IGGSV--D-----GTVRTFDIRVGRE-----LS---D--DLGQPVNCISMSNDGNCILASCL--------DSTLRLLDRS  214 (277)
Q Consensus       160 ~~g~~--d-----~~i~i~d~~~~~~-----~~---~--~~~~~v~~~~~s~~~~~l~~~~~--------d~~i~~wd~~  214 (277)
                      +.|+.  +     ..+.+||+.+..-     +.   .  .....-.+++...++..++.|+.        ...+.+||..
T Consensus       555 v~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~  634 (695)
T 2zwa_A          555 ILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPL  634 (695)
T ss_dssp             EECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred             EECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence            55655  2     3588899876651     11   1  01111112333333677777764        3458999998


Q ss_pred             CCceE
Q 023772          215 TGELL  219 (277)
Q Consensus       215 ~~~~~  219 (277)
                      +++..
T Consensus       635 t~~W~  639 (695)
T 2zwa_A          635 SETLT  639 (695)
T ss_dssp             TTEEE
T ss_pred             CCeEE
Confidence            87654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=95.00  E-value=2.6  Score=40.21  Aligned_cols=173  Identities=11%  Similarity=0.164  Sum_probs=97.7

Q ss_pred             cEEEEECCCCceeEEeecc-cCceeEEEEe---cC-CCEEEEEe----------CCCcEEEEeCccCCCcceEeeccccC
Q 023772           83 QIFYWDVSTGRVIRKFRGH-ESEVNAVKFN---EY-SSVVVSAG----------YDQSLRAWDCRSHSTEPIQIIDSFQD  147 (277)
Q Consensus        83 ~v~~wd~~~~~~~~~~~~h-~~~v~~i~~~---~~-~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~  147 (277)
                      .+++.|..+.+.+..+.-- ...+.+++.-   .+ ..+++.|.          ..|.|.+|++.....+.+ ......+
T Consensus       808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv-~~~~v~g  886 (1158)
T 3ei3_A          808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTV-AEKEVKG  886 (1158)
T ss_dssp             EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEE-EEEEESS
T ss_pred             EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEE-EEEEcCC
Confidence            4777887777766555432 2234444432   22 35677665          347799998863222111 1123456


Q ss_pred             cEEEEEecCCeEEEeecCCcEEEEEccCCcccccCC--CCCeeEEEEeCCCCEEEEEecCCeEEEE--ECCCCceEEEEe
Q 023772          148 SVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDL--GQPVNCISMSNDGNCILASCLDSTLRLL--DRSTGELLQEYK  223 (277)
Q Consensus       148 ~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~d~~i~~w--d~~~~~~~~~~~  223 (277)
                      .+.+++.-...+++| ..+++++|++...+.+....  -..+..+.....+++++.|..-..+.++  +...++++ .+.
T Consensus       887 ~v~al~~~~g~Lla~-ig~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~-~~a  964 (1158)
T 3ei3_A          887 AVYSMVEFNGKLLAS-INSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFE-EIA  964 (1158)
T ss_dssp             CEEEEEEETTEEEEE-ETTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEE-EEE
T ss_pred             cCEEEeeeCCEEEEE-cCCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEE-EEE
Confidence            677777544555544 46889999997654332111  1113333444457889998877777764  44444443 333


Q ss_pred             ccccceeeeeeEecCCCceEEeecCCCeEEEEECcC
Q 023772          224 GHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVD  259 (277)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~  259 (277)
                      ........+.+.+-.+ ..++.+..+|++.+.....
T Consensus       965 ~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          965 RDFNPNWMSAVEILDD-DNFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             ECCSCBCEEEEEEEET-TEEEEEETTSEEEEEEECT
T ss_pred             eecccccEEEEEEEcc-CcEEEEcCCCcEEEEecCC
Confidence            3333344444444443 4667788999999887554

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.74  E-value=2.2  Score=38.18  Aligned_cols=194  Identities=9%  Similarity=0.091  Sum_probs=96.1

Q ss_pred             CCCCEEEEEeCC----CcEEEEECCCCceeEEe-e------cccCceeEEEEec-CCCEEEEEeCCC------cEEEEeC
Q 023772           70 ADNSKLISCGGD----RQIFYWDVSTGRVIRKF-R------GHESEVNAVKFNE-YSSVVVSAGYDQ------SLRAWDC  131 (277)
Q Consensus        70 ~~~~~l~t~s~d----~~v~~wd~~~~~~~~~~-~------~h~~~v~~i~~~~-~~~~l~s~~~d~------~i~iwd~  131 (277)
                      .++..++.||.+    ..+.+||..+++-...- .      .....-.++...+ ++++++.||.++      .+.+||+
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            456677777753    45788888766422111 0      1111112333343 677777777543      4777887


Q ss_pred             ccCCCcceEeeccccCcEEEEEe-cCCeEEEeecCC--cEEEEEccCCc--cccc----CCC-CCeeEEEEeCC-CCEEE
Q 023772          132 RSHSTEPIQIIDSFQDSVMSVCL-TKTEIIGGSVDG--TVRTFDIRVGR--ELSD----DLG-QPVNCISMSND-GNCIL  200 (277)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~d~--~i~i~d~~~~~--~~~~----~~~-~~v~~~~~s~~-~~~l~  200 (277)
                      .+..-.....+.........+.+ .+..++.|+.++  .+.+||+.+..  .+..    ... ..-.++.+..+ +..++
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv  555 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII  555 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred             CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence            65321111111111111223333 455566676654  68889987653  1111    001 11223555655 66677


Q ss_pred             EEec--C-----CeEEEEECCCCce-----EEEEecc-ccceeeeeeEecCCCceEEeecC--------CCeEEEEECcC
Q 023772          201 ASCL--D-----STLRLLDRSTGEL-----LQEYKGH-ICKSFKTDCCLTNSDAHVTGGSE--------DGYIYFWDLVD  259 (277)
Q Consensus       201 ~~~~--d-----~~i~~wd~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~l~sgs~--------d~~i~iwd~~~  259 (277)
                      .|+.  +     ..+..||+.+.+.     -...... ........++...++++++.|+.        ...+.+||..+
T Consensus       556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t  635 (695)
T 2zwa_A          556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLS  635 (695)
T ss_dssp             ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred             ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCC
Confidence            7765  2     3588999988761     1222211 11111122223332555555542        35699999988


Q ss_pred             ccce
Q 023772          260 ASVV  263 (277)
Q Consensus       260 ~~~~  263 (277)
                      .+..
T Consensus       636 ~~W~  639 (695)
T 2zwa_A          636 ETLT  639 (695)
T ss_dssp             TEEE
T ss_pred             CeEE
Confidence            7554

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=94.16  E-value=2.2  Score=35.67  Aligned_cols=70  Identities=14%  Similarity=0.165  Sum_probs=45.6

Q ss_pred             CCCeeEEEEeCC---CCEEEEEecCCeEEEEECCCC--ceEEEEeccc-------cceeeeeeEecCCCceEEe--ecCC
Q 023772          184 GQPVNCISMSND---GNCILASCLDSTLRLLDRSTG--ELLQEYKGHI-------CKSFKTDCCLTNSDAHVTG--GSED  249 (277)
Q Consensus       184 ~~~v~~~~~s~~---~~~l~~~~~d~~i~~wd~~~~--~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~s--gs~d  249 (277)
                      ..+|..+.|+|-   +..|++-..|+.||+||+...  ++. .+....       ......+.||++++-.|..  .+..
T Consensus       124 ~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~  202 (452)
T 3pbp_A          124 KSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEG  202 (452)
T ss_dssp             CCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTS
T ss_pred             CCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCC
Confidence            457999999995   567888899999999999752  222 232110       0123456678886654554  4577


Q ss_pred             CeEEE
Q 023772          250 GYIYF  254 (277)
Q Consensus       250 ~~i~i  254 (277)
                      |-|+-
T Consensus       203 GDIYA  207 (452)
T 3pbp_A          203 GDIFA  207 (452)
T ss_dssp             CEEEE
T ss_pred             CCEEE
Confidence            77764

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=93.85  E-value=3.6  Score=37.09  Aligned_cols=229  Identities=11%  Similarity=0.130  Sum_probs=122.3

Q ss_pred             CCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEe----ccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 023772           18 EGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYK----SHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGR   93 (277)
Q Consensus        18 ~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~----~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~   93 (277)
                      ...|.++.-..+|.+-+ |..+| +..||...-   ..+.    .....|.++....++ .|-.|..+| +..||..+.+
T Consensus        21 ~n~V~~I~qD~~G~lWi-gT~~G-L~ryDG~~~---~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~   93 (758)
T 3ott_A           21 ASVVSCFLQDSEGLIWI-GSNKG-LFSYDGYST---QQHFTYGENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADR   93 (758)
T ss_dssp             CCCEEEEEECTTSCEEE-EESSC-EEEECSSCE---EECSCTTSTTSSCEEEEEEETTT-EEEEEETTE-EEEEETTTTE
T ss_pred             cceEEEEEECCCCCEEE-EECCC-ccccCCCce---EEEEccCCCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCE
Confidence            45699998888886544 44555 667885332   1221    123458888777665 455555555 7899987764


Q ss_pred             eeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEee-c-cccCcEEEEEecC-CeEEEeecCCcEEE
Q 023772           94 VIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQII-D-SFQDSVMSVCLTK-TEIIGGSVDGTVRT  170 (277)
Q Consensus        94 ~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~-~~~~~~~~~~~~~-~~~~~g~~d~~i~i  170 (277)
                      ...........|.++.. .++.+ -.++.+ -+..+|............ . .....+.++..+. ..+..|+.+| +..
T Consensus        94 f~~~~~~~~~~i~~i~~-~~g~l-Wigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~G-l~~  169 (758)
T 3ott_A           94 YEQPETDFPTDVRTMAL-QGDTL-WLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGTYNG-LCR  169 (758)
T ss_dssp             ECCCSCCCCSCEEEEEE-ETTEE-EEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEEETTE-EEE
T ss_pred             EECcccCCCceEEEEEe-cCCcE-EEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEeCCC-Hhh
Confidence            32211112335666654 34544 445555 477888754322111000 0 1123466666553 4466676554 667


Q ss_pred             EEccCCccc--ccC-----CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceE
Q 023772          171 FDIRVGREL--SDD-----LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHV  243 (277)
Q Consensus       171 ~d~~~~~~~--~~~-----~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  243 (277)
                      ||....+..  ...     ....|.++..++++..|..|.. +.+..+|..+++... +.... ...+...+..+++.+.
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~-~~~l~-~~~i~~i~~d~~g~lW  246 (758)
T 3ott_A          170 YIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQ-TEAFH-NNSIKSLALDGNGDLL  246 (758)
T ss_dssp             EETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEE-EEEEE-EEEEEEEEECTTCCEE
T ss_pred             CccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEe-ccCCC-CCeEEEEEEcCCCCEE
Confidence            887654321  111     1224888888887765555554 468889987765432 22111 1122333334455543


Q ss_pred             EeecCCCeEEEEECcCccc
Q 023772          244 TGGSEDGYIYFWDLVDASV  262 (277)
Q Consensus       244 ~sgs~d~~i~iwd~~~~~~  262 (277)
                      + |+.+ -+.+++..+++.
T Consensus       247 i-gT~~-Gl~~~~~~~~~~  263 (758)
T 3ott_A          247 A-GTDN-GLYVYHNDTTPL  263 (758)
T ss_dssp             E-EETT-EEEEECCTTSCC
T ss_pred             E-EeCC-ceeEEecCCCcE
Confidence            3 3444 478888876654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=93.70  E-value=2.3  Score=34.46  Aligned_cols=102  Identities=9%  Similarity=0.172  Sum_probs=62.6

Q ss_pred             CCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCe-eEEEEe---ccCccEEEEEEcCC---CCEEEEEeC----C----C
Q 023772           18 EGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI-HIKTYK---SHGREVRDVHVTAD---NSKLISCGG----D----R   82 (277)
Q Consensus        18 ~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~-~~~~~~---~h~~~v~~~~~~~~---~~~l~t~s~----d----~   82 (277)
                      -..-..++|.|+|+++++ ..++.|++++ ..++ .+..+.   ........++++|+   +..|+.+..    +    .
T Consensus        28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             CSCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            345678999999986655 5569999997 3454 222211   12346889999997   556554432    3    5


Q ss_pred             cEEEEECCCC-------cee-EEeecc-cCceeEEEEecCCCEEEEEe
Q 023772           83 QIFYWDVSTG-------RVI-RKFRGH-ESEVNAVKFNEYSSVVVSAG  121 (277)
Q Consensus        83 ~v~~wd~~~~-------~~~-~~~~~h-~~~v~~i~~~~~~~~l~s~~  121 (277)
                      .|..|+...+       +.+ ..+... ...-..+.|.|++.+.++.+
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G  153 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG  153 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence            7778877654       111 112211 11235689999998877754

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=93.70  E-value=2.3  Score=34.44  Aligned_cols=109  Identities=11%  Similarity=0.093  Sum_probs=67.5

Q ss_pred             eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeE--EEE----eccCccEEEEEEcCC---CCEEEEE---eC
Q 023772           13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHI--KTY----KSHGREVRDVHVTAD---NSKLISC---GG   80 (277)
Q Consensus        13 ~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~--~~~----~~h~~~v~~~~~~~~---~~~l~t~---s~   80 (277)
                      ++..--..-..++|.|+|+++++--..|.|++++...++..  ..+    .........++++|+   +.+|+..   ..
T Consensus        26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~  105 (347)
T 3das_A           26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS  105 (347)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred             EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence            34444556679999999998888665899999987655432  111    123456789999985   4555432   24


Q ss_pred             CCcEEEEECCCC----------cee-EEeec-ccCceeEEEEecCCCEEEEEe
Q 023772           81 DRQIFYWDVSTG----------RVI-RKFRG-HESEVNAVKFNEYSSVVVSAG  121 (277)
Q Consensus        81 d~~v~~wd~~~~----------~~~-~~~~~-h~~~v~~i~~~~~~~~l~s~~  121 (277)
                      ++.|.-|.+..+          +.+ ..+.. ....-..|.|.|++.+.++.+
T Consensus       106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A          106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred             CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence            556666766541          111 12221 111235689999998888765

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=93.60  E-value=2.1  Score=33.54  Aligned_cols=222  Identities=12%  Similarity=0.060  Sum_probs=111.8

Q ss_pred             cEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeEEe
Q 023772           20 AVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVST-GRVIRKF   98 (277)
Q Consensus        20 ~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~-~~~~~~~   98 (277)
                      .|..++....-..++  . ||.|..|-....-.+..-......|..++.......++  . ||.|..|-... +++- .-
T Consensus        25 ~i~~ia~G~~h~~~l--~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l--~-~G~v~~wG~n~~Gqlg-~P   97 (282)
T 3qhy_B           25 GVDAIAGGYFHGLAL--K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLAL--K-DGEVIAWGGNEDGQTT-VP   97 (282)
T ss_dssp             SCCEEEECSSEEEEE--E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEE--E-TTEEEEEECCTTSTTC-CC
T ss_pred             CCcEEEeCCCeEEEE--E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEE--E-CCEEEEeeCCCCCCCC-CC
Confidence            566666554433333  4 89999996433211111111123566776655443444  4 89999997654 2211 00


Q ss_pred             ecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCCcEEEEEccCCcc
Q 023772           99 RGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRE  178 (277)
Q Consensus        99 ~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~  178 (277)
                      ..-...|..++.......++  . ||.+..|-.........  .......+..+.......+.-. ||.+..|-.....+
T Consensus        98 ~~~~~~v~~ia~G~~hs~al--~-~G~v~~wG~n~~gqlg~--~~~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gq  171 (282)
T 3qhy_B           98 AEARSGVDAIAAGAWASYAL--K-DGKVIAWGDDSDGQTTV--PAEAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQ  171 (282)
T ss_dssp             GGGSSSEEEEEEETTEEEEE--E-TTEEEEEECCTTSTTSC--CGGGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTST
T ss_pred             cccCCCeEEEECcCCEEEEE--e-CCeEEEecCCCCCcCCC--CccCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCC
Confidence            11134677777766544444  4 89999997543221111  1112345666666555543334 79999987654322


Q ss_pred             c--ccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEE
Q 023772          179 L--SDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWD  256 (277)
Q Consensus       179 ~--~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd  256 (277)
                      +  +......|..++-..... ++.  .||.++.|=......+. ..... ...+...+..... .++. . ||.|+.|-
T Consensus       172 lg~p~~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg-~p~~~-~~~v~~i~~G~~h-~~al-~-~g~v~~wG  243 (282)
T 3qhy_B          172 TTVPAEAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTT-VPTEA-LSGVSAIASGEWY-SLAL-K-NGKVIAWG  243 (282)
T ss_dssp             TSCCGGGGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTC-CCGGG-GSSCCEEEECSSC-EEEE-E-TTEEEEES
T ss_pred             CCCceecCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCC-CCccc-CCCceEEEcCCCE-EEEE-E-CCEEEEec
Confidence            2  222234566666554433 333  59999999764321111 00000 1112222222222 2333 2 99999997


Q ss_pred             CcCccc
Q 023772          257 LVDASV  262 (277)
Q Consensus       257 ~~~~~~  262 (277)
                      ......
T Consensus       244 ~n~~gq  249 (282)
T 3qhy_B          244 SSRTAP  249 (282)
T ss_dssp             TTCCCC
T ss_pred             CCCCcc
Confidence            665433

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.52  E-value=3  Score=35.17  Aligned_cols=105  Identities=11%  Similarity=0.061  Sum_probs=63.4

Q ss_pred             CCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeE--EEEec------cCccEEEEEEcCC---CCEEEEEeC------
Q 023772           18 EGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHI--KTYKS------HGREVRDVHVTAD---NSKLISCGG------   80 (277)
Q Consensus        18 ~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~--~~~~~------h~~~v~~~~~~~~---~~~l~t~s~------   80 (277)
                      -..-..++|.|+|+++++--..+.|++++..++...  ..+..      ..+....++|+|+   +.+|+.+..      
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            345669999999998887554457888876555432  22221      2345679999996   555554432      


Q ss_pred             -------CCcEEEEECCCC-------ceeE-Eeec-ccCceeEEEEecCCCEEEEEeC
Q 023772           81 -------DRQIFYWDVSTG-------RVIR-KFRG-HESEVNAVKFNEYSSVVVSAGY  122 (277)
Q Consensus        81 -------d~~v~~wd~~~~-------~~~~-~~~~-h~~~v~~i~~~~~~~~l~s~~~  122 (277)
                             ...|.-|+...+       +.+. .+.. .......|.|.+++.+.++.+.
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                   235666655322       1121 1221 1224678999999998887654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=93.08  E-value=2.2  Score=32.24  Aligned_cols=104  Identities=4%  Similarity=0.004  Sum_probs=57.9

Q ss_pred             CceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCc-----ceEeec-cccCcEEEEEecCCeEEEeecCCcEEEEEccCC
Q 023772          103 SEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTE-----PIQIID-SFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVG  176 (277)
Q Consensus       103 ~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~  176 (277)
                      ..+..++|+|++.+.+.  .+|.+.-.+..+....     ...+-. ... .-.++-++++..+-++.||.|.-++-.+.
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav~dG~iyr~~pP~~  117 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAVSKDKLYKASPPQS  117 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEEETTEEEEESCCCS
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEeCCCEEEEeCCCcC
Confidence            36679999998886655  7777666665332111     011100 000 01345556655333337899887775432


Q ss_pred             cc--cc---cCC-C---CCeeEEEEeCCCCEEEEEecCCeEEEE
Q 023772          177 RE--LS---DDL-G---QPVNCISMSNDGNCILASCLDSTLRLL  211 (277)
Q Consensus       177 ~~--~~---~~~-~---~~v~~~~~s~~~~~l~~~~~d~~i~~w  211 (277)
                      ..  +.   ... .   ..+..+.|+|+|...++.  |+.++-.
T Consensus       118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~  159 (236)
T 1tl2_A          118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKA  159 (236)
T ss_dssp             TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEE
T ss_pred             CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEec
Confidence            21  10   000 1   367899999999876665  7876443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=92.68  E-value=3.5  Score=33.55  Aligned_cols=153  Identities=12%  Similarity=0.155  Sum_probs=77.4

Q ss_pred             cEEEEEEcCCCCEEEEEe------------CCCcEEEEECCCC--cee-EEeec-----ccCceeEEEEec--CCC-EEE
Q 023772           62 EVRDVHVTADNSKLISCG------------GDRQIFYWDVSTG--RVI-RKFRG-----HESEVNAVKFNE--YSS-VVV  118 (277)
Q Consensus        62 ~v~~~~~~~~~~~l~t~s------------~d~~v~~wd~~~~--~~~-~~~~~-----h~~~v~~i~~~~--~~~-~l~  118 (277)
                      ....+++.+++..+++++            .+|.|.++|.++.  +.. -.+.+     ..-....+.+.+  +++ +|+
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            456677777664444442            6899999998742  211 11222     223556777765  343 344


Q ss_pred             EEe-C--CCcEEEEeCccCCCc--ceEeeccc-cCcEEEEEecCC-eEEEeec------------------CCcEEEEEc
Q 023772          119 SAG-Y--DQSLRAWDCRSHSTE--PIQIIDSF-QDSVMSVCLTKT-EIIGGSV------------------DGTVRTFDI  173 (277)
Q Consensus       119 s~~-~--d~~i~iwd~~~~~~~--~~~~~~~~-~~~~~~~~~~~~-~~~~g~~------------------d~~i~i~d~  173 (277)
                      .+. .  +.+|.+|++......  .+..+... -.....+...+. .++.+..                  .+.+..+|.
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~  210 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  210 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence            432 2  467788876543221  11112111 122334433332 2332221                  133444444


Q ss_pred             cCCcccccCCCCCeeEEEEeCCCCEEEEE-ecCCeEEEEECCC
Q 023772          174 RVGRELSDDLGQPVNCISMSNDGNCILAS-CLDSTLRLLDRST  215 (277)
Q Consensus       174 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~~wd~~~  215 (277)
                      ...+.+. ..-...+.++|+||++.|..+ +..+.|+.|++..
T Consensus       211 ~~~~~~~-~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          211 NDVRVVA-EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             TCCEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             CeEEEee-cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence            2111111 111357889999999876555 4678999999853

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=92.17  E-value=6.4  Score=35.44  Aligned_cols=234  Identities=10%  Similarity=0.083  Sum_probs=125.0

Q ss_pred             CcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEecc------CccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 023772           19 GAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSH------GREVRDVHVTADNSKLISCGGDRQIFYWDVSTG   92 (277)
Q Consensus        19 ~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h------~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~   92 (277)
                      ..|.++....+|.+.+. .. +-+..++..+++... +...      ...|.++...+++..|-.|.. +-+..+|..++
T Consensus       146 ~~i~~i~~d~~g~lWig-t~-~Gl~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~  221 (758)
T 3ott_A          146 NTIYSIIRTKDNQIYVG-TY-NGLCRYIPSNGKFEG-IPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTG  221 (758)
T ss_dssp             SCEEEEEECTTCCEEEE-ET-TEEEEEETTTTEEEE-ECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTT
T ss_pred             CeEEEEEEcCCCCEEEE-eC-CCHhhCccCCCceEE-ecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCC
Confidence            45788887778876664 33 357778877665332 2111      124888888777665444443 45888898776


Q ss_pred             ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEee-----ccccCcEEEEEecCC-eEEEeecCC
Q 023772           93 RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQII-----DSFQDSVMSVCLTKT-EIIGGSVDG  166 (277)
Q Consensus        93 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~g~~d~  166 (277)
                      +...........|.++...+++.+.+.. .+| +.+++............     .-....+.++..+.. .+..|+..|
T Consensus       222 ~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~~G  299 (758)
T 3ott_A          222 QIKQTEAFHNNSIKSLALDGNGDLLAGT-DNG-LYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGTDYG  299 (758)
T ss_dssp             EEEEEEEEEEEEEEEEEECTTCCEEEEE-TTE-EEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEESSS
T ss_pred             eEEeccCCCCCeEEEEEEcCCCCEEEEe-CCc-eeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeCCc
Confidence            5432111123457888877777776644 444 77788654322111100     011234667766654 477787766


Q ss_pred             cEEEEEccCCcc-cc------cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCc--eEEEEecc-----ccceeee
Q 023772          167 TVRTFDIRVGRE-LS------DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGE--LLQEYKGH-----ICKSFKT  232 (277)
Q Consensus       167 ~i~i~d~~~~~~-~~------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~--~~~~~~~~-----~~~~~~~  232 (277)
                       +.++....... ..      ......|.++.-+.+|.. -.|..+ -+..++..+++  ....+...     .....+.
T Consensus       300 -l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~l-WiGt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~  376 (758)
T 3ott_A          300 -ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFY-WFGGAN-GLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIR  376 (758)
T ss_dssp             -EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCE-EEEETT-EEEEESCTTSSCCCCEEECTTCSSSCCSCSCEE
T ss_pred             -ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCE-EEeeCC-cceeecccccccceeEEeccCCcCCCCCCCceE
Confidence             54443221111 00      112346888888888874 444555 47777765532  22223211     0011122


Q ss_pred             eeEecCCCceEEeecCCCeEEEEECcCccce
Q 023772          233 DCCLTNSDAHVTGGSEDGYIYFWDLVDASVV  263 (277)
Q Consensus       233 ~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~  263 (277)
                      ......++.+-+ |+ ++-+..||..+++..
T Consensus       377 ~i~~d~~g~lWi-gt-~~GL~~~~~~~~~~~  405 (758)
T 3ott_A          377 HIYEDKEQQLWI-AT-DGSINRYDYATRQFI  405 (758)
T ss_dssp             EEEECTTSCEEE-EE-TTEEEEEETTTTEEE
T ss_pred             EEEECCCCCEEE-Ee-CCcHhhcCcCCCcEE
Confidence            223334454333 34 346888998877553

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=92.08  E-value=3.5  Score=32.22  Aligned_cols=164  Identities=15%  Similarity=0.135  Sum_probs=86.0

Q ss_pred             CCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeEEeecccCceeEEEEecCCCEE
Q 023772           39 DRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVST-GRVIRKFRGHESEVNAVKFNEYSSVV  117 (277)
Q Consensus        39 d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~-~~~~~~~~~h~~~v~~i~~~~~~~~l  117 (277)
                      ||.|..|-....-.+..-..-...|..++.-.....++  . ||.|..|-... +++- .-......|..++.......+
T Consensus        80 ~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~hs~al--~-~G~v~~wG~n~~gqlg-~~~~~~~~i~~i~~G~~~~~~  155 (282)
T 3qhy_B           80 DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYAL--K-DGKVIAWGDDSDGQTT-VPAEAQSGVTALDGGVYTALA  155 (282)
T ss_dssp             TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETTEEEEE--E-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECSSEEEE
T ss_pred             CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCCEEEEE--e-CCeEEEecCCCCCcCC-CCccCCCCeEEEEcccCEEEE
Confidence            77777775332111111111123577776665443444  3 89999997654 2221 111123457667665544333


Q ss_pred             EEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCCcEEEEEccCCccc--ccCCCCCeeEEEEeCC
Q 023772          118 VSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGREL--SDDLGQPVNCISMSND  195 (277)
Q Consensus       118 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~--~~~~~~~v~~~~~s~~  195 (277)
                      +  . ||.+..|-........+  .......+..+.......+.- .||.+..|-....-++  .......|..++-...
T Consensus       156 l--~-~G~v~~wG~n~~gqlg~--p~~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~  229 (282)
T 3qhy_B          156 V--K-NGGVIAWGDNYFGQTTV--PAEAQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEW  229 (282)
T ss_dssp             E--E-TTEEEEEECCTTSTTSC--CGGGGSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSS
T ss_pred             E--E-CCEEEEecCCCCCCCCC--ceecCCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCC
Confidence            3  3 79999997543221111  111234566776666654333 6999999975433222  1112235666665544


Q ss_pred             CCEEEEEecCCeEEEEECCC
Q 023772          196 GNCILASCLDSTLRLLDRST  215 (277)
Q Consensus       196 ~~~l~~~~~d~~i~~wd~~~  215 (277)
                      .. ++..  ||.++.|=...
T Consensus       230 h~-~al~--~g~v~~wG~n~  246 (282)
T 3qhy_B          230 YS-LALK--NGKVIAWGSSR  246 (282)
T ss_dssp             CE-EEEE--TTEEEEESTTC
T ss_pred             EE-EEEE--CCEEEEecCCC
Confidence            43 3333  99999997644

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=92.07  E-value=4.1  Score=32.97  Aligned_cols=103  Identities=13%  Similarity=0.136  Sum_probs=59.3

Q ss_pred             CCcEEEEEEeCCCC-EEEEEeCCCcEEEEcCCCCeeEEEE-------eccCccEEEEEEcCC---CCEEEEEe-C-----
Q 023772           18 EGAVLAARFNGDGN-YCLSCGKDRTIRLWNPHRGIHIKTY-------KSHGREVRDVHVTAD---NSKLISCG-G-----   80 (277)
Q Consensus        18 ~~~V~~~~~~~~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-------~~h~~~v~~~~~~~~---~~~l~t~s-~-----   80 (277)
                      -..-..++|.|+|+ ++++ ...|.|++++.. +.....+       .........++++|+   +.+|+.+. .     
T Consensus        17 l~~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g   94 (353)
T 2g8s_A           17 LDHPWALAFLPDNHGMLIT-LRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG   94 (353)
T ss_dssp             ESSEEEEEECSTTCCEEEE-ETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred             CCCcEEEEEcCCCCEEEEE-eCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence            34567999999999 6555 567899999853 3321111       112345689999996   55555442 2     


Q ss_pred             --CCcEEEEECCCC--c-----ee-EEeec---ccCceeEEEEecCCCEEEEEeC
Q 023772           81 --DRQIFYWDVSTG--R-----VI-RKFRG---HESEVNAVKFNEYSSVVVSAGY  122 (277)
Q Consensus        81 --d~~v~~wd~~~~--~-----~~-~~~~~---h~~~v~~i~~~~~~~~l~s~~~  122 (277)
                        ...|..|++..+  .     .+ ..+..   ....-..+.|.|++.+.++.+.
T Consensus        95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd  149 (353)
T 2g8s_A           95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGE  149 (353)
T ss_dssp             CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECC
T ss_pred             CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECC
Confidence              235666666432  1     11 11110   0112356999999977776543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=91.87  E-value=4.3  Score=32.81  Aligned_cols=103  Identities=10%  Similarity=0.066  Sum_probs=56.4

Q ss_pred             CCcEEEEEEeCC---CCEEEEE-eCC-----CcEEEEcCCCCe-----e-EEEEe---ccCccEEEEEEcCCCCEEEEEe
Q 023772           18 EGAVLAARFNGD---GNYCLSC-GKD-----RTIRLWNPHRGI-----H-IKTYK---SHGREVRDVHVTADNSKLISCG   79 (277)
Q Consensus        18 ~~~V~~~~~~~~---~~~l~s~-s~d-----~~v~iwd~~~~~-----~-~~~~~---~h~~~v~~~~~~~~~~~l~t~s   79 (277)
                      ......++|+|+   +..|+.+ ...     ..|..|+...+.     . +..+.   ...+....++|.|++...++.+
T Consensus        74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A           74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            456789999998   4444433 322     567777765431     1 12232   1112346899999997777654


Q ss_pred             CC-------------CcEEEEECCCC-------------c-eeEEeecccCceeEEEEec-CCCEEEEEeC
Q 023772           80 GD-------------RQIFYWDVSTG-------------R-VIRKFRGHESEVNAVKFNE-YSSVVVSAGY  122 (277)
Q Consensus        80 ~d-------------~~v~~wd~~~~-------------~-~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~  122 (277)
                      ..             ++|.-++.+..             . .+. -.++.. ...++|++ +++++++-..
T Consensus       154 ~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~-a~G~rn-p~g~a~d~~~g~l~v~d~g  222 (352)
T 2ism_A          154 EVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVY-SLGHRN-PQGLAWHPKTGELFSSEHG  222 (352)
T ss_dssp             CTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEE-EECCSE-ECCCEECTTTCCEEEEEEC
T ss_pred             CCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEE-EEcCCC-cccEEEECCCCCEEEEEcC
Confidence            21             45655655431             1 111 123333 45688998 5666665433

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=91.39  E-value=3.6  Score=31.04  Aligned_cols=172  Identities=6%  Similarity=-0.069  Sum_probs=86.2

Q ss_pred             CCCEEEEEeCCCcEEEEcCCCCe------eEEEEec-cCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce------e
Q 023772           29 DGNYCLSCGKDRTIRLWNPHRGI------HIKTYKS-HGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRV------I   95 (277)
Q Consensus        29 ~~~~l~s~s~d~~v~iwd~~~~~------~~~~~~~-h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~------~   95 (277)
                      ....|+...+| +++.=.+..+.      ...++-. .=..+..++|+|++.+.+ . .+|.+.-.+..+...      -
T Consensus         3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYa-V-~~G~Ly~~~~~t~~~~~W~~s~   79 (236)
T 1tl2_A            3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYG-V-LNDKIYKGTPPTHDNDNWMGRA   79 (236)
T ss_dssp             CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEE-E-ETTEEEEESCCCSTTCCHHHHC
T ss_pred             cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEE-E-eCCeEEEECCCCCCcccccccc
Confidence            34566667777 54444333322      1122211 123677999999776444 4 677666655543211      1


Q ss_pred             EEeec-ccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcc-----eEeeccccCcEEEEEecCCe-EEEeecCCcE
Q 023772           96 RKFRG-HESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEP-----IQIIDSFQDSVMSVCLTKTE-IIGGSVDGTV  168 (277)
Q Consensus        96 ~~~~~-h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~g~~d~~i  168 (277)
                      ..+.. --....++.|.+++.+.++  .||.|.-++..+.....     ..+-...-..+..+.+.++. |.... |+.+
T Consensus        80 t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~l  156 (236)
T 1tl2_A           80 KKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQF  156 (236)
T ss_dssp             EEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEE
T ss_pred             cEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcE
Confidence            11110 0011367889999988877  66999888764322111     11111111344666667665 33444 7775


Q ss_pred             EEEEccCCcc--cc------c-CCCCCeeEEEEeCCCCEEEEEecCCeE
Q 023772          169 RTFDIRVGRE--LS------D-DLGQPVNCISMSNDGNCILASCLDSTL  208 (277)
Q Consensus       169 ~i~d~~~~~~--~~------~-~~~~~v~~~~~s~~~~~l~~~~~d~~i  208 (277)
                      .-.-......  ..      . ..-...+.+.|.+++..+++.  ++.+
T Consensus       157 yr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~  203 (236)
T 1tl2_A          157 YKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF  203 (236)
T ss_dssp             EEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred             EecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence            4322221110  00      0 011234556788888765554  6633

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=86.80  E-value=9.2  Score=35.66  Aligned_cols=38  Identities=21%  Similarity=0.303  Sum_probs=33.2

Q ss_pred             CeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEe
Q 023772          186 PVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYK  223 (277)
Q Consensus       186 ~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~  223 (277)
                      .+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            46677788888999999999999999999999988754

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=85.44  E-value=13  Score=29.98  Aligned_cols=101  Identities=12%  Similarity=0.132  Sum_probs=55.3

Q ss_pred             CCcEEEEEEeCC---CCEEE-EEeC---C----CcEEEEcCCCC-------ee-EEEEec-cCccEEEEEEcCCCCEEEE
Q 023772           18 EGAVLAARFNGD---GNYCL-SCGK---D----RTIRLWNPHRG-------IH-IKTYKS-HGREVRDVHVTADNSKLIS   77 (277)
Q Consensus        18 ~~~V~~~~~~~~---~~~l~-s~s~---d----~~v~iwd~~~~-------~~-~~~~~~-h~~~v~~~~~~~~~~~l~t   77 (277)
                      .+....++|+|+   +..|+ +-+.   +    ..|..|+...+       +. +..+.. ..+....+.|.|++.++++
T Consensus        72 ~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt  151 (354)
T 3a9g_A           72 EAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYIT  151 (354)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEE
T ss_pred             CCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEE
Confidence            356789999997   44444 4332   3    45666765443       11 111221 1123467999999987777


Q ss_pred             EeC-------------CCcEEEEECCCC---------ceeEEeecccCceeEEEEec-CCCEEEEE
Q 023772           78 CGG-------------DRQIFYWDVSTG---------RVIRKFRGHESEVNAVKFNE-YSSVVVSA  120 (277)
Q Consensus        78 ~s~-------------d~~v~~wd~~~~---------~~~~~~~~h~~~v~~i~~~~-~~~~l~s~  120 (277)
                      .+.             .++|.-++.+..         ..+. -.++..+ ..++|++ +++++++-
T Consensus       152 ~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~-a~G~rnp-~Gla~d~~~g~l~v~d  215 (354)
T 3a9g_A          152 TGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIW-SYGHRNP-QGIDWHRASGVMVATE  215 (354)
T ss_dssp             CCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEE-EECCSCC-CEEEECTTTCCEEEEE
T ss_pred             ECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEE-EEccCCc-ceEEEeCCCCCEEEEe
Confidence            543             245555555432         0121 1234443 5699999 56666554

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=85.20  E-value=1.8  Score=40.27  Aligned_cols=39  Identities=10%  Similarity=0.150  Sum_probs=33.6

Q ss_pred             CcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEe
Q 023772           19 GAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYK   57 (277)
Q Consensus        19 ~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~   57 (277)
                      ..+.++...++..++++-+.|+++|+|++.++.++.+..
T Consensus       236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            356778888888999999999999999999999887653

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=81.70  E-value=3.8  Score=35.54  Aligned_cols=73  Identities=8%  Similarity=0.144  Sum_probs=51.5

Q ss_pred             CccEEEEEEcCCCCEEEEEe-CCCcEEEEECCCC------ce-------eEEeecccCceeEEEEecCCCEEEEEeCCCc
Q 023772           60 GREVRDVHVTADNSKLISCG-GDRQIFYWDVSTG------RV-------IRKFRGHESEVNAVKFNEYSSVVVSAGYDQS  125 (277)
Q Consensus        60 ~~~v~~~~~~~~~~~l~t~s-~d~~v~~wd~~~~------~~-------~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~  125 (277)
                      ......+.++|+|++++.++ .+.++.++|.+.-      +.       ......-.++.. .+|.++++...|--.|.+
T Consensus       322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlH-t~Fd~~G~aYTtlfidSq  400 (638)
T 3sbq_A          322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLH-TTFDGRGNAYTTLFIDSQ  400 (638)
T ss_dssp             SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEE-EEECSSSEEEEEETTTTE
T ss_pred             CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccE-EEECCCCceEeeeeecce
Confidence            34567889999999987765 5889999998731      11       223333334444 789999955566668999


Q ss_pred             EEEEeCcc
Q 023772          126 LRAWDCRS  133 (277)
Q Consensus       126 i~iwd~~~  133 (277)
                      |..|++..
T Consensus       401 vvkWni~~  408 (638)
T 3sbq_A          401 VVKWNMEE  408 (638)
T ss_dssp             EEEEEHHH
T ss_pred             EEEEeccH
Confidence            99999854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	277
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-30
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-25
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-22
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-22
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-12
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-22
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-21
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	9e-19
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-22
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-18
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-15
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-16
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-11
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-14
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-14
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-09
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-12
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	9e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-12
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-11
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-11
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-11
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.004
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-11
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-11
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-10
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-10
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-09
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-08
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.004
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	8e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	8e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.002
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	3e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	8e-04
d1kv9a2	560	b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogen	0.001
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	0.003

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  114 bits (286), Expect = 1e-30
 Identities = 63/316 (19%), Positives = 110/316 (34%), Gaps = 67/316 (21%)

Query: 6   LPRT-EANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVR 64
           +PR  E   L GH   V    F+   +  +S  +D TI++W+   G   +T K H   V+
Sbjct: 4   IPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ 63

Query: 65  DVHVTA------------------------------------------DNSKLISCGGDR 82
           D+                                              +   ++S   D+
Sbjct: 64  DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK 123

Query: 83  QIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHS------- 135
            I  W+V TG  ++ F GH   V  V+ N+  +++ S   DQ++R W   +         
Sbjct: 124 TIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE 183

Query: 136 -------------TEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDD 182
                        +    I ++              ++ GS D T++ +D+  G  L   
Sbjct: 184 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 243

Query: 183 LG--QPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSD 240
           +G    V  +   + G  IL+   D TLR+ D      ++    H  + F T      + 
Sbjct: 244 VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH--EHFVTSLDFHKTA 301

Query: 241 AHVTGGSEDGYIYFWD 256
            +V  GS D  +  W+
Sbjct: 302 PYVVTGSVDQTVKVWE 317

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 99.4 bits (246), Expect = 8e-25
 Identities = 42/266 (15%), Positives = 83/266 (31%), Gaps = 5/266 (1%)

Query: 13  VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
            L+GH   + A  +  D    +S  +D  + +W+ +    +         V         
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109

Query: 73  SKLISCGGDRQIFYWDVSTGRVIRKFRGHES---EVNAVKFNEYSSVVVSAGYDQSLRAW 129
           + +   G D     +++ T     +     +      +       + +V++  D +   W
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169

Query: 130 DCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELS--DDLGQPV 187
           D  +          +     +S+       + G+ D + + +D+R G            +
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI 229

Query: 188 NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGS 247
           N I    +GN       D+T RL D    + L  Y         T    + S   +  G 
Sbjct: 230 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY 289

Query: 248 EDGYIYFWDLVDASVVAKFKAHSLVV 273
           +D     WD + A        H   V
Sbjct: 290 DDFNCNVWDALKADRAGVLAGHDNRV 315

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 92.5 bits (228), Expect = 2e-22
 Identities = 43/186 (23%), Positives = 76/186 (40%), Gaps = 4/186 (2%)

Query: 31  NYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS 90
           N  ++   D T  LW+   G    T+  H  +V  + +  D    +S   D     WDV 
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214

Query: 91  TGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVM 150
            G   + F GHES++NA+ F    +   +   D + R +D R+         D+    + 
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT 274

Query: 151 SVCLTKTE--IIGGSVDGTVRTFDIRVGRELSDDLG--QPVNCISMSNDGNCILASCLDS 206
           SV  +K+   ++ G  D     +D           G    V+C+ +++DG  +     DS
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334

Query: 207 TLRLLD 212
            L++ +
Sbjct: 335 FLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 92.5 bits (228), Expect = 2e-22
 Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 2/120 (1%)

Query: 13  VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRL--WNPHRGIHIKTYKSHGREVRDVHVTA 70
              GHE  + A  F  +GN   +   D T RL      + +   ++ +    +  V  + 
Sbjct: 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK 280

Query: 71  DNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWD 130
               L++   D     WD           GH++ V+ +   +    V +  +D  L+ W+
Sbjct: 281 SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.8 bits (156), Expect = 1e-12
 Identities = 38/207 (18%), Positives = 73/207 (35%), Gaps = 7/207 (3%)

Query: 54  KTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEY 113
           +T + H  ++  +H   D+  L+S   D ++  WD  T   +       S V    +   
Sbjct: 49  RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108

Query: 114 SSVVVSAGYDQSLRAWDCRSHSTEPIQIID---SFQDSVMSVCLTKTEIIGGSVDGTVRT 170
            + V   G D     ++ ++         +             L   +I+  S D T   
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168

Query: 171 FDIRVGREL--SDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICK 228
           +DI  G++          V  +S++ D    ++   D++ +L D   G   Q + GH  +
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH--E 226

Query: 229 SFKTDCCLTNSDAHVTGGSEDGYIYFW 255
           S     C   +      GS+D     +
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLF 253

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.3 bits (103), Expect = 8e-06
 Identities = 26/187 (13%), Positives = 47/187 (25%), Gaps = 7/187 (3%)

Query: 93  RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSV 152
           R  R  RGH +++ A+ +   S ++VSA  D  L      S++T  +  I      VM+ 
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKL--IIWDSYTTNKVHAIPLRSSWVMTC 103

Query: 153 CLTKTEIIGGSVDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLD 212
               +                 +     +                C             D
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD 163

Query: 213 RSTGELLQEYKGHICKSFKTDCCLTNSDAHVTG-----GSEDGYIYFWDLVDASVVAKFK 267
            +      E              + +            G+ D     WD+ +      F 
Sbjct: 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT 223

Query: 268 AHSLVVK 274
            H   + 
Sbjct: 224 GHESDIN 230

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 92.9 bits (229), Expect = 3e-22
 Identities = 51/282 (18%), Positives = 101/282 (35%), Gaps = 25/282 (8%)

Query: 1   MSVSDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG 60
            +  D      +     +  + +  F+ DG +  +  +DR IR+W+      +   + H 
Sbjct: 104 AANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHE 163

Query: 61  REVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSA 120
           +++  +       KL+S  GDR +  WD+ TG+        +              + + 
Sbjct: 164 QDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAG 223

Query: 121 GYDQSLRAWDCRSHS-----TEPIQIIDSFQDSVMSVCLTKTE--IIGGSVDGTVRTFDI 173
             D+++R WD  +           +     +DSV SV  T+    ++ GS+D +V+ +++
Sbjct: 224 SLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL 283

Query: 174 RVGRELSDDLG--------------QPVNCISMSNDGNCILASCLDSTLRLLDRSTGELL 219
           +     SD                   V  ++ + +   IL+   D  +   D+ +G  L
Sbjct: 284 QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 343

Query: 220 QEYKGH----ICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDL 257
              +GH    I  +      L         GS D     W  
Sbjct: 344 LMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 90.2 bits (222), Expect = 2e-21
 Identities = 60/310 (19%), Positives = 114/310 (36%), Gaps = 38/310 (12%)

Query: 1   MSVSDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPH------------ 48
            ++      E +    H   V   +F+ DG Y L+ G ++T +++               
Sbjct: 45  PALPREIDVELHKSLDHTSVVCCVKFSNDGEY-LATGCNKTTQVYRVSDGSLVARLSDDS 103

Query: 49  ------RGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHE 102
                   ++  +  S    +R V  + D   L +   DR I  WD+   +++   +GHE
Sbjct: 104 AANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHE 163

Query: 103 SEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGG 162
            ++ ++ +      +VS   D+++R WD R+        I+    +V         I  G
Sbjct: 164 QDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAG 223

Query: 163 SVDGTVRTFDIRVGR---------ELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDR 213
           S+D  VR +D   G          E        V  +  + DG  +++  LD +++L + 
Sbjct: 224 SLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL 283

Query: 214 STGELLQEYKG----------HICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVV 263
                  + K              K F      T +D ++  GS+D  + FWD    + +
Sbjct: 284 QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 343

Query: 264 AKFKAHSLVV 273
              + H   V
Sbjct: 344 LMLQGHRNSV 353

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.9 bits (203), Expect = 9e-19
 Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 18/142 (12%)

Query: 9   TEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWN------------PHRGIHIKTY 56
           +E     GH+ +V +  F  DG   +S   DR+++LWN            P+ G    TY
Sbjct: 245 SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 304

Query: 57  KSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAV------KF 110
             H   V  V  T ++  ++S   DR + +WD  +G  +   +GH + V +V        
Sbjct: 305 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL 364

Query: 111 NEYSSVVVSAGYDQSLRAWDCR 132
               +V  +   D   R W  +
Sbjct: 365 GPEYNVFATGSGDCKARIWKYK 386

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.8 bits (226), Expect = 5e-22
 Identities = 61/296 (20%), Positives = 105/296 (35%), Gaps = 44/296 (14%)

Query: 13  VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
           VLKGH+  V+       GN  +S   D T+++W+   G  ++T   H   V    +  + 
Sbjct: 11  VLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI 69

Query: 73  SKLISC--------------------------------------GGDRQIFYWDVSTGRV 94
               S                                         D  +  WD+ TG+ 
Sbjct: 70  IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC 129

Query: 95  IRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCL 154
           +    GH + V           VVS  YD  ++ WD  +     +  +    + V S+  
Sbjct: 130 LHVLMGHVAAV--RCVQYDGRRVVSGAYDFMVKVWDPETE--TCLHTLQGHTNRVYSLQF 185

Query: 155 TKTEIIGGSVDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRS 214
               ++ GS+D ++R +D+  G  +    G       M    N +++   DST+++ D  
Sbjct: 186 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIK 245

Query: 215 TGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHS 270
           TG+ LQ  +G         C   N +  +T  S+DG +  WDL     +       
Sbjct: 246 TGQCLQTLQGPNKHQSAVTCLQFNKNFVIT-SSDDGTVKLWDLKTGEFIRNLVTLE 300

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.8 bits (200), Expect = 2e-18
 Identities = 46/229 (20%), Positives = 82/229 (35%), Gaps = 9/229 (3%)

Query: 45  WNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESE 104
           W        K  K H   V    +    ++++S   D  +  W   TG+ +R   GH   
Sbjct: 1   WRRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59

Query: 105 VNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSV 164
           V + +  +     +              + + E I  +     +V  + L +  ++ GS 
Sbjct: 60  VWSSQMRDN----IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSR 115

Query: 165 DGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKG 224
           D T+R +DI  G+ L   +G       +  DG  +++   D  +++ D  T   L   +G
Sbjct: 116 DATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQG 175

Query: 225 HICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
           H          L     HV  GS D  I  WD+   + +     H  + 
Sbjct: 176 HTN----RVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT 220

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.9 bits (177), Expect = 2e-15
 Identities = 45/194 (23%), Positives = 79/194 (40%), Gaps = 16/194 (8%)

Query: 31  NYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS 90
              +S   D  +++W+P     + T + H    R   +  D   ++S   D  I  WDV 
Sbjct: 148 RRVVSGAYDFMVKVWDPETETCLHTLQGHTN--RVYSLQFDGIHVVSGSLDTSIRVWDVE 205

Query: 91  TGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVM 150
           TG  I    GH+S  + ++  +  +++VS   D +++ WD ++          +   S +
Sbjct: 206 TGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAV 263

Query: 151 SVC-LTKTEIIGGSVDGTVRTFDIRVGREL-------SDDLGQPVNCISMSNDGNCILAS 202
           +     K  +I  S DGTV+ +D++ G  +       S   G  V  I  SN        
Sbjct: 264 TCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVG 323

Query: 203 CLDST----LRLLD 212
             + T    L +LD
Sbjct: 324 SRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (131), Expect = 2e-09
 Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 10/112 (8%)

Query: 29  DGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKL-ISCGGDRQIFYW 87
             N  +S   D T+++W+   G  ++T +   +    V     N    I+   D  +  W
Sbjct: 226 KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 285

Query: 88  DVSTGRVIRKFR-----GHESEVNAVKFNEYSSVVVSAGYDQS----LRAWD 130
           D+ TG  IR        G    V  ++ +    V      + +    L   D
Sbjct: 286 DLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.9 bits (182), Expect = 3e-16
 Identities = 54/265 (20%), Positives = 99/265 (37%), Gaps = 11/265 (4%)

Query: 12  NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTAD 71
           +        V   ++  D    +S  +D TI++W+ +     +    H   V  +    D
Sbjct: 9   HCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--D 64

Query: 72  NSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDC 131
              +I+   D  +  WDV+TG ++     H   V  ++FN    V  S   D+S+  WD 
Sbjct: 65  ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCS--KDRSIAVWDM 122

Query: 132 RSHS-TEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLGQPVNCI 190
            S +     +++   + +V  V      I+  S D T++ ++      +    G      
Sbjct: 123 ASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA 182

Query: 191 SMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDG 250
            +      +++   D+T+RL D   G  L+  +GH              +  +  G+ DG
Sbjct: 183 CLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD----NKRIVSGAYDG 238

Query: 251 YIYFWDLVDASVVAKFKAHSLVVKL 275
            I  WDLV A           +  L
Sbjct: 239 KIKVWDLVAALDPRAPAGTLCLRTL 263

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (141), Expect = 7e-11
 Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 11/151 (7%)

Query: 29  DGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWD 88
           D  Y +S   DRTI++WN      ++T   H R +  +     +  ++S   D  I  WD
Sbjct: 147 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWD 204

Query: 89  VSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRS-------HSTEPIQI 141
           +  G  +R   GHE  V  ++F+     +VS  YD  ++ WD  +         T  ++ 
Sbjct: 205 IECGACLRVLEGHEELVRCIRFDNKR--IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRT 262

Query: 142 IDSFQDSVMSVCLTKTEIIGGSVDGTVRTFD 172
           +      V  +   + +I+  S D T+  +D
Sbjct: 263 LVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 4e-04
 Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 2/34 (5%)

Query: 13  VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWN 46
            L  H G V   +F  D    +S   D TI +W+
Sbjct: 262 TLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.5 bits (168), Expect = 3e-14
 Identities = 22/291 (7%), Positives = 64/291 (21%), Gaps = 30/291 (10%)

Query: 13  VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG---IHIKTYKSHGREVRDVHVT 69
           + +  +  +   +     +  L    D ++ ++        + +     +   +   +  
Sbjct: 6   IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI 65

Query: 70  ADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAW 129
            +    I  G  +         G    +   +      +                     
Sbjct: 66  DNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIE 125

Query: 130 DCRSHSTEPIQIIDSFQDSVMSVCLTK--------TEIIGGSVDGTVRTFDIRVGRELS- 180
                +     I     +S  +    K        + +I G  +  V+ F + +  + + 
Sbjct: 126 VIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNG 185

Query: 181 -----DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQ-------------EY 222
                    Q  +   +  +      S +D  + +                         
Sbjct: 186 TIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL 245

Query: 223 KGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
           K             +     +     DG I  W+L     +  F   +   
Sbjct: 246 KDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDS 296

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (112), Expect = 5e-07
 Identities = 19/224 (8%), Positives = 56/224 (25%), Gaps = 15/224 (6%)

Query: 53  IKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTG---RVIRKFRGHESEVNAVK 109
           ++  ++    + D+ +    S L+    D  +  +          + +   ++  +    
Sbjct: 4   VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63

Query: 110 FNEYSSVVVSAG----------YDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEI 159
           F + + + +  G             S       ++                 +  +   +
Sbjct: 64  FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGL 123

Query: 160 IGGSVDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELL 219
           I            I V    S++        +M  + + ++    +S ++       E  
Sbjct: 124 IEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD 183

Query: 220 QEYKGH--ICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDAS 261
                   +    +    L          S DG +      D  
Sbjct: 184 NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG 227

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 5/62 (8%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 93  RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHS-TEPIQIIDSFQDSVMS 151
           ++++  +  +  ++ +K     S+++   +D SL  +     +    +     ++  ++ 
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 152 VC 153
             
Sbjct: 62  CN 63

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 68.0 bits (164), Expect = 7e-14
 Identities = 29/263 (11%), Positives = 81/263 (30%), Gaps = 15/263 (5%)

Query: 9   TEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIH-----IKTYKSHGREV 63
           T+  +   H      A+ +  G YC S      +R+W+  +  H     I  +    +++
Sbjct: 49  TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDI 108

Query: 64  RDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYD 123
                +   + +          +   +            +  +          ++S   D
Sbjct: 109 SWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDD 168

Query: 124 QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELS--- 180
            ++  ++      +      +     +      +       DGT+  ++   G +     
Sbjct: 169 NTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFE 228

Query: 181 ------DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDC 234
                       V  ++ S DG  I ++  D T+++ + +T ++ +       +      
Sbjct: 229 DDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG-TRIEDQQL 287

Query: 235 CLTNSDAHVTGGSEDGYIYFWDL 257
            +  +   +   S +G+I F + 
Sbjct: 288 GIIWTKQALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.4 bits (126), Expect = 7e-09
 Identities = 31/277 (11%), Positives = 65/277 (23%), Gaps = 20/277 (7%)

Query: 6   LPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRD 65
           LPRT         G  +       G+    C    ++           + Y  H  +   
Sbjct: 12  LPRTA-------RGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTV 63

Query: 66  VHVTADNSKLISCGGDRQIFYWDVSTGRVI--RKFRGHESEVNAVKFNEYSS-----VVV 118
              +       S      +  WD +    I           V  + ++  S         
Sbjct: 64  AKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEG 123

Query: 119 SAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRE 178
              +          S+     Q               +           +        + 
Sbjct: 124 RERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS 183

Query: 179 LSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN 238
              +  + V+ +  + DG+   ++  D T+ L +   G     ++    K+      +  
Sbjct: 184 TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFG 243

Query: 239 SDAHVTG-----GSEDGYIYFWDLVDASVVAKFKAHS 270
                 G      S D  I  W++    V       +
Sbjct: 244 LTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT 280

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.9 bits (156), Expect = 1e-12
 Identities = 37/333 (11%), Positives = 92/333 (27%), Gaps = 69/333 (20%)

Query: 9   TEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG----IHIKTYKSHGREVR 64
             AN  K H+  + +       ++ +SC  D  +++W+           K+Y     +  
Sbjct: 5   ATANAGKAHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSG 62

Query: 65  DVHVTA---------DNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYS- 114
             HV           +   + +      + ++ ++     +K    + ++      ++S 
Sbjct: 63  LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSF 122

Query: 115 --------------SVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQ-------------- 146
                           +V+     +   W     + E   +  ++               
Sbjct: 123 WALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMT 182

Query: 147 --DSVMSVCLTKTEIIG-GSVDGTVRTFDIRVGRELSDDLGQPVN--------------- 188
                 SV +++  +I  G  +GTV+  ++   R L +   Q                  
Sbjct: 183 PSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ 242

Query: 189 ---CISMSNDGNCILASCLD----STLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDA 241
                   +  +    +  +      +  L   T             S+       +S  
Sbjct: 243 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE 302

Query: 242 HVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVK 274
            +     DG + FWD+     +     H   ++
Sbjct: 303 TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE 335

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 9e-06
 Identities = 23/133 (17%), Positives = 42/133 (31%), Gaps = 19/133 (14%)

Query: 1   MSVSDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG 60
           +SV       +     H   V++  FN  G    S G D  +R W+      I T   H 
Sbjct: 272 LSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHC 331

Query: 61  REVRD----VHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSV 116
            ++      + V      L   G       +DV         +  +    +    + +  
Sbjct: 332 DDIEIEEDILAVDEHGDSLAEPGV------FDV---------KFLKKGWRSGMGADLNES 376

Query: 117 VVSAGYDQSLRAW 129
           +     D+S+R +
Sbjct: 377 LCCVCLDRSIRWF 389

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 1e-05
 Identities = 21/131 (16%), Positives = 41/131 (31%), Gaps = 9/131 (6%)

Query: 31  NYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS 90
            Y    G+         H         +H   V  +        L S G D ++ +WDV 
Sbjct: 260 LYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK 319

Query: 91  TGRVIRKFRGHESEV----NAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQ 146
           T   I     H  ++    + +  +E+   +   G    ++             +     
Sbjct: 320 TKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVF-DVKFLK----KGWRSGMGADLN 374

Query: 147 DSVMSVCLTKT 157
           +S+  VCL ++
Sbjct: 375 ESLCCVCLDRS 385

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.0 bits (151), Expect = 4e-12
 Identities = 29/268 (10%), Positives = 69/268 (25%), Gaps = 24/268 (8%)

Query: 14  LKGHEG-AVLAARF--NGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTA 70
             GH    V   +F       Y  S  +   + +W         + + + +    V    
Sbjct: 58  FTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGP 117

Query: 71  DNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWD 130
            +       G R     +      +       + +  V  +            + +R+  
Sbjct: 118 ISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMT 177

Query: 131 CRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDL------- 183
                +        F+ S       K       V+ +  + +  +       +       
Sbjct: 178 VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS 237

Query: 184 -------------GQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSF 230
                         Q         D         D+T+R+ D +T + +Q++     +  
Sbjct: 238 GEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLG 297

Query: 231 KTD-CCLTNSDAHVTGGSEDGYIYFWDL 257
                 +   +  +   S DG + F++L
Sbjct: 298 NQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.2 bits (97), Expect = 3e-05
 Identities = 32/276 (11%), Positives = 58/276 (21%), Gaps = 24/276 (8%)

Query: 19  GAVLAARFNGDGNYCLSC-GKDRTIRLWNPH--RGIHIKTYKSH-GREVRDV--HVTADN 72
                  ++   N      GK   +R  +    +   +  +  H    V  V       +
Sbjct: 18  NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77

Query: 73  SKLISCGGDRQIFYWDVSTGRVIRKF--------RGHESEVNAVKF--NEYSSVVVSAGY 122
             L S     ++  W  +  +             +     ++ + +        VV  G 
Sbjct: 78  QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR 137

Query: 123 DQSLRAWDCRSHSTE------PIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVG 176
           D         S ++         +I          +        G  V      F     
Sbjct: 138 DNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS 197

Query: 177 RELSDDLGQPVNCISMSNDGN--CILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDC 234
                  G  V  +  S D     I             +S   L                
Sbjct: 198 DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA 257

Query: 235 CLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHS 270
                         D  I  WD+  +  V K+    
Sbjct: 258 LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDK 293

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.2 bits (149), Expect = 1e-11
 Identities = 25/151 (16%), Positives = 50/151 (33%), Gaps = 4/151 (2%)

Query: 13  VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
            L+GH  +V+      + NY ++   D+ IR+++      +     H   V  +      
Sbjct: 7   TLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65

Query: 73  SKLISCGGDRQIFYWDVST--GRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWD 130
             L+S   DR +  WD+       + +          +   +    +V+   D +L  W 
Sbjct: 66  -ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 124

Query: 131 CRSHSTEPIQIIDSFQDSVMSVCLTKTEIIG 161
               S+ P    +     V          +G
Sbjct: 125 LPKESSVPDHGEEHDYPLVFHTPEENPYFVG 155

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.4 bits (147), Expect = 1e-11
 Identities = 22/155 (14%), Positives = 51/155 (32%), Gaps = 6/155 (3%)

Query: 45  WNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESE 104
           + P R     T + H   V    +  +++ +I+   D+ I  +D    + + +  GH+  
Sbjct: 1   FVPQRT----TLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGG 55

Query: 105 VNAVKFNEYSSVVV-SAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGS 163
           V A+K+     +V  S      +        +        + +   +        I+ GS
Sbjct: 56  VWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGS 115

Query: 164 VDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNC 198
            D T+  + +     + D   +    +        
Sbjct: 116 RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEEN 150

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.0 bits (112), Expect = 5e-07
 Identities = 32/249 (12%), Positives = 79/249 (31%), Gaps = 27/249 (10%)

Query: 31  NYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLIS------------- 77
            Y ++  +D T+ +W   +   +  +          H   +N   +              
Sbjct: 109 KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS 168

Query: 78  --------CGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAW 129
                      D  +  WDV+  + +    GH   + +  ++      +SA  D ++R W
Sbjct: 169 GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIW 228

Query: 130 DCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLGQPVNC 189
           D  +          +    ++ +      ++  + DG++R +D              ++ 
Sbjct: 229 DLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSA 286

Query: 190 ISMSNDGNCILASCLDSTLRLLDRSTGELLQ-EYKGHICKSFKTDCCLTNSDAHVTGGSE 248
           I+     + IL S  ++   + +  +G+L+         + +            V    +
Sbjct: 287 ITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIW---SVNFKGKTLVAAVEK 343

Query: 249 DGYIYFWDL 257
           DG  +   L
Sbjct: 344 DGQSFLEIL 352

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 2e-04
 Identities = 10/75 (13%), Positives = 22/75 (29%), Gaps = 2/75 (2%)

Query: 17  HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIK-TYKSHGREVRDVHVTADNSKL 75
           H   + A       +  L  G +    ++N   G  +         ++  V+       +
Sbjct: 280 HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LV 338

Query: 76  ISCGGDRQIFYWDVS 90
            +   D Q F   + 
Sbjct: 339 AAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 4e-04
 Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 4/127 (3%)

Query: 146 QDSVMSVC-LTKTEIIGGSVDGTVRTFDIRVGRELSDDLG--QPVNCISMSNDGNCILAS 202
             SV++        +I G+ D  +R +D    + L    G    V  +  ++ G  +++ 
Sbjct: 12  MTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSG 70

Query: 203 CLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASV 262
             D T+R+ D   G     ++GH       D     +  ++  GS D  ++ W L   S 
Sbjct: 71  STDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS 130

Query: 263 VAKFKAH 269
           V      
Sbjct: 131 VPDHGEE 137

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 61.2 bits (146), Expect = 2e-11
 Identities = 29/262 (11%), Positives = 59/262 (22%), Gaps = 6/262 (2%)

Query: 13  VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTY-KSHGREVRDVHVTAD 71
           V  GH  A+ A   + DG    S   +  I  W+   GI  + +   H   +  +  T  
Sbjct: 7   VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT-S 65

Query: 72  NSKLISCGGDRQIFYWDVSTGRV---IRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRA 128
              L +   D  +         V           S+   +  +    + V+A Y      
Sbjct: 66  KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIY 125

Query: 129 WDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLGQPVN 188
              +               S     +             +    +   + +         
Sbjct: 126 SHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSV 185

Query: 189 CISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSE 248
             S +                 +  +                       ++    T GS 
Sbjct: 186 AFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT-GSL 244

Query: 249 DGYIYFWDLVDASVVAKFKAHS 270
           D  +  W++   S        +
Sbjct: 245 DNSVIVWNMNKPSDHPIIIKGA 266

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.4 bits (118), Expect = 6e-08
 Identities = 30/207 (14%), Positives = 61/207 (29%), Gaps = 2/207 (0%)

Query: 50  GIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFR-GHESEVNAV 108
           G   +    H + +  +  +AD   L S   +  I  WD+STG   R F   H + +  +
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61

Query: 109 KFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTV 168
           K      +   +  D  L+         +  + + +   S         +          
Sbjct: 62  KTTSKGDLFTVSWDDH-LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK 120

Query: 169 RTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICK 228
                  G+     +    +C+++SND   +     DS + +   S   + +        
Sbjct: 121 HIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPA 180

Query: 229 SFKTDCCLTNSDAHVTGGSEDGYIYFW 255
              +     N    V        I + 
Sbjct: 181 EITSVAFSNNGAFLVATDQSRKVIPYS 207

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.0 bits (104), Expect = 5e-06
 Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 31  NYCLSCGKDRTIRLWNPHRG--IHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWD 88
               +   D ++ +WN ++     I    +H     +  +  + + ++S G D  I +W+
Sbjct: 237 VRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

Query: 89  VS 90
           V 
Sbjct: 297 VP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 35.7 bits (80), Expect = 0.004
 Identities = 7/34 (20%), Positives = 15/34 (44%)

Query: 13  VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWN 46
           +   H  + + +    +    +S G+D  I+ WN
Sbjct: 263 IKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (146), Expect = 2e-11
 Identities = 13/115 (11%), Positives = 34/115 (29%), Gaps = 2/115 (1%)

Query: 16  GHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKL 75
                + +  +   G +     +   + + + ++         H   V  +         
Sbjct: 222 DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK-PDKYQLHLHESCVLSLKFAYCGKWF 280

Query: 76  ISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWD 130
           +S G D  +  W    G  I +     S V +   +     +V+   D+    ++
Sbjct: 281 VSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (145), Expect = 3e-11
 Identities = 30/247 (12%), Positives = 75/247 (30%), Gaps = 5/247 (2%)

Query: 14  LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNS 73
               +  + + +   DG   +  G+  T+ +W+          +          +     
Sbjct: 93  CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD 152

Query: 74  KLISCGGDRQIFYWDVSTGRV--IRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDC 131
             +                    +R+F+GH    + +  +   + + + G D ++R+WD 
Sbjct: 153 SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL 212

Query: 132 RSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLGQPVNCIS 191
           R           S   S+      +   +G            +  +         V  + 
Sbjct: 213 REGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLK 272

Query: 192 MSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGY 251
            +  G   +++  D+ L       G  + + K     S    C ++  D ++  GS D  
Sbjct: 273 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISVDDKYIVTGSGDKK 329

Query: 252 IYFWDLV 258
              ++++
Sbjct: 330 ATVYEVI 336

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 2e-10
 Identities = 29/268 (10%), Positives = 67/268 (25%), Gaps = 12/268 (4%)

Query: 16  GHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKT-----YKSHGREVRDVHVTA 70
            H   V A   +    +  + G    +++W+     +          +    +R   +  
Sbjct: 49  NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107

Query: 71  DNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWD 130
           D   LI  G    +  WD++      K     S              V            
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167

Query: 131 CRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDG---TVRTFDIRVGRELSDDLGQPV 187
              H+   ++      D    + ++       +                +    D    +
Sbjct: 168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQI 227

Query: 188 NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGS 247
             +     G  +      S + +L  +      +Y+ H+ +S                  
Sbjct: 228 FSLGYCPTGEWLAVGMESSNVEVLHVNKP---DKYQLHLHESCVLSLKFAYCGKWFVSTG 284

Query: 248 EDGYIYFWDLVDASVVAKFKAHSLVVKL 275
           +D  +  W     + + + K  S V+  
Sbjct: 285 KDNLLNAWRTPYGASIFQSKESSSVLSC 312

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 5e-07
 Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 7/121 (5%)

Query: 38  KDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRK 97
            D  I    P     I T  +HG  V  V ++   ++ +  GG   +  WD+S       
Sbjct: 30  PDALIGPGIPRHARQINTL-NHGEVVCAVTISNP-TRHVYTGGKGCVKVWDISHPGNKSP 87

Query: 98  -----FRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSV 152
                    ++ + + K       ++  G   +L  WD  + +      + S   +  ++
Sbjct: 88  VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYAL 147

Query: 153 C 153
            
Sbjct: 148 A 148

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 9e-05
 Identities = 27/204 (13%), Positives = 47/204 (23%), Gaps = 8/204 (3%)

Query: 59  HGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVV 118
             +     HVTAD            +    +           H   V AV  +  +  V 
Sbjct: 8   GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVY 67

Query: 119 SAGYDQSLRAWDCRSH---STEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDI 173
           + G    ++ WD       S        +  + + S  L      +I G    T+  +D+
Sbjct: 68  TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL 126

Query: 174 RVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTD 233
                              +   +     C                Q             
Sbjct: 127 AAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA 186

Query: 234 CCLTNSDAHVT--GGSEDGYIYFW 255
            C+  S+       G  D  +  W
Sbjct: 187 SCIDISNDGTKLWTGGLDNTVRSW 210

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 3e-04
 Identities = 6/42 (14%), Positives = 15/42 (35%)

Query: 5   DLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWN 46
             P   +        +VL+   + D  Y ++   D+   ++ 
Sbjct: 293 RTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.1 bits (141), Expect = 1e-10
 Identities = 32/280 (11%), Positives = 69/280 (24%), Gaps = 25/280 (8%)

Query: 20  AVLAARFNGDGNYCLSCGKDRTIRLWNPHRG--IHIKTYKSHGREVRDVHVTADNSKLIS 77
            +    +N D      C  +  + ++       + +   K H  +V  V    D++++++
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68

Query: 78  CGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTE 137
           CG DR  + W +                 A       +    A    S     C      
Sbjct: 69  CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128

Query: 138 PIQIIDSFQDSVMSVCLTKTEII------GGSVDGTVRTFDIRVGRELSDDLGQPVNCIS 191
              +    +  + S  L+            GS D   R F   +          P     
Sbjct: 129 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKM 188

Query: 192 MSNDGNCILASCLDSTLRLLDRSTGELL-----------------QEYKGHICKSFKTDC 234
              +     +S       +   + G  +                         ++     
Sbjct: 189 PFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLA 248

Query: 235 CLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVK 274
               +++ +     D +   +    A+    F     V K
Sbjct: 249 VTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPK 288

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.1 bits (141), Expect = 1e-10
 Identities = 28/201 (13%), Positives = 64/201 (31%), Gaps = 11/201 (5%)

Query: 56  YKSHGRE-VRDVHVTADNSKLISCGGDRQIFYWDVSTGR--VIRKFRGHESEVNAVKFNE 112
           Y S   E +       D +++  C  + ++  ++ S  +   + + + H  +V  V +  
Sbjct: 2   YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP 61

Query: 113 YSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIG--GSVDGTVRT 170
            S+ +V+ G D++   W  +  + +P  +I     +   V     E     GS    +  
Sbjct: 62  DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI 121

Query: 171 FDIRVGRE------LSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKG 224
                  +      +   +   V  +    +   + A   D   R+      E+ +    
Sbjct: 122 CYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP 181

Query: 225 HICKSFKTDCCLTNSDAHVTG 245
               S      L    +   G
Sbjct: 182 TPWGSKMPFGELMFESSSSCG 202

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.9 bits (130), Expect = 3e-09
 Identities = 41/287 (14%), Positives = 77/287 (26%), Gaps = 27/287 (9%)

Query: 2   SVSDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI--HIKTYKSH 59
             S     + + LK H G V    +  D N  ++CG DR   +W                
Sbjct: 35  EKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRI 94

Query: 60  GREVRDVHVTADNSKLISCGGDRQIFYWDVSTGR----VIRKFRGHESEVNAVKFNEYSS 115
            R  R V    +  K     G R I                  +   S V ++ ++  S 
Sbjct: 95  NRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV 154

Query: 116 VVVSAGYDQSLRAWDCRSHSTEPIQII----------------DSFQDSVMSVCLTKTE- 158
           ++ +   D   R +       E                      S    V  VC +    
Sbjct: 155 LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS 214

Query: 159 -IIGGSVDGTVRTFDIRVGRELS--DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRST 215
            +   S D TV   D      ++       P+  ++   + + ++A+  D    L    +
Sbjct: 215 RVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESS-LVAAGHDCFPVLFTYDS 273

Query: 216 GELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASV 262
                 + G +    ++      +        +           A +
Sbjct: 274 AAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGL 320

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.1 bits (128), Expect = 5e-09
 Identities = 24/178 (13%), Positives = 55/178 (30%), Gaps = 10/178 (5%)

Query: 12  NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTAD 71
                  G V    F+ +G+       D T+ L +  + + + T  S    +  V    +
Sbjct: 195 FESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITE 254

Query: 72  NSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDC 131
           +  L++ G D     +   +      F G             ++       D+   +   
Sbjct: 255 S-SLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEG- 312

Query: 132 RSHSTEPIQIIDSFQDSVMSVCL------TKTEIIGGSVDGTVRTFDIRVGRELSDDL 183
              +     +    ++SV  + +        ++     +DG +  +D+R       DL
Sbjct: 313 --SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALKDL 368

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.0 bits (107), Expect = 2e-06
 Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 4/74 (5%)

Query: 185 QPVNCISMSNDGNCILASCLDSTLRLLDRSTG--ELLQEYKGHICKSFKTDCCLTNSDAH 242
           +P++C + + D   I     +  + + ++S      + E K H      T          
Sbjct: 8   EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEH--NGQVTGVDWAPDSNR 65

Query: 243 VTGGSEDGYIYFWD 256
           +     D   Y W 
Sbjct: 66  IVTCGTDRNAYVWT 79

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 54.5 bits (129), Expect = 3e-09
 Identities = 20/211 (9%), Positives = 51/211 (24%), Gaps = 17/211 (8%)

Query: 24  ARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQ 83
           A      +        + I +++           +           AD+  L        
Sbjct: 143 AYGFPLKHGETDGYVMQAIHVYDMEGRKI-FAATTENSHDYAPAFDADSKNLYYLSYRSL 201

Query: 84  IFYWDVSTGRV-------IRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHST 136
               D                        N  K    S    +  YD +         + 
Sbjct: 202 DPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINV 261

Query: 137 E--PIQIIDSFQDSVMSVCLTKTE-----IIGGSVDGTVRTFDIRVGRELSDDLGQPVNC 189
           +    ++I   + S++   +           G    G +  +D++  +    ++   +  
Sbjct: 262 DPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV--TEVKNNLTD 319

Query: 190 ISMSNDGNCILASCLDSTLRLLDRSTGELLQ 220
           + +S D   ++    D  +        E  +
Sbjct: 320 LRLSADRKTVMVRKDDGKIYTFPLEKPEDER 350

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 51.0 bits (120), Expect = 4e-08
 Identities = 8/92 (8%), Positives = 25/92 (27%), Gaps = 4/92 (4%)

Query: 1   MSVSDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG 60
           ++V          L+                Y     +   +  ++              
Sbjct: 259 INVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR----KVTEVK 314

Query: 61  REVRDVHVTADNSKLISCGGDRQIFYWDVSTG 92
             + D+ ++AD   ++    D +I+ + +   
Sbjct: 315 NNLTDLRLSADRKTVMVRKDDGKIYTFPLEKP 346

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 46.4 bits (108), Expect = 2e-06
 Identities = 37/281 (13%), Positives = 68/281 (24%), Gaps = 33/281 (11%)

Query: 3   VSDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGRE 62
           + D    +A   + + G V A   + +G + +       I   +   G      +S    
Sbjct: 70  IYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAM 129

Query: 63  VRDV----------HVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNE 112
           + D           +              + I  +D+   ++        S   A  F+ 
Sbjct: 130 ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT-TENSHDYAPAFDA 188

Query: 113 YSSVVVSAGYDQSLRAWD-----CRSHSTEPIQIIDSFQDSVMSVCLT--KTEIIGGSVD 165
            S  +    Y     + D               +I     S     L         G  D
Sbjct: 189 DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYD 248

Query: 166 GTVRT---------FDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTG 216
                                   +      +             +     L   D  T 
Sbjct: 249 LNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR 308

Query: 217 ELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDL 257
           ++  E K ++     TD  L+     V    +DG IY + L
Sbjct: 309 KV-TEVKNNL-----TDLRLSADRKTVMVRKDDGKIYTFPL 343

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 36.0 bits (81), Expect = 0.004
 Identities = 5/42 (11%), Positives = 13/42 (30%)

Query: 14  LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKT 55
           +   +  +   R + D    +    D  I  +   +    +T
Sbjct: 310 VTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERT 351

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 52.0 bits (123), Expect = 2e-08
 Identities = 23/210 (10%), Positives = 57/210 (27%), Gaps = 11/210 (5%)

Query: 17  HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLI 76
            E   +         Y +    D ++ +  P            G+    + +   N K  
Sbjct: 133 LEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKM---DVKTGKYTVALPLRNWNRKGY 189

Query: 77  SCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHST 136
           S       +                       +F +      +A       + D ++  T
Sbjct: 190 SAPDVLYFWPHQSPRHE-------FSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKT 242

Query: 137 EPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSD-DLGQPVNCISMSND 195
              +  D  +     +   K       V   +  +D++  + +   +L     C++    
Sbjct: 243 HTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKK 302

Query: 196 GNCILASCLDSTLRLLDRSTGELLQEYKGH 225
           G+ +      + L + +  T E ++  K  
Sbjct: 303 GDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 332

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 47.8 bits (112), Expect = 5e-07
 Identities = 7/92 (7%), Positives = 22/92 (23%), Gaps = 2/92 (2%)

Query: 17  HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLI 76
                     +      +       +  ++  +   IK           V       KL 
Sbjct: 250 LTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLY 307

Query: 77  SCGGDRQIFYWDVSTGRVIRKFRGHESEVNAV 108
             G    +  ++  T   ++  +    +++  
Sbjct: 308 LGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTT 339

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 46.3 bits (108), Expect = 2e-06
 Identities = 18/257 (7%), Positives = 49/257 (19%), Gaps = 24/257 (9%)

Query: 26  FNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYK-SHGREVRDVHVTADNSKL-ISCGGDRQ 83
                 Y +       + + +       K+             +  DN    +       
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63

Query: 84  IFYWDVSTGRVIRKFR------GHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTE 137
           I+  D+ T +                 + +   +     V +                  
Sbjct: 64  IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPP- 122

Query: 138 PIQIIDSFQDSVMSVCLTKTEIIG-----GSVDGTVRTFDIRVGRELSDDLGQPVNCISM 192
            +++  +          T            + DG++         ++    G+    + +
Sbjct: 123 RLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG-PDIYKMDVKTGKYTVALPL 181

Query: 193 SNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYI 252
            N      ++                  +   H      T     +              
Sbjct: 182 RNWNRKGYSAPDVLYF---------WPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGY 232

Query: 253 YFWDLVDASVVAKFKAH 269
              DL       +  A 
Sbjct: 233 LSVDLKTGKTHTQEFAD 249

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 40.5 bits (93), Expect = 1e-04
 Identities = 22/253 (8%), Positives = 58/253 (22%), Gaps = 25/253 (9%)

Query: 21  VLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGG 80
           V A              K   + +++   G+  K  ++     R V++            
Sbjct: 103 VYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMRAADDGSLYVA 161

Query: 81  DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQ 140
              I+  DV TG+         +                    +   +            
Sbjct: 162 GPDIYKMDVKTGKYTVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSML---------- 210

Query: 141 IIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLGQPVNCI--SMSNDGNC 198
                  ++      K +     +     + D++ G+  + +           + +  + 
Sbjct: 211 ------YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP 264

Query: 199 ILASCLDSTLRLLDRSTGELLQEYK-GHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDL 257
                + + L   D    +L++     H                 +  G     +  ++ 
Sbjct: 265 NQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCV----AFDKKGDKLYLGGTFNDLAVFNP 320

Query: 258 VDASVVAKFKAHS 270
                V   K   
Sbjct: 321 DTLEKVKNIKLPG 333

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.5 bits (121), Expect = 2e-08
 Identities = 40/271 (14%), Positives = 73/271 (26%), Gaps = 27/271 (9%)

Query: 13  VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
            + GH   + A   N      +S   D  I  W+         ++ H   +  +      
Sbjct: 8   TISGHNKGITALTVN----PLISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDN---- 54

Query: 73  SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
               S   +     WD +            S+      N      V    D  L      
Sbjct: 55  ----SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFT 110

Query: 133 SHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLGQPVNCISM 192
               + +++        +S       +  G+     +  D+ V  +L   L    + IS+
Sbjct: 111 GDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISI 170

Query: 193 SNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSF---------KTDCCLTNSDAHV 243
           S     I A  +   + L D  + E+                     K        +  V
Sbjct: 171 SPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLV 230

Query: 244 TGGSEDGYIYFWDLVD-ASVVAKFKAHSLVV 273
             GS D  I+ + +     ++    AH   V
Sbjct: 231 ATGSLDTNIFIYSVKRPMKIIKALNAHKDGV 261

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.0 bits (117), Expect = 8e-08
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 2/87 (2%)

Query: 45  WNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVST-GRVIRKFRGHES 103
               R   I        E        +   + +   D  IF + V    ++I+    H+ 
Sbjct: 200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD 259

Query: 104 EVNAVKFNEYSSVVVSAGYDQSLRAWD 130
            VN + +    S +VS+G D  ++ W+
Sbjct: 260 GVNNLLWET-PSTLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.3 bits (110), Expect = 6e-07
 Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 23  AARFNGDGNYCLSCGKDRTIRLWNPHR-GIHIKTYKSHGREVRDVHVTADNSKLISCGGD 81
           A     + +   +   D  I +++  R    IK   +H   V ++     +  L+S G D
Sbjct: 220 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGAD 278

Query: 82  RQIFYWDV 89
             I  W+V
Sbjct: 279 ACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.5 bits (95), Expect = 5e-05
 Identities = 15/101 (14%), Positives = 35/101 (34%), Gaps = 9/101 (8%)

Query: 53  IKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNE 112
           +KT   H + +  + V    + LIS   D +I  W  S+       + H + + ++  ++
Sbjct: 6   LKTISGHNKGITALTV----NPLISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSK 56

Query: 113 YSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVC 153
                  +  D        +       ++  +  D   +V 
Sbjct: 57  AQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVL 97

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (86), Expect = 8e-04
 Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 1/40 (2%)

Query: 7   PRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWN 46
           P      L  H+  V    +       +S G D  I+ WN
Sbjct: 247 PMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.9 bits (83), Expect = 0.002
 Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 4/43 (9%)

Query: 91  TGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRS 133
              V++   GH   + A+      + ++S  YD  +  W   S
Sbjct: 2   HDEVLKTISGHNKGITALTV----NPLISGSYDGRIMEWSSSS 40

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.9 bits (112), Expect = 5e-07
 Identities = 13/98 (13%), Positives = 32/98 (32%), Gaps = 3/98 (3%)

Query: 13  VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
            +  H             +        R + + +   G  +  ++  G E+  ++V+ D 
Sbjct: 253 QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDE 311

Query: 73  SKLI--SCGGDRQIFYWDVSTGRVIRKFRGHESEVNAV 108
             L+     GD+ ++  D  +G  +R           +
Sbjct: 312 KPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVI 349

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.3 bits (108), Expect = 2e-06
 Identities = 21/224 (9%), Positives = 51/224 (22%), Gaps = 23/224 (10%)

Query: 1   MSVSDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG 60
           +++ D               +    +  DG+     G+D  +          +   K   
Sbjct: 117 VALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAG---TLVEDKPIQ 173

Query: 61  REVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSA 120
               + +   D   + +      +      T                    +        
Sbjct: 174 SWEAETYAQPDVLAVWNQHESSGVMATPFYT------------------ARKDIDPADPT 215

Query: 121 GYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELS 180
            Y   L   D  +      ++            +   +         + +FD+     + 
Sbjct: 216 AYRTGLLTMDLETGEMAMREVRIMDVFYFS-TAVNPAKTRAFGAYNVLESFDLEKNASIK 274

Query: 181 D-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYK 223
              L      +++S DG+ +        L   D  T E   +  
Sbjct: 275 RVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.4 bits (103), Expect = 7e-06
 Identities = 9/112 (8%), Positives = 24/112 (21%), Gaps = 8/112 (7%)

Query: 31  NYCLSCGKDRTIRLWNPHRGIHIKTYK--SHGREVRDVHVTADNSKL-ISCGGDRQIFYW 87
           +Y L+  +   + + +  +    K       G       V         +      +   
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 88  DVSTGRVIRKFRGHE-----SEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSH 134
           D+ TG  + +            +     +     +        L        
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQ 113

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.9 bits (86), Expect = 8e-04
 Identities = 6/66 (9%), Positives = 17/66 (25%)

Query: 1   MSVSDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG 60
           +   DL +  +        +  +   + DG+     G    +  ++             G
Sbjct: 262 LESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPG 321

Query: 61  REVRDV 66
                +
Sbjct: 322 NASMSL 327

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.4 bits (101), Expect = 2e-05
 Identities = 11/146 (7%), Positives = 28/146 (19%), Gaps = 22/146 (15%)

Query: 6   LPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRD 65
                A        +  AA+ N  G    +                       +    + 
Sbjct: 199 AGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKA 258

Query: 66  VH-------------------VTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVN 106
            +                   +                     S G+       +  + +
Sbjct: 259 DNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI-SNGHDSD 317

Query: 107 AVKF--NEYSSVVVSAGYDQSLRAWD 130
           A+    +  S    ++   + L  +D
Sbjct: 318 AIIAAQDGASDNYANSAGTEVLDIYD 343

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.8 bits (89), Expect = 5e-04
 Identities = 6/66 (9%), Positives = 17/66 (25%), Gaps = 3/66 (4%)

Query: 40  RTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLI--SCGGDRQIFYWDVSTGRVIRK 97
                     G       S+G +   +    D +     +  G   +  +D ++ +    
Sbjct: 294 ENTSSVTASVGQTSGPI-SNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSS 352

Query: 98  FRGHES 103
               + 
Sbjct: 353 VELDKG 358

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 15/102 (14%), Positives = 32/102 (31%), Gaps = 2/102 (1%)

Query: 35  SCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKL-ISCGGDRQIFYWDVSTGR 93
           +  +   I + +        T    G       ++ D +K+ ++      +   D +T  
Sbjct: 7   ANSESDNISVIDVTSNKVTATIP-VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65

Query: 94  VIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHS 135
           VI       S        +   V V+     +L   D  S++
Sbjct: 66  VIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT 107

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 39.5 bits (90), Expect = 3e-04
 Identities = 8/69 (11%), Positives = 19/69 (27%), Gaps = 2/69 (2%)

Query: 31  NYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKL-ISCGGDRQIFYWDV 89
                     T+ + +             G +   + VT D  K+ ++      +   D 
Sbjct: 215 YVTNVDKYFNTVSMIDTGTNKITARI-PVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDT 273

Query: 90  STGRVIRKF 98
           +T  +    
Sbjct: 274 ATNTITATM 282

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.0 bits (87), Expect = 8e-04
 Identities = 9/78 (11%), Positives = 27/78 (34%), Gaps = 1/78 (1%)

Query: 71  DNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWD 130
            N   ++     QI   D  + ++++      + V+  + +     ++  G D  +   D
Sbjct: 31  PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMID 89

Query: 131 CRSHSTEPIQIIDSFQDS 148
             +     +  I    ++
Sbjct: 90  LWAKEPTKVAEIKIGIEA 107

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} Length = 560

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

 Score = 37.6 bits (86), Expect = 0.001
 Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 1/69 (1%)

Query: 156 KTEIIGGSVDGTVRTFDIRVGREL-SDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRS 214
            T++    V G +  +D    +           N  ++S  GN +        +      
Sbjct: 428 ATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSAD 487

Query: 215 TGELLQEYK 223
            GE L +++
Sbjct: 488 KGEALWQFE 496

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 36.3 bits (83), Expect = 0.003
 Identities = 22/182 (12%), Positives = 46/182 (25%), Gaps = 21/182 (11%)

Query: 68  VTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLR 127
              +N   ++     QI   D ST  +        + V+  + +     +   G D  + 
Sbjct: 28  WDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA-VHISRLSASGRYLFVIGRDGKVN 86

Query: 128 AWDCRSHSTEPIQIIDSFQDS---VMSVCLT---KTEIIGGSVDGTVRTFDIRVGREL-- 179
             D        +  I    ++     S       K  I G          D         
Sbjct: 87  MIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKI 146

Query: 180 -----------SDDLGQPVNCISMSNDGNCILASCLDS-TLRLLDRSTGELLQEYKGHIC 227
                             V  I  S+     + +  ++  + L+D +    L+  +    
Sbjct: 147 QSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAE 206

Query: 228 KS 229
           + 
Sbjct: 207 RF 208

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	277
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.93
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.93
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.92
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.91
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.88
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.87
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.87
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.86
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.82
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.81
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.76
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.74
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.71
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.68
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.67
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.45
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.41
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.39
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.38
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.3
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.26
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.26
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.22
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.21
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.99
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.93
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.9
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.88
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.83
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.82
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.72
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.55
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.54
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.53
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.33
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.24
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.05
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.0
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.84
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.78
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.76
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.72
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.63
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.55
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.52
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.36
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.23
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.22
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.19
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.73
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.66
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.48
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.4
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.35
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.14
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.97
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.92
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	94.91
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	94.28
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	94.15
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	93.99
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	91.75
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	91.05
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	89.41
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	88.23
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	85.78
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	81.75

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=6.9e-42  Score=277.50  Aligned_cols=246  Identities=17%  Similarity=0.250  Sum_probs=206.4

Q ss_pred             ccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCee--EEEEeccCccEEEEEEcCCCCEEEEEeC--CCcEE
Q 023772           10 EANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIH--IKTYKSHGREVRDVHVTADNSKLISCGG--DRQIF   85 (277)
Q Consensus        10 ~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~t~s~--d~~v~   85 (277)
                      ....+.+|.++|++++|+|+|++|++|+.||+|++||+.++..  ...+..|..+|.+++|+|++++|++++.  +..++
T Consensus        50 ~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~  129 (311)
T d1nr0a1          50 DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGH  129 (311)
T ss_dssp             CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEE
T ss_pred             eeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccccccccc
Confidence            3456789999999999999999999999999999999987653  4568889999999999999999999986  45699


Q ss_pred             EEECCCCceeEEeecccCceeEEEEecCCCE-EEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEe
Q 023772           86 YWDVSTGRVIRKFRGHESEVNAVKFNEYSSV-VVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGG  162 (277)
Q Consensus        86 ~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g  162 (277)
                      +|+.++++...++.+|...|.+++|+|++++ +++|+.|+.|++||+++.  ........+...+..+.+++  ..++++
T Consensus       130 v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~--~~~~~~~~~~~~i~~v~~~p~~~~l~~~  207 (311)
T d1nr0a1         130 VFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF--KFKSTFGEHTKFVHSVRYNPDGSLFAST  207 (311)
T ss_dssp             EEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB--EEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             ccccccccccccccccccccccccccccceeeeccccccccccccccccc--ccccccccccccccccccCccccccccc
Confidence            9999999999999999999999999999875 889999999999999764  34455666777888888865  458999


Q ss_pred             ecCCcEEEEEccCCccccc---------CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeee
Q 023772          163 SVDGTVRTFDIRVGRELSD---------DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTD  233 (277)
Q Consensus       163 ~~d~~i~i~d~~~~~~~~~---------~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  233 (277)
                      +.|+.+++||++.+.....         .+...|++++|+|++++|++|+.||.|++||++++++++++..+.... ...
T Consensus       208 ~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~-~~~  286 (311)
T d1nr0a1         208 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIE-DQQ  286 (311)
T ss_dssp             ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGG-GCE
T ss_pred             cccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCcc-ceE
Confidence            9999999999987653321         234679999999999999999999999999999999999987664221 112


Q ss_pred             eEecCCCceEEeecCCCeEEEEECc
Q 023772          234 CCLTNSDAHVTGGSEDGYIYFWDLV  258 (277)
Q Consensus       234 ~~~~~~~~~l~sgs~d~~i~iwd~~  258 (277)
                      +.+.+++.++++++.||.|++||.+
T Consensus       287 ~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         287 LGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEEECSSCEEEEETTCCEEEEETT
T ss_pred             EEEEecCCEEEEEECCCEEEEEeCC
Confidence            2344456679999999999999974

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-41  Score=273.02  Aligned_cols=263  Identities=25%  Similarity=0.400  Sum_probs=231.7

Q ss_pred             ccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 023772           10 EANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDV   89 (277)
Q Consensus        10 ~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~   89 (277)
                      +...|+||+++|++++|+|++++|+|||.|++|+|||+.+++.+.++++|...|.++++++++.++++++.++.+..|+.
T Consensus         9 ~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (317)
T d1vyhc1           9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF   88 (317)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred             ccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccc
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEeecCCc
Q 023772           90 STGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGT  167 (277)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~d~~  167 (277)
                      ...+....+..|...+.++.++++++.+++++.|+.+++||+++..  ....+..+...+..+.+++  ..+++++.|+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  166 (317)
T d1vyhc1          89 QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY--CVKTFTGHREWVRMVRPNQDGTLIASCSNDQT  166 (317)
T ss_dssp             TSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccccccccccccccceeeeccCCCceEEeeccCcceeEeecccce--eeeEEccCCCcceeeecccCCCEEEEEeCCCe
Confidence            9998888899999999999999999999999999999999997653  3445566667777777664  55999999999


Q ss_pred             EEEEEccCCccccc--CCCCCeeEEEEeCC--------------------CCEEEEEecCCeEEEEECCCCceEEEEecc
Q 023772          168 VRTFDIRVGRELSD--DLGQPVNCISMSND--------------------GNCILASCLDSTLRLLDRSTGELLQEYKGH  225 (277)
Q Consensus       168 i~i~d~~~~~~~~~--~~~~~v~~~~~s~~--------------------~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~  225 (277)
                      +++|+++.++....  .+...+.++.|+|+                    +.++++++.|+.|++||.++++++..+.+|
T Consensus       167 v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~  246 (317)
T d1vyhc1         167 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH  246 (317)
T ss_dssp             EEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             EEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCC
Confidence            99999987765432  33456777777654                    457899999999999999999999999988


Q ss_pred             ccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772          226 ICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL  276 (277)
Q Consensus       226 ~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  276 (277)
                      ..  ....++++|++++|++|+.||.|++||+.+++++.++++|...|..+
T Consensus       247 ~~--~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~  295 (317)
T d1vyhc1         247 DN--WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL  295 (317)
T ss_dssp             SS--CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEE
T ss_pred             CC--CEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEE
Confidence            54  34567789999999999999999999999999999999999888764

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.9e-41  Score=279.29  Aligned_cols=256  Identities=23%  Similarity=0.417  Sum_probs=209.0

Q ss_pred             eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEe------------------ccCccEEEEEEcCCCCEEE
Q 023772           15 KGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYK------------------SHGREVRDVHVTADNSKLI   76 (277)
Q Consensus        15 ~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~------------------~h~~~v~~~~~~~~~~~l~   76 (277)
                      .+|+++|++++|+|+|++|++|+ |++|+|||+.+++.+..+.                  .|...|++++|+|++++|+
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~  137 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  137 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcce
Confidence            37999999999999999999986 8999999999888776654                  4566799999999999999


Q ss_pred             EEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEe--
Q 023772           77 SCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCL--  154 (277)
Q Consensus        77 t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--  154 (277)
                      +|+.|+.|++||...++.+..+.+|...|.++.+++++..+++++.++.+++||.+....  ...... ......+.+  
T Consensus       138 s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~~~~~-~~~~~~~~~~~  214 (388)
T d1erja_         138 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC--SLTLSI-EDGVTTVAVSP  214 (388)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE--EEEEEC-SSCEEEEEECS
T ss_pred             ecccccccccccccccccccccccccccccccccccccccccccccceeeeeeecccccc--cccccc-ccccccccccC
Confidence            999999999999999999999999999999999999999999999999999999876432  222222 223333333  


Q ss_pred             -cCCeEEEeecCCcEEEEEccCCccccc---------CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceE-----
Q 023772          155 -TKTEIIGGSVDGTVRTFDIRVGRELSD---------DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELL-----  219 (277)
Q Consensus       155 -~~~~~~~g~~d~~i~i~d~~~~~~~~~---------~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~-----  219 (277)
                       ++..+++|+.|+.|++||.+++.....         .+..+|.+++|+|++++|++++.|+.|++||+++++..     
T Consensus       215 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  294 (388)
T d1erja_         215 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT  294 (388)
T ss_dssp             TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----------
T ss_pred             CCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccccc
Confidence             345699999999999999987654321         23468999999999999999999999999999765432     


Q ss_pred             -------EEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772          220 -------QEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL  276 (277)
Q Consensus       220 -------~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  276 (277)
                             .....|.  .....++++|++.+|++|+.||.|++||+.+++++.++++|...|..+
T Consensus       295 ~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~  356 (388)
T d1erja_         295 PNSGTCEVTYIGHK--DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV  356 (388)
T ss_dssp             ----CEEEEEECCS--SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             ccccceeeeccccc--ceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEE
Confidence                   2223332  345667889999999999999999999999999999999999887653

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.7e-39  Score=264.47  Aligned_cols=264  Identities=20%  Similarity=0.304  Sum_probs=218.4

Q ss_pred             ccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 023772           10 EANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDV   89 (277)
Q Consensus        10 ~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~   89 (277)
                      ...+|+||.++|++++|+|++++|+|||.||+|+|||+.+++.+..+..|..+|.+++|+|+++++++|+.|+.+++|+.
T Consensus        47 ~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~  126 (340)
T d1tbga_          47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL  126 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEES
T ss_pred             eeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccc
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCC----ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec--CCeEEEee
Q 023772           90 STG----RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT--KTEIIGGS  163 (277)
Q Consensus        90 ~~~----~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~  163 (277)
                      ...    .....+.+|.......... ....+.....|.....+.......  ..........+......  ...+++|.
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (340)
T d1tbga_         127 KTREGNVRVSRELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIETGQQ--TTTFTGHTGDVMSLSLAPDTRLFVSGA  203 (340)
T ss_dssp             SSSCSCCCEEEEECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTTTEE--EEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             cccccccccceecccccccccccccc-cccccccccccccccccccccccc--cccccccceeEeeeccccccceeEEee
Confidence            654    3455667777766654444 456777888999999988764322  22223333444444443  45588999


Q ss_pred             cCCcEEEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCc
Q 023772          164 VDGTVRTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDA  241 (277)
Q Consensus       164 ~d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (277)
                      .|+.+++||+++++.+..  .+..+|++++|+|++++|++|+.|+.|++||++..+.+..+...........++++|++.
T Consensus       204 ~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  283 (340)
T d1tbga_         204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR  283 (340)
T ss_dssp             TTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSC
T ss_pred             cCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCC
Confidence            999999999998876543  356789999999999999999999999999999988887776544444456678999999


Q ss_pred             eEEeecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772          242 HVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL  276 (277)
Q Consensus       242 ~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  276 (277)
                      +|++|+.||.|++||+.+++++.++++|..+|..+
T Consensus       284 ~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l  318 (340)
T d1tbga_         284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL  318 (340)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             EEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEE
Confidence            99999999999999999999999999999988765

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-39  Score=263.98  Aligned_cols=252  Identities=17%  Similarity=0.284  Sum_probs=211.9

Q ss_pred             ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCe-----eEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772           16 GHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI-----HIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        16 ~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~   90 (277)
                      +|..+|.+++|+|+|++|+||+ ||.|+|||+.++.     .......|.+.|.+++|+|++++|++|+.|++|++||+.
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~  127 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA  127 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccc
Confidence            7999999999999999999987 7999999987542     223345789999999999999999999999999999987


Q ss_pred             C--CceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEeecCC
Q 023772           91 T--GRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDG  166 (277)
Q Consensus        91 ~--~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~d~  166 (277)
                      .  .+....+..|...+..+.++|++.++++++.|+.|++|++.+..  .......+...+.++.+++  ..+++++.|+
T Consensus       128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~--~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~  205 (337)
T d1gxra_         128 APTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT--LVRQFQGHTDGASCIDISNDGTKLWTGGLDN  205 (337)
T ss_dssp             CC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccc
Confidence            4  35667788899999999999999999999999999999987643  3444556677788887764  4689999999


Q ss_pred             cEEEEEccCCccccc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEe
Q 023772          167 TVRTFDIRVGRELSD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTG  245 (277)
Q Consensus       167 ~i~i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  245 (277)
                      .+++||+++++.+.. .+..++.+++|+|++++|++++.|+.+++||+++++.... ..|..  ....++++|+++++++
T Consensus       206 ~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~--~i~~v~~s~~g~~l~s  282 (337)
T d1gxra_         206 TVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL-HLHES--CVLSLKFAYCGKWFVS  282 (337)
T ss_dssp             EEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE-CCCSS--CEEEEEECTTSSEEEE
T ss_pred             cccccccccceeecccccccceEEEEEcccccccceeccccccccccccccccccc-ccccc--ccceEEECCCCCEEEE
Confidence            999999998876543 3567899999999999999999999999999998877643 44533  3466788999999999


Q ss_pred             ecCCCeEEEEECcCccceeeeccCcceeE
Q 023772          246 GSEDGYIYFWDLVDASVVAKFKAHSLVVK  274 (277)
Q Consensus       246 gs~d~~i~iwd~~~~~~~~~~~~h~~~v~  274 (277)
                      |+.||.|++||+.+++.+..++. ...|.
T Consensus       283 ~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~  310 (337)
T d1gxra_         283 TGKDNLLNAWRTPYGASIFQSKE-SSSVL  310 (337)
T ss_dssp             EETTSEEEEEETTTCCEEEEEEC-SSCEE
T ss_pred             EeCCCeEEEEECCCCCEEEEccC-CCCEE
Confidence            99999999999999999887764 44444

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.6e-39  Score=262.07  Aligned_cols=238  Identities=17%  Similarity=0.296  Sum_probs=207.7

Q ss_pred             eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCC--CeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 023772           14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHR--GIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVST   91 (277)
Q Consensus        14 l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~   91 (277)
                      ..+|.++|.+++|+|+|++|++|+.|++|++||+..  ++....+..|...+..+.|+|++.++++++.|+.+++||+.+
T Consensus        93 ~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~  172 (337)
T d1gxra_          93 CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN  172 (337)
T ss_dssp             CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            457999999999999999999999999999999764  456677888999999999999999999999999999999999


Q ss_pred             CceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEeecCCcEE
Q 023772           92 GRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVR  169 (277)
Q Consensus        92 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~d~~i~  169 (277)
                      +++......|..+|.+++|+++++.+++++.|+.+++||+++..  .+.. ..+...+.++.+++  ..+++|+.|+.++
T Consensus       173 ~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~--~~~~-~~~~~~i~~l~~~~~~~~l~~~~~d~~i~  249 (337)
T d1gxra_         173 QTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR--QLQQ-HDFTSQIFSLGYCPTGEWLAVGMESSNVE  249 (337)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE--EEEE-EECSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccce--eecc-cccccceEEEEEcccccccceeccccccc
Confidence            99999999999999999999999999999999999999997643  2222 34567788877765  4589999999999


Q ss_pred             EEEccCCccccc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecC
Q 023772          170 TFDIRVGRELSD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSE  248 (277)
Q Consensus       170 i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~  248 (277)
                      +||++.++.... .+...|++++|+|++++|++++.|+.|++||..+++.+..+..+   ..+..++++|++++|++|+.
T Consensus       250 i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~s~d~~~l~t~s~  326 (337)
T d1gxra_         250 VLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISVDDKYIVTGSG  326 (337)
T ss_dssp             EEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS---SCEEEEEECTTSCEEEEEET
T ss_pred             cccccccccccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCC---CCEEEEEEeCCCCEEEEEeC
Confidence            999988765433 45678999999999999999999999999999999988776533   23466789999999999999


Q ss_pred             CCeEEEEEC
Q 023772          249 DGYIYFWDL  257 (277)
Q Consensus       249 d~~i~iwd~  257 (277)
                      ||.|+|||+
T Consensus       327 D~~I~vWdl  335 (337)
T d1gxra_         327 DKKATVYEV  335 (337)
T ss_dssp             TSCEEEEEE
T ss_pred             CCeEEEEEE
Confidence            999999996

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.5e-39  Score=261.50  Aligned_cols=253  Identities=14%  Similarity=0.163  Sum_probs=213.9

Q ss_pred             eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 023772           15 KGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRV   94 (277)
Q Consensus        15 ~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~   94 (277)
                      ..+++.+..++++|+|+.|+.++ ++.+.+||+.++...+.+.+|...|++++|+|++++|++|+.|++|++||+.+++.
T Consensus        14 ~~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~   92 (311)
T d1nr0a1          14 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH   92 (311)
T ss_dssp             CCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC
T ss_pred             CCCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccc
Confidence            34666677889999999999875 57899999999988999999999999999999999999999999999999988764


Q ss_pred             e--EEeecccCceeEEEEecCCCEEEEEeC--CCcEEEEeCccCCCcceEeeccccCcEEEEEecCC---eEEEeecCCc
Q 023772           95 I--RKFRGHESEVNAVKFNEYSSVVVSAGY--DQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT---EIIGGSVDGT  167 (277)
Q Consensus        95 ~--~~~~~h~~~v~~i~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~d~~  167 (277)
                      .  ..+..|..+|.+++|+|+++++++++.  +..+++|+.....  ....+..+...+..+.++++   .+++|+.|+.
T Consensus        93 ~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~--~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~  170 (311)
T d1nr0a1          93 ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT--SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNT  170 (311)
T ss_dssp             CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC--BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSC
T ss_pred             ccccccccccCcccccccccccccccccccccccccccccccccc--ccccccccccccccccccccceeeecccccccc
Confidence            3  567889999999999999999999986  4569999987653  33445667788888888653   3788999999


Q ss_pred             EEEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccc-----cceeeeeeEecCCC
Q 023772          168 VRTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHI-----CKSFKTDCCLTNSD  240 (277)
Q Consensus       168 i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~  240 (277)
                      |++||+++++....  .+..+|+++.|+|++++|++++.|+.+++||..+++.+..+....     ....+..++++|++
T Consensus       171 i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~  250 (311)
T d1nr0a1         171 VAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG  250 (311)
T ss_dssp             EEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS
T ss_pred             cccccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCC
Confidence            99999998765543  345789999999999999999999999999999988877765321     12234567899999


Q ss_pred             ceEEeecCCCeEEEEECcCccceeeeccCc
Q 023772          241 AHVTGGSEDGYIYFWDLVDASVVAKFKAHS  270 (277)
Q Consensus       241 ~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~  270 (277)
                      .+|++|+.||.|++||++++++++++..|.
T Consensus       251 ~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~  280 (311)
T d1nr0a1         251 TKIASASADKTIKIWNVATLKVEKTIPVGT  280 (311)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEEECCC
Confidence            999999999999999999999999998764

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.8e-39  Score=259.04  Aligned_cols=246  Identities=15%  Similarity=0.226  Sum_probs=191.2

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEe-ccCccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYK-SHGREVRDVHVTADNSKLISCGGDRQIFYWDV   89 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~   89 (277)
                      .++++||.++|++++|+|+|++|+||+.|++|++||+.+++..+.+. .|...|++++|+|+++ +++++.|+.+++|+.
T Consensus         5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~~   83 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVPA   83 (299)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEECS
T ss_pred             ceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEecc
Confidence            56789999999999999999999999999999999999999888874 6899999999999986 566778999999997


Q ss_pred             CCCce-----e--------EE--e-------------------------ecccCceeEEEEecCCCEEEEEeCCCcEEEE
Q 023772           90 STGRV-----I--------RK--F-------------------------RGHESEVNAVKFNEYSSVVVSAGYDQSLRAW  129 (277)
Q Consensus        90 ~~~~~-----~--------~~--~-------------------------~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iw  129 (277)
                      .....     .        ..  +                         ......+.+++++|+++++++++.|+.|++|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~  163 (299)
T d1nr0a2          84 GGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVY  163 (299)
T ss_dssp             SSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred             CCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            43210     0        00  0                         0123456778889999999999999999999


Q ss_pred             eCccCCCcceEeeccccCcEEEEEecC--CeEEEeecCCcEEEEEccCCccccc-----CCCCCeeEEEEeCCCCEEEEE
Q 023772          130 DCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVGRELSD-----DLGQPVNCISMSNDGNCILAS  202 (277)
Q Consensus       130 d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~d~~i~i~d~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~  202 (277)
                      |++....... ....+...+.++.+++  ..+++++.|+.|++||+.++.....     .+..+|++++|+|++++|++|
T Consensus       164 d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sg  242 (299)
T d1nr0a2         164 KLSGASVSEV-KTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG  242 (299)
T ss_dssp             EEETTEEEEE-EEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEE
T ss_pred             cccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceEEE
Confidence            9876543222 2334667788888765  4589999999999999987654432     245689999999999999999


Q ss_pred             ecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECc
Q 023772          203 CLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLV  258 (277)
Q Consensus       203 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~  258 (277)
                      +.|+.|++||+++++....+..+........+++++++.+|++|+.|+.|++||+.
T Consensus       243 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         243 SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             ETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred             cCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEeCCCEEEEEecc
Confidence            99999999999876544333222111222334456678899999999999999984

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.3e-38  Score=261.69  Aligned_cols=242  Identities=14%  Similarity=0.208  Sum_probs=199.5

Q ss_pred             cCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCe--eEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 023772           17 HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI--HIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRV   94 (277)
Q Consensus        17 H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~   94 (277)
                      +.+||+|++|+|+|++|++|+.|+.|+|||..+++  ++..+++|.++|.+++|+|++++|++|+.|++|++||+.++..
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~   85 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW   85 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence            45889999999999999999999999999987765  5678899999999999999999999999999999999987654


Q ss_pred             --eEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcce--EeeccccCcEEEEEecC--CeEEEeecCCcE
Q 023772           95 --IRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPI--QIIDSFQDSVMSVCLTK--TEIIGGSVDGTV  168 (277)
Q Consensus        95 --~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~g~~d~~i  168 (277)
                        ...+.+|...|.+++|+|+++.+++++.|+++++|++........  .....+...+.++.++|  ..+++|+.|+++
T Consensus        86 ~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v  165 (371)
T d1k8kc_          86 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC  165 (371)
T ss_dssp             EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEE
Confidence              445678899999999999999999999999999999875443222  22345667788888765  458999999999


Q ss_pred             EEEEccCCccc------------------c--cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccc
Q 023772          169 RTFDIRVGREL------------------S--DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICK  228 (277)
Q Consensus       169 ~i~d~~~~~~~------------------~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~  228 (277)
                      ++||+......                  .  ..+...+.+++|+|+|++|++++.|+.|++||+.+++.+..+..|...
T Consensus       166 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  245 (371)
T d1k8kc_         166 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLP  245 (371)
T ss_dssp             EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCC
T ss_pred             EEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeeccccc
Confidence            99998643210                  0  122346899999999999999999999999999999999999888543


Q ss_pred             eeeeeeEecCCCceEEeecCCCeEEEEECcCcc
Q 023772          229 SFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDAS  261 (277)
Q Consensus       229 ~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~  261 (277)
                        ...++++|++.++++|+ |+.+++|+.....
T Consensus       246 --v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~  275 (371)
T d1k8kc_         246 --LLAVTFITESSLVAAGH-DCFPVLFTYDSAA  275 (371)
T ss_dssp             --EEEEEEEETTEEEEEET-TSSCEEEEEETTT
T ss_pred             --ceeeeecCCCCEEEEEc-CCceEEEEeeCCC
Confidence              45677899999988876 6777776655543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-37  Score=249.66  Aligned_cols=260  Identities=25%  Similarity=0.418  Sum_probs=200.9

Q ss_pred             cccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023772            9 TEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWD   88 (277)
Q Consensus         9 ~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd   88 (277)
                      +...+|+||+++|.+ +++++|++|+|||.||+|+|||+.++++++++.+|...|.+++|+++  +|++++.|+.+++|+
T Consensus         7 ~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~   83 (342)
T d2ovrb2           7 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWN   83 (342)
T ss_dssp             CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEE
T ss_pred             CcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccc
Confidence            445679999999865 46778999999999999999999999999999999999999999864  899999999999999


Q ss_pred             CCCCceeEEeecccCceeE--------------------------------------EEEecCCCEEEEEeCCCcEEEEe
Q 023772           89 VSTGRVIRKFRGHESEVNA--------------------------------------VKFNEYSSVVVSAGYDQSLRAWD  130 (277)
Q Consensus        89 ~~~~~~~~~~~~h~~~v~~--------------------------------------i~~~~~~~~l~s~~~d~~i~iwd  130 (277)
                      ............+...+..                                      ....+....+++++.|+.+++||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d  163 (342)
T d2ovrb2          84 AETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWD  163 (342)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEE
T ss_pred             cccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEee
Confidence            8765543333222222111                                      12223445678888889999998


Q ss_pred             CccCCCcceEeeccccCcEEEEEecCCeEEEeecCCcEEEEEccCCcccccC--CCCCeeEEEEeCCCCEEEEEecCCeE
Q 023772          131 CRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDD--LGQPVNCISMSNDGNCILASCLDSTL  208 (277)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i  208 (277)
                      .+..  .....+..+...+..+.+++..+++|+.||.|++||++.++.+...  +...+.+++++  +++|++++.|+.|
T Consensus       164 ~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i  239 (342)
T d2ovrb2         164 PETE--TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTV  239 (342)
T ss_dssp             GGGT--EEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCE
T ss_pred             cccc--eeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCCEE
Confidence            7653  3345566677778888888999999999999999999988765443  34566666665  5699999999999


Q ss_pred             EEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeec-----cCcceeEee
Q 023772          209 RLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFK-----AHSLVVKLL  276 (277)
Q Consensus       209 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~-----~h~~~v~~~  276 (277)
                      ++||....+....+..+..... ...++.+++.++++|+.||.|++||++++++++++.     +|..+|..+
T Consensus       240 ~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v  311 (342)
T d2ovrb2         240 KIWDIKTGQCLQTLQGPNKHQS-AVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRI  311 (342)
T ss_dssp             EEEETTTCCEEEEECSTTSCSS-CEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEE
T ss_pred             EEEecccccccccccccceeee-ceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEE
Confidence            9999999888888776543222 223445567899999999999999999999998874     466666543

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3e-37  Score=256.27  Aligned_cols=245  Identities=20%  Similarity=0.330  Sum_probs=201.1

Q ss_pred             eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 023772           14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGR   93 (277)
Q Consensus        14 l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~   93 (277)
                      ..+|...|++++|+|+|++|++|+.|+.|++||..+++.+..+.+|...|.++.+++++..+++++.++.+++||..+..
T Consensus       117 ~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  196 (388)
T d1erja_         117 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ  196 (388)
T ss_dssp             --CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             ccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccc
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             eeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcce-----EeeccccCcEEEEEecC--CeEEEeecCC
Q 023772           94 VIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPI-----QIIDSFQDSVMSVCLTK--TEIIGGSVDG  166 (277)
Q Consensus        94 ~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~--~~~~~g~~d~  166 (277)
                      .......+...+....+.+++++|++++.|+.|++||.+.......     .....+...+.++.+++  ..+++|+.|+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~  276 (388)
T d1erja_         197 CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR  276 (388)
T ss_dssp             EEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCC
Confidence            8877776666665555556789999999999999999876432211     11234566788888765  4699999999


Q ss_pred             cEEEEEccCCcccc--------------cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeee
Q 023772          167 TVRTFDIRVGRELS--------------DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKT  232 (277)
Q Consensus       167 ~i~i~d~~~~~~~~--------------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~  232 (277)
                      .|++||++......              ..+...|.+++|+|++++|++|+.||.|++||+++++++..+.+|.......
T Consensus       277 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~  356 (388)
T d1erja_         277 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV  356 (388)
T ss_dssp             EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             cEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEE
Confidence            99999997654321              1234679999999999999999999999999999999999999997654433


Q ss_pred             ee----EecCCCceEEeecCCCeEEEEECc
Q 023772          233 DC----CLTNSDAHVTGGSEDGYIYFWDLV  258 (277)
Q Consensus       233 ~~----~~~~~~~~l~sgs~d~~i~iwd~~  258 (277)
                      ..    .++|++.+|++|+.||+|++||++
T Consensus       357 ~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         357 AVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            22    357899999999999999999985

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.4e-36  Score=240.93  Aligned_cols=244  Identities=25%  Similarity=0.414  Sum_probs=214.4

Q ss_pred             cccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023772            9 TEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWD   88 (277)
Q Consensus         9 ~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd   88 (277)
                      .....+.+|.++|.+++|++++.++++++.++.+.+|+....+....+..|...+.++.++++++.+++++.|+.+++||
T Consensus        50 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  129 (317)
T d1vyhc1          50 DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE  129 (317)
T ss_dssp             CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             CEEEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEee
Confidence            33556789999999999999999999999999999999999888888899999999999999999999999999999999


Q ss_pred             CCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC------------
Q 023772           89 VSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK------------  156 (277)
Q Consensus        89 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~------------  156 (277)
                      +++++.+..+..|...+.++.++++++++++++.|+.|++|+.....  ....+..+...+..+.+.+            
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  207 (317)
T d1vyhc1         130 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE--CKAELREHRHVVECISWAPESSYSSISEATG  207 (317)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECCSCGGGGGGGCCS
T ss_pred             cccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccce--eeEEEecCCCCceEEEEeeccccceeecccc
Confidence            99999999999999999999999999999999999999999987643  3334444555555554432            


Q ss_pred             ----------CeEEEeecCCcEEEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEec
Q 023772          157 ----------TEIIGGSVDGTVRTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKG  224 (277)
Q Consensus       157 ----------~~~~~g~~d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~  224 (277)
                                ..+++|+.|+.|++||+++++.+..  .+..+|.+++|+|++++|++|+.||.|++||+++++++..+.+
T Consensus       208 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  287 (317)
T d1vyhc1         208 SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA  287 (317)
T ss_dssp             CC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEEC
T ss_pred             ceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcC
Confidence                      3478899999999999998876543  3567899999999999999999999999999999999999999


Q ss_pred             cccceeeeeeEecCCCceEEeecCCCeEEEEE
Q 023772          225 HICKSFKTDCCLTNSDAHVTGGSEDGYIYFWD  256 (277)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd  256 (277)
                      |...  +..++++|++.+|++|+.||+|++||
T Consensus       288 h~~~--V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         288 HEHF--VTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CSSC--EEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCCC--EEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            8644  46677899999999999999999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-35  Score=242.43  Aligned_cols=247  Identities=23%  Similarity=0.363  Sum_probs=198.7

Q ss_pred             ccceeeccCCcE-EEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023772           10 EANVLKGHEGAV-LAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWD   88 (277)
Q Consensus        10 ~~~~l~~H~~~V-~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd   88 (277)
                      +..+|+||.+.| +|+.|  ++++|+||+.|++|+|||+.+++++.++++|.++|++++|+++ .+|++|+.|++|++|+
T Consensus         4 ~~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~   80 (355)
T d1nexb2           4 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD   80 (355)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEE
T ss_pred             CcEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccc
Confidence            356799999886 55555  5789999999999999999999999999999999999999985 6899999999999999


Q ss_pred             CCCCceeEEeecccC--ceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCc---------------------ceEeeccc
Q 023772           89 VSTGRVIRKFRGHES--EVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTE---------------------PIQIIDSF  145 (277)
Q Consensus        89 ~~~~~~~~~~~~h~~--~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~---------------------~~~~~~~~  145 (277)
                      ....+.......+..  ......+.+++..+++++.|+.|++||++.....                     .......+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
T d1nexb2          81 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH  160 (355)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECC
T ss_pred             ccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeec
Confidence            998887766554433  3445666788899999999999999998653211                     01112233


Q ss_pred             cCcEEEEEecCCeEEEeecCCcEEEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEe
Q 023772          146 QDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYK  223 (277)
Q Consensus       146 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~  223 (277)
                      ...+.....+++.++.+..|+.+++||+++++.+..  .....+.++.|+|++.++++++.|+.|++||.+++.++..+.
T Consensus       161 ~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~  240 (355)
T d1nexb2         161 MASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ  240 (355)
T ss_dssp             SSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             cccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccccc
Confidence            445566667788899999999999999998776543  344678899999999999999999999999999999999999


Q ss_pred             ccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccce
Q 023772          224 GHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVV  263 (277)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~  263 (277)
                      +|....  ..+.+  +++++++|+.||.|++||+.++...
T Consensus       241 ~h~~~v--~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~  276 (355)
T d1nexb2         241 GHTALV--GLLRL--SDKFLVSAAADGSIRGWDANDYSRK  276 (355)
T ss_dssp             CCSSCC--CEEEE--CSSEEEEECTTSEEEEEETTTCCEE
T ss_pred             cccccc--ccccc--ccceeeeeeccccccccccccccee
Confidence            886443  33333  4679999999999999999987644

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4e-36  Score=244.77  Aligned_cols=246  Identities=17%  Similarity=0.225  Sum_probs=192.4

Q ss_pred             cceeeccC-CcEEEEEEeC--CCCEEEEEeCCCcEEEEcCCCCe--------eEEEEeccCccEEEEEEcCCCCEEEEEe
Q 023772           11 ANVLKGHE-GAVLAARFNG--DGNYCLSCGKDRTIRLWNPHRGI--------HIKTYKSHGREVRDVHVTADNSKLISCG   79 (277)
Q Consensus        11 ~~~l~~H~-~~V~~~~~~~--~~~~l~s~s~d~~v~iwd~~~~~--------~~~~~~~h~~~v~~~~~~~~~~~l~t~s   79 (277)
                      ...+.+|. .+|++++|+|  +|.+|+||+.||+|+|||+..++        ....+..|.++|.+++|++++++|++++
T Consensus        55 ~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  134 (325)
T d1pgua1          55 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG  134 (325)
T ss_dssp             EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             eEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceee
Confidence            44567774 6899999997  67899999999999999975432        2234567889999999999999998776


Q ss_pred             C--CCcEEEEECCCCceeEEeecccCceeEEEEecCCCE-EEEEeCCCcEEEEeCccCCCcc-eEeeccccCcEEEEEec
Q 023772           80 G--DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSV-VVSAGYDQSLRAWDCRSHSTEP-IQIIDSFQDSVMSVCLT  155 (277)
Q Consensus        80 ~--d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~  155 (277)
                      .  ++.+++|+.++++++..+.+|..+|.++.|+|++.. +++++.|+.+++||........ ......+...+.++.++
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~  214 (325)
T d1pgua1         135 EGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFS  214 (325)
T ss_dssp             CCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEEC
T ss_pred             ccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeec
Confidence            4  678999999999999999999999999999998765 7889999999999986543221 11234456678888887


Q ss_pred             C---CeEEEeecCCcEEEEEccCCcccccC--CCCCeeEEEEe---CCCCEEEEEecCCeEEEEECCCCceEEEEecccc
Q 023772          156 K---TEIIGGSVDGTVRTFDIRVGRELSDD--LGQPVNCISMS---NDGNCILASCLDSTLRLLDRSTGELLQEYKGHIC  227 (277)
Q Consensus       156 ~---~~~~~g~~d~~i~i~d~~~~~~~~~~--~~~~v~~~~~s---~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~  227 (277)
                      |   ..+++++.|+.|++||+++++.+...  +..++..+.|+   |+|++|++++.|+.|++||++++++++.+..+..
T Consensus       215 pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~  294 (325)
T d1pgua1         215 PDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ  294 (325)
T ss_dssp             STTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTT
T ss_pred             cccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCC
Confidence            5   35889999999999999988755432  33344444444   6889999999999999999999999998887643


Q ss_pred             ce--eeeeeEecCCCceEEeecCCCeEEEEEC
Q 023772          228 KS--FKTDCCLTNSDAHVTGGSEDGYIYFWDL  257 (277)
Q Consensus       228 ~~--~~~~~~~~~~~~~l~sgs~d~~i~iwd~  257 (277)
                      ..  ....+.+. .+.++++|+.||.|++||+
T Consensus       295 ~~~~~~~~~~~~-~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         295 QLGNQQVGVVAT-GNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             CGGGCEEEEEEE-ETTEEEEEETTSCEEEEET
T ss_pred             cccCeEEEEEEC-CCCEEEEEECCCEEEEEEC
Confidence            32  22333333 3457889999999999996

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.7e-35  Score=243.20  Aligned_cols=202  Identities=19%  Similarity=0.202  Sum_probs=164.4

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCee--EEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIH--IKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWD   88 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd   88 (277)
                      ...|++|.++|++++|+|++++|+|||.|++|+|||+.++..  ...+..|...|.+++|+|+++.|++++.|+++++|+
T Consensus        44 ~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~  123 (371)
T d1k8kc_          44 VHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICY  123 (371)
T ss_dssp             EEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEE
T ss_pred             EEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeee
Confidence            456789999999999999999999999999999999887654  445567889999999999999999999999999999


Q ss_pred             CCCCce----eEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCC----------------cceEeeccccCc
Q 023772           89 VSTGRV----IRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHST----------------EPIQIIDSFQDS  148 (277)
Q Consensus        89 ~~~~~~----~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~----------------~~~~~~~~~~~~  148 (277)
                      .+....    ......|...|.+++|+|++++|++|+.|+++++|+......                ........+...
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (371)
T d1k8kc_         124 FEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW  203 (371)
T ss_dssp             EETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC
T ss_pred             eecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCc
Confidence            876543    334557899999999999999999999999999999764321                112233456667


Q ss_pred             EEEEEecC--CeEEEeecCCcEEEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEEC
Q 023772          149 VMSVCLTK--TEIIGGSVDGTVRTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDR  213 (277)
Q Consensus       149 ~~~~~~~~--~~~~~g~~d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~  213 (277)
                      +..+.+++  +.+++++.|+.|++||+..++.+..  .+..+|.+++|+|++++|++ +.|+.+++|+.
T Consensus       204 v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~-g~d~~~~~~~~  271 (371)
T d1k8kc_         204 VHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAA-GHDCFPVLFTY  271 (371)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEE-ETTSSCEEEEE
T ss_pred             EEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEE-EcCCceEEEEe
Confidence            77777765  4599999999999999988776543  34568999999999976665 45777777654

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-34  Score=229.14  Aligned_cols=253  Identities=21%  Similarity=0.330  Sum_probs=204.0

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS   90 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~   90 (277)
                      .....+|...|+|+.  ++|++|+|||.||+|||||+.++++++++++|.++|++++|  ++++|++|+.|+.|++|++.
T Consensus         8 i~~~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~   83 (293)
T d1p22a2           8 IHCRSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN   83 (293)
T ss_dssp             EECCCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred             EeccCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccc
Confidence            344567889999875  57899999999999999999999999999999999999887  56899999999999999999


Q ss_pred             CCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCc-ceEeeccccCcEEEEEecCCeEEEeecCCcEE
Q 023772           91 TGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTE-PIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVR  169 (277)
Q Consensus        91 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~  169 (277)
                      .+........+....  ....+....++++..++.+.+|+....... .......+...+....+.+..+++++.|+.++
T Consensus        84 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~  161 (293)
T d1p22a2          84 TGEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIK  161 (293)
T ss_dssp             SCCEEEEECCCCSCE--EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEE
T ss_pred             ccccccccccccccc--ccccccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCCCcee
Confidence            988776666554443  345566778999999999999998765432 23344566777888888889999999999999


Q ss_pred             EEEccCCcccccCC--CCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeec
Q 023772          170 TFDIRVGRELSDDL--GQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGS  247 (277)
Q Consensus       170 i~d~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs  247 (277)
                      +||+++++.+....  ...+..+.+  ++.++++++.|+.|++||+++.+.+..+.++....    .++++++.++++|+
T Consensus       162 ~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v----~~~~~~~~~l~sg~  235 (293)
T d1p22a2         162 VWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELV----RCIRFDNKRIVSGA  235 (293)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCE----EEEECCSSEEEEEE
T ss_pred             eecCCCCcEEEEEcccccccccccC--CCCeEEEecCCCEEEEEecccceeeeeecccceee----eeccccceEEEEEc
Confidence            99999887654432  345555555  46689999999999999999999998888775322    24567888999999


Q ss_pred             CCCeEEEEECcCc---------cceeeeccCcceeEe
Q 023772          248 EDGYIYFWDLVDA---------SVVAKFKAHSLVVKL  275 (277)
Q Consensus       248 ~d~~i~iwd~~~~---------~~~~~~~~h~~~v~~  275 (277)
                      .||.|++||+...         .+++.+.+|...|..
T Consensus       236 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~  272 (293)
T d1p22a2         236 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFR  272 (293)
T ss_dssp             TTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCC
T ss_pred             CCCEEEEEECCCCccccccCCceeeEEecCCCCCEEE
Confidence            9999999997653         456888899887754

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.2e-35  Score=244.67  Aligned_cols=260  Identities=16%  Similarity=0.272  Sum_probs=191.0

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCe------eEEEEeccCccEEEEEE---cC----CCCEEEE
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI------HIKTYKSHGREVRDVHV---TA----DNSKLIS   77 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~------~~~~~~~h~~~v~~~~~---~~----~~~~l~t   77 (277)
                      ....++|++.|.++++++  ++++|||.|++|||||..+..      .......|...+..+..   .+    +...+++
T Consensus         7 ~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s   84 (393)
T d1sq9a_           7 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT   84 (393)
T ss_dssp             EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred             eecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEE
Confidence            355689999999999864  699999999999999965432      12233344444333322   11    2346789


Q ss_pred             EeCCCcEEEEECCCCceeEEe----------ecccCceeEEEEecC-----CCEEEEEeCCCcEEEEeCccCCCc-----
Q 023772           78 CGGDRQIFYWDVSTGRVIRKF----------RGHESEVNAVKFNEY-----SSVVVSAGYDQSLRAWDCRSHSTE-----  137 (277)
Q Consensus        78 ~s~d~~v~~wd~~~~~~~~~~----------~~h~~~v~~i~~~~~-----~~~l~s~~~d~~i~iwd~~~~~~~-----  137 (277)
                      ++.|+.|++|++........+          ..+...+..+.+.++     +.++++++.||++++|++......     
T Consensus        85 ~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~  164 (393)
T d1sq9a_          85 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT  164 (393)
T ss_dssp             EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred             EeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceee
Confidence            999999999997644321111          124566777887765     467899999999999997532110     


Q ss_pred             ----ce-------EeeccccCcEEEEEecCC-eEEEeecCCcEEEEEccCCcccc--------cCCCCCeeEEEEeCCCC
Q 023772          138 ----PI-------QIIDSFQDSVMSVCLTKT-EIIGGSVDGTVRTFDIRVGRELS--------DDLGQPVNCISMSNDGN  197 (277)
Q Consensus       138 ----~~-------~~~~~~~~~~~~~~~~~~-~~~~g~~d~~i~i~d~~~~~~~~--------~~~~~~v~~~~~s~~~~  197 (277)
                          ..       .........+.++.++++ .+++|+.|++|++||+++++.+.        ..+..+|++++|+|+|+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~  244 (393)
T d1sq9a_         165 LNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS  244 (393)
T ss_dssp             TCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT
T ss_pred             eeeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccc
Confidence                00       001122334566777765 58899999999999998876532        13456899999999999


Q ss_pred             EEEEEecCCe---EEEEECCCCceEEEEe-------------ccccceeeeeeEecCCCceEEeecCCCeEEEEECcCcc
Q 023772          198 CILASCLDST---LRLLDRSTGELLQEYK-------------GHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDAS  261 (277)
Q Consensus       198 ~l~~~~~d~~---i~~wd~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~  261 (277)
                      +|++|+.|++   |++||+++++++..+.             +|.  ..+..++|+|++++|++|+.|++|++||+.+++
T Consensus       245 ~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~--~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~  322 (393)
T d1sq9a_         245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS--SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE  322 (393)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBS--SCEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred             eeeeecCCCCcceeeecccccceeeeeeccccccccceeeeeccc--CceeeeccCCCCCeeEEECCCCEEEEEECCCCC
Confidence            9999999874   8999999998888765             453  345677899999999999999999999999999


Q ss_pred             ceeeeccCcceeE
Q 023772          262 VVAKFKAHSLVVK  274 (277)
Q Consensus       262 ~~~~~~~h~~~v~  274 (277)
                      ++.++++|...|.
T Consensus       323 ~~~~l~gH~~~v~  335 (393)
T d1sq9a_         323 RITTLNMHCDDIE  335 (393)
T ss_dssp             EEEEEECCGGGCS
T ss_pred             EEEEECCcCCccc
Confidence            9999999988775

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.4e-34  Score=232.06  Aligned_cols=250  Identities=14%  Similarity=0.155  Sum_probs=197.4

Q ss_pred             cEEEEEEeCCCCEEEEEeCCC-cEEEEcCCCC--eeEEEEeccC-ccEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCc
Q 023772           20 AVLAARFNGDGNYCLSCGKDR-TIRLWNPHRG--IHIKTYKSHG-REVRDVHVTA--DNSKLISCGGDRQIFYWDVSTGR   93 (277)
Q Consensus        20 ~V~~~~~~~~~~~l~s~s~d~-~v~iwd~~~~--~~~~~~~~h~-~~v~~~~~~~--~~~~l~t~s~d~~v~~wd~~~~~   93 (277)
                      .+++++|+|+|+.|+.++.+. .++.|+....  .....+.+|. ..|++++|+|  ++.+|++|+.||+|++||+..++
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~   98 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK   98 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence            457889999999999876554 4678875443  4466777774 6799999998  56799999999999999997654


Q ss_pred             ee--------EEeecccCceeEEEEecCCCEEEEEeC--CCcEEEEeCccCCCcceEeeccccCcEEEEEecCC---eEE
Q 023772           94 VI--------RKFRGHESEVNAVKFNEYSSVVVSAGY--DQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT---EII  160 (277)
Q Consensus        94 ~~--------~~~~~h~~~v~~i~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  160 (277)
                      ..        ..+..|..+|.+++|+++++++++++.  ++.+.+|+....  ..+..+..|...+.++.+.+.   .++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~  176 (325)
T d1pgua1          99 ESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG--NSLGEVSGHSQRINACHLKQSRPMRSM  176 (325)
T ss_dssp             GGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC--CEEEECCSCSSCEEEEEECSSSSCEEE
T ss_pred             ceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccc--ccceeeeecccccccccccccccceEE
Confidence            32        335568899999999999999888764  678999998654  345566678888888888754   377


Q ss_pred             EeecCCcEEEEEccCCcccc-----cCCCCCeeEEEEeCC-CCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeee
Q 023772          161 GGSVDGTVRTFDIRVGRELS-----DDLGQPVNCISMSND-GNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDC  234 (277)
Q Consensus       161 ~g~~d~~i~i~d~~~~~~~~-----~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  234 (277)
                      +++.|+.+++||++..+...     ..+...|.+++|+|+ +.+|++++.|+.|++||.++++++..+.+|.........
T Consensus       177 ~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~  256 (325)
T d1pgua1         177 TVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIF  256 (325)
T ss_dssp             EEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEE
T ss_pred             EeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccccccccccccccee
Confidence            89999999999987655322     233457999999996 688999999999999999999999999888654433322


Q ss_pred             Ee-cCCCceEEeecCCCeEEEEECcCccceeeeccCcc
Q 023772          235 CL-TNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSL  271 (277)
Q Consensus       235 ~~-~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~  271 (277)
                      +. .+++.+|++|+.|+.|++||++++++++.+..|..
T Consensus       257 s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~  294 (325)
T d1pgua1         257 ALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ  294 (325)
T ss_dssp             EEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTT
T ss_pred             eeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCC
Confidence            22 37889999999999999999999999998876643

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.2e-33  Score=226.21  Aligned_cols=263  Identities=9%  Similarity=0.105  Sum_probs=194.1

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCee---EEEEeccCccEEEEEEcCCC-CEEEEEeCCCcEEE
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIH---IKTYKSHGREVRDVHVTADN-SKLISCGGDRQIFY   86 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~---~~~~~~h~~~v~~~~~~~~~-~~l~t~s~d~~v~~   86 (277)
                      .+++++|++.|++++|+|++++|++||.|++|||||+.++..   +....+|..+|.+++|++++ .+|++|+.|+.|++
T Consensus         4 v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~   83 (342)
T d1yfqa_           4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred             EEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceee
Confidence            456789999999999999999999999999999999865433   23334699999999999865 57899999999999


Q ss_pred             EECCCCceeEEeecccCce-eEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeec------cccCcEEEEEecCCeE
Q 023772           87 WDVSTGRVIRKFRGHESEV-NAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIID------SFQDSVMSVCLTKTEI  159 (277)
Q Consensus        87 wd~~~~~~~~~~~~h~~~v-~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~  159 (277)
                      |+...+........+.... ....+.++...+++++.|+++++||++...........      ........+......+
T Consensus        84 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (342)
T d1yfqa_          84 VDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRL  163 (342)
T ss_dssp             ECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEE
T ss_pred             eecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCce
Confidence            9999887776666554443 45556677889999999999999998754333222211      1223345566677889


Q ss_pred             EEeecCCcEEEEEccCCccccc-----CCCCCeeEEEE-eCCCCEEEEEecCCeEEEEECCCCceE------EEEe---c
Q 023772          160 IGGSVDGTVRTFDIRVGRELSD-----DLGQPVNCISM-SNDGNCILASCLDSTLRLLDRSTGELL------QEYK---G  224 (277)
Q Consensus       160 ~~g~~d~~i~i~d~~~~~~~~~-----~~~~~v~~~~~-s~~~~~l~~~~~d~~i~~wd~~~~~~~------~~~~---~  224 (277)
                      ++++.|+.+++||++..+....     .......+..+ .+++..+++++.||.+.+|+.......      ..+.   .
T Consensus       164 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~  243 (342)
T d1yfqa_         164 IVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL  243 (342)
T ss_dssp             EEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCC
T ss_pred             eeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeee
Confidence            9999999999999987654321     22234555444 456788999999999999997543211      1111   0


Q ss_pred             ---cc-cceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeecc-Cccee
Q 023772          225 ---HI-CKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKA-HSLVV  273 (277)
Q Consensus       225 ---~~-~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~-h~~~v  273 (277)
                         +. .......++++|++.+|++|+.||.|++||+.+++.+.++.. |...+
T Consensus       244 ~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~  297 (342)
T d1yfqa_         244 NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSV  297 (342)
T ss_dssp             CTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEE
T ss_pred             ccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEE
Confidence               11 112234568999999999999999999999999999998874 54443

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.4e-31  Score=215.79  Aligned_cols=241  Identities=22%  Similarity=0.384  Sum_probs=205.1

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC----eeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEE
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG----IHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFY   86 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~   86 (277)
                      ...+.+|.++|.+++|+|++.++++|+.|+.+++|+....    .....+.+|.......... .+..+.....|.....
T Consensus        90 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  168 (340)
T d1tbga_          90 VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL-DDNQIVTSSGDTTCAL  168 (340)
T ss_dssp             EEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEE-ETTEEEEEETTTEEEE
T ss_pred             EEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceecccccccccccccc-cccccccccccccccc
Confidence            4567899999999999999999999999999999996543    4456677787666665555 4567788889999999


Q ss_pred             EECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEeec
Q 023772           87 WDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSV  164 (277)
Q Consensus        87 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~  164 (277)
                      +.............+...+....+.+...++++++.|+.|++||+++.  .....+..+...+.++.+++  ..+++|+.
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~--~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~  246 (340)
T d1tbga_         169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG--MCRQTFTGHESDINAICFFPNGNAFATGSD  246 (340)
T ss_dssp             EETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTT--EEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             cccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCC--cEEEEEeCCCCCeEEEEECCCCCEEEEEeC
Confidence            999888887778888899999999999999999999999999998764  34556677888888888865  45999999


Q ss_pred             CCcEEEEEccCCccccc----CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCC
Q 023772          165 DGTVRTFDIRVGRELSD----DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSD  240 (277)
Q Consensus       165 d~~i~i~d~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (277)
                      |+.|++||++.......    .....+.+++|+|++++|++|+.||.|++||+.+++++..+.+|...  +..++++|++
T Consensus       247 d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~--V~~l~~s~d~  324 (340)
T d1tbga_         247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR--VSCLGVTDDG  324 (340)
T ss_dssp             TSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSC--EEEEEECTTS
T ss_pred             CCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCC--EEEEEEeCCC
Confidence            99999999987765432    33457999999999999999999999999999999999999998653  4567789999


Q ss_pred             ceEEeecCCCeEEEEE
Q 023772          241 AHVTGGSEDGYIYFWD  256 (277)
Q Consensus       241 ~~l~sgs~d~~i~iwd  256 (277)
                      .+|++|+.||.|++||
T Consensus       325 ~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         325 MAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SCEEEEETTSCEEEEC
T ss_pred             CEEEEEccCCEEEEeC
Confidence            9999999999999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.3e-32  Score=217.08  Aligned_cols=245  Identities=17%  Similarity=0.185  Sum_probs=187.5

Q ss_pred             cccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023772            9 TEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWD   88 (277)
Q Consensus         9 ~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd   88 (277)
                      +...+|+||.++|++++|+|    |+|||.||+|++||+.++     .+.|...|.++.+.++ ..+++++.|+++++|+
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w~   73 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA-QEYSSISWDDTLKVNG   73 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCST-TCCEEEETTTEEEETT
T ss_pred             ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCC-CeEEEEeecccccccc
Confidence            34568999999999999987    899999999999998764     3689999999999865 5689999999999998


Q ss_pred             CCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCC-c
Q 023772           89 VSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDG-T  167 (277)
Q Consensus        89 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~-~  167 (277)
                      +...+       ....+..+.+.+++..++++ .++.+.+|+......  ...+. ....+..+.+++..+++++.++ .
T Consensus        74 ~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~  142 (287)
T d1pgua2          74 ITKHE-------FGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDI--IKSVR-LNSPGSAVSLSQNYVAVGLEEGNT  142 (287)
T ss_dssp             EEEEE-------CSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCE--EEEEE-CSSCEEEEEECSSEEEEEETTTSC
T ss_pred             ccccc-------cccceeeeeeccCCceEEEe-ecccceeeeccceee--eeecc-ccceeeeeeccCcceeeeccccce
Confidence            75322       23456678888887777665 556688888765432  22222 3345667777888887777764 7


Q ss_pred             EEEEEccCCccc---ccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEE-EEeccccceeeeeeEec------
Q 023772          168 VRTFDIRVGREL---SDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQ-EYKGHICKSFKTDCCLT------  237 (277)
Q Consensus       168 i~i~d~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~------  237 (277)
                      +++|++...+..   ...+..++++++|+|++.+|++|+.||.|++||+.+++... .+.+|....  ...+++      
T Consensus       143 v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v--~~~~~~p~~~~~  220 (287)
T d1pgua2         143 IQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKI--NAISWKPAEKGA  220 (287)
T ss_dssp             EEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCE--EEEEECCCC---
T ss_pred             eeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccccccccccc--ceeeeccccccc
Confidence            999998755432   22345689999999999999999999999999999887654 355664432  233343      


Q ss_pred             ----CCCceEEeecCCCeEEEEECcC-ccceeeeccCcceeEee
Q 023772          238 ----NSDAHVTGGSEDGYIYFWDLVD-ASVVAKFKAHSLVVKLL  276 (277)
Q Consensus       238 ----~~~~~l~sgs~d~~i~iwd~~~-~~~~~~~~~h~~~v~~~  276 (277)
                          +++.++++|+.|++|++||+++ ++++..+.+|...|+.+
T Consensus       221 ~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v  264 (287)
T d1pgua2         221 NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNL  264 (287)
T ss_dssp             ---CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEE
T ss_pred             ccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEE
Confidence                4567899999999999999977 66778888999988765

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-30  Score=209.13  Aligned_cols=242  Identities=26%  Similarity=0.412  Sum_probs=186.7

Q ss_pred             cccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEE------------------------
Q 023772            9 TEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVR------------------------   64 (277)
Q Consensus         9 ~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~------------------------   64 (277)
                      +....+.+|.++|.+++|+++  +|++|+.|+++++|+............+...+.                        
T Consensus        48 ~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~  125 (342)
T d2ovrb2          48 KCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIE  125 (342)
T ss_dssp             CEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESS
T ss_pred             CEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecc
Confidence            345678899999999999974  999999999999999776544333322221111                        


Q ss_pred             --------------EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEe
Q 023772           65 --------------DVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWD  130 (277)
Q Consensus        65 --------------~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd  130 (277)
                                    .....+....+++++.|+.+++||....+.+..+.+|...+..+.  +++..+++++.||+|++||
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~l~s~~~dg~i~~~d  203 (342)
T d2ovrb2         126 TGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ--FDGIHVVSGSLDTSIRVWD  203 (342)
T ss_dssp             SCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEE--ECSSEEEEEETTSCEEEEE
T ss_pred             cccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCccccccccc--CCCCEEEEEeCCCeEEEee
Confidence                          112233456788899999999999999999999999987776544  5678999999999999999


Q ss_pred             CccCCCcceEeeccccCcEEEEEecCCeEEEeecCCcEEEEEccCCccccc---CC--CCCeeEEEEeCCCCEEEEEecC
Q 023772          131 CRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSD---DL--GQPVNCISMSNDGNCILASCLD  205 (277)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~---~~--~~~v~~~~~s~~~~~l~~~~~d  205 (277)
                      ++...  .+.....+...+.++.++++.+++|+.|+.|++||+...+....   ..  ...+.++.+  +++++++|+.|
T Consensus       204 ~~~~~--~~~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~D  279 (342)
T d2ovrb2         204 VETGN--CIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDD  279 (342)
T ss_dssp             TTTCC--EEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETT
T ss_pred             cccce--eeeEecccccceeEEecCCCEEEEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCC
Confidence            87643  45566777888999999999999999999999999987654322   22  234555555  56789999999


Q ss_pred             CeEEEEECCCCceEEEEeccc---cceeeeeeEecCCCceEEeecCCCe----EEEEECc
Q 023772          206 STLRLLDRSTGELLQEYKGHI---CKSFKTDCCLTNSDAHVTGGSEDGY----IYFWDLV  258 (277)
Q Consensus       206 ~~i~~wd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~sgs~d~~----i~iwd~~  258 (277)
                      |.|++||++++++++.+....   ....+..++++|++.++++|+.||+    |++||.+
T Consensus       280 g~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         280 GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             SEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             CEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence            999999999999998875321   1234566788999999999998885    9999986

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.4e-31  Score=213.17  Aligned_cols=212  Identities=17%  Similarity=0.237  Sum_probs=164.9

Q ss_pred             CeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEee-cccCceeEEEEecCCCEEEEEeCCCcEEE
Q 023772           50 GIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFR-GHESEVNAVKFNEYSSVVVSAGYDQSLRA  128 (277)
Q Consensus        50 ~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s~~~d~~i~i  128 (277)
                      |+..+++.+|..+|++++|+|++++|+||+.|++|++||++++++++.+. .|..+|++++|+|++++ ++++.|+.+++
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~   80 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKV   80 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEE
Confidence            56788999999999999999999999999999999999999999888874 68999999999999864 56778999999


Q ss_pred             EeCccCCCcc-----------eEe--ec-------------------------cccCcEEEEEe--cCCeEEEeecCCcE
Q 023772          129 WDCRSHSTEP-----------IQI--ID-------------------------SFQDSVMSVCL--TKTEIIGGSVDGTV  168 (277)
Q Consensus       129 wd~~~~~~~~-----------~~~--~~-------------------------~~~~~~~~~~~--~~~~~~~g~~d~~i  168 (277)
                      |+........           ...  +.                         ........+.+  ++..+++|+.|+.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i  160 (299)
T d1nr0a2          81 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKV  160 (299)
T ss_dssp             ECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred             eccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9975321100           000  00                         00111222333  34568899999999


Q ss_pred             EEEEccCCcccc---cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEE---EEeccccceeeeeeEecCCCce
Q 023772          169 RTFDIRVGRELS---DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQ---EYKGHICKSFKTDCCLTNSDAH  242 (277)
Q Consensus       169 ~i~d~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  242 (277)
                      ++||++.++...   ..+..+|++++|+|++++|++++.|+.|++||+.++....   .+.+|..  ....++++|++.+
T Consensus       161 ~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~s~~~~~  238 (299)
T d1nr0a2         161 HVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA--KVACVSWSPDNVR  238 (299)
T ss_dssp             EEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSS--CEEEEEECTTSSE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccc
Confidence            999998765322   2456789999999999999999999999999998776553   3444543  3455678999999


Q ss_pred             EEeecCCCeEEEEECcCcccee
Q 023772          243 VTGGSEDGYIYFWDLVDASVVA  264 (277)
Q Consensus       243 l~sgs~d~~i~iwd~~~~~~~~  264 (277)
                      +++|+.||.|++||++++....
T Consensus       239 l~sgs~dg~i~iwd~~~~~~~~  260 (299)
T d1nr0a2         239 LATGSLDNSVIVWNMNKPSDHP  260 (299)
T ss_dssp             EEEEETTSCEEEEETTCTTSCC
T ss_pred             eEEEcCCCEEEEEECCCCCcce
Confidence            9999999999999999876543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.7e-31  Score=213.52  Aligned_cols=257  Identities=20%  Similarity=0.339  Sum_probs=190.9

Q ss_pred             cccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccC--ccEEEEEEcCCCCEEEEEeCCCcEEE
Q 023772            9 TEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG--REVRDVHVTADNSKLISCGGDRQIFY   86 (277)
Q Consensus         9 ~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~t~s~d~~v~~   86 (277)
                      +....+.+|+++|++++|+++ .+|+||+.|++|++|+............+.  .......+.+++..+++++.|+.|++
T Consensus        44 ~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i  122 (355)
T d1nexb2          44 KFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV  122 (355)
T ss_dssp             EEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEE
T ss_pred             cEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEE
Confidence            345678999999999999985 589999999999999999887776655433  34556677888899999999999999


Q ss_pred             EECCCCceeEE-----------------------eecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeec
Q 023772           87 WDVSTGRVIRK-----------------------FRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIID  143 (277)
Q Consensus        87 wd~~~~~~~~~-----------------------~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  143 (277)
                      ||+.++.....                       ...|...+.  .+.+++++++++..|+.+++||++...  ......
T Consensus       123 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~d~~i~~~d~~~~~--~~~~~~  198 (355)
T d1nexb2         123 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVSGHGNIVVSGSYDNTLIVWDVAQMK--CLYILS  198 (355)
T ss_dssp             EECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEE--EEEEETTEEEEEETTSCEEEEETTTTE--EEEEEC
T ss_pred             EEccCCceeccccccceeccceeccccccceeeeeeecccccc--ccccccceeeeecccceeeeeeccccc--ceeeee
Confidence            99976543321                       223334443  345667899999999999999987643  334444


Q ss_pred             cccCcEEEEEec--CCeEEEeecCCcEEEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceE
Q 023772          144 SFQDSVMSVCLT--KTEIIGGSVDGTVRTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELL  219 (277)
Q Consensus       144 ~~~~~~~~~~~~--~~~~~~g~~d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~  219 (277)
                      .+...+....++  ...+++++.|+.|++||++++..+..  .+..+|.++++++  ++|++++.||.|++||+.++...
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~  276 (355)
T d1nexb2         199 GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRK  276 (355)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEE
T ss_pred             ccccccccccccccceeeecccccceEEeeecccccccccccccccccccccccc--ceeeeeeccccccccccccccee
Confidence            455555555554  45699999999999999998776543  3456889998864  68999999999999999887654


Q ss_pred             EEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCcccee-eeccCcceeEee
Q 023772          220 QEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVA-KFKAHSLVVKLL  276 (277)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~-~~~~h~~~v~~~  276 (277)
                      .  ..|..... ...++++++.++++|+ |+.|++||+++++++. .+.+|...|..+
T Consensus       277 ~--~~~~~~~~-~~~~~~~~~~~l~~g~-d~~i~vwd~~tg~~~~~~~~~~~~~V~~v  330 (355)
T d1nexb2         277 F--SYHHTNLS-AITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSV  330 (355)
T ss_dssp             E--EEECTTCC-CCCEEEECSSEEEEEE-TTEEEEEETTTCCBCCSCTTTTCSEEEEE
T ss_pred             c--ccccCCce-EEEEEcCCCCEEEEEe-CCEEEEEECCCCCEEEEEecCCCCCEEEE
Confidence            3  33433322 2245677788777765 8999999999999985 567898887653

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.1e-28  Score=195.41  Aligned_cols=236  Identities=24%  Similarity=0.457  Sum_probs=185.1

Q ss_pred             cccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023772            9 TEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWD   88 (277)
Q Consensus         9 ~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd   88 (277)
                      +....+++|+++|++++|  ++++|+||+.|+.+++|++..+........+....  ..+.+....++++..++.+.+|+
T Consensus        46 ~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  121 (293)
T d1p22a2          46 ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWD  121 (293)
T ss_dssp             CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCE--EEEECCTTEEEEEETTSCEEEEE
T ss_pred             cEEEEEecCCCCEeeeec--ccceeeccccccccccccccccccccccccccccc--ccccccccceeecccccceeEee
Confidence            345678899999999887  57899999999999999999988777666544333  34555677899999999999999


Q ss_pred             CCCCce---eEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecC
Q 023772           89 VSTGRV---IRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVD  165 (277)
Q Consensus        89 ~~~~~~---~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d  165 (277)
                      ..+...   ...+..|...+..+.+.+  ..+++++.|+.+++||.+...  ....+..+...+..+.+++..+++++.|
T Consensus       122 ~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~~~~l~~~~~d  197 (293)
T d1p22a2         122 MASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTCE--FVRTLNGHKRGIACLQYRDRLVVSGSSD  197 (293)
T ss_dssp             CSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEEETTEEEEEETT
T ss_pred             ccccccccccccccccccccccceecc--cccccccCCCceeeecCCCCc--EEEEEcccccccccccCCCCeEEEecCC
Confidence            987543   445667888888777664  578899999999999997643  4555667777888888999999999999


Q ss_pred             CcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCC---------CceEEEEeccccceeeeeeEe
Q 023772          166 GTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRST---------GELLQEYKGHICKSFKTDCCL  236 (277)
Q Consensus       166 ~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~---------~~~~~~~~~~~~~~~~~~~~~  236 (277)
                      ++|++||+++.+.+............+++++.+|++++.||.|++||+..         ..+++.+.+|....  ..+++
T Consensus       198 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V--~~v~~  275 (293)
T d1p22a2         198 NTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRV--FRLQF  275 (293)
T ss_dssp             SCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCC--CCEEE
T ss_pred             CEEEEEecccceeeeeecccceeeeeccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCE--EEEEE
Confidence            99999999987765544333222335677888999999999999999643         34677888886543  33344


Q ss_pred             cCCCceEEeecCCCeEEEEE
Q 023772          237 TNSDAHVTGGSEDGYIYFWD  256 (277)
Q Consensus       237 ~~~~~~l~sgs~d~~i~iwd  256 (277)
                        ++.+|++|+.||+|++||
T Consensus       276 --d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         276 --DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             --CSSCEEECCSSSEEEEEC
T ss_pred             --cCCEEEEEecCCEEEEeC
Confidence              577899999999999997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=4.1e-27  Score=189.94  Aligned_cols=253  Identities=12%  Similarity=0.063  Sum_probs=182.6

Q ss_pred             eeccCCcEEEEEEeCC-CCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccE-EEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 023772           14 LKGHEGAVLAARFNGD-GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREV-RDVHVTADNSKLISCGGDRQIFYWDVST   91 (277)
Q Consensus        14 l~~H~~~V~~~~~~~~-~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v-~~~~~~~~~~~l~t~s~d~~v~~wd~~~   91 (277)
                      ..+|.++|.+++|+++ +.+|++|+.|+++++|+...+........+.... ....+.++...+++++.|+++++||+++
T Consensus        52 ~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~  131 (342)
T d1yfqa_          52 SLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRN  131 (342)
T ss_dssp             EEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHH
T ss_pred             ecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccc
Confidence            3479999999999986 4588999999999999998877766666554443 4555667888999999999999999865


Q ss_pred             Ccee----EEeecc--cCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEe-eccccCcEEEEEe---cCCeEEE
Q 023772           92 GRVI----RKFRGH--ESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQI-IDSFQDSVMSVCL---TKTEIIG  161 (277)
Q Consensus        92 ~~~~----~~~~~h--~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~  161 (277)
                      +...    .....+  ........+.+.+..+++++.|+.|++||++......... .............   .+..+++
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (342)
T d1yfqa_         132 YGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYAC  211 (342)
T ss_dssp             HTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEE
T ss_pred             cccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEe
Confidence            4332    222222  2334456677888999999999999999997654432222 2222223333332   3456899


Q ss_pred             eecCCcEEEEEccCCcccc-----------------cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEec
Q 023772          162 GSVDGTVRTFDIRVGRELS-----------------DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKG  224 (277)
Q Consensus       162 g~~d~~i~i~d~~~~~~~~-----------------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~  224 (277)
                      ++.||.+.+|++.......                 ..+...+++++|+|++++|++|+.||.|++||+++++.+..+..
T Consensus       212 ~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~  291 (342)
T d1yfqa_         212 SSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK  291 (342)
T ss_dssp             EETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred             ecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecC
Confidence            9999999999976432211                 11234689999999999999999999999999999999888764


Q ss_pred             cccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCccee
Q 023772          225 HICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVV  273 (277)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v  273 (277)
                      +..   ....++++++.++++|+.|+.+++|....    +.+..|+..|
T Consensus       292 ~~~---~~~~~~s~~~~~l~~a~sdd~~~~~~~~~----~~~~~~~~~i  333 (342)
T d1yfqa_         292 FNE---DSVVKIACSDNILCLATSDDTFKTNAAID----QTIELNASSI  333 (342)
T ss_dssp             CSS---SEEEEEEECSSEEEEEEECTHHHHCSSSC----TTSCCCCCEE
T ss_pred             CCC---CEEEEEEeCCCEEEEEEcCCcEEEeeeeC----CCccCCCCeE
Confidence            422   12356788899999999999888886532    3344454444

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2e-27  Score=197.76  Aligned_cols=217  Identities=9%  Similarity=0.097  Sum_probs=156.6

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCee---EE--EE-----eccCccEEEEEEcCC-----CCEEEEEeCCCcEEEEECCCCc-
Q 023772           30 GNYCLSCGKDRTIRLWNPHRGIH---IK--TY-----KSHGREVRDVHVTAD-----NSKLISCGGDRQIFYWDVSTGR-   93 (277)
Q Consensus        30 ~~~l~s~s~d~~v~iwd~~~~~~---~~--~~-----~~h~~~v~~~~~~~~-----~~~l~t~s~d~~v~~wd~~~~~-   93 (277)
                      +.++++++.||.+++|+......   ..  ..     ..+...+..+++.++     +.++++++.|+++++|++.... 
T Consensus        79 ~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~  158 (393)
T d1sq9a_          79 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD  158 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred             CcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCc
Confidence            45778999999999998643221   11  11     124456778888765     3678999999999999974221 


Q ss_pred             -----------------eeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcc----eEeeccccCcEEEE
Q 023772           94 -----------------VIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEP----IQIIDSFQDSVMSV  152 (277)
Q Consensus        94 -----------------~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~----~~~~~~~~~~~~~~  152 (277)
                                       .......+...+.+++|+|++ +|++|+.|++|++||+.+.....    ...+..|...|.++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l  237 (393)
T d1sq9a_         159 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV  237 (393)
T ss_dssp             HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEE
T ss_pred             ccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEc
Confidence                             011122345668899999987 88999999999999997643211    12234577888888


Q ss_pred             EecC--CeEEEeecCCc---EEEEEccCCccccc---------------CCCCCeeEEEEeCCCCEEEEEecCCeEEEEE
Q 023772          153 CLTK--TEIIGGSVDGT---VRTFDIRVGRELSD---------------DLGQPVNCISMSNDGNCILASCLDSTLRLLD  212 (277)
Q Consensus       153 ~~~~--~~~~~g~~d~~---i~i~d~~~~~~~~~---------------~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd  212 (277)
                      .++|  ..|++|+.|++   |++||+.+++.+..               .|...|++++|+|++++|++++.|++|++||
T Consensus       238 ~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd  317 (393)
T d1sq9a_         238 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD  317 (393)
T ss_dssp             EECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             ccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEE
Confidence            8865  46999998875   89999987654321               2456799999999999999999999999999


Q ss_pred             CCCCceEEEEeccccceee--eeeEecCCCceEEeec
Q 023772          213 RSTGELLQEYKGHICKSFK--TDCCLTNSDAHVTGGS  247 (277)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~sgs  247 (277)
                      ++++++++++.+|...+..  ...++++++..+++++
T Consensus       318 ~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         318 VKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG  354 (393)
T ss_dssp             TTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred             CCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcc
Confidence            9999999999999654322  2235666666665443

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=3.5e-28  Score=198.79  Aligned_cols=248  Identities=14%  Similarity=0.071  Sum_probs=186.5

Q ss_pred             eccCCcEEEEEEeCCCCEEEEEeCCC--cEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 023772           15 KGHEGAVLAARFNGDGNYCLSCGKDR--TIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTG   92 (277)
Q Consensus        15 ~~H~~~V~~~~~~~~~~~l~s~s~d~--~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~   92 (277)
                      .+|.+.|.+++|+|||++|++++.|.  .|++||..+++. ..+..|...|.+++|+|++++|++++.++.+++|+++++
T Consensus        39 ~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~-~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~  117 (360)
T d1k32a3          39 VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA-EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG  117 (360)
T ss_dssp             CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE-EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE-EEeeCCCceEEeeeecccccccceecccccccccccccc
Confidence            37999999999999999999877654  799999988764 466789999999999999999999999999999999999


Q ss_pred             ceeEEeecccCceeEEEEecCCCEEEEEe----------CCCcEEEEeCccCCCcceEeeccccCcEEEEEe--cCCeEE
Q 023772           93 RVIRKFRGHESEVNAVKFNEYSSVVVSAG----------YDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCL--TKTEII  160 (277)
Q Consensus        93 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  160 (277)
                      +....+..|...+.+++|+|++++|+.+.          .++.+++||+.....   .....+......+.+  ++..++
T Consensus       118 ~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~---~~~~~~~~~~~~~~~spdg~~l~  194 (360)
T d1k32a3         118 KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI---FAATTENSHDYAPAFDADSKNLY  194 (360)
T ss_dssp             CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE---EECSCSSSBEEEEEECTTSCEEE
T ss_pred             ceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCce---eeecccccccccccccCCCCEEE
Confidence            99999999999999999999999998653          456799999875422   222233334444444  456699


Q ss_pred             EeecCCcEEEEEccCCccc------------c-------c--------------------------CCCCCeeEEEEeCC
Q 023772          161 GGSVDGTVRTFDIRVGREL------------S-------D--------------------------DLGQPVNCISMSND  195 (277)
Q Consensus       161 ~g~~d~~i~i~d~~~~~~~------------~-------~--------------------------~~~~~v~~~~~s~~  195 (277)
                      .++.++.+++||.......            .       .                          ........+...++
T Consensus       195 ~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (360)
T d1k32a3         195 YLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLES  274 (360)
T ss_dssp             EEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSS
T ss_pred             EEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCC
Confidence            9999999999986432100            0       0                          00011233333333


Q ss_pred             CC-------------EEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccc
Q 023772          196 GN-------------CILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASV  262 (277)
Q Consensus       196 ~~-------------~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~  262 (277)
                      +.             ++++++.++.|++||+.+++.. .+.++     ...++++|||++|++++.||.|++||+++++.
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~~~~~-----v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~  348 (360)
T d1k32a3         275 SILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT-EVKNN-----LTDLRLSADRKTVMVRKDDGKIYTFPLEKPED  348 (360)
T ss_dssp             EEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE-EEEEE-----EEEEEECTTSCEEEEEETTSCEEEEESSCTTS
T ss_pred             CceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE-EecCC-----cCEEEECCCCCEEEEEECCCeEEEEECCCCCc
Confidence            22             3445567889999999887653 33332     34568999999999999999999999999999


Q ss_pred             eeeeccCcce
Q 023772          263 VAKFKAHSLV  272 (277)
Q Consensus       263 ~~~~~~h~~~  272 (277)
                      +..+..+-.+
T Consensus       349 ~~~~~~d~~~  358 (360)
T d1k32a3         349 ERTVETDKRP  358 (360)
T ss_dssp             CEECCCCSSC
T ss_pred             ceEEEecccc
Confidence            9888766443

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=3.1e-26  Score=182.13  Aligned_cols=228  Identities=12%  Similarity=0.180  Sum_probs=171.0

Q ss_pred             eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 023772           14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGR   93 (277)
Q Consensus        14 l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~   93 (277)
                      ..+|.+.|.++.|++++ .+++++.|+++++|+..+.       .....+..+.+.+++..++++ .++.+.+|+..+++
T Consensus        42 ~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  112 (287)
T d1pgua2          42 HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKH-------EFGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGD  112 (287)
T ss_dssp             ECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEE-------ECSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCC
T ss_pred             CCCCCCCEEEEEecCCC-eEEEEeecccccccccccc-------ccccceeeeeeccCCceEEEe-ecccceeeecccee
Confidence            46899999999998765 6789999999999996532       123467788888887666654 56678999999998


Q ss_pred             eeEEeecccCceeEEEEecCCCEEEEEeCCC-cEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEeecCCcEEE
Q 023772           94 VIRKFRGHESEVNAVKFNEYSSVVVSAGYDQ-SLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRT  170 (277)
Q Consensus        94 ~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~d~~i~i  170 (277)
                      .+..+..+ .++  ..+.+++..++.++.|+ .+++|++..... .......+...+.++.+++  ..+++|+.||.|++
T Consensus       113 ~~~~~~~~-~~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i  188 (287)
T d1pgua2         113 IIKSVRLN-SPG--SAVSLSQNYVAVGLEEGNTIQVFKLSDLEV-SFDLKTPLRAKPSYISISPSETYIAAGDVMGKILL  188 (287)
T ss_dssp             EEEEEECS-SCE--EEEEECSSEEEEEETTTSCEEEEETTEEEE-EEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             eeeecccc-cee--eeeeccCcceeeeccccceeeeeeccccce-eeeeeeccCCceeEEEeccCccccccccccccccc
Confidence            88877643 333  45667777888777765 799999864322 1122233556677777765  45999999999999


Q ss_pred             EEccCCcccc---cCCCCCeeEEEEeCC----------CCEEEEEecCCeEEEEECCC-CceEEEEeccccceeeeeeEe
Q 023772          171 FDIRVGRELS---DDLGQPVNCISMSND----------GNCILASCLDSTLRLLDRST-GELLQEYKGHICKSFKTDCCL  236 (277)
Q Consensus       171 ~d~~~~~~~~---~~~~~~v~~~~~s~~----------~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~  236 (277)
                      ||+..++...   ..+..+|++++|+|.          +.+|++|+.|++|++||+++ ++++..+.+|...  +..+++
T Consensus       189 ~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~--V~~v~~  266 (287)
T d1pgua2         189 YDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDG--VNNLLW  266 (287)
T ss_dssp             EETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTC--EEEEEE
T ss_pred             eeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCC--eEEEEE
Confidence            9998776433   244678999999874          56899999999999999976 5667777778644  455667


Q ss_pred             cCCCceEEeecCCCeEEEEEC
Q 023772          237 TNSDAHVTGGSEDGYIYFWDL  257 (277)
Q Consensus       237 ~~~~~~l~sgs~d~~i~iwd~  257 (277)
                      +|++ .+++++.|+.|++||+
T Consensus       267 ~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         267 ETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EETT-EEEEEETTSCEEEEEE
T ss_pred             CCCC-EEEEEECCCeEEEEEE
Confidence            7765 5788889999999996

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.93  E-value=7.6e-23  Score=162.77  Aligned_cols=241  Identities=11%  Similarity=0.132  Sum_probs=181.2

Q ss_pred             CcEEEEEEeCCCCEEE-EEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceeE
Q 023772           19 GAVLAARFNGDGNYCL-SCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLI-SCGGDRQIFYWDVSTGRVIR   96 (277)
Q Consensus        19 ~~V~~~~~~~~~~~l~-s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-t~s~d~~v~~wd~~~~~~~~   96 (277)
                      +.+..++|+|||++|+ +++.++.|++||+.+++.+.++..+. .+..+.++++++.++ ++..++.+.+|+..+++...
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG  110 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccccccccccccccccccceeeecccccceeee
Confidence            4568899999999874 77789999999999999999998775 568899999998665 55667899999999999888


Q ss_pred             EeecccCceeEEEEecCCCEEE-EEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec--CCeEEEeecC-CcEEEEE
Q 023772           97 KFRGHESEVNAVKFNEYSSVVV-SAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT--KTEIIGGSVD-GTVRTFD  172 (277)
Q Consensus        97 ~~~~h~~~v~~i~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~d-~~i~i~d  172 (277)
                      .+..+ .....+.++|++..++ ++..++.+.+|+......  ...... ......+.+.  ...++++..+ +.+.+|+
T Consensus       111 ~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (301)
T d1l0qa2         111 TVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV--INTVSV-GRSPKGIAVTPDGTKVYVANFDSMSISVID  186 (301)
T ss_dssp             EEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE--EEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             ecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccce--eeeccc-CCCceEEEeeccccceeeeccccccccccc
Confidence            87755 4567799999998765 556688899999876432  222222 2233444444  4456655554 5676777


Q ss_pred             ccCCccccc-CCCCCeeEEEEeCCCCEEEEEec---CCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceE-Eeec
Q 023772          173 IRVGRELSD-DLGQPVNCISMSNDGNCILASCL---DSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHV-TGGS  247 (277)
Q Consensus       173 ~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~sgs  247 (277)
                      ....+.... .....+..++|+++++.++.+..   ++.|++||..+++++..+..+.   ....++++|+|++| ++++
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~---~~~~va~spdg~~l~va~~  263 (301)
T d1l0qa2         187 TVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALS  263 (301)
T ss_dssp             TTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEET
T ss_pred             ccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCC---CEEEEEEeCCCCEEEEEEC
Confidence            665543332 23455778999999998876643   4689999999999988876542   23557899999976 6788


Q ss_pred             CCCeEEEEECcCccceeeec
Q 023772          248 EDGYIYFWDLVDASVVAKFK  267 (277)
Q Consensus       248 ~d~~i~iwd~~~~~~~~~~~  267 (277)
                      .|+.|++||+++++++++++
T Consensus       264 ~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         264 FCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             TTTEEEEEETTTTEEEEEEE
T ss_pred             CCCeEEEEECCCCeEEEEEe
Confidence            89999999999999999887

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.93  E-value=1.9e-24  Score=176.41  Aligned_cols=186  Identities=15%  Similarity=0.123  Sum_probs=147.5

Q ss_pred             EEEeC-CCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceeEEeec
Q 023772           24 ARFNG-DGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDR--QIFYWDVSTGRVIRKFRG  100 (277)
Q Consensus        24 ~~~~~-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~--~v~~wd~~~~~~~~~~~~  100 (277)
                      -.||| ||+++++++. |.|++||...+..++.  .|...|.+++|+|++++|++++.+.  .|++||+++++.. .+..
T Consensus         8 ~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~   83 (360)
T d1k32a3           8 EDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEE   83 (360)
T ss_dssp             EEEEECGGGCEEEEET-TEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCC
T ss_pred             ccccCCCCCEEEEEEC-CeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeC
Confidence            56999 9999999875 7999999988876553  6899999999999999998877553  7999999887755 5678


Q ss_pred             ccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec--CCeEEE----------eecCCcE
Q 023772          101 HESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT--KTEIIG----------GSVDGTV  168 (277)
Q Consensus       101 h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----------g~~d~~i  168 (277)
                      |...|.+++|+|+++++++++.++.+++|+......  ......+...+..+.++  +..++.          +..++.+
T Consensus        84 ~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~  161 (360)
T d1k32a3          84 NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP--TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAI  161 (360)
T ss_dssp             CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--EEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEE
T ss_pred             CCceEEeeeecccccccceeccccccccccccccce--eeeeecccccccchhhccceeeeeeeccccccceeeccccce
Confidence            999999999999999999999999999999876543  33344444445445554  444553          3345578


Q ss_pred             EEEEccCCccccc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCC
Q 023772          169 RTFDIRVGRELSD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRST  215 (277)
Q Consensus       169 ~i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~  215 (277)
                      ++||+..++.... .....+..+.|+|+|++|++++.|+.+++||...
T Consensus       162 ~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~  209 (360)
T d1k32a3         162 HVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV  209 (360)
T ss_dssp             EEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred             eeeccccCceeeecccccccccccccCCCCEEEEEeCCCceEcccccc
Confidence            9999988765433 3456788899999999999999999999998654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=5.6e-24  Score=178.70  Aligned_cols=258  Identities=10%  Similarity=0.020  Sum_probs=163.9

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEE--E---eccCccEEEEEEcCCCCEEE-EEeCCCcE
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKT--Y---KSHGREVRDVHVTADNSKLI-SCGGDRQI   84 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~--~---~~h~~~v~~~~~~~~~~~l~-t~s~d~~v   84 (277)
                      ...+..|. .+..++|+|||+++++++.|+++++||+.+++....  +   .+|.+.+.+++|+|++++++ ++..++.+
T Consensus        55 ~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v  133 (426)
T d1hzua2          55 VKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQF  133 (426)
T ss_dssp             EEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEE
T ss_pred             EEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeE
Confidence            44566664 589999999999999999999999999998865433  2   24555677778889999875 45589999


Q ss_pred             EEEECCCCceeEEeecccCceeEEEEecCCCE-EEEEeCCCcEEEE-----------eCccCCCcceEeeccccCcEEEE
Q 023772           85 FYWDVSTGRVIRKFRGHESEVNAVKFNEYSSV-VVSAGYDQSLRAW-----------DCRSHSTEPIQIIDSFQDSVMSV  152 (277)
Q Consensus        85 ~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~-l~s~~~d~~i~iw-----------d~~~~~~~~~~~~~~~~~~~~~~  152 (277)
                      ++||.++++++.....|...+..+.+.+++.. .+..+.|+...++           +......... ...........+
T Consensus       134 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~  212 (426)
T d1hzua2         134 AIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTV-TSIGAAPFLADG  212 (426)
T ss_dssp             EEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEE-EEEECCSSEEEE
T ss_pred             EEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceee-EEeccCCccEee
Confidence            99999999988887766655544444444432 2333344443333           3222111111 111112222222


Q ss_pred             EecC--CeEEE------------------------------------------------eecCCcEEEEEccCCc-----
Q 023772          153 CLTK--TEIIG------------------------------------------------GSVDGTVRTFDIRVGR-----  177 (277)
Q Consensus       153 ~~~~--~~~~~------------------------------------------------g~~d~~i~i~d~~~~~-----  177 (277)
                      .+++  ..+++                                                .+.|+.+..|+.....     
T Consensus       213 ~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~  292 (426)
T d1hzua2         213 GWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYA  292 (426)
T ss_dssp             EECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTB
T ss_pred             eECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccccccccc
Confidence            3222  11211                                                2234445444433211     


Q ss_pred             --cc--ccCCCCCeeEEEEeCCCCEEEE-------EecCCeEEEEECCCCceEEEEeccc-------cceeeeeeEecCC
Q 023772          178 --EL--SDDLGQPVNCISMSNDGNCILA-------SCLDSTLRLLDRSTGELLQEYKGHI-------CKSFKTDCCLTNS  239 (277)
Q Consensus       178 --~~--~~~~~~~v~~~~~s~~~~~l~~-------~~~d~~i~~wd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~  239 (277)
                        ..  ...+...+..++|+|++++|++       ++.|++|++||+.++++..++..+.       .........|+||
T Consensus       293 ~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpD  372 (426)
T d1hzua2         293 WKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKR  372 (426)
T ss_dssp             TSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSS
T ss_pred             ceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCC
Confidence              00  1123456788999999999984       5568899999999988776653221       1112344579999


Q ss_pred             CceEE-e----ecCCCeEEEEECcCccceeeeccCc
Q 023772          240 DAHVT-G----GSEDGYIYFWDLVDASVVAKFKAHS  270 (277)
Q Consensus       240 ~~~l~-s----gs~d~~i~iwd~~~~~~~~~~~~h~  270 (277)
                      |++++ +    ++.|+.|++||..++++.+.++++.
T Consensus       373 Gk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~  408 (426)
T d1hzua2         373 GDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR  408 (426)
T ss_dssp             SSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT
T ss_pred             CCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC
Confidence            99763 2    3578999999999999999998874

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.92  E-value=5.1e-23  Score=166.75  Aligned_cols=245  Identities=9%  Similarity=-0.000  Sum_probs=169.7

Q ss_pred             EEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEec-cCccEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEEeecc
Q 023772           24 ARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKS-HGREVRDVHVTADNSKL-ISCGGDRQIFYWDVSTGRVIRKFRGH  101 (277)
Q Consensus        24 ~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l-~t~s~d~~v~~wd~~~~~~~~~~~~h  101 (277)
                      ++|+++++++++++.|++|.+||+.+++.+++++. |...+.+++|+|+++++ ++++.++.|.+||+.+++.+.++...
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            46889999999999999999999999999998874 56678999999999987 55567899999999999988776533


Q ss_pred             c------CceeEEEEecCCCEEEEEe------------CCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC-eE---
Q 023772          102 E------SEVNAVKFNEYSSVVVSAG------------YDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT-EI---  159 (277)
Q Consensus       102 ~------~~v~~i~~~~~~~~l~s~~------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---  159 (277)
                      .      ..+..++++|++++++.++            .++.+.+|+...............+.....+...+. .+   
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA  161 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE
T ss_pred             ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe
Confidence            2      2456789999999887765            467788888754321110000000000000000000 00   


Q ss_pred             --------------------------------------------------------------EEeecCCcEEEEEccCCc
Q 023772          160 --------------------------------------------------------------IGGSVDGTVRTFDIRVGR  177 (277)
Q Consensus       160 --------------------------------------------------------------~~g~~d~~i~i~d~~~~~  177 (277)
                                                                                    .++..+..+.+||+..+.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (346)
T d1jmxb_         162 GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK  241 (346)
T ss_dssp             SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCC
T ss_pred             CCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCc
Confidence                                                                          111122334445554443


Q ss_pred             ccc---cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEE
Q 023772          178 ELS---DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYF  254 (277)
Q Consensus       178 ~~~---~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~i  254 (277)
                      ...   ......+..+.+++++.+++.... +.+++||..+++.+..+....   ....++++|||+++++|+.|+.|++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~~~---~~~~va~s~DG~~l~v~~~d~~v~v  317 (346)
T d1jmxb_         242 THTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAV  317 (346)
T ss_dssp             EEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEECSS---CCCEEEECSSSSCEEEESBSSEEEE
T ss_pred             eEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEcCCC---CEEEEEEcCCCCEEEEEeCCCcEEE
Confidence            221   122345667788888877776654 579999999999888775321   2456789999999999999999999


Q ss_pred             EECcCccceeeeccCcce
Q 023772          255 WDLVDASVVAKFKAHSLV  272 (277)
Q Consensus       255 wd~~~~~~~~~~~~h~~~  272 (277)
                      ||..+++.+++++.+.+.
T Consensus       318 ~D~~t~~~i~~i~~p~g~  335 (346)
T d1jmxb_         318 FNPDTLEKVKNIKLPGGD  335 (346)
T ss_dssp             EETTTTEEEEEEECSSSC
T ss_pred             EECccCCEEEEEECCCCC
Confidence            999999999999965543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=1e-22  Score=170.93  Aligned_cols=231  Identities=12%  Similarity=0.029  Sum_probs=155.3

Q ss_pred             CEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE-----eecccCce
Q 023772           31 NYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRK-----FRGHESEV  105 (277)
Q Consensus        31 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~-----~~~h~~~v  105 (277)
                      -++++.+.||+|+|||+.+++.+.++..|. .+..++|+|+|+++++++.|+++++||+.+++....     ..+|...+
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~  111 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVE  111 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceE
Confidence            356789999999999999999999999874 689999999999999999999999999998875432     23566677


Q ss_pred             eEEEEecCCCEE-EEEeCCCcEEEEeCccCCCcceEeeccccCcE--EEEEecCCe-EEEeecC-----------CcEEE
Q 023772          106 NAVKFNEYSSVV-VSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSV--MSVCLTKTE-IIGGSVD-----------GTVRT  170 (277)
Q Consensus       106 ~~i~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~g~~d-----------~~i~i  170 (277)
                      .++.|+||++++ +++..++.+++||.......  .....+...+  ..+...+.. .+.++.|           +.+.+
T Consensus       112 ~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~  189 (426)
T d1hzua2         112 SSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK--QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLL  189 (426)
T ss_dssp             ECCSTTCTTTEEEEEEEESSEEEEEETTTCCEE--EEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred             EeeeecCCCCEEEEeecCCCeEEEEcCCcccee--EEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence            778888999986 45558999999998765432  2221111111  111111211 2223333           33444


Q ss_pred             EEccCCccc---ccCCCCCeeEEEEeCCCCEEEEEe-cCCeEEEEECCCCceEEEE------------------------
Q 023772          171 FDIRVGREL---SDDLGQPVNCISMSNDGNCILASC-LDSTLRLLDRSTGELLQEY------------------------  222 (277)
Q Consensus       171 ~d~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~wd~~~~~~~~~~------------------------  222 (277)
                      ++.......   ....+..+..+.|+|++++++++. .+..+.+++..+++.+..+                        
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (426)
T d1hzua2         190 VNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWS  269 (426)
T ss_dssp             EECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEE
T ss_pred             EEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEE
Confidence            443332211   113455678889999998877765 4445677776655443322                        


Q ss_pred             ------------------------------eccccceeeeeeEecCCCceEE-------eecCCCeEEEEECcCccceee
Q 023772          223 ------------------------------KGHICKSFKTDCCLTNSDAHVT-------GGSEDGYIYFWDLVDASVVAK  265 (277)
Q Consensus       223 ------------------------------~~~~~~~~~~~~~~~~~~~~l~-------sgs~d~~i~iwd~~~~~~~~~  265 (277)
                                                    .+|..  .....+++|++++++       +|+.|++|++||+.+++...+
T Consensus       270 ~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~--~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~  347 (426)
T d1hzua2         270 TSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG--GSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQ  347 (426)
T ss_dssp             EECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSS--CCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCE
T ss_pred             eccCCCceEEEeeccccccccccceEeEEEecCCC--ceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeE
Confidence                                          22211  123356899999999       466789999999999988766


Q ss_pred             e
Q 023772          266 F  266 (277)
Q Consensus       266 ~  266 (277)
                      +
T Consensus       348 ~  348 (426)
T d1hzua2         348 V  348 (426)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.91  E-value=5.3e-22  Score=160.10  Aligned_cols=228  Identities=8%  Similarity=0.060  Sum_probs=163.8

Q ss_pred             CEEEEEeCCCcEEEEcCCCCeeEEEEecc--CccEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEEeeccc-----
Q 023772           31 NYCLSCGKDRTIRLWNPHRGIHIKTYKSH--GREVRDVHVTADNSKL-ISCGGDRQIFYWDVSTGRVIRKFRGHE-----  102 (277)
Q Consensus        31 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l-~t~s~d~~v~~wd~~~~~~~~~~~~h~-----  102 (277)
                      +|+++++.|++|+|||+.+++.++++..+  ...+.+++|+|+++++ ++++.++.|.+||+++++.+..+..+.     
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            58999999999999999999999988754  4567899999999987 566789999999999999988876553     


Q ss_pred             CceeEEEEecCCCEEEEEeC------------CCcEEEEeCccCCCcceEeeccccCcEEEEE--ecCCeEEEeecCCcE
Q 023772          103 SEVNAVKFNEYSSVVVSAGY------------DQSLRAWDCRSHSTEPIQIIDSFQDSVMSVC--LTKTEIIGGSVDGTV  168 (277)
Q Consensus       103 ~~v~~i~~~~~~~~l~s~~~------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~d~~i  168 (277)
                      ..+..++++|+++.++.+..            +..+.+||......  ...+.. ...+..+.  .++..+++++  +.+
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~-~~~~~~~~~s~dg~~l~~~~--~~~  156 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR--RKAFEA-PRQITMLAWARDGSKLYGLG--RDL  156 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE--EEEEEC-CSSCCCEEECTTSSCEEEES--SSE
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeE--EEeccc-cCCceEEEEcCCCCEEEEEc--CCc
Confidence            33457899999999888764            56677787765322  111211 12222233  3344455554  345


Q ss_pred             EEEEccCCcccc--------------------------------------------------------------------
Q 023772          169 RTFDIRVGRELS--------------------------------------------------------------------  180 (277)
Q Consensus       169 ~i~d~~~~~~~~--------------------------------------------------------------------  180 (277)
                      .+||..+++...                                                                    
T Consensus       157 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (337)
T d1pbyb_         157 HVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV  236 (337)
T ss_dssp             EEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE
T ss_pred             ceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEe
Confidence            566654332100                                                                    


Q ss_pred             cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCc
Q 023772          181 DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDA  260 (277)
Q Consensus       181 ~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~  260 (277)
                      ......+..+.++|++.+++.+  ++.|++||+.+++.+..+....   .....+++|+|++|++|+.|+.|++||..++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~  311 (337)
T d1pbyb_         237 RIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH---SYYSVNVSTDGSTVWLGGALGDLAAYDAETL  311 (337)
T ss_dssp             EECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS---CCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred             cCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcCCC---CEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            0011224456677888776554  5899999999999988775431   2345679999999999999999999999999


Q ss_pred             cceeeecc
Q 023772          261 SVVAKFKA  268 (277)
Q Consensus       261 ~~~~~~~~  268 (277)
                      +.+++++-
T Consensus       312 ~~v~~i~~  319 (337)
T d1pbyb_         312 EKKGQVDL  319 (337)
T ss_dssp             CEEEEEEC
T ss_pred             cEEEEEEC
Confidence            99998874

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=6.9e-21  Score=159.91  Aligned_cols=257  Identities=12%  Similarity=0.022  Sum_probs=168.9

Q ss_pred             cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeE--EEE---eccCccEEEEEEcCCCCEE-EEEeCCCcE
Q 023772           11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHI--KTY---KSHGREVRDVHVTADNSKL-ISCGGDRQI   84 (277)
Q Consensus        11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~--~~~---~~h~~~v~~~~~~~~~~~l-~t~s~d~~v   84 (277)
                      ...+..|. .+..++|+|||+++++++.|+++++||+.+++..  ..+   ..|.+.+.+..|+|++++| ++++.++++
T Consensus        55 ~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v  133 (432)
T d1qksa2          55 KTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQY  133 (432)
T ss_dssp             EEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEE
T ss_pred             EEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeE
Confidence            44455664 5899999999999999999999999999887632  333   3455666777788999986 678889999


Q ss_pred             EEEECCCCceeEEeecc-----------cCceeEEEEecCCCEE-EEEeCCCcEEEEeCccCCCcceEeeccccCcEEEE
Q 023772           85 FYWDVSTGRVIRKFRGH-----------ESEVNAVKFNEYSSVV-VSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSV  152 (277)
Q Consensus        85 ~~wd~~~~~~~~~~~~h-----------~~~v~~i~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  152 (277)
                      ++||.++++++..+..|           ......+.+++++..+ ++...++.|.+||........+..+. .......+
T Consensus       134 ~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~-~g~~~~~~  212 (432)
T d1qksa2         134 VIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDG  212 (432)
T ss_dssp             EEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEE
T ss_pred             EEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEc-ccCccccc
Confidence            99999999988777643           3445677888888764 56677899999997654332222222 22334445


Q ss_pred             EecC--CeEEEeec-CCcEEEEEccCCccccc----------------------------------------------CC
Q 023772          153 CLTK--TEIIGGSV-DGTVRTFDIRVGRELSD----------------------------------------------DL  183 (277)
Q Consensus       153 ~~~~--~~~~~g~~-d~~i~i~d~~~~~~~~~----------------------------------------------~~  183 (277)
                      .+++  ..+++++. ++.+.++|....+....                                              .+
T Consensus       213 ~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~  292 (432)
T d1qksa2         213 GLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDN  292 (432)
T ss_dssp             EECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTT
T ss_pred             eECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccccccccc
Confidence            5544  44554443 45677777654321100                                              00


Q ss_pred             CCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCc-------eEEEEeccc-----------------------cceeeee
Q 023772          184 GQPVNCISMSNDGNCILASCLDSTLRLLDRSTGE-------LLQEYKGHI-----------------------CKSFKTD  233 (277)
Q Consensus       184 ~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~-------~~~~~~~~~-----------------------~~~~~~~  233 (277)
                      ...+....++|++..+++++.++..++|+..+..       .+....+..                       .......
T Consensus       293 ~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~~~~l~~~~~~v~~  372 (432)
T d1qksa2         293 AWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQ  372 (432)
T ss_dssp             BTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEE
T ss_pred             ccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEEEechhhcccccCCceEecccccccccCCCCCcEEE
Confidence            1134555677777777777777777777643321       111111110                       0112345


Q ss_pred             eEecCCCceEEee-----cCCCeEEEEECcCccceeeeccC
Q 023772          234 CCLTNSDAHVTGG-----SEDGYIYFWDLVDASVVAKFKAH  269 (277)
Q Consensus       234 ~~~~~~~~~l~sg-----s~d~~i~iwd~~~~~~~~~~~~h  269 (277)
                      ..|+|||+++..+     ..||.|+|||..++++.+.+++.
T Consensus       373 ~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~  413 (432)
T d1qksa2         373 GEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDE  413 (432)
T ss_dssp             EEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred             eEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEeEecCC
Confidence            6799999987543     35789999999999999888774

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.88  E-value=1.4e-19  Score=143.56  Aligned_cols=231  Identities=13%  Similarity=0.157  Sum_probs=172.0

Q ss_pred             EEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEEeecccCceeEEEEec
Q 023772           34 LSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKL-ISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNE  112 (277)
Q Consensus        34 ~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~  112 (277)
                      ++.+.|++|++||+.+++.++++... ..+..++|+|++++| ++++.+++|++||+++++.+.++..+.. +..+.+++
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~   83 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVSP   83 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEECT
T ss_pred             EEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-cccccccc
Confidence            46788999999999999999998754 457899999999987 5677899999999999999999887764 57799999


Q ss_pred             CCCEE-EEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec--CCe-EEEeecCCcEEEEEccCCccccc-CCCCCe
Q 023772          113 YSSVV-VSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT--KTE-IIGGSVDGTVRTFDIRVGRELSD-DLGQPV  187 (277)
Q Consensus       113 ~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~g~~d~~i~i~d~~~~~~~~~-~~~~~v  187 (277)
                      ++..+ +++..++.+.+|+.....  ....+.. ......+.++  +.. ++++..++.+.+|+..+...... .....+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (301)
T d1l0qa2          84 DGKQVYVTNMASSTLSVIDTTSNT--VAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSP  160 (301)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTE--EEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSE
T ss_pred             ccccccccccccceeeecccccce--eeeeccc-cccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCc
Confidence            98855 455677889999987543  2222332 2333444454  444 45666788899999988765543 234568


Q ss_pred             eEEEEeCCCCEEEEEecC-CeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEee---cCCCeEEEEECcCccce
Q 023772          188 NCISMSNDGNCILASCLD-STLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGG---SEDGYIYFWDLVDASVV  263 (277)
Q Consensus       188 ~~~~~s~~~~~l~~~~~d-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg---s~d~~i~iwd~~~~~~~  263 (277)
                      ..+.++|++..++++..+ +.+.+|+....+....+..+.   ......+++++..++.+   ..++.|++||..+++++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~  237 (301)
T d1l0qa2         161 KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA---APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT  237 (301)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS---EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE
T ss_pred             eEEEeeccccceeeecccccccccccccceeeeecccccC---CcceeeccccccccccccccceeeeeeeeecCCCeEE
Confidence            899999999988877665 567788888777776665442   23445678888876543   45678999999999999


Q ss_pred             eeeccCcce
Q 023772          264 AKFKAHSLV  272 (277)
Q Consensus       264 ~~~~~h~~~  272 (277)
                      ..+..+..+
T Consensus       238 ~~~~~~~~~  246 (301)
T d1l0qa2         238 ARIPVGPDP  246 (301)
T ss_dssp             EEEECCSSE
T ss_pred             EEEcCCCCE
Confidence            888765443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.87  E-value=3.8e-19  Score=145.74  Aligned_cols=251  Identities=7%  Similarity=-0.054  Sum_probs=164.7

Q ss_pred             eccCCcEEEEEEeCCCCEEEEE-----eCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEe----------
Q 023772           15 KGHEGAVLAARFNGDGNYCLSC-----GKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCG----------   79 (277)
Q Consensus        15 ~~H~~~V~~~~~~~~~~~l~s~-----s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s----------   79 (277)
                      .+|.+++..++++|||+.++..     +.++.+.+||..+++.+.++..+..+  .++|+|++++|++++          
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~   94 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGK   94 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccc
Confidence            4699999999999999988754     34467999999999999998876544  799999999998875          


Q ss_pred             CCCcEEEEECCCCceeEEeecccCc-----------------------------------------------eeEEEEec
Q 023772           80 GDRQIFYWDVSTGRVIRKFRGHESE-----------------------------------------------VNAVKFNE  112 (277)
Q Consensus        80 ~d~~v~~wd~~~~~~~~~~~~h~~~-----------------------------------------------v~~i~~~~  112 (277)
                      .++.|.+||+.+++++..+..+...                                               ..++.+++
T Consensus        95 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  174 (373)
T d2madh_          95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHP  174 (373)
T ss_pred             cceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEec
Confidence            4578999999998876554333221                                               12233444


Q ss_pred             CCCE-EEEEeCCCcEEEEeCccCCCcceEeecc----ccCcEEEEEecCC-eEEEeecCCcEEEEEccCCccccc----C
Q 023772          113 YSSV-VVSAGYDQSLRAWDCRSHSTEPIQIIDS----FQDSVMSVCLTKT-EIIGGSVDGTVRTFDIRVGRELSD----D  182 (277)
Q Consensus       113 ~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~g~~d~~i~i~d~~~~~~~~~----~  182 (277)
                      +++. +++.+.|+++.+|+..............    .........+.+. .++..+.++.+.+|+.........    .
T Consensus       175 ~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  254 (373)
T d2madh_         175 GAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDA  254 (373)
T ss_pred             CCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeecc
Confidence            4432 3455566666666654332211111000    0011112222332 355667788888888776532110    0


Q ss_pred             ----------CCCCeeEEEEeCCCCEE----------EEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCc-
Q 023772          183 ----------LGQPVNCISMSNDGNCI----------LASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDA-  241 (277)
Q Consensus       183 ----------~~~~v~~~~~s~~~~~l----------~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  241 (277)
                                .......+++++++..+          ++...++.+.+||..+++.+..+....   ....+.++|||+ 
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~---~~~~~a~spDG~~  331 (373)
T d2madh_         255 LSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH---DVDAISVAQDGGP  331 (373)
T ss_pred             ccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCC---CeeEEEECCCCCE
Confidence                      01123345566655543          445667789999999999888775432   234567999998 


Q ss_pred             -eEEeecCCCeEEEEECcCccceeeeccCc
Q 023772          242 -HVTGGSEDGYIYFWDLVDASVVAKFKAHS  270 (277)
Q Consensus       242 -~l~sgs~d~~i~iwd~~~~~~~~~~~~h~  270 (277)
                       ++++++.|+.|++||+.+++.++++++|-
T Consensus       332 ~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g  361 (373)
T d2madh_         332 DLYALSAGTEVLHIYDAGAGDQDQSTVELG  361 (373)
T ss_pred             EEEEEeCCCCeEEEEECCCCCEEEEECCCC
Confidence             45789999999999999999999998663

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=6.8e-20  Score=153.77  Aligned_cols=227  Identities=11%  Similarity=0.021  Sum_probs=156.4

Q ss_pred             EEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--eEE---eecccCcee
Q 023772           32 YCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRV--IRK---FRGHESEVN  106 (277)
Q Consensus        32 ~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~--~~~---~~~h~~~v~  106 (277)
                      ++++.+.|++|+|||..+++.+..+..| ..+..++|+|+++++++++.|+++++||+.+++.  +.+   ...|...+.
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~  112 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET  112 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEE
Confidence            4579999999999999999999999977 4799999999999999999999999999988763  222   335666667


Q ss_pred             EEEEecCCCEE-EEEeCCCcEEEEeCccCCCcceEeec---------cccCcEEEEEecC--Ce-EEEeecCCcEEEEEc
Q 023772          107 AVKFNEYSSVV-VSAGYDQSLRAWDCRSHSTEPIQIID---------SFQDSVMSVCLTK--TE-IIGGSVDGTVRTFDI  173 (277)
Q Consensus       107 ~i~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~---------~~~~~~~~~~~~~--~~-~~~g~~d~~i~i~d~  173 (277)
                      +..|+||++++ ++++.++++++||..+..........         ........+..++  .. +++...++.+.+||.
T Consensus       113 s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~  192 (432)
T d1qksa2         113 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY  192 (432)
T ss_dssp             CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEET
T ss_pred             ecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEc
Confidence            77788999975 77888999999998765432221111         1122233444443  33 456667899999998


Q ss_pred             cCCcccc---cCCCCCeeEEEEeCCCCEEEEEec-CCeEEEEECCCCceEEEEeccc---cceeeeeeEecCCCceEEee
Q 023772          174 RVGRELS---DDLGQPVNCISMSNDGNCILASCL-DSTLRLLDRSTGELLQEYKGHI---CKSFKTDCCLTNSDAHVTGG  246 (277)
Q Consensus       174 ~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~sg  246 (277)
                      ...+...   ...+..+..++|+|+|+++++++. ++.+.++|..+++.+..+....   .............+...++.
T Consensus       193 ~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~  272 (432)
T d1qksa2         193 TDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATS  272 (432)
T ss_dssp             TCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEE
T ss_pred             cCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceeccc
Confidence            7654322   234567889999999998877765 5578899999888776654321   11111122222233333332


Q ss_pred             -cCCCeEEEEECcC
Q 023772          247 -SEDGYIYFWDLVD  259 (277)
Q Consensus       247 -s~d~~i~iwd~~~  259 (277)
                       ..|+.|.+|+...
T Consensus       273 ~lg~~~v~~~~~~~  286 (432)
T d1qksa2         273 HMGDDSVALIGTDP  286 (432)
T ss_dssp             BSSSSEEEEEECCT
T ss_pred             ccCCceEEeccccc
Confidence             2366777776554

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=5.3e-20  Score=148.17  Aligned_cols=205  Identities=12%  Similarity=0.121  Sum_probs=150.0

Q ss_pred             cCCcEEEEEEeCCCCEEE-EEeCCCcEEEEcCCCCeeEEEEeccCc-----cEEEEEEcCCCCEEEEEe-----------
Q 023772           17 HEGAVLAARFNGDGNYCL-SCGKDRTIRLWNPHRGIHIKTYKSHGR-----EVRDVHVTADNSKLISCG-----------   79 (277)
Q Consensus        17 H~~~V~~~~~~~~~~~l~-s~s~d~~v~iwd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~t~s-----------   79 (277)
                      +...+..++|+|||++++ +++.|+.|++||+.+++.+..+..+..     .+..++|+|++++++.++           
T Consensus        32 ~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~  111 (337)
T d1pbyb_          32 AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFE  111 (337)
T ss_dssp             CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred             CCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeecc
Confidence            345578999999999874 677899999999999999888876543     355789999999998776           


Q ss_pred             -CCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcce-------------------
Q 023772           80 -GDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPI-------------------  139 (277)
Q Consensus        80 -~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-------------------  139 (277)
                       .+..+.+||..+++....+.. ...+..+.++++++++++++.|  +.+||.........                   
T Consensus       112 ~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (337)
T d1pbyb_         112 VQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAV  188 (337)
T ss_dssp             ECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCC
T ss_pred             ccccceeeccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCccee
Confidence             457899999999998888774 4567789999999999988654  66787653210000                   


Q ss_pred             ---------------------------------Eeec------------cccCcEEEEEecCCeEEEeecCCcEEEEEcc
Q 023772          140 ---------------------------------QIID------------SFQDSVMSVCLTKTEIIGGSVDGTVRTFDIR  174 (277)
Q Consensus       140 ---------------------------------~~~~------------~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~  174 (277)
                                                       ....            .+..........+......+.++.+++||+.
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~  268 (337)
T d1pbyb_         189 WNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLE  268 (337)
T ss_dssp             CCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEESEEEEEETT
T ss_pred             eccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEccccEEEEECC
Confidence                                             0000            0001111112222222223446899999999


Q ss_pred             CCccccc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEec
Q 023772          175 VGRELSD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKG  224 (277)
Q Consensus       175 ~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~  224 (277)
                      +++.+.. ..+..+.+++|+|+|++|++++.|+.|++||.++++.+..+..
T Consensus       269 ~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         269 KNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             TTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             CCcEEEEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence            8876543 3456789999999999999999999999999999999988764

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=2.5e-17  Score=133.65  Aligned_cols=239  Identities=11%  Similarity=0.060  Sum_probs=159.6

Q ss_pred             EEEEeCCCCEEEEE----------eCCCcEEEEcCCCCeeEEEEeccCc-------cEEEEEEcCCCCEEEEEe--CCCc
Q 023772           23 AARFNGDGNYCLSC----------GKDRTIRLWNPHRGIHIKTYKSHGR-------EVRDVHVTADNSKLISCG--GDRQ   83 (277)
Q Consensus        23 ~~~~~~~~~~l~s~----------s~d~~v~iwd~~~~~~~~~~~~h~~-------~v~~~~~~~~~~~l~t~s--~d~~   83 (277)
                      .++|+|||++|+.+          +.|+.|++||..+++.+..+..+..       ....+.|++++++++.++  .+..
T Consensus        51 ~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~  130 (355)
T d2bbkh_          51 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA  130 (355)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred             ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCce
Confidence            68999999988764          3478999999999998887765432       235679999999887764  5678


Q ss_pred             EEEEECCCCceeEEeecccCc-------eeEEEEecCCCEEEEE-eCCCcEEEEeCccCCCcceEeeccccCcEEEEEec
Q 023772           84 IFYWDVSTGRVIRKFRGHESE-------VNAVKFNEYSSVVVSA-GYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT  155 (277)
Q Consensus        84 v~~wd~~~~~~~~~~~~h~~~-------v~~i~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  155 (277)
                      +.+|+..+++.+..+..+...       ...+.++++++.++.. ..++.+.+++.........     ...........
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  205 (355)
T d2bbkh_         131 VGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDE-----FLINHPAYSQK  205 (355)
T ss_dssp             EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTS-----CBCSCCEEETT
T ss_pred             eeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceec-----ceeeeccccCC
Confidence            999999999988777644321       1223344444433322 2223333333222111000     00011123334


Q ss_pred             CCeEEEeecCCcEEEEEccCCcccccC--------------CCCCeeEEEEeCCCCEEEEEecC----------CeEEEE
Q 023772          156 KTEIIGGSVDGTVRTFDIRVGRELSDD--------------LGQPVNCISMSNDGNCILASCLD----------STLRLL  211 (277)
Q Consensus       156 ~~~~~~g~~d~~i~i~d~~~~~~~~~~--------------~~~~v~~~~~s~~~~~l~~~~~d----------~~i~~w  211 (277)
                      +..++.++.++.+.+|++..+......              .......+++++++..++....+          ..|++|
T Consensus       206 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~  285 (355)
T d2bbkh_         206 AGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVL  285 (355)
T ss_dssp             TTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEE
T ss_pred             CCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEE
Confidence            556788889999999998766432110              01223458899999988776544          369999


Q ss_pred             ECCCCceEEEEeccccceeeeeeEecCCCc--eEEeecCCCeEEEEECcCccceeeeccC
Q 023772          212 DRSTGELLQEYKGHICKSFKTDCCLTNSDA--HVTGGSEDGYIYFWDLVDASVVAKFKAH  269 (277)
Q Consensus       212 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h  269 (277)
                      |..+++.+..+...   .....+.++|||+  ++++++.|+.|++||..+++++++++++
T Consensus       286 d~~t~~~~~~~~~~---~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~  342 (355)
T d2bbkh_         286 DAKTGERLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL  342 (355)
T ss_dssp             ETTTCCEEEEEEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred             eCCCCcEEEEecCC---CCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCc
Confidence            99999988877643   2245567899987  4567888999999999999999999864

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=1.1e-17  Score=134.54  Aligned_cols=236  Identities=10%  Similarity=0.128  Sum_probs=138.2

Q ss_pred             EEEEEeCCCcEEEEcCCCCeeEE--EEeccCccEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeEEee---cccCce
Q 023772           32 YCLSCGKDRTIRLWNPHRGIHIK--TYKSHGREVRDVHVTADNSKLISC-GGDRQIFYWDVSTGRVIRKFR---GHESEV  105 (277)
Q Consensus        32 ~l~s~s~d~~v~iwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~t~-s~d~~v~~wd~~~~~~~~~~~---~h~~~v  105 (277)
                      .+++++.|++|++|++.+...+.  ....|.+.+..++|+|++++|+++ ..|+.|++|++.......++.   .+...+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            34688899999999986543322  233578899999999999998555 558999999998664332222   234556


Q ss_pred             eEEEEecCCCEEEEEeC-CCcEEEEeCccCCCcceEeeccccCcEEEEEe--cCCeEEEe--------------------
Q 023772          106 NAVKFNEYSSVVVSAGY-DQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCL--TKTEIIGG--------------------  162 (277)
Q Consensus       106 ~~i~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g--------------------  162 (277)
                      ..++++|++++++.++. ++.+.+|+..............+...+..+.+  +++.++.+                    
T Consensus        86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~  165 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA  165 (333)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred             eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCccee
Confidence            77999999999888875 67888887654322111111111111111111  11222221                    


Q ss_pred             ------------------------------ecCCcEEEEEccCCccc-------c---c--CCCCCeeEEEEeCCCCEEE
Q 023772          163 ------------------------------SVDGTVRTFDIRVGREL-------S---D--DLGQPVNCISMSNDGNCIL  200 (277)
Q Consensus       163 ------------------------------~~d~~i~i~d~~~~~~~-------~---~--~~~~~v~~~~~s~~~~~l~  200 (277)
                                                    ...+...+|+.......       .   .  ........+.+++++++++
T Consensus       166 ~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~  245 (333)
T d1ri6a_         166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLY  245 (333)
T ss_dssp             EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred             eeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCcee
Confidence                                          12223333332211100       0   0  0112345678899998765


Q ss_pred             EE-ecCCeEEEEECCCCceEEEEeccc-cceeeeeeEecCCCceEEe-ecCCCeEEEEE--CcCccc--eeeec
Q 023772          201 AS-CLDSTLRLLDRSTGELLQEYKGHI-CKSFKTDCCLTNSDAHVTG-GSEDGYIYFWD--LVDASV--VAKFK  267 (277)
Q Consensus       201 ~~-~~d~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~s-gs~d~~i~iwd--~~~~~~--~~~~~  267 (277)
                      .. ..++.+.+|++..........++. ........+++|||++|++ ++.++.|++|+  ..+|++  ++++.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~~~~~~~  319 (333)
T d1ri6a_         246 ACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYA  319 (333)
T ss_dssp             EEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEE
T ss_pred             eecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEEEEEecc
Confidence            54 567789999886544333332221 1122345679999998765 45678999995  556654  34454

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.76  E-value=2.7e-16  Score=128.68  Aligned_cols=248  Identities=9%  Similarity=-0.007  Sum_probs=161.5

Q ss_pred             eccCCcEEEEEEeCCCCEEEEEe----------CCCcEEEEcCCCCeeEEEEeccCc-------cEEEEEEcCCCCEEEE
Q 023772           15 KGHEGAVLAARFNGDGNYCLSCG----------KDRTIRLWNPHRGIHIKTYKSHGR-------EVRDVHVTADNSKLIS   77 (277)
Q Consensus        15 ~~H~~~V~~~~~~~~~~~l~s~s----------~d~~v~iwd~~~~~~~~~~~~h~~-------~v~~~~~~~~~~~l~t   77 (277)
                      .++..+  .++|+|||+.|+..+          .|+.|++||..+++.+..+..+..       ....++|+|++++++.
T Consensus        63 ~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~v  140 (368)
T d1mdah_          63 LGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLF  140 (368)
T ss_dssp             EECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEE
T ss_pred             eCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEE
Confidence            344444  488999999888754          478899999999998888765432       2346899999999987


Q ss_pred             Ee-CCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEee----ccccCcEEEE
Q 023772           78 CG-GDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQII----DSFQDSVMSV  152 (277)
Q Consensus        78 ~s-~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----~~~~~~~~~~  152 (277)
                      +. .++.+.+||+++++....+..+.....   .......++..+.||++..+++...........    ..........
T Consensus       141 a~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (368)
T d1mdah_         141 FLFGSSAAAGLSVPGASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA  217 (368)
T ss_dssp             EECSSSCEEEEEETTTEEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE
T ss_pred             EeCCCCeEEEEECCCCcEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeec
Confidence            76 579999999999998888766554322   112234566677788888887654332211110    0111111222


Q ss_pred             EecCCeEEEeecCCcEEEEEccCCccccc--------------CCCCCeeEEEEeCCCCEEEEEecC---------CeEE
Q 023772          153 CLTKTEIIGGSVDGTVRTFDIRVGRELSD--------------DLGQPVNCISMSNDGNCILASCLD---------STLR  209 (277)
Q Consensus       153 ~~~~~~~~~g~~d~~i~i~d~~~~~~~~~--------------~~~~~v~~~~~s~~~~~l~~~~~d---------~~i~  209 (277)
                      ...+...+.....+.+.+++.........              ........++++|++..++....+         ..|+
T Consensus       218 ~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~  297 (368)
T d1mdah_         218 QANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTS  297 (368)
T ss_dssp             EETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEE
T ss_pred             ccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEE
Confidence            33333333334455566666544322110              001123457889998877665322         2589


Q ss_pred             EEECCCCceEEEEeccccceeeeeeEecCCCc--eEEeecCCCeEEEEECcCccceeeeccCc
Q 023772          210 LLDRSTGELLQEYKGHICKSFKTDCCLTNSDA--HVTGGSEDGYIYFWDLVDASVVAKFKAHS  270 (277)
Q Consensus       210 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~  270 (277)
                      +||..+++.+..+...   .......++|||+  +++++..|+.|++||..+++.+++++...
T Consensus       298 v~D~~t~~~~~~~~~~---~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~  357 (368)
T d1mdah_         298 SVTASVGQTSGPISNG---HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK  357 (368)
T ss_dssp             EEESSSCCEEECCEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCS
T ss_pred             EEECCCCcEeEEecCC---CceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCC
Confidence            9999999988776543   2345567899986  34677889999999999999999998543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.74  E-value=1.4e-16  Score=128.17  Aligned_cols=206  Identities=10%  Similarity=0.094  Sum_probs=139.1

Q ss_pred             ccCCcEEEEEEeCCCCEEE-EEeCCCcEEEEcCCCCeeEEEEeccC------ccEEEEEEcCCCCEEEEEe---------
Q 023772           16 GHEGAVLAARFNGDGNYCL-SCGKDRTIRLWNPHRGIHIKTYKSHG------REVRDVHVTADNSKLISCG---------   79 (277)
Q Consensus        16 ~H~~~V~~~~~~~~~~~l~-s~s~d~~v~iwd~~~~~~~~~~~~h~------~~v~~~~~~~~~~~l~t~s---------   79 (277)
                      .|...+.+++|+|||++++ +++.++.|++||+.+++.+..+....      ..+..++|+|++++++.++         
T Consensus        37 ~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~  116 (346)
T d1jmxb_          37 PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH  116 (346)
T ss_dssp             SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSC
T ss_pred             CCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeee
Confidence            3566788999999999874 66788999999999999888776432      2356899999999987765         


Q ss_pred             ---CCCcEEEEECCCCceeEEeecc--cCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceE--------------
Q 023772           80 ---GDRQIFYWDVSTGRVIRKFRGH--ESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQ--------------  140 (277)
Q Consensus        80 ---~d~~v~~wd~~~~~~~~~~~~h--~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--------------  140 (277)
                         .+..+.+||..+++....+..+  ...+..+.+.+++.++++   ++.+.+|+..+.......              
T Consensus       117 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (346)
T d1jmxb_         117 YVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA---GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPD  193 (346)
T ss_dssp             EEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE---SSSEEEECTTTCCEEEEECSTTCCCTTBCCCB
T ss_pred             eccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe---CCcceEEEccCCCEEEEEecCCCccceEEecc
Confidence               4678999999887765444333  334555666666665554   244677775432110000              


Q ss_pred             ----------------------------------------------------eeccccCcEEEEEecC--CeEEEeecCC
Q 023772          141 ----------------------------------------------------IIDSFQDSVMSVCLTK--TEIIGGSVDG  166 (277)
Q Consensus       141 ----------------------------------------------------~~~~~~~~~~~~~~~~--~~~~~g~~d~  166 (277)
                                                                          ....+...+..+...+  ..++. ..++
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  272 (346)
T d1jmxb_         194 VLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY-GVLN  272 (346)
T ss_dssp             CCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEE-EEES
T ss_pred             ccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEE-ecCC
Confidence                                                                0000011111111111  11222 2346


Q ss_pred             cEEEEEccCCccccc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEecc
Q 023772          167 TVRTFDIRVGRELSD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGH  225 (277)
Q Consensus       167 ~i~i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~  225 (277)
                      .+.+||..+++.+.. ..+..+.+++|+|||+++++++.|+.|++||.++++.+.++...
T Consensus       273 ~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p  332 (346)
T d1jmxb_         273 RLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  332 (346)
T ss_dssp             EEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             eEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECC
Confidence            799999988775543 34567999999999999999999999999999999999888743

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.71  E-value=1.2e-14  Score=118.43  Aligned_cols=210  Identities=14%  Similarity=0.101  Sum_probs=134.5

Q ss_pred             eeccCCcEEEEEEeCCCCEEEEEe----------CCCcEEEEcCCCCeeEEEEeccC-----------------------
Q 023772           14 LKGHEGAVLAARFNGDGNYCLSCG----------KDRTIRLWNPHRGIHIKTYKSHG-----------------------   60 (277)
Q Consensus        14 l~~H~~~V~~~~~~~~~~~l~s~s----------~d~~v~iwd~~~~~~~~~~~~h~-----------------------   60 (277)
                      +.++..+  .+.|+|||++++.++          .++.|++||..+++.+..+..+.                       
T Consensus        63 ~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~  140 (373)
T d2madh_          63 VNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLL  140 (373)
T ss_pred             EeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEE
Confidence            3444433  689999999999875          45789999998877654433221                       


Q ss_pred             ------------------------ccEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCceeEEeeccc------CceeEEE
Q 023772           61 ------------------------REVRDVHVTADNSK-LISCGGDRQIFYWDVSTGRVIRKFRGHE------SEVNAVK  109 (277)
Q Consensus        61 ------------------------~~v~~~~~~~~~~~-l~t~s~d~~v~~wd~~~~~~~~~~~~h~------~~v~~i~  109 (277)
                                              ....++.++++++. +++.+.|+++.+|+..+++.......+.      .......
T Consensus       141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (373)
T d2madh_         141 FFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQ  220 (373)
T ss_pred             EEEEcCCCceEEeeccCCeEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEE
Confidence                                    12234456666654 3567788888888888777665543321      1122333


Q ss_pred             EecCCCEEEEEeCCCcEEEEeCccCCCcceEeecccc----------Cc--EEEEEe----------cCCeEEEeecCCc
Q 023772          110 FNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQ----------DS--VMSVCL----------TKTEIIGGSVDGT  167 (277)
Q Consensus       110 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~----------~~--~~~~~~----------~~~~~~~g~~d~~  167 (277)
                      +.+++ .++..+.++.+.+|+................          ..  ......          ....++....++.
T Consensus       221 ~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  299 (373)
T d2madh_         221 ANKSG-RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKE  299 (373)
T ss_pred             ECCCc-eEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCe
Confidence            44444 4556678899999987654321111111100          00  111111          1223456667788


Q ss_pred             EEEEEccCCccccc-CCCCCeeEEEEeCCCCE--EEEEecCCeEEEEECCCCceEEEEeccc
Q 023772          168 VRTFDIRVGRELSD-DLGQPVNCISMSNDGNC--ILASCLDSTLRLLDRSTGELLQEYKGHI  226 (277)
Q Consensus       168 i~i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~--l~~~~~d~~i~~wd~~~~~~~~~~~~~~  226 (277)
                      +.+||..+++.+.. ..+..+..++|+|||+.  +++++.|+.|++||..+++.++.+.++.
T Consensus       300 v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g  361 (373)
T d2madh_         300 VTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELG  361 (373)
T ss_pred             EEEEECCCCcEEEEecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCC
Confidence            99999988876543 34567899999999984  4678999999999999999999987653

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=2.2e-14  Score=114.78  Aligned_cols=204  Identities=6%  Similarity=0.049  Sum_probs=133.8

Q ss_pred             ccCCcEEEEEEeCCCCEEEE-EeCCCcEEEEcCCCCeeEEEE---eccCccEEEEEEcCCCCEEEEEeC-CCcEEEEECC
Q 023772           16 GHEGAVLAARFNGDGNYCLS-CGKDRTIRLWNPHRGIHIKTY---KSHGREVRDVHVTADNSKLISCGG-DRQIFYWDVS   90 (277)
Q Consensus        16 ~H~~~V~~~~~~~~~~~l~s-~s~d~~v~iwd~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~t~s~-d~~v~~wd~~   90 (277)
                      .|.+.|..++|+|||++|++ +..|+.|++|++.......++   ..+...+..++|+|++++|++++. ++++.+|+.+
T Consensus        34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~  113 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE  113 (333)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccc
Confidence            68899999999999999965 456899999998765332222   234456788999999999988875 6789999887


Q ss_pred             CCceeE--EeecccCceeEEEEecCCCEEEEEeC-CCcEEEEeCccCCCcce----------------Eeeccc------
Q 023772           91 TGRVIR--KFRGHESEVNAVKFNEYSSVVVSAGY-DQSLRAWDCRSHSTEPI----------------QIIDSF------  145 (277)
Q Consensus        91 ~~~~~~--~~~~h~~~v~~i~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~----------------~~~~~~------  145 (277)
                      ......  ....+...+.++.++++++.++.++. +..+.+|+.........                ..+...      
T Consensus       114 ~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~  193 (333)
T d1ri6a_         114 DGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYC  193 (333)
T ss_dssp             TTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEE
T ss_pred             cccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEe
Confidence            665433  34456677888999999998877764 45688887643211000                000000      


Q ss_pred             -----------------------------------cCcEEEEEec--CCe-EEEeecCCcEEEEEccCCcccc-----cC
Q 023772          146 -----------------------------------QDSVMSVCLT--KTE-IIGGSVDGTVRTFDIRVGRELS-----DD  182 (277)
Q Consensus       146 -----------------------------------~~~~~~~~~~--~~~-~~~g~~d~~i~i~d~~~~~~~~-----~~  182 (277)
                                                         ........++  ++. ++.+..++.+.+|++.......     ..
T Consensus       194 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (333)
T d1ri6a_         194 VNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP  273 (333)
T ss_dssp             EETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE
T ss_pred             eccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeC
Confidence                                               0001111122  222 3445567788899876543221     12


Q ss_pred             CCCCeeEEEEeCCCCEEEEEe-cCCeEEEE--ECCCCceE
Q 023772          183 LGQPVNCISMSNDGNCILASC-LDSTLRLL--DRSTGELL  219 (277)
Q Consensus       183 ~~~~v~~~~~s~~~~~l~~~~-~d~~i~~w--d~~~~~~~  219 (277)
                      .+..+..++|+|+|++|++++ .++.|++|  |.++|++.
T Consensus       274 ~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~  313 (333)
T d1ri6a_         274 TETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLH  313 (333)
T ss_dssp             CSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEE
T ss_pred             CCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEE
Confidence            334577899999999887765 56889998  55677653

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.67  E-value=6.2e-15  Score=119.28  Aligned_cols=244  Identities=9%  Similarity=-0.006  Sum_probs=158.5

Q ss_pred             EEEEEEeCCCCEEEEE-----eCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEe----------CCCcEE
Q 023772           21 VLAARFNGDGNYCLSC-----GKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCG----------GDRQIF   85 (277)
Q Consensus        21 V~~~~~~~~~~~l~s~-----s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s----------~d~~v~   85 (277)
                      +.-.+.+|||+.++..     ..+..+.+||..+++.+.++..+..+  .++|+|++++|+.++          .|+.|+
T Consensus         4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~   81 (355)
T d2bbkh_           4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVE   81 (355)
T ss_dssp             CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             cEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEE
Confidence            3334557999988754     34567999999999999988866444  799999999887643          478999


Q ss_pred             EEECCCCceeEEeecccC-------ceeEEEEecCCCEEEEEe--CCCcEEEEeCccCCCcceEeeccccCcEEEEEecC
Q 023772           86 YWDVSTGRVIRKFRGHES-------EVNAVKFNEYSSVVVSAG--YDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK  156 (277)
Q Consensus        86 ~wd~~~~~~~~~~~~h~~-------~v~~i~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (277)
                      +||+++++.+..+..+..       ....+.|+++++.++.++  .+..+.+|+......  ...+... .........+
T Consensus        82 v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~  158 (355)
T d2bbkh_          82 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF--KRMLDVP-DCYHIFPTAP  158 (355)
T ss_dssp             EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE--EEEEECC-SEEEEEEEET
T ss_pred             EEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcE--eeEEecC-CcceEeecCC
Confidence            999999998877654322       234578999999877764  467889999865432  2222221 1222222334


Q ss_pred             CeEEEeecCCcEEEEEccCCcccc--------cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceE--EEEeccc
Q 023772          157 TEIIGGSVDGTVRTFDIRVGRELS--------DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELL--QEYKGHI  226 (277)
Q Consensus       157 ~~~~~g~~d~~i~i~d~~~~~~~~--------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~--~~~~~~~  226 (277)
                      ...+..+.|+...++.........        ......+....+.+++..++.++.++.+++|++..++..  .....+.
T Consensus       159 ~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  238 (355)
T d2bbkh_         159 DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALT  238 (355)
T ss_dssp             TEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSC
T ss_pred             cceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcc
Confidence            444555666666555543322110        111223555678888888999999999999999877542  2222221


Q ss_pred             cc--------eeeeeeEecCCCceEEeecC----------CCeEEEEECcCccceeeeccC
Q 023772          227 CK--------SFKTDCCLTNSDAHVTGGSE----------DGYIYFWDLVDASVVAKFKAH  269 (277)
Q Consensus       227 ~~--------~~~~~~~~~~~~~~l~sgs~----------d~~i~iwd~~~~~~~~~~~~h  269 (277)
                      ..        .......+++++..++..+.          ++.|++||..+++.+.+++.+
T Consensus       239 ~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~  299 (355)
T d2bbkh_         239 EAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG  299 (355)
T ss_dssp             HHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred             cceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCC
Confidence            10        01122456777777665432          247999999999998887743

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.45  E-value=1.1e-11  Score=104.15  Aligned_cols=115  Identities=10%  Similarity=0.052  Sum_probs=88.6

Q ss_pred             eeeccCCcEEEEEEeCCCCEEEEEeC---------CCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCc
Q 023772           13 VLKGHEGAVLAARFNGDGNYCLSCGK---------DRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQ   83 (277)
Q Consensus        13 ~l~~H~~~V~~~~~~~~~~~l~s~s~---------d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~   83 (277)
                      .+..|...|.++.|||||++|+.++.         ++.+.+||+.+++ ...+..|...+....|+|+|++|+.. .++.
T Consensus        56 ~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~  133 (470)
T d2bgra1          56 TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYV-WNND  133 (470)
T ss_dssp             TTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEE-ETTE
T ss_pred             hhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCc-ccccccCCccccccccccCcceeeEe-eccc
Confidence            34567788999999999999998753         5778899999886 45677788899999999999999986 4678


Q ss_pred             EEEEECCCCceeEEeec------------------ccCceeEEEEecCCCEEEEEeCCCc-EEEE
Q 023772           84 IFYWDVSTGRVIRKFRG------------------HESEVNAVKFNEYSSVVVSAGYDQS-LRAW  129 (277)
Q Consensus        84 v~~wd~~~~~~~~~~~~------------------h~~~v~~i~~~~~~~~l~s~~~d~~-i~iw  129 (277)
                      +.+|+..+++..+....                  .......+.|+||++.|+....|.+ +..|
T Consensus       134 l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~  198 (470)
T d2bgra1         134 IYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLI  198 (470)
T ss_dssp             EEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEE
T ss_pred             ceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceE
Confidence            99999988876543321                  1233456789999999999876544 4433

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.41  E-value=6.5e-12  Score=103.32  Aligned_cols=232  Identities=13%  Similarity=0.060  Sum_probs=148.3

Q ss_pred             ccCCcEEEEEEeCCCCEEEE-EeCCCcEEEEcCCCCeeEEEEe-ccCccEEEEEEcCCCCE--EEEEeCCC---------
Q 023772           16 GHEGAVLAARFNGDGNYCLS-CGKDRTIRLWNPHRGIHIKTYK-SHGREVRDVHVTADNSK--LISCGGDR---------   82 (277)
Q Consensus        16 ~H~~~V~~~~~~~~~~~l~s-~s~d~~v~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~--l~t~s~d~---------   82 (277)
                      .|.-......+.|||++|+. ...+..|.++|+.+++....+. .+...+..++|+|++++  ++..+.+.         
T Consensus        69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~  148 (441)
T d1qnia2          69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTD  148 (441)
T ss_dssp             BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSC
T ss_pred             ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccc
Confidence            35555666777899999865 4678899999999998887765 35678999999998874  44333331         


Q ss_pred             --------cEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCc-----------------------------
Q 023772           83 --------QIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQS-----------------------------  125 (277)
Q Consensus        83 --------~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~-----------------------------  125 (277)
                              .+..+|.++.+...++... .....+.++|++++++..+.+..                             
T Consensus       149 ~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~  227 (441)
T d1qnia2         149 FSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVK  227 (441)
T ss_dssp             CCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHH
T ss_pred             cccccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEec
Confidence                    2355888888877766543 34567999999999888765431                             


Q ss_pred             ------------EEEEeCccCCCcceEeeccccC-cEEEEEecCCe-EEEeecCCcEEEEEccCCcccccC---------
Q 023772          126 ------------LRAWDCRSHSTEPIQIIDSFQD-SVMSVCLTKTE-IIGGSVDGTVRTFDIRVGRELSDD---------  182 (277)
Q Consensus       126 ------------i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~g~~d~~i~i~d~~~~~~~~~~---------  182 (277)
                                  +.+++....  ..+..+..... .-..+.+++.+ ++++..++++.+||+.+..+....         
T Consensus       228 dGk~~~v~~~~v~vvd~~~~~--~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~  305 (441)
T d1qnia2         228 AGNFKTIGDSKVPVVDGRGES--EFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIV  305 (441)
T ss_dssp             TTCCBCCTTCCCCEEECSSSC--SSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEE
T ss_pred             CCCEEEeCCCCcEEEEcccCC--ceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEE
Confidence                        111111110  01111111100 01233445555 467888999999999764432111         


Q ss_pred             ----CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCC----------CceEEEE-----eccccceeeeeeEecCCCceE
Q 023772          183 ----LGQPVNCISMSNDGNCILASCLDSTLRLLDRST----------GELLQEY-----KGHICKSFKTDCCLTNSDAHV  243 (277)
Q Consensus       183 ----~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~----------~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l  243 (277)
                          .+--....+|+++|..+.+.+.|..|..|++..          ...+..+     .||...  ....+++|+|+||
T Consensus       306 ~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~--~~~~t~~pdGk~l  383 (441)
T d1qnia2         306 AEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHA--SLTESRDADGKWL  383 (441)
T ss_dssp             ECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEE--TTTTSTTCCCCEE
T ss_pred             eecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCcc--ccccccCCCCcEE
Confidence                111235568999998888889999999999731          1234444     355322  2334578999999


Q ss_pred             Eee---cCCCeE
Q 023772          244 TGG---SEDGYI  252 (277)
Q Consensus       244 ~sg---s~d~~i  252 (277)
                      +++   |.|+.+
T Consensus       384 ~s~~k~s~dr~~  395 (441)
T d1qnia2         384 VVLSKFSKDRFL  395 (441)
T ss_dssp             EEEESCCGGGSC
T ss_pred             EecCccccccCc
Confidence            999   667543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.39  E-value=9.7e-12  Score=101.14  Aligned_cols=247  Identities=9%  Similarity=-0.083  Sum_probs=156.4

Q ss_pred             ccCCcEEEEEEeCCCCEE---EEEeCCCc--EEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEe----------C
Q 023772           16 GHEGAVLAARFNGDGNYC---LSCGKDRT--IRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCG----------G   80 (277)
Q Consensus        16 ~H~~~V~~~~~~~~~~~l---~s~s~d~~--v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s----------~   80 (277)
                      .+.++...++..++++..   ++...+++  +.+||..+++.+.+...+..+  .++|+|+++.|+.++          .
T Consensus        17 ~~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~   94 (368)
T d1mdah_          17 ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKR   94 (368)
T ss_dssp             CCCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSE
T ss_pred             ccCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCcccccccc
Confidence            456666666777888743   23455565  555599999999988877655  589999999988754          3


Q ss_pred             CCcEEEEECCCCceeEEeecccC-------ceeEEEEecCCCEEEEEe-CCCcEEEEeCccCCCcceEeeccccCcEEEE
Q 023772           81 DRQIFYWDVSTGRVIRKFRGHES-------EVNAVKFNEYSSVVVSAG-YDQSLRAWDCRSHSTEPIQIIDSFQDSVMSV  152 (277)
Q Consensus        81 d~~v~~wd~~~~~~~~~~~~h~~-------~v~~i~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  152 (277)
                      |+.|.+||..+++++..+..+..       ....+.|+||+++++.++ .++.+.+||+.....  .......... ...
T Consensus        95 d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~--~~~~~~~~~~-~~~  171 (368)
T d1mdah_          95 TDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLTKSASCF-HIH  171 (368)
T ss_dssp             EEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEEECSSCC-CCE
T ss_pred             CCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcE--eEEeeccCcc-eEc
Confidence            67899999999998887764322       224589999999988776 579999999876432  2222221111 112


Q ss_pred             EecCCeEEEeecCCcEEEEEccCCcccc--------cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEE--
Q 023772          153 CLTKTEIIGGSVDGTVRTFDIRVGRELS--------DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEY--  222 (277)
Q Consensus       153 ~~~~~~~~~g~~d~~i~i~d~~~~~~~~--------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~--  222 (277)
                      ...+..++..+.||.+.++++.......        ......+....+.+++..+.+  .++.+++++...+......  
T Consensus       172 ~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~v~~~~~~~~~~~~~~~~  249 (368)
T d1mdah_         172 PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA--VASSILQGDIPAAGATMKAAI  249 (368)
T ss_dssp             EEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC--BSSCCEEEECCSSCCEEECCC
T ss_pred             cCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEe--cCCCEEEEeecCCceEEEeec
Confidence            2334556777889999999876543221        111223455677777765443  3566777777665443221  


Q ss_pred             ecccc--------ceeeeeeEecCCCceEEeec---------CCCeEEEEECcCccceeeeccC
Q 023772          223 KGHIC--------KSFKTDCCLTNSDAHVTGGS---------EDGYIYFWDLVDASVVAKFKAH  269 (277)
Q Consensus       223 ~~~~~--------~~~~~~~~~~~~~~~l~sgs---------~d~~i~iwd~~~~~~~~~~~~h  269 (277)
                      ..+..        ..-.....+++++..++...         ....|++||..+++.+..+...
T Consensus       250 ~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~  313 (368)
T d1mdah_         250 DGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG  313 (368)
T ss_dssp             CSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE
T ss_pred             ccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCC
Confidence            11100        00011235667766654431         2246999999999988877643

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.38  E-value=5.5e-10  Score=88.21  Aligned_cols=224  Identities=7%  Similarity=-0.034  Sum_probs=148.8

Q ss_pred             cEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-eEEe
Q 023772           20 AVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRV-IRKF   98 (277)
Q Consensus        20 ~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~-~~~~   98 (277)
                      .+..+++++||+++++...+++|..|+....  ...+......+.+++|.++++.+++...++.+..|+...... ...+
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence            4789999999999999999999999986543  344555667899999999999999888888888887654321 1222


Q ss_pred             e--cccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEe--------eccccCcEEEEEecCCe-EEEeecCCc
Q 023772           99 R--GHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQI--------IDSFQDSVMSVCLTKTE-IIGGSVDGT  167 (277)
Q Consensus        99 ~--~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~-~~~g~~d~~  167 (277)
                      .  ......+.+.+.++++++++.+.++.+..++...........        ..........+.+++.. +++.+..+.
T Consensus       107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~  186 (302)
T d2p4oa1         107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKML  186 (302)
T ss_dssp             EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTE
T ss_pred             cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCe
Confidence            1  234567899999999999988888888888876432111100        01111233445555555 445566788


Q ss_pred             EEEEEccCCcccccC----CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEe---cCCC
Q 023772          168 VRTFDIRVGRELSDD----LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCL---TNSD  240 (277)
Q Consensus       168 i~i~d~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  240 (277)
                      |..++..........    .......++|+++|+++++...++.|..++.. ++................++|   ++|+
T Consensus       187 i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~  265 (302)
T d2p4oa1         187 LLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDC  265 (302)
T ss_dssp             EEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTT
T ss_pred             EEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEEecCCCCCCceEEEEcCCCCCC
Confidence            888887644322111    12345679999999988888889999999875 443333332222223456778   5566


Q ss_pred             ceEEee
Q 023772          241 AHVTGG  246 (277)
Q Consensus       241 ~~l~sg  246 (277)
                      +.|..+
T Consensus       266 ~~Lyvt  271 (302)
T d2p4oa1         266 TAIYVV  271 (302)
T ss_dssp             TEEEEE
T ss_pred             CEEEEE
Confidence            666543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.30  E-value=2e-11  Score=102.47  Aligned_cols=164  Identities=12%  Similarity=0.171  Sum_probs=113.4

Q ss_pred             EEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEec-----cCccEEEEEEcCCCCEEEEEeC---------CCcEEEEE
Q 023772           23 AARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKS-----HGREVRDVHVTADNSKLISCGG---------DRQIFYWD   88 (277)
Q Consensus        23 ~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~l~t~s~---------d~~v~~wd   88 (277)
                      .+.|.++++++..  .|+.+.+||..+++....+..     |...|.+..|+||+++|+.++.         ++.+.+||
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence            5789999988764  578999999999987665543     4577999999999999998753         46788999


Q ss_pred             CCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCCcE
Q 023772           89 VSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTV  168 (277)
Q Consensus        89 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i  168 (277)
                      +++++. ..+..|...+..+.|+||++.++.. .|+.+.+|+......  .+.......         .....|..|   
T Consensus        99 ~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~--~~~t~~~~~---------~~~~~g~~d---  162 (470)
T d2bgra1          99 LNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPS--YRITWTGKE---------DIIYNGITD---  162 (470)
T ss_dssp             TTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCC--EECCSCCBT---------TTEEESBCC---
T ss_pred             CCCCcc-cccccCCccccccccccCcceeeEe-ecccceEEECCCCce--eeeeeccCC---------Ccccccccc---
Confidence            998875 4577888999999999999999985 567899998775432  222111110         001111111   


Q ss_pred             EEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecCCe-EEEEE
Q 023772          169 RTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDST-LRLLD  212 (277)
Q Consensus       169 ~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-i~~wd  212 (277)
                              .............+.|||||++|+....|.+ ++.|+
T Consensus       163 --------~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~  199 (470)
T d2bgra1         163 --------WVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIE  199 (470)
T ss_dssp             --------HHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEE
T ss_pred             --------eeeeeeecCCccccEECCCCCccceeEecCCcCceEE
Confidence                    0001112234456789999999999876544 55444

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.26  E-value=4.7e-08  Score=75.89  Aligned_cols=236  Identities=13%  Similarity=0.197  Sum_probs=153.0

Q ss_pred             cEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEecc------CccEEEEEEcCCCC-EEEEE-eCCCcEEEEECCC
Q 023772           20 AVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSH------GREVRDVHVTADNS-KLISC-GGDRQIFYWDVST   91 (277)
Q Consensus        20 ~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h------~~~v~~~~~~~~~~-~l~t~-s~d~~v~~wd~~~   91 (277)
                      .-..++++++|+++++-...+.|++||.. |+.+..+...      ......+++..+.. .+++. +.++.|..++. .
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-Y  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-T
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-c
Confidence            35789999999988887778899999965 6777666321      11245566555544 44433 44567777775 4


Q ss_pred             CceeEEeec-ccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEee--ccccCcEEEEEecCC--eEEEeecCC
Q 023772           92 GRVIRKFRG-HESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQII--DSFQDSVMSVCLTKT--EIIGGSVDG  166 (277)
Q Consensus        92 ~~~~~~~~~-h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~g~~d~  166 (277)
                      ++....+.. .......+++.+++.++++....+.+.+++....   .+..+  .........+..+++  .+++....+
T Consensus       102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~---~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~  178 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN---VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAH  178 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC---EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGT
T ss_pred             ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCc---eeecccccccccccceeeeccceeEEeeecccc
Confidence            566655542 3455678999999998888888888888875432   12222  222333444554443  355666678


Q ss_pred             cEEEEEccCCcc--ccc-CCCCCeeEEEEeCCCCEEEEEec-CCeEEEEECCCCceEEEEeccccceeeeeeEecCCCce
Q 023772          167 TVRTFDIRVGRE--LSD-DLGQPVNCISMSNDGNCILASCL-DSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAH  242 (277)
Q Consensus       167 ~i~i~d~~~~~~--~~~-~~~~~v~~~~~s~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (277)
                      .|.+||......  +.. ........++++++|+.+++-.. ++.|.+|+. +|+.+..+............++.++|.+
T Consensus       179 ~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l  257 (279)
T d1q7fa_         179 CVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSV  257 (279)
T ss_dssp             EEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEE
T ss_pred             ceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCcE
Confidence            899998653221  111 12235788999999997777544 457999985 5888877764433333455678888876


Q ss_pred             EEeecCCCeEEEEECcCccc
Q 023772          243 VTGGSEDGYIYFWDLVDASV  262 (277)
Q Consensus       243 l~sgs~d~~i~iwd~~~~~~  262 (277)
                      +++ +.++.|++|.......
T Consensus       258 ~V~-~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         258 VLA-SKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             EEE-ETTTEEEEEECSCCCC
T ss_pred             EEE-eCCCeEEEEEeeeecC
Confidence            655 5688999999876543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.26  E-value=3.3e-10  Score=93.01  Aligned_cols=225  Identities=9%  Similarity=-0.001  Sum_probs=132.3

Q ss_pred             EEEEeCCCcEEEEcCCCCeeEEEEec------------------------------cCccEEEEEEcCCCCEEEEE-eCC
Q 023772           33 CLSCGKDRTIRLWNPHRGIHIKTYKS------------------------------HGREVRDVHVTADNSKLISC-GGD   81 (277)
Q Consensus        33 l~s~s~d~~v~iwd~~~~~~~~~~~~------------------------------h~~~v~~~~~~~~~~~l~t~-s~d   81 (277)
                      ++|++.+|.|++|++.+++.++++..                              |..........|||++|+.. ..+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            45889999999999999888877632                              22334455567899988555 578


Q ss_pred             CcEEEEECCCCceeEEee-cccCceeEEEEecCCC--EEEEEeCCCc-----------------EEEEeCccCCCcceEe
Q 023772           82 RQIFYWDVSTGRVIRKFR-GHESEVNAVKFNEYSS--VVVSAGYDQS-----------------LRAWDCRSHSTEPIQI  141 (277)
Q Consensus        82 ~~v~~wd~~~~~~~~~~~-~h~~~v~~i~~~~~~~--~l~s~~~d~~-----------------i~iwd~~~~~~~~~~~  141 (277)
                      .+|.++|+++.++...+. .+......+.|+|+++  +++..+.+..                 +..+|..+........
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~  173 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI  173 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence            899999999998876654 4567889999999987  4544443321                 2334443322111111


Q ss_pred             eccccCcEEEEEecCCeEEEeec-----------------------------------------CCcEEEEEccCCcccc
Q 023772          142 IDSFQDSVMSVCLTKTEIIGGSV-----------------------------------------DGTVRTFDIRVGRELS  180 (277)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~g~~-----------------------------------------d~~i~i~d~~~~~~~~  180 (277)
                      ..... .-..+..++..+++.+.                                         ++.+.+++......+.
T Consensus       174 v~~~p-~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~  252 (441)
T d1qnia2         174 VDGNL-DNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTR  252 (441)
T ss_dssp             ESSCC-CCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEE
T ss_pred             cCCCc-cceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEE
Confidence            11111 11222223333333322                                         2222232222211111


Q ss_pred             -cCCCCCeeEEEEeCCCCEEE-EEecCCeEEEEECCCCce--------EEEEecccc-ceeeeeeEecCCCceEEeecCC
Q 023772          181 -DDLGQPVNCISMSNDGNCIL-ASCLDSTLRLLDRSTGEL--------LQEYKGHIC-KSFKTDCCLTNSDAHVTGGSED  249 (277)
Q Consensus       181 -~~~~~~v~~~~~s~~~~~l~-~~~~d~~i~~wd~~~~~~--------~~~~~~~~~-~~~~~~~~~~~~~~~l~sgs~d  249 (277)
                       ...+.....+.++|||++++ ++..++++.+||+++...        ...+.++.. .--.+...|.+++....+.+.|
T Consensus       253 ~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~d  332 (441)
T d1qnia2         253 YIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFID  332 (441)
T ss_dssp             EECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTT
T ss_pred             EEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEccccc
Confidence             11233457789999999875 567899999999864221        011111110 0112344678888888889999


Q ss_pred             CeEEEEECc
Q 023772          250 GYIYFWDLV  258 (277)
Q Consensus       250 ~~i~iwd~~  258 (277)
                      .+|..|++.
T Consensus       333 s~v~kw~~~  341 (441)
T d1qnia2         333 SQVCKWNIA  341 (441)
T ss_dssp             TEEEEEEHH
T ss_pred             ceEEEeccc
Confidence            999999985

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.22  E-value=7.1e-09  Score=79.82  Aligned_cols=233  Identities=7%  Similarity=-0.004  Sum_probs=140.5

Q ss_pred             cEEEEEEeCCCCEEEE-EeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe
Q 023772           20 AVLAARFNGDGNYCLS-CGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKF   98 (277)
Q Consensus        20 ~V~~~~~~~~~~~l~s-~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~   98 (277)
                      .-..++++++|+..++ .+..+.+..++............-......+++++++..+++....+.+++++..+...+...
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~   94 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF   94 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCC
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeee
Confidence            3478999999996665 456677777775543322221122235678999999988888777777877766555544333


Q ss_pred             ecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEe--cCCeEEEeecCCcEEEEEccCC
Q 023772           99 RGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCL--TKTEIIGGSVDGTVRTFDIRVG  176 (277)
Q Consensus        99 ~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~d~~i~i~d~~~~  176 (277)
                      .. .....++++.++++++++-..+..+..++...... ........ .....+.+  +++.+++...++.|..+|....
T Consensus        95 ~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~-~~~~~~~~-~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~  171 (260)
T d1rwia_          95 DG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ-TVLPFTGL-NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN  171 (260)
T ss_dssp             CS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC-EECCCCSC-CSCCEEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred             ee-eeecccccccccceeEeecccccccccccccccee-eeeeeccc-CCcceeeecCCCCEeeeccccccccccccccc
Confidence            32 34567899999999888777777787777644221 11111111 11223333  3444566667778888887654


Q ss_pred             ccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEE
Q 023772          177 RELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYF  254 (277)
Q Consensus       177 ~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~i  254 (277)
                      .....  ........++++++|+++++....+.|..++..... ...+.. .........++.++|.+.++-..++.|+.
T Consensus       172 ~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~~~~~~-~~~~~P~~i~~d~~g~l~vad~~~~rI~~  249 (260)
T d1rwia_         172 NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-STVLPF-TGLNTPLAVAVDSDRTVYVADRGNDRVVK  249 (260)
T ss_dssp             CEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-CEECCC-CSCCCEEEEEECTTCCEEEEEGGGTEEEE
T ss_pred             eeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-EEEEcc-CCCCCeEEEEEeCCCCEEEEECCCCEEEE
Confidence            33222  222456889999999988888788888888875432 222211 11123345566777777666566666654


Q ss_pred             EEC
Q 023772          255 WDL  257 (277)
Q Consensus       255 wd~  257 (277)
                      .+.
T Consensus       250 i~~  252 (260)
T d1rwia_         250 LTS  252 (260)
T ss_dssp             ECC
T ss_pred             EeC
Confidence            443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.21  E-value=6.5e-08  Score=76.46  Aligned_cols=236  Identities=10%  Similarity=0.117  Sum_probs=145.8

Q ss_pred             CCcEEEEEEeCCCCEEEEEeC-------CCcEEEEcCCCCeeEEEEecc----CccEEEEEEcCCCCEEEEEeCCCcEEE
Q 023772           18 EGAVLAARFNGDGNYCLSCGK-------DRTIRLWNPHRGIHIKTYKSH----GREVRDVHVTADNSKLISCGGDRQIFY   86 (277)
Q Consensus        18 ~~~V~~~~~~~~~~~l~s~s~-------d~~v~iwd~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~t~s~d~~v~~   86 (277)
                      -......+|.++|++.++...       ++.|..||..++.........    .+....+.|.++++.++.+...+.+..
T Consensus        17 ~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~   96 (314)
T d1pjxa_          17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLV   96 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred             CCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEE
Confidence            334567889999998776433       467888998887654333211    123578999999998888877778889


Q ss_pred             EECCCCceeEEeeccc----CceeEEEEecCCCEEEEEeC---------------CCcEEEEeCccCCCcceEeeccccC
Q 023772           87 WDVSTGRVIRKFRGHE----SEVNAVKFNEYSSVVVSAGY---------------DQSLRAWDCRSHSTEPIQIIDSFQD  147 (277)
Q Consensus        87 wd~~~~~~~~~~~~h~----~~v~~i~~~~~~~~l~s~~~---------------d~~i~iwd~~~~~~~~~~~~~~~~~  147 (277)
                      .|.+.+..........    ...+.+.+.+++++.+|-..               +|.|..++...   +....... ..
T Consensus        97 ~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg---~~~~~~~~-~~  172 (314)
T d1pjxa_          97 VQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG---QMIQVDTA-FQ  172 (314)
T ss_dssp             EETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS---CEEEEEEE-ES
T ss_pred             EeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC---ceeEeeCC-cc
Confidence            9987654321111111    13577999999988887432               23344443321   11111111 11


Q ss_pred             cEEEEEe--cCC----eE-EEeecCCcEEEEEccCCcccc------cC---CCCCeeEEEEeCCCCEEEEEecCCeEEEE
Q 023772          148 SVMSVCL--TKT----EI-IGGSVDGTVRTFDIRVGRELS------DD---LGQPVNCISMSNDGNCILASCLDSTLRLL  211 (277)
Q Consensus       148 ~~~~~~~--~~~----~~-~~g~~d~~i~i~d~~~~~~~~------~~---~~~~v~~~~~s~~~~~l~~~~~d~~i~~w  211 (277)
                      ....+.+  +.+    .+ ++-+..+.|..||+.....+.      ..   .......++++.+|+.+++....+.|+.|
T Consensus       173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~  252 (314)
T d1pjxa_         173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVF  252 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred             eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEE
Confidence            1122333  322    23 445667888888875432211      11   11235679999999988888888999999


Q ss_pred             ECCCCceEEEEeccccceeeeeeEecCCCc-eEEeecCCCeEEEEECcC
Q 023772          212 DRSTGELLQEYKGHICKSFKTDCCLTNSDA-HVTGGSEDGYIYFWDLVD  259 (277)
Q Consensus       212 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sgs~d~~i~iwd~~~  259 (277)
                      |...++.+..+....  .....++|.++++ +.++.+.+|.|+-.++..
T Consensus       253 dp~~g~~~~~i~~p~--~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         253 GPDGGQPKMRIRCPF--EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             CTTCBSCSEEEECSS--SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             eCCCCEEEEEEECCC--CCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            998887766665432  2345678999886 556778889888888654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.99  E-value=8.5e-07  Score=67.77  Aligned_cols=210  Identities=12%  Similarity=0.089  Sum_probs=115.7

Q ss_pred             cccccceeeccCCcEEEEEEeCCCCEEEEEeCC-C--cEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeC-CC
Q 023772            7 PRTEANVLKGHEGAVLAARFNGDGNYCLSCGKD-R--TIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGG-DR   82 (277)
Q Consensus         7 ~~~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d-~--~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~-d~   82 (277)
                      .......+..+.+.+..-+|||||+.||-.... +  .+.+.+...+.. ..+..+........|+|+++.++..+. ++
T Consensus        27 dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~~  105 (269)
T d2hqsa1          27 DGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTG  105 (269)
T ss_dssp             TSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTS
T ss_pred             CCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEeeecCC
Confidence            334445556677888899999999999854333 2  355556555543 344556778889999999999887654 33


Q ss_pred             cEEEE--ECCCCceeEEeecccCceeEEEEecCCCE-EEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec--CC
Q 023772           83 QIFYW--DVSTGRVIRKFRGHESEVNAVKFNEYSSV-VVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT--KT  157 (277)
Q Consensus        83 ~v~~w--d~~~~~~~~~~~~h~~~v~~i~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~  157 (277)
                      ...++  ......... ............+.+++.. +++...++...+|........... ............++  +.
T Consensus       106 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~spdg~  183 (269)
T d2hqsa1         106 SLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-ITWEGSQNQDADVSSDGK  183 (269)
T ss_dssp             SCEEEEEETTTCCEEE-CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CCCSSSEEEEEEECTTSS
T ss_pred             ccceeeccccccccee-eeeccccccccccccccccceecccccCCceEeeeeccccccee-eecccccccccccccccc
Confidence            33333  222222222 2223333334455666554 444445565555543322222222 22223333333444  44


Q ss_pred             eEEEeec-CCcEE--EEEccCCcccccCCCCCeeEEEEeCCCCEEEEEec---CCeEEEEECCCCceE
Q 023772          158 EIIGGSV-DGTVR--TFDIRVGRELSDDLGQPVNCISMSNDGNCILASCL---DSTLRLLDRSTGELL  219 (277)
Q Consensus       158 ~~~~g~~-d~~i~--i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~~wd~~~~~~~  219 (277)
                      .++..+. .+...  +.|...+...............|||||++|+-.+.   ...|+++++..+...
T Consensus       184 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~  251 (269)
T d2hqsa1         184 FMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKA  251 (269)
T ss_dssp             EEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEE
T ss_pred             eeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE
Confidence            4444333 34444  44544443333333345667899999999875543   346889999766554

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.93  E-value=4.6e-06  Score=65.64  Aligned_cols=223  Identities=9%  Similarity=0.040  Sum_probs=140.0

Q ss_pred             CcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCC----CcEEEEECCCCce
Q 023772           19 GAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGD----RQIFYWDVSTGRV   94 (277)
Q Consensus        19 ~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d----~~v~~wd~~~~~~   94 (277)
                      -.+..++|+++|++.++-..++.|..|+..++.....+.........+++.++++.+++...+    +.+...+..++..
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~  119 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL  119 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCcee
Confidence            345789999999988887788999999988876666666666678999999999888775433    3355555555444


Q ss_pred             eEEeec--ccCceeEEEEecCCCEEEEEeCC------CcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeE-EEee
Q 023772           95 IRKFRG--HESEVNAVKFNEYSSVVVSAGYD------QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEI-IGGS  163 (277)
Q Consensus        95 ~~~~~~--h~~~v~~i~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~g~  163 (277)
                      ......  -....+.+.+.+++++.++....      +.+..++....   .+..+.........+.+++  +.+ ++-+
T Consensus       120 ~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~---~~~~~~~~~~~pnGia~s~dg~~lyvad~  196 (319)
T d2dg1a1         120 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR---TVTPIIQNISVANGIALSTDEKVLWVTET  196 (319)
T ss_dssp             EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC---CEEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred             eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc---eeEEEeeccceeeeeeeccccceEEEecc
Confidence            333321  13356789999999887764321      22444443321   1111111112234455554  334 5556


Q ss_pred             cCCcEEEEEccCCccc--------ccCC--CCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccc----cce
Q 023772          164 VDGTVRTFDIRVGREL--------SDDL--GQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHI----CKS  229 (277)
Q Consensus       164 ~d~~i~i~d~~~~~~~--------~~~~--~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~----~~~  229 (277)
                      ..+.|..||+......        ....  ......|+++.+|+..++....+.|.+||. .|+.+..+..-.    ...
T Consensus       197 ~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~  275 (319)
T d2dg1a1         197 TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHML  275 (319)
T ss_dssp             GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSC
T ss_pred             cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCc
Confidence            7788999987532111        0011  123567999999998888889999999996 688887765321    112


Q ss_pred             eeeeeEecCCCceEEe
Q 023772          230 FKTDCCLTNSDAHVTG  245 (277)
Q Consensus       230 ~~~~~~~~~~~~~l~s  245 (277)
                      ....+++.++...++.
T Consensus       276 ~~~~~~~~~~~~~~~~  291 (319)
T d2dg1a1         276 RSTHPQFIPGTNQLII  291 (319)
T ss_dssp             BCCEEEECTTSCEEEE
T ss_pred             eeeeEEEeCCCCEEEE
Confidence            3456677776554443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.90  E-value=6.4e-07  Score=72.12  Aligned_cols=244  Identities=8%  Similarity=0.085  Sum_probs=134.0

Q ss_pred             cCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCC-CeeEE-EEeccCccEEEEEEcCCCCEE--EEEe-CCCcEEEEECCC
Q 023772           17 HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHR-GIHIK-TYKSHGREVRDVHVTADNSKL--ISCG-GDRQIFYWDVST   91 (277)
Q Consensus        17 H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~-~~~~~-~~~~h~~~v~~~~~~~~~~~l--~t~s-~d~~v~~wd~~~   91 (277)
                      ...++.-++|+++++.|+++.. +.+..|.+.. +.... ...........+.++++++.+  +++. ..++|..+.+..
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~  116 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccC
Confidence            3445667999999999988765 5677776543 22221 112223345567788888743  3322 235555554321


Q ss_pred             -C------------ce---eEE-eecccCceeEEEEecCCCEEEEEeC-CCcEEEEeCccCCC-cceEee--ccccCcEE
Q 023772           92 -G------------RV---IRK-FRGHESEVNAVKFNEYSSVVVSAGY-DQSLRAWDCRSHST-EPIQII--DSFQDSVM  150 (277)
Q Consensus        92 -~------------~~---~~~-~~~h~~~v~~i~~~~~~~~l~s~~~-d~~i~iwd~~~~~~-~~~~~~--~~~~~~~~  150 (277)
                       +            ..   ... -+.....+.++.|+|++++++.++. ...|.+|+...... ......  ........
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr  196 (365)
T d1jofa_         117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceE
Confidence             1            11   100 1112234688999999998877754 45688887543211 111111  11223445


Q ss_pred             EEEecCC--eE-EEeecCCcEEEEEccCCcccc--------cC-------------CCCCeeEEEEeCCCCEEEEEec-C
Q 023772          151 SVCLTKT--EI-IGGSVDGTVRTFDIRVGRELS--------DD-------------LGQPVNCISMSNDGNCILASCL-D  205 (277)
Q Consensus       151 ~~~~~~~--~~-~~g~~d~~i~i~d~~~~~~~~--------~~-------------~~~~v~~~~~s~~~~~l~~~~~-d  205 (277)
                      .+.++++  .+ ++...+++|.+|++.......        ..             .......+.++|+|++|+++.. +
T Consensus       197 ~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~  276 (365)
T d1jofa_         197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN  276 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred             EEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccC
Confidence            5566554  33 556678899999986543110        00             0012456889999999877632 2


Q ss_pred             -----CeEEEEECCCCceEE-EEe-c--cccceeeeeeEecC-CCceEE-eecCCCeEEEEECcCcc
Q 023772          206 -----STLRLLDRSTGELLQ-EYK-G--HICKSFKTDCCLTN-SDAHVT-GGSEDGYIYFWDLVDAS  261 (277)
Q Consensus       206 -----~~i~~wd~~~~~~~~-~~~-~--~~~~~~~~~~~~~~-~~~~l~-sgs~d~~i~iwd~~~~~  261 (277)
                           +.|..|+......+. ... .  ...........++| +|++|+ ++..++.|.+|+++...
T Consensus       277 ~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             CCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence                 237777765432222 111 0  00111233456777 688665 55788999999876543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.88  E-value=1.8e-07  Score=71.67  Aligned_cols=191  Identities=7%  Similarity=0.027  Sum_probs=123.7

Q ss_pred             EEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeec
Q 023772           21 VLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRG  100 (277)
Q Consensus        21 V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~  100 (277)
                      ...++++++|++.++....+.+++++..++..+..... ......+++.++++.+++-.....+..++............
T Consensus        59 p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~  137 (260)
T d1rwia_          59 PQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT  137 (260)
T ss_dssp             CCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCC
T ss_pred             ceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeee-eeecccccccccceeEeeccccccccccccccceeeeeeec
Confidence            45788999999988888888888887666554433332 34578999999998888776777788887665443222112


Q ss_pred             ccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC--eEEEeecCCcEEEEEccCCcc
Q 023772          101 HESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--EIIGGSVDGTVRTFDIRVGRE  178 (277)
Q Consensus       101 h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~i~d~~~~~~  178 (277)
                      ......++++.++++++++...++.|..++......  .............+.++++  .+++....+.|..++......
T Consensus       138 ~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~--~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~  215 (260)
T d1rwia_         138 GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ--VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS  215 (260)
T ss_dssp             SCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCE--EECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC
T ss_pred             ccCCcceeeecCCCCEeeecccccccccccccccee--eeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE
Confidence            233457899999999999888889999998764321  1111122233455666543  344445567777777644322


Q ss_pred             ccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECC
Q 023772          179 LSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRS  214 (277)
Q Consensus       179 ~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~  214 (277)
                      ...  ..-.....|+++++|+.+++-..++.|+.++..
T Consensus       216 ~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         216 TVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             EECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             EEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence            111  112356789999999888876777777655543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.83  E-value=8.7e-06  Score=61.91  Aligned_cols=225  Identities=15%  Similarity=0.094  Sum_probs=124.9

Q ss_pred             cEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCC---cEEEEECCCCceeEEeecccCceeEEEEecCCCEE
Q 023772           41 TIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDR---QIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVV  117 (277)
Q Consensus        41 ~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~---~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l  117 (277)
                      .|.|-|.. |...+.+..+...+.+-+|+|||++|+-.....   .+.+.+...+.. ..+..+........++|+++.+
T Consensus        20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i   97 (269)
T d2hqsa1          20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKL   97 (269)
T ss_dssp             EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEE
T ss_pred             EEEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCee
Confidence            45555644 333444444567788999999999998654332   366666665554 3455567788889999999988


Q ss_pred             EEEeC-CCcEEEEeCccCCCcceEeeccccCcEEEEEe--cCCe-EEEeecCCcEE--EEEccCCcccc-cCCCCCeeEE
Q 023772          118 VSAGY-DQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCL--TKTE-IIGGSVDGTVR--TFDIRVGRELS-DDLGQPVNCI  190 (277)
Q Consensus       118 ~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~g~~d~~i~--i~d~~~~~~~~-~~~~~~v~~~  190 (277)
                      +.... ++...++.............. ..........  .+.. +++...++...  ..++....... ..........
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~  176 (269)
T d2hqsa1          98 AFALSKTGSLNLYVMDLASGQIRQVTD-GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDA  176 (269)
T ss_dssp             EEEECTTSSCEEEEEETTTCCEEECCC-CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEE
T ss_pred             eEeeecCCccceeecccccccceeeee-ccccccccccccccccceecccccCCceEeeeecccccceeeeccccccccc
Confidence            76553 333333332222221121111 1122222122  2232 44444555444  44544433221 1223445667


Q ss_pred             EEeCCCCEEEEEecCC---eEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeec---CCCeEEEEECcCcccee
Q 023772          191 SMSNDGNCILASCLDS---TLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGS---EDGYIYFWDLVDASVVA  264 (277)
Q Consensus       191 ~~s~~~~~l~~~~~d~---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs---~d~~i~iwd~~~~~~~~  264 (277)
                      .|+|+++.++..+.++   .+.+.|...+... ... ...  ......++|||++|+-.+   ....|++|++..+.. .
T Consensus       177 ~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~-~~~--~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~-~  251 (269)
T d2hqsa1         177 DVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLS-STF--LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-A  251 (269)
T ss_dssp             EECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECC-CSS--SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE-E
T ss_pred             ccccccceeEEEeecCCceeeeEeecccccce-Eee-cCc--cccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-E
Confidence            8999999988876554   4555566555432 222 211  123457899999887433   345789999986654 4


Q ss_pred             eeccCccee
Q 023772          265 KFKAHSLVV  273 (277)
Q Consensus       265 ~~~~h~~~v  273 (277)
                      ++....+.+
T Consensus       252 ~lt~~~g~~  260 (269)
T d2hqsa1         252 RLPATDGQV  260 (269)
T ss_dssp             ECCCSSSEE
T ss_pred             EEeCCCCcE
Confidence            555544433

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.82  E-value=3.4e-06  Score=65.85  Aligned_cols=205  Identities=7%  Similarity=-0.016  Sum_probs=127.5

Q ss_pred             CeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEE
Q 023772           50 GIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAW  129 (277)
Q Consensus        50 ~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iw  129 (277)
                      .+.+..+... ..+..+++.|+++++++...+++|..||....  ...+......+.++++.++++++++...++.+..+
T Consensus        18 ~~v~~~~p~~-~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~   94 (302)
T d2p4oa1          18 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVV   94 (302)
T ss_dssp             EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             ccEEEECCCC-CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEE
Confidence            3444555432 35789999999999999999999999886543  33445566788999999999999998888888888


Q ss_pred             eCccCCCcceEeec-cccCcEEEEEecCC--eEEEeecCCcEEEEEccCCccc--------c-c-CC--CCCeeEEEEeC
Q 023772          130 DCRSHSTEPIQIID-SFQDSVMSVCLTKT--EIIGGSVDGTVRTFDIRVGREL--------S-D-DL--GQPVNCISMSN  194 (277)
Q Consensus       130 d~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~g~~d~~i~i~d~~~~~~~--------~-~-~~--~~~v~~~~~s~  194 (277)
                      +............. ........+.+.+.  .+++.+.++.+..+|...+...        . . ..  ....+.+.++.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~  174 (302)
T d2p4oa1          95 SLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG  174 (302)
T ss_dssp             EEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET
T ss_pred             EecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC
Confidence            86543332222221 12223445555433  3455556677777776544211        0 0 01  12456677764


Q ss_pred             CCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECc
Q 023772          195 DGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLV  258 (277)
Q Consensus       195 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~  258 (277)
                      + ..+++.+..+.|+.++......................++.++|++.++...++.|..++..
T Consensus       175 ~-~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~  237 (302)
T d2p4oa1         175 N-FLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD  237 (302)
T ss_dssp             T-EEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred             C-ceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCC
Confidence            3 35566678888988887654322111100001122346778889887777778888888765

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.72  E-value=2.6e-05  Score=61.21  Aligned_cols=206  Identities=13%  Similarity=0.150  Sum_probs=120.5

Q ss_pred             cCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCC----CcEEEEeCccC
Q 023772           59 HGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYD----QSLRAWDCRSH  134 (277)
Q Consensus        59 h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d----~~i~iwd~~~~  134 (277)
                      .......++|.++++..++-...++|.-|+.++++....+.........+++.++++++++...+    +.+...+....
T Consensus        38 ~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          38 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             CCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence            34455789999999887877788999999988877666666566678899999999988775433    22444443322


Q ss_pred             CCcceEeecc--ccCcEEEEEecCCe-EEEeecC-------CcEEEEEccCCcccc-cCCCCCeeEEEEeCCCCEE-EEE
Q 023772          135 STEPIQIIDS--FQDSVMSVCLTKTE-IIGGSVD-------GTVRTFDIRVGRELS-DDLGQPVNCISMSNDGNCI-LAS  202 (277)
Q Consensus       135 ~~~~~~~~~~--~~~~~~~~~~~~~~-~~~g~~d-------~~i~i~d~~~~~~~~-~~~~~~v~~~~~s~~~~~l-~~~  202 (277)
                      ..  ......  .......+.++++. ++.+...       +.+..++........ ...-...+.++|+|+++.| ++-
T Consensus       118 ~~--~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad  195 (319)
T d2dg1a1         118 NL--QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTE  195 (319)
T ss_dssp             SC--EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEE
T ss_pred             ee--eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEec
Confidence            21  111111  11223334444332 3333221       123333332211100 0111345789999999865 555


Q ss_pred             ecCCeEEEEECCC-CceEEEEec-----cccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeec
Q 023772          203 CLDSTLRLLDRST-GELLQEYKG-----HICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFK  267 (277)
Q Consensus       203 ~~d~~i~~wd~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~  267 (277)
                      +..+.|+.||+.. +........     .......--.++..+|++.++....+.|..+|. +|+++.++.
T Consensus       196 ~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~  265 (319)
T d2dg1a1         196 TTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQIL  265 (319)
T ss_dssp             GGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEE
T ss_pred             ccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEe
Confidence            6788999999753 222211111     011111233567788887777778899999995 688888775

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.55  E-value=7.5e-05  Score=57.21  Aligned_cols=199  Identities=13%  Similarity=0.175  Sum_probs=119.5

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecc------cCceeEEEEecCCC-EEEE-EeCCCcEEEEeCcc
Q 023772           62 EVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGH------ESEVNAVKFNEYSS-VVVS-AGYDQSLRAWDCRS  133 (277)
Q Consensus        62 ~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h------~~~v~~i~~~~~~~-~l~s-~~~d~~i~iwd~~~  133 (277)
                      ....++++++++.+++-.....|++||.+ ++.++.+...      ...-..+.+.++.. .++. .+.++.|..++...
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g  102 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG  102 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccc
Confidence            46899999999988887788899999965 6666665321      11234455555433 3333 34455677776432


Q ss_pred             CCCcceEeec-cccCcEEEEEec--CCeEEEeecCCcEEEEEccCCcccc----cCCCCCeeEEEEeCCCCEEEEEecCC
Q 023772          134 HSTEPIQIID-SFQDSVMSVCLT--KTEIIGGSVDGTVRTFDIRVGRELS----DDLGQPVNCISMSNDGNCILASCLDS  206 (277)
Q Consensus       134 ~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~g~~d~~i~i~d~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~d~  206 (277)
                         .....+. ........+..+  +..+++....+.+.+++.... .+.    .........++++++++.+++....+
T Consensus       103 ---~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~-~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~  178 (279)
T d1q7fa_         103 ---QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAH  178 (279)
T ss_dssp             ---CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGT
T ss_pred             ---cceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCc-eeecccccccccccceeeeccceeEEeeecccc
Confidence               1122221 111222333443  333444444555666664322 111    11234577889999999888888899


Q ss_pred             eEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeec-CCCeEEEEECcCccceeeec
Q 023772          207 TLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGS-EDGYIYFWDLVDASVVAKFK  267 (277)
Q Consensus       207 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs-~d~~i~iwd~~~~~~~~~~~  267 (277)
                      .|++||.. ++.+..+............++.++|+++++-+ .++.|.+++ .+|+++..+.
T Consensus       179 ~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~  238 (279)
T d1q7fa_         179 CVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALE  238 (279)
T ss_dssp             EEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEE
T ss_pred             ceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEe
Confidence            99999985 66666664322223345567788888776644 455799998 4588776664

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.54  E-value=5.2e-05  Score=60.59  Aligned_cols=156  Identities=10%  Similarity=0.084  Sum_probs=93.5

Q ss_pred             cEEEEEEcCCCCEEEEEeC-CCcEEEEECCC-Ccee--EEee--cccCceeEEEEecCCCEEEEE-eCCCcEEEEeCccC
Q 023772           62 EVRDVHVTADNSKLISCGG-DRQIFYWDVST-GRVI--RKFR--GHESEVNAVKFNEYSSVVVSA-GYDQSLRAWDCRSH  134 (277)
Q Consensus        62 ~v~~~~~~~~~~~l~t~s~-d~~v~~wd~~~-~~~~--~~~~--~h~~~v~~i~~~~~~~~l~s~-~~d~~i~iwd~~~~  134 (277)
                      -++++.|+|++++++++.. ..+|.+|+... +...  ....  ........+.|+|+++++... -.+++|.+|+....
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~  225 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence            4789999999998887753 45788887653 3222  1111  223566789999999987554 46889999998654


Q ss_pred             CCcceEeecc-----------------ccCcEEEEEe--cCCeEEEee-cC-----CcEEEEEccCCcccc--------c
Q 023772          135 STEPIQIIDS-----------------FQDSVMSVCL--TKTEIIGGS-VD-----GTVRTFDIRVGRELS--------D  181 (277)
Q Consensus       135 ~~~~~~~~~~-----------------~~~~~~~~~~--~~~~~~~g~-~d-----~~i~i~d~~~~~~~~--------~  181 (277)
                      ..........                 .......+.+  ++..++++. .+     ..|..|++.....+.        .
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~  305 (365)
T d1jofa_         226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP  305 (365)
T ss_dssp             TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS
T ss_pred             CceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEE
Confidence            3322221110                 0111233344  445555542 22     236667665322111        1


Q ss_pred             CCCCCeeEEEEeC-CCCEEEEE-ecCCeEEEEECCCCc
Q 023772          182 DLGQPVNCISMSN-DGNCILAS-CLDSTLRLLDRSTGE  217 (277)
Q Consensus       182 ~~~~~v~~~~~s~-~~~~l~~~-~~d~~i~~wd~~~~~  217 (277)
                      ..+...+.++++| +|++|+++ ..++.|.+|++....
T Consensus       306 ~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         306 TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             cCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            1234567899998 78987666 567899999875543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.53  E-value=3.1e-05  Score=60.59  Aligned_cols=192  Identities=7%  Similarity=0.087  Sum_probs=116.1

Q ss_pred             EEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccC----ccEEEEEEcCCCCEEEEEeC---------------C
Q 023772           21 VLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG----REVRDVHVTADNSKLISCGG---------------D   81 (277)
Q Consensus        21 V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~t~s~---------------d   81 (277)
                      -..+.|+++|+.++.+.....+...+...+..........    ...+.+++.+++...+|-..               +
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~  152 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKF  152 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSC
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCC
Confidence            4579999999988888777778888876543221111111    13578999999988887432               2


Q ss_pred             CcEEEEECCCCceeEEeecccCceeEEEEecCCC-----EEEEEeCCCcEEEEeCccCCCc-ceEee---cc-ccCcEEE
Q 023772           82 RQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSS-----VVVSAGYDQSLRAWDCRSHSTE-PIQII---DS-FQDSVMS  151 (277)
Q Consensus        82 ~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~-----~l~s~~~d~~i~iwd~~~~~~~-~~~~~---~~-~~~~~~~  151 (277)
                      +.|..++.+ ++... +...-..-+.+++++++.     +.++-+..+.|..||+...... ....+   .. .....-.
T Consensus       153 G~v~~~~~d-g~~~~-~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdG  230 (314)
T d1pjxa_         153 GSIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADG  230 (314)
T ss_dssp             EEEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEE
T ss_pred             ceEEEEeec-CceeE-eeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccccccccee
Confidence            345555443 33322 222333447889988764     5566677888999887543211 11111   11 1112233


Q ss_pred             EEec--CCeEEEeecCCcEEEEEccCCccccc--CCCCCeeEEEEeCCCC-EEEEEecCCeEEEEECC
Q 023772          152 VCLT--KTEIIGGSVDGTVRTFDIRVGRELSD--DLGQPVNCISMSNDGN-CILASCLDSTLRLLDRS  214 (277)
Q Consensus       152 ~~~~--~~~~~~g~~d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~-~l~~~~~d~~i~~wd~~  214 (277)
                      +.++  ++..++....+.|.+||...++....  .....+++++|.|+++ .+++.+.++.|..+++.
T Consensus       231 iavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         231 MDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             eEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            4444  34445555678899999876653322  2235678999999987 45666778888888864

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.33  E-value=0.00027  Score=53.47  Aligned_cols=93  Identities=13%  Similarity=0.190  Sum_probs=63.0

Q ss_pred             EeCC--CCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeC-C-----CcEEEEECCCCceeEE
Q 023772           26 FNGD--GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGG-D-----RQIFYWDVSTGRVIRK   97 (277)
Q Consensus        26 ~~~~--~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~-d-----~~v~~wd~~~~~~~~~   97 (277)
                      .+|+  |+.++-.+. +.|.+.|+..++.. .+..+.+......|+|||++|+-... +     ..|.+++..+++..+-
T Consensus         6 ~sPdi~G~~v~f~~~-~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l   83 (281)
T d1k32a2           6 LNPDIHGDRIIFVCC-DDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI   83 (281)
T ss_dssp             EEEEEETTEEEEEET-TEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC
T ss_pred             cCCCCCCCEEEEEeC-CcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEe
Confidence            4688  888876544 56777798887654 45556678899999999999875432 2     2477778777765432


Q ss_pred             ee------cccCceeEEEEecCCCEEEEE
Q 023772           98 FR------GHESEVNAVKFNEYSSVVVSA  120 (277)
Q Consensus        98 ~~------~h~~~v~~i~~~~~~~~l~s~  120 (277)
                      ..      ..........|+|+++.++..
T Consensus        84 t~~~~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          84 TYFSGKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             CCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             eecCCCccCccccccccccCCCCCEEEEE
Confidence            11      112344667899999887764

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=0.00014  Score=59.97  Aligned_cols=108  Identities=8%  Similarity=0.082  Sum_probs=75.8

Q ss_pred             EEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEecc---CccEEEEEEcCCCCEEEEEe---------CCCcEEEEECCC
Q 023772           24 ARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSH---GREVRDVHVTADNSKLISCG---------GDRQIFYWDVST   91 (277)
Q Consensus        24 ~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h---~~~v~~~~~~~~~~~l~t~s---------~d~~v~~wd~~~   91 (277)
                      ..|.+++.++.. ..||.+.+||+.+++....+...   ...+....|+|++++++...         ..+...++|+.+
T Consensus        22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence            368888877654 56789999999887654444332   23677888999999887653         346788999998


Q ss_pred             CceeEE--eecccCceeEEEEecCCCEEEEEeCCCcEEEEeCcc
Q 023772           92 GRVIRK--FRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRS  133 (277)
Q Consensus        92 ~~~~~~--~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~  133 (277)
                      +....-  .......+....|+|+|+.++-.. ++.+.+.+...
T Consensus       101 ~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~  143 (465)
T d1xfda1         101 GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVG  143 (465)
T ss_dssp             CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSS
T ss_pred             CceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCC
Confidence            765322  122234555678999999988765 56777777654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.05  E-value=0.0013  Score=50.50  Aligned_cols=211  Identities=10%  Similarity=0.078  Sum_probs=129.5

Q ss_pred             EEEEEeCC-CCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEee-
Q 023772           22 LAARFNGD-GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFR-   99 (277)
Q Consensus        22 ~~~~~~~~-~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~-   99 (277)
                      .+-.|++. +.+..+=-..+.|..||..+++.. .+. ....+.++++.+++.++++ +.+ .+..+|.++++...-.. 
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~   96 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAEL   96 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECS
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeee
Confidence            45668874 445555456788999999887643 343 2457889999888877665 444 58999999887543221 


Q ss_pred             -c--ccCceeEEEEecCCCEEEEEeCC----CcEEEEeCccCCCcceEeeccccCcEEEEEecC--Ce-EEEeecCCcEE
Q 023772          100 -G--HESEVNAVKFNEYSSVVVSAGYD----QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TE-IIGGSVDGTVR  169 (277)
Q Consensus       100 -~--h~~~v~~i~~~~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~g~~d~~i~  169 (277)
                       .  ....++.+.+.+++++.++...+    +.-.+|.+.....  ...... ......+.+++  .. +++.+..+.|.
T Consensus        97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~--~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~  173 (295)
T d2ghsa1          97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKV--TKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLM  173 (295)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEE--EEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEE
T ss_pred             ecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcE--EEEeec-cCCcceeeecCCCceEEEeecccceee
Confidence             1  12357889999999987765432    2334454433221  111111 11223344443  33 45666778888


Q ss_pred             EEEccCCcc-------ccc---CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEec-C
Q 023772          170 TFDIRVGRE-------LSD---DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLT-N  238 (277)
Q Consensus       170 i~d~~~~~~-------~~~---~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~  238 (277)
                      .|++.....       ...   ........++++.+|++.++.-..+.|..||. .++.+..+.--.  ...++|||. +
T Consensus       174 ~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~--~~~T~~~FGG~  250 (295)
T d2ghsa1         174 RVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPG--KQTTCPAFIGP  250 (295)
T ss_dssp             EEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSC--SBEEEEEEEST
T ss_pred             EeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCC--CceEEEEEeCC
Confidence            888742211       111   12234678999999998777777889999996 588888775432  235677885 5


Q ss_pred             CCce
Q 023772          239 SDAH  242 (277)
Q Consensus       239 ~~~~  242 (277)
                      +.+.
T Consensus       251 d~~~  254 (295)
T d2ghsa1         251 DASR  254 (295)
T ss_dssp             TSCE
T ss_pred             CCCE
Confidence            5443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=8.3e-05  Score=61.45  Aligned_cols=136  Identities=7%  Similarity=-0.003  Sum_probs=78.6

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecc---cCceeEEEEecCCCEEEEEe---------CCCcEEEEeCcc
Q 023772           66 VHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGH---ESEVNAVKFNEYSSVVVSAG---------YDQSLRAWDCRS  133 (277)
Q Consensus        66 ~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h---~~~v~~i~~~~~~~~l~s~~---------~d~~i~iwd~~~  133 (277)
                      ..|.+++.++.. ..+|.+.+||+++++...-+..+   .-.+....++||++.++...         ..+.+.++|+.+
T Consensus        22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence            357777766553 45788999999887653323322   23566788999999877653         357788999876


Q ss_pred             CCCcceEeeccccCcEEEE--EecCCeEEEeecCCcEEEEEccCCccccc---CCC-----------------CCeeEEE
Q 023772          134 HSTEPIQIIDSFQDSVMSV--CLTKTEIIGGSVDGTVRTFDIRVGRELSD---DLG-----------------QPVNCIS  191 (277)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~d~~i~i~d~~~~~~~~~---~~~-----------------~~v~~~~  191 (277)
                      ....++.........+...  +++++.++-. .++.|.+.+...+..+..   ...                 ..-..+-
T Consensus       101 ~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv-~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~  179 (465)
T d1xfda1         101 GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFI-FENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHW  179 (465)
T ss_dssp             CCCEECCCTTCCSCCCSBCCBCSSTTCEEEE-ETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEE
T ss_pred             CceeeccCccCCccccceeeeccCCceEEEE-ecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEE
Confidence            5443332222222222222  3334444433 355666666654432211   000                 1124677


Q ss_pred             EeCCCCEEEEEe
Q 023772          192 MSNDGNCILASC  203 (277)
Q Consensus       192 ~s~~~~~l~~~~  203 (277)
                      |||||++|+...
T Consensus       180 WSPDgk~iaf~~  191 (465)
T d1xfda1         180 WSPDGTRLAYAA  191 (465)
T ss_dssp             ECTTSSEEEEEE
T ss_pred             ECCCCCeEEEEE
Confidence            999999998865

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.84  E-value=0.0061  Score=51.26  Aligned_cols=234  Identities=12%  Similarity=0.058  Sum_probs=128.7

Q ss_pred             CEEEEEeCCCcEEEEcCCCCeeEEEEeccC----ccEEEEEEcCCCCEEEEEe-----CCCcEEEEECCCCceeEEeecc
Q 023772           31 NYCLSCGKDRTIRLWNPHRGIHIKTYKSHG----REVRDVHVTADNSKLISCG-----GDRQIFYWDVSTGRVIRKFRGH  101 (277)
Q Consensus        31 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~t~s-----~d~~v~~wd~~~~~~~~~~~~h  101 (277)
                      ..++.++.|+.+.--|.++|+..-.+....    ..+++--...++..++.++     .+|.|.-+|+++|+.+.++...
T Consensus       116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~  195 (571)
T d2ad6a1         116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFAT  195 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             CeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEecc
Confidence            356667788888888999998776654321    1222222222333333332     3678999999999998765421


Q ss_pred             c-------------------------------------Cce-eEEEEecCCCEEEEEeCC----------------CcEE
Q 023772          102 E-------------------------------------SEV-NAVKFNEYSSVVVSAGYD----------------QSLR  127 (277)
Q Consensus       102 ~-------------------------------------~~v-~~i~~~~~~~~l~s~~~d----------------~~i~  127 (277)
                      .                                     ..+ ....+.+...++..+..+                ..+.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svv  275 (571)
T d2ad6a1         196 GSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIW  275 (571)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEE
T ss_pred             CCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCcccccccccccccccee
Confidence            1                                     112 124555555555544332                2233


Q ss_pred             EEeCccCCCcceEeecc---------ccCcEEEEEecCC---eEEEeecCCcEEEEEccCCccccc----C---------
Q 023772          128 AWDCRSHSTEPIQIIDS---------FQDSVMSVCLTKT---EIIGGSVDGTVRTFDIRVGRELSD----D---------  182 (277)
Q Consensus       128 iwd~~~~~~~~~~~~~~---------~~~~~~~~~~~~~---~~~~g~~d~~i~i~d~~~~~~~~~----~---------  182 (277)
                      -.|+++.+.........         .+.....+...+.   .++.++.+|.+.++|-.+++.+..    .         
T Consensus       276 Ald~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~~  355 (571)
T d2ad6a1         276 GRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVD  355 (571)
T ss_dssp             EEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEEC
T ss_pred             eeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCccccccccc
Confidence            44444332211111000         0111122223332   255677888888888777654310    0         


Q ss_pred             ---------------------------C-CCCeeEEEEeCCCCEEEEEecC-----------------------------
Q 023772          183 ---------------------------L-GQPVNCISMSNDGNCILASCLD-----------------------------  205 (277)
Q Consensus       183 ---------------------------~-~~~v~~~~~s~~~~~l~~~~~d-----------------------------  205 (277)
                                                 . .......+++|+...+.....+                             
T Consensus       356 ~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (571)
T d2ad6a1         356 LKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGP  435 (571)
T ss_dssp             TTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECT
T ss_pred             ccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeecccc
Confidence                                       0 0011235777777666654332                             


Q ss_pred             --------CeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeec
Q 023772          206 --------STLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFK  267 (277)
Q Consensus       206 --------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~  267 (277)
                              |.|.-+|+.+++.+..+..-. .  ...-.++..+.+++.|+.||.++.+|.++|+.+=+++
T Consensus       436 ~~~~~~~~G~l~AiD~~TG~~~W~~~~~~-~--~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~  502 (571)
T d2ad6a1         436 NGPTKKEMGQIRAFDLTTGKAKWTKWEKF-A--AWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             TSTTSCCCEEEEEECTTTCCEEEEEEESS-C--CCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCcccCCcccEEEeccCCCceeeEcCCCC-C--CCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence                    457778888888876654211 0  1111223346677889999999999999999986654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.78  E-value=0.0042  Score=47.57  Aligned_cols=202  Identities=11%  Similarity=0.008  Sum_probs=114.6

Q ss_pred             EEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeec
Q 023772           65 DVHVTADNSKL-ISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIID  143 (277)
Q Consensus        65 ~~~~~~~~~~l-~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  143 (277)
                      +-.|.+..+.| .+--..++|.-||.++++.. .+. ....+.++.+.+++.++++ +.+| +..+|..+..........
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~g-l~~~d~~tg~~~~l~~~~   97 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDDG-LFLRDTATGVLTLHAELE   97 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETTE-EEEEETTTCCEEEEECSS
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEE-EeCc-cEEeecccceeeEEeeee
Confidence            34566644444 34345678888998887643 232 3557788999998877775 4454 888898765432221111


Q ss_pred             cc--cCcEEEEEecCCe-EEEeec-----CCcEEEEEccCCcccccC-CCCCeeEEEEeCCCCEE-EEEecCCeEEEEEC
Q 023772          144 SF--QDSVMSVCLTKTE-IIGGSV-----DGTVRTFDIRVGRELSDD-LGQPVNCISMSNDGNCI-LASCLDSTLRLLDR  213 (277)
Q Consensus       144 ~~--~~~~~~~~~~~~~-~~~g~~-----d~~i~i~d~~~~~~~~~~-~~~~v~~~~~s~~~~~l-~~~~~d~~i~~wd~  213 (277)
                      ..  .........+++. ++.+..     .+.-.+|.+..++..... .-...+.++|+++++.+ ++-+..+.|+.|++
T Consensus        98 ~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~  177 (295)
T d2ghsa1          98 SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPL  177 (295)
T ss_dssp             TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEB
T ss_pred             cCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeee
Confidence            11  1124444555443 444332     223455655554322111 11346789999999865 45566788988886


Q ss_pred             CCC------ceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCcc
Q 023772          214 STG------ELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSL  271 (277)
Q Consensus       214 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~  271 (277)
                      ...      +..............-..++..+|++-++.-..+.|..|| .+|+++..++-...
T Consensus       178 d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~lP~~  240 (295)
T d2ghsa1         178 DARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYEVPGK  240 (295)
T ss_dssp             CTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEECSCS
T ss_pred             cccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec-CCCcEeeEecCCCC
Confidence            421      1111111111122233345667777766656678899999 46888888875433

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.76  E-value=0.0087  Score=50.57  Aligned_cols=68  Identities=15%  Similarity=0.124  Sum_probs=46.0

Q ss_pred             CEEEEEeCCCcEEEEcCCCCeeEEEEeccCc----cEEEEEEcCCCCEEEEEe------CCCcEEEEECCCCceeEEee
Q 023772           31 NYCLSCGKDRTIRLWNPHRGIHIKTYKSHGR----EVRDVHVTADNSKLISCG------GDRQIFYWDVSTGRVIRKFR   99 (277)
Q Consensus        31 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~----~v~~~~~~~~~~~l~t~s------~d~~v~~wd~~~~~~~~~~~   99 (277)
                      .+++.++.|+.|.--|..+|+.+..+.....    .+++--..-+ ..++.+.      ..|.|+-+|+++|+++.++.
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~-~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~  199 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVK-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY  199 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEET-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEEC-CeEEEeeccccccccCceEEEECCCCcEEEEee
Confidence            4688889999999999999998887753211    1221111113 3455543      34889999999999987764

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.72  E-value=0.0067  Score=48.38  Aligned_cols=244  Identities=11%  Similarity=0.119  Sum_probs=141.3

Q ss_pred             EEEEeC---CCCEEEEE-eCCCcEEEEcCCCCeeEEEEec-cCccEEEEEEc--CCCCEEEEEeCCC-------------
Q 023772           23 AARFNG---DGNYCLSC-GKDRTIRLWNPHRGIHIKTYKS-HGREVRDVHVT--ADNSKLISCGGDR-------------   82 (277)
Q Consensus        23 ~~~~~~---~~~~l~s~-s~d~~v~iwd~~~~~~~~~~~~-h~~~v~~~~~~--~~~~~l~t~s~d~-------------   82 (277)
                      .+.|-.   ||+||+.. ..+..|.+-|+.+.+..+...- -...+..+...  |+..+++.++.+.             
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            455544   89988865 5788999999999887665543 23456666664  5667888776532             


Q ss_pred             -----cEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCc---------------EEEEeCcc-------CC
Q 023772           83 -----QIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQS---------------LRAWDCRS-------HS  135 (277)
Q Consensus        83 -----~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~---------------i~iwd~~~-------~~  135 (277)
                           .+.+.|.++.+...+..- ......++++++++++++.+.+..               +.+++...       +.
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk  247 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD  247 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred             hhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence                 366789988887766553 234556899999999888775422               33333210       00


Q ss_pred             ---CcceEeeccc---cCcE------------EEEEecCCe-EEEeecCCcEEEEEccCCccccc-------------CC
Q 023772          136 ---TEPIQIIDSF---QDSV------------MSVCLTKTE-IIGGSVDGTVRTFDIRVGRELSD-------------DL  183 (277)
Q Consensus       136 ---~~~~~~~~~~---~~~~------------~~~~~~~~~-~~~g~~d~~i~i~d~~~~~~~~~-------------~~  183 (277)
                         ...+..+...   ...+            ..+++++.+ +++|..+.++.++|+++-.....             ..
T Consensus       248 ~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~el  327 (459)
T d1fwxa2         248 YQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL  327 (459)
T ss_dssp             SEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBC
T ss_pred             cEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeeccc
Confidence               0001111100   0011            122334445 55677889999999975332210             12


Q ss_pred             CCCeeEEEEeCCCCEEEEEecCCeEEEEECCCC----------ceEEEEeccccceeeee---eEecCCCceEEee---c
Q 023772          184 GQPVNCISMSNDGNCILASCLDSTLRLLDRSTG----------ELLQEYKGHICKSFKTD---CCLTNSDAHVTGG---S  247 (277)
Q Consensus       184 ~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~----------~~~~~~~~~~~~~~~~~---~~~~~~~~~l~sg---s  247 (277)
                      +--...-+|+..|+...+-.-|..|.-|++...          ..+..+.-|-.......   -...++|++|++.   |
T Consensus       328 glgPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~nk~s  407 (459)
T d1fwxa2         328 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFS  407 (459)
T ss_dssp             CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCC
T ss_pred             CcCccccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEecccc
Confidence            233566789999876666678999999997432          44555543322111100   0135788888876   4


Q ss_pred             CCCe----------EEEEECcC--ccceeeec
Q 023772          248 EDGY----------IYFWDLVD--ASVVAKFK  267 (277)
Q Consensus       248 ~d~~----------i~iwd~~~--~~~~~~~~  267 (277)
                      .|+.          -.+.|+.-  .++++...
T Consensus       408 kdrfl~vgpl~pe~~qlidisg~~m~l~~d~p  439 (459)
T d1fwxa2         408 KDRFLNVGPLKPENDQLIDISGDKMVLVHDGP  439 (459)
T ss_dssp             TTSSCCCCSSCCEEEEEEECSSSSCEEEEEEE
T ss_pred             cccccCCCCCCCccceEEEcCCCeeEEEeccC
Confidence            4543          34677743  33444443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.63  E-value=0.0095  Score=50.09  Aligned_cols=58  Identities=14%  Similarity=0.042  Sum_probs=41.4

Q ss_pred             eEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeec
Q 023772          207 TLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFK  267 (277)
Q Consensus       207 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~  267 (277)
                      .|.-||+.+++.+..+....-   ...-.++..+.+|+.|+.||.++.+|.++|+.+-+++
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~p---~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~  515 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVSP---WNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP  515 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cEEEeCCCCCceEeeecCCCC---CCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEE
Confidence            467788888888776653311   1111234457788889999999999999999996665

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.55  E-value=0.0087  Score=44.92  Aligned_cols=206  Identities=5%  Similarity=-0.021  Sum_probs=123.9

Q ss_pred             eeccCCcEEEEEEeCCCCEEEEE-eCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEE-EEeCCCcEEEEECCC
Q 023772           14 LKGHEGAVLAARFNGDGNYCLSC-GKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLI-SCGGDRQIFYWDVST   91 (277)
Q Consensus        14 l~~H~~~V~~~~~~~~~~~l~s~-s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-t~s~d~~v~~wd~~~   91 (277)
                      +..+...+..++|+...+.+.-. ..++.|+..++..+.....+......+..+++..-++.|+ +-...+.|.+.++..
T Consensus        31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg  110 (263)
T d1npea_          31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (263)
T ss_dssp             EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCC
Confidence            44555668889999877766644 5667788888765544444444345788999987676665 445678999999876


Q ss_pred             CceeEEeecccCceeEEEEecCCCEEEEEeCC-CcEEEE--eCccCCCcceEeeccccCcEEEEEec--CCeE-EEeecC
Q 023772           92 GRVIRKFRGHESEVNAVKFNEYSSVVVSAGYD-QSLRAW--DCRSHSTEPIQIIDSFQDSVMSVCLT--KTEI-IGGSVD  165 (277)
Q Consensus        92 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d-~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~g~~d  165 (277)
                      ..+..-+.........+++.|...+++-.... +..+++  ++...  ...............++++  .+.+ ++-...
T Consensus       111 ~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~--~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~  188 (263)
T d1npea_         111 TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT--NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGT  188 (263)
T ss_dssp             CSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC--CCEEEECTTCSCEEEEEEETTTTEEEEEETTT
T ss_pred             ceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCC--CceeeeeecccccceEEEeecCcEEEEEeCCC
Confidence            55432233334567889999877766544322 333444  44322  2222222222233445554  3444 444556


Q ss_pred             CcEEEEEccCCcc--cccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEe
Q 023772          166 GTVRTFDIRVGRE--LSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYK  223 (277)
Q Consensus       166 ~~i~i~d~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~  223 (277)
                      +.|...|+.....  +..... ....+++. ++..+.+-...+.|...|..+++.++.+.
T Consensus       189 ~~I~~~~~~g~~~~~v~~~~~-~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~  246 (263)
T d1npea_         189 HRAECLNPAQPGRRKVLEGLQ-YPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (263)
T ss_dssp             TEEEEEETTEEEEEEEEECCC-SEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             CEEEEEECCCCCeEEEECCCC-CcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEEC
Confidence            7788888754322  222222 34577776 44444555567889999998888776654

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.52  E-value=0.019  Score=48.09  Aligned_cols=235  Identities=12%  Similarity=0.114  Sum_probs=131.7

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCeeEEEEeccCcc----EEEEEEcCCCCEEEEEe------CCCcEEEEECCCCceeEEee
Q 023772           30 GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGRE----VRDVHVTADNSKLISCG------GDRQIFYWDVSTGRVIRKFR   99 (277)
Q Consensus        30 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~----v~~~~~~~~~~~l~t~s------~d~~v~~wd~~~~~~~~~~~   99 (277)
                      +..++.+..|+.|.-.|..+|+.+-.+..+...    ++..-...+ ..++.++      ..|.|.-+|.++|+.+.++.
T Consensus       117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~-~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  195 (560)
T d1kv9a2         117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVK-GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (560)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeec-CcccccccceeccccceEEEEECCCceEEeeee
Confidence            346777788899999999999888776543211    111111112 3344432      23679999999999987764


Q ss_pred             cc------------------------------cCcee-EEEEecCCCEEEEEeCC-------------------CcEEEE
Q 023772          100 GH------------------------------ESEVN-AVKFNEYSSVVVSAGYD-------------------QSLRAW  129 (277)
Q Consensus       100 ~h------------------------------~~~v~-~i~~~~~~~~l~s~~~d-------------------~~i~iw  129 (277)
                      .-                              ...++ .+.+.+...++..+..+                   ..|.-.
T Consensus       196 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAl  275 (560)
T d1kv9a2         196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI  275 (560)
T ss_dssp             SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred             eccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEe
Confidence            20                              11222 24555555555443221                   223333


Q ss_pred             eCccCCCcceEeeccc--------c-CcEEEEEecCC---eEEEeecCCcEEEEEccCCcccccC---------------
Q 023772          130 DCRSHSTEPIQIIDSF--------Q-DSVMSVCLTKT---EIIGGSVDGTVRTFDIRVGRELSDD---------------  182 (277)
Q Consensus       130 d~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~---~~~~g~~d~~i~i~d~~~~~~~~~~---------------  182 (277)
                      |+++...........+        . .....+...+.   .++.+..+|.+.++|-.+++.+...               
T Consensus       276 d~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~  355 (560)
T d1kv9a2         276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT  355 (560)
T ss_dssp             CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred             cCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhh
Confidence            4443322111111111        0 11122222322   2566788888999998777643110               


Q ss_pred             ----------------------CC-CCeeEEEEeCCCCEEEEEecC----------------------------------
Q 023772          183 ----------------------LG-QPVNCISMSNDGNCILASCLD----------------------------------  205 (277)
Q Consensus       183 ----------------------~~-~~v~~~~~s~~~~~l~~~~~d----------------------------------  205 (277)
                                            .+ ......+++|+...+.....+                                  
T Consensus       356 ~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  435 (560)
T d1kv9a2         356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV  435 (560)
T ss_dssp             CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred             ccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcc
Confidence                                  00 112345678877766654422                                  


Q ss_pred             --CeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeecc
Q 023772          206 --STLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKA  268 (277)
Q Consensus       206 --~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~  268 (277)
                        |.|.-||+.+++.+..+..... .  ..-.+...+.+++.|+.||.++.+|.++|+.+=+++-
T Consensus       436 ~~G~l~A~D~~tGk~~W~~~~~~~-~--~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l  497 (560)
T d1kv9a2         436 VSGALLAWDPVKQKAAWKVPYPTH-W--NGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA  497 (560)
T ss_dssp             CEEEEEEEETTTTEEEEEEEESSS-C--CCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cccceEEEeCCCCeEeeeccCCCC-C--CCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEEC
Confidence              4678899999988876653211 1  1112333466788899999999999999999866663

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.36  E-value=0.021  Score=44.89  Aligned_cols=71  Identities=14%  Similarity=0.223  Sum_probs=49.1

Q ss_pred             EEEEeCCCCEEEEEeCC-CcEEEEcCCCCeeEEEEecc-CccEEEEEEcCCCCEEEEEeCC------CcEEEEECCCCc
Q 023772           23 AARFNGDGNYCLSCGKD-RTIRLWNPHRGIHIKTYKSH-GREVRDVHVTADNSKLISCGGD------RQIFYWDVSTGR   93 (277)
Q Consensus        23 ~~~~~~~~~~l~s~s~d-~~v~iwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~t~s~d------~~v~~wd~~~~~   93 (277)
                      ...+.++|.+++.|+.+ ..+.+||..+......-... ...-..++..++++.++.|+.+      ..+.+||..+.+
T Consensus        80 ~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3          80 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             EEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            45678999999988765 68999998887654321111 1123456777888988888753      368999987654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.23  E-value=0.029  Score=44.00  Aligned_cols=110  Identities=14%  Similarity=0.162  Sum_probs=70.4

Q ss_pred             EEEeCCCCEEEEEeCCC-----------cEEEEcCCCCeeEE--E-EeccCccEEEEEEcCCCCEEEEEeCC-CcEEEEE
Q 023772           24 ARFNGDGNYCLSCGKDR-----------TIRLWNPHRGIHIK--T-YKSHGREVRDVHVTADNSKLISCGGD-RQIFYWD   88 (277)
Q Consensus        24 ~~~~~~~~~l~s~s~d~-----------~v~iwd~~~~~~~~--~-~~~h~~~v~~~~~~~~~~~l~t~s~d-~~v~~wd   88 (277)
                      .....+|+.++-|+.+.           .+.+||+.+++...  . -..|........+.++++.++.|+.+ .++.+||
T Consensus        25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd  104 (387)
T d1k3ia3          25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYD  104 (387)
T ss_dssp             EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEE
T ss_pred             EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEec
Confidence            33446788888777431           36789998875432  1 12233345567888999999888765 6899999


Q ss_pred             CCCCceeE--EeecccCceeEEEEecCCCEEEEEeCC------CcEEEEeCccC
Q 023772           89 VSTGRVIR--KFRGHESEVNAVKFNEYSSVVVSAGYD------QSLRAWDCRSH  134 (277)
Q Consensus        89 ~~~~~~~~--~~~~h~~~v~~i~~~~~~~~l~s~~~d------~~i~iwd~~~~  134 (277)
                      ..+..-..  .... ...-......+++++++.++.+      ..+.+||+.+.
T Consensus       105 ~~~~~w~~~~~~~~-~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3         105 SSSDSWIPGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             GGGTEEEECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             CccCcccccccccc-cccccceeeecCCceeeeccccccccccceeeeecCCCC
Confidence            88754321  1111 1122356677888998888753      36889998653

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.22  E-value=0.024  Score=42.84  Aligned_cols=222  Identities=11%  Similarity=0.159  Sum_probs=137.4

Q ss_pred             EEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeEEeecc
Q 023772           23 AARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVST-GRVIRKFRGH  101 (277)
Q Consensus        23 ~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~-~~~~~~~~~h  101 (277)
                      +.-.+|..+.|+--+ ..++.|+|+++...++.+.-. .+|.-..|..+. .|+-.. +..|+-|+++. ..+.+-|..|
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~~-~L~lVT-~taVYHW~~~g~s~P~k~fdR~  142 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRH  142 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEESSSS-EEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcC-CCcEEEEecCCC-EEEEEc-CCceEEEcccCCCCchhhhhhc
Confidence            455678888877554 569999999999988888754 577778887554 343332 56799999964 3456666555


Q ss_pred             c----CceeEEEEecCCCEEEEEe-------CCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC----eEEE----e
Q 023772          102 E----SEVNAVKFNEYSSVVVSAG-------YDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT----EIIG----G  162 (277)
Q Consensus       102 ~----~~v~~i~~~~~~~~l~s~~-------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~----g  162 (277)
                      .    ..|-.-..+++.+.++-.|       -.|.+.+|....   ...+.+++|......+.+.++    .+++    +
T Consensus       143 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er---~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~  219 (327)
T d1utca2         143 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR---KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRG  219 (327)
T ss_dssp             GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT---TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEE
T ss_pred             ccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc---CcCccccceeeeeEEEEcCCCCCCceEEEEEECC
Confidence            3    4666666777777654432       247788887653   345556666555444444322    1221    2


Q ss_pred             ecCCcEEEEEccCCcc----cc----------cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccc
Q 023772          163 SVDGTVRTFDIRVGRE----LS----------DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICK  228 (277)
Q Consensus       163 ~~d~~i~i~d~~~~~~----~~----------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~  228 (277)
                      ...+++.+-++.....    +.          ...++-.-+|.+++.-..+..-..-|.|++||++++.++..-+-....
T Consensus       220 ~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~  299 (327)
T d1utca2         220 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGET  299 (327)
T ss_dssp             TTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             CCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCc
Confidence            2336788888765321    10          111234567788888888888889999999999999998654432222


Q ss_pred             eeeeeeEecCCCceEEeecCCCeEE
Q 023772          229 SFKTDCCLTNSDAHVTGGSEDGYIY  253 (277)
Q Consensus       229 ~~~~~~~~~~~~~~l~sgs~d~~i~  253 (277)
                      .+ +.+.....+..++. ..+|+|.
T Consensus       300 iF-~~a~~~~~~Gi~~V-Nr~GqVl  322 (327)
T d1utca2         300 IF-VTAPHEATAGIIGV-NRKGQVL  322 (327)
T ss_dssp             EE-EEEEETTTTEEEEE-ETTSEEE
T ss_pred             eE-EeccCCCCceEEEE-CCCCeEE
Confidence            22 22222333444444 3566654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.19  E-value=0.023  Score=42.11  Aligned_cols=207  Identities=12%  Similarity=0.067  Sum_probs=104.9

Q ss_pred             CCccccccceeeccCCcEEEEEEeCCCCEEEEEe-CCC-----cEEEEcCCCCeeEEEEe------ccCccEEEEEEcCC
Q 023772            4 SDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCG-KDR-----TIRLWNPHRGIHIKTYK------SHGREVRDVHVTAD   71 (277)
Q Consensus         4 ~~~~~~~~~~l~~H~~~V~~~~~~~~~~~l~s~s-~d~-----~v~iwd~~~~~~~~~~~------~h~~~v~~~~~~~~   71 (277)
                      .+++..+...|..+.+.+...+|||||++|+-.. .++     .|.+++..+++......      ..........|+|+
T Consensus        26 ~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spd  105 (281)
T d1k32a2          26 HDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPD  105 (281)
T ss_dssp             EETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTT
T ss_pred             EECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCC
Confidence            3455556667788888999999999999998542 222     36666777765443211      11234567889999


Q ss_pred             CCEEEEEeCC------CcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCC-----------cEEEEeCccC
Q 023772           72 NSKLISCGGD------RQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQ-----------SLRAWDCRSH  134 (277)
Q Consensus        72 ~~~l~t~s~d------~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~-----------~i~iwd~~~~  134 (277)
                      ++.|+.....      ..+...+.+.+.....   +........+.+.+..++....+.           ..........
T Consensus       106 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (281)
T d1k32a2         106 GNLIISTDAMQPFSSMTCLYRVENDGINFVPL---NLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSG  182 (281)
T ss_dssp             CCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC---CSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETT
T ss_pred             CCEEEEEEccCCCccceeeeeecCCCceeEEe---cCCccceeeecCCCeEEEeeccccceeeeeccCCcceeeeecccc
Confidence            9988765332      2345555554443221   111222222222222222211110           0111111000


Q ss_pred             C-------CcceEeeccccCcEEEEEecCCeEEEeecCCcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecCCe
Q 023772          135 S-------TEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDST  207 (277)
Q Consensus       135 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~  207 (277)
                      .       ............... .....      .....|.++|+..+...............|+|+|+.|+-.. ++.
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~l~~~d~~g~~~~~lt~~~~~~~~~~SpDG~~I~f~~-~~~  254 (281)
T d1k32a2         183 AFKKIVDMSTHVSSPVIVGHRIY-FITDI------DGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSK-GGS  254 (281)
T ss_dssp             EEEEEECCSSCCEEEEEETTEEE-EEECT------TSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEE-TTE
T ss_pred             ceeeccCCccccceeeeeccccc-eeccc------ccccceEEEeCCCCceEEeecCCCcccccCcCCCCEEEEEe-CCE
Confidence            0       000001111112221 22121      12335667777665433222222223356899999988854 688


Q ss_pred             EEEEECCCCceEEE
Q 023772          208 LRLLDRSTGELLQE  221 (277)
Q Consensus       208 i~~wd~~~~~~~~~  221 (277)
                      |+++|+.+++..+.
T Consensus       255 l~~~d~~~g~~~~i  268 (281)
T d1k32a2         255 IYIFNPDTEKIEKI  268 (281)
T ss_dssp             EEEECTTTCCEEEC
T ss_pred             EEEEECCCCCEEEe
Confidence            99999999988653

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.73  E-value=0.098  Score=41.89  Aligned_cols=245  Identities=18%  Similarity=0.159  Sum_probs=126.8

Q ss_pred             ccCCcEEEEEEeCCCCEEE-EE----eCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCC---------
Q 023772           16 GHEGAVLAARFNGDGNYCL-SC----GKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGD---------   81 (277)
Q Consensus        16 ~H~~~V~~~~~~~~~~~l~-s~----s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d---------   81 (277)
                      ++.-.+...+++|++++|+ +-    +.-..+++.|+.+++.+...-. ......+.|.++++.|+-...|         
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~  200 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEEeccccCccccc
Confidence            3333455678899999888 32    3335789999999987642211 1122568899999877654322         


Q ss_pred             -------CcEEEEECCCCce--eEEeecc--cCceeEEEEecCCCEEEEEe---CCCcEEEE--eCccCCC------cce
Q 023772           82 -------RQIFYWDVSTGRV--IRKFRGH--ESEVNAVKFNEYSSVVVSAG---YDQSLRAW--DCRSHST------EPI  139 (277)
Q Consensus        82 -------~~v~~wd~~~~~~--~~~~~~h--~~~v~~i~~~~~~~~l~s~~---~d~~i~iw--d~~~~~~------~~~  139 (277)
                             ..|..+.+.+...  +..+...  ...+..+..++++++++...   .+....+|  |+.....      ...
T Consensus       201 ~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  280 (430)
T d1qfma1         201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV  280 (430)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred             ccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCccccccccccee
Confidence                   2577888766532  2223332  33456677788888865432   23344444  4332211      112


Q ss_pred             EeeccccCcEEEEEecCCeEEEee----cCCcEEEEEccCCcc-----cccCCCCCeeEEEEeCCCCEEEEEe-cCC--e
Q 023772          140 QIIDSFQDSVMSVCLTKTEIIGGS----VDGTVRTFDIRVGRE-----LSDDLGQPVNCISMSNDGNCILASC-LDS--T  207 (277)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~g~----~d~~i~i~d~~~~~~-----~~~~~~~~v~~~~~s~~~~~l~~~~-~d~--~  207 (277)
                      ............+...+..+..-+    .++.|...++.....     +.......+..-.+...+.+|+..- .++  .
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~  360 (430)
T d1qfma1         281 KLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNT  360 (430)
T ss_dssp             EEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEE
T ss_pred             EeecccccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeE
Confidence            222222223333333444433222    234555566554321     1111223344444454555666554 554  5


Q ss_pred             EEEEECCCCceEEEEeccccceeeeeeEecCCCce--EEee--cCCCeEEEEECcCccce
Q 023772          208 LRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAH--VTGG--SEDGYIYFWDLVDASVV  263 (277)
Q Consensus       208 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~sg--s~d~~i~iwd~~~~~~~  263 (277)
                      |+++++..++....+.......  ......++...  +...  ..=.+++-||+.+++..
T Consensus       361 l~v~~~~~~~~~~~~~~~~~sv--~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~~  418 (430)
T d1qfma1         361 LQLHDLATGALLKIFPLEVGSV--VGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELE  418 (430)
T ss_dssp             EEEEETTTCCEEEEECCCSSEE--EEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSCC
T ss_pred             EEEEECCCCcEEEecCCCCceE--eeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCcc
Confidence            7889998877654433222111  11112233322  2222  23468999999998764

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.66  E-value=0.14  Score=42.72  Aligned_cols=59  Identities=24%  Similarity=0.314  Sum_probs=38.0

Q ss_pred             CcEEEEEccCCccccc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEec
Q 023772          166 GTVRTFDIRVGRELSD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKG  224 (277)
Q Consensus       166 ~~i~i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~  224 (277)
                      |.|.-+|+.+++..-. ....+..+-.+...+..+++|+.|+.++.+|.++|+.+.++.-
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l  503 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM  503 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEEC
Confidence            3466666666654321 1122222112233566788899999999999999999988864

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.48  E-value=0.16  Score=42.55  Aligned_cols=197  Identities=15%  Similarity=0.172  Sum_probs=112.5

Q ss_pred             CCCEEEEEeCCCcEEEEEC-CCCceeEEeecccC-----------ceeEEEEecC----CCEEEEEeCCCcEEEEeCccC
Q 023772           71 DNSKLISCGGDRQIFYWDV-STGRVIRKFRGHES-----------EVNAVKFNEY----SSVVVSAGYDQSLRAWDCRSH  134 (277)
Q Consensus        71 ~~~~l~t~s~d~~v~~wd~-~~~~~~~~~~~h~~-----------~v~~i~~~~~----~~~l~s~~~d~~i~iwd~~~~  134 (277)
                      ++..+++++.++.+...|. ++|+.+.++.....           .-+.+++.++    ..+++.++.|+.+.-.|.++.
T Consensus        62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG  141 (596)
T d1w6sa_          62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (596)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccC
Confidence            3444455555677887886 57888877642110           1133455433    346888889999988888765


Q ss_pred             CCcceEeecc-ccC-cE-EEEEecCCeEEEeec------CCcEEEEEccCCcccccC-----------------------
Q 023772          135 STEPIQIIDS-FQD-SV-MSVCLTKTEIIGGSV------DGTVRTFDIRVGRELSDD-----------------------  182 (277)
Q Consensus       135 ~~~~~~~~~~-~~~-~~-~~~~~~~~~~~~g~~------d~~i~i~d~~~~~~~~~~-----------------------  182 (277)
                      +......... ... .+ ..-.+..+.++.|..      .|.|+-||.++++.+-..                       
T Consensus       142 ~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g  221 (596)
T d1w6sa_         142 ETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYG  221 (596)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred             ceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCcccccccccccccccccc
Confidence            4322211110 000 00 011122445555543      478998999888653210                       


Q ss_pred             ----------------C-CCCeeEEEEeCCCCEEEEEec----------------CCeEEEEECCCCceEEEEeccccce
Q 023772          183 ----------------L-GQPVNCISMSNDGNCILASCL----------------DSTLRLLDRSTGELLQEYKGHICKS  229 (277)
Q Consensus       183 ----------------~-~~~v~~~~~s~~~~~l~~~~~----------------d~~i~~wd~~~~~~~~~~~~~~~~~  229 (277)
                                      . ......+++++....+..+..                ...+.-.|..+|+.+..|+......
T Consensus       222 ~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~  301 (596)
T d1w6sa_         222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDE  301 (596)
T ss_dssp             CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCS
T ss_pred             ccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccccccceeccc
Confidence                            0 112334577777776666533                2347788999999988776422111


Q ss_pred             eeeee--------EecCCC---ceEEeecCCCeEEEEECcCccceeeec
Q 023772          230 FKTDC--------CLTNSD---AHVTGGSEDGYIYFWDLVDASVVAKFK  267 (277)
Q Consensus       230 ~~~~~--------~~~~~~---~~l~sgs~d~~i~iwd~~~~~~~~~~~  267 (277)
                      ...++        ....++   ..++.+..+|.++++|..+|+++...+
T Consensus       302 Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~  350 (596)
T d1w6sa_         302 WDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK  350 (596)
T ss_dssp             SCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeecc
Confidence            11111        111233   357788999999999999999985443

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.40  E-value=0.2  Score=41.58  Aligned_cols=59  Identities=15%  Similarity=0.223  Sum_probs=39.9

Q ss_pred             CcEEEEEccCCccccc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEec
Q 023772          166 GTVRTFDIRVGRELSD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKG  224 (277)
Q Consensus       166 ~~i~i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~  224 (277)
                      |.|.-+|+.+++..-. ....+...-.+...+..+++|+.||.++.+|..+|+.+.++..
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l  497 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA  497 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEEC
Confidence            4566677776654322 2222222223344677888999999999999999999988864

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.35  E-value=0.043  Score=45.98  Aligned_cols=59  Identities=22%  Similarity=0.263  Sum_probs=41.0

Q ss_pred             CcEEEEEccCCccccc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEec
Q 023772          166 GTVRTFDIRVGRELSD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKG  224 (277)
Q Consensus       166 ~~i~i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~  224 (277)
                      |.+.-||+.+++..-. ....+...-.++..|..+++|+.|+.++.+|.++|+.+.++..
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~  516 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT  516 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEEC
Confidence            4566778777765422 2222222223345677899999999999999999999988864

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.16  Score=37.73  Aligned_cols=205  Identities=10%  Similarity=0.005  Sum_probs=114.7

Q ss_pred             ccCCcEEEEEEeCCCCEEEEE-eCCCcEEEEcCCCC----eeEEEEeccCccEEEEEEcCCCCEEEEE-eCCCcEEEEEC
Q 023772           16 GHEGAVLAARFNGDGNYCLSC-GKDRTIRLWNPHRG----IHIKTYKSHGREVRDVHVTADNSKLISC-GGDRQIFYWDV   89 (277)
Q Consensus        16 ~H~~~V~~~~~~~~~~~l~s~-s~d~~v~iwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~t~-s~d~~v~~wd~   89 (277)
                      .....+.+++|++..+.|.=. ..++.|+.-++...    .....+......+..+++.+.++.|+-+ ...++|.+.++
T Consensus        27 ~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~  106 (266)
T d1ijqa1          27 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT  106 (266)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEec
Confidence            344567789999877766644 44566665554321    1122233333567789998766666544 56678999999


Q ss_pred             CCCceeEEeecccCceeEEEEecCCCEEEEEe--CCCcEEEEeCccCCCcceEeeccccCcEEEEEec--CCeE-EEeec
Q 023772           90 STGRVIRKFRGHESEVNAVKFNEYSSVVVSAG--YDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT--KTEI-IGGSV  164 (277)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~g~~  164 (277)
                      .................++.+.|...++.-..  ..+.|...++....  ........-.....+.++  ...+ ++-..
T Consensus       107 ~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~--~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~  184 (266)
T d1ijqa1         107 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--IYSLVTENIQWPNGITLDLLSGRLYWVDSK  184 (266)
T ss_dssp             TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC--EEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCc--eecccccccceeeEEEeeccccEEEEecCC
Confidence            87665555555556678899988655554443  33445555554322  222222222233445554  3444 44456


Q ss_pred             CCcEEEEEccCCcc--cccCC--CCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEe
Q 023772          165 DGTVRTFDIRVGRE--LSDDL--GQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYK  223 (277)
Q Consensus       165 d~~i~i~d~~~~~~--~~~~~--~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~  223 (277)
                      .+.|...|+.....  +....  ......+++. ++..+.+-..++.|+..+..+++..+.+.
T Consensus       185 ~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~~~~~~~  246 (266)
T d1ijqa1         185 LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  246 (266)
T ss_dssp             TTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             cCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCCcceEEEE
Confidence            67888888754321  11111  1235567766 34444454567788777877766554443

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.97  E-value=0.21  Score=37.64  Aligned_cols=218  Identities=10%  Similarity=0.203  Sum_probs=126.8

Q ss_pred             eCCCcEEEEcCCCCe-eEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCC
Q 023772           37 GKDRTIRLWNPHRGI-HIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSS  115 (277)
Q Consensus        37 s~d~~v~iwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~  115 (277)
                      +....+.|-|+..+. ..+.-...    .+.-.+|..+.|+-=+ ..++.+||+++.+.++.+.- ..+|.--.|-.+..
T Consensus        42 ~~~~~VvIidl~n~~~~~Rrpi~A----dsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~~  115 (327)
T d1utca2          42 GEQAQVVIIDMNDPSNPIRRPISA----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNT  115 (327)
T ss_dssp             TTEEEEEEEETTSTTSCEEEECCC----SEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEESSSSE
T ss_pred             CCCceEEEEECCCCCcceecccch----hhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEc-CCCcEEEEecCCCE
Confidence            344678888987654 23322222    3445567777666544 56899999999998888774 44665577765543


Q ss_pred             EEEEEeCCCcEEEEeCccCCCcceEeeccccC----cEEEEEecCCe---EEEe------ecCCcEEEEEccCCcc-ccc
Q 023772          116 VVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQD----SVMSVCLTKTE---IIGG------SVDGTVRTFDIRVGRE-LSD  181 (277)
Q Consensus       116 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---~~~g------~~d~~i~i~d~~~~~~-~~~  181 (277)
                       |+-.. +..|+-|++... ..+...++.+..    .+..+..+++.   +++|      +..|.+.+|..+.... ...
T Consensus       116 -L~lVT-~taVYHW~~~g~-s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ie  192 (327)
T d1utca2         116 -VALVT-DNAVYHWSMEGE-SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIE  192 (327)
T ss_dssp             -EEEEC-SSEEEEEESSSS-CCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEEC
T ss_pred             -EEEEc-CCceEEEcccCC-CCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCcccc
Confidence             33333 456999998643 356666655432    35555555443   2222      1236677888765421 111


Q ss_pred             CC------------CCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCc---------eEEEE-eccccceeeeeeEecCC
Q 023772          182 DL------------GQPVNCISMSNDGNCILASCLDSTLRLLDRSTGE---------LLQEY-KGHICKSFKTDCCLTNS  239 (277)
Q Consensus       182 ~~------------~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~---------~~~~~-~~~~~~~~~~~~~~~~~  239 (277)
                      .+            ..+..-++|...      +...+.+++.++....         .+..+ .......+......++.
T Consensus       193 Ghaa~F~~~~~~g~~~~~~lf~fa~r------~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~k  266 (327)
T d1utca2         193 GHAASFAQFKMEGNAEESTLFCFAVR------GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK  266 (327)
T ss_dssp             CSEEEEEEECCTTCSSCEEEEEEEEE------ETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETT
T ss_pred             ceeeeeEEEEcCCCCCCceEEEEEEC------CCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeecc
Confidence            11            112222333221      2233688888875421         11111 11122345556667787


Q ss_pred             CceEEeecCCCeEEEEECcCccceeeeccC
Q 023772          240 DAHVTGGSEDGYIYFWDLVDASVVAKFKAH  269 (277)
Q Consensus       240 ~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h  269 (277)
                      ...+..-+.-|.|.+||++++.++..-+--
T Consensus       267 ygiiyviTK~G~i~lyDleTgt~i~~nRIs  296 (327)
T d1utca2         267 HDVVFLITKYGYIHLYDLETGTCIYMNRIS  296 (327)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             CCEEEEEecCcEEEEEEcccccEEEEeecC
Confidence            778888889999999999999998665543

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.92  E-value=0.37  Score=40.13  Aligned_cols=60  Identities=27%  Similarity=0.399  Sum_probs=43.7

Q ss_pred             CeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeecc
Q 023772          206 STLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKA  268 (277)
Q Consensus       206 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~  268 (277)
                      |.|.-+|+.+++.+..+.... ..  ..-.++..+.+++.|+.||.++.+|.++|+.+-+++-
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~-p~--~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~  525 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL-PL--WAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CC--CSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CeEEEEcCCCCcEEeecCCCC-CC--ccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEEC
Confidence            568888999998887765432 11  1112344577888899999999999999999976663

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.91  E-value=0.47  Score=34.97  Aligned_cols=206  Identities=6%  Similarity=-0.021  Sum_probs=118.8

Q ss_pred             EeccCccEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEE-EEeCCCcEEEEeCcc
Q 023772           56 YKSHGREVRDVHVTADNSKLISC-GGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVV-SAGYDQSLRAWDCRS  133 (277)
Q Consensus        56 ~~~h~~~v~~~~~~~~~~~l~t~-s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~-s~~~d~~i~iwd~~~  133 (277)
                      +..+...+..++|...+++|+-+ ..++.|+..+++.+............+.++++...+..|. +-...+.|...++..
T Consensus        31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg  110 (263)
T d1npea_          31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (263)
T ss_dssp             EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCC
Confidence            33444567889999887777654 4567899888876654443433345678899987666555 445567898888765


Q ss_pred             CCCcceEeeccccCcEEEEEecCC--eE-EEeecCCc--EEEEEccCCc--ccccCCCCCeeEEEEeCCCCEE-EEEecC
Q 023772          134 HSTEPIQIIDSFQDSVMSVCLTKT--EI-IGGSVDGT--VRTFDIRVGR--ELSDDLGQPVNCISMSNDGNCI-LASCLD  205 (277)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~g~~d~~--i~i~d~~~~~--~~~~~~~~~v~~~~~s~~~~~l-~~~~~d  205 (277)
                      ...  .............+.+++.  .+ .+-...+.  |..-++....  .+....-...+.+++++.++.| .+-...
T Consensus       111 ~~~--~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~  188 (263)
T d1npea_         111 TQR--RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGT  188 (263)
T ss_dssp             CSC--EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTT
T ss_pred             ceE--EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCC
Confidence            432  2222222234455555543  23 23222222  3333443221  1211222456889999887766 444567


Q ss_pred             CeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeec
Q 023772          206 STLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFK  267 (277)
Q Consensus       206 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~  267 (277)
                      +.|...|+........+.+...   ....++. ++.+..+-...+.|...|..+++.++.+.
T Consensus       189 ~~I~~~~~~g~~~~~v~~~~~~---P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~  246 (263)
T d1npea_         189 HRAECLNPAQPGRRKVLEGLQY---PFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (263)
T ss_dssp             TEEEEEETTEEEEEEEEECCCS---EEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             CEEEEEECCCCCeEEEECCCCC---cEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEEC
Confidence            8899999975544333443221   1223333 33344454567789889998888776653

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.28  E-value=0.67  Score=34.02  Aligned_cols=104  Identities=10%  Similarity=-0.017  Sum_probs=47.9

Q ss_pred             cCCeEEEeecC-----CcEEEEEccCCcccccC---CCCCeeEEEEeCCCCEEEEEecC-----CeEEEEECCCCceEEE
Q 023772          155 TKTEIIGGSVD-----GTVRTFDIRVGRELSDD---LGQPVNCISMSNDGNCILASCLD-----STLRLLDRSTGELLQE  221 (277)
Q Consensus       155 ~~~~~~~g~~d-----~~i~i~d~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~d-----~~i~~wd~~~~~~~~~  221 (277)
                      ....++.|+.+     ..+..||....+-....   ....-.+.... .+..++.|+.+     .....+|..+.+... 
T Consensus       148 ~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~-  225 (288)
T d1zgka1         148 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTF-  225 (288)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEE-
T ss_pred             eecceEecCcccccccceEEEeeccccccccccccccccccccccce-eeeEEEecCccccccccceeeeeecceeeec-
Confidence            33344445443     34677887655322111   11111223332 34555555443     245677877655432 


Q ss_pred             EeccccceeeeeeEecCCCceEEeecCCC-----eEEEEECcCcc
Q 023772          222 YKGHICKSFKTDCCLTNSDAHVTGGSEDG-----YIYFWDLVDAS  261 (277)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~l~sgs~d~-----~i~iwd~~~~~  261 (277)
                      ............++. .++++++.|+.++     .+.+||+.+.+
T Consensus       226 ~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         226 VAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             CCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             ccCccCcccceEEEE-ECCEEEEEecCCCCeecceEEEEECCCCE
Confidence            211111111122222 3566666554333     37899998754

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.15  E-value=1.3  Score=36.73  Aligned_cols=59  Identities=19%  Similarity=0.349  Sum_probs=41.7

Q ss_pred             CcEEEEEccCCccccc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEec
Q 023772          166 GTVRTFDIRVGRELSD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKG  224 (277)
Q Consensus       166 ~~i~i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~  224 (277)
                      |.|.-+|+.+++..-. ....++..-.++..|..+++|+.||.++-+|.++|+.+.++..
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~  525 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEEC
Confidence            5677788877764322 2223333223445677888999999999999999999998874

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.99  E-value=0.78  Score=33.73  Aligned_cols=225  Identities=8%  Similarity=-0.016  Sum_probs=122.0

Q ss_pred             CcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCc---eeEE-eecccCceeEEEEecCC
Q 023772           40 RTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISC-GGDRQIFYWDVSTGR---VIRK-FRGHESEVNAVKFNEYS  114 (277)
Q Consensus        40 ~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~-s~d~~v~~wd~~~~~---~~~~-~~~h~~~v~~i~~~~~~  114 (277)
                      ..|+..++.+......+ .....+.+++|.+..++|+=+ ..++.|+-.++....   .... .......+.++++.+.+
T Consensus        10 ~~I~~~~l~~~~~~~~~-~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~   88 (266)
T d1ijqa1          10 HEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH   88 (266)
T ss_dssp             SSEEEEETTSCCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             CeEEEEECCCCcceeee-CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeecc
Confidence            35777887765443333 345567899999887777654 456667766664321   1122 22233456778888765


Q ss_pred             CEEEE-EeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC--eE-EEe-ecCCcEEEEEccCCc--ccccCCCCCe
Q 023772          115 SVVVS-AGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--EI-IGG-SVDGTVRTFDIRVGR--ELSDDLGQPV  187 (277)
Q Consensus       115 ~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~g-~~d~~i~i~d~~~~~--~~~~~~~~~v  187 (277)
                      ..|.- -...+.|.+.++.....  .............+.+++.  .+ ++. +..+.|...++....  .+....-...
T Consensus        89 ~~lY~~d~~~~~I~v~~~~g~~~--~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p  166 (266)
T d1ijqa1          89 SNIYWTDSVLGTVSVADTKGVKR--KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP  166 (266)
T ss_dssp             TEEEEEETTTTEEEEEETTSSSE--EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCE
T ss_pred             ceEEEEecCCCEEEeEecCCceE--EEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccccccccee
Confidence            55444 45667899998864322  1222222233444554432  22 232 223445555554321  1211222456


Q ss_pred             eEEEEeCCCCEEEEE-ecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeee
Q 023772          188 NCISMSNDGNCILAS-CLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKF  266 (277)
Q Consensus       188 ~~~~~s~~~~~l~~~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~  266 (277)
                      +.+++++.++.|.-+ ...+.|...|+.....................++. ++.+..+-..++.|+-.+..+++..+.+
T Consensus       167 ~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~~~~~~  245 (266)
T d1ijqa1         167 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL  245 (266)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             eEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCCcceEEE
Confidence            889999877655544 66788999998654433333332211222233333 2344445457788888888888766666


Q ss_pred             cc
Q 023772          267 KA  268 (277)
Q Consensus       267 ~~  268 (277)
                      ..
T Consensus       246 ~~  247 (266)
T d1ijqa1         246 AE  247 (266)
T ss_dssp             EC
T ss_pred             Ec
Confidence            54

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=91.75  E-value=2.1  Score=32.82  Aligned_cols=203  Identities=9%  Similarity=0.212  Sum_probs=111.4

Q ss_pred             CCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcC----C--CCEEEEEeC--C--CcEEEEECCC-CceeE
Q 023772           28 GDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTA----D--NSKLISCGG--D--RQIFYWDVST-GRVIR   96 (277)
Q Consensus        28 ~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~----~--~~~l~t~s~--d--~~v~~wd~~~-~~~~~   96 (277)
                      |+..+++...+.+-|.+||+. |+.+..+.  .+.++.+.+-.    .  ...|+.++.  +  .+|.+|.+.. ...+.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            456788888999889999985 77777665  35677766542    2  223455542  2  3577887642 22233


Q ss_pred             Eeecc-------cCceeEEEE--ecC-CC-EEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecC
Q 023772           97 KFRGH-------ESEVNAVKF--NEY-SS-VVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVD  165 (277)
Q Consensus        97 ~~~~h-------~~~v~~i~~--~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d  165 (277)
                      .+...       ...+..+++  ++. +. +++....+|.+..|.+.......+          ..              
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v----------~~--------------  170 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYI----------SG--------------  170 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSE----------EE--------------
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCce----------ee--------------
Confidence            22211       123455555  443 33 355556677777766532111000          00              


Q ss_pred             CcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCC-----CceEEEEec-c-ccceeeeeeEecC
Q 023772          166 GTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRST-----GELLQEYKG-H-ICKSFKTDCCLTN  238 (277)
Q Consensus       166 ~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~-----~~~~~~~~~-~-~~~~~~~~~~~~~  238 (277)
                      ..++-|.+          ...+..+.++++...|+.+-++..+..++...     +..+....+ + ......+..--.+
T Consensus       171 ~lvr~f~~----------~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~  240 (353)
T d1h6la_         171 KKVRAFKM----------NSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAA  240 (353)
T ss_dssp             EEEEEEEC----------SSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECG
T ss_pred             EeeeccCC----------CCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcC
Confidence            01222222          23577888899888899998888777776532     223322222 1 1111122221122


Q ss_pred             --CCceEEeecCCCeEEEEECcC-ccceeeec
Q 023772          239 --SDAHVTGGSEDGYIYFWDLVD-ASVVAKFK  267 (277)
Q Consensus       239 --~~~~l~sgs~d~~i~iwd~~~-~~~~~~~~  267 (277)
                        +|.+|+|.-.|++..+||... ...+..|+
T Consensus       241 ~~~GylivSsQG~n~f~vydr~~~~~~~g~F~  272 (353)
T d1h6la_         241 DGKGYLLASSQGNSSYAIYERQGQNKYVADFQ  272 (353)
T ss_dssp             GGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             CCCeEEEEEcCCCCeEEEEecCCCccccceEE
Confidence              344566655688999999987 46666665

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=91.05  E-value=2.9  Score=33.02  Aligned_cols=75  Identities=15%  Similarity=0.114  Sum_probs=45.5

Q ss_pred             CeeEEEEeCCCCEEEEEe-cCCeEEEEECCCCceE--------EEEeccc-cceeeeeeEecCCCceEEeecCCCeEEEE
Q 023772          186 PVNCISMSNDGNCILASC-LDSTLRLLDRSTGELL--------QEYKGHI-CKSFKTDCCLTNSDAHVTGGSEDGYIYFW  255 (277)
Q Consensus       186 ~v~~~~~s~~~~~l~~~~-~d~~i~~wd~~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~l~sgs~d~~i~iw  255 (277)
                      ....+.++|||+++++++ .+.++-++|++.-..+        ....+.. ..--.+...|..+|.--.|-.-|.+|--|
T Consensus       276 sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfids~v~kw  355 (459)
T d1fwxa2         276 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKW  355 (459)
T ss_dssp             SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEE
T ss_pred             CCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCceEEEEeeccceEEEE
Confidence            355688999999987765 6889999998632110        0011110 00112334566666444455789999999


Q ss_pred             ECcCc
Q 023772          256 DLVDA  260 (277)
Q Consensus       256 d~~~~  260 (277)
                      ++...
T Consensus       356 ~~~~~  360 (459)
T d1fwxa2         356 NIEDA  360 (459)
T ss_dssp             EHHHH
T ss_pred             ecchh
Confidence            98654

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.41  E-value=2.8  Score=30.36  Aligned_cols=23  Identities=17%  Similarity=0.279  Sum_probs=15.6

Q ss_pred             CCCEEEEEecCC-----eEEEEECCCCc
Q 023772          195 DGNCILASCLDS-----TLRLLDRSTGE  217 (277)
Q Consensus       195 ~~~~l~~~~~d~-----~i~~wd~~~~~  217 (277)
                      +++.++.|+.++     .+.+||+.+++
T Consensus       242 ~~~l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         242 QGRIYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCEEEEEecCCCCeecceEEEEECCCCE
Confidence            577777776544     36778887754

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.23  E-value=4.5  Score=31.26  Aligned_cols=137  Identities=12%  Similarity=0.162  Sum_probs=84.5

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEECCC---------CceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeC
Q 023772           61 REVRDVHVTADNSKLISCGGDRQIFYWDVST---------GRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDC  131 (277)
Q Consensus        61 ~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~---------~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~  131 (277)
                      ....-+++++...+++.|+.++ +++-.++.         .......+..-..|..++|+.+  .++. ..++.+..++.
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v-~~~~~l~~~~~  112 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLV-STRNALYSLDL  112 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEE-EESSEEEEEES
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEE-EeCCCEEEEEe
Confidence            3466788998888999888885 66776421         0000111112235788888754  3433 34556777776


Q ss_pred             ccCCCcceEeeccccCcEEEEEecCCeEEEeecCCcEEEEEccCCccccc-------CCCCCeeEEEEeCCCCEEEEEe
Q 023772          132 RSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSD-------DLGQPVNCISMSNDGNCILASC  203 (277)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~  203 (277)
                      ....  ...........+..+.+.+..++....++.+..+++..+.....       .....+.+++|++.|..++++.
T Consensus       113 ~~l~--~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         113 EELS--EFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             SSTT--CEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred             eccc--cccccccccccccceecCCceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeC
Confidence            5422  22222233456777888888888888899999999876642111       1235577888888888777764

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=85.78  E-value=6.5  Score=31.06  Aligned_cols=110  Identities=13%  Similarity=0.135  Sum_probs=62.6

Q ss_pred             eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEe--------ccCccEEEEEEcCC---CCEEEEEe--
Q 023772           13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYK--------SHGREVRDVHVTAD---NSKLISCG--   79 (277)
Q Consensus        13 ~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~--------~h~~~v~~~~~~~~---~~~l~t~s--   79 (277)
                      ++...-..-.+++|.|+|+++++--..|.|++++..++.......        .-.+....++++|+   +.+|....  
T Consensus        21 ~ia~~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~  100 (450)
T d1crua_          21 VILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTF  100 (450)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred             EEECCCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEec
Confidence            333334456699999999999886557999999987765432221        11245678999985   44554321  


Q ss_pred             -----CC----C--cEEEEECCCCc-------ee-EEee-cccCceeEEEEecCCCEEEEEeC
Q 023772           80 -----GD----R--QIFYWDVSTGR-------VI-RKFR-GHESEVNAVKFNEYSSVVVSAGY  122 (277)
Q Consensus        80 -----~d----~--~v~~wd~~~~~-------~~-~~~~-~h~~~v~~i~~~~~~~~l~s~~~  122 (277)
                           .+    .  .+.-+......       .+ .... .....-..|.|.+++.+.++.+.
T Consensus       101 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         101 KNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             ECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence                 11    1  12333322211       11 1111 11123467999999988887764

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=81.75  E-value=9.9  Score=29.55  Aligned_cols=85  Identities=11%  Similarity=0.072  Sum_probs=52.5

Q ss_pred             cCccEEEEEEcCCCCEEEEE-eC----CCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCC----------
Q 023772           59 HGREVRDVHVTADNSKLISC-GG----DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYD----------  123 (277)
Q Consensus        59 h~~~v~~~~~~~~~~~l~t~-s~----d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d----------  123 (277)
                      +.-.+....++|++++++-+ +.    -..++++|+++++.+..... ......+.|.++++.|+-...|          
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~  201 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE  201 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEEeccccCcccccc
Confidence            33345567889999988733 22    24799999999987643221 1122458899999877655433          


Q ss_pred             ------CcEEEEeCccCCCcceEeecc
Q 023772          124 ------QSLRAWDCRSHSTEPIQIIDS  144 (277)
Q Consensus       124 ------~~i~iwd~~~~~~~~~~~~~~  144 (277)
                            ..+..+.+.+...+....+..
T Consensus       202 ~~~~~~~~v~~h~lgt~~~~d~~v~~e  228 (430)
T d1qfma1         202 TSTNLHQKLYYHVLGTDQSEDILCAEF  228 (430)
T ss_dssp             CCCCCCCEEEEEETTSCGGGCEEEECC
T ss_pred             cccCCcceEEEEECCCCcccccccccc
Confidence                  247777766554444444443