Citrus Sinensis ID: 023803

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------
Protein Sequence
MAASSKVIGPETHMLNEDWTIVLPRRGKQRRNLRRIRSPEEQQKPWFPTEIESDPHRVSKLLQRIEMSIKKMESSEFYRTLLDQIQTPEVLNSFYNVLGSESNMQMVIYGIGCLESYGPPRLQLSLAILMKRKFSWIGDIEVFDPILSSTEARVLEALGCSVLSVNEQGRRCAIKPTLFYMPHCEAELYNNLLQANWGAMLKQMVLFGNSFEMYHQHVLEFKGSIVVDTARHILAARRFTHEFGIKTVSDDYFAGFHDSSWLFFRPDLESELQPKEI
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccHHHHHHHHHccccccccEEEEEEcccccccccHHHHHHHHHHHHHHccccccEEEEcccccHHHHHHHHHcccEEEEEcccccccccccEEEEcccccHHHHHHHHHHHHHcccccEEEEccccHHHHHHHHccccccccccHHHHHHHHcccEEEccccccccccccccccEEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccEEEEccccHHHcccccccccHHcccccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccHHHHHHHHHHHcccccEEEEEEEcccccccHHHHHHHHHHHHHHHHccccccEEEEcccccHHHHHHHHHcccEEEEcccccccEccccEEEEcccccHHHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHcccHHHHHcHHHHHHHHHHHHcccccccccHHHHHHccccEEEcccccccccccccc
Coil and Loop (DISEMBL)
maasskvigpethmlnedwtivlprrgkqrrnlrrirspeeqqkpwfpteiesdpHRVSKLLQRIEMSIKKMESSEFYRTLLDQIQTPEVLNSFYNVLGSESNMQMVIYGIGclesygpprLQLSLAILMKRKfswigdievfdpilsSTEARVLEALGCSVlsvneqgrrcaikptlfymphCEAELYNNLLQANWGAMLKQMVLFGNSFEMYHQHVLEFKGSIVVDTARHILAARRFTHefgiktvsddyfagfhdsswlffrpdleselqpkei
Flexible Loop (DISEMBL)
maasskvigpethmlnedwtivlprrgkqrrnlrrirspeeqqkpwfpteiesdphrVSKLLQRIEMSIKKMESSEFYRTLLDQIQTPEVLNSFYNVLGSESNMQMVIYGIGCLESYGPPRLQLSLAILMKRKFSWIGDIEVFDPILSSTEARVLEALGcsvlsvneqGRRCAIKPTLFYMPHCEAELYNNLLQANWGAMLKQMVLFGNSFEMYHQHVLEFKGSIVVDTARHILAARRFTHEFGIKTVSDDYFAGFHDSSWLFFRPDLESELQPKEI
Low Complexity Region (SEG)
MAASSKVIGPETHMLNEDWTIVLPRRGKQRRNLRRIRSPEEQQKPWFPTEIESDPHRVSKLLQRIEMSIKKMESSEFYRTLLDQIQTPEVLNSFYNVLGSESNMQMVIYGIGCLESYGPPRLQLSLAILMKRKFSWIGDIEVFDPILSSTEARVLEALGCSVLSVNEQGRRCAIKPTLFYMPHCEAELYNNLLQANWGAMLKQMVLFGNSFEMYHQHVLEFKGSIVVDTARHILAARRFTHEFGIKTVSDDYFAGFHDSSWLFFRPDLESELQPKEI
Disordered region (IsUnstruct)
**************LNEDWTIVL****************************************************EFYRTLLDQIQTPEVLNSFYNVLGSESNMQMVIYGIGCLESYGPPRLQLSLAILMKRKFSWIGDIEVFDPILSSTEARVLEALGCSVLSVNEQGRRCAIKPTLFYMPHCEAELYNNLLQANWGAMLKQMVLFGNSFEMYHQHVLEFKGSIVVDTARHILAARRFTHEFGIKTVSDDYFAGFHDSSWLFFR************
Disordered Region (DISOPRED)
**********************************************************SKLLQRIEMSIKKMESSEFYRTLLDQIQTPE**********SESNMQMVIYGIGCLESYGPPRLQLSLAILMKRKFSWIGDIEVFDPILSSTEARVLEALGCSVLSVNEQGRRCAIKPTLFYMPHCEAELYNNLLQANWGAMLKQMVLFGNSFEMYHQHVLEFK*SIVVDTARHILAARRFTHEFGIKTVSDDYFAGFHDSSWLFFRPDLE********
Disordered Region (DISEMBL)
MAASSKVIGPETHMLNEDWTIVLPRRGKQRRNLRRIRSPEEQQKPWFPTEIESDPHRVSKLLQRIEMSIKKMESSEFYRTLLDQIQTPEVLNSFYNVLGSESNMQMVIYGIGCLESYGPPRLQLSLAILMKRKFSWIGDIEVFDPILSSTEARVLEALGCSVLSVNEQGRRCAIKPTLFYMPHCEAELYNNLLQANWGAMLKQMVLFGNSFEMYHQHVLEFKGSIVVDTARHILAARRFTHEFGIKTVSDDYFAGFHDSSWLFFRPDLE********
Disordered Region (DISPRO)
***********T****EDWTIVLPRR*********************PTEIESDPHRVSKLLQRIEMSIKKMESSEFYRTLLDQIQTPEVLNSFYNVLGSESNMQMVIYGIGCLESYGPPRLQLSLAILMKRKFSWIGDIEVFDPILSSTEARVLEALGCSVLSVNEQGRRCAIKPTLFYMPHCEAELYNNLLQANWGAMLKQMVLFGNSFEMYHQHVLEFKGSIVVDTARHILAARRFTHEFGIKTVSDDYFAGFHDSSWLFFRPD**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAASSKVIGPETHMLNEDWTIVLPRRGKQRRNLRRIRSPEEQQKPWFPTEIESDPHRVSKLLQRIEMSIKKMESSEFYRTLLDQIQTPEVLNSFYNVLGSESNMQMVIYGIGCLESYGPPRLQLSLAILMKRKFSWIGDIEVFDPILSSTEARVLEALGCSVLSVNEQGRRCAIKPTLFYMPHCEAELYNNLLQANWGAMLKQMVLFGNSFEMYHQHVLEFKGSIVVDTARHILAARRFTHEFGIKTVSDDYFAGFHDSSWLFFRPDLESELQPKEI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	277	2.2.26 [Sep-21-2011]
Q8GWZ6	275	Protein SENSITIVITY TO RE	yes	no	0.913	0.92	0.571	5e-82
Q8K2M3	249	SRR1-like protein OS=Mus	yes	no	0.628	0.698	0.329	2e-19
Q9UH36	339	SRR1-like protein OS=Homo	yes	no	0.404	0.330	0.4	3e-15
Q9VEB5	276	SRR1-like protein OS=Dros	yes	no	0.667	0.670	0.257	2e-09
O60093	251	SRR1-like protein OS=Schi	yes	no	0.548	0.605	0.257	6e-05

>sp|Q8GWZ6|SRR1_ARATH Protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Arabidopsis thaliana GN=SRR1 PE=2 SV=2

 Score =  304 bits (778), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 148/259 (57%), Positives = 194/259 (74%), Gaps = 6/259 (2%)

Query: 18  DWTIVLPRRGKQ--RRNLRRIRSPEEQQKPWFPTEIESDPHRVSKLLQRIEMSIKKMESS 75
           +W +VLP +G+Q  RR  +     EE+++PW   ++E DP R ++L Q++E+S+KK+ESS
Sbjct: 13  EWKVVLPSKGRQGRRRKPKPKGQAEEEEQPWKSDDLEIDPQRQARLKQKMEISLKKIESS 72

Query: 76  EFYRTLLDQIQTPEVLNSFYNVLGSESNMQMVIYGIGCLESYGPPRLQLSLAILMKRKFS 135
            FY   L+Q+++PEV N    VLGSE+ +QMV+YGIG +ESY  PR QLS+AILMKR+F 
Sbjct: 73  SFYTAFLEQLKSPEVSNQIRLVLGSETQLQMVMYGIGSIESYESPRFQLSIAILMKREFD 132

Query: 136 WIGD-IEVFDPILSSTEARVLEALGCSVLSVNEQGRRCAIKPTLFYMPHCEAELYNNLLQ 194
           W+GD IEVFDP+LS+TE+  LE+LGCSVLSVNEQ RR A+KPTLF+MPHCEA LY+NLLQ
Sbjct: 133 WVGDNIEVFDPVLSATESSYLESLGCSVLSVNEQARREALKPTLFFMPHCEANLYSNLLQ 192

Query: 195 ANWGA-MLKQMVLFGNSFEMYHQHVLEFKGSIVVDTARHILAARRFTHEFGIKTVSDDYF 253
           ANW    L ++ LFGNSF+MY + V  F   ++  T R I+AA+R T EF I+T SDDYF
Sbjct: 193 ANWRMDRLSKIALFGNSFQMYEEQV-SFDAEVICATKR-IIAAQRVTSEFAIETESDDYF 250

Query: 254 AGFHDSSWLFFRPDLESEL 272
           A FHDSSW FF   ++SEL
Sbjct: 251 AAFHDSSWHFFSSGIDSEL 269

Probable regulator involved in a circadian clock input pathway, which is required for normal oscillator function. Regulates the expression of clock-regulated genes such as CCA1 and TOC1. Involved in both the phytochrome B (PHYB) and PHYB-independent signaling pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8K2M3|SRR1L_MOUSE SRR1-like protein OS=Mus musculus GN=Srrd PE=2 SV=4

 Score = 96.7 bits (239), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 103/197 (52%), Gaps = 23/197 (11%)

Query: 33  LRRIRSPEEQQK--PWFPTEIESDPHRVSKLLQRIEMSIKKMESSEFYRTLLDQIQTPEV 90
           LRR+R  EE  +   +  + +E+    + K L++++   + +       +L    Q P  
Sbjct: 43  LRRLREAEEDLRISDFCSSALETITECLRKQLEQLQPLTEALGRLHLGSSLPSASQEP-- 100

Query: 91  LNSFYNVLGSESNMQMVIYGIGCLESYGPPRLQLSLAIL------MKRKFSWIGDIEVFD 144
                 +  S S+++ V YG+G   S    R+QL+  +L      + R   W     V+D
Sbjct: 101 ------LASSASHVKCVCYGLGTFASCPTARIQLAFMLLFLEKCQVPRSHCW-----VYD 149

Query: 145 PILSSTEARVLEALGCSVLSVNEQGRRCAI-KPTLFYMPHCEAELYNNLLQANWGA-MLK 202
           P+ S TE  VL +LG +VLS NE+G+R    +PT+FYMPHC   LYNNLL +NW A  L 
Sbjct: 150 PLFSQTEVSVLTSLGVTVLSENEEGKRSVQGQPTVFYMPHCGTALYNNLLWSNWSADALS 209

Query: 203 QMVLFGNSFEMYHQHVL 219
           ++++ GNSF    + +L
Sbjct: 210 RVLIIGNSFRGLEERLL 226

May be involved in a circadian clock input pathway.

Mus musculus (taxid: 10090)

>sp|Q9UH36|SRR1L_HUMAN SRR1-like protein OS=Homo sapiens GN=SRRD PE=2 SV=1

 Score = 82.4 bits (202), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/125 (40%), Positives = 70/125 (56%), Gaps = 13/125 (10%)

Query: 103 NMQMVIYGIGCLESYGPPRLQLSLAIL------MKRKFSWIGDIEVFDPILSSTEARVLE 156
           +++ V YGIG   +    R QL+  +L      + R   W     V+DP+ S  E  VL 
Sbjct: 138 HLKCVCYGIGNFATCIVARNQLTFLLLLLEKCQIPRSHCW-----VYDPLFSQLEIEVLN 192

Query: 157 ALGCSVLSVNEQGRRCAI-KPTLFYMPHCEAELYNNLLQANWGA-MLKQMVLFGNSFEMY 214
            LG +VLS NE+G+R    +PT+FYM HC   LYNNLL +NW    L +MV+ GNSF+  
Sbjct: 193 TLGVTVLSENEEGKRSIRGEPTIFYMLHCGTALYNNLLWSNWSVDALSKMVIIGNSFKGL 252

Query: 215 HQHVL 219
            + +L
Sbjct: 253 EERLL 257

May be involved in a circadian clock input pathway.

Homo sapiens (taxid: 9606)

>sp|Q9VEB5|SRR1L_DROME SRR1-like protein OS=Drosophila melanogaster GN=CG7988 PE=1 SV=1

 Score = 63.2 bits (152), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 89/198 (44%), Gaps = 13/198 (6%)

Query: 17  EDWTIVLPRRGKQRRNLRRIRSPEEQQKPWFPTEIESDPHRVSKLLQRIEMSIKKMESSE 76
           ED+ +V  ++   R+ LRR R   + +  +    I+     V K   R+E    +M  S+
Sbjct: 6   EDFQVVTRKKWMARKCLRR-RDRHKSESDYL---IDCPDVNVEKFQPRLENLCTEMCQSD 61

Query: 77  FYRTLLDQIQTPEVLNSFYNVLGSESNMQMVIYGIGCLESYGPPRLQLSLAILMKRKFSW 136
           ++   ++ +Q  + L      L      ++V  G+G          Q +  I + R    
Sbjct: 62  YFLVAMEALQ--QQLEGIRKPLE-----RIVCLGLGPFSRTYHALHQAAFVIGLHRHHK- 113

Query: 137 IGDIEVFDPILSSTEARVLEALGCSVLSVNEQGRRCAIKPTLFYMPHCEAELYNNLLQAN 196
           I +   FDP+   +E  ++      ++S +  G+  A  PTL+Y+PHC   L +N+L +N
Sbjct: 114 IREALYFDPVFRDSEKELIRLFDGCIMSKDCAGKHEATVPTLYYLPHCPYALMHNILWSN 173

Query: 197 WG-AMLKQMVLFGNSFEM 213
           W    L  + L  NSFEM
Sbjct: 174 WKRETLPNVFLISNSFEM 191

Possible regulator involved in a circadian clock input pathway.

Drosophila melanogaster (taxid: 7227)

>sp|O60093|SRR1L_SCHPO SRR1-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC14C8.13 PE=3 SV=1

 Score = 48.1 bits (113), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 15/167 (8%)

Query: 49  TEIESDPHRVSKLLQRIEMSIKKMESSEFYRTLLDQIQTPEVLNSFYNVLGSESNMQMVI 108
           T+ ++D      L ++++ S +K+E SEF +++  Q      L+ F + +      + +I
Sbjct: 27  TQGDTDLWSQDTLQRKLDNSREKLEYSEFLKSVQSQ------LSEFKDPIH-----KCII 75

Query: 109 YGIGCLESYGPPRLQLSLAILMKRKFSWIGDI-EVFDPILSSTEARVLEALGCSVLSVNE 167
            G+G + +     LQLSL   + + F+        +DP     +   LE  G  VL   +
Sbjct: 76  LGLGRIHTLTA-SLQLSLFFEIMKIFNLQPRFCSFYDPAFLKDDVEFLENKGFCVLP--D 132

Query: 168 QGRRCAIKPTLFYMPHCEAELYNNLLQANWGAMLKQMVLFGNSFEMY 214
                 +K TL YMPHC   LY   L A      +  ++ GN+ ++Y
Sbjct: 133 PPTPSCLKYTLLYMPHCPTSLYETWLAAYVNDDPRHFIMCGNNLQLY 179

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
255559808	276	Protein SENSITIVITY TO RED LIGHT REDUCED	0.978	0.981	0.664	1e-107
225435979	269	PREDICTED: protein SENSITIVITY TO RED LI	0.953	0.981	0.675	1e-103
147767126	269	hypothetical protein VITISV_012927 [Viti	0.953	0.981	0.671	1e-102
224053272	277	predicted protein [Populus trichocarpa]	0.978	0.978	0.659	1e-101
224075838	277	predicted protein [Populus trichocarpa]	0.978	0.978	0.648	1e-100
296083950	260	unnamed protein product [Vitis vinifera]	0.920	0.980	0.649	1e-97
356541561	276	PREDICTED: protein SENSITIVITY TO RED LI	0.974	0.978	0.626	3e-93
356518322	276	PREDICTED: protein SENSITIVITY TO RED LI	0.974	0.978	0.622	1e-92
449452014	277	PREDICTED: protein SENSITIVITY TO RED LI	0.981	0.981	0.602	6e-91
357456685	277	Protein SENSITIVITY TO RED LIGHT REDUCED	0.981	0.981	0.594	7e-90

>gi|255559808|ref|XP_002520923.1| Protein SENSITIVITY TO RED LIGHT REDUCED, putative [Ricinus communis] gi|223539889|gb|EEF41468.1| Protein SENSITIVITY TO RED LIGHT REDUCED, putative [Ricinus communis]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 182/274 (66%), Positives = 231/274 (84%), Gaps = 3/274 (1%)

Query: 1   MAASSKVIGPETHMLNEDWTIVLPRRGKQRRNLRRIRSPEEQQKPWFPTEIESDPHRVSK 60
           M AS+K++  + H  N +WT+VLPR GK+ RN  +IR+PEEQQ+PW P ++ESD +R SK
Sbjct: 1   MDASAKILTVDNHTCNGEWTVVLPR-GKRSRNFSKIRTPEEQQQPWVPADLESDSNRQSK 59

Query: 61  LLQRIEMSIKKMESSEFYRTLLDQIQTPEVLNSFYNVLGSESNMQMVIYGIGCLESYGPP 120
           L++++ + +KK+E+S+FY+TLL+QIQTPE L+SF+ VLGSE  MQMVIYGIG +ESY  P
Sbjct: 60  LIEKMNICMKKVENSQFYQTLLEQIQTPESLDSFHKVLGSELKMQMVIYGIGSIESYETP 119

Query: 121 RLQLSLAILMKRKFSWIGDIEVFDPILSSTEARVLEALGCSVLSVNEQGRRCAIKPTLFY 180
           R+QLS+AILMK++FSWIGDIEVFDP+LS+TE+RVLEALGCSVLSVNE GRRC  +PTLFY
Sbjct: 120 RIQLSVAILMKKEFSWIGDIEVFDPVLSATESRVLEALGCSVLSVNEHGRRCVTRPTLFY 179

Query: 181 MPHCEAELYNNLLQANWGA-MLKQMVLFGNSFEMYHQHVLEFKGSIVVDTARHILAARRF 239
           MPHCEAELYNNLLQANW   +L ++ LFGNSFE+Y Q++ EF+ S +VD++RHI+A R F
Sbjct: 180 MPHCEAELYNNLLQANWRVELLNRIALFGNSFEVY-QYLSEFRNSTIVDSSRHIVAVREF 238

Query: 240 THEFGIKTVSDDYFAGFHDSSWLFFRPDLESELQ 273
           THE+ IKTVSDDYFA FHDSSW FF PD ++ELQ
Sbjct: 239 THEYVIKTVSDDYFAAFHDSSWHFFSPDPKTELQ 272

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435979|ref|XP_002271597.1| PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Vitis vinifera]

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/265 (67%), Positives = 214/265 (80%), Gaps = 1/265 (0%)

Query: 1   MAASSKVIGPETHMLNEDWTIVLPRRGKQRRNLRRIRSPEEQQKPWFPTEIESDPHRVSK 60
           MAAS+K I  E+     DWT+VLPRRGK+RRN  + + PE+ Q+PW PT++E D HR SK
Sbjct: 1   MAASAKTITLESSDAISDWTVVLPRRGKRRRNFLKSKHPEQHQQPWAPTDLEMDLHRESK 60

Query: 61  LLQRIEMSIKKMESSEFYRTLLDQIQTPEVLNSFYNVLGSESNMQMVIYGIGCLESYGPP 120
           L+Q+I++ I+K+ +S FY  LLDQ+QTP +L +F  VLGSE  MQMV+YGIG +ESY PP
Sbjct: 61  LMQKIQICIRKLGNSTFYHVLLDQVQTPHMLEAFLRVLGSELKMQMVVYGIGSIESYEPP 120

Query: 121 RLQLSLAILMKRKFSWIGDIEVFDPILSSTEARVLEALGCSVLSVNEQGRRCAIKPTLFY 180
           RLQLSLAIL+KRKFSWIGDI+VFDPILS+TE+RVLEALGCSVLSVNEQGRR A KPTLF+
Sbjct: 121 RLQLSLAILLKRKFSWIGDIKVFDPILSATESRVLEALGCSVLSVNEQGRRQASKPTLFF 180

Query: 181 MPHCEAELYNNLLQANWGA-MLKQMVLFGNSFEMYHQHVLEFKGSIVVDTARHILAARRF 239
           MPHCEAELY+NLLQ NW    +  +VLFGNSF  Y QHV EF+ S +VD++RHILA R+F
Sbjct: 181 MPHCEAELYDNLLQENWRTERMNNIVLFGNSFGTYEQHVSEFRSSTLVDSSRHILAVRKF 240

Query: 240 THEFGIKTVSDDYFAGFHDSSWLFF 264
           T EF IKTVSDDYF  FHDSSW FF
Sbjct: 241 TREFAIKTVSDDYFGAFHDSSWHFF 265

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767126|emb|CAN76600.1| hypothetical protein VITISV_012927 [Vitis vinifera]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/265 (67%), Positives = 212/265 (80%), Gaps = 1/265 (0%)

Query: 1   MAASSKVIGPETHMLNEDWTIVLPRRGKQRRNLRRIRSPEEQQKPWFPTEIESDPHRVSK 60
           MAAS+K I  E+     DWT+VLP RGK RRN  + + PE+ Q+PW PT++E D HR SK
Sbjct: 1   MAASAKTITLESSDAISDWTVVLPXRGKXRRNFLKSKHPEQHQQPWAPTDLEMDLHRESK 60

Query: 61  LLQRIEMSIKKMESSEFYRTLLDQIQTPEVLNSFYNVLGSESNMQMVIYGIGCLESYGPP 120
           L+Q+I++ I+K+ +S FY  LLDQ+QTP +L +F  VLGSE  MQMV+YGIG +ESY PP
Sbjct: 61  LMQKIQICIRKLGNSTFYHVLLDQVQTPHMLEAFLRVLGSELKMQMVVYGIGSIESYEPP 120

Query: 121 RLQLSLAILMKRKFSWIGDIEVFDPILSSTEARVLEALGCSVLSVNEQGRRCAIKPTLFY 180
           RLQLSLAIL+KRKFSWIGDI+VFDPILS+TE+RVLEALGCSVLSVNEQGRR A KPTLF+
Sbjct: 121 RLQLSLAILLKRKFSWIGDIKVFDPILSATESRVLEALGCSVLSVNEQGRRQASKPTLFF 180

Query: 181 MPHCEAELYNNLLQANWGA-MLKQMVLFGNSFEMYHQHVLEFKGSIVVDTARHILAARRF 239
           MPHCEAELY+NLLQ NW    +  +VLFGNSF  Y QHV EF+ S +VD++RHILA R+F
Sbjct: 181 MPHCEAELYDNLLQENWRTERMNNIVLFGNSFGTYEQHVSEFRSSTLVDSSRHILAVRKF 240

Query: 240 THEFGIKTVSDDYFAGFHDSSWLFF 264
           T EF IKTVSDDYF  FHDSSW FF
Sbjct: 241 TREFAIKTVSDDYFGAFHDSSWHFF 265

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053272|ref|XP_002297744.1| predicted protein [Populus trichocarpa] gi|222845002|gb|EEE82549.1| predicted protein [Populus trichocarpa]

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 180/273 (65%), Positives = 218/273 (79%), Gaps = 2/273 (0%)

Query: 1   MAASSKVIGPETHMLNEDWTIVLPRRGKQRRNLRRIRSPEEQQKPWFPTEIESDPHRVSK 60
           MAAS+K+   + H  NEDWT+VLPRRGK+R   RR  +PE +Q+PW PTE+ESDP R  K
Sbjct: 1   MAASAKLPVTDKHTKNEDWTVVLPRRGKRRTCSRRNSTPEAKQQPWVPTELESDPDRELK 60

Query: 61  LLQRIEMSIKKMESSEFYRTLLDQIQTPEVLNSFYNVLGSESNMQMVIYGIGCLESYGPP 120
           L+Q++E+ IKK+ESS+FY+  L+ ++ P++LNSF+ VLG E  M MVIYGIG +ESY  P
Sbjct: 61  LIQKMEICIKKVESSQFYQNFLELVENPDILNSFHKVLGLELEMPMVIYGIGSIESYETP 120

Query: 121 RLQLSLAILMKRKFSWIGDIEVFDPILSSTEARVLEALGCSVLSVNEQGRRCAIKPTLFY 180
           R QLSLAILMKRKF+WIGD+EVFDPILS+TE+RVLE+LGCSVLSVNEQGRR A KPTLFY
Sbjct: 121 RFQLSLAILMKRKFNWIGDVEVFDPILSATESRVLESLGCSVLSVNEQGRRRATKPTLFY 180

Query: 181 MPHCEAELYNNLLQANWG-AMLKQMVLFGNSFEMYHQHVLEFKGSIVVDTARHILAARRF 239
           MPHCEAELYNNLLQANW   +L  +VLFGNSFEMY + + E K S +VD+  HILAAR+F
Sbjct: 181 MPHCEAELYNNLLQANWELELLNHIVLFGNSFEMY-EFLSEIKNSFIVDSTGHILAARKF 239

Query: 240 THEFGIKTVSDDYFAGFHDSSWLFFRPDLESEL 272
             E  +K  SDDYFA FHDSSW FF P L++EL
Sbjct: 240 ADEHVLKIASDDYFAAFHDSSWHFFSPALDTEL 272

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075838|ref|XP_002304791.1| predicted protein [Populus trichocarpa] gi|222842223|gb|EEE79770.1| predicted protein [Populus trichocarpa]

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/273 (64%), Positives = 217/273 (79%), Gaps = 2/273 (0%)

Query: 1   MAASSKVIGPETHMLNEDWTIVLPRRGKQRRNLRRIRSPEEQQKPWFPTEIESDPHRVSK 60
           M AS+K++  +    NE+WT+V+PRRGK+R +  R  +PE +Q+PW PTE+ESDP R +K
Sbjct: 1   MTASAKLLALDKPSQNENWTVVMPRRGKKRIHSLRHNTPEAEQQPWVPTELESDPEREAK 60

Query: 61  LLQRIEMSIKKMESSEFYRTLLDQIQTPEVLNSFYNVLGSESNMQMVIYGIGCLESYGPP 120
           L+Q++E  IKK+ESS FY+  L+Q++ PE+L+SF+ VLG E  M MVIYGIG +ESY  P
Sbjct: 61  LIQKMEFCIKKVESSRFYQNFLEQVENPEILDSFHRVLGFELKMPMVIYGIGSIESYETP 120

Query: 121 RLQLSLAILMKRKFSWIGDIEVFDPILSSTEARVLEALGCSVLSVNEQGRRCAIKPTLFY 180
           R QLSLAILMKRKF WIGDIEVFDPILS+TE+RVLE+LGCSVLSVNEQGRR A KP LFY
Sbjct: 121 RFQLSLAILMKRKFCWIGDIEVFDPILSATESRVLESLGCSVLSVNEQGRRRATKPMLFY 180

Query: 181 MPHCEAELYNNLLQANWG-AMLKQMVLFGNSFEMYHQHVLEFKGSIVVDTARHILAARRF 239
           MPHCEA LYNNLLQANW   +L  +VLFGNSFEMY +   E K SIVV++  H+LAAR+F
Sbjct: 181 MPHCEAGLYNNLLQANWELELLNHIVLFGNSFEMY-EFFSEIKNSIVVESTMHVLAARKF 239

Query: 240 THEFGIKTVSDDYFAGFHDSSWLFFRPDLESEL 272
            +E+ IKT SDDYFA FHDSSW FF P L++EL
Sbjct: 240 ANEYVIKTASDDYFAAFHDSSWHFFSPALDTEL 272

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083950|emb|CBI24338.3| unnamed protein product [Vitis vinifera]

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 172/265 (64%), Positives = 209/265 (78%), Gaps = 10/265 (3%)

Query: 1   MAASSKVIGPETHMLNEDWTIVLPRRGKQRRNLRRIRSPEEQQKPWFPTEIESDPHRVSK 60
           MAAS+K I  E+     DWT+VLPRRGK+RRN  + + PE+ Q+PW PT++E D HR SK
Sbjct: 1   MAASAKTITLESSDAISDWTVVLPRRGKRRRNFLKSKHPEQHQQPWAPTDLEMDLHRESK 60

Query: 61  LLQRIEMSIKKMESSEFYRTLLDQIQTPEVLNSFYNVLGSESNMQMVIYGIGCLESYGPP 120
           L+Q+I++ I+K+ +S FY  LLDQ+QTP +L +F         ++MV+YGIG +ESY PP
Sbjct: 61  LMQKIQICIRKLGNSTFYHVLLDQVQTPHMLEAF---------LRMVVYGIGSIESYEPP 111

Query: 121 RLQLSLAILMKRKFSWIGDIEVFDPILSSTEARVLEALGCSVLSVNEQGRRCAIKPTLFY 180
           RLQLSLAIL+KRKFSWIGDI+VFDPILS+TE+RVLEALGCSVLSVNEQGRR A KPTLF+
Sbjct: 112 RLQLSLAILLKRKFSWIGDIKVFDPILSATESRVLEALGCSVLSVNEQGRRQASKPTLFF 171

Query: 181 MPHCEAELYNNLLQANWGA-MLKQMVLFGNSFEMYHQHVLEFKGSIVVDTARHILAARRF 239
           MPHCEAELY+NLLQ NW    +  +VLFGNSF  Y QHV EF+ S +VD++RHILA R+F
Sbjct: 172 MPHCEAELYDNLLQENWRTERMNNIVLFGNSFGTYEQHVSEFRSSTLVDSSRHILAVRKF 231

Query: 240 THEFGIKTVSDDYFAGFHDSSWLFF 264
           T EF IKTVSDDYF  FHDSSW FF
Sbjct: 232 TREFAIKTVSDDYFGAFHDSSWHFF 256

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541561|ref|XP_003539243.1| PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1-like [Glycine max]

 Score =  347 bits (890), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 171/273 (62%), Positives = 211/273 (77%), Gaps = 3/273 (1%)

Query: 1   MAASSKVIGPETHMLNEDWTIVLPRRGKQRRNLRRIRSPEEQQKPWFPTEIESDPHRVSK 60
           MAAS K +  +    NE WT+VLPRR +QRR   +    EE+Q+PW PT+ ++DP + + 
Sbjct: 1   MAASEKTLTNKC-TTNEGWTVVLPRRSRQRRKATKSGVLEEKQEPWTPTDSQTDPSKEAT 59

Query: 61  LLQRIEMSIKKMESSEFYRTLLDQIQTPEVLNSFYNVLGSESNMQMVIYGIGCLESYGPP 120
           L+Q++E  I ++E SEFY T  DQIQT  V++ F  VLGSE  MQMVIYGIG ++ Y PP
Sbjct: 60  LVQKMERCINRIERSEFYHTFRDQIQT-SVVDYFNRVLGSEIKMQMVIYGIGSIKLYEPP 118

Query: 121 RLQLSLAILMKRKFSWIGDIEVFDPILSSTEARVLEALGCSVLSVNEQGRRCAIKPTLFY 180
           RLQLSLAILM+R FSWIG+IEVFDPILS+TE+RVLEALGCSV+S+NE GRR A+KPT+F+
Sbjct: 119 RLQLSLAILMRRDFSWIGNIEVFDPILSATESRVLEALGCSVMSINEHGRREALKPTMFF 178

Query: 181 MPHCEAELYNNLLQANWG-AMLKQMVLFGNSFEMYHQHVLEFKGSIVVDTARHILAARRF 239
           MPHCEAELYNNLLQANW   +LK MVLFGNSFE Y QHV   K S ++++  HILAA+ F
Sbjct: 179 MPHCEAELYNNLLQANWKLNLLKNMVLFGNSFETYEQHVSLCKNSPILNSMGHILAAQGF 238

Query: 240 THEFGIKTVSDDYFAGFHDSSWLFFRPDLESEL 272
           T+EF I+TVSDDY+  FHDSSW FF P LE+EL
Sbjct: 239 TNEFRIQTVSDDYYNAFHDSSWHFFSPLLETEL 271

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518322|ref|XP_003527828.1| PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1-like [Glycine max]

 Score =  345 bits (884), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 170/273 (62%), Positives = 210/273 (76%), Gaps = 3/273 (1%)

Query: 1   MAASSKVIGPETHMLNEDWTIVLPRRGKQRRNLRRIRSPEEQQKPWFPTEIESDPHRVSK 60
           MAAS K +  +    NE WT+VLPRR +QRR   +    EE+Q+PW PT+ ++DP + + 
Sbjct: 1   MAASEKTLTNKC-TTNEGWTVVLPRRSRQRRKATKSGVLEEKQEPWTPTDSQTDPSKEAT 59

Query: 61  LLQRIEMSIKKMESSEFYRTLLDQIQTPEVLNSFYNVLGSESNMQMVIYGIGCLESYGPP 120
           L+Q++E  I ++E SEFY T  DQIQT  V++ F  VLGSE  MQMVIYGIG ++ Y PP
Sbjct: 60  LVQKMERCINRIEGSEFYHTFRDQIQT-SVVDYFNRVLGSEIKMQMVIYGIGSIKLYEPP 118

Query: 121 RLQLSLAILMKRKFSWIGDIEVFDPILSSTEARVLEALGCSVLSVNEQGRRCAIKPTLFY 180
           RLQLSLAILM+R  SWIG+IEVFDPILS+TE+RVLEALGCSV+S+NE GRR A+KPT+F+
Sbjct: 119 RLQLSLAILMRRDLSWIGNIEVFDPILSATESRVLEALGCSVMSINEHGRREALKPTMFF 178

Query: 181 MPHCEAELYNNLLQANWG-AMLKQMVLFGNSFEMYHQHVLEFKGSIVVDTARHILAARRF 239
           MPHCEAELYNNLLQANW   +LK MVLFGNSFE Y QHV   K S ++++  HILAA+ F
Sbjct: 179 MPHCEAELYNNLLQANWKLNLLKNMVLFGNSFETYEQHVSLCKNSPILNSMGHILAAQGF 238

Query: 240 THEFGIKTVSDDYFAGFHDSSWLFFRPDLESEL 272
           T+EF I+TVSDDY+  FHDSSW FF P LE+EL
Sbjct: 239 TNEFRIQTVSDDYYNAFHDSSWHFFSPLLETEL 271

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452014|ref|XP_004143755.1| PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1-like [Cucumis sativus] gi|449518749|ref|XP_004166398.1| PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1-like [Cucumis sativus]

 Score =  340 bits (871), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 165/274 (60%), Positives = 209/274 (76%), Gaps = 2/274 (0%)

Query: 1   MAASSKVIGPETHMLNEDWTIVLPRRGKQRRNLRRIRSPEEQQKPWFPTEIESDPHRVSK 60
           MAAS+K +       + DWT+VLPRRGKQ++   ++R  E+Q + W PT+  +D  R SK
Sbjct: 1   MAASAKTVSIPDQSNSGDWTVVLPRRGKQKKTFPKLRIREDQ-RTWSPTDQANDTIRESK 59

Query: 61  LLQRIEMSIKKMESSEFYRTLLDQIQTPEVLNSFYNVLGSESNMQMVIYGIGCLESYGPP 120
           LLQ++E+ IKK+E+S+FY+TL+++++T   L S   VLGSES M MV+YG+G +E+Y  P
Sbjct: 60  LLQKMEICIKKLENSQFYQTLVEELETMPFLESLNRVLGSESKMGMVVYGVGSIENYENP 119

Query: 121 RLQLSLAILMKRKFSWIGDIEVFDPILSSTEARVLEALGCSVLSVNEQGRRCAIKPTLFY 180
           RLQLSLAIL+KRKFSWI  +EVFDPILS+TE R++E+ GCSVLS NEQGRRCA KPT+F+
Sbjct: 120 RLQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSFNEQGRRCAEKPTMFF 179

Query: 181 MPHCEAELYNNLLQANWG-AMLKQMVLFGNSFEMYHQHVLEFKGSIVVDTARHILAARRF 239
           MPHCEAELYNNLLQ NW   +L  +VLFGNSFE+Y Q V EFK S VVD+++ ILA+R+F
Sbjct: 180 MPHCEAELYNNLLQENWKVGLLNHIVLFGNSFEIYEQFVSEFKNSPVVDSSKFILASRKF 239

Query: 240 THEFGIKTVSDDYFAGFHDSSWLFFRPDLESELQ 273
             E  IKTVSDDYF  FHDSSW FF P    ELQ
Sbjct: 240 IREIKIKTVSDDYFGAFHDSSWQFFSPVSPLELQ 273

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357456685|ref|XP_003598623.1| Protein SENSITIVITY TO RED LIGHT REDUCED [Medicago truncatula] gi|355487671|gb|AES68874.1| Protein SENSITIVITY TO RED LIGHT REDUCED [Medicago truncatula]

 Score =  336 bits (861), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 163/274 (59%), Positives = 208/274 (75%), Gaps = 2/274 (0%)

Query: 1   MAASSKVIGPETHMLNEDWTIVLPRRGKQRRNLRRIRSPEEQQKPWFPTEIESDPHRVSK 60
           MA+S+K +       +EDWT+VLPRRG+Q+R    ++  EE+Q+PW PT+ ++DP R + 
Sbjct: 1   MASSAKTLTNSNCTTDEDWTVVLPRRGRQKRKAPEVKILEEKQEPWAPTDSQTDPGRETA 60

Query: 61  LLQRIEMSIKKMESSEFYRTLLDQIQTPEVLNSFYNVLGSESNMQMVIYGIGCLESYGPP 120
           L+Q++E  I K+E+S+FY+T  DQ++T  VL+    VLGSE+ MQMVIYGIG +E Y PP
Sbjct: 61  LMQKMERHISKIENSQFYQTFRDQVET-SVLDYIPKVLGSETTMQMVIYGIGSIELYEPP 119

Query: 121 RLQLSLAILMKRKFSWIGDIEVFDPILSSTEARVLEALGCSVLSVNEQGRRCAIKPTLFY 180
            LQLS+A+LMKR F+WIG IEVFDPI+S TE+ VLEALGCSV+S+NE G+R A+KPT+F+
Sbjct: 120 CLQLSIAMLMKRDFNWIGSIEVFDPIISVTESHVLEALGCSVMSINEHGKREALKPTMFF 179

Query: 181 MPHCEAELYNNLLQANWGA-MLKQMVLFGNSFEMYHQHVLEFKGSIVVDTARHILAARRF 239
           MPHCEAELY NLL+ANW   +LK MVLFGNSFE Y QHV   K S V+    HILAAR F
Sbjct: 180 MPHCEAELYCNLLRANWKPNLLKNMVLFGNSFEAYEQHVSLCKTSPVMYLVGHILAARSF 239

Query: 240 THEFGIKTVSDDYFAGFHDSSWLFFRPDLESELQ 273
           T+E  I+TVSDDY+  FHDSSW FF P  E+ELQ
Sbjct: 240 TNEVKIETVSDDYYNAFHDSSWHFFSPVHETELQ 273

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
TAIR|locus:2148333	275	SRR1 "AT5G59560" [Arabidopsis	0.913	0.92	0.571	1e-75
ZFIN|ZDB-GENE-060825-269	274	srrd "SRR1 domain containing"	0.700	0.708	0.309	3.9e-21
MGI|MGI:1917368	249	Srrd "SRR1 domain containing"	0.646	0.718	0.333	1.7e-20
UNIPROTKB|Q9UH36	339	SRRD "SRR1-like protein" [Homo	0.671	0.548	0.316	6.7e-17
FB|FBgn0038582	276	CG7988 [Drosophila melanogaste	0.664	0.666	0.266	1.5e-09
POMBASE|SPBC14C8.13	251	SPBC14C8.13 "SRR1 family prote	0.548	0.605	0.263	7.4e-05

TAIR|locus:2148333 SRR1 "AT5G59560" [Arabidopsis thaliana (taxid:3702)]

 Score = 763 (273.6 bits), Expect = 1.0e-75, P = 1.0e-75
 Identities = 148/259 (57%), Positives = 194/259 (74%)

Query:    18 DWTIVLPRRGKQ--RRNLRRIRSPEEQQKPWFPTEIESDPHRVSKLLQRIEMSIKKMESS 75
             +W +VLP +G+Q  RR  +     EE+++PW   ++E DP R ++L Q++E+S+KK+ESS
Sbjct:    13 EWKVVLPSKGRQGRRRKPKPKGQAEEEEQPWKSDDLEIDPQRQARLKQKMEISLKKIESS 72

Query:    76 EFYRTLLDQIQTPEVLNSFYNVLGSESNMQMVIYGIGCLESYGPPRLQLSLAILMKRKFS 135
              FY   L+Q+++PEV N    VLGSE+ +QMV+YGIG +ESY  PR QLS+AILMKR+F 
Sbjct:    73 SFYTAFLEQLKSPEVSNQIRLVLGSETQLQMVMYGIGSIESYESPRFQLSIAILMKREFD 132

Query:   136 WIGD-IEVFDPILSSTEARVLEALGCSVLSVNEQGRRCAIKPTLFYMPHCEAELYNNLLQ 194
             W+GD IEVFDP+LS+TE+  LE+LGCSVLSVNEQ RR A+KPTLF+MPHCEA LY+NLLQ
Sbjct:   133 WVGDNIEVFDPVLSATESSYLESLGCSVLSVNEQARREALKPTLFFMPHCEANLYSNLLQ 192

Query:   195 ANWGA-MLKQMVLFGNSFEMYHQHVLEFKGSIVVDTARHILAARRFTHEFGIKTVSDDYF 253
             ANW    L ++ LFGNSF+MY + V  F   ++  T R I+AA+R T EF I+T SDDYF
Sbjct:   193 ANWRMDRLSKIALFGNSFQMYEEQV-SFDAEVICATKR-IIAAQRVTSEFAIETESDDYF 250

Query:   254 AGFHDSSWLFFRPDLESEL 272
             A FHDSSW FF   ++SEL
Sbjct:   251 AAFHDSSWHFFSSGIDSEL 269

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0007623 "circadian rhythm" evidence=IMP

GO:0009585 "red, far-red light phototransduction" evidence=IMP

GO:0010017 "red or far-red light signaling pathway" evidence=IMP

GO:0042752 "regulation of circadian rhythm" evidence=IMP

ZFIN|ZDB-GENE-060825-269 srrd "SRR1 domain containing" [Danio rerio (taxid:7955)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 64/207 (30%), Positives = 109/207 (52%)

Query:    16 NEDWTIVLPRRGKQRRNLRRIRSPEEQQKPWFPTEIESDPHRVSKLLQRIEMSIKKMESS 75
             NE W +   R+G  RR  +++ +P+        ++ +SD  ++ +  Q+I  ++ ++   
Sbjct:     4 NEGWQVAGRRKGAARRG-KQVLNPK------LDSQQDSDC-KIDQ--QKIIHAMNELRGE 53

Query:    76 EFYRTLLDQIQTPEVLNSFYNVLGSESNMQMVIYGIGCLESYGPPRLQLSLAILMKRKFS 135
              F+    D +    +L+S        S +Q V YG+G  ES    R QL++ +L+     
Sbjct:    54 SFWMEWKDLLCV-RLLSSTSEQSEDASLLQCVCYGLGHFESCVSARFQLAMLLLLLETLQ 112

Query:   136 W-IGDIEVFDPILSSTEARVLEALGCSVLSVNEQGRRCAIKPTLFYMPHCEAELYNNLLQ 194
               +    V+DP+ S +E   L+ LG +VL+ NE+G+R   +PTLFY+ HC   LYNNLL 
Sbjct:   113 IPMSSCCVYDPVFSPSECDALKELGFTVLTENEEGKRAVYQPTLFYLMHCGKALYNNLLW 172

Query:   195 ANWGAM-LKQMVLFGNSFEMYHQHVLE 220
              NW    L++M + GNSF    + +L+
Sbjct:   173 RNWTPRTLQKMTIIGNSFNGIQERMLQ 199

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1917368 Srrd "SRR1 domain containing" [Mus musculus (taxid:10090)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 64/192 (33%), Positives = 101/192 (52%)

Query:    33 LRRIRSPEEQQK--PWFPTEIESDPHRVSKLLQRIEMSIKKMESSEFYRTLLDQIQTPEV 90
             LRR+R  EE  +   +  + +E+    + K L++++   + +       +L    Q P  
Sbjct:    43 LRRLREAEEDLRISDFCSSALETITECLRKQLEQLQPLTEALGRLHLGSSLPSASQEP-- 100

Query:    91 LNSFYNVLGSESNMQMVIYGIGCLESYGPPRLQLSLAILMKRKFSWI-GDIEVFDPILSS 149
                   +  S S+++ V YG+G   S    R+QL+  +L   K         V+DP+ S 
Sbjct:   101 ------LASSASHVKCVCYGLGTFASCPTARIQLAFMLLFLEKCQVPRSHCWVYDPLFSQ 154

Query:   150 TEARVLEALGCSVLSVNEQGRRCAI-KPTLFYMPHCEAELYNNLLQANWGA-MLKQMVLF 207
             TE  VL +LG +VLS NE+G+R    +PT+FYMPHC   LYNNLL +NW A  L ++++ 
Sbjct:   155 TEVSVLTSLGVTVLSENEEGKRSVQGQPTVFYMPHCGTALYNNLLWSNWSADALSRVLII 214

Query:   208 GNSFEMYHQHVL 219
             GNSF    + +L
Sbjct:   215 GNSFRGLEERLL 226

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0048511 "rhythmic process" evidence=IEA

UNIPROTKB|Q9UH36 SRRD "SRR1-like protein" [Homo sapiens (taxid:9606)]

 Score = 210 (79.0 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 62/196 (31%), Positives = 102/196 (52%)

Query:    33 LRRIRSPEEQQ--KPWFPTEIESDPHRVSKLLQRIEMSIKKMESSEFYRTLLDQI--QTP 88
             LRRI   E+      ++ + +E+    ++K L++++  +  + S  F    LD +  ++ 
Sbjct:    63 LRRIWEAEKDLFISDFWSSALETINRCLTKHLEQLKAPVGTL-SDIFGNLHLDSLPEESD 121

Query:    89 EVLNSFYN--VLGSESNMQMVIYGIGCLESYGPPRLQLSLAILMKRKFSWI-GDIEVFDP 145
                +S     ++    +++ V YGIG   +    R QL+  +L+  K         V+DP
Sbjct:   122 VATDSIPREILVTGTCHLKCVCYGIGNFATCIVARNQLTFLLLLLEKCQIPRSHCWVYDP 181

Query:   146 ILSSTEARVLEALGCSVLSVNEQGRRCAI-KPTLFYMPHCEAELYNNLLQANWGA-MLKQ 203
             + S  E  VL  LG +VLS NE+G+R    +PT+FYM HC   LYNNLL +NW    L +
Sbjct:   182 LFSQLEIEVLNTLGVTVLSENEEGKRSIRGEPTIFYMLHCGTALYNNLLWSNWSVDALSK 241

Query:   204 MVLFGNSFEMYHQHVL 219
             MV+ GNSF+   + +L
Sbjct:   242 MVIIGNSFKGLEERLL 257

GO:0048511 "rhythmic process" evidence=IEA

FB|FBgn0038582 CG7988 [Drosophila melanogaster (taxid:7227)]

 Score = 158 (60.7 bits), Expect = 1.5e-09, P = 1.5e-09
 Identities = 53/199 (26%), Positives = 91/199 (45%)

Query:    17 EDWTIVLPRRGKQRRNLRRIRSPEEQQKPWFPTEIESDPHRVSKLLQRIEMSIKKMESSE 76
             ED+ +V  ++   R+ LRR R   + +  +    I+     V K   R+E    +M  S+
Sbjct:     6 EDFQVVTRKKWMARKCLRR-RDRHKSESDYL---IDCPDVNVEKFQPRLENLCTEMCQSD 61

Query:    77 FYRTLLDQIQTPEVLNSFYNVLGSESNMQMVIYGIGCLESYGPPRLQLSLAILMKRKFSW 136
             ++   ++ +Q  + L      L      ++V  G+G          Q +  I + R    
Sbjct:    62 YFLVAMEALQ--QQLEGIRKPLE-----RIVCLGLGPFSRTYHALHQAAFVIGLHRHHK- 113

Query:   137 IGDIEVFDPILSSTEARVLEAL-GCSVLSVNEQGRRCAIKPTLFYMPHCEAELYNNLLQA 195
             I +   FDP+   +E  ++    GC ++S +  G+  A  PTL+Y+PHC   L +N+L +
Sbjct:   114 IREALYFDPVFRDSEKELIRLFDGC-IMSKDCAGKHEATVPTLYYLPHCPYALMHNILWS 172

Query:   196 NWGA-MLKQMVLFGNSFEM 213
             NW    L  + L  NSFEM
Sbjct:   173 NWKRETLPNVFLISNSFEM 191

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0007623 "circadian rhythm" evidence=ISS

POMBASE|SPBC14C8.13 SPBC14C8.13 "SRR1 family protein" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 118 (46.6 bits), Expect = 7.4e-05, P = 7.4e-05
 Identities = 44/167 (26%), Positives = 77/167 (46%)

Query:    49 TEIESDPHRVSKLLQRIEMSIKKMESSEFYRTLLDQIQTPEVLNSFYNVLGSESNMQMVI 108
             T+ ++D      L ++++ S +K+E SEF +++  Q      L+ F + +      + +I
Sbjct:    27 TQGDTDLWSQDTLQRKLDNSREKLEYSEFLKSVQSQ------LSEFKDPIH-----KCII 75

Query:   109 YGIGCLESYGPPRLQLSLAILMKRKFSWIGDI-EVFDPILSSTEARVLEALGCSVLSVNE 167
              G+G + +     LQLSL   + + F+        +DP     +   LE  G  VL  + 
Sbjct:    76 LGLGRIHTL-TASLQLSLFFEIMKIFNLQPRFCSFYDPAFLKDDVEFLENKGFCVLP-DP 133

Query:   168 QGRRCAIKPTLFYMPHCEAELYNNLLQANWGAMLKQMVLFGNSFEMY 214
                 C +K TL YMPHC   LY   L A      +  ++ GN+ ++Y
Sbjct:   134 PTPSC-LKYTLLYMPHCPTSLYETWLAAYVNDDPRHFIMCGNNLQLY 179


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.136   0.411    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      277       277   0.00080  115 3  11 22  0.46    33
                                                     33  0.41    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  614 (65 KB)
  Total size of DFA:  215 KB (2119 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.00u 0.09s 25.09t   Elapsed:  00:00:02
  Total cpu time:  25.00u 0.09s 25.09t   Elapsed:  00:00:02
  Start:  Tue May 21 00:49:49 2013   End:  Tue May 21 00:49:51 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GWZ6	SRR1_ARATH	No assigned EC number	0.5714	0.9133	0.92	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	277
PLN03093	273	PLN03093, PLN03093, Protein SENSITIVITY TO RED LIG	1e-159
pfam07985	56	pfam07985, SRR1, SRR1	2e-15

>gnl|CDD|178641 PLN03093, PLN03093, Protein SENSITIVITY TO RED LIGHT REDUCED 1; Provisional

 Score =  443 bits (1142), Expect = e-159
 Identities = 179/269 (66%), Positives = 219/269 (81%), Gaps = 1/269 (0%)

Query: 6   KVIGPETHMLNEDWTIVLPRRGKQRRNLRRIRSPEEQQKPWFPTEIESDPHRVSKLLQRI 65
           K +  +    N +WT+VLPRRGK+RR  +   +PEE+Q+PW PT++ESDP R +KL+Q++
Sbjct: 1   KELTVDNSSSNGEWTVVLPRRGKRRRKPKPKGTPEEEQQPWVPTDLESDPERQAKLIQKM 60

Query: 66  EMSIKKMESSEFYRTLLDQIQTPEVLNSFYNVLGSESNMQMVIYGIGCLESYGPPRLQLS 125
           E+ IKK+ESS+FY+  L+Q+++PEVL+SF+ VLGSE  MQMVIYGIG +ESY  PR QLS
Sbjct: 61  EICIKKVESSQFYQAFLEQVKSPEVLDSFHLVLGSELKMQMVIYGIGSIESYETPRFQLS 120

Query: 126 LAILMKRKFSWIGDIEVFDPILSSTEARVLEALGCSVLSVNEQGRRCAIKPTLFYMPHCE 185
           LAILMKR+F WIGDIEVFDP+LS+TE+RVLE+LGCSVLSVNEQGRR A KPTLF+MPHCE
Sbjct: 121 LAILMKREFDWIGDIEVFDPVLSATESRVLESLGCSVLSVNEQGRREATKPTLFFMPHCE 180

Query: 186 AELYNNLLQANWGA-MLKQMVLFGNSFEMYHQHVLEFKGSIVVDTARHILAARRFTHEFG 244
           AELYNNLLQANW    L  + LFGNSFEMY + V EF  S VVD+ +HILAAR+FT EF 
Sbjct: 181 AELYNNLLQANWRMERLNHIALFGNSFEMYEEQVSEFFNSEVVDSTKHILAARKFTSEFA 240

Query: 245 IKTVSDDYFAGFHDSSWLFFRPDLESELQ 273
           IKTVSDDYFA FHDSSW FF P +++EL 
Sbjct: 241 IKTVSDDYFAAFHDSSWHFFSPGIDTELP 269

Length = 273

>gnl|CDD|219682 pfam07985, SRR1, SRR1

 Score = 68.7 bits (169), Expect = 2e-15
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 105 QMVIYGIGCLESYGPPRLQLSLAILMKRKFSWI-GDIEVFDPILSSTEARVLEALG 159
           ++V  G+G        R QL+L +L+K KF+    D+ V+DP+ S  +  VLE+LG
Sbjct: 1   RIVCLGLGSFSESEAARYQLALLLLLKEKFNIPPKDVSVYDPVFSPLDKEVLESLG 56

SRR1 proteins are signalling proteins involved in regulating the circadian clock in Arabidopsis. Length = 56

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	277
PLN03093	273	Protein SENSITIVITY TO RED LIGHT REDUCED 1; Provis	100.0
KOG3131	281	consensus Uncharacterized conserved protein [Funct	100.0
PF07985	56	SRR1: SRR1; InterPro: IPR012942 Sensitivity To Red	99.84

>PLN03093 Protein SENSITIVITY TO RED LIGHT REDUCED 1; Provisional

Probab=100.00  E-value=5.9e-80  Score=560.89  Aligned_cols=269  Identities=67%  Similarity=1.120  Sum_probs=256.8

Q ss_pred             cccCCcccccCCCcEEeccCCCccccccccCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHHHHhhhChHHHHHHHhc
Q 023803            6 KVIGPETHMLNEDWTIVLPRRGKQRRNLRRIRSPEEQQKPWFPTEIESDPHRVSKLLQRIEMSIKKMESSEFYRTLLDQI   85 (277)
Q Consensus         6 ~~~~~~~~~~~~~W~~V~~rrg~~r~~~~~~~~~~~~~~p~~~~e~~~d~~~~~kl~~~l~~~~~~l~~S~f~~~l~~~L   85 (277)
                      |++|++++|.+++||+|.|||||||++.++...++..++||+|+|++.|+.++++|+++|++++++++.|.||+++.+++
T Consensus         1 ~~~~~~~~~~~~~w~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~kL~~ki~~~~e~ve~S~F~~~l~~q~   80 (273)
T PLN03093          1 KELTVDNSSSNGEWTVVLPRRGKRRRKPKPKGTPEEEQQPWVPTDLESDPERQAKLIQKMEICIKKVESSQFYQAFLEQV   80 (273)
T ss_pred             CceeeccCCCccceEEEecccccccCCCCccCCCcccCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            56789999999999999999999999887666556667899999999999999999999999999999999999999999


Q ss_pred             cChhhhhhhhcccCCCCcceEEEEecCCCCCCchhHHHHHHHHHHHHHhCcCCceEEeCCCCCHHHHHHHHHcCceEecc
Q 023803           86 QTPEVLNSFYNVLGSESNMQMVIYGIGCLESYGPPRLQLSLAILMKRKFSWIGDIEVFDPILSSTEARVLEALGCSVLSV  165 (277)
Q Consensus        86 ~~~~~~~~l~~~l~~~~i~~ivclGLGsf~~~~~a~~QLAlll~L~~~l~~~~~v~~yDPvft~~D~~~l~~LG~~Vl~~  165 (277)
                      +..++++.+.+++|+....+|||||||||+.+.+|||||||+++|+++|+.+++|++|||||++.|+++|++|||+|+++
T Consensus        81 ~~~~~~d~~~~~~gs~~~~~iVclGLGsf~~s~~AR~QLAflLlL~~~~~~i~~v~vYDPVFs~~e~~~Le~LG~~Vls~  160 (273)
T PLN03093         81 KSPEVLDSFHLVLGSELKMQMVIYGIGSIESYETPRFQLSLAILMKREFDWIGDIEVFDPVLSATESRVLESLGCSVLSV  160 (273)
T ss_pred             cchHHHHHHHhhccccccceEEEEeecCccccccHHHHHHHHHHHHHHhCCcccEEEECCCCCHHHHHHHHHcCCeeccc
Confidence            98789999999999988899999999999999999999999999999998788999999999999999999999999999


Q ss_pred             CccccccCCCCeEEEecCCCHHHHHHHHHHhhc-cccCcEEEEecChhHHHHhhhhhcccccccchhHHHHhcccceeec
Q 023803          166 NEQGRRCAIKPTLFYMPHCEAELYNNLLQANWG-AMLKQMVLFGNSFEMYHQHVLEFKGSIVVDTARHILAARRFTHEFG  244 (277)
Q Consensus       166 n~~g~~~~~~~TLfymPHc~~~Ly~nlL~~nw~-~~L~~~vliGNsf~~~~~~~~~~~~~~~~~~~~~il~~~~~~~e~~  244 (277)
                      |++|++.+++||||||||||+.||+|+|++||+ ++|++++||||||++|.++++++++++..++.+||+++.+|++|++
T Consensus       161 neegkr~a~~pTLFYMPHCp~~LyeNLL~aNWs~e~L~~ivliGNSFe~y~~~~~~~~~~~~~~~~~hIla~~~~~~E~~  240 (273)
T PLN03093        161 NEQGRREATKPTLFFMPHCEAELYNNLLQANWRMERLNHIALFGNSFEMYEEQVSEFFNSEVVDSTKHILAARKFTSEFA  240 (273)
T ss_pred             cccccccCCCCeEEEeCCCCHHHHHHHHHHhCCHHHcCCEEEEeCCHHHHHHHHHHhcCcccccchHHHHHHHHHhhhhe
Confidence            999999999999999999999999999999999 8999999999999999999998888888899999999999999999


Q ss_pred             ccCCCCCcccccccceeEEecCCCCcccCC
Q 023803          245 IKTVSDDYFAGFHDSSWLFFRPDLESELQP  274 (277)
Q Consensus       245 l~~~~~~~~~aFnDtsih~F~~~~~~~~~~  274 (277)
                      +.+.+++|.+||||||||+||++.++||+.
T Consensus       241 l~~~~dd~~~~FnD~S~H~F~~~~~~~l~~  270 (273)
T PLN03093        241 IKTVSDDYFAAFHDSSWHFFSPGIDTELPL  270 (273)
T ss_pred             eccCCcchhhhhcccceeecCCccchhhhh
Confidence            997788999999999999999999999985

>KOG3131 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1e-51  Score=369.15  Aligned_cols=241  Identities=30%  Similarity=0.463  Sum_probs=193.0

Q ss_pred             cCCCcEEeccCCCccccccccCCCCcccCCCCCCCCCC--CChHHHHHHHHHHHHHHHHhhhChHHHHHHHhccChhhhh
Q 023803           15 LNEDWTIVLPRRGKQRRNLRRIRSPEEQQKPWFPTEIE--SDPHRVSKLLQRIEMSIKKMESSEFYRTLLDQIQTPEVLN   92 (277)
Q Consensus        15 ~~~~W~~V~~rrg~~r~~~~~~~~~~~~~~p~~~~e~~--~d~~~~~kl~~~l~~~~~~l~~S~f~~~l~~~L~~~~~~~   92 (277)
                      .+++|+||+|.|-.+|++.+++.-.+      ..++.+  .+...+++++++++..+.+++.|+|+..++++|++.  ++
T Consensus         4 s~~df~VV~r~~~~~Rkk~k~rG~~~------k~~dt~iD~~~v~~~~fq~klensr~kle~S~Fl~~~lEqLq~~--l~   75 (281)
T KOG3131|consen    4 SGEDFQVVTRKKWMARKKLKRRGRHK------KESDTLIDCPDVNVEKFQPKLENSRTKLEQSDFLLVALEQLQQQ--LE   75 (281)
T ss_pred             CCCceEEEecchhhhhcccCccCCCc------cccccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--Hh
Confidence            47899999963311122222111000      023334  345556679999999999999999999999999976  54


Q ss_pred             hhhcccCCCCcceE-EEEecCCCCCCchhHHHHHHHHHHHHHhCcCC-ceEEeCCCCCHHHHHHHHHcCceEeccCcccc
Q 023803           93 SFYNVLGSESNMQM-VIYGIGCLESYGPPRLQLSLAILMKRKFSWIG-DIEVFDPILSSTEARVLEALGCSVLSVNEQGR  170 (277)
Q Consensus        93 ~l~~~l~~~~i~~i-vclGLGsf~~~~~a~~QLAlll~L~~~l~~~~-~v~~yDPvft~~D~~~l~~LG~~Vl~~n~~g~  170 (277)
                      .|.+     .|.+| ||||||+|++..+|+||||++++|.++|++.+ .|++|||||+.+|+++|++||+.|+.+++.|+
T Consensus        76 ~~~~-----piek~~vclglG~f~~~~~a~~Qlal~iei~r~fk~~~~~~s~fDPvf~k~E~eyLeslG~cvLs~~e~~~  150 (281)
T KOG3131|consen   76 GIRK-----PIEKIIVCLGLGPFSRTYHALHQLALVIEIHRHFKIRDVEASYFDPVFRKSEKEYLESLGGCVLSKDEAGK  150 (281)
T ss_pred             hhcc-----chhheEEEEeeccccccccHHHHHHHHHHHHHHhccccceeeeeCcchhhhHHHHHHhcCCeEeccCcccc
Confidence            4443     46775 99999999999999999999999999999654 69999999999999999999999999999999


Q ss_pred             ccCCCCeEEEecCCCHHHHHHHHHHhhc-cccCcEEEEecChhHHHHhhhhhcccccccchhHHHHhcccceeecccCCC
Q 023803          171 RCAIKPTLFYMPHCEAELYNNLLQANWG-AMLKQMVLFGNSFEMYHQHVLEFKGSIVVDTARHILAARRFTHEFGIKTVS  249 (277)
Q Consensus       171 ~~~~~~TLfymPHc~~~Ly~nlL~~nw~-~~L~~~vliGNsf~~~~~~~~~~~~~~~~~~~~~il~~~~~~~e~~l~~~~  249 (277)
                      +.+.+||||||||||..||+|+||+||. +.+++++++||||.+|++.+.    ++..+...+|-++...+..-.+. .+
T Consensus       151 ~ealkpTLyylPHcp~~LyeNiL~snw~~Drl~k~~LcgNsfqml~~~v~----~~i~nt~p~I~k~~~~~~ft~l~-p~  225 (281)
T KOG3131|consen  151 HEALKPTLYYLPHCPYALYENILWSNWKRDRLPKVFLCGNSFQMLTMTVH----YPIRNTDPHITKIVEHCTFTPLE-PD  225 (281)
T ss_pred             ccccceeeEecCCCchHHHHHHHHHhhhhccccceEEecCcHHHHHhhcc----chhccCChHHHhhhhcccccccc-Cc
Confidence            9999999999999999999999999999 999999999999999988743    33445556666665544333332 35


Q ss_pred             CCcccccccceeEEecCCCCcccC
Q 023803          250 DDYFAGFHDSSWLFFRPDLESELQ  273 (277)
Q Consensus       250 ~~~~~aFnDtsih~F~~~~~~~~~  273 (277)
                      ++|.+||||+|||+||.+.+.|.+
T Consensus       226 ~~~~nafnDlSlhffps~sd~es~  249 (281)
T KOG3131|consen  226 YEHHNAFNDLSLHFFPSESDPESN  249 (281)
T ss_pred             chhhhccccceeeecccccccccc
Confidence            669999999999999999988764

>PF07985 SRR1: SRR1; InterPro: IPR012942 Sensitivity To Red Light Reduced proteins (SRR1) are signalling proteins thought to be involved in regulating the circadian clock input pathway, which is required for normal oscillator function

Probab=99.84  E-value=4e-21  Score=138.08  Aligned_cols=55  Identities=31%  Similarity=0.648  Sum_probs=52.0

Q ss_pred             eEEEEecCCCCCCchhHHHHHHHHHHHHHhCcC-CceEEeCCCCCHHHHHHHHHcC
Q 023803          105 QMVIYGIGCLESYGPPRLQLSLAILMKRKFSWI-GDIEVFDPILSSTEARVLEALG  159 (277)
Q Consensus       105 ~ivclGLGsf~~~~~a~~QLAlll~L~~~l~~~-~~v~~yDPvft~~D~~~l~~LG  159 (277)
                      +|||||||||+.+.+|+||||++++|++.|+.. .+|++|||+||+.|+++|++||
T Consensus         1 ~ivclGLGsf~~~~~a~~QLA~ll~l~~~l~~~~~~v~~yDPvft~~d~~~L~~lG   56 (56)
T PF07985_consen    1 KIVCLGLGSFSSSRSARYQLALLLLLKEELSIPRDQVSIYDPVFTEVDKAFLESLG   56 (56)
T ss_pred             CEEEEEecCccccccHHHHHHHHHHHHHHhCCCCCcEEEECCCCCHHHHHHHHHcC
Confidence            599999999999999999999999999999843 5899999999999999999998

In Arabidopsis thaliana it regulates the expression of clock-regulated genes such as CCA1 and TOC1. It is also involved in both the phytochrome B (PHYB) and PHYB-independent signaling pathways [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	277
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-08

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 9e-08
 Identities = 43/319 (13%), Positives = 85/319 (26%), Gaps = 105/319 (32%)

Query: 28  KQRRNLRRIRSPEEQQKPWFPTEIESDPHRVSKLLQRIEMSIKKMESSEFYRTL--LDQI 85
           +  + L     P    +    + I+   H +   L+R+      ++S  +   L  L  +
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL------LKSKPYENCLLVLLNV 253

Query: 86  QTPEVLNSF---------------YNVLGSESNMQMVIYGIGCLESYGPPRLQLSLAILM 130
           Q  +  N+F                + L + +   + +       +  P       ++L+
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL--DHHSMTLTPDE---VKSLLL 308

Query: 131 KRKFSWIGDIEVFDPILSSTEARVLEALGCSVLSVNEQGRRCAIKPTLF-YMPH--CEA- 186
           K    ++      D  L        E L  +   ++            +    H  C+  
Sbjct: 309 K----YLD-CRPQD--LPR------EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355

Query: 187 -----------------ELYNNL-------------LQANWGAMLKQMV----------- 205
                            ++++ L             L   W  ++K  V           
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415

Query: 206 -LFGNSFEM---YHQHVLEFKGSIVVDTARH--ILAA----RRFTHEFGIKTVSDDYFA- 254
            +     E         LE K  +  + A H  I+      + F  +  I    D YF  
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475

Query: 255 --GFH------DSSWLFFR 265
             G H            FR
Sbjct: 476 HIGHHLKNIEHPERMTLFR 494

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00