Citrus Sinensis ID: 023793

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------
Protein Sequence
MSWNSNYFPSSQEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRLFPTTMAM
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHEHHcccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHccHHHcccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHcc
Coil and Loop (DISEMBL)
mswnsnyfpssqegaasvytmadgslgdmfggflysaGQQANEAVLGQLSALSFTSLAVIFGAglvtslspctlsvlpltlgyigafgsgksraQIIGDSIAFSLGLATTLALLGvgasfagkaygqigtglplAASGLAIVMGLNLLEIIELqlpsffdnfdpraaaanfpSSVQAYLAGLTFAlaaspcstPVLATLLGYvatskdpliggtLLLSYTTGYVAPLLLAASFAGALQSLLSFRkfsswinpmsgalllggglytfldrlfpttmam
Flexible Loop (DISEMBL)
MSWNSNYFPSSQEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRLFPTTMAM
Low Complexity Region (SEG)
MSWNSNYFPSSQEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSlglattlallgVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRLFPTTMAM
Disordered region (IsUnstruct)
*****************VYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRLFP*****
Disordered Region (DISOPRED)
*******************************************AVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSF****************VQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRLFPTTMAM
Disordered Region (DISEMBL)
************EGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRLFPTTMAM
Disordered Region (DISPRO)
**W*SNYFPSSQEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRLFPTTMA*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSWNSNYFPSSQEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRLFPTTMAM
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	277	2.2.26 [Sep-21-2011]
Q2QY07	362	Cytochrome c-type biogene	yes	no	0.927	0.709	0.833	1e-120
Q2RAR6	367	Cytochrome c-type biogene	yes	no	0.927	0.700	0.833	1e-119
Q9M5P3	354	Cytochrome c-type biogene	yes	no	0.956	0.748	0.860	1e-112
P51364	240	Putative cytochrome c-typ	N/A	no	0.815	0.941	0.310	1e-27
Q1XDC3	224	Putative cytochrome c-typ	N/A	no	0.729	0.901	0.317	1e-25
Q9JYM0	601	Thiol:disulfide interchan	yes	no	0.898	0.414	0.278	2e-11
Q9JTL9	601	Thiol:disulfide interchan	yes	no	0.909	0.419	0.271	7e-11
Q87KW0	613	Thiol:disulfide interchan	yes	no	0.711	0.321	0.306	3e-09
Q7MGV6	598	Thiol:disulfide interchan	yes	no	0.711	0.329	0.306	3e-09
P44202	213	Putative cytochrome c-typ	yes	no	0.689	0.896	0.256	3e-09

>sp|Q2QY07|CCDA2_ORYSJ Cytochrome c-type biogenesis ccda-like chloroplastic protein 2 OS=Oryza sativa subsp. japonica GN=CCDA2 PE=2 SV=1

 Score =  430 bits (1105), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 215/258 (83%), Positives = 243/258 (94%), Gaps = 1/258 (0%)

Query: 21  MADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLT 80
           +AD S+GD FG  LYSAGQQANEAV  QLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLT
Sbjct: 105 LADLSIGDWFGNLLYSAGQQANEAVQDQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLT 164

Query: 81  LGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLA 140
           LGYIGAFGSGK R++++G+S+AFSLGLATTLA+LGV ASFAGKAYGQ+G GLP+AASGLA
Sbjct: 165 LGYIGAFGSGKDRSEVVGNSVAFSLGLATTLAILGVAASFAGKAYGQVGQGLPVAASGLA 224

Query: 141 IVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLL 200
           ++MGLNLLE+IELQLPSFF ++DPRAAAAN PSSVQAYLAGLTFALAASPCSTPVLATLL
Sbjct: 225 VIMGLNLLEVIELQLPSFFSDYDPRAAAANLPSSVQAYLAGLTFALAASPCSTPVLATLL 284

Query: 201 GYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLG 260
           GYVATS+DP++GG+LLL+YTTGYVAPLL+AASFAGALQSLLSFR++S+WINP+SGA LLG
Sbjct: 285 GYVATSRDPIVGGSLLLTYTTGYVAPLLIAASFAGALQSLLSFRRYSAWINPISGAFLLG 344

Query: 261 GGLYTFLDRLFP-TTMAM 277
           GG+YT LDRLFP T+M M
Sbjct: 345 GGVYTLLDRLFPATSMVM 362

Probably involved in the transfer of reducing equivalents from stroma to thylakoid lumen and required for the biogenesis of the plastid cytochrome b6f complex.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2RAR6|CCDA1_ORYSJ Cytochrome c-type biogenesis ccda-like chloroplastic protein 1 OS=Oryza sativa subsp. japonica GN=CCDA1 PE=2 SV=1

 Score =  429 bits (1102), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 215/258 (83%), Positives = 243/258 (94%), Gaps = 1/258 (0%)

Query: 21  MADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLT 80
           +AD S+GD FG  LYSAGQQANEAV  QLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLT
Sbjct: 110 LADLSVGDWFGNLLYSAGQQANEAVQDQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLT 169

Query: 81  LGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLA 140
           LGYIGAFGSGK R++++G+S+AFSLGLATTLA+LGV ASFAGKAYGQ+G GLP+AASGLA
Sbjct: 170 LGYIGAFGSGKDRSEVVGNSVAFSLGLATTLAILGVAASFAGKAYGQVGQGLPVAASGLA 229

Query: 141 IVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLL 200
           ++MGLNLLE+IELQLPSFF ++DPRAAAAN PSSVQAYLAGLTFALAASPCSTPVLATLL
Sbjct: 230 VIMGLNLLEVIELQLPSFFSDYDPRAAAANLPSSVQAYLAGLTFALAASPCSTPVLATLL 289

Query: 201 GYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLG 260
           GYVATS+DP++GG+LLL+YTTGYVAPLL+AASFAGALQSLLSFR++S+WINP+SGA LLG
Sbjct: 290 GYVATSRDPIVGGSLLLTYTTGYVAPLLIAASFAGALQSLLSFRRYSAWINPISGAFLLG 349

Query: 261 GGLYTFLDRLFP-TTMAM 277
           GG+YT LDRLFP T+M M
Sbjct: 350 GGVYTLLDRLFPATSMVM 367

Probably involved in the transfer of reducing equivalents from stroma to thylakoid lumen and required for the biogenesis of the plastid cytochrome b6f complex.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9M5P3|CCDA_ARATH Cytochrome c-type biogenesis ccda-like chloroplastic protein OS=Arabidopsis thaliana GN=CCDA PE=1 SV=1

 Score =  406 bits (1043), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 229/266 (86%), Positives = 248/266 (93%), Gaps = 1/266 (0%)

Query: 13  EGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPC 72
           + A S+Y +A+GSLGD  G FLYSA QQANEAV  QLSALS TSLAVIFGAGLVTSLSPC
Sbjct: 89  DQATSIYILAEGSLGDSVGNFLYSANQQANEAVQDQLSALSVTSLAVIFGAGLVTSLSPC 148

Query: 73  TLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGL 132
           TLSVLPLTLGYIGAFGSGKSR Q+IGD++AF+LGLATTLALLG+ ASFAGKAYGQIG GL
Sbjct: 149 TLSVLPLTLGYIGAFGSGKSRGQVIGDTVAFALGLATTLALLGIVASFAGKAYGQIGQGL 208

Query: 133 PLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCS 192
           P+AASGLAIVMGLNLLEIIELQLPSFF+NFDPRAAAANFPSSVQAYLAGLTFALAASPCS
Sbjct: 209 PVAASGLAIVMGLNLLEIIELQLPSFFNNFDPRAAAANFPSSVQAYLAGLTFALAASPCS 268

Query: 193 TPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINP 252
           TPVLATLLGYVATS+DP+IGG+LLL+YTTGYVAPL++AASFAGALQSLLS RK S+WINP
Sbjct: 269 TPVLATLLGYVATSRDPVIGGSLLLTYTTGYVAPLIVAASFAGALQSLLSLRKVSAWINP 328

Query: 253 MSGALLLGGGLYTFLDRLFP-TTMAM 277
           +SGALLLGGGLYTFLDRLFP  TM M
Sbjct: 329 ISGALLLGGGLYTFLDRLFPAATMVM 354

Required for the transfer of reducing equivalents from stroma to thylakoid lumen. Involved in the biogenesis of the plastid cytochrome b6f complex by probably transferring reducing equivalents from stromal m-type thioredoxin (Trx-m) to the lumenal thioredoxin HCF164.

Arabidopsis thaliana (taxid: 3702)

>sp|P51364|YCXN_PORPU Putative cytochrome c-type biogenesis protein dbsD-like OS=Porphyra purpurea PE=3 SV=1

 Score =  123 bits (309), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 125/232 (53%), Gaps = 6/232 (2%)

Query: 34  LYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSR 93
           LY++    N   L QL+ ++  S + +F +GL TS SPC +S+LP+ + YI   G   S+
Sbjct: 7   LYNSQHLINNITLYQLNHINIASFSFVFFSGLFTSFSPCLISILPICIMYISGEGQKLSQ 66

Query: 94  AQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIEL 153
              + +   F LG  ++   LG+ A+   K Y Q+  G+P+ ++ + I MG +LL I+ L
Sbjct: 67  IDKLKNLFFFCLGAISSFTTLGLIATLLAKTYSQLFNGIPVISALVIIYMGFSLLNIVPL 126

Query: 154 QLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGG 213
                 +N + R    N   +++ YL+G+   LA S CSTP+  TLL +V ++ +  IG 
Sbjct: 127 ST----NNLNTRINNTN--QNIKMYLSGVGIGLAISSCSTPIFVTLLIWVTSNHNLFIGL 180

Query: 214 TLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYT 265
             +L Y+ GY+ P+++ + F+    +  S    ++   P SG +LL  G ++
Sbjct: 181 IFILIYSIGYIFPIIIGSLFSSRFLTTASSPFLNNLWAPFSGTILLSAGTFS 232

Could be involved in cytochrome c synthesis.

Porphyra purpurea (taxid: 2787)

>sp|Q1XDC3|YCXN_PORYE Putative cytochrome c-type biogenesis protein dbsD-like OS=Porphyra yezoensis PE=3 SV=1

 Score =  117 bits (292), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 109/208 (52%), Gaps = 6/208 (2%)

Query: 33  FLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKS 92
           F+Y++    N   L QL+ L+ TS + IF +GL TSLSPC +S+LP+ + YI       +
Sbjct: 6   FVYNSQHFVNNITLYQLNHLNSTSFSFIFLSGLFTSLSPCIISILPVCILYIAGETQKLN 65

Query: 93  RAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIE 152
                 +   F LG  ++   LG+ A+   K Y Q   G+P  ++ + I MGLNLL I+ 
Sbjct: 66  PINKTKNLFLFCLGTISSFITLGILATLITKTYSQFFNGIPTISAVVIIYMGLNLLNIVH 125

Query: 153 LQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIG 212
           +  P F           N   + + YL+G+   +A S CSTP+  TLL ++ +++    G
Sbjct: 126 INSPKF------NGLVTNNNYNFKMYLSGVGIGIAISSCSTPIFVTLLVWINSTQKIFTG 179

Query: 213 GTLLLSYTTGYVAPLLLAASFAGALQSL 240
              +L Y+ GY+ P+++ + F+ +   L
Sbjct: 180 LIFILIYSIGYIFPIIIGSIFSTSFLKL 207

Could be involved in cytochrome c synthesis.

Porphyra yezoensis (taxid: 2788)

>sp|Q9JYM0|DSBD_NEIMB Thiol:disulfide interchange protein DsbD OS=Neisseria meningitidis serogroup B (strain MC58) GN=dsbD PE=1 SV=1

 Score = 69.7 bits (169), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 123/273 (45%), Gaps = 24/273 (8%)

Query: 4   NSNYFPSSQEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFT-SLAVIFG 62
           N  Y P + E A++       S  +  G      G +  ++   +LS  +   +L   F 
Sbjct: 139 NGTYHPQTDEPASAKDRFLQPSSQNGSGALPPPKGDEGGDSRF-KLSWDTLNANLLAFFL 197

Query: 63  AGLVTSLSPCTLSVLPLTLG-YIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFA 121
           AGL  S + C   +LP+     +G   +GK+RA ++  S+ +  GLA T  L+G+ A   
Sbjct: 198 AGLGLSFTACMYPLLPIVSSIVVGDKKAGKARAFVL--SVVYVQGLALTYTLVGIVAGLT 255

Query: 122 G---KAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLP----SFFDNFDPRAAAANFPSS 174
           G     + Q    + LAAS L +V+ L++  +  +QLP    S+F N   R +       
Sbjct: 256 GALLTVWLQ-QAWVVLAASALMVVLALSMFGLFNIQLPNAVQSYFQNQSSRLSGGKI--- 311

Query: 175 VQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFA 234
           V  ++ G+  AL   PC  P LA  LGY+  + D ++GG  L +   G   PL+   +F 
Sbjct: 312 VSVFIMGILSALIVGPCVAPPLAFALGYIGQTGDAVLGGLALYTLALGTGVPLIAIGTFG 371

Query: 235 GALQSLLSFRKFSSWINPMS---GALLLGGGLY 264
           G +       K   W+N +    G +LL   +Y
Sbjct: 372 GHI-----LPKAGDWMNAVKYAFGFILLAVAVY 399

Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps.

Neisseria meningitidis serogroup B (strain MC58) (taxid: 122586)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9JTL9|DSBD_NEIMA Thiol:disulfide interchange protein DsbD OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=dsbD PE=3 SV=2

 Score = 68.2 bits (165), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 125/276 (45%), Gaps = 24/276 (8%)

Query: 1   MSWNSNYFPSSQEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFT-SLAV 59
           +S N  Y P + E A++       S  +  G      G +  ++   +LS  +   +L  
Sbjct: 136 ISGNGTYHPQTDEPASAKDRFLQPSSQNGSGALPPPKGDEGGDSRF-KLSWDTLNANLLA 194

Query: 60  IFGAGLVTSLSPCTLSVLPLTLG-YIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGA 118
            F AGL  S + C   +LP+     +G   +GK+RA ++  S+ +  GL+ T  L+G+ A
Sbjct: 195 FFLAGLGLSFTACMYPLLPIVSSIVVGDKKAGKARAFVL--SVVYVQGLSLTYTLVGIVA 252

Query: 119 SFAG---KAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLP----SFFDNFDPRAAAANF 171
              G     + Q    + LAAS L +V+ L++  +  +QLP    S+F N   R +    
Sbjct: 253 GLTGALLTVWLQ-QAWVVLAASALMVVLALSMFGLFNIQLPNAVQSYFQNQSSRLSGGKI 311

Query: 172 PSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAA 231
              V  ++ G+  AL   PC  P LA  LGY+  + D ++GG  L +   G   PL+   
Sbjct: 312 ---VSVFIMGILSALIVGPCVAPPLAFALGYIGQTGDAVLGGLALYTLALGTGVPLIAIG 368

Query: 232 SFAGALQSLLSFRKFSSWINPMS---GALLLGGGLY 264
           +F G +       +   W+N +    G +LL   +Y
Sbjct: 369 TFGGHI-----LPRAGDWMNAVKYAFGFILLAVAVY 399

Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps.

Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) (taxid: 122587)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|Q87KW0|DSBD_VIBPA Thiol:disulfide interchange protein DsbD OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=dsbD PE=3 SV=1

 Score = 62.8 bits (151), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 104/222 (46%), Gaps = 25/222 (11%)

Query: 62  GAGLVTSLSPCTLSVLPLTLGYIGAFGSGK-SRAQIIGDSIAFSLGLATTLALLGVGASF 120
           G GL  + +PC L + P+    +   GSGK S+ + +G S+ +  G+A T  LLG+  + 
Sbjct: 221 GVGL--AFTPCVLPMYPILTSIV--LGSGKLSQRRALGLSLVYVQGMALTYTLLGLVVAS 276

Query: 121 AGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPS----FFDNFDPRAAAANFPS 173
           AG  + Q     P    GL+I+   + L++  +  LQLPS    + +N   +       S
Sbjct: 277 AGMQF-QAAMQHPYVLIGLSILFVTLALSMFGVYTLQLPSSVQTWLNNLSNKQQGG---S 332

Query: 174 SVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASF 233
           S   +  G    L  SPC+T  L+  L YVA S D L GG  L +   G   PL+L A F
Sbjct: 333 SAGVFAMGAISGLVCSPCTTAPLSGALLYVAQSGDLLTGGIALYALAMGMGIPLILVAVF 392

Query: 234 AGALQSLLSFRKFSSWINPMS---GALLLGGGLYTFLDRLFP 272
              L       K   W++ +    G +LL   ++  L+R+ P
Sbjct: 393 GNKL-----LPKAGGWMDRVKTLFGFILLAAPIF-LLERILP 428

Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps.

Vibrio parahaemolyticus (taxid: 670)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|Q7MGV6|DSBD_VIBVY Thiol:disulfide interchange protein DsbD OS=Vibrio vulnificus (strain YJ016) GN=dsbD PE=3 SV=1

 Score = 62.4 bits (150), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 104/222 (46%), Gaps = 25/222 (11%)

Query: 62  GAGLVTSLSPCTLSVLPLTLGYIGAFGSGK-SRAQIIGDSIAFSLGLATTLALLGVGASF 120
           G GL  + +PC L + P+    +   GSGK S+ + +G S+ +  G+A T  LLG+  + 
Sbjct: 204 GVGL--AFTPCVLPMYPILTSIV--LGSGKLSQRRALGLSLVYVQGMALTYTLLGLVVAS 259

Query: 121 AGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPS----FFDNFDPRAAAANFPS 173
           AG  + Q     P    GL+I+   + L++  +  LQLPS    + +N   +       S
Sbjct: 260 AGLQF-QAAMQHPYVLIGLSILFVTLALSMFGVYTLQLPSSVQTWLNNLSNKQQGG---S 315

Query: 174 SVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASF 233
           S   +  G    L  SPC+T  L+  L YVA S D L GG  L +   G   PL+L A F
Sbjct: 316 STGVFAMGAISGLVCSPCTTAPLSGALLYVAQSGDLLTGGVALYALAMGMGIPLILVAVF 375

Query: 234 AGALQSLLSFRKFSSWINPMS---GALLLGGGLYTFLDRLFP 272
              L       K   W++ +    G +LL   ++  L+R+ P
Sbjct: 376 GNKL-----LPKAGGWMDHVKTLFGFVLLAAPIF-LLERILP 411

Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps.

Vibrio vulnificus (strain YJ016) (taxid: 196600)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|P44202|Y1454_HAEIN Putative cytochrome c-type biogenesis protein HI_1454 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1454 PE=3 SV=1

 Score = 62.4 bits (150), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 97/207 (46%), Gaps = 16/207 (7%)

Query: 57  LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGV 116
           +  +F AGL + LSPC   ++P+   Y G    G  +     ++  F LGL+ T   LG 
Sbjct: 8   IGTVFLAGLASFLSPCIFPIIPI---YFGILSKGGKKVL---NTFLFILGLSLTFVSLGF 61

Query: 117 GASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQ 176
              F G       T   + A  + I++G++ L I ++ L       + + +  +  ++++
Sbjct: 62  SFGFLGNILFSNTT--RIIAGVIVIILGIHQLGIFKIGLLERTKLVEIKTSGKS--TALE 117

Query: 177 AYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGA 236
           A++ GLTF+L  +PC  P+LA++L         L G +++  Y  G   P +L + F+ +
Sbjct: 118 AFVLGLTFSLGWTPCIGPILASVLALSGDEGSALYGASMMFVYVLGLATPFVLFSFFSDS 177

Query: 237 LQSLLSFRKFSSWINPMSGALLLGGGL 263
           L       K +  +N       +GGG+
Sbjct: 178 L------LKRAKGLNKHLDKFKIGGGI 198

Could be involved in cytochrome c synthesis.

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
225461322	358	PREDICTED: cytochrome c-type biogenesis	0.956	0.740	0.890	1e-128
356517207	344	PREDICTED: cytochrome c-type biogenesis	0.956	0.770	0.898	1e-123
358249182	344	cytochrome c-type biogenesis ccda-like c	0.956	0.770	0.894	1e-123
224122910	265	predicted protein [Populus trichocarpa]	0.956	1.0	0.901	1e-122
255646784	340	unknown [Glycine max]	0.956	0.779	0.894	1e-122
255580440	350	Thiol:disulfide interchange protein dsbD	0.960	0.76	0.868	1e-120
27464259	345	chloroplast biogenesis protein [Lotus ja	0.956	0.768	0.879	1e-119
122206055	362	RecName: Full=Cytochrome c-type biogenes	0.927	0.709	0.833	1e-118
122208139	367	RecName: Full=Cytochrome c-type biogenes	0.927	0.700	0.833	1e-118
449463144	362	PREDICTED: cytochrome c-type biogenesis	0.956	0.732	0.898	1e-118

>gi|225461322|ref|XP_002284546.1| PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein 2 [Vitis vinifera] gi|302143076|emb|CBI20371.3| unnamed protein product [Vitis vinifera]

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 236/265 (89%), Positives = 253/265 (95%)

Query: 13  EGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPC 72
           EGA SVYT+ADGS+GD FGGFLYSAGQQAN AV  QLSALSFTSLAVIFGAGLVTSLSPC
Sbjct: 94  EGATSVYTLADGSIGDWFGGFLYSAGQQANAAVQDQLSALSFTSLAVIFGAGLVTSLSPC 153

Query: 73  TLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGL 132
           TLSVLPLTLGYIGAFGSGK RA++IG+S+AFSLGLATTLA+LGV ASFAGKAYGQIG GL
Sbjct: 154 TLSVLPLTLGYIGAFGSGKGRAEVIGNSVAFSLGLATTLAILGVAASFAGKAYGQIGQGL 213

Query: 133 PLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCS 192
           PLAASGLA++MGLNLLEIIELQLPSFF+NFDPR+AAAN PSSVQAYLAGLTFALAASPCS
Sbjct: 214 PLAASGLAVIMGLNLLEIIELQLPSFFNNFDPRSAAANLPSSVQAYLAGLTFALAASPCS 273

Query: 193 TPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINP 252
           TPVLATLLGYVATSKDP+IGG+LLL+YTTGYVAPLLLAASFAGALQSLLSFRKFS+WINP
Sbjct: 274 TPVLATLLGYVATSKDPVIGGSLLLTYTTGYVAPLLLAASFAGALQSLLSFRKFSAWINP 333

Query: 253 MSGALLLGGGLYTFLDRLFPTTMAM 277
            SGALLLGGG+YT LDRLFPT+M M
Sbjct: 334 TSGALLLGGGIYTLLDRLFPTSMVM 358

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517207|ref|XP_003527280.1| PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein 2-like [Glycine max]

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 238/265 (89%), Positives = 257/265 (96%)

Query: 13  EGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPC 72
           E AAS+Y +ADGSLGD FGGFL+SAGQQANEAV GQL++LSFTSLAVI+GAGLVTSLSPC
Sbjct: 80  EVAASIYALADGSLGDWFGGFLFSAGQQANEAVQGQLTSLSFTSLAVIYGAGLVTSLSPC 139

Query: 73  TLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGL 132
           TLSVLPLTLGYIGAFGSGKSRAQ++GDSIAFSLGLATTLALLGVGASFAGKAYGQIG GL
Sbjct: 140 TLSVLPLTLGYIGAFGSGKSRAQVVGDSIAFSLGLATTLALLGVGASFAGKAYGQIGQGL 199

Query: 133 PLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCS 192
           PLAASGLAI+MGLNLLEIIEL+LPSFFD+FDPRAAAANFPSSVQAYLAGLTFALAASPCS
Sbjct: 200 PLAASGLAIIMGLNLLEIIELRLPSFFDSFDPRAAAANFPSSVQAYLAGLTFALAASPCS 259

Query: 193 TPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINP 252
           TPVLATLLGYVA SKDP+IGG+LLL+YTTGYV+PLLLAASFAGALQSLLSFRKFS+WINP
Sbjct: 260 TPVLATLLGYVAASKDPVIGGSLLLTYTTGYVSPLLLAASFAGALQSLLSFRKFSAWINP 319

Query: 253 MSGALLLGGGLYTFLDRLFPTTMAM 277
           +SGA+LLGGG+YTFLDRLFP TM M
Sbjct: 320 ISGAMLLGGGVYTFLDRLFPVTMVM 344

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358249182|ref|NP_001240262.1| cytochrome c-type biogenesis ccda-like chloroplastic protein 2-like [Glycine max] gi|32402380|gb|AAP81162.1| c-type cytochrome biogenesis protein [Glycine max] gi|255636862|gb|ACU18764.1| unknown [Glycine max]

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 237/265 (89%), Positives = 256/265 (96%)

Query: 13  EGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPC 72
           E AAS+Y +ADGSL D FGGFLYSAGQQANEAV GQL++LSFTSLAVI+GAGLVTSLSPC
Sbjct: 80  EVAASIYALADGSLNDWFGGFLYSAGQQANEAVQGQLTSLSFTSLAVIYGAGLVTSLSPC 139

Query: 73  TLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGL 132
           TLSVLPLTLGYIGAFGSGKSRA+++GDSIAFSLGLATTLALLGVGASFAGKAYGQIG GL
Sbjct: 140 TLSVLPLTLGYIGAFGSGKSRAEVVGDSIAFSLGLATTLALLGVGASFAGKAYGQIGQGL 199

Query: 133 PLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCS 192
           PLAASGLAI+MGLNLLEIIEL+LPSFFD+FDPRAAAANFPSSVQAYLAGLTFALAASPCS
Sbjct: 200 PLAASGLAIIMGLNLLEIIELRLPSFFDSFDPRAAAANFPSSVQAYLAGLTFALAASPCS 259

Query: 193 TPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINP 252
           TPVLATLLGYVA SKDP+IGG+LLL+YTTGYV+PLLLAASFAGALQSLLSFRKFS+WINP
Sbjct: 260 TPVLATLLGYVAASKDPVIGGSLLLTYTTGYVSPLLLAASFAGALQSLLSFRKFSAWINP 319

Query: 253 MSGALLLGGGLYTFLDRLFPTTMAM 277
           +SGA+LLGGG+YTFLDRLFP TM M
Sbjct: 320 ISGAMLLGGGVYTFLDRLFPVTMVM 344

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122910|ref|XP_002330394.1| predicted protein [Populus trichocarpa] gi|222871779|gb|EEF08910.1| predicted protein [Populus trichocarpa]

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 239/265 (90%), Positives = 256/265 (96%)

Query: 13  EGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPC 72
           E AASVYT+ADGS+GD FGGFLYS+GQQANEAV  QLSALSFTSLAVIFGAGLVTSLSPC
Sbjct: 1   EEAASVYTLADGSIGDWFGGFLYSSGQQANEAVQDQLSALSFTSLAVIFGAGLVTSLSPC 60

Query: 73  TLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGL 132
           TLSVLPLTLGYIGAFGSGKSRA+I+GDSIAF+LGLATTLALLG+ ASFAGK YGQIG GL
Sbjct: 61  TLSVLPLTLGYIGAFGSGKSRAEIVGDSIAFALGLATTLALLGIAASFAGKTYGQIGQGL 120

Query: 133 PLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCS 192
           PLAASGLA++MGLNLLE+IELQLPSFF+NFDPRAAAANFPSSVQAYLAGLTFALAASPCS
Sbjct: 121 PLAASGLAVIMGLNLLEVIELQLPSFFNNFDPRAAAANFPSSVQAYLAGLTFALAASPCS 180

Query: 193 TPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINP 252
           TPVLATLLGYVA SKDP++GG+LLL+YTTGYVAPLLLAASFAGALQSLLSFRKFS+WINP
Sbjct: 181 TPVLATLLGYVAASKDPVVGGSLLLTYTTGYVAPLLLAASFAGALQSLLSFRKFSAWINP 240

Query: 253 MSGALLLGGGLYTFLDRLFPTTMAM 277
           MSGALLLGGG+YTFLDRLFP TMAM
Sbjct: 241 MSGALLLGGGVYTFLDRLFPPTMAM 265

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646784|gb|ACU23864.1| unknown [Glycine max]

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 237/265 (89%), Positives = 256/265 (96%)

Query: 13  EGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPC 72
           E AAS+Y +ADGSLGD FGGFL+SAGQQANEAV GQL++LSFTSLAVI+GAGLVTSLSPC
Sbjct: 76  EVAASIYALADGSLGDWFGGFLFSAGQQANEAVQGQLTSLSFTSLAVIYGAGLVTSLSPC 135

Query: 73  TLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGL 132
           TLSVLPLTLGYIGAFGSGKSRAQ++GDSIAFSLGLATTLALLGVGASFAGKAYGQIG GL
Sbjct: 136 TLSVLPLTLGYIGAFGSGKSRAQVVGDSIAFSLGLATTLALLGVGASFAGKAYGQIGQGL 195

Query: 133 PLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCS 192
           PLAASGLAI+MGLNLLEIIEL+LPSFFD+FDPRAAAANFPSSVQAYLAGLTFALAASPCS
Sbjct: 196 PLAASGLAIIMGLNLLEIIELRLPSFFDSFDPRAAAANFPSSVQAYLAGLTFALAASPCS 255

Query: 193 TPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINP 252
           TPVLATLLGYVA SKDP+I G+LLL+YTTGYV+PLLLAASFAGALQSLLSFRKFS+WINP
Sbjct: 256 TPVLATLLGYVAASKDPVIRGSLLLTYTTGYVSPLLLAASFAGALQSLLSFRKFSAWINP 315

Query: 253 MSGALLLGGGLYTFLDRLFPTTMAM 277
           +SGA+LLGGG+YTFLDRLFP TM M
Sbjct: 316 ISGAMLLGGGVYTFLDRLFPVTMVM 340

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580440|ref|XP_002531046.1| Thiol:disulfide interchange protein dsbD precursor, putative [Ricinus communis] gi|223529374|gb|EEF31339.1| Thiol:disulfide interchange protein dsbD precursor, putative [Ricinus communis]

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 231/266 (86%), Positives = 251/266 (94%)

Query: 12  QEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSP 71
           +E    +YT+ADG +GD  G  LYSAGQQANEAV  QLSALSFTSLAVIFGAGLVTSLSP
Sbjct: 85  EEATIYMYTLADGGIGDWLGRLLYSAGQQANEAVQDQLSALSFTSLAVIFGAGLVTSLSP 144

Query: 72  CTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTG 131
           CTLSVLPLTLGYIGAFGSGKSRA+++ DSIAF+LGLATTLALLG+GASFAGKAYGQIG G
Sbjct: 145 CTLSVLPLTLGYIGAFGSGKSRAEVVADSIAFALGLATTLALLGIGASFAGKAYGQIGQG 204

Query: 132 LPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPC 191
           LPLAASGLA++MGLNLLEIIELQLPSFF+NFDPRAAAANFPSSVQAYLAGLTFALAASPC
Sbjct: 205 LPLAASGLAVIMGLNLLEIIELQLPSFFNNFDPRAAAANFPSSVQAYLAGLTFALAASPC 264

Query: 192 STPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWIN 251
           STPVLATLLGYVA SKDP++GG+LLL+YTTGYVAPLLLAASFAGALQSLLSFRKFS+WIN
Sbjct: 265 STPVLATLLGYVAASKDPIVGGSLLLTYTTGYVAPLLLAASFAGALQSLLSFRKFSAWIN 324

Query: 252 PMSGALLLGGGLYTFLDRLFPTTMAM 277
           PMSGALLLGGG+YTFLDRLFP +M+M
Sbjct: 325 PMSGALLLGGGVYTFLDRLFPVSMSM 350

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|27464259|gb|AAO16018.1| chloroplast biogenesis protein [Lotus japonicus]

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/266 (87%), Positives = 253/266 (95%), Gaps = 1/266 (0%)

Query: 13  EGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPC 72
           E AAS Y +ADGS+ D FGG LYSAGQQANEAVL QLS+LSFTSLAVIFGAGLVTSLSPC
Sbjct: 80  EVAASFYDLADGSINDWFGGILYSAGQQANEAVLDQLSSLSFTSLAVIFGAGLVTSLSPC 139

Query: 73  TLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGL 132
           TLSVLPLTLGYIGAFGSGKSRA++IGDSIAFSLGLATTLALLGV ASFAGKAYGQIG GL
Sbjct: 140 TLSVLPLTLGYIGAFGSGKSRAEVIGDSIAFSLGLATTLALLGVAASFAGKAYGQIGQGL 199

Query: 133 PLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCS 192
           PLAASGLA++MGLNLLEIIELQLPSFFD+FDPR+ AAN PSSVQAYLAGLTFALAASPCS
Sbjct: 200 PLAASGLAVIMGLNLLEIIELQLPSFFDSFDPRSVAANLPSSVQAYLAGLTFALAASPCS 259

Query: 193 TPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINP 252
           TPVLATLLGYVA SKDP+IGG+LLL+YTTGY+APLLLAASFAGALQSLLSFRK+S+WINP
Sbjct: 260 TPVLATLLGYVAASKDPVIGGSLLLTYTTGYIAPLLLAASFAGALQSLLSFRKYSAWINP 319

Query: 253 MSGALLLGGGLYTFLDRLFP-TTMAM 277
           +SGA+LLGGG+YTFLD+LFP TTMAM
Sbjct: 320 ISGAMLLGGGVYTFLDKLFPATTMAM 345

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|122206055|sp|Q2QY07.1|CCDA2_ORYSJ RecName: Full=Cytochrome c-type biogenesis ccda-like chloroplastic protein 2; AltName: Full=Cytochrome b6f biogenesis protein CCDA2; Flags: Precursor gi|77552967|gb|ABA95763.1| Cytochrome C biogenesis protein transmembrane region containing protein, expressed [Oryza sativa Japonica Group]

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/258 (83%), Positives = 243/258 (94%), Gaps = 1/258 (0%)

Query: 21  MADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLT 80
           +AD S+GD FG  LYSAGQQANEAV  QLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLT
Sbjct: 105 LADLSIGDWFGNLLYSAGQQANEAVQDQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLT 164

Query: 81  LGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLA 140
           LGYIGAFGSGK R++++G+S+AFSLGLATTLA+LGV ASFAGKAYGQ+G GLP+AASGLA
Sbjct: 165 LGYIGAFGSGKDRSEVVGNSVAFSLGLATTLAILGVAASFAGKAYGQVGQGLPVAASGLA 224

Query: 141 IVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLL 200
           ++MGLNLLE+IELQLPSFF ++DPRAAAAN PSSVQAYLAGLTFALAASPCSTPVLATLL
Sbjct: 225 VIMGLNLLEVIELQLPSFFSDYDPRAAAANLPSSVQAYLAGLTFALAASPCSTPVLATLL 284

Query: 201 GYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLG 260
           GYVATS+DP++GG+LLL+YTTGYVAPLL+AASFAGALQSLLSFR++S+WINP+SGA LLG
Sbjct: 285 GYVATSRDPIVGGSLLLTYTTGYVAPLLIAASFAGALQSLLSFRRYSAWINPISGAFLLG 344

Query: 261 GGLYTFLDRLFP-TTMAM 277
           GG+YT LDRLFP T+M M
Sbjct: 345 GGVYTLLDRLFPATSMVM 362

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|122208139|sp|Q2RAR6.1|CCDA1_ORYSJ RecName: Full=Cytochrome c-type biogenesis ccda-like chloroplastic protein 1; AltName: Full=Cytochrome b6f biogenesis protein CCDA1; Flags: Precursor gi|77548619|gb|ABA91416.1| Cytochrome C biogenesis protein transmembrane region containing protein, expressed [Oryza sativa Japonica Group] gi|215769034|dbj|BAH01263.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/258 (83%), Positives = 243/258 (94%), Gaps = 1/258 (0%)

Query: 21  MADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLT 80
           +AD S+GD FG  LYSAGQQANEAV  QLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLT
Sbjct: 110 LADLSVGDWFGNLLYSAGQQANEAVQDQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLT 169

Query: 81  LGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLA 140
           LGYIGAFGSGK R++++G+S+AFSLGLATTLA+LGV ASFAGKAYGQ+G GLP+AASGLA
Sbjct: 170 LGYIGAFGSGKDRSEVVGNSVAFSLGLATTLAILGVAASFAGKAYGQVGQGLPVAASGLA 229

Query: 141 IVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLL 200
           ++MGLNLLE+IELQLPSFF ++DPRAAAAN PSSVQAYLAGLTFALAASPCSTPVLATLL
Sbjct: 230 VIMGLNLLEVIELQLPSFFSDYDPRAAAANLPSSVQAYLAGLTFALAASPCSTPVLATLL 289

Query: 201 GYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLG 260
           GYVATS+DP++GG+LLL+YTTGYVAPLL+AASFAGALQSLLSFR++S+WINP+SGA LLG
Sbjct: 290 GYVATSRDPIVGGSLLLTYTTGYVAPLLIAASFAGALQSLLSFRRYSAWINPISGAFLLG 349

Query: 261 GGLYTFLDRLFP-TTMAM 277
           GG+YT LDRLFP T+M M
Sbjct: 350 GGVYTLLDRLFPATSMVM 367

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463144|ref|XP_004149294.1| PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein 2-like [Cucumis sativus] gi|449528927|ref|XP_004171453.1| PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein 2-like [Cucumis sativus]

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 238/265 (89%), Positives = 255/265 (96%)

Query: 13  EGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPC 72
           EGAASVYT+ADG +GD FGG LYSAGQQAN AV  QLSALSFTSLAVIFGAG VTSLSPC
Sbjct: 98  EGAASVYTLADGGMGDWFGGILYSAGQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPC 157

Query: 73  TLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGL 132
           TLSVLPLTLGYIGAFGSGKS+A+++G+S+AFSLGLATTLALLG+GASFAGKAYGQIG GL
Sbjct: 158 TLSVLPLTLGYIGAFGSGKSKAEVVGNSVAFSLGLATTLALLGIGASFAGKAYGQIGQGL 217

Query: 133 PLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCS 192
           PLAASGLA++MGLNLLEIIELQLPSFF+NFDPR+AAANFPSSVQAYLAGLTFALAASPCS
Sbjct: 218 PLAASGLAVIMGLNLLEIIELQLPSFFNNFDPRSAAANFPSSVQAYLAGLTFALAASPCS 277

Query: 193 TPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINP 252
           TPVLATLLGYVATSKDP+IGG+LLL+YTTGYV PLLLAASFAGALQSLLSFRKFSSWINP
Sbjct: 278 TPVLATLLGYVATSKDPIIGGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINP 337

Query: 253 MSGALLLGGGLYTFLDRLFPTTMAM 277
           +SGALLLGGGLYTFLDRLFP TMAM
Sbjct: 338 ISGALLLGGGLYTFLDRLFPVTMAM 362

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
TIGR_CMR|CHY_1095	395	CHY_1095 "thioredoxin domain s	0.823	0.577	0.319	2e-24
UNIPROTKB|Q748P3	228	dsbD "Thiol:disulfide intercha	0.758	0.921	0.303	2.9e-23
TIGR_CMR|GSU_2958	228	GSU_2958 "thiol:disulfide inte	0.758	0.921	0.303	2.9e-23
UNIPROTKB|Q5LUR2	245	soxV "Sulfur oxidation V prote	0.718	0.812	0.294	2e-17
TIGR_CMR|SPO_0991	245	SPO_0991 "sulfur oxidation V p	0.718	0.812	0.294	2e-17
TIGR_CMR|CBU_1723	630	CBU_1723 "thiol:disulfide inte	0.776	0.341	0.294	1.6e-11
UNIPROTKB|Q5LS73	250	ccdA "Cytochrome c-type biogen	0.703	0.78	0.306	2.9e-11
TIGR_CMR|SPO_1896	250	SPO_1896 "cytochrome c-type bi	0.703	0.78	0.306	2.9e-11
TIGR_CMR|CPS_0953	608	CPS_0953 "thiol:disulfide inte	0.758	0.345	0.254	6.6e-10
TIGR_CMR|SO_0696	610	SO_0696 "thiol:disulfide inter	0.653	0.296	0.284	1.5e-09

TIGR_CMR|CHY_1095 CHY_1095 "thioredoxin domain selenoprotein/cytochrome C biogenesis family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 75/235 (31%), Positives = 109/235 (46%)

Query:    36 SAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQ 95
             S  Q   + + G L      +L V+F  G+ TS +PC L ++PL +GY G + +G+S A+
Sbjct:   167 SFAQTLADKLPGLLGDSKLLALFVVFLGGIATSFTPCILGMIPLIIGYTGGY-AGRSPAK 225

Query:    96 IIGDSIAFSXXXXXXXXXXXVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQL 155
                 S+ F            VG    G                +AI+MG  ++    + L
Sbjct:   226 GFIYSLFFVLGLATTLTLLGVGIGVLGTFIKSRLFAFNFILGIVAILMGFAVMGFYTINL 285

Query:   156 PSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTL 215
             P       P      F S    YL GL F L+ASPC+TPVL  ++ Y      PL GG L
Sbjct:   286 PGL--KRMPVKGTGLFSS----YLMGLFFGLSASPCATPVLIVIVTYALAKASPLFGGAL 339

Query:   216 LLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRL 270
             L SY+ G+  PL+LA +F+  L  + S  ++   IN + G +L+  GLY    RL
Sbjct:   340 LFSYSFGHGLPLILAGTFSAFLGKITSLGRYGEIINYIFGGILVLYGLYLLFGRL 394

GO:0017004 "cytochrome complex assembly" evidence=ISS

UNIPROTKB|Q748P3 dsbD "Thiol:disulfide interchange protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 67/221 (30%), Positives = 110/221 (49%)

Query:    54 FTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSXXXXXXXXX 113
             F +   +F  G+++S SPC L+ +PL +G++G + + +SR +    S++F          
Sbjct:    16 FLAFVAVFVGGVLSSASPCVLATIPLVVGFVGGYAA-ESRKKAFLYSLSFIVGLSLTFTI 74

Query:   114 XXVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPS 173
                 A+  G  +G +G     A   +A+ MGL ++   EL+LP     F P+     F  
Sbjct:    75 FGAAAALLGTMFGTVGGWWYAAVGAVAVAMGLQMMGFYELRLP-VLPQFRPKRGG--FWG 131

Query:   174 SVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASF 233
                A L GL F +A+SPC+TPVL  +L + A   + L G  LL +Y  G+   +L A +F
Sbjct:   132 ---ALLLGLFFGVASSPCATPVLVVILSFAALQGNILYGTLLLFTYALGHCLLMLAAGTF 188

Query:   234 AGALQSLLSFR---KFSSWINPMSGALLLGGGLYTFLDRLF 271
              G +++  + R     S W    SGA++   G + F+ R F
Sbjct:   189 TGFVEAFAASRGVANVSHWAKRGSGAVIALAGAW-FIWRAF 228

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_2958 GSU_2958 "thiol:disulfide interchange protein, putative" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 67/221 (30%), Positives = 110/221 (49%)

Query:    54 FTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSXXXXXXXXX 113
             F +   +F  G+++S SPC L+ +PL +G++G + + +SR +    S++F          
Sbjct:    16 FLAFVAVFVGGVLSSASPCVLATIPLVVGFVGGYAA-ESRKKAFLYSLSFIVGLSLTFTI 74

Query:   114 XXVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPS 173
                 A+  G  +G +G     A   +A+ MGL ++   EL+LP     F P+     F  
Sbjct:    75 FGAAAALLGTMFGTVGGWWYAAVGAVAVAMGLQMMGFYELRLP-VLPQFRPKRGG--FWG 131

Query:   174 SVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASF 233
                A L GL F +A+SPC+TPVL  +L + A   + L G  LL +Y  G+   +L A +F
Sbjct:   132 ---ALLLGLFFGVASSPCATPVLVVILSFAALQGNILYGTLLLFTYALGHCLLMLAAGTF 188

Query:   234 AGALQSLLSFR---KFSSWINPMSGALLLGGGLYTFLDRLF 271
              G +++  + R     S W    SGA++   G + F+ R F
Sbjct:   189 TGFVEAFAASRGVANVSHWAKRGSGAVIALAGAW-FIWRAF 228

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5LUR2 soxV "Sulfur oxidation V protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 63/214 (29%), Positives = 100/214 (46%)

Query:    57 LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAF------GSGK----SRAQIIGDSIAFSXX 106
             L  +F AGL++  +PC L ++P  L Y+G        G G+    ++ ++I  S+AF+  
Sbjct:     7 LGALF-AGLLSFFTPCVLPMVPFYLSYMGGLSMAELRGDGRIAPGAQRRLIVSSVAFAAG 65

Query:   107 XXXXXXXXXVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRA 166
                      +GA+  G+ +G     L  AA+ + +V GL+ L +I + L       D   
Sbjct:    66 VTSVFMMLGMGATALGRLFGTYLDTLSWAAAAILVVFGLHFLGVIRVPLLYREARMDSTM 125

Query:   167 AAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAP 226
              A+     + AYL GL F    +PC  P LA +L   +   +   GG LLL Y  G  AP
Sbjct:   126 PASTL---LGAYLMGLAFGFGWTPCVGPALAAILMIASGMGEIWRGGLLLLVYGIGMTAP 182

Query:   227 LLLAASFAGALQSLLS-FRKFSSWINPMSGALLL 259
              ++AA FA      +   R   +W+    GA+L+
Sbjct:   183 FVVAAFFARPFLGWVQRHRAAFAWVEKGMGAMLI 216

GO:0016491 "oxidoreductase activity" evidence=ISS

GO:0019417 "sulfur oxidation" evidence=ISS

TIGR_CMR|SPO_0991 SPO_0991 "sulfur oxidation V protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 63/214 (29%), Positives = 100/214 (46%)

Query:    57 LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAF------GSGK----SRAQIIGDSIAFSXX 106
             L  +F AGL++  +PC L ++P  L Y+G        G G+    ++ ++I  S+AF+  
Sbjct:     7 LGALF-AGLLSFFTPCVLPMVPFYLSYMGGLSMAELRGDGRIAPGAQRRLIVSSVAFAAG 65

Query:   107 XXXXXXXXXVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRA 166
                      +GA+  G+ +G     L  AA+ + +V GL+ L +I + L       D   
Sbjct:    66 VTSVFMMLGMGATALGRLFGTYLDTLSWAAAAILVVFGLHFLGVIRVPLLYREARMDSTM 125

Query:   167 AAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAP 226
              A+     + AYL GL F    +PC  P LA +L   +   +   GG LLL Y  G  AP
Sbjct:   126 PASTL---LGAYLMGLAFGFGWTPCVGPALAAILMIASGMGEIWRGGLLLLVYGIGMTAP 182

Query:   227 LLLAASFAGALQSLLS-FRKFSSWINPMSGALLL 259
              ++AA FA      +   R   +W+    GA+L+
Sbjct:   183 FVVAAFFARPFLGWVQRHRAAFAWVEKGMGAMLI 216

GO:0016491 "oxidoreductase activity" evidence=ISS

GO:0019417 "sulfur oxidation" evidence=ISS

TIGR_CMR|CBU_1723 CBU_1723 "thiol:disulfide interchange protein DsbD" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 180 (68.4 bits), Expect = 1.6e-11, P = 1.6e-11
 Identities = 68/231 (29%), Positives = 99/231 (42%)

Query:    54 FTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSXXXXXXXXX 113
             F  L   FG GL+ S +PC L ++P+  G I   G  K   +  G S+ +          
Sbjct:   221 FFVLLSFFGFGLLLSFTPCVLPMIPVLSGII--VGQQKYPKRAFGLSLMYVLGMAITYAI 278

Query:   114 XXVGASFAGKAYGQIGTGLPLAA---SGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAAN 170
               V   F G    Q     P      S L I M L+L  + +LQLP     +  R A A+
Sbjct:   279 AGVIFGFIGSTV-QAAFQNPWLIGLFSLLFIAMALSLFGLYDLQLPQ---RWQTRLAQAS 334

Query:   171 FPSSVQAYLA----GLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAP 226
                    YL     G    L  SPC TP L  +LGY++ + +  +GG  L +   G  AP
Sbjct:   335 DRQKHGTYLGTALMGALSTLILSPCVTPALVGVLGYISHTGNASLGGVALFTMGLGMGAP 394

Query:   227 LLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRLFPTTMAM 277
             LLL  +F+   + L     + + I  + G L+L   ++  L R+ P T+ M
Sbjct:   395 LLLLGAFSR--KWLPKAGPWMTVIKHILGVLMLAVAVW-LLARILPGTVTM 442

GO:0009055 "electron carrier activity" evidence=ISS

GO:0017004 "cytochrome complex assembly" evidence=ISS

UNIPROTKB|Q5LS73 ccdA "Cytochrome c-type biogenesis protein CcdA" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 168 (64.2 bits), Expect = 2.9e-11, P = 2.9e-11
 Identities = 64/209 (30%), Positives = 92/209 (44%)

Query:    64 GLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSXXXXXXXXXXXVGA--SFA 121
             G+V+ LSPC L ++P  L Y+     G+ + Q      A             V     F 
Sbjct:    22 GIVSFLSPCVLPIVPPYLAYMSGVTLGEIQDQAAARRKATLAALFFVLGLSTVFLLLGFT 81

Query:   122 GKAYGQ-IGTGLPLAA--SGLA-IVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSV-Q 176
               A+G  + +   L A  SG+  IV GL+ L +  + L    D  + R    +   SV  
Sbjct:    82 ASAFGAFVLSNQELFAKVSGVVVIVFGLHFLSVFRIPL---LDR-EARMQTGDAGGSVFG 137

Query:   177 AYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLS-YTTGYVAPLLLAASFAG 235
             AY+ GL FA   +PC  P L  +L  +A S+  +  GTLLL  Y  G   P LLAA F  
Sbjct:   138 AYVLGLAFAFGWTPCIGPQLGAILS-LAASEASVARGTLLLGVYAAGLGVPFLLAAMFLS 196

Query:   236 ALQSLLS-FRKFSSWINPMSGALLLGGGL 263
                +L++  +     I  + G LLL  G+
Sbjct:   197 RSMALMNRIKPHMGLIEKVMGGLLLFVGI 225

GO:0003674 "molecular_function" evidence=ND

GO:0017004 "cytochrome complex assembly" evidence=ISS

TIGR_CMR|SPO_1896 SPO_1896 "cytochrome c-type biogenesis protein CcdA" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 168 (64.2 bits), Expect = 2.9e-11, P = 2.9e-11
 Identities = 64/209 (30%), Positives = 92/209 (44%)

Query:    64 GLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSXXXXXXXXXXXVGA--SFA 121
             G+V+ LSPC L ++P  L Y+     G+ + Q      A             V     F 
Sbjct:    22 GIVSFLSPCVLPIVPPYLAYMSGVTLGEIQDQAAARRKATLAALFFVLGLSTVFLLLGFT 81

Query:   122 GKAYGQ-IGTGLPLAA--SGLA-IVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSV-Q 176
               A+G  + +   L A  SG+  IV GL+ L +  + L    D  + R    +   SV  
Sbjct:    82 ASAFGAFVLSNQELFAKVSGVVVIVFGLHFLSVFRIPL---LDR-EARMQTGDAGGSVFG 137

Query:   177 AYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLS-YTTGYVAPLLLAASFAG 235
             AY+ GL FA   +PC  P L  +L  +A S+  +  GTLLL  Y  G   P LLAA F  
Sbjct:   138 AYVLGLAFAFGWTPCIGPQLGAILS-LAASEASVARGTLLLGVYAAGLGVPFLLAAMFLS 196

Query:   236 ALQSLLS-FRKFSSWINPMSGALLLGGGL 263
                +L++  +     I  + G LLL  G+
Sbjct:   197 RSMALMNRIKPHMGLIEKVMGGLLLFVGI 225

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=ISS

GO:0017004 "cytochrome complex assembly" evidence=ISS

TIGR_CMR|CPS_0953 CPS_0953 "thiol:disulfide interchange protein DsbD" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 167 (63.8 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 57/224 (25%), Positives = 96/224 (42%)

Query:    56 SLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSXXXXXXXXXXX 115
             +L   F  GL+ S +PC   + P+  G I   G G +  +    S  +            
Sbjct:   196 TLIAFFVGGLLLSFTPCVFPMYPILTGIIVGQGEGLTTKKAFTLSFFYVQGMAITYTLLG 255

Query:   116 VGASFAGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPSFFDNFDPRAAAANFP 172
             V  + AG  +  +    P+   GL+I+   + L++  +  L LP+ + N     +     
Sbjct:   256 VVVAMAGAKFQAVFQH-PIVLIGLSILFIFLALSMFGVFNLALPASWQNKLNNVSNKQKG 314

Query:   173 SSVQAYLA-GLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAA 231
              S+   L  G+   L ASPC+T  L   L Y++ + D ++G + L + + G   PLL+  
Sbjct:   315 GSITGVLMMGVISGLVASPCTTAPLTGALLYISQTGDVVLGASALYALSLGMGLPLLILG 374

Query:   232 SFAGALQSLLSFRKFSSWINPMS---GALLLGGGLYTFLDRLFP 272
             S  G L       K  +W+N +    G LLL   ++  L+R  P
Sbjct:   375 SSGGKL-----LPKAGAWMNIIKNIFGLLLLAVPVF-LLERFIP 412

GO:0003756 "protein disulfide isomerase activity" evidence=ISS

GO:0009055 "electron carrier activity" evidence=ISS

GO:0047134 "protein-disulfide reductase activity" evidence=ISS

TIGR_CMR|SO_0696 SO_0696 "thiol:disulfide interchange protein DsbD" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 164 (62.8 bits), Expect = 1.5e-09, P = 1.5e-09
 Identities = 53/186 (28%), Positives = 84/186 (45%)

Query:    56 SLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSXXXXXXXXXXX 115
             +L + FG G+  +L+PC   + P+  G I   G   S A+    S+A+            
Sbjct:   200 TLVIFFGLGIGLALTPCVFPMYPILSGIIVGQGQKLSTAKAFTLSMAYVQGMAITYSILG 259

Query:   116 VGASFAGKAYGQIGTGLPLAASGLAI---VMGLNLLEIIELQLPSFF-DNFDPRAAAANF 171
             +  + AG  Y Q     P     LAI   V+ L++  + +L+LPS F +  +  +     
Sbjct:   260 LVVASAGMKY-QAALQHPAVLVVLAILFFVLSLSMFGLYDLKLPSRFQEKMNSISNNQKG 318

Query:   172 PSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAA 231
              + +  +L G+   L ASPC+T  L+  L YVA + D L G   L   + G   PLL+  
Sbjct:   319 GNLIGVFLMGVISGLVASPCTTAPLSGALVYVAQTGDLLQGFLALYVLSMGMGVPLLIIG 378

Query:   232 SFAGAL 237
             +  G L
Sbjct:   379 TSGGKL 384

GO:0003824 "catalytic activity" evidence=ISS

GO:0017004 "cytochrome complex assembly" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2QY07	CCDA2_ORYSJ	No assigned EC number	0.8333	0.9277	0.7099	yes	no
Q9M5P3	CCDA_ARATH	No assigned EC number	0.8609	0.9566	0.7485	yes	no
Q2RAR6	CCDA1_ORYSJ	No assigned EC number	0.8333	0.9277	0.7002	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	277
pfam02683	206	pfam02683, DsbD, Cytochrome C biogenesis protein t	4e-37
COG0785	220	COG0785, CcdA, Cytochrome c biogenesis protein [Po	4e-29
COG4232	569	COG4232, COG4232, Thiol:disulfide interchange prot	2e-18
PRK00293	571	PRK00293, dipZ, thiol:disulfide interchange protei	4e-11
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-04

>gnl|CDD|217183 pfam02683, DsbD, Cytochrome C biogenesis protein transmembrane region

 Score =  130 bits (328), Expect = 4e-37
 Identities = 70/208 (33%), Positives = 102/208 (49%), Gaps = 2/208 (0%)

Query: 60  IFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGAS 119
            F AGL++ LSPC L ++P  L YI     G  +  ++  ++ F LGL+     LG GA+
Sbjct: 1   AFLAGLLSFLSPCILPLIPAYLSYISGVSLGDRKQGVLLKALLFVLGLSIVFLSLGYGAA 60

Query: 120 FAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYL 179
           F G  +      L + A  + I+MGL+ L +  +                     + A+L
Sbjct: 61  FLGGLFRDYLGYLRVIAGIIVILMGLHFLGVFPIGFLRKLRL--GHKKLKVEGPMLGAFL 118

Query: 180 AGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQS 239
            G+ FAL  +PC  P+LA++L   A+S   L+   LL+ Y  G   P LLA+ FAG+L  
Sbjct: 119 LGMLFALGWTPCIGPILASVLALAASSGSLLLAALLLVVYVLGLGIPFLLASLFAGSLLF 178

Query: 240 LLSFRKFSSWINPMSGALLLGGGLYTFL 267
           L   RK S WI   SG LL+  G+   L
Sbjct: 179 LRWLRKNSRWIRIASGVLLILIGILLLL 206

This family consists of the transmembrane (i.e. non-catalytic) region of Cytochrome C biogenesis proteins also known as disulphide interchange proteins. These proteins posses a protein disulphide isomerase like domain that is not found within the aligned region of this family. Length = 206

>gnl|CDD|223856 COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]

 Score =  109 bits (275), Expect = 4e-29
 Identities = 74/217 (34%), Positives = 109/217 (50%), Gaps = 6/217 (2%)

Query: 50  SALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLAT 109
           + +   S+ + F AGL++ LSPC L +LP  L Y+   GS  +R  ++  S+ F LG AT
Sbjct: 6   ALVGTVSILLAFLAGLLSFLSPCVLPLLPAYLSYLAG-GSLGARKSVLLASLLFVLGFAT 64

Query: 110 TLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAA 169
              LLG+GAS  G         L   A  L I++GL  L ++ L L   F  F  +    
Sbjct: 65  VFVLLGIGASGLGAFLPLNRLYLRYIAGILLILLGLLFLGVLRLPLLLRFARFQLKGK-- 122

Query: 170 NFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLL 229
              +++ A+L GL FAL  +PC  P+L ++L   A++   ++G  LL +Y  G   P LL
Sbjct: 123 -SVTALGAFLLGLLFALGWTPCIGPILGSILALAASTGSVVLGALLLAAYALGLALPFLL 181

Query: 230 AASFAGALQSLLS--FRKFSSWINPMSGALLLGGGLY 264
            A  +G      S   R+ S  I  + GALL+  GL 
Sbjct: 182 LALLSGRALKAFSRKLRRHSGAIEIVGGALLILLGLL 218

Length = 220

>gnl|CDD|226685 COG4232, COG4232, Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

 Score = 84.3 bits (209), Expect = 2e-18
 Identities = 62/190 (32%), Positives = 87/190 (45%), Gaps = 13/190 (6%)

Query: 56  SLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGL--ATTLAL 113
           SL + F  GL+ + +PC L +LPL  G +   GS K  ++     ++F      A    L
Sbjct: 169 SLLLAFLGGLLLNFTPCVLPMLPLLSGIV--LGSAKRASKARAFGLSFVYVQGMALAYTL 226

Query: 114 LGVGASFAGKAYGQIGTGL--PLAASGLAIVM---GLNLLEIIELQLP-SFFDNFDPRAA 167
           LG+ A+ AG         L  P    GLA +     L++  + ELQLP S       ++ 
Sbjct: 227 LGLVAAAAG---LGWQAQLQQPWVLGGLAALFVLLALSMFGLFELQLPSSLQTRLTQQSN 283

Query: 168 AANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPL 227
            A+  S V A+  G    L  SPC+ P LA  L Y+A S + L+GG  L +   G   PL
Sbjct: 284 RASGGSIVGAFFMGALAGLVVSPCTAPPLAGALLYIAQSGNALLGGLALYALGLGMGLPL 343

Query: 228 LLAASFAGAL 237
           LL   F   L
Sbjct: 344 LLIGVFGNRL 353

Length = 569

>gnl|CDD|234717 PRK00293, dipZ, thiol:disulfide interchange protein precursor; Provisional

 Score = 62.9 bits (154), Expect = 4e-11
 Identities = 55/215 (25%), Positives = 85/215 (39%), Gaps = 30/215 (13%)

Query: 39  QQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIG 98
                     L++L ++ L   F  G+  + +PC L + P+  G +       S A+ + 
Sbjct: 152 PAPAGQATASLASLPWS-LLWFFLIGIGLAFTPCVLPMYPILSGIVLGGKQRLSTARALL 210

Query: 99  DSIAFSLGLATTLALLG-VGASFAGKAYGQIGTGLPLAA-----------SGLAIVMGLN 146
            S  +  G+A T  LLG V A+           GL   A           S L +++ L+
Sbjct: 211 LSFVYVQGMALTYTLLGLVVAAA----------GLQFQAALQHPYVLIGLSILFVLLALS 260

Query: 147 LLEIIELQLPSFF----DNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGY 202
           +  +  LQLPS           R    +       ++ G    L  SPC+T  L+  L Y
Sbjct: 261 MFGLFTLQLPSSLQTRLTLLSNRQQGGSLGG---VFVMGAISGLICSPCTTAPLSGALLY 317

Query: 203 VATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGAL 237
           +A S D L+GG  L     G   PL+L  +F   L
Sbjct: 318 IAQSGDLLLGGLTLYLLALGMGLPLILITTFGNKL 352

Length = 571

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 6/41 (14%)

Query: 76  VLPLTLGYI---GAFGSGKSRAQIIGDSIAFSLGLATTLAL 113
           V+P + G+    G  GSGKS    IGD+I F+LGL+++ A+
Sbjct: 18  VIPFSKGFTVISGPNGSGKSN---IGDAILFALGLSSSKAM 55

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	277
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	100.0
PF02683	211	DsbD: Cytochrome C biogenesis protein transmembran	100.0
COG0785	220	CcdA Cytochrome c biogenesis protein [Posttranslat	99.97
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	99.97
COG2836	232	Uncharacterized conserved protein [Function unknow	99.85
PF13386	199	DsbD_2: Cytochrome C biogenesis protein transmembr	99.85
PRK10019	279	nickel/cobalt efflux protein RcnA; Provisional	98.33
PF11139	214	DUF2910: Protein of unknown function (DUF2910); In	97.99
COG2215	303	ABC-type uncharacterized transport system, permeas	97.35
PF01810	191	LysE: LysE type translocator; InterPro: IPR001123	96.73
COG0785	220	CcdA Cytochrome c biogenesis protein [Posttranslat	95.61
PF02683	211	DsbD: Cytochrome C biogenesis protein transmembran	95.6
PRK10520	205	rhtB homoserine/homoserine lactone efflux protein;	95.41
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	94.94
COG1280	208	RhtB Putative threonine efflux protein [Amino acid	94.76
PF09930	224	DUF2162: Predicted transporter (DUF2162); InterPro	93.01
TIGR00949	185	2A76 The Resistance to Homoserine/Threonine (RhtB)	92.68
PRK09304	207	arginine exporter protein; Provisional	92.66
PRK10958	212	leucine export protein LeuE; Provisional	92.61
PF01914	203	MarC: MarC family integral membrane protein; Inter	92.35
PRK10995	221	inner membrane protein; Provisional	92.17
PRK11111	214	hypothetical protein; Provisional	89.61
TIGR00427	201	membrane protein, MarC family. MarC is a protein t	89.5
PRK10229	206	threonine efflux system; Provisional	89.39
PF09948	191	DUF2182: Predicted metal-binding integral membrane	86.98
COG2095	203	MarC Multiple antibiotic transporter [Intracellula	85.91
PF03824	282	NicO: High-affinity nickel-transport protein; Inte	85.45
PF13386	199	DsbD_2: Cytochrome C biogenesis protein transmembr	85.04
TIGR00948	177	2a75 L-lysine exporter.	80.47

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=100.00  E-value=1.6e-36  Score=301.66  Aligned_cols=257  Identities=25%  Similarity=0.331  Sum_probs=194.9

Q ss_pred             CCCCCCCCcccccceeeeccCCcccccccccccccchhhHHHhhhcccccchhhHHhhccccccccCcceeeeecccccc
Q 023793            4 NSNYFPSSQEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGY   83 (277)
Q Consensus         4 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~f~aGlltslsPC~l~~lp~~l~~   83 (277)
                      ..||||.|+++.....+.++....+   ..  +.++   +  +++ ++..+..++.+|++|++++++||++||+|+++++
T Consensus       127 G~CYPP~t~~~~l~~~~~~~~~~~~---~~--~~~~---~--~~~-~~~~~~~l~~afl~Glll~l~PCvlP~lpi~~~~  195 (571)
T PRK00293        127 GFCYPPETRTVPLSAVAANSAPAPA---PA--PAGQ---A--TAS-LASLPWSLLWFFLIGIGLAFTPCVLPMYPILSGI  195 (571)
T ss_pred             CeecCCeeEEEEecccccccCCccC---CC--Cccc---c--ccc-cccchHHHHHHHHHHHHHhccchhhHhHHHHHHH
Confidence            4799999999876432221111100   00  0011   1  111 1233568889999999999999999999999998


Q ss_pred             ccccCCCCccceeecchhhhhhhHHHHHHHHhhhhhccccccccc--cCCccchhhhhHHHhhchhHHHHHhhcCCccC-
Q 023793           84 IGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQI--GTGLPLAASGLAIVMGLNLLEIIELQLPSFFD-  160 (277)
Q Consensus        84 i~~~~~~~~r~~~~~~~~~f~lG~~~ty~~LG~l~~~~G~~~~~~--~~~~~~~~g~l~il~GL~ll~~~~~~~p~~~~-  160 (277)
                      +.+.+++++|++.+..++.|++|++++|+++|++++.+|..++..  ..++.++.+++++++|++++|.+++++|.... 
T Consensus       196 ~~~~~~~~~~~~~~~~~l~y~lG~~~ty~~lG~~a~~~G~~~~~~~q~~~~~~~~~~l~v~lgL~~~G~~~l~lp~~~~~  275 (571)
T PRK00293        196 VLGGKQRLSTARALLLSFVYVQGMALTYTLLGLVVAAAGLQFQAALQHPYVLIGLSILFVLLALSMFGLFTLQLPSSLQT  275 (571)
T ss_pred             HhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcceeccCcHHHHH
Confidence            876432235667788899999999999999999999999877532  23567788899999999999998887776432 


Q ss_pred             CCChhhhhcCCChhHHHHHhhhhhhhccCCCChHHHHHHHHHHhhcCCCcccceeeeeeecchhHHHHHHHHHHHHHHHH
Q 023793          161 NFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSL  240 (277)
Q Consensus       161 ~~~~~~~~~~~~~~~~~fllG~~~gl~~~PC~~p~l~~iL~~a~~~g~~~~G~~ll~~fglG~~lPlll~~~~~~~l~~~  240 (277)
                      +.++...+++.++..++|++|+++|++++||++|++++++.++++++|+..|++.|++||+|+++|+++++.+.+++  +
T Consensus       276 ~~~~~~~~~~~~~~~gaf~~G~l~~l~~~PC~~p~L~~~L~~aa~tg~~~~g~~~l~~~gLG~~~Plll~~~~~~~~--l  353 (571)
T PRK00293        276 RLTLLSNRQQGGSLGGVFVMGAISGLICSPCTTAPLSGALLYIAQSGDLLLGGLTLYLLALGMGLPLILITTFGNKL--L  353 (571)
T ss_pred             HhhhhhhcccCCchHhHHHHHHHHHHHhCCCchHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--c
Confidence            12221122344668999999999999999999999999999999999999999999999999999999999886543  2


Q ss_pred             HhhcccccccccccchhhhcCchhhhhhhccccc
Q 023793          241 LSFRKFSSWINPMSGALLLGGGLYTFLDRLFPTT  274 (277)
Q Consensus       241 ~~~~~~~~~i~~i~G~lli~~Gi~~ll~~~~~~~  274 (277)
                      .+.++|.++++++.|++|+++|+| ++.+++|.+
T Consensus       354 pk~g~wm~~~k~~~G~~ll~~~~~-ll~~~~~~~  386 (571)
T PRK00293        354 PKSGPWMNQVKTAFGFVLLALPVF-LLERVLPGV  386 (571)
T ss_pred             ccCccHHHHHHHHHHHHHHHHHHH-HHHHHhhHH
Confidence            344556667788999999999999 666777764

>PF02683 DsbD: Cytochrome C biogenesis protein transmembrane region; InterPro: IPR003834 DsbA and DsbC, periplasmic proteins of Escherichia coli, are two key players involved in disulphide bond formation

Probab=100.00  E-value=2.8e-35  Score=258.83  Aligned_cols=207  Identities=41%  Similarity=0.630  Sum_probs=174.5

Q ss_pred             hhccccccccCcceeeeeccccccccccCCCCccce---eecchhhhhhhHHHHHHHHhhhhhccccccccccCCccchh
Q 023793           60 IFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQ---IIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAA  136 (277)
Q Consensus        60 ~f~aGlltslsPC~l~~lp~~l~~i~~~~~~~~r~~---~~~~~~~f~lG~~~ty~~LG~l~~~~G~~~~~~~~~~~~~~  136 (277)
                      +|.+|+++++|||++|++|++++++.+++++++|++   .+..++.|.+|..++|..+|..++.+|+.+++..+++..+.
T Consensus         1 af~aGll~~~sPC~lp~lp~~l~~~~~~~~~~~~~~~~~~~~~~l~f~~G~~~~~~~lG~~~~~~g~~~~~~~~~~~~i~   80 (211)
T PF02683_consen    1 AFLAGLLSSFSPCVLPVLPLYLSYIAGSGASSRRKGKRVALLLGLAFVLGFALVFALLGLGAGALGSFFGQISPWLYIIA   80 (211)
T ss_pred             ChHHHHHHhcCcHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            588999999999999999999999887543222322   47889999999999999999999999999987777889999


Q ss_pred             hhhHHHhhchhHHHHHhhcCCccCCCChhhhhcCCChhHHHHHhhhhhhhccCCCChHHHHHHHHHHhhcCCCcccceee
Q 023793          137 SGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLL  216 (277)
Q Consensus       137 g~l~il~GL~ll~~~~~~~p~~~~~~~~~~~~~~~~~~~~~fllG~~~gl~~~PC~~p~l~~iL~~a~~~g~~~~G~~ll  216 (277)
                      |++++++|+++++.++.+.++..+.. .+.+++++++..++|++|+.++++++||++|++.+++.++++++|+.+|..++
T Consensus        81 g~~~i~~Gl~~l~~~~~~~l~~~~~~-~~~~~~~~~~~~gaf~lG~~~~l~~~PC~~p~l~~il~~a~~~~~~~~~~~ll  159 (211)
T PF02683_consen   81 GVLLILFGLSLLGLFEIPFLSRPRLG-LRSKRKSGGGLLGAFLLGLLFGLVWSPCTGPILAAILALAASSGSVLQGLLLL  159 (211)
T ss_pred             HHHHHHHHHHHHHhhcchhhhhhhhh-hhhhcCCCCCcccHHHHHHHHHHHhhhcchHHHHHHHHHHHcCCchHHHHHHH
Confidence            99999999999987764332221111 11122344557899999999999999999999999999999999999999999


Q ss_pred             eeeecchhHHHHHHHHHHHHHH-HHHhhcccccccccccchhhhcCchhhhh
Q 023793          217 LSYTTGYVAPLLLAASFAGALQ-SLLSFRKFSSWINPMSGALLLGGGLYTFL  267 (277)
Q Consensus       217 ~~fglG~~lPlll~~~~~~~l~-~~~~~~~~~~~i~~i~G~lli~~Gi~~ll  267 (277)
                      ++|++|+++|+++++.+.+..+ +.++.+||++|+|++.|++++++|+|+++
T Consensus       160 ~~y~lG~~lPll~~~~~~~~~~~~~~~~~~~~~~i~~~~G~lli~~g~~~l~  211 (211)
T PF02683_consen  160 LAYGLGFGLPLLLIGLFSGSLLRRLRKLRRWSRWIKRISGILLIALGLYLLT  211 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999999999999888765 66678899999999999999999999763

DsbD generates a reducing source in the periplasm, which is required for maintaining proper redox conditions []. DipZ is essential for maintaining cytochrome c apoproteins in the correct conformations for the covalent attachment of haem groups to the appropriate pairs of cysteine residues [].; GO: 0017004 cytochrome complex assembly, 0055114 oxidation-reduction process, 0016020 membrane

>COG0785 CcdA Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2.2e-33  Score=248.09  Aligned_cols=207  Identities=34%  Similarity=0.513  Sum_probs=182.7

Q ss_pred             hhhHHhhccccccccCcceeeeeccccccccccCCCCccceeecchhhhhhhHHHHHHHHhhhhhccccccccccCCccc
Q 023793           55 TSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPL  134 (277)
Q Consensus        55 ~~l~~~f~aGlltslsPC~l~~lp~~l~~i~~~~~~~~r~~~~~~~~~f~lG~~~ty~~LG~l~~~~G~~~~~~~~~~~~  134 (277)
                      .++..+|.+|+++++|||++|++|.+++++.+.+ .++|++.+.+++.|.+|..++|..+|+.+...|+.+....+++++
T Consensus        11 ~~~~~aflaGlls~lSPCilpllP~~l~~~~~~~-~~~r~~~~~~~l~FvlG~~~vf~~lG~~~~~~~~~~~~~~~~l~~   89 (220)
T COG0785          11 VSILLAFLAGLLSFLSPCVLPLLPAYLSYLAGGS-LGARKSVLLASLLFVLGFATVFVLLGIGASGLGAFLPLNRLYLRY   89 (220)
T ss_pred             hHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4688899999999999999999999999987643 233778889999999999999999999999999999877678999


Q ss_pred             hhhhhHHHhhchhHHHHHhhcCCccCCCChhhhhcCCChhHHHHHhhhhhhhccCCCChHHHHHHHHHHhhcCCCcccce
Q 023793          135 AASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGT  214 (277)
Q Consensus       135 ~~g~l~il~GL~ll~~~~~~~p~~~~~~~~~~~~~~~~~~~~~fllG~~~gl~~~PC~~p~l~~iL~~a~~~g~~~~G~~  214 (277)
                      +.|++++++|+++++..+.+.++...+++.   +.+.++..++|.+|++++++|+||.+|++.++++++++++|...|..
T Consensus        90 i~gi~li~~Gl~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~f~lGl~f~~~wtPC~gPil~sil~laa~~~~~~~g~~  166 (220)
T COG0785          90 IAGILLILLGLLFLGVLRLPLLLRFARFQL---KGKSVTALGAFLLGLLFALGWTPCIGPILGSILALAASTGSVVLGAL  166 (220)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhcchhhh---ccCCCcchhHHHHHHHHHHHhccchhHHHHHHHHHHhcCCcHHHHHH
Confidence            999999999999999887666554433321   12356789999999999999999999999999999999999999999


Q ss_pred             eeeeeecchhHHHHHHHHHHHHHHH--HHhhcccccccccccchhhhcCchhh
Q 023793          215 LLLSYTTGYVAPLLLAASFAGALQS--LLSFRKFSSWINPMSGALLLGGGLYT  265 (277)
Q Consensus       215 ll~~fglG~~lPlll~~~~~~~l~~--~~~~~~~~~~i~~i~G~lli~~Gi~~  265 (277)
                      +|++|++|.++|+++++.+.++..+  .++++||++++++++|++++.+|+++
T Consensus       167 ll~~Y~lGl~lP~~~~~~~~~~~~~~~~~~l~k~~~~i~~~~G~lli~~Gv~l  219 (220)
T COG0785         167 LLAAYALGLALPFLLLALLSGRALKAFSRKLRRHSGAIEIVGGALLILLGLLL  219 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999988754  78899999999999999999999875

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=99.97  E-value=4.8e-32  Score=263.40  Aligned_cols=255  Identities=30%  Similarity=0.424  Sum_probs=194.1

Q ss_pred             CCCCCCCCcccccceeeeccCCcccccccccccccchhhHHHhhhcccccchhhHHhhccccccccCcceeeeecccccc
Q 023793            4 NSNYFPSSQEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGY   83 (277)
Q Consensus         4 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~f~aGlltslsPC~l~~lp~~l~~   83 (277)
                      ..||||+|++++......+.....+     .=..+|..    .....+....+++.+|+.|++-.|+||++||+|+..+.
T Consensus       126 g~cypp~t~~~~~~~~~~a~~~~~~-----~~~~~~~~----~~~~~~~~~~~ll~afl~GLlL~ftPCVLPmlpl~s~~  196 (569)
T COG4232         126 GFCYPPETRRFDLSGVVAASAAPSA-----PPAAEQQE----GADSAATLKWSLLLAFLGGLLLNFTPCVLPMLPLLSGI  196 (569)
T ss_pred             ccccCCccceeecccccccccCCCC-----CCcccccc----cccccccCCHHHHHHHHHHHHHhhccHhhhhHHHHHHH
Confidence            3799999999998522222222111     01112221    12222333456889999999999999999999999988


Q ss_pred             ccccCCCCccceeecchhhhhhhHHHHHHHHhhhhhccccccccc-cC-CccchhhhhHHHhhchhHHHHHhhcCCccCC
Q 023793           84 IGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQI-GT-GLPLAASGLAIVMGLNLLEIIELQLPSFFDN  161 (277)
Q Consensus        84 i~~~~~~~~r~~~~~~~~~f~lG~~~ty~~LG~l~~~~G~~~~~~-~~-~~~~~~g~l~il~GL~ll~~~~~~~p~~~~~  161 (277)
                      +.+.+++.++++....+..|..|++++|+++|+.++..|..++.. |+ ++-....+++++++++|+|.+++++|+..+.
T Consensus       197 v~g~~~~~s~~ra~~Ls~~yv~~mALay~~lgl~~~~~gl~~q~qLQ~P~vl~~la~lf~llALSMfGlFelqlP~s~q~  276 (569)
T COG4232         197 VLGSAKRASKARAFGLSFVYVQGMALAYTLLGLVAAAAGLGWQAQLQQPWVLGGLAALFVLLALSMFGLFELQLPSSLQT  276 (569)
T ss_pred             HhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhHhHcccHHHHHHHHHHHHHHHHhhhheeecCcHHHhh
Confidence            776543444455566677888888899999999999988776532 22 3344556678999999999999999986543


Q ss_pred             -CChhhhhcCCChhHHHHHhhhhhhhccCCCChHHHHHHHHHHhhcCCCcccceeeeeeecchhHHHHHHHHHHHHHHHH
Q 023793          162 -FDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSL  240 (277)
Q Consensus       162 -~~~~~~~~~~~~~~~~fllG~~~gl~~~PC~~p~l~~iL~~a~~~g~~~~G~~ll~~fglG~~lPlll~~~~~~~l~~~  240 (277)
                       ++....+++.++..++|.+|++-+++.+||++|.+.+++.|+++++|+..|...+.++++|+++|+++++.+.+++   
T Consensus       277 ~l~~~S~~~~gG~~~GaF~mG~La~Lv~sPCt~ppLa~aL~Yiaqsg~~~~g~~~l~al~LGMg~Plllv~~f~~~~---  353 (569)
T COG4232         277 RLTQQSNRASGGSIVGAFFMGALAGLVVSPCTAPPLAGALLYIAQSGNALLGGLALYALGLGMGLPLLLIGVFGNRL---  353 (569)
T ss_pred             HHhhhhcccCCCchHHHHHHHHHHHHhcCcCcchhHHHHHHHHHhcchHHHHHHHHHHHHHhcccchhhheeccccc---
Confidence             3333333444558999999999999999999999999999999999999999999999999999999999988443   


Q ss_pred             Hhhccccccccc---ccchhhhcCchhhhhhhcccc
Q 023793          241 LSFRKFSSWINP---MSGALLLGGGLYTFLDRLFPT  273 (277)
Q Consensus       241 ~~~~~~~~~i~~---i~G~lli~~Gi~~ll~~~~~~  273 (277)
                        ++|.++|++.   +.|.+|++..+| ++.|++|.
T Consensus       354 --LPk~G~WM~~vK~~fGFvlLa~aiw-Ll~~~~~e  386 (569)
T COG4232         354 --LPKPGPWMNTVKQAFGFVLLATAIW-LLWRVLPE  386 (569)
T ss_pred             --CCCCCcHHHHHHHHHHHHHHHHHHH-HHHHHhhh
Confidence              5777777665   689999999999 78888876

>COG2836 Uncharacterized conserved protein [Function unknown]

Probab=99.85  E-value=5.7e-23  Score=179.24  Aligned_cols=203  Identities=24%  Similarity=0.304  Sum_probs=153.9

Q ss_pred             hHHhhccccccccCcceeeeeccccccccccCCCCccceeecchhhhhhhHHHHHHHHhhhhhccccccccc---cCCcc
Q 023793           57 LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQI---GTGLP  133 (277)
Q Consensus        57 l~~~f~aGlltslsPC~l~~lp~~l~~i~~~~~~~~r~~~~~~~~~f~lG~~~ty~~LG~l~~~~G~~~~~~---~~~~~  133 (277)
                      +..++++|++++ .||..+|-|+..++......+++++ .++.++.|++||++||+++|.+.+.+|..+++.   +....
T Consensus         6 ~l~~~~~g~lg~-gHC~gMCGGi~~afs~~~~~~~~~~-~~~~~~lyNlGRi~SYallG~i~G~lG~~l~~~~~~~~~l~   83 (232)
T COG2836           6 FLGIFLLGLLGG-GHCLGMCGGIVLAFSLLIPSKVSSS-RLKLHLLYNLGRILSYALLGAILGALGVSLGQSAGLRGVLF   83 (232)
T ss_pred             HHHHHHHHHhcC-ccHHHhcchHHHHHHHhccccchHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334788888776 5999999999988875543333322 278899999999999999999999999777643   45678


Q ss_pred             chhhhhHHHhhchhHHH-----HHhhcCCccCCCChhh---hhcCCChhHHHHHhhhhhhhccCCCChHHHHHHHHHHhh
Q 023793          134 LAASGLAIVMGLNLLEI-----IELQLPSFFDNFDPRA---AAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAT  205 (277)
Q Consensus       134 ~~~g~l~il~GL~ll~~-----~~~~~p~~~~~~~~~~---~~~~~~~~~~~fllG~~~gl~~~PC~~p~l~~iL~~a~~  205 (277)
                      +++|+++|++|+.++..     ...+.|...+++.+..   +..+.++..+++++|+++|+  .||.  ++++.++++..
T Consensus        84 i~ag~~li~lGL~l~~~~~~~~~~~~~p~i~~~~~~~l~~~r~l~~~~~~~~~~lG~~wG~--lPCG--lVYs~l~~A~~  159 (232)
T COG2836          84 IIAGALLIALGLYLLARGGMWSGALKLPFIGGFLWRLLKPIRLLPLKPLPGALFLGMLWGL--LPCG--LVYSALAYALS  159 (232)
T ss_pred             HHHHHHHHHHHHHHhcccchhhHHhhchhcchHHHHhhhhhhccccCcchHHHHHHHHhcc--cchH--HHHHHHHHHHH
Confidence            99999999999999522     2223444322221111   11244557899999999996  9995  77889999999


Q ss_pred             cCCCcccceeeeeeecchhHHHHHHHHHHHHHHHHHhhcccccccccccchhhhcCchhhhhhhc
Q 023793          206 SKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRL  270 (277)
Q Consensus       206 ~g~~~~G~~ll~~fglG~~lPlll~~~~~~~l~~~~~~~~~~~~i~~i~G~lli~~Gi~~ll~~~  270 (277)
                      ++|+.+|+++|++||+||..+++..+.+.+.+++.     .+++.+|.+|.+++.+|+|.++...
T Consensus       160 tgS~~~Gal~mlaFGlGTlP~ll~~G~~s~~~s~~-----~r~~~~rl~~gl~~v~g~~~l~~g~  219 (232)
T COG2836         160 TGSAFEGALVMLAFGLGTLPNLLAMGIFSSKLSKS-----SRKRLNRLSGGLMVVVGLIGLWKGL  219 (232)
T ss_pred             cCCHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHH-----HHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            99999999999999999988888899988887543     3456778888888888877665443

>PF13386 DsbD_2: Cytochrome C biogenesis protein transmembrane region

Probab=99.85  E-value=2.7e-23  Score=181.19  Aligned_cols=189  Identities=28%  Similarity=0.417  Sum_probs=135.5

Q ss_pred             hhccccccccCcceeeeeccccccccccCCCCccceeecchhhhhhhHHHHHHHHhhhhhcccccccccc--CCc----c
Q 023793           60 IFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIG--TGL----P  133 (277)
Q Consensus        60 ~f~aGlltslsPC~l~~lp~~l~~i~~~~~~~~r~~~~~~~~~f~lG~~~ty~~LG~l~~~~G~~~~~~~--~~~----~  133 (277)
                      +|+.|+++++ ||..+|.|+..++..++    +| +.+ ..+.|++||+++|+.+|++++.+|+.+.+..  +.+    .
T Consensus         2 a~~~Gl~gs~-hC~~mCg~~~~~~~~~~----~~-~~~-~~l~y~~GRi~sY~llG~l~g~~G~~l~~~~~~~~l~~~~~   74 (199)
T PF13386_consen    2 AFLLGLLGSL-HCIGMCGPIALALSLSQ----PK-RWL-RHLLYNLGRILSYTLLGALAGLLGSGLSLSGWLPGLRRIIG   74 (199)
T ss_pred             HHHHHHHHhh-hHHHhHHHHHHHHhccC----cc-cHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            6889999999 99999999999885431    22 224 5899999999999999999999999986432  233    3


Q ss_pred             chhhhhHHHhhchhHHHHHh-hcCCccCCCChhhhh-cCC-ChhHHHHHhhhhhhhccCCCChHHHHHHHHHHhhcCCCc
Q 023793          134 LAASGLAIVMGLNLLEIIEL-QLPSFFDNFDPRAAA-ANF-PSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPL  210 (277)
Q Consensus       134 ~~~g~l~il~GL~ll~~~~~-~~p~~~~~~~~~~~~-~~~-~~~~~~fllG~~~gl~~~PC~~p~l~~iL~~a~~~g~~~  210 (277)
                      ++.+.+++.+|+.++...+. +++...++..++..+ .++ ++..++|.+|+++|+  .||  |.++..+..++.++|+.
T Consensus        75 ~~~~~~~l~~gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~l~gl--lPC--g~~y~~l~~A~~s~s~~  150 (199)
T PF13386_consen   75 ILLGLLGLFLGLRLLGGPRLPKLGRLGHGLARRLQPLLRKLKGPWGAFLLGFLNGL--LPC--GPVYFALALAAASGSPL  150 (199)
T ss_pred             HHHHHHHHHHHHHHHhccchhhHHhccHHHHHHhHHHHHhcCCccHHHHHHHHHHH--hHH--HHHHHHHHHHHHcCChH
Confidence            44555555666666632111 111111111111111 122 677899999999998  799  35667777888999999


Q ss_pred             ccceeeeeeecchhHHHHHHHHHHHHHHHHHhhcccccccccccchhhhcCchh
Q 023793          211 IGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLY  264 (277)
Q Consensus       211 ~G~~ll~~fglG~~lPlll~~~~~~~l~~~~~~~~~~~~i~~i~G~lli~~Gi~  264 (277)
                      +|+++|++|++|+..|++.++...+.+++     +.+++..|++|+++++.|+|
T Consensus       151 ~G~l~m~~FgLGT~p~ll~~~~~~~~l~~-----~~~~~~~r~~g~~~i~~G~~  199 (199)
T PF13386_consen  151 YGALLMLAFGLGTLPALLLAGLLAGKLSR-----RLRRRLLRLAGVLLIILGIY  199 (199)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHC
Confidence            99999999999998888888877776643     33355566999999999987

>PRK10019 nickel/cobalt efflux protein RcnA; Provisional

Probab=98.33  E-value=2.6e-07  Score=84.64  Aligned_cols=212  Identities=18%  Similarity=0.203  Sum_probs=130.1

Q ss_pred             ccchhhHHhhccccccccCcceeeeeccccccccccCCCCccceeecchhhhhhhHHHHHHHHhhhhhcccccccc--cc
Q 023793           52 LSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQ--IG  129 (277)
Q Consensus        52 ~~~~~l~~~f~aGlltslsPC~l~~lp~~l~~i~~~~~~~~r~~~~~~~~~f~lG~~~ty~~LG~l~~~~G~~~~~--~~  129 (277)
                      .-|.-+...|+.|++-++.|==.=  .+..+|+..+  +++.++.+..++.-.++=+.+-.+++.+.-.+.+.+..  ..
T Consensus        12 ~~~~l~~~~f~yG~~HAlgPGHGK--avi~sYlv~~--~~~~~~a~~lgl~~~l~hta~~lv~~~~~~~l~~~~~~~~~~   87 (279)
T PRK10019         12 NAWFFIPSAILLGALHGLEPGHSK--TMMAAFIIAI--KGTIKQAVMLGLAATISHTAVVWLIAFGGMYLSRRFTAQSAE   87 (279)
T ss_pred             hHHHHHHHHHHHHHHHhcCCCcch--HHHhhhhhcC--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence            345667789999999999886543  2346777652  23444555555555555544444444443333444432  34


Q ss_pred             CCccchhhhhHHHhhchhHHH-HHhh--c---CCc--cCC---------------------------CChhh--------
Q 023793          130 TGLPLAASGLAIVMGLNLLEI-IELQ--L---PSF--FDN---------------------------FDPRA--------  166 (277)
Q Consensus       130 ~~~~~~~g~l~il~GL~ll~~-~~~~--~---p~~--~~~---------------------------~~~~~--------  166 (277)
                      .++..+.+++++.+|+.++-. .+-+  .   +..  -+.                           .+...        
T Consensus        88 ~~le~~S~~lii~lGl~ll~r~~r~~~~~~~~~h~~~h~h~h~h~h~~~c~~~~~~~~~~~~gh~h~~~~~~~~~a~~~r  167 (279)
T PRK10019         88 PWLQLISAVIIISTAFWMFWRTWRGERNWLENMHHHDHDHDHDHDHEHHHDHGHHHHHEHGATAEEYQDAHERAHANDIK  167 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCccCCCCCCCcCccccccccccccccccCCCCHHHhhccchhh
Confidence            577889999999999999832 1110  0   000  000                           00000        


Q ss_pred             -hh-cCCChhHHHHHhhhhhhhccCCCChHHHHHHHHHHhhcCCCcccceeeeeeecchhHHHHHHHHHHH-HHH-HHHh
Q 023793          167 -AA-ANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAG-ALQ-SLLS  242 (277)
Q Consensus       167 -~~-~~~~~~~~~fllG~~~gl~~~PC~~p~l~~iL~~a~~~g~~~~G~~ll~~fglG~~lPlll~~~~~~-~l~-~~~~  242 (277)
                       +. .+..+..+-+.+|+.-|+  .||++.++.  +..+.+-+++..|+.+.++|++|+.+-+..++.... ..+ ..++
T Consensus       168 ~~~~~~~~~~~~~l~igl~~Gl--~PCpgAl~V--LL~a~~lg~~~~Gi~~vlafslGtaltm~~vgll~~~~~r~~~~~  243 (279)
T PRK10019        168 RRFDGREVTNGQILLFGLTGGL--IPCPAAITV--LLICIQLKALTLGATLVLSFSIGLALTLVTVGVGAAISVQQAAKR  243 (279)
T ss_pred             hhhcccccccchhhHHHHHhcc--CCCHHHHHH--HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             00 000112233578888887  899877754  334556789999999999999999999998887663 233 2223


Q ss_pred             hcccccccc---cccchhhhcCchhhhhhhcc
Q 023793          243 FRKFSSWIN---PMSGALLLGGGLYTFLDRLF  271 (277)
Q Consensus       243 ~~~~~~~i~---~i~G~lli~~Gi~~ll~~~~  271 (277)
                      ..+..++++   .++|++.+++|+|+.++.+.
T Consensus       244 ~~~~~~~~~~~p~~s~~l~i~~G~~~~~~~~~  275 (279)
T PRK10019        244 WSGFNTLARRAPYFSSLLIGLVGVYMGVHGFM  275 (279)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333445555   89999999999998887653

>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed

Probab=97.99  E-value=1.2e-05  Score=70.95  Aligned_cols=167  Identities=20%  Similarity=0.181  Sum_probs=101.9

Q ss_pred             ecchhhhhhhHHHHHHHHhhhhhccccccc-cc-------cCCccchhhhhHHHhhchhHHHHHhhcCCcc-CCCChhh-
Q 023793           97 IGDSIAFSLGLATTLALLGVGASFAGKAYG-QI-------GTGLPLAASGLAIVMGLNLLEIIELQLPSFF-DNFDPRA-  166 (277)
Q Consensus        97 ~~~~~~f~lG~~~ty~~LG~l~~~~G~~~~-~~-------~~~~~~~~g~l~il~GL~ll~~~~~~~p~~~-~~~~~~~-  166 (277)
                      .++...|.+|...+|...|+..-...+... ..       ..++.++.|++++++|......-    |+.. ++..+|+ 
T Consensus        28 ~~~~~af~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lGv~ll~~a~~~~~~~----~~~~~~~~~~~~~  103 (214)
T PF11139_consen   28 RRNLLAFLAGWFLGYLAVGLVLLFGLDALPSGSSSAPSPVVGWLQLVLGVLLLLLAVRVWRRR----PRPDPPSRPPRWL  103 (214)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCccHHHHHHHHHHHHHHHHHHHHhhcc----cccCCCCCchhhh
Confidence            456899999999999999988776655543 11       11234556666666665544211    1111 1111121 


Q ss_pred             hhcCCChhHHHHHhhhhhhhccCCCChHHHHHHHHHHhhcCCCcccceeeeeeecchhHHHHHHHH----HHHHHHHHHh
Q 023793          167 AAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAAS----FAGALQSLLS  242 (277)
Q Consensus       167 ~~~~~~~~~~~fllG~~~gl~~~PC~~p~l~~iL~~a~~~g~~~~G~~ll~~fglG~~lPlll~~~----~~~~l~~~~~  242 (277)
                      .+.+.....+++.+|+..+++..+...|++.++.....++-++..-...+..|.+-+..|..+...    ...+.++  .
T Consensus       104 ~~~~~~~~~~~~~lg~~~~~~~~~~~~~~laa~~~I~~~~~~~~~~~~~l~~y~~i~~~~~~~pll~~~~~~~r~~~--~  181 (214)
T PF11139_consen  104 ARLDSASPGGAFWLGFVLGLANPKTMLPYLAAIAIIAASGLSPGTQVVALVVYCLIASLPALLPLLAYLVAPERAEP--W  181 (214)
T ss_pred             hhhhcCCchhHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--H
Confidence            122345567889999999998877776666665555555556677788888999998887765332    2222221  2


Q ss_pred             hccccccc----ccccchhhhcCchhhhhhh
Q 023793          243 FRKFSSWI----NPMSGALLLGGGLYTFLDR  269 (277)
Q Consensus       243 ~~~~~~~i----~~i~G~lli~~Gi~~ll~~  269 (277)
                      ++|.++|+    +.+..+++.++|++++.+.
T Consensus       182 l~r~~~wl~~~~~~i~~~i~~i~G~~l~~~G  212 (214)
T PF11139_consen  182 LERLRSWLRRHSRQILAVILLIVGALLLGDG  212 (214)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHHHHHHhh
Confidence            23333333    3467888888888876654

Currently no function for this family is known.

>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=97.35  E-value=0.00014  Score=66.80  Aligned_cols=202  Identities=22%  Similarity=0.234  Sum_probs=114.2

Q ss_pred             chhhHHhhccccccccCcceeeeeccccccccccCCCCccceeecchhhhhhhHHH-----HHHHHhhhhhcc-ccc--c
Q 023793           54 FTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLAT-----TLALLGVGASFA-GKA--Y  125 (277)
Q Consensus        54 ~~~l~~~f~aGlltslsPC~l~~lp~~l~~i~~~~~~~~r~~~~~~~~~f~lG~~~-----ty~~LG~l~~~~-G~~--~  125 (277)
                      |..+...|+-|.+-++.|=-.=.  +..+|+.+.+  .+    +++++.-++-..+     ....++++.+.. ++.  .
T Consensus        55 w~li~~SflyGvlHAlgPGHgKa--viasylia~~--~~----lk~~ilLsf~~sllqG~~Av~l~~~~~~v~~~~s~~~  126 (303)
T COG2215          55 WTLIPLSFLYGVLHALGPGHGKA--VIATYLIAHK--AT----LKRAILLSFLASLLQGLTAVVLLLAFLGVLRLSSITF  126 (303)
T ss_pred             HHHHHHHHHHHHHhccCCCcchH--HHHHHHHhcc--cc----hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHH
Confidence            56777899999999998875421  2356765522  11    2222222221111     112222222211 222  2


Q ss_pred             ccccCCccchhhhhHHHhhchhHHH--HHh--hcCCc--cC-------------------C--CChhhhhcCCChhHHHH
Q 023793          126 GQIGTGLPLAASGLAIVMGLNLLEI--IEL--QLPSF--FD-------------------N--FDPRAAAANFPSSVQAY  178 (277)
Q Consensus       126 ~~~~~~~~~~~g~l~il~GL~ll~~--~~~--~~p~~--~~-------------------~--~~~~~~~~~~~~~~~~f  178 (277)
                      .+...++.++..++++.+|+.++-.  .+.  +-|+.  ..                   .  .|++.. .+.......+
T Consensus       127 ~~s~~~lE~~S~~Ll~~~G~w~~~r~lr~l~~~~~~~~~~~~~~~~~~~h~H~~~~~Cgh~H~~d~~~~-~~~~~~~~~~  205 (303)
T COG2215         127 ALSEPWLELISFLLLILLGLWLLWRTLRRLRHRHPKHPHFAAHPHPDHDHDHHYQCACGHAHAPDPKRL-GQAVDWKQQW  205 (303)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccccCCCcccCCccccccccccccCCChHHh-cccccHHHHH
Confidence            2344577889999999999998821  111  11220  00                   0  011111 2223345668


Q ss_pred             HhhhhhhhccCCCChHHHHHHHHHHhhcCCCcccceeeeeeecchhHHHHHHHHHHHHHHHH-Hhhc-------cccccc
Q 023793          179 LAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSL-LSFR-------KFSSWI  250 (277)
Q Consensus       179 llG~~~gl~~~PC~~p~l~~iL~~a~~~g~~~~G~~ll~~fglG~~lPlll~~~~~~~l~~~-~~~~-------~~~~~i  250 (277)
                      ..|+..|+  .||++.+..  +..+-+-+....|++.-+++++|+.+++-..+...-..|+. .|..       |+.+.+
T Consensus       206 ~~~l~~GL--rPCpgAi~V--Llfal~~gl~~~Gil~VlamS~GtalTvs~lA~~av~ak~~a~~~~g~~~~~~~~~~~~  281 (303)
T COG2215         206 LFGLTGGL--RPCPGAIFV--LLFALSLGLYTLGILSVLAMSIGTALTVSALALLAVTAKNTAVRLSGFRTLAKRISYIV  281 (303)
T ss_pred             HHHHHhcC--ccCcHHHHH--HHHHHHhchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            88999997  999977743  44566667888999999999999999977766655444421 1111       223344


Q ss_pred             ccccchhhhcCchhhhhh
Q 023793          251 NPMSGALLLGGGLYTFLD  268 (277)
Q Consensus       251 ~~i~G~lli~~Gi~~ll~  268 (277)
                      +.+.|.+++.+|+..++.
T Consensus       282 ~l~~gli~l~~g~~~l~~  299 (303)
T COG2215         282 SLLGGLIGLYFGLHLLLG  299 (303)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            455677777777765554

>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine

Probab=96.73  E-value=0.00042  Score=59.40  Aligned_cols=164  Identities=21%  Similarity=0.230  Sum_probs=88.9

Q ss_pred             eecchhhhhhhHHHHHHHHhhhhhcccccc-c---cccCCccchhhhhHHHhhchhHHHHHhhcCCccCCCChhhhhcCC
Q 023793           96 IIGDSIAFSLGLATTLALLGVGASFAGKAY-G---QIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANF  171 (277)
Q Consensus        96 ~~~~~~~f~lG~~~ty~~LG~l~~~~G~~~-~---~~~~~~~~~~g~l~il~GL~ll~~~~~~~p~~~~~~~~~~~~~~~  171 (277)
                      .++.++...+|..+.......++...-..+ +   .....+.++.+..++.+|..++..-+    +.   .+++....++
T Consensus        22 G~~~~~~~~~G~~~~~~i~~~~~~~g~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~~~----~~---~~~~~~~~~~   94 (191)
T PF01810_consen   22 GFKAGLPVALGAALGDLIYILLAVFGLSALLKSSPWLFMILKLLGALYLLYLGYKLLRSKF----SS---KSSTQSEAKK   94 (191)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhccc----Cc---chhhhhhhcc
Confidence            345678888898888887766655433333 2   22344566777777888877762111    00   0000000112


Q ss_pred             ChhHHHHHhhhhhhhccCCCChHHHHHHHHHHhhcCCCccc-ceeeeeeecchhHHHHHHHHHHHHHHHHHhhccccccc
Q 023793          172 PSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIG-GTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWI  250 (277)
Q Consensus       172 ~~~~~~fllG~~~gl~~~PC~~p~l~~iL~~a~~~g~~~~G-~~ll~~fglG~~lPlll~~~~~~~l~~~~~~~~~~~~i  250 (277)
                      .+....|..|+...+ .-|=+-+...++........+.... ........++........+...++.++..+.++.+ ++
T Consensus        95 ~~~~~~f~~g~~~~~-~NPk~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~i  172 (191)
T PF01810_consen   95 QSKSKSFLTGFLLNL-LNPKAILFWLAVFPQFISPEYSSTQFLVFILGIFLGSLLWFLLLALLGSRLRRKFSSRRIR-WI  172 (191)
T ss_pred             ccHHHHHHHHHHHHH-HhHHHHHHHHHhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HH
Confidence            456677888888876 2444433333443332221111111 22222334444444455555555554433333344 99


Q ss_pred             ccccchhhhcCchhhhhh
Q 023793          251 NPMSGALLLGGGLYTFLD  268 (277)
Q Consensus       251 ~~i~G~lli~~Gi~~ll~  268 (277)
                      ++++|++++.+|++++++
T Consensus       173 ~~~~g~~li~~av~l~~~  190 (191)
T PF01810_consen  173 NRISGLLLIGFAVYLLYS  190 (191)
T ss_pred             HHHHHHHHHHHHHHHHHc
Confidence            999999999999998765

A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane

>COG0785 CcdA Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.61  E-value=0.0017  Score=57.75  Aligned_cols=90  Identities=26%  Similarity=0.267  Sum_probs=64.4

Q ss_pred             hhhHHhhcccccccc--CcceeeeeccccccccccCCCCccceeecchhhhhhhHHHHHHHHhhhhhcccc-c---cccc
Q 023793           55 TSLAVIFGAGLVTSL--SPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGK-A---YGQI  128 (277)
Q Consensus        55 ~~l~~~f~aGlltsl--sPC~l~~lp~~l~~i~~~~~~~~r~~~~~~~~~f~lG~~~ty~~LG~l~~~~G~-~---~~~~  128 (277)
                      .+..-.|..|+..++  +||..|.+...++....   +++-.+....-..|++|..+.|..++...+.+.+ .   +.++
T Consensus       124 ~~~~~~f~lGl~f~~~wtPC~gPil~sil~laa~---~~~~~~g~~ll~~Y~lGl~lP~~~~~~~~~~~~~~~~~~l~k~  200 (220)
T COG0785         124 VTALGAFLLGLLFALGWTPCIGPILGSILALAAS---TGSVVLGALLLAAYALGLALPFLLLALLSGRALKAFSRKLRRH  200 (220)
T ss_pred             CcchhHHHHHHHHHHHhccchhHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556666666654  69999887666655432   2222344566788999999999999998887766 2   3445


Q ss_pred             cCCccchhhhhHHHhhchh
Q 023793          129 GTGLPLAASGLAIVMGLNL  147 (277)
Q Consensus       129 ~~~~~~~~g~l~il~GL~l  147 (277)
                      ++.++++.|+++|++|+.+
T Consensus       201 ~~~i~~~~G~lli~~Gv~l  219 (220)
T COG0785         201 SGAIEIVGGALLILLGLLL  219 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            6678999999999999865

>PF02683 DsbD: Cytochrome C biogenesis protein transmembrane region; InterPro: IPR003834 DsbA and DsbC, periplasmic proteins of Escherichia coli, are two key players involved in disulphide bond formation

Probab=95.60  E-value=0.0023  Score=56.11  Aligned_cols=88  Identities=27%  Similarity=0.288  Sum_probs=61.3

Q ss_pred             HHhhcccccccc--CcceeeeeccccccccccCCCCccceeecchhhhhhhHHHHHHHHhhhhhccccc---cccccCCc
Q 023793           58 AVIFGAGLVTSL--SPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKA---YGQIGTGL  132 (277)
Q Consensus        58 ~~~f~aGlltsl--sPC~l~~lp~~l~~i~~~~~~~~r~~~~~~~~~f~lG~~~ty~~LG~l~~~~G~~---~~~~~~~~  132 (277)
                      ..+|..|+..++  +||+.|++-..+++...+   ++..+....-..|++|..+-+..++.......+.   ..+..+++
T Consensus       118 ~gaf~lG~~~~l~~~PC~~p~l~~il~~a~~~---~~~~~~~~ll~~y~lG~~lPll~~~~~~~~~~~~~~~~~~~~~~i  194 (211)
T PF02683_consen  118 LGAFLLGLLFGLVWSPCTGPILAAILALAASS---GSVLQGLLLLLAYGLGFGLPLLLIGLFSGSLLRRLRKLRRWSRWI  194 (211)
T ss_pred             ccHHHHHHHHHHHhhhcchHHHHHHHHHHHcC---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555554433  599999877777765432   2222345556789999999999998887765533   33445678


Q ss_pred             cchhhhhHHHhhchhH
Q 023793          133 PLAASGLAIVMGLNLL  148 (277)
Q Consensus       133 ~~~~g~l~il~GL~ll  148 (277)
                      +.+.|++++++|+.++
T Consensus       195 ~~~~G~lli~~g~~~l  210 (211)
T PF02683_consen  195 KRISGILLIALGLYLL  210 (211)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8999999999998764

DsbD generates a reducing source in the periplasm, which is required for maintaining proper redox conditions []. DipZ is essential for maintaining cytochrome c apoproteins in the correct conformations for the covalent attachment of haem groups to the appropriate pairs of cysteine residues [].; GO: 0017004 cytochrome complex assembly, 0055114 oxidation-reduction process, 0016020 membrane

>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional

Probab=95.41  E-value=0.0031  Score=54.94  Aligned_cols=163  Identities=19%  Similarity=0.136  Sum_probs=78.2

Q ss_pred             ecchhhhhhhHHHHHHHHhhhhhc-ccccccc---ccCCccchhhhhHHHhhchhHHHHHhhcCCccCCCChhhhhcCCC
Q 023793           97 IGDSIAFSLGLATTLALLGVGASF-AGKAYGQ---IGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFP  172 (277)
Q Consensus        97 ~~~~~~f~lG~~~ty~~LG~l~~~-~G~~~~~---~~~~~~~~~g~l~il~GL~ll~~~~~~~p~~~~~~~~~~~~~~~~  172 (277)
                      .+.+..+.+|..+.+...-.+... ++..+.+   ....++++.+.-++.+|..++..   + ++..+  ++ .  .+.+
T Consensus        36 ~r~~~~~~~G~~~g~~v~~~~~~~Gl~~l~~~~p~~~~~lk~~Ga~YL~~lg~~~~~s---~-~~~~~--~~-~--~~~~  106 (205)
T PRK10520         36 YRGAVASIAGLQTGLAIHIVLVGVGLGALFSQSLLAFEVLKWAGAAYLIWLGIQQWRA---A-GAIDL--HT-L--ASTQ  106 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhC---C-Ccccc--cc-c--cCCc
Confidence            345778888888877766544432 2223322   22345566666677788877632   1 11100  00 0  0112


Q ss_pred             hhHHHHHhhhhhhhccCCCChHHHHHHHHHHhhcCCCc-ccce-eeeeeecchhHHHHHHHHHHHHHHHHHhhccccccc
Q 023793          173 SSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPL-IGGT-LLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWI  250 (277)
Q Consensus       173 ~~~~~fllG~~~gl~~~PC~~p~l~~iL~~a~~~g~~~-~G~~-ll~~fglG~~lPlll~~~~~~~l~~~~~~~~~~~~i  250 (277)
                      +..+.|.-|+...+ .-|=+-.++.++.+.-...+++. .... +...+.+-...-....+...++.++..+.+|+.+++
T Consensus       107 ~~~~~f~~g~~~~l-~NPKailf~~a~~p~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~i  185 (205)
T PRK10520        107 SRRRLFKRAVFVNL-TNPKSIVFLAALFPQFIMPQQPQLMQYLVLGVTTVVVDIIVMIGYATLAQRIARWIKGPKQMKAL  185 (205)
T ss_pred             cHHHHHHHHHHHHh-hCcHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence            22345777777776 24443223333333222111111 1101 111111100011112222334444444555677899


Q ss_pred             ccccchhhhcCchhhhhhh
Q 023793          251 NPMSGALLLGGGLYTFLDR  269 (277)
Q Consensus       251 ~~i~G~lli~~Gi~~ll~~  269 (277)
                      ++++|.+++.+|+++.++|
T Consensus       186 ~~~~g~~li~~~~~l~~~~  204 (205)
T PRK10520        186 NKIFGSLFMLVGALLASAR  204 (205)
T ss_pred             HHHHHHHHHHHHHHHHhcc
Confidence            9999999999999877765

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=94.94  E-value=0.011  Score=59.74  Aligned_cols=91  Identities=20%  Similarity=0.224  Sum_probs=63.3

Q ss_pred             hHHHHHhhhhhhhccCCCChHHHHHHHHHHhhcC---CCcccceeeeeeecchhHHHHHHHHHHHHHHHHHhhccccccc
Q 023793          174 SVQAYLAGLTFALAASPCSTPVLATLLGYVATSK---DPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWI  250 (277)
Q Consensus       174 ~~~~fllG~~~gl~~~PC~~p~l~~iL~~a~~~g---~~~~G~~ll~~fglG~~lPlll~~~~~~~l~~~~~~~~~~~~i  250 (277)
                      ...+|+.|++..+  +||..|++-....+....+   +...+...-++|.+|+.+-+.++|...+.+.........++|+
T Consensus       169 l~~afl~Glll~l--~PCvlP~lpi~~~~~~~~~~~~~~~~~~~~~l~y~lG~~~ty~~lG~~a~~~G~~~~~~~q~~~~  246 (571)
T PRK00293        169 LLWFFLIGIGLAF--TPCVLPMYPILSGIVLGGKQRLSTARALLLSFVYVQGMALTYTLLGLVVAAAGLQFQAALQHPYV  246 (571)
T ss_pred             HHHHHHHHHHHhc--cchhhHhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            4668889988876  9999998765555554322   2334456678999999999888887776654222111235688


Q ss_pred             ccccchhhhcCchhhh
Q 023793          251 NPMSGALLLGGGLYTF  266 (277)
Q Consensus       251 ~~i~G~lli~~Gi~~l  266 (277)
                      ..+.+++++++|+.++
T Consensus       247 ~~~~~~l~v~lgL~~~  262 (571)
T PRK00293        247 LIGLSILFVLLALSMF  262 (571)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            8888999999888653

>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]

Probab=94.76  E-value=0.0071  Score=53.16  Aligned_cols=131  Identities=24%  Similarity=0.252  Sum_probs=63.9

Q ss_pred             CCccchhhhhHHHhhchhHHHHHhhcCCccCCCChhhhhcCCChhHHHHHhhhhhhhccCCCChHHHHHHHHHHhhcCCC
Q 023793          130 TGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDP  209 (277)
Q Consensus       130 ~~~~~~~g~l~il~GL~ll~~~~~~~p~~~~~~~~~~~~~~~~~~~~~fllG~~~gl~~~PC~~p~l~~iL~~a~~~g~~  209 (277)
                      +.+.++.+.-++-+|..++..-   -+..  + ++...+.+..+ .+.|.-|++..+ .-|=.--.+.+++......+..
T Consensus        73 ~~lk~~GaaYL~ylg~~~~ra~---~~~~--~-~~~~~~~~~~~-~~~f~~G~~~~l-~NPK~~lf~la~~pqfv~~~~~  144 (208)
T COG1280          73 TVLKLAGAAYLLYLGWKALRAG---GAAL--A-EEAAGAPSSSR-RKAFRRGLLVNL-LNPKAILFFLAFLPQFVDPGAG  144 (208)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcc---cccc--c-ccccccccchh-HHHHHHHHHHHh-hCcHHHHHHHHHHhhhcCCCCc
Confidence            3456666666777787766221   0110  0 11100011111 367888888887 3555433444555544432222


Q ss_pred             cccceeeeeeecchh---HHHHH-HHHHHHHHHHHHhhcccccccccccchhhhcCchhhhhhh
Q 023793          210 LIGGTLLLSYTTGYV---APLLL-AASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDR  269 (277)
Q Consensus       210 ~~G~~ll~~fglG~~---lPlll-~~~~~~~l~~~~~~~~~~~~i~~i~G~lli~~Gi~~ll~~  269 (277)
                      .. ...+...++.+.   .+... ........++..|.++..+|+++..|.+++..|++....+
T Consensus       145 ~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~G~~li~~g~~l~~~~  207 (208)
T COG1280         145 LV-LLQALILGLVFILVGFVVLALYALLAARLRRLLRRPRASRIINRLFGVLLIGFGVKLALSR  207 (208)
T ss_pred             hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            21 111111222221   11111 1122223333322267899999999999999999987654

>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type

Probab=93.01  E-value=0.059  Score=48.12  Aligned_cols=23  Identities=30%  Similarity=0.528  Sum_probs=17.6

Q ss_pred             ccccchhhhcCchhhhhhhcc-cc
Q 023793          251 NPMSGALLLGGGLYTFLDRLF-PT  273 (277)
Q Consensus       251 ~~i~G~lli~~Gi~~ll~~~~-~~  273 (277)
                      ....|-.|+..|+|++++.++ |+
T Consensus       160 p~~LG~~Mi~~GlyfLl~aliiPn  183 (224)
T PF09930_consen  160 PIILGNFMIFLGLYFLLSALIIPN  183 (224)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhh
Confidence            347899999999999865543 65

>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein

Probab=92.68  E-value=0.04  Score=46.95  Aligned_cols=159  Identities=15%  Similarity=0.174  Sum_probs=77.1

Q ss_pred             ecchhhhhhhHHHHHHHHhhhhhc-ccccccc---ccCCccchhhhhHHHhhchhHHHHHhhcCCccCCCChhhhhcCCC
Q 023793           97 IGDSIAFSLGLATTLALLGVGASF-AGKAYGQ---IGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFP  172 (277)
Q Consensus        97 ~~~~~~f~lG~~~ty~~LG~l~~~-~G~~~~~---~~~~~~~~~g~l~il~GL~ll~~~~~~~p~~~~~~~~~~~~~~~~  172 (277)
                      .++++.+.+|..+.....-.+... ++..+..   ....++++.+..++.+|..++..   +.+.. +..+++. ..+++
T Consensus        18 ~~~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~~---~~~~~-~~~~~~~-~~~~~   92 (185)
T TIGR00949        18 RRAGVLTILGIALGDAIWIVLSLLGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLRK---KSKKQ-SPAAQVE-LAEQT   92 (185)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHc---ccccc-ccccccc-cccCc
Confidence            455778888888877776555443 3334432   23455667777778888877631   11100 0000000 01112


Q ss_pred             hhHHHHHhhhhhhhccCCCChHHHHHHHHHHhhcCCCcccceeeeeeecchh----HHHHHHHHHHHHHHHHHhhccccc
Q 023793          173 SSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYV----APLLLAASFAGALQSLLSFRKFSS  248 (277)
Q Consensus       173 ~~~~~fllG~~~gl~~~PC~~p~l~~iL~~a~~~g~~~~G~~ll~~fglG~~----lPlll~~~~~~~l~~~~~~~~~~~  248 (277)
                      +..+.|.-|+...+ .-|=+-..+.++...-...+..   ......+..+..    .-....+....+.++.++.+|+.+
T Consensus        93 ~~~~~f~~g~~~~~-~NPk~ilf~~~i~~~f~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (185)
T TIGR00949        93 TWKKSFRRGLLTNL-SNPKAVLFFISIFSQFINPNTP---TWQLIVLGLTIIVETILWFYVLSLIFSRPAVRRKYSKQQK  168 (185)
T ss_pred             cHHHHHHHHHHHhc-cChHHHHHHHHHHHHHhCCCCc---hHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            23456888887775 2443322222333221111111   111122233321    111222222233333334557889


Q ss_pred             ccccccchhhhcCchh
Q 023793          249 WINPMSGALLLGGGLY  264 (277)
Q Consensus       249 ~i~~i~G~lli~~Gi~  264 (277)
                      ++|+++|++++.+|+.
T Consensus       169 ~in~~~g~~l~~~~v~  184 (185)
T TIGR00949       169 WIDGITGALFVGFGIR  184 (185)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999888864

>PRK09304 arginine exporter protein; Provisional

Probab=92.66  E-value=0.076  Score=46.41  Aligned_cols=162  Identities=14%  Similarity=0.034  Sum_probs=76.2

Q ss_pred             hhhhhhhHHHHHHHHhhhhhc-cccccccc---cCCccchhhhhHHHhhchhHHHHHhhcCCccCCCChhhhhcCCChhH
Q 023793          100 SIAFSLGLATTLALLGVGASF-AGKAYGQI---GTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSV  175 (277)
Q Consensus       100 ~~~f~lG~~~ty~~LG~l~~~-~G~~~~~~---~~~~~~~~g~l~il~GL~ll~~~~~~~p~~~~~~~~~~~~~~~~~~~  175 (277)
                      ++....|..+.......+... ++..+.+.   ...+.++.+.-++.+|..++..-+ + ++. + .+++.  .+.++..
T Consensus        36 ~~~~~~Gi~~g~~~~~~la~~Gl~~Ll~~~p~~~~~l~~~Ga~YLlyLg~~~~rs~~-~-~~~-~-~~~~~--~~~~~~~  109 (207)
T PRK09304         36 HLMIALLCALSDLVLICAGIFGGSALLMQSPWLLALVTWGGVAFLLWYGFGAFKTAM-S-SNI-E-LASAE--VMKQGRW  109 (207)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c-ccc-c-ccccc--ccCccHH
Confidence            566777777666655444322 22333332   233455555666778887763210 0 110 0 00000  1112334


Q ss_pred             HHHHhhhhhhhccCCCChHHHH--HHHHHHhhcCCCcccc-eeeeeeecchhHHHHHHHHHHHHHHHHHhhccccccccc
Q 023793          176 QAYLAGLTFALAASPCSTPVLA--TLLGYVATSKDPLIGG-TLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINP  252 (277)
Q Consensus       176 ~~fllG~~~gl~~~PC~~p~l~--~iL~~a~~~g~~~~G~-~ll~~fglG~~lPlll~~~~~~~l~~~~~~~~~~~~i~~  252 (277)
                      +.|.-|+...+ .-|=+  +++  ++......+.++.... ..+... .....-....+....+.++..+.+|+.+|+|+
T Consensus       110 ~~f~~G~~~~l-~NPKa--~lf~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~in~  185 (207)
T PRK09304        110 KIIATMLAVTW-LNPHV--YLDTFVVLGSLGGQLDVEPKRWFALGTI-SASFLWFFGLALLAAWLAPRLRTAKAQRIINL  185 (207)
T ss_pred             HHHHHHHHHHH-hCcHH--HHHHHHHHHHHHhccCcchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCchHHHHHHH
Confidence            56888888876 24443  322  2221111111221111 011110 01111111222333444444444567889999


Q ss_pred             ccchhhhcCchhhhhhhcc
Q 023793          253 MSGALLLGGGLYTFLDRLF  271 (277)
Q Consensus       253 i~G~lli~~Gi~~ll~~~~  271 (277)
                      ++|++++.+|++...+++.
T Consensus       186 ~~g~~l~~~~~~l~~~~~~  204 (207)
T PRK09304        186 FVGCVMWFIALQLARQGIA  204 (207)
T ss_pred             HHHHHHHHHHHHHHHhhhh
Confidence            9999999999998777653

>PRK10958 leucine export protein LeuE; Provisional

Probab=92.61  E-value=0.027  Score=49.53  Aligned_cols=27  Identities=19%  Similarity=0.135  Sum_probs=21.3

Q ss_pred             hhcccccccccccchhhhcCchhhhhh
Q 023793          242 SFRKFSSWINPMSGALLLGGGLYTFLD  268 (277)
Q Consensus       242 ~~~~~~~~i~~i~G~lli~~Gi~~ll~  268 (277)
                      +.+|+.+|+++++|.+++.+|+.+.++
T Consensus       184 ~~~~~~~~i~~~~g~~l~~~~i~l~~~  210 (212)
T PRK10958        184 RRKKLAAGGNSLVGLLFVGFAAKLATA  210 (212)
T ss_pred             hCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            345567899999999999999886543

>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC

Probab=92.35  E-value=0.02  Score=50.35  Aligned_cols=79  Identities=16%  Similarity=0.289  Sum_probs=52.0

Q ss_pred             ccccccCcceeeeeccccccccccCCCCccceeecchhhhhhhHHHHHHHHhhhhhccccccccccCCccchhhhhHHHh
Q 023793           64 GLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVM  143 (277)
Q Consensus        64 GlltslsPC~l~~lp~~l~~i~~~~~~~~r~~~~~~~~~f~lG~~~ty~~LG~l~~~~G~~~~~~~~~~~~~~g~l~il~  143 (277)
                      .+..-++|  +..+|.+++...+.+ .++|++..++...++....+.+...|-..-   +.++-..+.+++..|+++.++
T Consensus        10 ~lf~iinP--~g~ip~f~~lt~~~~-~~~r~~ia~~a~~~a~~ill~f~~~G~~iL---~~fgIsl~af~IaGGiiL~~i   83 (203)
T PF01914_consen   10 TLFAIINP--IGNIPIFLSLTKGMS-PKERRRIARRASIIAFIILLIFAFFGQLIL---NFFGISLPAFRIAGGIILFLI   83 (203)
T ss_pred             HHHHHHhH--HHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCCHHHHHHHHHHHHHHH
Confidence            34444554  345677777655433 455667777888888888888887773332   233322345789999999999


Q ss_pred             hchhH
Q 023793          144 GLNLL  148 (277)
Q Consensus       144 GL~ll  148 (277)
                      |+.|+
T Consensus        84 a~~ml   88 (203)
T PF01914_consen   84 ALEML   88 (203)
T ss_pred             HHHHh
Confidence            99988

These proteins may be transporters. ; GO: 0016021 integral to membrane

>PRK10995 inner membrane protein; Provisional

Probab=92.17  E-value=0.015  Score=51.63  Aligned_cols=81  Identities=19%  Similarity=0.258  Sum_probs=53.3

Q ss_pred             ccccccccCcceeeeeccccccccccCCCCccceeecchhhhhhhHHHHHHHHhhhhhccccccccccCCccchhhhhHH
Q 023793           62 GAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAI  141 (277)
Q Consensus        62 ~aGlltslsPC~l~~lp~~l~~i~~~~~~~~r~~~~~~~~~f~lG~~~ty~~LG~l~~~~G~~~~~~~~~~~~~~g~l~i  141 (277)
                      ..++..-.+|  +..+|++++...+.+ .++|++..++...+.....+.+...|-..-   +.++...+.+++..|+++.
T Consensus        12 ~~~lf~iinP--~g~~pif~~lt~~~~-~~~r~~ia~~~~~~a~~ill~f~~~G~~il---~~fgIs~~a~rIaGGilL~   85 (221)
T PRK10995         12 LVVLLPLANP--LTTVALFLGLSGNMT-PEERNRQALMASVYVFAIMMVAFYAGQLVM---STFGISIPGLRIAGGLIVA   85 (221)
T ss_pred             HHHHHHHhch--hhhHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCCCHHHHHHHHHHHHH
Confidence            3355556655  456788888765433 345666667777777777777766664332   3333333467899999999


Q ss_pred             HhhchhH
Q 023793          142 VMGLNLL  148 (277)
Q Consensus       142 l~GL~ll  148 (277)
                      .+|+.|+
T Consensus        86 ~igi~ml   92 (221)
T PRK10995         86 FIGFRML   92 (221)
T ss_pred             HHHHHHh
Confidence            9999997

>PRK11111 hypothetical protein; Provisional

Probab=89.61  E-value=0.049  Score=48.27  Aligned_cols=79  Identities=14%  Similarity=0.204  Sum_probs=53.0

Q ss_pred             cccccccCcceeeeeccccccccccCCCCccceeecchhhhhhhHHHHHHHHhh-hhhccccccccccCCccchhhhhHH
Q 023793           63 AGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGV-GASFAGKAYGQIGTGLPLAASGLAI  141 (277)
Q Consensus        63 aGlltslsPC~l~~lp~~l~~i~~~~~~~~r~~~~~~~~~f~lG~~~ty~~LG~-l~~~~G~~~~~~~~~~~~~~g~l~i  141 (277)
                      ..+..-++|  +..+|++++...+.+ .++|++..+++..+.....+.|...|- +..++|-..    ..+++..|+++.
T Consensus        15 ~~Lf~iinP--ig~ipiflslt~~~s-~~~r~~ia~~a~l~a~~ill~f~~~G~~iL~~fGIsl----~afrIaGGiiL~   87 (214)
T PRK11111         15 IGLFALVNP--VGILPVFISMTSHQT-AAERNKTNLTANLSVAIILLISLFLGDFILNLFGISI----DSFRIAGGILVV   87 (214)
T ss_pred             HHHHHHhCc--chhHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH----HHHHHHHHHHHH
Confidence            355556655  456788888765443 345666677777777777777777773 232333332    357889999999


Q ss_pred             HhhchhH
Q 023793          142 VMGLNLL  148 (277)
Q Consensus       142 l~GL~ll  148 (277)
                      .+|+.|+
T Consensus        88 ~ial~Ml   94 (214)
T PRK11111         88 TIAMSMI   94 (214)
T ss_pred             HHHHHHh
Confidence            9999997

>TIGR00427 membrane protein, MarC family

Probab=89.50  E-value=0.07  Score=46.82  Aligned_cols=79  Identities=15%  Similarity=0.275  Sum_probs=53.2

Q ss_pred             ccccccCcceeeeeccccccccccCCCCccceeecchhhhhhhHHHHHHHHhhhhhccccccccccCCccchhhhhHHHh
Q 023793           64 GLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVM  143 (277)
Q Consensus        64 GlltslsPC~l~~lp~~l~~i~~~~~~~~r~~~~~~~~~f~lG~~~ty~~LG~l~~~~G~~~~~~~~~~~~~~g~l~il~  143 (277)
                      .+..-++|  +..+|++++...+.+ .++|++..++...+.....+.|...|-..-   +.++-..+.+++..|+++...
T Consensus        13 ~Lf~iinP--ig~ipvfl~lt~~~~-~~~r~~ia~~~~l~a~~ill~f~~~G~~iL---~~fgIsl~afrIaGGiiL~~i   86 (201)
T TIGR00427        13 SLFAIINP--IGNIPIFISLTEYYT-AAERNKIAKKANISSFIILLIFLVFGDTIL---KLFGISIDAFRIAGGILLFTI   86 (201)
T ss_pred             HHHHHhCc--chHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCCHHHHHHHHHHHHHHH
Confidence            44455555  456788888765433 345666677787888888888888774322   333322345789999999999


Q ss_pred             hchhH
Q 023793          144 GLNLL  148 (277)
Q Consensus       144 GL~ll  148 (277)
                      |+.|+
T Consensus        87 a~~ml   91 (201)
T TIGR00427        87 AMDML   91 (201)
T ss_pred             HHHHh
Confidence            99997

MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.

>PRK10229 threonine efflux system; Provisional

Probab=89.39  E-value=0.11  Score=45.06  Aligned_cols=164  Identities=15%  Similarity=0.210  Sum_probs=76.3

Q ss_pred             ecchhhhhhhHHHHHHHHhhhhhc-ccccccc---ccCCccchhhhhHHHhhchhHHHHHhhcCCccCCCChhhhhcCCC
Q 023793           97 IGDSIAFSLGLATTLALLGVGASF-AGKAYGQ---IGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFP  172 (277)
Q Consensus        97 ~~~~~~f~lG~~~ty~~LG~l~~~-~G~~~~~---~~~~~~~~~g~l~il~GL~ll~~~~~~~p~~~~~~~~~~~~~~~~  172 (277)
                      .+.++...+|..........++.. ++..+.+   ..+.++++.+..++.+|..++..-+    +..+..++.. ..+.+
T Consensus        35 ~~~~~~~~~G~~~g~~i~~~l~~~Gl~~ll~~~p~~~~~l~~~Ga~yLlylg~~~~~~~~----~~~~~~~~~~-~~~~~  109 (206)
T PRK10229         35 RKEAMMGVLGITCGVMVWAGVALLGLHLILEKMAWLHTIIMVGGGLYLCWMGYQMLRGAL----KKEDVAAEEP-QVELA  109 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcc----cccccccccc-cccCc
Confidence            445777888888776665444322 2233332   2234555555666778877763210    0000000000 00112


Q ss_pred             hhHHHHHhhhhhhhccCCCChHHHHHHHHHHhhcCCCcccceeeeeeecchhH-HHHHHHHHHHHHH--HH-Hhhccccc
Q 023793          173 SSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVA-PLLLAASFAGALQ--SL-LSFRKFSS  248 (277)
Q Consensus       173 ~~~~~fllG~~~gl~~~PC~~p~l~~iL~~a~~~g~~~~G~~ll~~fglG~~l-Plll~~~~~~~l~--~~-~~~~~~~~  248 (277)
                      +..+.|.-|+...+ .-|=+-..+.+++..-... +.  +......+..+... -............  .. +..+|+.+
T Consensus       110 ~~~~~f~~G~l~~l-~NPka~lf~~ai~~~f~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (206)
T PRK10229        110 KSGRSFLKGLLTNL-SNPKAIIYFGSVFSLFVGD-NV--GAGARWGLFALIIVETLAWFTVVASLFALPQMRRGYQRLAK  185 (206)
T ss_pred             cHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHcCC-CC--cHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence            22356888888876 2555433444444422211 11  11111122222111 1111111111111  11 12346778


Q ss_pred             ccccccchhhhcCchhhhhhh
Q 023793          249 WINPMSGALLLGGGLYTFLDR  269 (277)
Q Consensus       249 ~i~~i~G~lli~~Gi~~ll~~  269 (277)
                      |+++++|++++.+|++.+++|
T Consensus       186 ~in~~~g~~li~~~i~l~~~~  206 (206)
T PRK10229        186 WIDGFAGALFAGFGIHLIISR  206 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999887654

>PF09948 DUF2182: Predicted metal-binding integral membrane protein (DUF2182); InterPro: IPR018688 This family of various hypothetical bacterial membrane proteins having predicted metal-binding properties has no known function

Probab=86.98  E-value=0.12  Score=44.99  Aligned_cols=143  Identities=15%  Similarity=0.155  Sum_probs=89.9

Q ss_pred             eecchhhhhhhHHHHHHHHhhhhhcccccccccc-------CCccchhhhhHHHhhchhHHHHHh------hcCCccCCC
Q 023793           96 IIGDSIAFSLGLATTLALLGVGASFAGKAYGQIG-------TGLPLAASGLAIVMGLNLLEIIEL------QLPSFFDNF  162 (277)
Q Consensus        96 ~~~~~~~f~lG~~~ty~~LG~l~~~~G~~~~~~~-------~~~~~~~g~l~il~GL~ll~~~~~------~~p~~~~~~  162 (277)
                      .......|..|-..+-...|+.+..+...+++..       +.-+++.+.++++.|++++.-.|-      +-|....  
T Consensus        35 ~~~~~~~f~~GYl~vW~~~g~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~Ll~AG~yQ~sp~K~~cL~~Cr~p~~f~--  112 (191)
T PF09948_consen   35 RARSTALFVAGYLAVWLAFGLVATALQWALHQLALLSPMMASASPWLAGAVLLAAGLYQFSPLKQACLNHCRSPLSFL--  112 (191)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhhhhhhHHHHHHHHHHHHHhccHHHHHHHHHCCCcchHh--
Confidence            3556788999999999999998877765554211       123567788889999998855432      2222110  


Q ss_pred             ChhhhhcCCChhHHHHHhhhhhhhccCCCChHHHHHHHHHHhhcCCCcccceeeeeeecchhHHHHHHHHHHHHHHHHHh
Q 023793          163 DPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLS  242 (277)
Q Consensus       163 ~~~~~~~~~~~~~~~fllG~~~gl~~~PC~~p~l~~iL~~a~~~g~~~~G~~ll~~fglG~~lPlll~~~~~~~l~~~~~  242 (277)
                      .    +.-+++..+++-+|+-.|+.-..|+-+.....+  +.               |.....-+..++.+. ..+   |
T Consensus       113 ~----~~wr~g~~~alr~Gl~hG~~CvGCCWaLMllmf--v~---------------G~mnl~wMa~lt~~~-~~E---K  167 (191)
T PF09948_consen  113 A----FHWRAGARGALRMGLRHGLYCVGCCWALMLLMF--VV---------------GVMNLAWMAALTALM-FAE---K  167 (191)
T ss_pred             h----cCCCcccchHHHHHHHHccHHHHHHHHHHHHHH--Hh---------------ccccHHHHHHHHHHH-HHH---H
Confidence            0    112345678999999999988888855543222  22               223222233332211 122   3


Q ss_pred             hcccccccccccchhhhcCchhh
Q 023793          243 FRKFSSWINPMSGALLLGGGLYT  265 (277)
Q Consensus       243 ~~~~~~~i~~i~G~lli~~Gi~~  265 (277)
                      ...+++++.+..|+.+++.|+..
T Consensus       168 ~~p~g~~l~r~~G~~l~~~g~~l  190 (191)
T PF09948_consen  168 LLPWGRRLSRAVGVALIVWGVLL  190 (191)
T ss_pred             hCCcchHHHHHHHHHHHHHHHHH
Confidence            46678899999999999988764

>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]

Probab=85.91  E-value=0.16  Score=44.75  Aligned_cols=76  Identities=18%  Similarity=0.309  Sum_probs=51.8

Q ss_pred             cccCcceeeeeccccccccccCCCCccceeecchhhhhhhHHHHHHHHhhhhhccccccccccCCccchhhhhHHHhhch
Q 023793           67 TSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLN  146 (277)
Q Consensus        67 tslsPC~l~~lp~~l~~i~~~~~~~~r~~~~~~~~~f~lG~~~ty~~LG~l~~~~G~~~~~~~~~~~~~~g~l~il~GL~  146 (277)
                      ...+|=  .-+|.+++.....+ .++|++..++...|.+.....|...|-..-   +.++-....+++..|+++..+|+.
T Consensus        16 ~i~dP~--G~ipvf~slt~~~~-~~~r~~v~~ra~i~a~~ill~f~~~G~~il---~~fgIsi~a~rIAGGilLf~ia~~   89 (203)
T COG2095          16 AIIDPI--GNLPVFISLTKGLS-PEERNRVALRASIIALLILLVFLLLGEGIL---RFFGISIDAFRIAGGILLFLIALR   89 (203)
T ss_pred             HHhCCC--chhHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCchhHHHHhhhHHHHHHHHH
Confidence            334553  23566666554433 356777788888999999998888885443   233322345789999999999999


Q ss_pred             hH
Q 023793          147 LL  148 (277)
Q Consensus       147 ll  148 (277)
                      ++
T Consensus        90 ml   91 (203)
T COG2095          90 ML   91 (203)
T ss_pred             Hh
Confidence            98

>PF03824 NicO: High-affinity nickel-transport protein; InterPro: IPR011541 High affinity nickel transporters are involved in the incorporation of nickel into H2-uptake hydrogenase [, ] and urease [] enzymes and are essential for the expression of catalytically active hydrogenase and urease

Probab=85.45  E-value=0.44  Score=43.60  Aligned_cols=65  Identities=18%  Similarity=0.229  Sum_probs=45.7

Q ss_pred             hhhHHhhccccccccCcceeeeeccccccccccCCCCccceeecchhhhhhhHHHHHHHHhhhhhcccccccc
Q 023793           55 TSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQ  127 (277)
Q Consensus        55 ~~l~~~f~aGlltslsPC~l~~lp~~l~~i~~~~~~~~r~~~~~~~~~f~lG~~~ty~~LG~l~~~~G~~~~~  127 (277)
                      ..+.++|+.|+.=++.|=-.-.+  +.+|...      +++..++++.+.+|-.++-...++++..+...+.+
T Consensus         3 ~ll~laf~~G~~HAl~PgH~kai--~~~~~~~------~~~~~~~g~~~~lg~s~~~~~~ai~lv~~~~~~~~   67 (282)
T PF03824_consen    3 SLLLLAFLYGLLHALGPGHGKAI--IASYLLS------SRRALRVGLFFGLGHSLTHGLSAILLVLLALWLSE   67 (282)
T ss_pred             HHHHHHHHHHHHHccCCChHHHH--HHHHHhh------cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            35668899999999988765543  4455432      22346778999999999888888887766655543

Ion uptake is dependent on proton motive force. HoxN in Ralstonia eutropha (Alcaligenes eutrophus) is thought to be an integral membrane protein with seven transmembrane helices []. The family also includes a cobalt transporter. ; GO: 0046872 metal ion binding, 0030001 metal ion transport, 0055085 transmembrane transport, 0016021 integral to membrane

>PF13386 DsbD_2: Cytochrome C biogenesis protein transmembrane region

Probab=85.04  E-value=0.13  Score=44.65  Aligned_cols=82  Identities=24%  Similarity=0.183  Sum_probs=54.3

Q ss_pred             hhHHhhccccccccCcceeeeeccccccccccCCCCccceeecchhhhhhhHHHHHHHHhhhhhccccccccccCCccch
Q 023793           56 SLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLA  135 (277)
Q Consensus        56 ~l~~~f~aGlltslsPC~l~~lp~~l~~i~~~~~~~~r~~~~~~~~~f~lG~~~ty~~LG~l~~~~G~~~~~~~~~~~~~  135 (277)
                      .....|..|++.++.||. ++.........    +.+-.+....-..|.+|.......+|.....+++...   +.+..+
T Consensus       117 ~~~~~~~lG~l~gllPCg-~~y~~l~~A~~----s~s~~~G~l~m~~FgLGT~p~ll~~~~~~~~l~~~~~---~~~~r~  188 (199)
T PF13386_consen  117 GPWGAFLLGFLNGLLPCG-PVYFALALAAA----SGSPLYGALLMLAFGLGTLPALLLAGLLAGKLSRRLR---RRLLRL  188 (199)
T ss_pred             CccHHHHHHHHHHHhHHH-HHHHHHHHHHH----cCChHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence            445678889999999996 33333221111    2233344566778999998888888888877666543   233447


Q ss_pred             hhhhHHHhhc
Q 023793          136 ASGLAIVMGL  145 (277)
Q Consensus       136 ~g~l~il~GL  145 (277)
                      .+.+++++|+
T Consensus       189 ~g~~~i~~G~  198 (199)
T PF13386_consen  189 AGVLLIILGI  198 (199)
T ss_pred             HHHHHHHHHH
Confidence            8888888875

>TIGR00948 2a75 L-lysine exporter

Probab=80.47  E-value=0.95  Score=38.30  Aligned_cols=147  Identities=15%  Similarity=0.073  Sum_probs=66.9

Q ss_pred             hhhhhhhHHHHHHHHhhhhhcc-cccccc---ccCCccchhhhhHHHhhchhHHHHHhhcCCccCCCChhhhhcCCChhH
Q 023793          100 SIAFSLGLATTLALLGVGASFA-GKAYGQ---IGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSV  175 (277)
Q Consensus       100 ~~~f~lG~~~ty~~LG~l~~~~-G~~~~~---~~~~~~~~~g~l~il~GL~ll~~~~~~~p~~~~~~~~~~~~~~~~~~~  175 (277)
                      ++...+|..+.....-.+.... +..+..   ..+.+.++.+..++.+|..++..-+ +.+.  + .+..  ..+.++..
T Consensus        22 g~~~~~G~~~g~~i~~~~~~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~~~~r~~~-~~~~--~-~~~~--~~~~~~~~   95 (177)
T TIGR00948        22 VLLIVALCCICDLVLIAAGVFGVAALLAASPILLAVLTWGGALFLLWYGFLAAKTAW-RGPG--A-LVPD--EPKKMGLK   95 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccc--c-cccc--cccccCHH
Confidence            6777888887666665444322 223332   2334566666667788887763211 1000  0 0000  01112334


Q ss_pred             HHHHhhhhhhhccCCCChHHHHHHHHHHhhcCCCcccceeeeeeecchhH-HHHH---HHHHHHHHHHHHhhcccccccc
Q 023793          176 QAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVA-PLLL---AASFAGALQSLLSFRKFSSWIN  251 (277)
Q Consensus       176 ~~fllG~~~gl~~~PC~~p~l~~iL~~a~~~g~~~~G~~ll~~fglG~~l-Plll---~~~~~~~l~~~~~~~~~~~~i~  251 (277)
                      +.|.-|+...+ .-|=+...+.++......+ .....   ...+.++... .++.   .+...++.++..+.+|..+|++
T Consensus        96 ~~f~~G~~~~l-~NPKa~lf~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~i~  170 (177)
T TIGR00948        96 KVLAMTLAVTL-LNPHVYLDTVVLIGALGLQ-FSDLL---RWLFAAGAIAASLVWFASLAFGAARLSPLLASPKVWRIIN  170 (177)
T ss_pred             HHHHHHHHHHH-hCchHHHHHHHHHHhhhhc-cCcch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHH
Confidence            56888888886 3555422221222211111 11111   1122332221 1111   2223333444444556778899


Q ss_pred             cccchh
Q 023793          252 PMSGAL  257 (277)
Q Consensus       252 ~i~G~l  257 (277)
                      +++|++
T Consensus       171 ~~~g~~  176 (177)
T TIGR00948       171 LVVAVV  176 (177)
T ss_pred             HHHhhc
Confidence            988865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00