Citrus Sinensis ID: 023784

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------
Protein Sequence
MSGSQWNEVALNGEDLSYMLDDETTPVKACGDLAYHATHNGNMSKEPKDCRETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSAGVSASSCDGTDQSLEGWISECLNDPEMNFSTDELLRDFSGASDIQIDISEFSNSPPAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHSPASTLRQNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccEEEEEEEEccccccccccHHHHHHHHcccccccccccccccccccccccccccEEEEEEEEccccEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHcccccHHHHHHccccccccHccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccHHcccccccccHHHHcccccccccccccccccccccccccccHHHHHHHccccccccccHHcccccccccccEEccccccccccccccccEcccccccccccccccccccccccccccccEEEEEEEEEccccccccccHHHHHHHHHccccccccccccccccccccccccEEEEEEEEEccccccEEEEEEccc
Coil and Loop (DISEMBL)
msgsqwnevalngedlsymlddettpvkacgdlayhathngnmskepkdcRETYSQIKRRRMLQFDTqvvdsslcsdempspflksnergesveevlpeasqwttefsagvsasscdgtdqslEGWIseclndpemnfstdellrdfsgasdiqidisefsnsppayddanilqqhctktphnvvfrgrkslirtptklassvaypfafikpcgvhgditlkdinqrihspastlrqntedpsaypksafsgkpvvgktkirteggkgsITIMRTKG
Flexible Loop (DISEMBL)
MSGSQWNEVALNGEDLSYMLDDETTPVKACGDLAYHAthngnmskepkdCRETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSAGVSASSCDGTDQSLEGWISECLNDPEMNFSTDELLRDFSGASDIQIDISEFSNSPPAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHSpastlrqntedpsaypksafsgkpvvgktkirteggkgsitimrtkg
Low Complexity Region (SEG)
MSGSQWNEVALNGEDLSYMLDDETTPVKACGDLAYHATHNGNMSKEPKDCRETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSAGVSASSCDGTDQSLEGWISECLNDPEMNFSTDELLRDFSGASDIQIDISEFSNSPPAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHSPASTLRQNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG
Disordered region (IsUnstruct)
**************DLSYMLDDETTPVKACGDLAYHA*************************************************************************************LEGWISECLNDPEMNFSTDELLRDFSGASDIQIDIS*******AYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQ***************************************************
Disordered Region (DISOPRED)
*SGSQWNEVALNGEDLSYMLDDETTPVKACGDLAYHATHNG********************MLQFD*********************ERGESVEEVLPEASQW********************EGWISECLN**********************************************************************VAYPFAFIKPCGVHGDITLKDINQR*************************KPVVGKTKIRTEGGKGSITIMRTK*
Disordered Region (DISEMBL)
********VALNGEDLSYMLDDETTPVKACGDLAYHATHNGNMSKEPKDCRETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTT*************TDQSLEGWISECLNDPEMNFSTDELLRDFSGASDIQIDISEFSNSPPAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHSPAS**************SAFSGKPVVGKTKIRTEGGKGSITIMRTKG
Disordered Region (DISPRO)
*SGSQWNEVALNGEDLSYMLDDETTPVKACGDLAYHATHNGNMSK***********IKR*R*LQFDT*************************VEEVLPEASQWTT**SAGVSASSCDGTDQSLEGWISECLNDPEMNFSTDELLRDFSGASDIQIDIS*F*************************************KLASSVAYPFAFIKPCGVHGDITLKDINQRIHSPAS****************FSGKPVVGKTKIRTEGGKGSITIMRTKG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSGSQWNEVALNGEDLSYMLDDETTPVKACGDLAYHATHNGNMSKEPKDCRETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSAGVSASSCDGTDQSLEGWISECLNDPEMNFSTDELLRDFSGASDIQIDISEFSNSPPAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHSPASTLRQNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	277	2.2.26 [Sep-21-2011]
Q6NLW5	300	Protein XRI1 OS=Arabidops	no	no	0.953	0.88	0.533	3e-70

>sp|Q6NLW5|XRI1_ARATH Protein XRI1 OS=Arabidopsis thaliana GN=XRI1 PE=1 SV=2

 Score =  265 bits (677), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 144/270 (53%), Positives = 186/270 (68%), Gaps = 6/270 (2%)

Query: 8   EVALNGEDLSYMLDDETTPVKACGDLAYHATHNGNMSKEPKDCRETYSQIKRRRMLQFDT 67
           EV LN ED SYM DDE TPVKAC +L YH T   + +++ +   ET S +KRRRMLQF+ 
Sbjct: 37  EVTLNQEDHSYMFDDENTPVKACSELGYHVT-TEDTNRKMEVHSETRSALKRRRMLQFED 95

Query: 68  QVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSAGVSASSCDGTDQSLEGWI 127
           Q  ++SL S E  S  LKS+ R ++ +E+LPE SQ    FS   SASS +G D   E W 
Sbjct: 96  QP-ETSLFSSESFSAILKSSARDDTFDELLPEGSQLIEGFSEDASASSFEGLDLYAEEWY 154

Query: 128 SECLNDPEMNFSTDELLRDFSGASDIQIDISEFSNSPPAYDDANILQQHCTKTPHNVVFR 187
           ++CLND E     D+L  +F G+ D+Q+DISE+ N PP  +   + Q+  T++  NV+F+
Sbjct: 155 ADCLNDAETPMLPDDL--NF-GSPDVQVDISEYLNVPPETETREV-QRPVTRSSPNVIFK 210

Query: 188 GRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHSPASTLRQNTEDPSAYPK 247
           GRKS  R  +KL SS+ YPFAFIKPCGVHG +TLKDINQ+I +P +  + + E+P+    
Sbjct: 211 GRKSFSRPVSKLPSSIIYPFAFIKPCGVHGGMTLKDINQKIRNPPAKPKAHIEEPAVIQT 270

Query: 248 SAFSGKPVVGKTKIRTEGGKGSITIMRTKG 277
           SAFSGKPVVGKTKIRTEGGKGSITIMRT+G
Sbjct: 271 SAFSGKPVVGKTKIRTEGGKGSITIMRTRG 300

Required for mitotic division of the generative cell nucleus and the development of mature tricellular pollen grains, and for male and female meiosis.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
255560125	293	conserved hypothetical protein [Ricinus	0.967	0.914	0.658	1e-101
224069822	280	predicted protein [Populus trichocarpa]	0.978	0.967	0.624	2e-91
356559041	309	PREDICTED: protein XRI1-like [Glycine ma	0.985	0.883	0.575	1e-82
449453276	304	PREDICTED: protein XRI1-like [Cucumis sa	0.981	0.894	0.578	5e-80
356506666	327	PREDICTED: LOW QUALITY PROTEIN: protein	0.938	0.795	0.565	3e-76
147771043	320	hypothetical protein VITISV_010925 [Viti	0.870	0.753	0.545	7e-76
363808040	298	uncharacterized protein LOC100791247 [Gl	0.953	0.885	0.576	9e-76
356527366	302	PREDICTED: protein XRI1-like [Glycine ma	0.956	0.877	0.548	1e-75
297792063	266	hypothetical protein ARALYDRAFT_494937 [	0.960	1.0	0.544	1e-70
79532088	266	protein XRI1 [Arabidopsis thaliana] gi|4	0.953	0.992	0.533	6e-69

>gi|255560125|ref|XP_002521080.1| conserved hypothetical protein [Ricinus communis] gi|223539649|gb|EEF41231.1| conserved hypothetical protein [Ricinus communis]

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/284 (65%), Positives = 220/284 (77%), Gaps = 16/284 (5%)

Query: 6   WNEVALNGEDLSYMLDDETTPVKACGDLAYHATHNGNMSKEPKDCRETYSQIKRRRMLQF 65
           WNEV LN EDLSYMLD ETTPVKACGDLAYH  H+ NM KEP++ RET SQ+KRRRMLQF
Sbjct: 14  WNEVTLNEEDLSYMLD-ETTPVKACGDLAYHVNHSDNMHKEPEEHRETSSQLKRRRMLQF 72

Query: 66  DTQVVDSSLCSDEMPSPFLKSN-----------ERGESVEEVLPEASQWTTEFSAGVSAS 114
           DTQ  DS LC +E+ S FL+SN           ER +S+EEVLP+AS W   FSA VSAS
Sbjct: 73  DTQAADSPLCHEEISSVFLQSNATVNVFVTYVQEREDSLEEVLPQASDWVPGFSADVSAS 132

Query: 115 SCDGTDQSLEGWISECLNDPEMNFSTDELLRDFSGASDIQIDISEFSNSPPAYDDANILQ 174
           S +  D S EGW+++C ND EM  S +++  +F GA D+QIDISEF N P   ++A+ +Q
Sbjct: 133 SYEALDHSSEGWLADCFNDTEMGLSPNDM--NFPGACDVQIDISEFCNGPLG-NEAHAVQ 189

Query: 175 QHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHS-PAS 233
           +  T+TP NV+F+G+KS IRTPTKLASSV YPFAFIKPCG HGD+TLKDINQ+I + P S
Sbjct: 190 KRITRTPRNVIFKGKKSFIRTPTKLASSVVYPFAFIKPCGFHGDVTLKDINQKIRTPPPS 249

Query: 234 TLRQNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 277
            L+QN EDP+AYP SAFSGKPVVGKTKIRTEGGKGSITIMRTKG
Sbjct: 250 KLKQNEEDPAAYPTSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 293

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069822|ref|XP_002303048.1| predicted protein [Populus trichocarpa] gi|222844774|gb|EEE82321.1| predicted protein [Populus trichocarpa]

 Score =  341 bits (874), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 178/285 (62%), Positives = 215/285 (75%), Gaps = 14/285 (4%)

Query: 1   MSGSQWNEVALNGEDLSYMLDDETTPVKACGDLAYHATHNG-------NMSKEPKDCRET 53
           +S   WNEV LNGEDLSYMLD ETTPVKAC DLAYH  H+G       NM+KEP++ RET
Sbjct: 2   VSQRLWNEVTLNGEDLSYMLD-ETTPVKACADLAYHVNHDGMVLWMSDNMNKEPEERRET 60

Query: 54  YSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSAGVSA 113
             Q KRRR LQFDT + DS  C +++ S FLKSNE  ES+EEV P+ASQW + +   +SA
Sbjct: 61  CFQFKRRR-LQFDTHLADSPFCDEDLTSVFLKSNETEESLEEVFPQASQWDSGYQ-DMSA 118

Query: 114 SSCDGTDQSLEGWISECLNDPEMNFSTDELLRDFSGASDIQIDISEFSNSPPAYDDANIL 173
           S  +G D S + WI++C ND  M+FS +++  +F GASDIQIDIS+F N PP ++ A+ +
Sbjct: 119 SCYNGLDPSSDPWIADCFNDSGMHFSPNDM--NFPGASDIQIDISDFCNDPPEFE-ASTV 175

Query: 174 QQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHS-PA 232
           Q+   +TP NVVF+G KS I+TPTKLA+SVAYPFAFIKPCGVHGD+TL +INQRI + P 
Sbjct: 176 QKCVPRTPRNVVFKGTKSFIQTPTKLATSVAYPFAFIKPCGVHGDVTLNEINQRIRTPPP 235

Query: 233 STLRQNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 277
           S  +Q  EDP  YP SAFSGKPVVGKTKIRTEGGKGSITIMRTKG
Sbjct: 236 SKSKQKDEDPVVYPMSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 280

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559041|ref|XP_003547810.1| PREDICTED: protein XRI1-like [Glycine max]

 Score =  312 bits (799), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 163/283 (57%), Positives = 204/283 (72%), Gaps = 10/283 (3%)

Query: 1   MSGSQWNEVALNGEDLSYMLDDETTPVKACGDLAYHATHNGNMSKEPKDCRETYSQIKRR 60
           +S   WN+V  N EDLSYMLDDETTPVKACGDLAY+  +  NM KE ++CRETYSQ KRR
Sbjct: 31  ISEELWNDVPQNEEDLSYMLDDETTPVKACGDLAYNVNNADNMQKELEECRETYSQAKRR 90

Query: 61  RMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWT---TEFSAGVSASSCD 117
           RMLQF++Q  D SL ++ M   +LK N + + V+E+ PE SQW    ++F+ G +AS+ D
Sbjct: 91  RMLQFNSQESDQSLSNEGMSLSYLK-NGKEDPVKEIFPEVSQWVSGASDFTLG-NASASD 148

Query: 118 GTD-QSLEGWISECLNDPEMNFSTDELLRDFSGASDIQIDISEFSNSPPAYDDANILQQH 176
             D +S E W+++  ND EM+ S +EL   FS A D+QID +E S   P+ +   + Q H
Sbjct: 149 YVDLESTETWLADYFNDAEMDISPEEL--KFSVADDVQIDGTEVSAIKPSREQNVVQQTH 206

Query: 177 CTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHS--PAST 234
             +T  N++F+GRKS I  PTKLASSVAYPFAFIKP G HGD+TLK+INQ I +  P  +
Sbjct: 207 IPRTTRNIIFKGRKSFIHMPTKLASSVAYPFAFIKPSGAHGDVTLKEINQHIQTPPPLKS 266

Query: 235 LRQNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 277
            + N +DPSAYPKSAFSGKPVVGKTKIRTEGGKGSITI RTKG
Sbjct: 267 KQSNDDDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITITRTKG 309

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453276|ref|XP_004144384.1| PREDICTED: protein XRI1-like [Cucumis sativus] gi|449529551|ref|XP_004171763.1| PREDICTED: protein XRI1-like [Cucumis sativus]

 Score =  303 bits (776), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 163/282 (57%), Positives = 205/282 (72%), Gaps = 10/282 (3%)

Query: 1   MSGSQWNEVALNGEDLSYMLDDETTPVKACGDLAYHATHNGNMSKEPKDCRETYSQIKRR 60
           +S   W+ V+ NG DLSY+ D ETTPVKACGDLAYH T + + +K+ ++ RET+SQ KRR
Sbjct: 28  ISECLWDGVSENG-DLSYVFD-ETTPVKACGDLAYHVTCSDDRNKKSEESRETHSQAKRR 85

Query: 61  RMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSA---GVSASSCD 117
           RMLQF  Q +++S+C +++ S FLKS+ +  S    L E S    E S     V  S  +
Sbjct: 86  RMLQFTAQDLETSICREDLSSRFLKSHNKVVSSPAALAEVSYGIPECSGLADNVLISCHE 145

Query: 118 GTDQSLEGWISECLNDPEMNFSTDELLRDFSGASDIQIDISEFSNSPPAYDDANILQQHC 177
             D S EGWI+ECLND +M+ S ++L   F+G SDIQID+SEF +  P +  +N++Q H 
Sbjct: 146 NLDHSPEGWIAECLNDADMHCSPEDL--SFAGTSDIQIDVSEFCDGAPEFK-SNVVQHHP 202

Query: 178 TKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHS-PASTLR 236
           T+ P N++F+GRKS IRTPTKLASSVAYPFAFIKPCG HGD+TLKDINQRI + P S L+
Sbjct: 203 TRAPPNIIFKGRKSYIRTPTKLASSVAYPFAFIKPCGFHGDVTLKDINQRIRTPPPSKLK 262

Query: 237 QNTEDPS-AYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 277
              EDPS +YP SAFSGKPVVGKTKI TEGGKGSITIMRT+G
Sbjct: 263 HQPEDPSESYPTSAFSGKPVVGKTKIHTEGGKGSITIMRTRG 304

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506666|ref|XP_003522097.1| PREDICTED: LOW QUALITY PROTEIN: protein XRI1-like [Glycine max]

 Score =  291 bits (744), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 159/281 (56%), Positives = 197/281 (70%), Gaps = 21/281 (7%)

Query: 1   MSGSQWNEVALNGEDLSYMLDDETTPVKACGDLAYHATHNGNMSKEPKDCRETYSQIKRR 60
           +S   WN+V  N EDLSYMLDDETTPVKACGDL            EP++CRETYSQ KRR
Sbjct: 64  ISEELWNDVPQNEEDLSYMLDDETTPVKACGDL------------EPEECRETYSQXKRR 111

Query: 61  RMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSAGVSASSCDGTD 120
           RMLQF++Q  D SL ++EM   +LK N + + V+E+ PE SQW +  S   SAS  D  D
Sbjct: 112 RMLQFNSQDSDQSLSNEEMSLSYLK-NGKEDPVKEIFPEVSQWVSGASGNASAS--DYVD 168

Query: 121 -QSLEGWISECLNDPEMNFSTDELLRDFSGASDIQIDI-SEFSNSPPAYDDANILQQHCT 178
            +S E W+++  ND  M+FS +EL  +FS A  +QID  +E S   P+++   + Q H  
Sbjct: 169 LESTETWLADYFNDAVMDFSPEEL--NFSVADGVQIDDGTEVSAITPSHEQNVVQQTHVP 226

Query: 179 KTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHSPASTLRQN 238
           +T  N++F+GRKS I  PTKLASSVAYPFAFIKP G HGD+TLK+INQRI +P+ +    
Sbjct: 227 RTTCNIIFKGRKSFIHMPTKLASSVAYPFAFIKPSGAHGDVTLKEINQRIQTPSPSKSNQ 286

Query: 239 T--EDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 277
           +  +DPSAYPKSAFSGKPVVGKTKIRTEGGKGSITI RTKG
Sbjct: 287 SIDDDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITITRTKG 327

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147771043|emb|CAN65243.1| hypothetical protein VITISV_010925 [Vitis vinifera]

 Score =  289 bits (740), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 162/297 (54%), Positives = 192/297 (64%), Gaps = 56/297 (18%)

Query: 1   MSGSQWNEVALNGEDLSYMLDDETTPVKACGDLAYHATHNG------------------N 42
           +S   W+ V  N EDLSYM D ETTPVKACGDLAYH T  G                  N
Sbjct: 60  ISQCLWDGVTQNEEDLSYMFD-ETTPVKACGDLAYHVTDGGILALHCLPJLQLKEWIPGN 118

Query: 43  MSKEPKDCRETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQ 102
           M+KE  +C+ET SQ                               ER   VEE  P+ASQ
Sbjct: 119 MNKE-TECKETCSQ-------------------------------ERESFVEETQPDASQ 146

Query: 103 WTTEFSAGVSASSCDGTDQSLEGWISECLNDPEMNFSTDELLRDFSGASDIQIDISEFSN 162
           W + F   +S S  +G D+S EGW++EC ND EM+FS D++  + S  SD+QID++EF N
Sbjct: 147 WVSGFPENMSVSGYEGLDKSSEGWLAECFNDAEMHFSPDDM--NLSEISDVQIDVTEFYN 204

Query: 163 SPPAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLK 222
            P  Y+ AN +Q+  T+TP NV+F+GRKS +RTPTKLASSVAYPFAFIKPCGVHGD+TLK
Sbjct: 205 IPTEYE-ANTVQERATRTPQNVIFKGRKSYMRTPTKLASSVAYPFAFIKPCGVHGDVTLK 263

Query: 223 DINQRIHS-PASTLRQNTEDPS-AYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 277
           DINQRI + P S  RQ+ EDPS +YP SAFSGKPVVGKTKIRTEGGKGSITIMRTKG
Sbjct: 264 DINQRIRTPPPSKSRQSNEDPSVSYPTSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 320

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808040|ref|NP_001242722.1| uncharacterized protein LOC100791247 [Glycine max] gi|255647285|gb|ACU24109.1| unknown [Glycine max]

 Score =  289 bits (740), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 158/274 (57%), Positives = 193/274 (70%), Gaps = 10/274 (3%)

Query: 6   WNEVALNGEDLSYMLDDETTPVKACGDLAYHATHNGNMSKEPKDCRETYSQIKRRRMLQF 65
           WN V  N EDLS + +DETTPVKACGD AY+  +N  + KE   C ++  QIKRRRMLQF
Sbjct: 33  WNGVPQN-EDLSNVFNDETTPVKACGDFAYN-VNNSELQKESDKCLKSSDQIKRRRMLQF 90

Query: 66  DTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSAGVSASSCDGTDQSLEG 125
           +TQ     L ++ M S +LK  E  ES E+V PE S W +  S   SAS+ +   +S EG
Sbjct: 91  NTQDGGHFLSNEHMSSAYLKGKE--ESNEDVFPELSHWVSGASGSASASNYEDL-ESAEG 147

Query: 126 WISECLNDPEMNFSTDELLRDFSGASDIQIDISEFSNSPPAYDDANILQQHCTKTPHNVV 185
           W+++C  D EM    D+L  +FSGA  +QID+++  N PPA +  N+LQ H T+TP N+V
Sbjct: 148 WLADCFKDAEMQLCPDDL--NFSGADAVQIDVADLCNFPPACE-QNVLQHHVTQTPKNIV 204

Query: 186 FRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHSPASTLR--QNTEDPS 243
           F+G KS I TPTKLA+SVAYPF FIKPCG HGD+TLK+INQRI SP   L+  Q+ EDPS
Sbjct: 205 FKGGKSFIETPTKLAASVAYPFTFIKPCGAHGDVTLKEINQRILSPPPPLKSQQSMEDPS 264

Query: 244 AYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 277
           AYPKSAFSGKPVVGKTKI  EGGKGSITIM TKG
Sbjct: 265 AYPKSAFSGKPVVGKTKIHIEGGKGSITIMGTKG 298

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527366|ref|XP_003532282.1| PREDICTED: protein XRI1-like [Glycine max]

 Score =  288 bits (738), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 152/277 (54%), Positives = 197/277 (71%), Gaps = 12/277 (4%)

Query: 6   WNEVALNGEDLSYMLDDETTPVKACGDLAYHATHNGNM--SKEPKDCRETYSQIKRRRML 63
           WN V+ N EDLS++ +DETTPVKACGD AY+  ++ +    KE   C ++  QIKRRRML
Sbjct: 33  WNGVSQN-EDLSFVFNDETTPVKACGDFAYNVNNSESNNVQKESDKCLKSSYQIKRRRML 91

Query: 64  QFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSAGVSASSCDGTDQSL 123
           QF++Q     L +++M S +LK  E  E  E+V PE SQW +      SAS+ +   +S 
Sbjct: 92  QFNSQDGGHLLSNEQMSSAYLKGKE--EPKEDVFPEFSQWVSGTPGSASASNYEDL-ESA 148

Query: 124 EGWISECLNDPEMNFSTDELLRDFSGASDIQIDISEFSNSPPAYDDANILQQHCTKTPHN 183
           EGW+++C  D EM    D+L  +FSGA ++Q+D+++  N PPA +  N++Q   T+TP N
Sbjct: 149 EGWLADCFKDAEMQLCPDDL--NFSGADEVQVDVADLGNFPPACEQ-NVVQHGFTQTPKN 205

Query: 184 VVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHSPASTLR---QNTE 240
           ++F+G KS I TPTKLA+SVAYPFAFIKPCG HGD+TLK+INQRI SP   L+   Q+ E
Sbjct: 206 IIFKGGKSFIETPTKLAASVAYPFAFIKPCGAHGDVTLKEINQRILSPPPPLKSQQQSME 265

Query: 241 DPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 277
           DPSAYPKSAFSGKPVVGKT+I  EGGKGSITIMRTKG
Sbjct: 266 DPSAYPKSAFSGKPVVGKTRIHIEGGKGSITIMRTKG 302

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792063|ref|XP_002863916.1| hypothetical protein ARALYDRAFT_494937 [Arabidopsis lyrata subsp. lyrata] gi|297309751|gb|EFH40175.1| hypothetical protein ARALYDRAFT_494937 [Arabidopsis lyrata subsp. lyrata]

 Score =  272 bits (695), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 148/272 (54%), Positives = 186/272 (68%), Gaps = 6/272 (2%)

Query: 6   WNEVALNGEDLSYMLDDETTPVKACGDLAYHATHNGNMSKEPKDCRETYSQIKRRRMLQF 65
             EV LN ED SYM DDETTPVKAC +L YH T   + +++ +   ET S +KRRRMLQF
Sbjct: 1   MTEVTLNQEDHSYMFDDETTPVKACSELGYHVTTE-DTNRKMEVHSETRSALKRRRMLQF 59

Query: 66  DTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSAGVSASSCDGTDQSLEG 125
           + Q  ++SL S E  S  LKS+ R E+ +E+LPE SQ    FS   SASS +G D   E 
Sbjct: 60  EDQP-ETSLFSSESFSAILKSSARDETFDELLPEGSQLIEGFSEDASASSFEGLDLYAEE 118

Query: 126 WISECLNDPEMNFSTDELLRDFSGASDIQIDISEFSNSPPAYDDANILQQHCTKTPHNVV 185
           W +ECLND E     D+L   F G+ D+Q+DISE+ N PP  +     Q+  T++  NV+
Sbjct: 119 WYAECLNDAETPMLPDDL--SF-GSPDVQVDISEYLNVPPETETREA-QRPVTRSSPNVI 174

Query: 186 FRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHSPASTLRQNTEDPSAY 245
           F+GRKS  R  +KL SS+ YPFAFIKPCGVHG +TLKDINQ+I +P +  +Q+ E+P+  
Sbjct: 175 FKGRKSFSRPVSKLPSSIIYPFAFIKPCGVHGGMTLKDINQKIRNPPAKPKQHIEEPAVI 234

Query: 246 PKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 277
             SAFSGKPVVGKTKIRTEGGKGSITIMRT+G
Sbjct: 235 QTSAFSGKPVVGKTKIRTEGGKGSITIMRTRG 266

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79532088|ref|NP_199683.2| protein XRI1 [Arabidopsis thaliana] gi|45773794|gb|AAS76701.1| At5g48720 [Arabidopsis thaliana] gi|58531328|gb|AAW78586.1| At5g48720 [Arabidopsis thaliana] gi|332008332|gb|AED95715.1| protein XRI1 [Arabidopsis thaliana]

 Score =  266 bits (681), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 144/270 (53%), Positives = 186/270 (68%), Gaps = 6/270 (2%)

Query: 8   EVALNGEDLSYMLDDETTPVKACGDLAYHATHNGNMSKEPKDCRETYSQIKRRRMLQFDT 67
           EV LN ED SYM DDE TPVKAC +L YH T   + +++ +   ET S +KRRRMLQF+ 
Sbjct: 3   EVTLNQEDHSYMFDDENTPVKACSELGYHVTTE-DTNRKMEVHSETRSALKRRRMLQFED 61

Query: 68  QVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSAGVSASSCDGTDQSLEGWI 127
           Q  ++SL S E  S  LKS+ R ++ +E+LPE SQ    FS   SASS +G D   E W 
Sbjct: 62  QP-ETSLFSSESFSAILKSSARDDTFDELLPEGSQLIEGFSEDASASSFEGLDLYAEEWY 120

Query: 128 SECLNDPEMNFSTDELLRDFSGASDIQIDISEFSNSPPAYDDANILQQHCTKTPHNVVFR 187
           ++CLND E     D+L  +F G+ D+Q+DISE+ N PP  +   + Q+  T++  NV+F+
Sbjct: 121 ADCLNDAETPMLPDDL--NF-GSPDVQVDISEYLNVPPETETREV-QRPVTRSSPNVIFK 176

Query: 188 GRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHSPASTLRQNTEDPSAYPK 247
           GRKS  R  +KL SS+ YPFAFIKPCGVHG +TLKDINQ+I +P +  + + E+P+    
Sbjct: 177 GRKSFSRPVSKLPSSIIYPFAFIKPCGVHGGMTLKDINQKIRNPPAKPKAHIEEPAVIQT 236

Query: 248 SAFSGKPVVGKTKIRTEGGKGSITIMRTKG 277
           SAFSGKPVVGKTKIRTEGGKGSITIMRT+G
Sbjct: 237 SAFSGKPVVGKTKIRTEGGKGSITIMRTRG 266

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
TAIR|locus:2156519	300	XRI1 "AT5G48720" [Arabidopsis	0.953	0.88	0.533	1.9e-67
TAIR|locus:2041110	213	AT2G01990 "AT2G01990" [Arabido	0.523	0.680	0.365	5.6e-13
TAIR|locus:2204538	226	AT1G14630 "AT1G14630" [Arabido	0.267	0.327	0.506	1.7e-08

TAIR|locus:2156519 XRI1 "AT5G48720" [Arabidopsis thaliana (taxid:3702)]

 Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
 Identities = 144/270 (53%), Positives = 186/270 (68%)

Query:     8 EVALNGEDLSYMLDDETTPVKACGDLAYHATHNGNMSKEPKDCRETYSQIKRRRMLQFDT 67
             EV LN ED SYM DDE TPVKAC +L YH T   + +++ +   ET S +KRRRMLQF+ 
Sbjct:    37 EVTLNQEDHSYMFDDENTPVKACSELGYHVTTE-DTNRKMEVHSETRSALKRRRMLQFED 95

Query:    68 QVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSAGVSASSCDGTDQSLEGWI 127
             Q  ++SL S E  S  LKS+ R ++ +E+LPE SQ    FS   SASS +G D   E W 
Sbjct:    96 QP-ETSLFSSESFSAILKSSARDDTFDELLPEGSQLIEGFSEDASASSFEGLDLYAEEWY 154

Query:   128 SECLNDPEMNFSTDELLRDFSGASDIQIDISEFSNSPPAYDDANILQQHCTKTPHNVVFR 187
             ++CLND E     D+L  +F G+ D+Q+DISE+ N PP  +   + Q+  T++  NV+F+
Sbjct:   155 ADCLNDAETPMLPDDL--NF-GSPDVQVDISEYLNVPPETETREV-QRPVTRSSPNVIFK 210

Query:   188 GRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHSPASTLRQNTEDPSAYPK 247
             GRKS  R  +KL SS+ YPFAFIKPCGVHG +TLKDINQ+I +P +  + + E+P+    
Sbjct:   211 GRKSFSRPVSKLPSSIIYPFAFIKPCGVHGGMTLKDINQKIRNPPAKPKAHIEEPAVIQT 270

Query:   248 SAFSGKPVVGKTKIRTEGGKGSITIMRTKG 277
             SAFSGKPVVGKTKIRTEGGKGSITIMRT+G
Sbjct:   271 SAFSGKPVVGKTKIRTEGGKGSITIMRTRG 300

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006281 "DNA repair" evidence=IMP

GO:0007140 "male meiosis" evidence=IMP

GO:0007143 "female meiosis" evidence=IMP

GO:0009555 "pollen development" evidence=IMP

GO:0010165 "response to X-ray" evidence=IEP

GO:0006302 "double-strand break repair" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0010332 "response to gamma radiation" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2041110 AT2G01990 "AT2G01990" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 64/175 (36%), Positives = 86/175 (49%)

Query:   120 DQSLEGW-ISE---CLND----PEMNFSTDELLRDFSGASDIQIDISEFSNSPP---AYD 168
             D S   W + E   CLN     P +N  T E +   SG S  Q  IS    SP    +YD
Sbjct:    52 DDSQNDWGLHESYSCLNSQFVTPHVN--TGERI---SGVSYCQETISNVYESPDTSVSYD 106

Query:   169 DANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRI 228
                + ++  T+   +      K LI   TKL     YPF  +KP G   D+TL DIN+RI
Sbjct:   107 KIYVREKSPTEPSSSNCGNKNKRLI---TKLV----YPFGLVKPGGRENDVTLNDINERI 159

Query:   229 -HSPASTLRQNTEDPSAYP-----KSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 277
               +P+  +R    D ++ P         SGK VV  TKI+T+G +G+ITI+RTKG
Sbjct:   160 LMAPSRPIRHPVGDFASRPCVSGRGPGLSGKAVVALTKIQTQG-RGTITIIRTKG 213

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2204538 AT1G14630 "AT1G14630" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 41/81 (50%), Positives = 49/81 (60%)

Query:   203 VAYPFAFIKPCGVHGDITLKDINQRIHSP-ASTLRQNTEDPSAYP-KSA----FSGKPVV 256
             V YPF  +KP G   DITL DIN+RI  P A  +R    D +  P  SA     SGK VV
Sbjct:   147 VVYPFGVVKPGGREEDITLNDINKRILMPSARPVRHPVGDFACRPCVSADGPGLSGKAVV 206

Query:   257 GKTKIRTEGGKGSITIMRTKG 277
               TKI+T G +G+ITI+RTKG
Sbjct:   207 AFTKIQTLG-RGTITIIRTKG 226


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.129   0.380    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      277       277   0.00080  115 3  11 23  0.42    34
                                                     33  0.41    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  218 KB (2120 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  26.16u 0.08s 26.24t   Elapsed:  00:00:03
  Total cpu time:  26.16u 0.09s 26.25t   Elapsed:  00:00:03
  Start:  Tue May 21 00:36:01 2013   End:  Tue May 21 00:36:04 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00