Citrus Sinensis ID: 023789

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------
Protein Sequence
MENKPYAPEQWRAWLTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSFQPWKENYLLGPSISTLRDLGGLDRNLIVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLHHKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFILFLRPQYGYVSEKYIAAGYDAKHRQPKYMHYQQLCWIIALILLVLGYIT
Secondary Structure (PSIPRED)
ccccccccccccEEHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHcccccccccccccccccHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHcccccccccccccccccHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHEHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
menkpyapeqwrawlTPVIFVVCIIMFVYTMhvnncpaktadshqCVLRDILgrysfqpwkenyllgpsistlrdlggldrnliVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLHHKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLafgfipgvdgvdnlahiGGFASGVLLGFILFLrpqygyvsekyiaagydakhrqpkymhYQQLCWIIALILLVLGYIT
Flexible Loop (DISEMBL)
menkpyapeqwrawlTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSFQPWKENYLLGPSISTLRDLGGLDRNLIVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLHHKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFILFLRPQYGYVSEKYIAAGYDAKHRQPKYMHYQQLCWIIALILLVLGYIT
Low Complexity Region (SEG)
MENKPYAPEQWRAWLTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSFQPWKENYLLGPSISTLRDLGGLDRNLIVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPlyllsgfggsllsclHHKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFILFLRPQYGYVSEKYIAAGYDAKHRQPKYMHYQQLCWIIALILLVLGYIT
Disordered region (IsUnstruct)
*********QWRAWLTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSFQPWKENYLLGPSISTLRDLGGLDRNLIVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLHHKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFILFLRPQYGYVSEKYIAAGYDAKHRQPKYMHYQQLCWIIALILLVLGYI*
Disordered Region (DISOPRED)
******A*EQWRAWLTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSFQPWKENYLLGPSISTLRDLGGLDRNLIVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLHHKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFILFLRPQYGYVSEKYIAAGYDAKHRQPKYMHYQQLCWIIALILLVLGYIT
Disordered Region (DISEMBL)
MENKPYAPEQWRAWLTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSFQPWKENYLLGPSISTLRDLGGLDRNLIVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLHHKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFILFLRPQYGYVSEKYIAAGYDAKHRQPKYMHYQQLCWIIALILLVLGYIT
Disordered Region (DISPRO)
**N*PYAPEQWRAWLTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSFQPWKENYLLGPSISTLRDLGGLDRNLIVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLHHKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFILFLRPQYGYVSEKYIAAGYDAKHRQPKYMHYQQLCWIIALILLVLGYIT
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
ooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MENKPYAPEQWRAWLTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSFQPWKENYLLGPSISTLRDLGGLDRNLIVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLHHKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFILFLRPQYGYVSEKYIAAGYDAKHRQPKYMHYQQLCWIIALILLVLGYIT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	277	2.2.26 [Sep-21-2011]
Q6PIX5	856	Inactive rhomboid protein	yes	no	0.516	0.167	0.389	5e-20
Q499S9	856	Inactive rhomboid protein	yes	no	0.516	0.167	0.389	6e-20
A9L8T6	855	Inactive rhomboid protein	N/A	no	0.516	0.167	0.382	2e-19
Q96CC6	855	Inactive rhomboid protein	yes	no	0.516	0.167	0.382	2e-19
B1MT31	855	Inactive rhomboid protein	N/A	no	0.516	0.167	0.382	2e-19
B0VX73	855	Inactive rhomboid protein	yes	no	0.516	0.167	0.382	2e-19
A7YWH9	856	Inactive rhomboid protein	yes	no	0.577	0.186	0.347	3e-19
Q6GMF8	857	Inactive rhomboid protein	yes	no	0.588	0.190	0.342	2e-18
Q695T8	641	Rhomboid-like protease 4	N/A	no	0.541	0.234	0.312	8e-17
Q6GV23	841	Rhomboid-like protease 5	N/A	no	0.519	0.171	0.351	4e-16

>sp|Q6PIX5|RHDF1_MOUSE Inactive rhomboid protein 1 OS=Mus musculus GN=Rhbdf1 PE=1 SV=2

 Score = 98.6 bits (244), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 58/149 (38%), Positives = 83/149 (55%), Gaps = 6/149 (4%)

Query: 88  NQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLH 147
           +Q YRL  S++LHAGI+H +V++   M V   LE+  G+ RIA +YLLSG  G+L S + 
Sbjct: 652 DQFYRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLSGITGNLASAIF 711

Query: 148 HKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFIPGV 207
              + E   VG +G+ FG+L  +  EL  +W I A    +   L +V+    AFG +P  
Sbjct: 712 LPYRAE---VGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFAFGLLP-- 766

Query: 208 DGVDNLAHIGGFASGVLLGFILFLRPQYG 236
             +DN AHI GF SG+ L F       +G
Sbjct: 767 -WIDNFAHISGFVSGLFLSFAFLPYISFG 794

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.
Mus musculus (taxid: 10090)

>sp|Q499S9|RHDF1_RAT Inactive rhomboid protein 1 OS=Rattus norvegicus GN=Rhbdf1 PE=2 SV=1

 Score = 98.2 bits (243), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 58/149 (38%), Positives = 83/149 (55%), Gaps = 6/149 (4%)

Query: 88  NQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLH 147
           +Q YRL  S++LHAGI+H +V++   M V   LE+  G+ RIA +YLLSG  G+L S + 
Sbjct: 652 DQFYRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIF 711

Query: 148 HKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFIPGV 207
              + E   VG +G+ FG+L  +  EL  +W I A    +   L +V+    AFG +P  
Sbjct: 712 LPYRAE---VGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFAFGLLP-- 766

Query: 208 DGVDNLAHIGGFASGVLLGFILFLRPQYG 236
             +DN AHI GF SG+ L F       +G
Sbjct: 767 -WIDNFAHISGFVSGLFLSFAFLPYISFG 794

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Rattus norvegicus (taxid: 10116)

>sp|A9L8T6|RHDF1_PAPAN Inactive rhomboid protein 1 OS=Papio anubis GN=RHBDF1 PE=3 SV=1

 Score = 96.3 bits (238), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 57/149 (38%), Positives = 82/149 (55%), Gaps = 6/149 (4%)

Query: 88  NQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLH 147
           +Q YRL  S++LHAGI+H +V++   M V   LE+  G+ RIA +YLLSG  G+L S + 
Sbjct: 651 DQFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIF 710

Query: 148 HKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFIPGV 207
              + E   VG +G+ FG+L  +  EL  +W I A    +   L +V+     FG +P  
Sbjct: 711 LPYRAE---VGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLP-- 765

Query: 208 DGVDNLAHIGGFASGVLLGFILFLRPQYG 236
             +DN AHI GF SG+ L F       +G
Sbjct: 766 -WIDNFAHISGFISGLFLSFAFLPYISFG 793

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Papio anubis (taxid: 9555)

>sp|Q96CC6|RHDF1_HUMAN Inactive rhomboid protein 1 OS=Homo sapiens GN=RHBDF1 PE=1 SV=2

 Score = 96.3 bits (238), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 57/149 (38%), Positives = 82/149 (55%), Gaps = 6/149 (4%)

Query: 88  NQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLH 147
           +Q YRL  S++LHAGI+H +V++   M V   LE+  G+ RIA +YLLSG  G+L S + 
Sbjct: 651 DQFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIF 710

Query: 148 HKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFIPGV 207
              + E   VG +G+ FG+L  +  EL  +W I A    +   L +V+     FG +P  
Sbjct: 711 LPYRAE---VGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLP-- 765

Query: 208 DGVDNLAHIGGFASGVLLGFILFLRPQYG 236
             +DN AHI GF SG+ L F       +G
Sbjct: 766 -WIDNFAHISGFISGLFLSFAFLPYISFG 793

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Homo sapiens (taxid: 9606)

>sp|B1MT31|RHDF1_CALMO Inactive rhomboid protein 1 OS=Callicebus moloch GN=RHBDF1 PE=3 SV=1

 Score = 96.3 bits (238), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 57/149 (38%), Positives = 82/149 (55%), Gaps = 6/149 (4%)

Query: 88  NQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLH 147
           +Q YRL  S++LHAGI+H +V++   M V   LE+  G+ RIA +YLLSG  G+L S + 
Sbjct: 651 DQFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIF 710

Query: 148 HKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFIPGV 207
              + E   VG +G+ FG+L  +  EL  +W I A    +   L +V+     FG +P  
Sbjct: 711 LPYRAE---VGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLP-- 765

Query: 208 DGVDNLAHIGGFASGVLLGFILFLRPQYG 236
             +DN AHI GF SG+ L F       +G
Sbjct: 766 -WIDNFAHISGFISGLFLSFAFLPYISFG 793

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Callicebus moloch (taxid: 9523)

>sp|B0VX73|RHDF1_CALJA Inactive rhomboid protein 1 OS=Callithrix jacchus GN=RHBDF1 PE=3 SV=1

 Score = 96.3 bits (238), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 57/149 (38%), Positives = 82/149 (55%), Gaps = 6/149 (4%)

Query: 88  NQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLH 147
           +Q YRL  S++LHAGI+H +V++   M V   LE+  G+ RIA +YLLSG  G+L S + 
Sbjct: 651 DQFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIF 710

Query: 148 HKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFIPGV 207
              + E   VG +G+ FG+L  +  EL  +W I A    +   L +V+     FG +P  
Sbjct: 711 LPYRAE---VGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLP-- 765

Query: 208 DGVDNLAHIGGFASGVLLGFILFLRPQYG 236
             +DN AHI GF SG+ L F       +G
Sbjct: 766 -WIDNFAHISGFISGLFLSFAFLPYISFG 793

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Callithrix jacchus (taxid: 9483)

>sp|A7YWH9|RHDF1_BOVIN Inactive rhomboid protein 1 OS=Bos taurus GN=RHBDF1 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 64/184 (34%), Positives = 94/184 (51%), Gaps = 24/184 (13%)

Query: 88  NQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLH 147
           +Q YRL  S++LHAG++H +V++   M V   LE+  G+ RIA +YLLSG  G+L S + 
Sbjct: 652 DQFYRLWLSLFLHAGVLHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIF 711

Query: 148 HKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFIPGV 207
              + E   VG +G+ FG+L  +  EL  +W I A    +   L +V+     FG +P  
Sbjct: 712 LPYRAE---VGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLP-- 766

Query: 208 DGVDNLAHIGGFASGVLLGFILFLRPQYGYVSEKYIAAGYDAKHRQPKYMHYQQLCWIIA 267
             +DN AHI GF SG+ L F              YI+ G        K+  Y++ C II 
Sbjct: 767 -WIDNFAHISGFISGLFLSFAFL----------PYISFG--------KFDLYRKRCQIIV 807

Query: 268 LILL 271
             L+
Sbjct: 808 FQLV 811

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Bos taurus (taxid: 9913)

>sp|Q6GMF8|RHDF1_DANRE Inactive rhomboid protein 1 OS=Danio rerio GN=rhbdf1 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/187 (34%), Positives = 97/187 (51%), Gaps = 24/187 (12%)

Query: 88  NQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLH 147
           +Q YRL  S++LHAGI+H +V++   M +   LE+  G+ RI+ +Y+LSG  G+L S + 
Sbjct: 653 DQFYRLWLSLFLHAGILHCLVSVCFQMTILRDLEKLAGWLRISIIYILSGITGNLASAIF 712

Query: 148 HKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFIPGV 207
              + E   VG +G+ FG+L  +  ELI +W I A    + + L  V+    AFG +P  
Sbjct: 713 LPYRAE---VGPAGSQFGILACLFVELIQSWQILAQPWRAFTKLLCVVLFLFAFGLLP-- 767

Query: 208 DGVDNLAHIGGFASGVLLGFILFLRPQYGYVSEKYIAAGYDAKHRQPKYMHYQQLCWIIA 267
             +DN AHI GF SG  L F              YI+ G        +   Y++ C II 
Sbjct: 768 -WIDNFAHISGFISGFFLSFAFL----------PYISFG--------RLDMYRKRCQIII 808

Query: 268 LILLVLG 274
            +++ LG
Sbjct: 809 FLVVFLG 815

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Danio rerio (taxid: 7955)

>sp|Q695T8|RHBL4_TOXGO Rhomboid-like protease 4 OS=Toxoplasma gondii GN=ROM4 PE=2 SV=1

 Score = 87.8 bits (216), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 91/163 (55%), Gaps = 13/163 (7%)

Query: 68  PSISTLRDLGGLDRNLIVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFA 127
           P+   LR LGGL+ N I   ++ +RL +SM++H G +H+++N++  + + + +E ++GF 
Sbjct: 320 PNARVLRHLGGLETNYIREYSETFRLFTSMYMHGGWLHILINLSCQIQILWIIEPDWGFL 379

Query: 128 RIAPLYLLSGFGGSLLSCLHHKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTS 187
           R   L+ L G  G+LLS +        ++VG+SG+++ LLG ++   +  W        S
Sbjct: 380 RTTLLFFLGGISGNLLSAVADPCS---ITVGSSGSMYALLGALIPYCVEYW-------KS 429

Query: 188 LSVLGSVIALNLA--FGFIPGVDG-VDNLAHIGGFASGVLLGF 227
           +   G ++   +    G + G+ G  DN AH+GG   G+L GF
Sbjct: 430 IPRPGCILVFMIVVIIGILTGMAGFTDNYAHMGGALGGILWGF 472

Putative serine protease involved in intramembrane proteolysis and the subsequent release of polypeptides from their membrane anchors.

Toxoplasma gondii (taxid: 5811)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|Q6GV23|RHBL5_TOXGO Rhomboid-like protease 5 OS=Toxoplasma gondii GN=ROM5 PE=1 SV=1

 Score = 85.5 bits (210), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 52/148 (35%), Positives = 81/148 (54%), Gaps = 4/148 (2%)

Query: 68  PSISTLRDLGGLDRNLIVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFA 127
           P+      LG LD N +    + +R++  M+LH G +HL++N++      + LE  +GF 
Sbjct: 442 PNPRVFSSLGALDTNKVRNYGEMFRVVWGMFLHGGWMHLLLNVSCQAQTLWILEPAWGFL 501

Query: 128 RIAPLYLLSGFGGSLLSCLHHKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTS 187
           R   L+++ G  GSLLS + +      V+VG+SGA +GLLG ++   I  W   A+    
Sbjct: 502 RTLSLWIVGGVSGSLLSAVANPCT---VTVGSSGAFYGLLGALVPFSIEYWDHIASPAWF 558

Query: 188 LSVLGSVIALNLAFGFIPGVDGVDNLAH 215
           L  + SV+ +   FG + GV GVDN AH
Sbjct: 559 LFCV-SVLVMVAQFGNMVGVQGVDNNAH 585

Serine protease involved in intramembrane proteolysis. Cleaves microneme adhesins, such as MIC2. This step is essential for efficient invasion of host cells. Catalyzes intramembrane proteolysis of AMA1.

Toxoplasma gondii (taxid: 5811)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
297847644	309	rhomboid family protein [Arabidopsis lyr	0.960	0.860	0.569	7e-81
297743435	289	unnamed protein product [Vitis vinifera]	0.935	0.896	0.575	2e-80
15219034	309	RHOMBOID-like protein 5 [Arabidopsis tha	0.960	0.860	0.565	5e-80
356557245	324	PREDICTED: rhomboid-related protein 3-li	0.949	0.811	0.548	1e-77
317106731	311	JHL06P13.7 [Jatropha curcas]	0.942	0.839	0.552	5e-77
124359588	324	Protein secE/sec61-gamma protein; Rhombo	0.942	0.805	0.543	1e-74
357455203	345	hypothetical protein MTR_2g103600 [Medic	0.942	0.756	0.508	6e-73
255553147	303	KOM, putative [Ricinus communis] gi|2235	0.938	0.858	0.600	1e-72
222616447	864	hypothetical protein OsJ_34868 [Oryza sa	0.956	0.306	0.465	8e-71
42569431	389	protein RHOMBOID-like 1 [Arabidopsis tha	0.945	0.673	0.514	2e-70

>gi|297847644|ref|XP_002891703.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata] gi|297337545|gb|EFH67962.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  306 bits (784), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 156/274 (56%), Positives = 194/274 (70%), Gaps = 8/274 (2%)

Query: 4   KPYAPEQWRAWLTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSFQPWKEN 63
           +P  P  W AWL P+I     + F  TM+VN+CPA+   S +C+L D+LGR SFQP KEN
Sbjct: 24  RPPIPVPWVAWLVPLILAANFVTFATTMYVNDCPAR---SDECLLFDVLGRLSFQPIKEN 80

Query: 64  YLLGPSISTLRDLGGLDRNLIVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQE 123
            LLGPSI TLR LG L+R L V + +++RL+S +WLH G +HL+ NM SLM +  RLEQE
Sbjct: 81  MLLGPSIPTLRKLGALERRL-VEEGERWRLISCIWLHGGFLHLMANMISLMCIGMRLEQE 139

Query: 124 FGFARIAPLYLLSGFGGSLLSCLHHKGKKEIVSVGASGALFGLLGTMLSELIANWTIYAN 183
           FGF RI  LY++SG GGSL+SCL    + E VSVGASGALFGLLG MLSELI NWTIY N
Sbjct: 140 FGFMRIGALYVISGLGGSLMSCL-TDSQGERVSVGASGALFGLLGAMLSELITNWTIYEN 198

Query: 184 KCTSLSVLGSVIALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFILFLRPQYGYVSEKYI 243
           KCT+L  L  +I LNL+ GF+P    VDN AH GGF +G  LGF+L LRPQYGYVS KYI
Sbjct: 199 KCTALMTLVLIIVLNLSVGFLP---RVDNSAHFGGFLAGFFLGFVLLLRPQYGYVSPKYI 255

Query: 244 AAGYDAKHRQPKYMHYQQLCWIIALILLVLGYIT 277
             GYD KH++ K+  YQ +    +L +L++G+I 
Sbjct: 256 PPGYDMKHKKSKHKCYQHILMYTSLAVLLVGFIA 289

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743435|emb|CBI36302.3| unnamed protein product [Vitis vinifera]

 Score =  305 bits (780), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 153/266 (57%), Positives = 191/266 (71%), Gaps = 7/266 (2%)

Query: 9   EQWRAWLTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSFQPWKENYLLGP 68
           + W  WL PV F+  +  FVY+M+VNNCP KT  + +CV    LGR+SFQP  EN L GP
Sbjct: 31  KSWFPWLVPVFFMANVATFVYSMYVNNCPEKTG-ADRCVFNSYLGRFSFQPLSENPLFGP 89

Query: 69  SISTLRDLGGLDRNLIVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFAR 128
           S +TL  LG L++ L+V++ +++RL+S +WLHAG IHL+ NM SL+ +  +LEQEFGF R
Sbjct: 90  SPTTLEKLGALEKKLVVQEGEEWRLVSCIWLHAGAIHLIANMLSLLFIGVKLEQEFGFLR 149

Query: 129 IAPLYLLSGFGGSLLSCLHHKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSL 188
           I  LY++SGFGGSLLS LH    ++ +SVGASGALFGLLG MLSEL  NWTIYANKC +L
Sbjct: 150 IGLLYVISGFGGSLLSALH---LQKSISVGASGALFGLLGAMLSELFMNWTIYANKCAAL 206

Query: 189 SVLGSVIALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFILFLRPQYGYVSEKYIAAGYD 248
             L  V+ LNLA GF+P    VD+ AHIGGF SG LLGFIL +RPQYGYVS KYI  GYD
Sbjct: 207 MTLMFVVVLNLAVGFLP---HVDSSAHIGGFLSGFLLGFILLVRPQYGYVSRKYIPPGYD 263

Query: 249 AKHRQPKYMHYQQLCWIIALILLVLG 274
            K  + K+  YQ L W+ AL+ L+ G
Sbjct: 264 GKRVKSKHKWYQYLLWVAALVALIFG 289

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219034|ref|NP_175667.1| RHOMBOID-like protein 5 [Arabidopsis thaliana] gi|5903047|gb|AAD55606.1|AC008016_16 F6D8.20 [Arabidopsis thaliana] gi|332194705|gb|AEE32826.1| RHOMBOID-like protein 5 [Arabidopsis thaliana]

 Score =  303 bits (776), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 155/274 (56%), Positives = 193/274 (70%), Gaps = 8/274 (2%)

Query: 4   KPYAPEQWRAWLTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSFQPWKEN 63
           +P  P  W AWL P+I     + F  TM+VN+CPA+   S +C+L D+LGR SFQP KEN
Sbjct: 24  RPPIPVPWVAWLVPLILAANFVTFATTMYVNDCPAR---SDECLLFDVLGRLSFQPIKEN 80

Query: 64  YLLGPSISTLRDLGGLDRNLIVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQE 123
            LLGPSI TLR LG L+R L V + +++RL+S +WLH G +HL+ NM SLM +  RLEQE
Sbjct: 81  MLLGPSIPTLRKLGALERRL-VEEGERWRLISCIWLHGGFLHLMANMISLMCIGMRLEQE 139

Query: 124 FGFARIAPLYLLSGFGGSLLSCLHHKGKKEIVSVGASGALFGLLGTMLSELIANWTIYAN 183
           FGF RI  LY++SG GGSL+SCL    + E VSVGASGALFGLLG MLSELI NWTIY N
Sbjct: 140 FGFMRIGALYVISGLGGSLVSCL-TDSQGERVSVGASGALFGLLGAMLSELITNWTIYEN 198

Query: 184 KCTSLSVLGSVIALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFILFLRPQYGYVSEKYI 243
           KCT+L  L  +I LNL+ GF+P    VDN AH GGF +G  LGF+L LRPQYGYV+ KYI
Sbjct: 199 KCTALMTLILIIVLNLSVGFLP---RVDNSAHFGGFLAGFFLGFVLLLRPQYGYVNPKYI 255

Query: 244 AAGYDAKHRQPKYMHYQQLCWIIALILLVLGYIT 277
             GYD KH++ K+  YQ +    +L +L+ G+I 
Sbjct: 256 PPGYDMKHKKSKHKCYQHIFRFTSLAILLAGFIA 289

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557245|ref|XP_003546928.1| PREDICTED: rhomboid-related protein 3-like [Glycine max]

 Score =  295 bits (756), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 152/277 (54%), Positives = 196/277 (70%), Gaps = 14/277 (5%)

Query: 8   PEQWRAWLTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSFQPWKENYLLG 67
           P  W  WL P+IF+  I MFVYTM+ N+CPA   D   C+    LGR+SFQP++EN LLG
Sbjct: 29  PSMWFPWLVPLIFLATIAMFVYTMYENDCPAYL-DEEVCLFSQYLGRFSFQPFRENPLLG 87

Query: 68  PSISTLRDLGGLDRNLIVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFA 127
           P+I TLR LG L++ L+V +N+ +R  S M+LHAG++HL+ NM SL+ +  RLE+EFGF 
Sbjct: 88  PAIRTLRLLGALEKELVVDQNEVWRFFSCMFLHAGVVHLLANMFSLLFIGVRLEKEFGFL 147

Query: 128 RIAPLYLLSGFGGSLLSCLHHK-GKKEIVSVGASGALFGLLGTMLSELIANWTIYANK-- 184
           +I  LY+LSGFGGS+LS LH K  +   VSVGASGALFGLLG MLSEL+ NW+IYANK  
Sbjct: 148 KIGLLYVLSGFGGSVLSVLHLKESEANTVSVGASGALFGLLGAMLSELLTNWSIYANKVL 207

Query: 185 ------CTSLSVLGSVIALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFILFLRPQYGYV 238
                 C +L+ L  ++ LNLA GF+P    VDN AH+GGF +G  LGF+L +RPQYGYV
Sbjct: 208 YPCLLQCAALTSLLIIVGLNLAVGFLP---HVDNSAHVGGFLAGYFLGFVLLMRPQYGYV 264

Query: 239 SEKYIAAGYDAKHRQPKYMHYQQLCWIIALILLVLGY 275
           + KYI  GYD K R+ KY  YQ    I+++I+L+LGY
Sbjct: 265 NRKYIPPGYDVK-RKSKYKWYQYFFLIMSVIILLLGY 300

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106731|dbj|BAJ53227.1| JHL06P13.7 [Jatropha curcas]

 Score =  293 bits (750), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 148/268 (55%), Positives = 189/268 (70%), Gaps = 7/268 (2%)

Query: 9   EQWRAWLTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSFQPWKENYLLGP 68
           EQW  WL P+IF   + MF+YTM+ N+CP  T  + +C+  + LGRYSFQP+KEN +LGP
Sbjct: 31  EQWTPWLVPLIFAANVTMFIYTMYDNDCPTYTG-TDKCLFYEYLGRYSFQPFKENAVLGP 89

Query: 69  SISTLRDLGGLDRNLIVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFAR 128
           S+ TL  LG LD   + R  + +R  S +WLHAG++HL+ NM SL+ +   LEQEFGF R
Sbjct: 90  SVITLELLGALDPLRVERNGEAWRFFSCIWLHAGVLHLLTNMISLLFIGIPLEQEFGFLR 149

Query: 129 IAPLYLLSGFGGSLLSCLHHKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSL 188
           I  LY++SGFGGSL+S L  +     +SVGASGALFGLLG+MLSEL  NWT Y NKC ++
Sbjct: 150 IGLLYVMSGFGGSLMSALSPEPN---ISVGASGALFGLLGSMLSELFLNWTTYVNKCKAV 206

Query: 189 SVLGSVIALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFILFLRPQYGYVSEKYIAAGYD 248
           + L  +I LNL+FG IP    VDN AHIGGF SG LLGFIL +RPQYGYVS +YI AGYD
Sbjct: 207 TSLLLIIGLNLSFGLIP---HVDNSAHIGGFLSGFLLGFILLMRPQYGYVSRRYIPAGYD 263

Query: 249 AKHRQPKYMHYQQLCWIIALILLVLGYI 276
              ++PK+  YQ L +IIA + L+  Y+
Sbjct: 264 MIKKKPKHKCYQYLLFIIASVALIFWYL 291

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|124359588|gb|ABD28718.2| Protein secE/sec61-gamma protein; Rhomboid-like protein [Medicago truncatula]

 Score =  285 bits (730), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 150/276 (54%), Positives = 193/276 (69%), Gaps = 15/276 (5%)

Query: 10  QWRAWLTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSFQPWKENYLLGPS 69
           QW +WL P+ F+  I MFVY+M++N+CP    +   C+    LG++SFQP+ EN LLGPS
Sbjct: 30  QWFSWLVPLFFLANIAMFVYSMYINDCPGYL-NEDDCLWYQYLGKFSFQPFNENPLLGPS 88

Query: 70  ISTLRDLGGLDRNLIVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARI 129
           + TLR LG L+R+L+V +N+ +R ++ M+LHAG+IHL+ NM SL+ +  RLE EFGF +I
Sbjct: 89  VRTLRVLGALERDLVVGENEVWRFITCMFLHAGVIHLLANMFSLLFIGVRLENEFGFLKI 148

Query: 130 APLYLLSGFGGSLLSCLHHKGKK--EIVSVGASGALFGLLGTMLSELIANWTIYANK--- 184
             LYLLSGFGGSLLS LH    K    VSVGASGALFGLLG MLSEL+ NWTIY NK   
Sbjct: 149 GVLYLLSGFGGSLLSILHMGDVKAPNTVSVGASGALFGLLGAMLSELLTNWTIYLNKGEK 208

Query: 185 -----CTSLSVLGSVIALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFILFLRPQYGYVS 239
                  +L+ L  +I LNLA GFIP    VDN AHIGGF SG  LGF++ +RPQ+GYV+
Sbjct: 209 PLTVQFKALTSLLLIIGLNLAVGFIP---HVDNSAHIGGFLSGFFLGFVILMRPQFGYVN 265

Query: 240 EKYIAAGYDAKHRQPKYMHYQQLCWIIALILLVLGY 275
            KYI  GYDAK R+ KY  YQ    ++++I L++GY
Sbjct: 266 NKYIPPGYDAK-RKSKYKGYQYFFLVLSVITLLIGY 300

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455203|ref|XP_003597882.1| hypothetical protein MTR_2g103600 [Medicago truncatula] gi|355486930|gb|AES68133.1| hypothetical protein MTR_2g103600 [Medicago truncatula]

 Score =  280 bits (715), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 151/297 (50%), Positives = 194/297 (65%), Gaps = 36/297 (12%)

Query: 10  QWRAWLTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSFQPWKENYLLGPS 69
           QW +WL P+ F+  I MFVY+M++N+CP    +   C+    LG++SFQP+ EN LLGPS
Sbjct: 30  QWFSWLVPLFFLANIAMFVYSMYINDCPGYL-NEDDCLWYQYLGKFSFQPFNENPLLGPS 88

Query: 70  ISTLRDLGGLDRNLIVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARI 129
           + TLR LG L+R+L+V +N+ +R ++ M+LHAG+IHL+ NM SL+ +  RLE EFGF +I
Sbjct: 89  VRTLRVLGALERDLVVGENEVWRFITCMFLHAGVIHLLANMFSLLFIGVRLENEFGFLKI 148

Query: 130 APLYLLSGFGGSLLSCLHHKGKK--EIVSVGASGALFGLLGTMLSELIANWTIYANK--- 184
             LYLLSGFGGSLLS LH    K    VSVGASGALFGLLG MLSEL+ NWTIY NK   
Sbjct: 149 GVLYLLSGFGGSLLSILHMGDVKAPNTVSVGASGALFGLLGAMLSELLTNWTIYLNKVLY 208

Query: 185 --------------------------CTSLSVLGSVIALNLAFGFIPGVDGVDNLAHIGG 218
                                     C +L+ L  +I LNLA GFIP    VDN AHIGG
Sbjct: 209 NDIFCCLERKREKIHGVGVCAKGQCSCAALTSLLLIIGLNLAVGFIP---HVDNSAHIGG 265

Query: 219 FASGVLLGFILFLRPQYGYVSEKYIAAGYDAKHRQPKYMHYQQLCWIIALILLVLGY 275
           F SG  LGF++ +RPQ+GYV+ KYI  GYDAK R+ KY  YQ    ++++I L++GY
Sbjct: 266 FLSGFFLGFVILMRPQFGYVNNKYIPPGYDAK-RKSKYKGYQYFFLVLSVITLLIGY 321

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553147|ref|XP_002517616.1| KOM, putative [Ricinus communis] gi|223543248|gb|EEF44780.1| KOM, putative [Ricinus communis]

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 161/268 (60%), Positives = 203/268 (75%), Gaps = 8/268 (2%)

Query: 9   EQWRAWLTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSFQPWKENYLLGP 68
           E+WR+WL PVIF V I +FVYTM+VN+CPAKT  + +C+L D+LGR+SFQP +EN +LGP
Sbjct: 32  EKWRSWLVPVIFSVNITIFVYTMYVNDCPAKTG-ADKCLLYDLLGRFSFQPLQENAVLGP 90

Query: 69  SISTLRDLGGLDRNLIVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFAR 128
           S+ TL  LG LD   IV+  + +R  S +WLHAG++HL  NM SL+ +  RLE+EFGF R
Sbjct: 91  SVITLERLGALDPMAIVKNGEAWRFFSCIWLHAGVVHLFTNMISLLFIGIRLEEEFGFLR 150

Query: 129 IAPLYLLSGFGGSLLSCLHHKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSL 188
           I  LY+LSGFGGSL+S L    +K  +SVGASGAL GLLG+MLSEL+ NWTIYANKC+++
Sbjct: 151 IGLLYVLSGFGGSLMSSLR---RKPSISVGASGALLGLLGSMLSELLMNWTIYANKCSAI 207

Query: 189 SVLGSVIALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFILFLRPQYGYVSEKYIAAGYD 248
           S L  +IALNLAFG IP    VDN AHIGGF SG LLGFIL +RPQYGYVS +YI  GY+
Sbjct: 208 STLLLIIALNLAFGLIP---HVDNSAHIGGFLSGFLLGFILLMRPQYGYVSSRYIPVGYN 264

Query: 249 AKHRQPKYMHYQQLCWIIALILLVLGYI 276
            K ++ K+  YQ L  I AL++L++GYI
Sbjct: 265 IK-KKSKHKCYQYLLLITALVVLIVGYI 291

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222616447|gb|EEE52579.1| hypothetical protein OsJ_34868 [Oryza sativa Japonica Group]

 Score =  273 bits (697), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 128/275 (46%), Positives = 188/275 (68%), Gaps = 10/275 (3%)

Query: 1   MENKPYAPEQWRAWLTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSFQPW 60
           +  +PY   +W  W+   I + C+++F+ +M+VN+CP +  +S  C     LGR++FQP 
Sbjct: 29  LRARPYY-RRWTPWIVAAIALSCVVVFLVSMYVNDCPRR--NSGDCA-AGFLGRFAFQPL 84

Query: 61  KENYLLGPSISTLRDLGGLDRNLIVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRL 120
           KEN LLGPS +TL  +G LD   +V  +Q +RL++ +WLHAG++HL++NM  L+ +  RL
Sbjct: 85  KENPLLGPSSATLLKMGALDVTKVVHGHQGWRLITCIWLHAGVVHLLINMLCLLFIGIRL 144

Query: 121 EQEFGFARIAPLYLLSGFGGSLLSCLHHKGKKEIVSVGASGALFGLLGTMLSELIANWTI 180
           EQEFGF RI  +YL+SG GGSL+S L  +     +SVGASGALFGL+G+MLSELI NW++
Sbjct: 145 EQEFGFVRIGLVYLISGLGGSLMSALFIRSS---ISVGASGALFGLIGSMLSELITNWSL 201

Query: 181 YANKCTSLSVLGSVIALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFILFLRPQYGYVSE 240
           YANK  +L  L  VI +NLA G +P    VDN AHIGG  SG LLGF++F+RPQ+ ++++
Sbjct: 202 YANKVAALLTLVFVIVVNLALGILP---RVDNFAHIGGLISGFLLGFVMFIRPQFAWINQ 258

Query: 241 KYIAAGYDAKHRQPKYMHYQQLCWIIALILLVLGY 275
           + +A G      + K+  YQ + W+ A I+L++G+
Sbjct: 259 RRVAPGQQPAPVKRKHKTYQYILWLAAAIMLIVGF 293

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42569431|ref|NP_180469.3| protein RHOMBOID-like 1 [Arabidopsis thaliana] gi|110737035|dbj|BAF00472.1| hypothetical protein [Arabidopsis thaliana] gi|330253108|gb|AEC08202.1| protein RHOMBOID-like 1 [Arabidopsis thaliana]

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 141/274 (51%), Positives = 187/274 (68%), Gaps = 12/274 (4%)

Query: 2   ENKPYAPEQWRAWLTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSFQPWK 61
           E +P+  + W  WL P I V  I +F  +M +NNCP  +A    C+ R  LGR++FQP K
Sbjct: 47  EFRPF--KLWFPWLVPAIVVANIALFAISMFINNCPKNSA---YCLAR-FLGRFAFQPMK 100

Query: 62  ENYLLGPSISTLRDLGGLDRNLIVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLE 121
           EN LLGPS  TL  +G LD +++V K++ +RL + +WLHAG+ H++ NM SL+ +  RLE
Sbjct: 101 ENPLLGPSSLTLEKMGALDVSMVVHKHEVWRLFTCIWLHAGVFHVLANMLSLIFIGIRLE 160

Query: 122 QEFGFARIAPLYLLSGFGGSLLSCLHHKGKKEIVSVGASGALFGLLGTMLSELIANWTIY 181
           QEFGF RI  LY++SGFGGSLLS L ++     +SVGASGALFGLLG MLSEL+ NWTIY
Sbjct: 161 QEFGFVRIGLLYMISGFGGSLLSSLFNRAG---ISVGASGALFGLLGAMLSELLTNWTIY 217

Query: 182 ANKCTSLSVLGSVIALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFILFLRPQYGYVSEK 241
           ANK  +L  L  +IA+NLA G +P    VDN AH+GGF SG LLGF+  +RPQYGY +++
Sbjct: 218 ANKFAALLTLIFIIAINLAVGILP---HVDNFAHLGGFTSGFLLGFVFLIRPQYGYFNQR 274

Query: 242 YIAAGYDAKHRQPKYMHYQQLCWIIALILLVLGY 275
               GY A   + K+  YQ + WI +L+LL+ GY
Sbjct: 275 NNPRGYAAPSAKSKHKPYQYVLWITSLVLLIAGY 308

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
TAIR|locus:2035190	309	RBL5 "RHOMBOID-like protein 5"	0.953	0.854	0.529	4.3e-70
TAIR|locus:2066102	389	RBL1 "RHOMBOID-like 1" [Arabid	0.945	0.673	0.470	1.8e-62
TAIR|locus:2015193	317	RBL2 "RHOMBOID-like 2" [Arabid	0.909	0.794	0.479	8.1e-60
TAIR|locus:2084465	394	RBL4 "RHOMBOID-like protein 4"	0.902	0.634	0.460	5.1e-58
TAIR|locus:2182925	346	RBL3 "RHOMBOID-like protein 3"	0.924	0.739	0.450	2.8e-57
TAIR|locus:2195067	307	RBL6 "RHOMBOID-like protein 6"	0.920	0.830	0.464	4.8e-55
TAIR|locus:2127258	313	RBL7 "RHOMBOID-like protein 7"	0.913	0.808	0.426	4.4e-52
TAIR|locus:2029376	351	KOM "KOMPEITO" [Arabidopsis th	0.765	0.603	0.389	2.9e-39
DICTYBASE|DDB_G0295849	489	DDB_G0295849 "rhomboid family	0.624	0.353	0.369	1.1e-22
ZFIN|ZDB-GENE-040704-75	857	rhbdf1 "rhomboid 5 homolog 1 (	0.483	0.156	0.342	1.2e-14

TAIR|locus:2035190 RBL5 "RHOMBOID-like protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
 Identities = 145/274 (52%), Positives = 182/274 (66%)

Query:     4 KPYAPEQWRAWLTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSFQPWKEN 63
             +P  P  W AWL P+I     + F  TM+VN+CPA+   S +C+L D+LGR SFQP KEN
Sbjct:    24 RPPIPVPWVAWLVPLILAANFVTFATTMYVNDCPAR---SDECLLFDVLGRLSFQPIKEN 80

Query:    64 YLLGPSISTLRDLGGLDRNLIVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQE 123
              LLGPSI TLR LG L+R L V + +++RL+S +WLH G +HL+ NM SLM +  RLEQE
Sbjct:    81 MLLGPSIPTLRKLGALERRL-VEEGERWRLISCIWLHGGFLHLMANMISLMCIGMRLEQE 139

Query:   124 FGFARI-APXXXXXXXXXXXXXXXHHKGKKEIVSVGASGALFGLLGTMLSELIANWTIYA 182
             FGF RI A                  +G++  VSVGASGALFGLLG MLSELI NWTIY 
Sbjct:   140 FGFMRIGALYVISGLGGSLVSCLTDSQGER--VSVGASGALFGLLGAMLSELITNWTIYE 197

Query:   183 NKCTSLSVLGSVIALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFILFLRPQYGYVSEKY 242
             NKCT+L  L  +I LNL+ GF+P VD   N AH GGF +G  LGF+L LRPQYGYV+ KY
Sbjct:   198 NKCTALMTLILIIVLNLSVGFLPRVD---NSAHFGGFLAGFFLGFVLLLRPQYGYVNPKY 254

Query:   243 IAAGYDAKHRQPKYMHYQQLCWIIALILLVLGYI 276
             I  GYD KH++ K+  YQ +    +L +L+ G+I
Sbjct:   255 IPPGYDMKHKKSKHKCYQHIFRFTSLAILLAGFI 288

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2066102 RBL1 "RHOMBOID-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
 Identities = 129/274 (47%), Positives = 173/274 (63%)

Query:     2 ENKPYAPEQWRAWLTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSFQPWK 61
             E +P+  + W  WL P I V  I +F  +M +NNCP  +A    C+ R  LGR++FQP K
Sbjct:    47 EFRPF--KLWFPWLVPAIVVANIALFAISMFINNCPKNSA---YCLAR-FLGRFAFQPMK 100

Query:    62 ENYLLGPSISTLRDLGGLDRNLIVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLE 121
             EN LLGPS  TL  +G LD +++V K++ +RL + +WLHAG+ H++ NM SL+ +  RLE
Sbjct:   101 ENPLLGPSSLTLEKMGALDVSMVVHKHEVWRLFTCIWLHAGVFHVLANMLSLIFIGIRLE 160

Query:   122 QEFGFARIAPXXXXXXXXXXXXXXXHHKGKKEIVSVGASGALFGLLGTMLSELIANWTIY 181
             QEFGF RI                  ++     +SVGASGALFGLLG MLSEL+ NWTIY
Sbjct:   161 QEFGFVRIGLLYMISGFGGSLLSSLFNRAG---ISVGASGALFGLLGAMLSELLTNWTIY 217

Query:   182 ANKCTSLSVLGSVIALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFILFLRPQYGYVSEK 241
             ANK  +L  L  +IA+NLA G +P VD   N AH+GGF SG LLGF+  +RPQYGY +++
Sbjct:   218 ANKFAALLTLIFIIAINLAVGILPHVD---NFAHLGGFTSGFLLGFVFLIRPQYGYFNQR 274

Query:   242 YIAAGYDAKHRQPKYMHYQQLCWIIALILLVLGY 275
                 GY A   + K+  YQ + WI +L+LL+ GY
Sbjct:   275 NNPRGYAAPSAKSKHKPYQYVLWITSLVLLIAGY 308

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2015193 RBL2 "RHOMBOID-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 127/265 (47%), Positives = 169/265 (63%)

Query:    11 WRAWLTPVIFVVCIIMFVYTMHVNNCPAK-TADSHQCVLRDILGRYSFQPWKENYLLGPS 69
             W +WL P I V  + +F+  M VN+CP K T  + +CV R  LGR+SFQP KEN L GPS
Sbjct:    31 WTSWLIPAIVVANLAVFIAVMFVNDCPKKITGPNKECVAR-FLGRFSFQPLKENPLFGPS 89

Query:    70 ISTLRDLGGLDRNLIVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARI 129
              STL  +G L+   +V ++Q +RLLS MWLHAGIIHL+ NM SL+ +  RLEQ+FGF R+
Sbjct:    90 SSTLEKMGALEWRKVVHEHQGWRLLSCMWLHAGIIHLLTNMLSLIFIGIRLEQQFGFIRV 149

Query:   130 APXXXXXXXXXXXXXXXHHKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLS 189
                                   +E +SVGASGALFGLLG MLSEL+ NWTIYANK  +L 
Sbjct:   150 GLIYLISGLGGSILSSLF---LQESISVGASGALFGLLGAMLSELLTNWTIYANKAAALI 206

Query:   190 VLGSVIALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFILFLRPQYGYVSEKYIAAGYDA 249
              L  +IA+NLA G +P VD   N AHIGGF +G  LGF+L +RPQYG+ + +      + 
Sbjct:   207 TLLFIIAINLALGMLPRVD---NFAHIGGFLTGFCLGFVLLVRPQYGWEASRT-----NT 258

Query:   250 KHRQPKYMHYQQLCWIIALILLVLG 274
                + KY  YQ + ++++++LLV+G
Sbjct:   259 SRTKRKYSMYQYVLFVVSVVLLVVG 283

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IDA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2084465 RBL4 "RHOMBOID-like protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 123/267 (46%), Positives = 170/267 (63%)

Query:    11 WRAWLTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSFQPWKENYLLGPSI 70
             W  WL P   V  + +FV TM+VNNCP K+ D   C   D LGR+SFQ  +EN LLGPS 
Sbjct:    64 WFPWLIPCFVVANVAVFVITMYVNNCPKKSGD---C-FADFLGRFSFQNTRENPLLGPSS 119

Query:    71 STLRDLGGLDRNLIVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIA 130
              TL+ +GGLD   +V+ ++ +RLLS  WLH G++HL++NM +L+ +  R+E+EFGF RI 
Sbjct:   120 LTLQTMGGLDVKKVVKGDEGWRLLSCNWLHGGVVHLLMNMLTLLFIGIRMEREFGFIRIG 179

Query:   131 PXXXXXXXXXXXXXXXHHKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSV 190
                               +     +SVGASGA+FGLLG MLSE+  NWTIY+NK  ++  
Sbjct:   180 LLYLISGFGGSILSALFLRSN---ISVGASGAVFGLLGGMLSEIFINWTIYSNKVVTIVT 236

Query:   191 LGSVIALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFILFLRPQYGYVSEKYIAAGYDAK 250
             L  ++A+NL  G +PGVD   N AHIGGFA+G LLGF+L +RP YG+++++    G  AK
Sbjct:   237 LVLIVAVNLGLGVLPGVD---NFAHIGGFATGFLLGFVLLIRPHYGWINQRN---GPGAK 290

Query:   251 -HRQPKYMHYQQLCWIIALILLVLGYI 276
              HR   +  YQ + W I+L++LV G+I
Sbjct:   291 PHR---FKIYQGILWTISLLILVAGFI 314

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2182925 RBL3 "RHOMBOID-like protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
 Identities = 122/271 (45%), Positives = 168/271 (61%)

Query:    10 QWRAWLTPVIFVVCIIMFVYTMHVNNCPAKTADSHQ----CVLRDILGRYSFQPWKENYL 65
             +W +WL P+  V  + +FV  M VNNCP    +SH+    CV +  LGR SF+P + N L
Sbjct:    52 RWTSWLVPMFVVANVAVFVVAMFVNNCP-NHFESHRLRGHCVAK-FLGRLSFEPLRTNPL 109

Query:    66 LGPSISTLRDLGGLDRNLIVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFG 125
              GPS  TL  LG L+ + +V K + +RLL+ +WLHAG+IHL  NM SL+ +  RLEQ+FG
Sbjct:   110 FGPSSHTLEKLGALEWSKVVEKKEGWRLLTCIWLHAGVIHLGANMLSLVFIGIRLEQQFG 169

Query:   126 FARIAPXXXXXXXXXXXXXXXHHKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKC 185
             F RI                   +     +SVGASGALFGLLG+MLSEL  NWTIY+NK 
Sbjct:   170 FVRIGVIYLLSGIGGSVLSSLFIRNS---ISVGASGALFGLLGSMLSELFTNWTIYSNKI 226

Query:   186 TSLSVLGSVIALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFILFLRPQYGYVSEKYIAA 245
              +L  L  VI +NLA G +P VD   N AH+GGF +G LLGFIL  RPQ+ +++ +++  
Sbjct:   227 AALLTLLFVILINLAIGILPHVD---NFAHVGGFVTGFLLGFILLARPQFKWLAREHMPQ 283

Query:   246 GYDAKHRQPKYMHYQQLCWIIALILLVLGYI 276
             G   ++   KY  YQ L W+++L+LL+ G++
Sbjct:   284 GTPLRY---KYKTYQYLLWLLSLVLLIAGFV 311

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2195067 RBL6 "RHOMBOID-like protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
 Identities = 124/267 (46%), Positives = 168/267 (62%)

Query:    10 QWRAWLTPVIFVVCIIMFVYTMHVNNCPAKTADSH-QCVLRDILGRYSFQPWKENYLLGP 68
             QW AWLTP I V  + +F+  M+ N+CP  T  ++  CV + +L R+SFQP +EN  LGP
Sbjct:    17 QWTAWLTPTIVVANVSIFIVVMYTNDCPKTTTGANGDCVAK-LLRRFSFQPLRENPFLGP 75

Query:    69 SISTLRDLGGLDRNLIVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFAR 128
             S STL  LG LD   +V+ N+K+RL+++MWLHAGIIHLV+NM  +++   RLEQ+FGF R
Sbjct:    76 SSSTLEKLGALDWKKVVQGNEKWRLITAMWLHAGIIHLVMNMFDVIIFGIRLEQQFGFIR 135

Query:   129 IAPXXXXXXXXXXXXXXXHHKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANK-CTS 187
             I                      ++ +SVGASGAL GL+G MLSEL+ NWTIY +K C  
Sbjct:   136 IGLIYLISGFGGSILSALF---LQKSISVGASGALLGLMGAMLSELLTNWTIYKSKLCAL 192

Query:   188 LSVLGSVIALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFILFLRPQYGYVSEKYIAAGY 247
             LS L  +IA+NLA G +P VD   N AHIGG  +G  LGFIL ++PQ G+  E   ++ Y
Sbjct:   193 LSFL-FIIAINLAIGLLPWVD---NFAHIGGLLTGFCLGFILLMQPQSGW-EEFRNSSQY 247

Query:   248 DAKHRQPKYMHYQQLCWIIALILLVLG 274
              A+ R  KY   Q + + +A +L+V G
Sbjct:   248 GARARS-KYNPCQYVLFFVAAVLVVAG 273

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2127258 RBL7 "RHOMBOID-like protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
 Identities = 114/267 (42%), Positives = 160/267 (59%)

Query:    10 QWRAWLTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSFQPWKENYLLGPS 69
             QWR+W+ P++ +  +++FV  M+ N+CP K   SH+C+ +  LGR+SF+ +K N LLGPS
Sbjct:    28 QWRSWIIPIVVIANVVVFVVVMYYNDCPHK---SHRCLAK-FLGRFSFESFKSNPLLGPS 83

Query:    70 ISTLRDLGGLDRNLIVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARI 129
              STL  +G L    IV K Q +RLL+ MWLHAG+IHL+ NM  +  +  RLEQ+FGF R+
Sbjct:    84 SSTLEKMGALAWGKIVHKRQVWRLLTCMWLHAGVIHLLANMCCVAYIGVRLEQQFGFVRV 143

Query:   130 APXXXXXXXXXXXXXXXHHKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLS 189
                                   ++ +SVGAS ALFGLLG MLSEL+ NWT Y NK  ++ 
Sbjct:   144 GTIYLVSGFCGSILSCLF---LEDAISVGASSALFGLLGAMLSELLINWTTYDNKGVAIV 200

Query:   190 VLGSVIALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFILFLRPQYGYVSEKY-IAAGYD 248
             +L  ++ +NL  G +P VD   N AHIGGF  G LLGF+L + PQ+ +   +  +  G  
Sbjct:   201 MLLVIVGVNLGLGTLPPVD---NFAHIGGFFGGFLLGFLLLIHPQFEWEENQVSLMPGTI 257

Query:   249 AKHRQPKYMHYQQLCWIIALILLVLGY 275
              K   PKY   Q +  I+A I+ V G+
Sbjct:   258 VK---PKYNTCQLVLCIVASIVFVAGF 281

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2029376 KOM "KOMPEITO" [Arabidopsis thaliana (taxid:3702)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 86/221 (38%), Positives = 129/221 (58%)

Query:    14 WLTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSFQPWKENYLLGPSISTL 73
             WL  V  ++ I++F  TM VN+C   + +SH      +LGR+SFQ   EN +LGPS STL
Sbjct:    49 WLVSVFVLLQIVLFAVTMGVNDC---SGNSHGHCSAKLLGRFSFQSLSENPMLGPSASTL 105

Query:    74 RDLGGLDRNLIVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPXX 133
               +GGL    +   ++ +R+L+S WLH+G+ HL +N+ SL+ V   +EQ+FG  RIA   
Sbjct:   106 EHMGGLSWKALTENHEIWRILTSPWLHSGLFHLFINLGSLIFVGIYMEQQFGPLRIAVIY 165

Query:   134 XXXXXXXXXXXXXHHKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGS 193
                               + I S+ +  A FGL+G MLS L  NW +Y +K ++L+++ +
Sbjct:   166 FLSGIMGSLFAVLF---VRNIPSISSGAAFFGLIGAMLSALAKNWNLYNSKISALAIIFT 222

Query:   194 VIALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFILFLRPQ 234
             +  +N   GF+P +D   N A+IGGF SG LLGF+L  +PQ
Sbjct:   223 IFTVNFLIGFLPFID---NFANIGGFISGFLLGFVLLFKPQ 260

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

DICTYBASE|DDB_G0295849 DDB_G0295849 "rhomboid family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 268 (99.4 bits), Expect = 1.1e-22, P = 1.1e-22
 Identities = 68/184 (36%), Positives = 100/184 (54%)

Query:    50 DILGRYSFQPWKENYLLGPSISTLRDLGGLDRNLIVRKNQKYRLLSSMWLHAGIIHLVVN 109
             +I+    F+PWK N   GP+  TL D+G     LI+   + +R  + ++LH GI H ++N
Sbjct:   254 EIIYNGGFEPWKTNPWFGPNSYTLLDVGAKYSPLILN-GEWWRFFTPIFLHVGIFHYLMN 312

Query:   110 MTSLMLVSYRLEQEFGFARIAPXXXXXXXXXXXXXXXHHKGKKEIVSVGASGALFGLLGT 169
             M + + V  +LE+ +G  RI P                       V VGASGA+FG LG 
Sbjct:   313 MVTQLRVGMQLERAYGGHRIVPIYLLCGVAGNLCSAIMLPNS---VQVGASGAIFGFLGV 369

Query:   170 MLSELIANWTIYANKCTSL-SVLGSVIALNLAFG-FIPGVDGVDNLAHIGGFASGVLLGF 227
             +L++LI NW++ A    +  S+L S+I  + A G F+PGVD   N AH+GGF +G+L   
Sbjct:   370 LLTDLIRNWSVLAKPWLNFGSLLFSIIT-SFAVGLFLPGVD---NFAHLGGFIAGILTAA 425

Query:   228 ILFL 231
             I FL
Sbjct:   426 I-FL 428

GO:0016021 "integral to membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=ISS

ZFIN|ZDB-GENE-040704-75 rhbdf1 "rhomboid 5 homolog 1 (Drosophila)" [Danio rerio (taxid:7955)]

 Score = 184 (69.8 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
 Identities = 48/140 (34%), Positives = 70/140 (50%)

Query:    88 NQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPXXXXXXXXXXXXXXXH 147
             +Q YRL  S++LHAGI+H +V++   M +   LE+  G+ RI+                 
Sbjct:   653 DQFYRLWLSLFLHAGILHCLVSVCFQMTILRDLEKLAGWLRISIIYILSGITGNLASAIF 712

Query:   148 HKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFIPGV 207
                + E   VG +G+ FG+L  +  ELI +W I A    + + L  V+    AFG +P +
Sbjct:   713 LPYRAE---VGPAGSQFGILACLFVELIQSWQILAQPWRAFTKLLCVVLFLFAFGLLPWI 769

Query:   208 DGVDNLAHIGGFASGVLLGF 227
             D   N AHI GF SG  L F
Sbjct:   770 D---NFAHISGFISGFFLSF 786

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0000139 "Golgi membrane" evidence=ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=ISS

GO:0016477 "cell migration" evidence=ISS

GO:0061136 "regulation of proteasomal protein catabolic process" evidence=ISS

GO:0050709 "negative regulation of protein secretion" evidence=ISS

GO:0008283 "cell proliferation" evidence=ISS

GO:0042058 "regulation of epidermal growth factor receptor signaling pathway" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0019838 "growth factor binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	0.691
3rd Layer	3.4.21.105	0.737

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	277
pfam01694	146	pfam01694, Rhomboid, Rhomboid family	8e-38
COG0705	228	COG0705, COG0705, Membrane associated serine prote	3e-20
PTZ00101	278	PTZ00101, PTZ00101, rhomboid-1 protease; Provision	2e-13
TIGR03902	154	TIGR03902, rhom_GG_sort, rhomboid family GlyGly-CT	1e-06

>gnl|CDD|216649 pfam01694, Rhomboid, Rhomboid family

 Score =  130 bits (328), Expect = 8e-38
 Identities = 70/151 (46%), Positives = 95/151 (62%), Gaps = 5/151 (3%)

Query: 84  IVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLL 143
           ++++ Q +RL++SM+LHAG +HL+ NM +L+     LE+  G  R   LYLLSG  GSLL
Sbjct: 1   LLQRGQLWRLITSMFLHAGWLHLLFNMLALLFFGIPLERILGSVRFLLLYLLSGLAGSLL 60

Query: 144 SCLHHKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGF 203
           S L         SVGASGA+FGLLG +L  L  N  +  N   +L +L  +I LNL  GF
Sbjct: 61  SYLFS--PASSPSVGASGAIFGLLGALLVLLPRNRILLFNFPGALLLLLGIILLNLLLGF 118

Query: 204 IPGVDGVDNLAHIGGFASGVLLGFILFLRPQ 234
           +P   G+ N AH+GG  +G+LLGF+L  RPQ
Sbjct: 119 LP---GISNFAHLGGLIAGLLLGFLLLRRPQ 146

This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. Length = 146

>gnl|CDD|223777 COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism]

 Score = 86.0 bits (213), Expect = 3e-20
 Identities = 48/149 (32%), Positives = 73/149 (48%), Gaps = 4/149 (2%)

Query: 87  KNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCL 146
           ++Q +RL+++++LHAG +HL+ NM +L +    LE+  G  R    YLLSG    L   L
Sbjct: 65  RDQLWRLITAIFLHAGFLHLLFNMLALWVFGSNLERRLGTLRFLLFYLLSGLLAGLAQVL 124

Query: 147 HHKGKKEIVSVGASGALFGLLGTM--LSELIANWTIYANKCTSLSVL-GSVIALNLAFGF 203
               K    S+GASGA+FGLLG    L        ++ +      +L    +  +L  G 
Sbjct: 125 FG-PKGGAPSLGASGAIFGLLGAYFLLFPFARILLLFLSLPRPALILILIWLLYSLFSGA 183

Query: 204 IPGVDGVDNLAHIGGFASGVLLGFILFLR 232
                 V   AH+GG   G+LL  +L  +
Sbjct: 184 GSFGPSVAWSAHLGGLIGGLLLAALLSRK 212

Length = 228

>gnl|CDD|185445 PTZ00101, PTZ00101, rhomboid-1 protease; Provisional

 Score = 68.3 bits (167), Expect = 2e-13
 Identities = 48/163 (29%), Positives = 84/163 (51%), Gaps = 4/163 (2%)

Query: 66  LGPSISTLRDLGGLDRNLIVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFG 125
           L PS S L  LG    + I ++ + +RL+  ++LHA I H   N+   + + + LE+ +G
Sbjct: 79  LTPSDSLLVTLGANVASRI-KQGEIHRLILPIFLHANIFHTFFNVFFQLRMGFTLEKNYG 137

Query: 126 FARIAPLYLLSGFGGSLLSCLHHKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKC 185
             +I  LY L+G  G++LS          + VGAS +  GLLG + SELI  W +  ++ 
Sbjct: 138 IVKIIILYFLTGIYGNILSSSVTYCP---IKVGASTSGMGLLGIVTSELILLWHVIRHRE 194

Query: 186 TSLSVLGSVIALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFI 228
             +  +     ++  + F      +D++ H+GG  SG+ +G +
Sbjct: 195 RVVFNIIFFSLISFFYYFTFNGSNIDHVGHLGGLLSGISMGIL 237

Length = 278

>gnl|CDD|234388 TIGR03902, rhom_GG_sort, rhomboid family GlyGly-CTERM serine protease

 Score = 46.8 bits (112), Expect = 1e-06
 Identities = 45/163 (27%), Positives = 66/163 (40%), Gaps = 20/163 (12%)

Query: 75  DLGGLDRNLIVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYL 134
           DL   DR  I  + + +RLL+  ++H    HL++N+  L+L+    E+     R+  L L
Sbjct: 2   DLLAYDRAAI-LEGEWWRLLTGHFVHLNWWHLLMNLAGLLLLWLLFERHLRARRLLLLLL 60

Query: 135 LSGFGGSLLSCLHHKGKKEIVS-VGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGS 193
           L     SL   L       +   VG SG L GL         A   I   + +   +L  
Sbjct: 61  LLSLLISLGLLLFL---PSLQWYVGLSGVLHGLFA-----WGALRDIRYGRRSGWLLLLG 112

Query: 194 VIALNLAFGFIPGVDGVDN---------LAHIGGFASGVLLGF 227
           VIA  LA+  + G                AH+ G  SG+LL  
Sbjct: 113 VIA-KLAWEQLFGASASTAELIGAPVATEAHLAGALSGLLLAL 154

This model describes a rhomboid-like intramembrane serine protease. Its species distribution closely matches model TIGR03501, GlyGly-CTERM, which describes a protein targeting domain analogous to LPXTG and PEP-CTERM. In a number of species (Ralstonia eutropha ,R. metallidurans, R. solanacearum, Marinobacter aquaeolei, etc) with just one GlyGly-CTERM protein (i.e., a dedicated system), the rhombosortase and GlyGly-CTERM genes are adjacent. Length = 154

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	277
PTZ00101	278	rhomboid-1 protease; Provisional	100.0
KOG2289	316	consensus Rhomboid family proteins [Signal transdu	100.0
PRK10907	276	intramembrane serine protease GlpG; Provisional	99.96
COG0705	228	Membrane associated serine protease [Amino acid tr	99.95
PF01694	145	Rhomboid: Rhomboid family; InterPro: IPR022764 In	99.9
KOG2290	652	consensus Rhomboid family proteins [Signal transdu	99.82
KOG2632	258	consensus Rhomboid family proteins [Function unkno	99.75
KOG2980	310	consensus Integral membrane protease of the rhombo	98.99
PF08551	99	DUF1751: Eukaryotic integral membrane protein (DUF	98.58
PF04511	197	DER1: Der1-like family; InterPro: IPR007599 The en	98.47
KOG0858	239	consensus Predicted membrane protein [Function unk	97.91
KOG2890	326	consensus Predicted membrane protein [Function unk	97.35
COG5291	313	Predicted membrane protein [Function unknown]	95.83
KOG4463	323	consensus Uncharacterized conserved protein [Funct	95.6
KOG2290	652	consensus Rhomboid family proteins [Signal transdu	92.75

>PTZ00101 rhomboid-1 protease; Provisional

Probab=100.00  E-value=2.8e-35  Score=260.43  Aligned_cols=193  Identities=27%  Similarity=0.436  Sum_probs=153.7

Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHhhhhcccccccCcccccCCCCHHHHHhcCCCchhhhhhc
Q 023789            8 PEQWRAWLTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSFQPWKENYLLGPSISTLRDLGGLDRNLIVRK   87 (277)
Q Consensus         8 ~~~~~p~vt~~li~i~v~vf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~L~~~Ga~~~~~i~~~   87 (277)
                      |+.+.+.+|..++++|+++|+++....                           .+..++|+++.+.++|+++++.+ .+
T Consensus        48 p~f~i~~l~~~Iiii~iivfil~l~~~---------------------------~~~~l~p~~~~L~~~Ga~~~~~i-~~   99 (278)
T PTZ00101         48 PHFTWKSFIMAISIIQIIVFIISVSIK---------------------------PADFLTPSDSLLVTLGANVASRI-KQ   99 (278)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHhc---------------------------ccccCCCCHHHHHHHhCcchhhh-hc
Confidence            444557799999999999999876421                           11235688899999999998766 68


Q ss_pred             CCceeeeecccccCChhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhhcCCCCccccccHHHHHHHH
Q 023789           88 NQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLHHKGKKEIVSVGASGALFGLL  167 (277)
Q Consensus        88 gq~wrllTs~F~H~~~~HLl~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~~~~~~~~vGaSG~i~Gl~  167 (277)
                      +||||++|++|+|.|+.|+++||+.++.+|..+|+.+|++|+..+|+++|+.|++++..+   .+...++||||++||++
T Consensus       100 gq~WRLiT~~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~ilYl~sGi~G~l~s~~~---~~~~~svGASgAifGLi  176 (278)
T PTZ00101        100 GEIHRLILPIFLHANIFHTFFNVFFQLRMGFTLEKNYGIVKIIILYFLTGIYGNILSSSV---TYCPIKVGASTSGMGLL  176 (278)
T ss_pred             CCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHH---ccCCcEEehhHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999887   45678999999999999


Q ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhh
Q 023789          168 GTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFILFL  231 (277)
Q Consensus       168 g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vs~~aHlgG~l~G~l~g~~~~~  231 (277)
                      |+.++.....|...+.+...+..+..+..+.+...+....+++|+.||+||+++|+++|..+.+
T Consensus       177 Ga~~~~lil~w~~~~~~~~~~~~~i~~~li~~~l~~~~~g~~Id~~aHlGG~i~G~llg~~~~~  240 (278)
T PTZ00101        177 GIVTSELILLWHVIRHRERVVFNIIFFSLISFFYYFTFNGSNIDHVGHLGGLLSGISMGILYNS  240 (278)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHh
Confidence            9998777677665444433332222222222222222224679999999999999999988754

>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-35  Score=264.19  Aligned_cols=257  Identities=45%  Similarity=0.751  Sum_probs=223.6

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHhcCCCCCCCC--CchhHHhhhhcccccccCcccccCCCCHHHHHhcCCCchhhhhh
Q 023789            9 EQWRAWLTPVIFVVCIIMFVYTMHVNNCPAKTAD--SHQCVLRDILGRYSFQPWKENYLLGPSISTLRDLGGLDRNLIVR   86 (277)
Q Consensus         9 ~~~~p~vt~~li~i~v~vf~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~L~~~Ga~~~~~i~~   86 (277)
                      ..+.++........|+..|....+.++++....|  -..|.-..++.+|.+.+.++||..+|+.+++.+.|+..-++.++
T Consensus        36 ~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~f~~~~~~~~l~~f~~~~~~~n~~~~~s~~~~~~~~~~~i~~~~~  115 (316)
T KOG2289|consen   36 RSWTKWLIPRFAVANVPEFIVVMYVNDCPKCCPPPIFMLCLAIVFLGRFSFQGLRENPLLGPSSLTLEKMGGLLIYKPVH  115 (316)
T ss_pred             chhhHHHHhHHHhhccchhheeeeeecccccCCCchhhhhhhhhhhheeeeeeeccCCccCcCCCCccccCCceecChhh
Confidence            4455678888889999999777777777663322  12254334889999999999999999999999999999889999


Q ss_pred             cCCceeeeecccccCChhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhhcCCCCccccccHHHHHHH
Q 023789           87 KNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLHHKGKKEIVSVGASGALFGL  166 (277)
Q Consensus        87 ~gq~wrllTs~F~H~~~~HLl~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~~~~~~~~vGaSG~i~Gl  166 (277)
                      ++|+||++|++|+|+|+.|+.+||+.+.++|..+|..+|.+|+.++|+++|+.|++++.++   +++.++|||||++||+
T Consensus       116 r~E~WRllTym~LHaGi~HL~~N~~~ql~iGi~LE~~~G~~RiglIYl~gg~aGSlls~l~---d~~~~sVGASggvfaL  192 (316)
T KOG2289|consen  116 RGELWRLLTYMWLHAGIFHLLLNMLSQLFIGIPLEQVHGFLRIGLIYLAGGVAGSLLSSLF---DPNSISVGASGGVFAL  192 (316)
T ss_pred             hchhHHHHHHHHHhcCHHHHHHHHHHHHhccccHHhhcCceEEeeehhhhhhhhHHHHHHh---ccCCceecccHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999   7889999999999999


Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhhcccCCccchhccccc
Q 023789          167 LGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFILFLRPQYGYVSEKYIAAG  246 (277)
Q Consensus       167 ~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vs~~aHlgG~l~G~l~g~~~~~~~~~~~~~~~~~~~~  246 (277)
                      +|+.++....||..++.+...+..+++++.+++..++.|.   +++++|+||++.|..+++....+.+..|...+...  
T Consensus       193 lgA~Ls~l~~Nw~~m~~~~~~l~~ll~Ii~i~l~~G~~~~---~~~~~h~gg~~~G~~~~fil~~~g~~~~~~~~~~~--  267 (316)
T KOG2289|consen  193 LGAHLSNLLTNWTIMKNKFAALRTLLIIIFINLDLGFAPY---VDNFAHIGGLLAGFLLGFVLHIGGQLGGITIGLIV--  267 (316)
T ss_pred             HHHHHHHHHhhHHHhcchHHHHHHHHHHHHHHHhhccccc---eeccccccccCCCcchhHHhhhccceeEEecccee--
Confidence            9999999999999999988888888888899999999888   88899999999999999999999999888765543  


Q ss_pred             cccccCCCccchHHHHHHHHHHHHHHHhhc
Q 023789          247 YDAKHRQPKYMHYQQLCWIIALILLVLGYI  276 (277)
Q Consensus       247 ~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~  276 (277)
                         .|.+.|++.+|...++...+++++++.
T Consensus       268 ---~~~~~~~~~~q~~~w~~~~~~~v~~~~  294 (316)
T KOG2289|consen  268 ---LRVFSKRLPYQLLLWIVLLVYLVAGLF  294 (316)
T ss_pred             ---eeccccccccchHHHHHHHHHHHHHHH
Confidence               356666777777777777777777654

>PRK10907 intramembrane serine protease GlpG; Provisional

Probab=99.96  E-value=6.3e-29  Score=220.40  Aligned_cols=178  Identities=15%  Similarity=0.176  Sum_probs=127.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHhhhhcccccccCcccccCCCCHHHHHhcCCCchhhhhhcCCce
Q 023789           12 RAWLTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSFQPWKENYLLGPSISTLRDLGGLDRNLIVRKNQKY   91 (277)
Q Consensus        12 ~p~vt~~li~i~v~vf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~L~~~Ga~~~~~i~~~gq~w   91 (277)
                      ..++|..++++|+++|++......             .......                      . +|.....++|||
T Consensus        93 ~~p~T~~li~i~i~vf~l~~~~~~-------------~~~~~~l----------------------~-~~~~~~~~~q~W  136 (276)
T PRK10907         93 AGPLTLGVMIACVVVFILMQILGD-------------QTVMLWL----------------------A-WPFDPSLKFELW  136 (276)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhcc-------------HHHHHHH----------------------h-ccccccccCCcH
Confidence            456999999999999998765321             1111111                      1 111233589999


Q ss_pred             eeeecccccCChhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhhcCCCCccccccHHHHHHHHHHHH
Q 023789           92 RLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLHHKGKKEIVSVGASGALFGLLGTML  171 (277)
Q Consensus        92 rllTs~F~H~~~~HLl~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~~~~~~~~vGaSG~i~Gl~g~~~  171 (277)
                      |++|++|+|.|+.|+++||+++|.+|..+|+.+|+++++.+|+++++.|++.+.++.    ....+|+||++||++|+..
T Consensus       137 Rl~T~~flH~~~~Hl~fNml~l~~lG~~iE~~~G~~~~l~l~l~s~i~~~~~~~~~~----~~~~gGaSGvVygL~g~~~  212 (276)
T PRK10907        137 RYFTHALLHFSLLHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGWVQSKFS----GPWFGGLSGVVYALMGYVW  212 (276)
T ss_pred             HHHhHHHHhCCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHc----cchhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999988873    3468899999999999875


Q ss_pred             HHHHHhhh-hhhhhHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhhc
Q 023789          172 SELIANWT-IYANKCTSLSVLGSVIALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFILFLR  232 (277)
Q Consensus       172 ~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vs~~aHlgG~l~G~l~g~~~~~~  232 (277)
                      ........ ....+...+..+++++..... +..  ..+|++.||++|+++|+++|+...++
T Consensus       213 ~~~~~~p~~~~~lp~~~~~f~llwl~~g~~-~~~--g~~Ian~AHlgGli~Gll~g~~~~~~  271 (276)
T PRK10907        213 LRGERDPQSGIYLPRGLIAFALLWLVAGYF-DLF--GMSIANAAHVAGLAVGLAMAFWDTRN  271 (276)
T ss_pred             HHhccccccchhhhHHHHHHHHHHHHHHHH-Hcc--CcccHHHHHHHHHHHHHHHHHHhhhh
Confidence            33211100 011122222223333322221 222  45799999999999999999876543

>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]

Probab=99.95  E-value=4.8e-27  Score=204.43  Aligned_cols=202  Identities=26%  Similarity=0.371  Sum_probs=145.4

Q ss_pred             CCCCCCCCCc--chHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHhhhhcccccccCcccccCCCCHHHHHhcCCCc
Q 023789            3 NKPYAPEQWR--AWLTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSFQPWKENYLLGPSISTLRDLGGLD   80 (277)
Q Consensus         3 ~~~~~~~~~~--p~vt~~li~i~v~vf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~L~~~Ga~~   80 (277)
                      +.+.++.+..  +++|..++.+|+++|+...+.......       ......+.+++.|.                    
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~~~~~~~~~~~~~~--------------------   57 (228)
T COG0705           5 RRDRNPWRLIRAPPVTLFLILLNILVFLLELVLGWSAIF-------LLTFLFRLFGLYPL--------------------   57 (228)
T ss_pred             ccccchHHhcccchHHHHHHHHHHHHHHHHHHccchHHH-------HHHHhhhHHhhcch--------------------
Confidence            3444444444  889999999999999998865431000       00011112233332                    


Q ss_pred             hhhhhhcC---CceeeeecccccCChhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 023789           81 RNLIVRKN---QKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLHHKGKKEIVSV  157 (277)
Q Consensus        81 ~~~i~~~g---q~wrllTs~F~H~~~~HLl~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~~~~~~~~v  157 (277)
                        ......   |+||++|++|+|.|+.|+++||+.++.+|..+|+..|+.+++.+|+.+|+++++.+..+.. ....+++
T Consensus        58 --~~~~~~~~~~~w~lit~~FlH~~~~Hll~N~~~l~~fg~~le~~~G~~~f~~~yl~~gl~~~~~~~~~~~-~~~~~~~  134 (228)
T COG0705          58 --NLLGALARDQLWRLITAIFLHAGFLHLLFNMLALWVFGSNLERRLGTLRFLLFYLLSGLLAGLAQVLFGP-KGGAPSL  134 (228)
T ss_pred             --hhhccccccchHHHHHHHHHHhhHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHcc-cccCccc
Confidence              222111   9999999999999999999999999999999999999999999999999999999888842 1114899


Q ss_pred             ccHHHHHHHHHHHHHHHHHhhhhhh---hhHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhhccc
Q 023789          158 GASGALFGLLGTMLSELIANWTIYA---NKCTSLSVLGSVIALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFILFLRPQ  234 (277)
Q Consensus       158 GaSG~i~Gl~g~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~vs~~aHlgG~l~G~l~g~~~~~~~~  234 (277)
                      ||||+++|++++++...........   .+......+.+++..++........+++++.||++|++.|.+++..+.++.+
T Consensus       135 GASG~i~gllga~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~va~~aHl~G~i~G~l~~~~~~~~~~  214 (228)
T COG0705         135 GASGAIFGLLGAYFLLFPFARILLLFLSLPRPALILILIWLLYSLFSGAGSFGPSVAWSAHLGGLIGGLLLAALLSRKLR  214 (228)
T ss_pred             chhHHHHHHHHHHHHHccccchhhhhccCchhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            9999999999999754332222111   3344555566666666666655333479999999999999999988876543

>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.90  E-value=9.1e-25  Score=176.55  Aligned_cols=143  Identities=40%  Similarity=0.615  Sum_probs=102.6

Q ss_pred             hcCCceeeeecccccCChhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhhcCCCCc-cccccHHHHH
Q 023789           86 RKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLHHKGKKEI-VSVGASGALF  164 (277)
Q Consensus        86 ~~gq~wrllTs~F~H~~~~HLl~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~~~~~~-~~vGaSG~i~  164 (277)
                      +++|+||++|++|+|.|+.|+++|++.++.+|..+|+.+|++++..+|+.+++.+++...+..   +.. +.+|+||+++
T Consensus         2 ~~~~~wrl~T~~f~h~~~~hl~~n~~~l~~~g~~lE~~~G~~~~~~~~l~~~~~~~l~~~~~~---~~~~~~~G~Sg~~~   78 (145)
T PF01694_consen    2 QNGQWWRLFTSPFVHANFLHLLFNLLALWFFGSLLERRLGSRRFLALYLLSGLLGSLLSLLFS---PPNQPYVGASGAVF   78 (145)
T ss_dssp             GCC-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----S-----SSHHHHH
T ss_pred             CCCcchhhhHHHHHccCHHHHHHHHHHHHHhhhhHhhhccchHHHHHHHHHHHhhhhcccccc---ccccccCCCcccch
Confidence            589999999999999999999999999999999999999999999999999999999998884   344 8999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhhccc
Q 023789          165 GLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFILFLRPQ  234 (277)
Q Consensus       165 Gl~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vs~~aHlgG~l~G~l~g~~~~~~~~  234 (277)
                      |++++.......+++....+..........+...+..+.   .+++++.+|++|+++|++++..+.+|+|
T Consensus        79 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~hl~G~~~G~~~~~~~~~~~~  145 (145)
T PF01694_consen   79 GLLGAFLFLYPQNKKRLRFIYLALVVPIIVLVIILLLGF---IPNISFLGHLGGFLAGLLYGFLILRRPQ  145 (145)
T ss_dssp             HHHHHHHHHHHCCCCCS---HCCCCCCCCCCCHHHCTSS---SSTTTHHHHHHHHHHHHHHHHHHCH---
T ss_pred             HHHHHHHHHHhhccchhhcchHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            999999766554433222211111111111122222222   4569999999999999999999887653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....

>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=99.82  E-value=1.9e-20  Score=170.57  Aligned_cols=165  Identities=33%  Similarity=0.499  Sum_probs=141.5

Q ss_pred             cccccCCCCHHHHHhcCCCchhhhh-hcCCceeeeecccccCChhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q 023789           61 KENYLLGPSISTLRDLGGLDRNLIV-RKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFG  139 (277)
Q Consensus        61 ~~~~~~~~~~~~L~~~Ga~~~~~i~-~~gq~wrllTs~F~H~~~~HLl~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~  139 (277)
                      .+|..+..+.+.+.+.-++-|...- ...|.||++||.|+|+++.|++..+...+.+-+.+|+..|+.|...+|+++|+.
T Consensus       421 HEeAtLCSQVhC~d~VCGllPFln~e~PdQfYRL~~SLFlHagviH~~vSi~FQm~vmrdlEkL~g~~riAIiy~~SGit  500 (652)
T KOG2290|consen  421 HEEATLCSQVHCFDGVCGLLPFLNPEVPDQFYRLWLSLFLHAGVIHLLVSICFQMTVMRDLEKLAGWHRIAIIYFLSGIT  500 (652)
T ss_pred             hhhhhhhhhhhhhhcccccccccCCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcchhhheeeeccccc
Confidence            4666666677777777666553222 468999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCccccccHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 023789          140 GSLLSCLHHKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFIPGVDGVDNLAHIGGF  219 (277)
Q Consensus       140 g~l~~~l~~~~~~~~~~vGaSG~i~Gl~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vs~~aHlgG~  219 (277)
                      ||+++.++   .++.+.+|.||+=+|+++..++.++..|+...++.....-+++.+.... .|++|.   ||+++|+.|+
T Consensus       501 GNLASAIF---lpY~~eVgPa~sQ~Gila~l~vEl~qs~~il~~~w~a~~~Lia~~L~L~-iGliPW---iDN~aHlfG~  573 (652)
T KOG2290|consen  501 GNLASAIF---LPYRAEVGPAGSQFGILACLFVELFQSWQILERPWRAFFHLIATLLVLC-IGLIPW---IDNWAHLFGT  573 (652)
T ss_pred             ccchheee---eccccccCCcccccchHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHH-hccccc---hhhHHHHHHH
Confidence            99999999   7889999999999999999999999999998888776655544444333 489898   9999999999


Q ss_pred             HHHHHHHHHHhhc
Q 023789          220 ASGVLLGFILFLR  232 (277)
Q Consensus       220 l~G~l~g~~~~~~  232 (277)
                      +.|++..+.+.+-
T Consensus       574 i~GLl~s~~~~PY  586 (652)
T KOG2290|consen  574 IFGLLTSIIFLPY  586 (652)
T ss_pred             HHHHHHHHHhhcc
Confidence            9999999988764

>KOG2632 consensus Rhomboid family proteins [Function unknown]

Probab=99.75  E-value=1.4e-17  Score=143.70  Aligned_cols=178  Identities=20%  Similarity=0.211  Sum_probs=126.1

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHhhhhcccccccCcccccCCCCHHHHHhcCCCchhhhhhcC
Q 023789            9 EQWRAWLTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSFQPWKENYLLGPSISTLRDLGGLDRNLIVRKN   88 (277)
Q Consensus         9 ~~~~p~vt~~li~i~v~vf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~L~~~Ga~~~~~i~~~g   88 (277)
                      --+.|.+|.++..++.++|+......                ..+.+                       ..+.....+.
T Consensus        11 ~~~~p~~ts~~~~~~~~i~lv~~~~~----------------i~~~~-----------------------~l~~~~l~~~   51 (258)
T KOG2632|consen   11 WMKIPLLTSIVVVLAILIYLVSFFPG----------------IVEVL-----------------------GLPSELLINW   51 (258)
T ss_pred             cccchHHHHHHHHHHHHHHHHhccch----------------hhhHh-----------------------cCCHHHhhhH
Confidence            33568899999999999999765311                11111                       1123567899


Q ss_pred             CceeeeecccccCChhHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHHhhc------CCCCccccccHH
Q 023789           89 QKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFG-FARIAPLYLLSGFGGSLLSCLHHK------GKKEIVSVGASG  161 (277)
Q Consensus        89 q~wrllTs~F~H~~~~HLl~N~~~l~~~G~~lE~~~G-~~~~l~lyl~~gi~g~l~~~l~~~------~~~~~~~vGaSG  161 (277)
                      |.||++||+++|.+..|+++||+++|..|..+|+.+| +.+++....+.++..+++.++...      .......+|.||
T Consensus        52 ql~RL~Ty~l~H~s~~hllfnmlaL~~~g~~fE~~~G~t~~~l~~~~llalf~gIl~ll~~~~~~~~d~~~~~~a~G~s~  131 (258)
T KOG2632|consen   52 QLYRLITYALVHLSLPHLLFNMLALWPLGSQFERTHGTTVRILMFTVLLALFSGILYLLAYHVFLLSDLVYVEGAIGFSG  131 (258)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhchhHHHhhccceehHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccccH
Confidence            9999999999999999999999999999999999999 899999999999999988887752      112345799999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHH
Q 023789          162 ALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFI  228 (277)
Q Consensus       162 ~i~Gl~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vs~~aHlgG~l~G~l~g~~  228 (277)
                      +.|++++...................-.....+..+.+..-+.   ++.|+.+|++|+++|+.+++.
T Consensus       132 v~Fam~~~~~~~sp~r~~~~fg~~siP~~l~Pw~lLi~~~~lv---p~aSFlghl~GllvG~ay~~~  195 (258)
T KOG2632|consen  132 VLFAMMAVLEVQSPVRSRSVFGLFSIPIVLAPWALLIATQILV---PQASFLGHLCGLLVGYAYAFS  195 (258)
T ss_pred             HHHHHHHHHhhcCcccchhhcccccccHHHHHHHHHHHHHHHc---cCchHHHHHHHHHHHHHHHHH
Confidence            9999999965432211100010000011122333333333344   459999999999999999983

>KOG2980 consensus Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis [Signal transduction mechanisms]

Probab=98.99  E-value=2.7e-10  Score=100.36  Aligned_cols=179  Identities=20%  Similarity=0.245  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHhhhhcccccccCcccccCCCCHHHHHhcCCCchhhhhhcCCceeee
Q 023789           15 LTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSFQPWKENYLLGPSISTLRDLGGLDRNLIVRKNQKYRLL   94 (277)
Q Consensus        15 vt~~li~i~v~vf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~L~~~Ga~~~~~i~~~gq~wrll   94 (277)
                      +.+.++++|+++|..|.+.+-             +.....|...                        +.....--|.++
T Consensus       117 ~v~~ll~~n~~vf~lWrv~~~-------------~~~~~~~mls------------------------~~~~~t~~w~i~  159 (310)
T KOG2980|consen  117 VVFGLLIANAFVFTLWRVPQK-------------QFTMIPWMLS------------------------RNAYKTGCWKII  159 (310)
T ss_pred             chhHHHHHHHHHHHHHHhcch-------------hhhhhhHHhh------------------------cccccccceeEE
Confidence            888999999999999986421             1222222211                        112233446699


Q ss_pred             ecccccCChhHHHHHHHHHHHHHH-HHHHhhchhHHHHHHHHHHHHHHHHHHHhhc-CCCCccccccHHHHHHHHHHHHH
Q 023789           95 SSMWLHAGIIHLVVNMTSLMLVSY-RLEQEFGFARIAPLYLLSGFGGSLLSCLHHK-GKKEIVSVGASGALFGLLGTMLS  172 (277)
Q Consensus        95 Ts~F~H~~~~HLl~N~~~l~~~G~-~lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~-~~~~~~~vGaSG~i~Gl~g~~~~  172 (277)
                      +|.|.|.+.+|+..||+.++.+.. .+....|...+..+|+.++..|......-.. .....+.+||||+++++++....
T Consensus       160 ~s~Fsh~~a~h~g~~~~~~~~y~~~a~~~~~~~~~~~AlylSa~~~~~~i~~~~~v~~~~~gp~LGAsGav~ai~a~~~~  239 (310)
T KOG2980|consen  160 LSTFSHYSALHLGPNMLVLKSYLAGALKGSLGFSSFFALYLSAGVKGLFISVKDKVPTSWAGPSLGASGAVYAILALDCT  239 (310)
T ss_pred             eehhcchhHhhhcHHHHHHHHHhcccccCCcchhhcccceeccccccceeEeeccccccccccccccchHHHHHHHHHhh
Confidence            999999999999999999998888 7888999999999999666665544332211 23456789999999999998853


Q ss_pred             HHHHhhhh-----hhhhHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhhc
Q 023789          173 ELIANWTI-----YANKCTSLSVLGSVIALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFILFLR  232 (277)
Q Consensus       173 ~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vs~~aHlgG~l~G~l~g~~~~~~  232 (277)
                       ++++...     ++.+..+...+-.+..+++...... ...-++.||++|.+.|..++.....|
T Consensus       240 -lfP~~~~~i~f~~~v~~ga~~~~~~i~~~~~a~~~l~-~~~~n~~Ah~~gsl~Gv~va~~~~~r  302 (310)
T KOG2980|consen  240 -LFPKTTLYILFVFPVPAGAGLAFKAIAAYDFAGLILG-WGFFNHAAHLSGSLFGVVVATYLWAR  302 (310)
T ss_pred             -cCcCcceeEEEeecccccchhHHHHHHHhhhcceeec-cccchhHhhhcchHHHHHHHHHHHHH
Confidence             3333221     1122222111112222222222222 45677789999999999999887554

>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins

Probab=98.58  E-value=5.2e-08  Score=73.76  Aligned_cols=80  Identities=23%  Similarity=0.320  Sum_probs=66.6

Q ss_pred             CceeeeecccccCChhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhhc------CCCC---cccccc
Q 023789           89 QKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLHHK------GKKE---IVSVGA  159 (277)
Q Consensus        89 q~wrllTs~F~H~~~~HLl~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~------~~~~---~~~vGa  159 (277)
                      ++|+++|+.|++.++..++.|.+.++..|+.+|+.+|++.++-......+.+|+...+...      .+..   .+.-|.
T Consensus         7 ~pWtl~T~~fve~~i~~~l~~~~~l~~~g~~lE~~WGs~E~lkFi~vv~~~tnl~~~~~~~~~y~i~~~~~~l~~~i~G~   86 (99)
T PF08551_consen    7 YPWTLFTAGFVETNIIGLLFSLLTLFYGGRYLEPIWGSREFLKFILVVNVITNLLTFLLYLLLYAITGNESYLFVPISGF   86 (99)
T ss_pred             ehHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHhcChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCceeEEEecCc
Confidence            7899999999999999999999999999999999999999999999888888877765443      1222   456677


Q ss_pred             HHHHHHHHH
Q 023789          160 SGALFGLLG  168 (277)
Q Consensus       160 SG~i~Gl~g  168 (277)
                      +|.+.|++.
T Consensus        87 ~~~~~g~lV   95 (99)
T PF08551_consen   87 MGVLAGFLV   95 (99)
T ss_pred             HHhHhheEE
Confidence            777777653

Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].

>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins

Probab=98.47  E-value=4.5e-06  Score=71.10  Aligned_cols=99  Identities=22%  Similarity=0.248  Sum_probs=69.1

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHhhhhcccccccCcccccCCCCHHHHHhcCCCchhhhhhcCCce
Q 023789           12 RAWLTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSFQPWKENYLLGPSISTLRDLGGLDRNLIVRKNQKY   91 (277)
Q Consensus        12 ~p~vt~~li~i~v~vf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~L~~~Ga~~~~~i~~~gq~w   91 (277)
                      .|++|...++.++++.++....                 ..+     |.           .+    ..+++.+.+++|+|
T Consensus         1 iPpVTR~~~~~~~~~s~l~~~~-----------------~~~-----~~-----------~l----~~~~~~v~~~~q~W   43 (197)
T PF04511_consen    1 IPPVTRYWLISTVALSLLVSFG-----------------IIS-----PY-----------YL----YFDWELVFKKFQIW   43 (197)
T ss_pred             CChhHHHHHHHHHHHHHHHHCC-----------------CCC-----HH-----------He----eECcHHHhhhcCce
Confidence            3889999999988888876421                 000     00           00    12334677899999


Q ss_pred             eeeecccccCCh-hHHHHHHHHHHHHHHHHHHh-hch--hHHHHHHHHHHHHHHHHHHHh
Q 023789           92 RLLSSMWLHAGI-IHLVVNMTSLMLVSYRLEQE-FGF--ARIAPLYLLSGFGGSLLSCLH  147 (277)
Q Consensus        92 rllTs~F~H~~~-~HLl~N~~~l~~~G~~lE~~-~G~--~~~l~lyl~~gi~g~l~~~l~  147 (277)
                      |++|+.|.-++. .+.++|+..++..++.+|+. +..  ..++...+.+++.-.+.+.+.
T Consensus        44 Rl~Tsff~~g~~~~~~l~~~~~l~~~s~~LE~~~f~~~~ady~~~ll~~~~~i~~~~~~~  103 (197)
T PF04511_consen   44 RLFTSFFYFGPFSLNFLFNLYFLYQYSSSLEEGHFQGRSADYLWFLLFGASLILILSLLI  103 (197)
T ss_pred             eeEEEEEEEcCCCHHHHHHHHHHHHHhhHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999986654 69999999999999999997 332  457666666665555555443

For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.

>KOG0858 consensus Predicted membrane protein [Function unknown]

Probab=97.91  E-value=4.3e-05  Score=65.76  Aligned_cols=98  Identities=18%  Similarity=0.181  Sum_probs=73.9

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHhhhhcccccccCcccccCCCCHHHHHhcCCCchhhhhhcCCc
Q 023789           11 WRAWLTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSFQPWKENYLLGPSISTLRDLGGLDRNLIVRKNQK   90 (277)
Q Consensus        11 ~~p~vt~~li~i~v~vf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~L~~~Ga~~~~~i~~~gq~   90 (277)
                      ..|++|.....+|++.-++...-                 +     +.|..               --.+|+.+.++.|+
T Consensus        11 ~iPpVTR~~~~~~v~tt~~~~l~-----------------l-----IsP~~---------------l~~~p~Lv~kk~Qi   53 (239)
T KOG0858|consen   11 QIPPVTRYYTTACVVTTLLVRLD-----------------L-----ISPFQ---------------LYLNPELVFKKFQI   53 (239)
T ss_pred             cCChHHHHHHHHHHHHHHHHhhc-----------------c-----cCchh---------------eEecHHHHHhHhHH
Confidence            46899999999999988876521                 1     11110               12345688899999


Q ss_pred             eeeeecccccCC-hhHHHHHHHHHHHHHHHHHHhh---chhHHHHHHHHHHHHHHHHHH
Q 023789           91 YRLLSSMWLHAG-IIHLVVNMTSLMLVSYRLEQEF---GFARIAPLYLLSGFGGSLLSC  145 (277)
Q Consensus        91 wrllTs~F~H~~-~~HLl~N~~~l~~~G~~lE~~~---G~~~~l~lyl~~gi~g~l~~~  145 (277)
                      ||++|+.+.-+. -.|.++||+.++--++.+|+-.   -+..|+.+.+.++++-.+.+.
T Consensus        54 WRliTs~lyfg~~gf~fl~n~~FlyrY~~~LE~g~f~~rtadf~~mllf~~~l~~~~~~  112 (239)
T KOG0858|consen   54 WRLITSFLYFGPFGFDFLMNLYFLYRYSSMLEEGSFRGRTADFLYMLLFGAVLLTLTGL  112 (239)
T ss_pred             HHhhhhhheeccccHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence            999999998876 6899999999999999999743   236788888877777655443

>KOG2890 consensus Predicted membrane protein [Function unknown]

Probab=97.35  E-value=0.00062  Score=60.56  Aligned_cols=83  Identities=17%  Similarity=0.245  Sum_probs=64.3

Q ss_pred             CCceeeeecccccCChhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHH----hhc--CCC---Cccccc
Q 023789           88 NQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCL----HHK--GKK---EIVSVG  158 (277)
Q Consensus        88 gq~wrllTs~F~H~~~~HLl~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l----~~~--~~~---~~~~vG  158 (277)
                      ...|+++|+.|+-.+++..+.|.+.+.+-|+.+|+.+|+..++..|.+.-...++....    .+.  .+.   ..+..|
T Consensus        65 ~~~WtliTs~fie~~vw~V~~sv~~L~v~G~~lEp~Wg~~e~lkff~ivn~~~~l~v~v~~~l~Y~it~n~v~L~~~i~G  144 (326)
T KOG2890|consen   65 FFPWTLITSGFIELNVWDVLVSVLTLSVGGKFLEPNWGSLELLKFFAIVNGSTTLVVLVPALLLYMITDNHVYLYIPIHG  144 (326)
T ss_pred             hhhHHHHhcchhhhhHHHHHHHHHheeecceeeccCCCCHHHHHHHHHhhchhHHHHHHHHHHHHHHhcCceEEEEEecc
Confidence            37899999999999999999999999999999999999999988886654333322221    111  111   135789


Q ss_pred             cHHHHHHHHHHH
Q 023789          159 ASGALFGLLGTM  170 (277)
Q Consensus       159 aSG~i~Gl~g~~  170 (277)
                      ..|.+.|++.++
T Consensus       145 ~~gilaGilVa~  156 (326)
T KOG2890|consen  145 TTGILAGILVAW  156 (326)
T ss_pred             chHHHHHHHHHH
Confidence            999999999887

>COG5291 Predicted membrane protein [Function unknown]

Probab=95.83  E-value=0.031  Score=48.51  Aligned_cols=45  Identities=22%  Similarity=0.338  Sum_probs=37.4

Q ss_pred             hhhhcCCceeeeecccccCC-hhHHHHHHHHHHHHHHHHHH-hhchh
Q 023789           83 LIVRKNQKYRLLSSMWLHAG-IIHLVVNMTSLMLVSYRLEQ-EFGFA  127 (277)
Q Consensus        83 ~i~~~gq~wrllTs~F~H~~-~~HLl~N~~~l~~~G~~lE~-~~G~~  127 (277)
                      ..+++-|+||++|+...-++ -+..++|...++--.+.+|+ .+++.
T Consensus        53 L~~k~~qiwRlfTs~~~~~~~~~d~~M~vyf~Y~yS~~LE~g~f~~~   99 (313)
T COG5291          53 LFLKRLQIWRLFTSFLYFGKPTLDMFMHVYFLYRYSRMLEEGCFNTS   99 (313)
T ss_pred             hHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHhccccCcc
Confidence            56688999999998877765 57899999999999999997 45554

>KOG4463 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.60  E-value=0.0064  Score=53.15  Aligned_cols=64  Identities=20%  Similarity=0.268  Sum_probs=52.9

Q ss_pred             hhhhcCCceeeeecccccCChhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHh
Q 023789           83 LIVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLH  147 (277)
Q Consensus        83 ~i~~~gq~wrllTs~F~H~~~~HLl~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l~  147 (277)
                      ......|+||++.+.|...|--.+.+-.+.+|.+ +.+|+.+|+.||..+.+.++..+.++...+
T Consensus        44 ~l~~y~qywrlL~~qF~~~n~~e~~~~l~I~Y~f-R~~ERlLGShky~~fiv~s~~~~~l~~~il  107 (323)
T KOG4463|consen   44 ILEKYFQYWRLLMSQFAFSNTPELMFGLYILYYF-RVFERLLGSHKYSVFIVFSGTVSLLLEVIL  107 (323)
T ss_pred             HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHHHHHhccccceeehhHHHHHHHHHHHHH
Confidence            3445689999999999999988888876666665 899999999999999988888887766544

>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=92.75  E-value=0.16  Score=47.96  Aligned_cols=83  Identities=22%  Similarity=0.340  Sum_probs=56.1

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHhhhhccccc----c-cCcccccCCCCHHHHHhcCCCchhhhhh
Q 023789           12 RAWLTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSF----Q-PWKENYLLGPSISTLRDLGGLDRNLIVR   86 (277)
Q Consensus        12 ~p~vt~~li~i~v~vf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-p~~~~~~~~~~~~~L~~~Ga~~~~~i~~   86 (277)
                      +||.|+.|..+.+.|-++.+......+-+-+..+.. ++.++.-..    . -.++|+++||+.+.|...||.+.+-+.+
T Consensus       199 RP~FTyWlt~Vh~~V~iLsl~~YG~aP~gf~~~et~-~~Vl~n~~v~e~VkYlqQeN~WiGP~~~dLI~LGA~fSPCmrr  277 (652)
T KOG2290|consen  199 RPWFTYWLTFVHSFVTILSLCIYGIAPVGFSQHETV-GDVLDNTLVYERVKYLQQENFWIGPSSADLIHLGAKFSPCMRR  277 (652)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHhcCCcccchhhHhH-HHHHhhhhhhhhhHHHHhcCCccCccHHHHHHhccccChhhhc
Confidence            689999999999888887765544333211111111 111111100    0 1268999999999999999999999999


Q ss_pred             cCCceeeee
Q 023789           87 KNQKYRLLS   95 (277)
Q Consensus        87 ~gq~wrllT   95 (277)
                      +.|.|..+-
T Consensus       278 d~q~~~~I~  286 (652)
T KOG2290|consen  278 DPQVWSAIE  286 (652)
T ss_pred             ChHHHHHHH
Confidence            999998874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	277
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	3e-35
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	9e-28

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A Length = 196

 Score =  124 bits (314), Expect = 3e-35
 Identities = 33/223 (14%), Positives = 78/223 (34%), Gaps = 42/223 (18%)

Query: 12  RAWLTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSFQPWKENYLLGPSIS 71
           +  +T ++  +C+++++                            F+      +  P+  
Sbjct: 8   QGKITLILTALCVLIYIAQQ-----------------------LGFEDDIMYLMHYPA-- 42

Query: 72  TLRDLGGLDRNLIVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAP 131
                         + ++ +R +S   +H   +H++ N++   +    +E+ FG  ++  
Sbjct: 43  -----------YEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLM 91

Query: 132 LYLLSGFGGSLLSCLHHKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVL 191
           LY+++      +              G SG ++ +LG +      N  ++       ++L
Sbjct: 92  LYVVASAITGYVQNYVS----GPAFFGLSGVVYAVLGYVFIRDKLNHHLFDLPEGFFTML 147

Query: 192 GSVIALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFILFLRPQ 234
              IAL            + N AHI G   G++ GFI     +
Sbjct: 148 LVGIALGFISPLFGV--EMGNAAHISGLIVGLIWGFIDSKLRK 188

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A* Length = 181

 Score =  104 bits (261), Expect = 9e-28
 Identities = 29/218 (13%), Positives = 67/218 (30%), Gaps = 42/218 (19%)

Query: 12  RAWLTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSFQPWKENYLLGPSIS 71
              +T V+ + C+++F+                                     +     
Sbjct: 3   AGPVTWVMMIACVVVFIAM----------------------------------QILGDQE 28

Query: 72  TLRDLGGLDRNLIVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAP 131
            +  L          K + +R  +   +H  ++H++ N+     +   +E+  G  ++  
Sbjct: 29  VMLWLAWP--FDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIV 86

Query: 132 LYLLSGFGGSLLSCLHHKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVL 191
           + L+S      +              G SG ++ L+G +      +          L + 
Sbjct: 87  ITLISALLSGYVQQKFS----GPWFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIF 142

Query: 192 GSVIALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFIL 229
             +  +   F        + N AHI G A G+ + F+ 
Sbjct: 143 ALIWIVAGWFDLF--GMSMANGAHIAGLAVGLAMAFVD 178

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	277
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	99.98
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	99.97

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A

Probab=99.98  E-value=4.9e-33  Score=235.62  Aligned_cols=185  Identities=18%  Similarity=0.269  Sum_probs=133.0

Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHhhhhcccccccCcccccCCCCHHHHHhcCCCchhhhhhc
Q 023789            8 PEQWRAWLTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSFQPWKENYLLGPSISTLRDLGGLDRNLIVRK   87 (277)
Q Consensus         8 ~~~~~p~vt~~li~i~v~vf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~L~~~Ga~~~~~i~~~   87 (277)
                      -+.++|++|..++++|+++|+++.....             .+..+.+++                      .|. .+.+
T Consensus         4 ~~~~~~pvt~~li~~~v~vfll~~~~~~-------------~~~~~~~~~----------------------~p~-~~~~   47 (196)
T 2nr9_A            4 FLAQQGKITLILTALCVLIYIAQQLGFE-------------DDIMYLMHY----------------------PAY-EEQD   47 (196)
T ss_dssp             CCTTSCHHHHHHHHHHHHHHHHHHTTCH-------------HHHHHHHSC----------------------CCS-GGGG
T ss_pred             cccccccHHHHHHHHHHHHHHHHHHcCc-------------HHHHHhhcC----------------------CHh-hccc
Confidence            3456678999999999999998764210             112233333                      232 2368


Q ss_pred             CCceeeeecccccCChhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhhcCCCCccccccHHHHHHHH
Q 023789           88 NQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLHHKGKKEIVSVGASGALFGLL  167 (277)
Q Consensus        88 gq~wrllTs~F~H~~~~HLl~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~~~~~~~~vGaSG~i~Gl~  167 (277)
                      +||||++|++|+|.|+.|+++||+.++.+|..+|+.+|+++++.+|+.+++.|++.++++.   ++ .++||||++||++
T Consensus        48 ~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G~~lE~~~G~~~~l~~yl~~~~~~~l~~~~~~---~~-~~vGaSGai~gl~  123 (196)
T 2nr9_A           48 SEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVS---GP-AFFGLSGVVYAVL  123 (196)
T ss_dssp             GCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH---CS-CCCCSHHHHHHHH
T ss_pred             CCcHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHhc---CC-CeeeHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999998884   33 3999999999999


Q ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhhccc
Q 023789          168 GTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFILFLRPQ  234 (277)
Q Consensus       168 g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vs~~aHlgG~l~G~l~g~~~~~~~~  234 (277)
                      ++.+.....+......+.+......+++..++. ... ..+++|+.||++|+++|++++..+.++++
T Consensus       124 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~v~~~aHlgG~l~G~l~~~~~~~~~~  188 (196)
T 2nr9_A          124 GYVFIRDKLNHHLFDLPEGFFTMLLVGIALGFI-SPL-FGVEMGNAAHISGLIVGLIWGFIDSKLRK  188 (196)
T ss_dssp             HHHHHHHHSSTTSCCCCCSSTTTTTTTTTHHHH-SCS-SCCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcchhhcchHHHHHHHHHHHHHHHH-Hhc-cCCCccHHHHHHHHHHHHHHHHHHHhccc
Confidence            987543211111111111111111122222322 110 24579999999999999999998876553

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*

Probab=99.97  E-value=4.6e-31  Score=220.82  Aligned_cols=177  Identities=16%  Similarity=0.217  Sum_probs=130.8

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHhhhhcccccccCcccccCCCCHHHHHhcCCCchhhhhhcCCc
Q 023789           11 WRAWLTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSFQPWKENYLLGPSISTLRDLGGLDRNLIVRKNQK   90 (277)
Q Consensus        11 ~~p~vt~~li~i~v~vf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~L~~~Ga~~~~~i~~~gq~   90 (277)
                      |.|++|..++++|+++|+++.....             .+..+.+++.|                       ....++||
T Consensus         2 ~~~pvt~~li~~~v~vf~~~~~~~~-------------~~~~~~~~~~p-----------------------~~~~~~~~   45 (181)
T 2xov_A            2 RAGPVTWVMMIACVVVFIAMQILGD-------------QEVMLWLAWPF-----------------------DPTLKFEF   45 (181)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHCH-------------HHHHHHHSSCC-----------------------SGGGTTCT
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHhCc-------------HHHHHhhcCCh-----------------------hhccCCCC
Confidence            5578999999999999998875321             11223333322                       23468999


Q ss_pred             eeeeecccccCChhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhhcCCCCccccccHHHHHHHHHHH
Q 023789           91 YRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLHHKGKKEIVSVGASGALFGLLGTM  170 (277)
Q Consensus        91 wrllTs~F~H~~~~HLl~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~~~~~~~~vGaSG~i~Gl~g~~  170 (277)
                      ||++|++|+|.|+.|+++||+.++.+|+.+|+.+|++|++.+|+.+++.+++.+.++.   ++ .++||||+++|++++.
T Consensus        46 wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~G~~~fl~~yl~~~i~~~l~~~~~~---~~-~~vGaSGai~gl~g~~  121 (181)
T 2xov_A           46 WRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFS---GP-WFGGLSGVVYALMGYV  121 (181)
T ss_dssp             THHHHGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH---CS-CCCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc---CC-CceeHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998884   33 3899999999999987


Q ss_pred             HHHHHHhhhh-hhhhHHHHHHHHHHHHHHHHHHhcC-CCCchhHHHHHHHHHHHHHHHHHHhh
Q 023789          171 LSELIANWTI-YANKCTSLSVLGSVIALNLAFGFIP-GVDGVDNLAHIGGFASGVLLGFILFL  231 (277)
Q Consensus       171 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~vs~~aHlgG~l~G~l~g~~~~~  231 (277)
                      +.....+.+. ...+.+.......++..    ++.. ..+++|+.||++|+++|++++..+.|
T Consensus       122 ~~~~~~~p~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~  180 (181)
T 2xov_A          122 WLRGERDPQSGIYLQRGLIIFALIWIVA----GWFDLFGMSMANGAHIAGLAVGLAMAFVDSL  180 (181)
T ss_dssp             HHHHHHCGGGSCCCCHHHHHHHHHHHHH----HHTTSSCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhCcCceeeeHHHHHHHHHHHHHH----HHHHhccccchHHHHHHHHHHHHHHHHHHhc
Confidence            5422111111 11112222222233332    3221 13579999999999999999987765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	277
d2nr9a1	189	f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilu	4e-14
d3b45a1	180	f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId:	9e-14

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]} Length = 189

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

 Score = 66.7 bits (162), Expect = 4e-14
 Identities = 29/152 (19%), Positives = 61/152 (40%), Gaps = 6/152 (3%)

Query: 83  LIVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSL 142
              + ++ +R +S   +H   +H++ N++   +    +E+ FG  ++  LY+++      
Sbjct: 40  YEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGY 99

Query: 143 LSCLHHKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFG 202
           +              G SG ++ +LG +      N  ++       ++L   IAL     
Sbjct: 100 VQNYVS----GPAFFGLSGVVYAVLGYVFIRDKLNHHLFDLPEGFFTMLLVGIALGFISP 155

Query: 203 FIPGVDGVDNLAHIGGFASGVLLGFILFLRPQ 234
                  + N AHI G   G++ GFI     +
Sbjct: 156 LFG--VEMGNAAHISGLIVGLIWGFIDSKLRK 185

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]} Length = 180

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

 Score = 65.9 bits (160), Expect = 9e-14
 Identities = 24/144 (16%), Positives = 53/144 (36%), Gaps = 6/144 (4%)

Query: 85  VRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLS 144
             K + +R  +   +H  ++H++ N+     +   +E+  G  ++  + L+S      + 
Sbjct: 40  TLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQ 99

Query: 145 CLHHKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFI 204
                        G SG ++ L+G +      +          L +   +  +   F   
Sbjct: 100 QKFSGP----WFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDLF 155

Query: 205 PGVDGVDNLAHIGGFASGVLLGFI 228
                + N AHI G A G+ + F+
Sbjct: 156 --GMSMANGAHIAGLAVGLAMAFV 177

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	277
d2nr9a1	189	GlpG homolog HI0618 {Haemophilus influenzae [TaxId	99.97
d3b45a1	180	GlpG {Escherichia coli [TaxId: 562]}	99.97

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

Probab=99.97  E-value=3.6e-31  Score=220.87  Aligned_cols=180  Identities=18%  Similarity=0.258  Sum_probs=133.1

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHhhhhcccccccCcccccCCCCHHHHHhcCCCchhhhhhcCCc
Q 023789           11 WRAWLTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSFQPWKENYLLGPSISTLRDLGGLDRNLIVRKNQK   90 (277)
Q Consensus        11 ~~p~vt~~li~i~v~vf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~L~~~Ga~~~~~i~~~gq~   90 (277)
                      +.+++|.+++++|+++|+++....+             ++ .+.+.                      .+++....++||
T Consensus         4 ~~~pvt~~i~~~~~~v~~~~~~~~~-------------~~-~~~~~----------------------~~~~~~~~~~~~   47 (189)
T d2nr9a1           4 QQGKITLILTALCVLIYIAQQLGFE-------------DD-IMYLM----------------------HYPAYEEQDSEV   47 (189)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHTTCH-------------HH-HHHHH----------------------SCCCSGGGGGCT
T ss_pred             CcchHHHHHHHHHHHHHHHHHHhcc-------------HH-HHHHH----------------------HccccccccCch
Confidence            4567999999999999998764211             11 11111                      122245678999


Q ss_pred             eeeeecccccCChhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhhcCCCCccccccHHHHHHHHHHH
Q 023789           91 YRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLHHKGKKEIVSVGASGALFGLLGTM  170 (277)
Q Consensus        91 wrllTs~F~H~~~~HLl~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~~~~~~~~vGaSG~i~Gl~g~~  170 (277)
                      ||++|++|+|.|+.|+++||+.++.+|..+|+.+|+++++.+|+.+++.|++.+.+..    .++.+|+||+++|++++.
T Consensus        48 wrl~T~~f~H~~~~Hl~~N~~~l~~~g~~~E~~~G~~~~~~~~~~~~~~~~l~~~~~~----~~~~vGaSG~v~gl~~~~  123 (189)
T d2nr9a1          48 WRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVS----GPAFFGLSGVVYAVLGYV  123 (189)
T ss_dssp             THHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH----CSCCCCSHHHHHHHHHHH
T ss_pred             HHhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcC----CCCcccchHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999988873    357899999999999987


Q ss_pred             HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhhc
Q 023789          171 LSELIANWTIYANKCTSLSVLGSVIALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFILFLR  232 (277)
Q Consensus       171 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vs~~aHlgG~l~G~l~g~~~~~~  232 (277)
                      ......++.....+......+...+.+......  ..+++|+.||++|+++|+++|+...++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~aHl~G~l~G~~~g~~~~~~  183 (189)
T d2nr9a1         124 FIRDKLNHHLFDLPEGFFTMLLVGIALGFISPL--FGVEMGNAAHISGLIVGLIWGFIDSKL  183 (189)
T ss_dssp             HHHHHSSTTSCCCCCSSTTTTTTTTTHHHHSCS--SCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHhccHHHHHHHHHHHHHHHHHHhc--cCCChHHHHHHHHHHHHHHHHHHHHcc
Confidence            655444433322222222222222222222222  256799999999999999999987653

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.9e-29  Score=208.61  Aligned_cols=176  Identities=15%  Similarity=0.188  Sum_probs=130.1

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHhhhhcccccccCcccccCCCCHHHHHhcCCCchhhhhhcCC
Q 023789           10 QWRAWLTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSFQPWKENYLLGPSISTLRDLGGLDRNLIVRKNQ   89 (277)
Q Consensus        10 ~~~p~vt~~li~i~v~vf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~L~~~Ga~~~~~i~~~gq   89 (277)
                      ||.+|+|+.++++|+++|+......+             .+.                      .++.+. +.....++|
T Consensus         1 ~r~~pvT~~li~i~~~vf~~~~~~~~-------------~~~----------------------~~~~~~-~~~~~~~g~   44 (180)
T d3b45a1           1 ERAGPVTWVMMIACVVVFIAMQILGD-------------QEV----------------------MLWLAW-PFDPTLKFE   44 (180)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHCH-------------HHH----------------------HHHHSS-CCSGGGTTC
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHhCc-------------HHH----------------------HHHHcC-CCcccccCc
Confidence            57789999999999999998764321             111                      111111 124456899


Q ss_pred             ceeeeecccccCChhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhhcCCCCccccccHHHHHHHHHH
Q 023789           90 KYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLHHKGKKEIVSVGASGALFGLLGT  169 (277)
Q Consensus        90 ~wrllTs~F~H~~~~HLl~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~~~~~~~~vGaSG~i~Gl~g~  169 (277)
                      +||++|++|+|.|+.|+++||+.++.+|+.+|+.+|+++++.+|+.+++.|++.+.+++    +....|+||+++|++++
T Consensus        45 ~wrl~T~~f~H~~~~Hl~~N~~~l~~~G~~lE~~~G~~~~~~~~~~~~~~g~l~~~~~~----~~~~~G~sg~i~~l~~~  120 (180)
T d3b45a1          45 FWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFS----GPWFGGLSGVVYALMGY  120 (180)
T ss_dssp             GGGGTGGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH----CSCCCCSHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhccchhheeeeeHHHHHHHHHHHHHh----ccccccccchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999884    35689999999999998


Q ss_pred             HHHHHHHhhhhhhh-hHHHHHHHHHHHHHHHHHHhcC-CCCchhHHHHHHHHHHHHHHHHHH
Q 023789          170 MLSELIANWTIYAN-KCTSLSVLGSVIALNLAFGFIP-GVDGVDNLAHIGGFASGVLLGFIL  229 (277)
Q Consensus       170 ~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~-~~~~vs~~aHlgG~l~G~l~g~~~  229 (277)
                      .......+...... +.........+    +.....+ ..+++++.||++|+++|+++++..
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~aHlgG~l~G~~~~~~~  178 (180)
T d3b45a1         121 VWLRGERDPQSGIYLQRGLIIFALIW----IVAGWFDLFGMSMANGAHIAGLAVGLAMAFVD  178 (180)
T ss_dssp             HHHHHHHCGGGSCCCCHHHHHHHHHH----HHHHHTTSSCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhcchhHHhhHHHHHHHHHHH----HHHHHHHhccCchHHHHHHHHHHHHHHHHHHH
Confidence            86554333222111 11111111111    1122221 256799999999999999998864