Citrus Sinensis ID: 023815

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270------
Protein Sequence
MLLGRVKSEDDNKLKSFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDLEDESPLPGEGIDKPRGCEHVG
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccccHHHcHHHHHHHHHHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccccHcHHccccEEEEEccHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Coil and Loop (DISEMBL)
mllgrvkseddnkLKSFQAGFLKNLKSLyrftrpntlNGLVIAVTSIcclplqnlgdltpTFFMEVFKTVVPAALMAIYMTAINQLVDVkidkinkpdlplasgdfsiKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAysidlpflRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDlhdvdgdkeygIRTFSVMLGKERMIKELLNLFknmdledesplpgegidkprgcehvg
Flexible Loop (DISEMBL)
mllgrvkseddnklksFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKPdlplasgdfsIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKdlhdvdgdkeyGIRTFSVMLGKERMIKELLNLFKNMdledesplpgegidkprgcehvg
Low Complexity Region (SEG)
MLLGRVKSEDDNKLKSFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDLEDESPLPGEGIDKPRGCEHVG
Disordered region (IsUnstruct)
****************FQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKN************************
Disordered Region (DISOPRED)
***********************NLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDLEDESPLPGEGIDKPR******
Disordered Region (DISEMBL)
**********DNKLKSFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDLEDESPLPGEGIDKPRGCEHVG
Disordered Region (DISPRO)
*************LKSFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDLEDESPLPGEGI*KP*******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLGRVKSEDDNKLKSFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDLEDESPLPGEGIDKPRGCEHVG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	276	2.2.26 [Sep-21-2011]
Q8VWJ1	393	Homogentisate phytyltrans	yes	no	0.887	0.623	0.435	7e-58
B7FA90	404	Probable homogentisate ph	yes	no	0.797	0.544	0.468	7e-55
B9A1Q4	409	Glycinol 4-dimethylallylt	no	no	0.833	0.562	0.406	1e-42
B1B3P3	410	Naringenin 8-dimethylally	N/A	no	0.778	0.524	0.362	8e-38
Q0D576	379	Probable homogentisate ph	no	no	0.775	0.564	0.301	2e-16
Q1ACB3	386	Homogentisate phytyltrans	no	no	0.815	0.582	0.287	4e-16
B1L6Z7	281	Digeranylgeranylglyceryl	yes	no	0.547	0.537	0.284	2e-10
Q9Z5D6	302	Bacteriochlorophyll synth	yes	no	0.557	0.509	0.269	8e-10
A3CW74	279	Digeranylgeranylglyceryl	yes	no	0.702	0.695	0.289	2e-09
Q4J8K2	275	Digeranylgeranylglyceryl	yes	no	0.648	0.650	0.262	3e-09

>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=VTE2-1 PE=2 SV=1

 Score =  224 bits (570), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 108/248 (43%), Positives = 169/248 (68%), Gaps = 3/248 (1%)

Query: 4   GRVKSEDDNKLKSFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFF 63
           G+ ++ D N   S Q  F  +L + YRF+RP+T+ G V+++ S+  L ++ + D++P  F
Sbjct: 79  GQPEAFDSN---SKQKSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLF 135

Query: 64  MEVFKTVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSL 123
             + + VV A +M IY+  +NQL DV+IDK+NKP LPLASG++S+ TG+AI  + ++MS 
Sbjct: 136 TGILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSF 195

Query: 124 AMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIH 183
            +G ++GS PL W L + F+L TAYSI+LP LRWKR A +AA+ I+    + +Q +F++H
Sbjct: 196 WLGWIVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLH 255

Query: 184 IQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMI 243
           IQ +V GR ++ TR LIF T  ++  S+  AL KD+ D++GDK +GIR+FSV LG++R+ 
Sbjct: 256 IQTHVFGRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVF 315

Query: 244 KELLNLFK 251
              + L +
Sbjct: 316 WTCVTLLQ 323

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone. Tocopherol functions to limit lipid oxidation during seed desiccation, quiescence and germination and early seedling development. Protects thylakoid membrane lipids from photooxidation and is required for low-temperature adaptation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: nEC: 8

>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT1 PE=2 SV=1

 Score =  214 bits (544), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 103/220 (46%), Positives = 151/220 (68%)

Query: 23  KNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTA 82
            +L + YRF+RP+T+ G  +++ S+  L ++NL D++P F   + + VV A  M IY+  
Sbjct: 106 SSLDAFYRFSRPHTVIGTALSIVSVSLLAVENLSDVSPLFLTGLLEAVVAALFMNIYIVG 165

Query: 83  INQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWF 142
           +NQL D++IDK+NKP LPLASG++S  TGVA+    A MS  +G  +GS PL   L + F
Sbjct: 166 LNQLFDIEIDKVNKPTLPLASGEYSPATGVALVSAFAAMSFGLGWAVGSQPLFLALFISF 225

Query: 143 ILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFT 202
           IL TAYSI+LPFLRWKR+A +AA+ I+    V +Q +FF+HIQ +V  R  V TR LIF 
Sbjct: 226 ILGTAYSINLPFLRWKRSAVVAALCILAVRAVIVQLAFFLHIQTFVFRRPAVFTRPLIFA 285

Query: 203 TGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERM 242
           T  +T  S+  AL KD+ D++GD+ +GI++FSV LG++++
Sbjct: 286 TAFMTFFSVVIALFKDIPDIEGDRIFGIKSFSVRLGQKKV 325

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydroquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1 SV=1

 Score =  173 bits (439), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 94/231 (40%), Positives = 141/231 (61%), Gaps = 1/231 (0%)

Query: 22  LKN-LKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYM 80
           +KN L + Y F+ P T+ G+ +   S   L ++ L D++ +F + V + V+P   + IY+
Sbjct: 109 VKNVLSAFYWFSYPYTMIGITLCAFSSSLLAVEKLSDISLSFLIGVLQGVLPQLFIEIYL 168

Query: 81  TAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLIL 140
             +NQL D++IDKINKP LP+ASG FS KTGV I+     +S     + GS PL   L++
Sbjct: 169 CGVNQLYDLEIDKINKPHLPMASGQFSFKTGVIISAAFLALSFGFTWITGSWPLICNLVV 228

Query: 141 WFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLI 200
                TAYSID+P LRWKR  F+AA+ ++  + + +  S+F H+Q  VL R +   RSL 
Sbjct: 229 IASSWTAYSIDVPLLRWKRYPFVAAMCMISTWALALPISYFHHMQTVVLKRPIGFPRSLG 288

Query: 201 FTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFK 251
           F    +T  SL  AL KD+ DV+GDKE+GI +F+V LG++R     ++ F+
Sbjct: 289 FLVAFMTFYSLGLALSKDIPDVEGDKEHGIDSFAVRLGQKRAFWICVSFFE 339

Proposed to be involved in the biosynthesis of pterocarpan phytoalexins, specifically glyceollins. Can act as a prenyltransferase towards glycinol which is the direct precursor of glyceollins. Seems to be specific for prenylation at C-4 thus producing glyceollin I.

Glycine max (taxid: 3847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora flavescens GN=N8DT-1 PE=1 SV=1

 Score =  157 bits (397), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 78/215 (36%), Positives = 127/215 (59%)

Query: 28  LYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLV 87
            Y+F RP  +  +V+  T    + ++ L DL+  FF+   + VV    + I+   +NQL 
Sbjct: 117 FYKFCRPYAMFTIVLGATFKSLVAVEKLSDLSLAFFIGWLQVVVAVICIHIFGVGLNQLC 176

Query: 88  DVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTA 147
           D++IDKINKPDLPLASG  S +  V IT +  ++ L    ++ S PL W + +  ++ +A
Sbjct: 177 DIEIDKINKPDLPLASGKLSFRNVVIITASSLILGLGFAWIVDSWPLFWTVFISCMVASA 236

Query: 148 YSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVIT 207
           Y++DLP LRWK+   L AI+ +    V     FF+H+Q  V  R     R LIF T +++
Sbjct: 237 YNVDLPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKRPTTFPRPLIFCTAIVS 296

Query: 208 CMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERM 242
             ++  AL KD+ D++GD+++GI++ S+ LG +R+
Sbjct: 297 IYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRV 331

Involved in the biosynthesis of sophoraflavanone G (SFG). Can use flavanones (naringenin, liquiritigenin and hesperetin) as substrates, but not flavonols or isoflavones. Shows a strict specificity for dimethylallyl diphosphate.

Sophora flavescens (taxid: 49840)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 0

>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT2 PE=3 SV=2

 Score = 86.7 bits (213), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 108/219 (49%), Gaps = 5/219 (2%)

Query: 22  LKNLK-SLYRFTRPNTLNGLVIAVTSICCLPL-QNLGDLTPTFFMEVFKTVVPAALMAIY 79
           L +LK S +RF RP+T+ G  +   ++    L +N   +      + F  +V       Y
Sbjct: 80  LSDLKDSCWRFLRPHTIRGTALGSIALVARALIENPQLINWWLVFKAFYGLVALICGNGY 139

Query: 80  MTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLI 139
           +  INQ+ D++IDK+NKP LP+A+GD S++T   + +  A    ++ +    P +     
Sbjct: 140 IVGINQIYDIRIDKVNKPYLPIAAGDLSVQTAWLLVVLFAAAGFSIVVTNFGPFITSLYC 199

Query: 140 LWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSL 199
           L   L T YS+  P  R KR    A + I    G  + F  + +  +  LG +   +  +
Sbjct: 200 LGLFLGTIYSV--PPFRLKRYPVAAFLIIATVRGFLLNFGVY-YATRAALGLTFQWSSPV 256

Query: 200 IFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLG 238
            F T  +T  +L  A+ KDL DV+GD++Y I T +  LG
Sbjct: 257 AFITCFVTLFALVIAITKDLPDVEGDRKYQISTLATKLG 295

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis thaliana GN=HPT2 PE=2 SV=1

 Score = 85.5 bits (210), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 118/240 (49%), Gaps = 15/240 (6%)

Query: 3   LGRVKSEDD--NKLKSFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPL-QNLGDLT 59
           +G  +S+D   +++  FQ        + +RF RP+T+ G  +  T++    L +N   + 
Sbjct: 74  VGAAESDDPVLDRIARFQ-------NACWRFLRPHTIRGTALGSTALVTRALIENTHLIK 126

Query: 60  PTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCA 119
            +  ++    ++       Y+  INQ+ D+ IDK+NKP LP+A+GD S+++   + +  A
Sbjct: 127 WSLVLKALSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIFFA 186

Query: 120 MMS-LAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQF 178
           +   L +G   G P +     L   L T YS+  P LR KR    A + I    G  + F
Sbjct: 187 IAGLLVVGFNFG-PFITSLYSLGLFLGTIYSV--PPLRMKRFPVAAFLIIATVRGFLLNF 243

Query: 179 SFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLG 238
             + H  +  LG     +  + F T  +T  +L  A+ KDL DV+GD+++ I T +  LG
Sbjct: 244 GVY-HATRAALGLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLG 302

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B1L6Z7|DGGGP_KORCO Digeranylgeranylglyceryl phosphate synthase OS=Korarchaeum cryptofilum (strain OPF8) GN=Kcr_1480 PE=3 SV=1

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 88/172 (51%), Gaps = 21/172 (12%)

Query: 72  PAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGS 131
           P  LMA    AIN   D +ID INKP  P+ SG  S +  + I +  ++  +A+ I +G 
Sbjct: 46  PLVLMA--GNAINDYYDAEIDAINKPYRPIPSGRISKREALNIYIALSLFGIALSIFLG- 102

Query: 132 PPLAWGLILWFILVTAYSID-LPFLRWKRNAFLAAISIMIGYGVGIQFSF-FIHIQKYVL 189
                   + F++VTA+S+    + RW +   +   +++    +G+ F+  F  +    L
Sbjct: 103 -------FIEFLIVTAFSLSWYAYARWLKRTGVPGNALV---SLGVAFTLIFGSLAAGNL 152

Query: 190 GRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKER 241
              V+I  S+ FT+ +I      +  +K + D+ GD+ +G+RT +V +G +R
Sbjct: 153 TNKVIIFSSVAFTSNLI------REFVKAVEDLPGDRAHGVRTIAVRIGVKR 198

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Korarchaeum cryptofilum (strain OPF8) (taxid: 374847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|Q9Z5D6|BCHG_RHOS4 Bacteriochlorophyll synthase 33 kDa chain OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=bchG PE=4 SV=1

 Score = 64.3 bits (155), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 82/163 (50%), Gaps = 9/163 (5%)

Query: 82  AINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILW 141
           A N   D  +D +N+PD P+ SG    + G+ I L   ++SLA+G M+G  P  +G  + 
Sbjct: 69  AANNWCDRHVDAVNEPDRPIPSGRIPGRWGLYIALLMTVLSLAVGWMLG--PWGFGATV- 125

Query: 142 FILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIF 201
           F ++ A++  +  +R KR+ +     + + Y  G+ +     +         ++T +L++
Sbjct: 126 FGVLAAWAYSVEPIRLKRSGWWGPGLVALCY-EGLPWFTGAAVLSAGAPSFFIVTVALLY 184

Query: 202 TTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIK 244
             G    M+     L D   ++GD+++G+R+  VMLG E   K
Sbjct: 185 AFGAHGIMT-----LNDFKALEGDRQHGVRSLPVMLGPEVAAK 222

Catalyzes the esterification of bacteriochlorophyllide a by geranylgeraniol-PPi.

Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) (taxid: 272943)

>sp|A3CW74|DGGGP_METMJ Digeranylgeranylglyceryl phosphate synthase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=Memar_1697 PE=3 SV=1

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 102/221 (46%), Gaps = 27/221 (12%)

Query: 24  NLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAI 83
           ++ +  R TRP+  N +V  +T++    L   G LTP   +      V  AL+      I
Sbjct: 2   SVSAFIRITRPH--NAVVAGLTALIGY-LIATGTLTPPSLL----LAVIVALITAGGNVI 54

Query: 84  NQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFI 143
           N + DV+ID+IN+PD P+ +GD S+    A      +  +A+  +  +  LA  +I   I
Sbjct: 55  NDVRDVEIDRINRPDRPIPAGDISLAGARAYAAALFVGGIAIATLTTTLCLAIAIINSVI 114

Query: 144 LVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSF---FIHIQKYVLGRSVVITRSLI 200
           L+  Y++     R KR   L   ++ + Y  G  F F   F  I+  V   S+     L 
Sbjct: 115 LIV-YAV-----RLKRTPVLG--NVAVAYLAGSVFLFGGAFAGIEGLVRNLSLAAITFL- 165

Query: 201 FTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKER 241
                    ++A+ LLKD  DVDGD   G RT  +++G  +
Sbjct: 166 --------ATIARELLKDAEDVDGDAAGGARTLPMIVGVRK 198

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) (taxid: 368407)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|Q4J8K2|DGGGP_SULAC Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=Saci_1565 PE=3 SV=1

 Score = 62.4 bits (150), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 93/198 (46%), Gaps = 19/198 (9%)

Query: 43  AVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKPDLPLA 102
           AV++     +      TP FF+ +    +  +L+A     IN + D+++DKINKP+ PL 
Sbjct: 19  AVSAFMGYVIATTWKFTPLFFLPL----LVVSLIAAGGYVINDVYDIEVDKINKPERPLP 74

Query: 103 SGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAF 162
           SG  ++      ++    + L + I +G  P  + LI   +L+  Y+  L  L    N  
Sbjct: 75  SGRIAVNIARRFSIVLFAVGLIISIPLGLIPFGFALIT-IVLLYEYARSLKKLGLVGNFI 133

Query: 163 LAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDV 222
           +A  S +  Y  G+           +LG  ++ T  + F T       L++  +K + D+
Sbjct: 134 VALTSALSAYYGGLA-------SGSLLGNFIIPTIYIFFFT-------LSREFVKGIEDI 179

Query: 223 DGDKEYGIRTFSVMLGKE 240
           +GDK  G+ T +V LG++
Sbjct: 180 EGDKRNGVNTLAVKLGEK 197

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) (taxid: 330779)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
224143266	284	predicted protein [Populus trichocarpa]	0.815	0.792	0.52	5e-62
219842170	411	homogentisate geranylgeranyl transferase	0.880	0.591	0.489	6e-62
359476155	397	PREDICTED: probable homogentisate phytyl	0.855	0.594	0.477	4e-61
296082088	398	unnamed protein product [Vitis vinifera]	0.855	0.592	0.477	5e-61
81295662	395	homogentisate phytyltransferase VTE2-1 [	0.869	0.607	0.453	2e-58
295656253	401	homogentisate geranylgeranyl transferase	0.855	0.588	0.481	2e-58
377657555	394	homogentisate phytyltransferase [Brassic	0.858	0.601	0.459	8e-57
301154093	394	Chlorophyll synthase [Musa balbisiana]	0.800	0.560	0.466	1e-56
185487419	407	homogentisate phytyltransferase [Manihot	0.876	0.594	0.454	1e-56
301154114	398	Chlorophyll synthase [Musa balbisiana]	0.800	0.555	0.466	2e-56

>gi|224143266|ref|XP_002324898.1| predicted protein [Populus trichocarpa] gi|222866332|gb|EEF03463.1| predicted protein [Populus trichocarpa]

 Score =  243 bits (621), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 117/225 (52%), Positives = 164/225 (72%)

Query: 25  LKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAIN 84
           L S Y+F+RP+T+ G +I +TS+  LP++ + +L+PTFFM + K +VP+ LM IY+  +N
Sbjct: 1   LHSFYQFSRPHTVIGTLIGITSVSLLPVETISELSPTFFMGLLKALVPSVLMNIYVVGLN 60

Query: 85  QLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFIL 144
           QL DV+IDK+NKP LPLASGDFS+ TGVAI     + S AMGIM  SP L   L++  +L
Sbjct: 61  QLFDVEIDKVNKPYLPLASGDFSMGTGVAIVSASLLASFAMGIMFQSPLLFSALLISCVL 120

Query: 145 VTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTG 204
            + YSI+LPFLRWK+ AFLAA  IMI   + +Q +FF+H+QK+VLG++ V+TRSL+F T 
Sbjct: 121 GSVYSIELPFLRWKKQAFLAATCIMIVRAIVVQLAFFVHMQKFVLGKTTVVTRSLVFATA 180

Query: 205 VITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNL 249
            +   S   AL KD+ DVDGD++YGI++FSV LG+ER+    +N+
Sbjct: 181 FMCFFSAVIALFKDIPDVDGDRDYGIQSFSVSLGQERVFWLCVNM 225

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219842170|dbj|BAH10642.1| homogentisate geranylgeranyl transferase [Hevea brasiliensis]

 Score =  243 bits (620), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 120/245 (48%), Positives = 176/245 (71%), Gaps = 2/245 (0%)

Query: 7   KSEDDNKL--KSFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFM 64
            SED + +   S +   L++L SLY+F+RP+T+ G +I +TS+  LP++ + DL+PT+F+
Sbjct: 93  NSEDGDDICSSSKRGPILEHLNSLYQFSRPHTVIGTIIGITSVSLLPVETIVDLSPTYFI 152

Query: 65  EVFKTVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLA 124
            + K +VP+ LM IY+  +NQL DV+IDK+NKP LPLASG FS+ TG+ I     ++SL 
Sbjct: 153 GLLKALVPSVLMNIYVVGLNQLFDVEIDKVNKPYLPLASGKFSMATGILIVSASLLLSLY 212

Query: 125 MGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHI 184
           MGI   SPPL   L++ F L + YSI+LPFLRWK++AFLAA  I+I   + +Q +FF+HI
Sbjct: 213 MGITFQSPPLLAALLISFALGSVYSIELPFLRWKKHAFLAASCILIVRAMVVQLAFFVHI 272

Query: 185 QKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIK 244
           QK+VLG+S+ I RSL+F T  +   S A AL KD+ DV+GD++YGI++FSV LG+ER++ 
Sbjct: 273 QKFVLGKSIFIPRSLMFATAFMCFFSAAIALFKDIPDVEGDRDYGIQSFSVSLGQERVLW 332

Query: 245 ELLNL 249
             +N+
Sbjct: 333 LCVNM 337

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476155|ref|XP_002282953.2| PREDICTED: probable homogentisate phytyltransferase 1, chloroplastic-like [Vitis vinifera]

 Score =  241 bits (614), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 116/243 (47%), Positives = 168/243 (69%), Gaps = 7/243 (2%)

Query: 7   KSEDDNKLKSFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEV 66
           K ED N +        K L++ Y F+RP+T+ G VI +TS+  LPL+ + DL+P FF+ +
Sbjct: 90  KPEDQNHVS-------KQLRAFYLFSRPHTIIGTVIGITSVSLLPLETISDLSPAFFVGL 142

Query: 67  FKTVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMG 126
            K +VP+ LM IY+  +NQ+ DV+IDK+NKP+LPLASGDFS++TG  I     +MS+ MG
Sbjct: 143 LKAMVPSVLMNIYVVGLNQIFDVEIDKVNKPELPLASGDFSMETGSQIVFISLLMSVGMG 202

Query: 127 IMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQK 186
           IM  SPPL   L++ F+L TAYSI++P LRWKR   LAA  I+I   + +Q +FF HIQK
Sbjct: 203 IMFQSPPLFCALLISFLLGTAYSIEIPLLRWKRYPLLAASCILIVRAIVVQLAFFAHIQK 262

Query: 187 YVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKEL 246
           +VLGRS+V T+S++F    +   S   AL KD+ DVDGD+E+GI++F+V LG++++    
Sbjct: 263 HVLGRSIVYTKSVVFGVAFMCFFSTVIALFKDIPDVDGDREFGIQSFTVKLGQKKVFWLC 322

Query: 247 LNL 249
           +N+
Sbjct: 323 VNM 325

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082088|emb|CBI21093.3| unnamed protein product [Vitis vinifera]

 Score =  240 bits (612), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 116/243 (47%), Positives = 168/243 (69%), Gaps = 7/243 (2%)

Query: 7   KSEDDNKLKSFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEV 66
           K ED N +        K L++ Y F+RP+T+ G VI +TS+  LPL+ + DL+P FF+ +
Sbjct: 66  KPEDQNHVS-------KQLRAFYLFSRPHTIIGTVIGITSVSLLPLETISDLSPAFFVGL 118

Query: 67  FKTVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMG 126
            K +VP+ LM IY+  +NQ+ DV+IDK+NKP+LPLASGDFS++TG  I     +MS+ MG
Sbjct: 119 LKAMVPSVLMNIYVVGLNQIFDVEIDKVNKPELPLASGDFSMETGSQIVFISLLMSVGMG 178

Query: 127 IMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQK 186
           IM  SPPL   L++ F+L TAYSI++P LRWKR   LAA  I+I   + +Q +FF HIQK
Sbjct: 179 IMFQSPPLFCALLISFLLGTAYSIEIPLLRWKRYPLLAASCILIVRAIVVQLAFFAHIQK 238

Query: 187 YVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKEL 246
           +VLGRS+V T+S++F    +   S   AL KD+ DVDGD+E+GI++F+V LG++++    
Sbjct: 239 HVLGRSIVYTKSVVFGVAFMCFFSTVIALFKDIPDVDGDREFGIQSFTVKLGQKKVFWLC 298

Query: 247 LNL 249
           +N+
Sbjct: 299 VNM 301

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|81295662|gb|ABB70124.1| homogentisate phytyltransferase VTE2-1 [Allium ampeloprasum]

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 113/249 (45%), Positives = 167/249 (67%), Gaps = 9/249 (3%)

Query: 3   LGRVKSEDDNKLKSFQAGF---------LKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQ 53
           LG VK+  ++ L+S   G+         L +L  LY+F+RP+T+ G  + + S+  L ++
Sbjct: 68  LGHVKATSEHSLESGSEGYTPRSIWEAVLASLNVLYKFSRPHTIIGTAMGIMSVSLLVVE 127

Query: 54  NLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVA 113
           +L D++P FF+ + + VV A  M +Y+  +NQL D++IDK+NKPDLPLASG++S + G A
Sbjct: 128 SLSDISPLFFVGLLEAVVAALFMNVYIVGLNQLFDIEIDKVNKPDLPLASGEYSPRAGTA 187

Query: 114 ITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYG 173
           I +  A+MS  +G ++GS PL W L + F+L TAYSI+LPFLRWKR+A +AAI I+    
Sbjct: 188 IVIASAIMSFGIGWLVGSWPLFWALFISFVLGTAYSINLPFLRWKRSAVVAAICILAVRA 247

Query: 174 VGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTF 233
           V +Q +FF+HIQ +V  R    TR LIF T  ++  S+  AL KD+ D+DGDK +GI +F
Sbjct: 248 VIVQLAFFLHIQSFVFKRPASFTRPLIFATAFMSFFSVVIALFKDIPDIDGDKIFGIHSF 307

Query: 234 SVMLGKERM 242
           SV LG+ER+
Sbjct: 308 SVRLGQERV 316

Source: Allium ampeloprasum

Species: Allium ampeloprasum

Genus: Allium

Family: Amaryllidaceae

Order: Asparagales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|295656253|gb|ADG26667.1| homogentisate geranylgeranyl transferase [Coriandrum sativum]

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 114/237 (48%), Positives = 169/237 (71%), Gaps = 1/237 (0%)

Query: 6   VKSEDDNKLKSFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFME 65
           ++S+DD +L   Q    + + + YRF+RP+T+ G +I +TS+  LPL ++GDL+P FF+ 
Sbjct: 87  IESKDD-QLTLLQGDLWRKIDAFYRFSRPHTIIGTIIGITSVSLLPLTSIGDLSPAFFVG 145

Query: 66  VFKTVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAM 125
             K ++P+  M IY+  +NQL DV+IDK+NKP+LPLASG++S+  G AI     +MS AM
Sbjct: 146 YLKALIPSIFMNIYVVGLNQLFDVEIDKVNKPNLPLASGEYSMGLGKAIVSAFGLMSFAM 205

Query: 126 GIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQ 185
           GI+  SPP+ + L++ F+  +AYS++LP LRWKRNAFLAA SI++   + +  +FF HIQ
Sbjct: 206 GIVFQSPPVFFALLICFLFGSAYSVELPLLRWKRNAFLAAFSILMVRAITVNLAFFYHIQ 265

Query: 186 KYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERM 242
           KYVLGR +V  RSL F T  I+  +   AL KD+ DVDGD+++GI++FSV LG++R+
Sbjct: 266 KYVLGRPMVFPRSLCFATVCISMFTTVIALFKDIPDVDGDRDFGIQSFSVCLGQKRV 322

Source: Coriandrum sativum

Species: Coriandrum sativum

Genus: Coriandrum

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|377657555|gb|AFB74211.1| homogentisate phytyltransferase [Brassica napus]

 Score =  226 bits (576), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 109/237 (45%), Positives = 165/237 (69%)

Query: 15  KSFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAA 74
           KS    F  +L + YRF+RP+T+ G V+++ S+  L ++ + D++P  F  + + VV A 
Sbjct: 88  KSKPNSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGILEAVVAAL 147

Query: 75  LMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPL 134
           +M IY+  +NQL DV+IDK+NKP LPLASG++S+KTG+AI  + ++MS  +G ++GS PL
Sbjct: 148 MMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVKTGIAIVASFSIMSFWLGWIVGSWPL 207

Query: 135 AWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVV 194
            W L + FIL TAYSI+LP LRWKR A +AA+ I+    + +Q +F++HIQ +V GR V+
Sbjct: 208 FWALFVSFILGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRPVM 267

Query: 195 ITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFK 251
            TR LIF T  ++  S+  AL KD+ D++GDK +GIR+FSV LG+ER+    ++L +
Sbjct: 268 FTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQERVFWTCVSLLQ 324

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|301154093|emb|CBW30171.1| Chlorophyll synthase [Musa balbisiana]

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 103/221 (46%), Positives = 160/221 (72%)

Query: 22  LKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMT 81
           L +L + YRF+RP+T+ G ++++ S+  L +++L D++P+F   + + V+ A  M IY+ 
Sbjct: 95  LTSLNAFYRFSRPHTVIGTIMSIISVSLLAVESLTDISPSFLTGLLEAVIAALFMNIYIV 154

Query: 82  AINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILW 141
            +NQ+ D++IDK+NKP+LPLASG++S++TGVA+ LT A MS  +  ++GS PL W L + 
Sbjct: 155 GLNQVYDIEIDKVNKPNLPLASGEYSLRTGVAVILTSAAMSFGVAWVVGSLPLFWALFIS 214

Query: 142 FILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIF 201
           FIL TAYS++LPFLRWKR A +AA+ I+    V +Q +FF+H+Q +V  RSV  +R LIF
Sbjct: 215 FILGTAYSVNLPFLRWKRFAVVAAVCILAVRAVVVQLAFFLHMQTFVFRRSVSFSRPLIF 274

Query: 202 TTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERM 242
            T  ++  S+  AL KD+ D++GD+ YGIR+FSV LG++R+
Sbjct: 275 ATAFMSFFSVVIALFKDIPDIEGDRIYGIRSFSVRLGQKRV 315

Source: Musa balbisiana

Species: Musa balbisiana

Genus: Musa

Family: Musaceae

Order: Zingiberales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|185487419|gb|ACC77744.1| homogentisate phytyltransferase [Manihot esculenta]

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 110/242 (45%), Positives = 162/242 (66%)

Query: 10  DDNKLKSFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKT 69
           D    KS     L  L + YRF+RP+T+ G  +++ S+  L ++ L DL+P FF  V + 
Sbjct: 96  DAYSPKSTSNSILNALDAFYRFSRPHTVIGTALSILSVSLLAVEKLSDLSPLFFTGVLEA 155

Query: 70  VVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMI 129
           VV A LM IY+  +NQL D++IDK+NKP LPLASG++S+  GV I  + +MMS  +G ++
Sbjct: 156 VVAALLMNIYIVGLNQLTDIEIDKVNKPYLPLASGEYSVGIGVMIIASFSMMSFWLGWVV 215

Query: 130 GSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVL 189
           GS PL W L + F+L TAYSI+LP LRWKR AF+AA+ I+    V +Q +F++H+Q +V 
Sbjct: 216 GSWPLFWALFVSFVLGTAYSINLPLLRWKRFAFVAAMCILAVRAVIVQLAFYLHMQTHVY 275

Query: 190 GRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNL 249
           GR  V +R LIF T  ++  S+  AL KD+ D++GDK +GIR+F+V LG+ER+    ++L
Sbjct: 276 GRPAVFSRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFTVRLGQERVFWTCISL 335

Query: 250 FK 251
            +
Sbjct: 336 LE 337

Source: Manihot esculenta

Species: Manihot esculenta

Genus: Manihot

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|301154114|emb|CBW30209.1| Chlorophyll synthase [Musa balbisiana]

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 103/221 (46%), Positives = 160/221 (72%)

Query: 22  LKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMT 81
           L +L + YRF+RP+T+ G ++++ S+  L +++L D++P+F   + + V+ A  M IY+ 
Sbjct: 96  LTSLNAFYRFSRPHTVIGTIMSIISVSLLAVESLTDISPSFLTGLLEAVIAALFMNIYIV 155

Query: 82  AINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILW 141
            +NQ+ D++IDK+NKP+LPLASG++S++TGVA+ LT A MS  +  ++GS PL W L + 
Sbjct: 156 GLNQVYDIEIDKVNKPNLPLASGEYSLRTGVAVILTSAAMSFGVAWVVGSLPLFWALFIS 215

Query: 142 FILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIF 201
           FIL TAYS++LPFLRWKR A +AA+ I+    V +Q +FF+H+Q +V  RSV  +R LIF
Sbjct: 216 FILGTAYSVNLPFLRWKRFAVVAAVCILAVRAVVVQLAFFLHMQTFVFRRSVSFSRPLIF 275

Query: 202 TTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERM 242
            T  ++  S+  AL KD+ D++GD+ YGIR+FSV LG++R+
Sbjct: 276 ATAFMSFFSVVIALFKDIPDIEGDRIYGIRSFSVRLGQKRV 316

Source: Musa balbisiana

Species: Musa balbisiana

Genus: Musa

Family: Musaceae

Order: Zingiberales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
TAIR|locus:2044440	393	HPT1 "homogentisate phytyltran	0.887	0.623	0.435	1.9e-53
UNIPROTKB|B1B5P4	407	SfN8DT-2 "Naringenin 8-dimethy	0.789	0.535	0.371	2.1e-38
UNIPROTKB|B1B3P3	410	N8DT-1 "Naringenin 8-dimethyla	0.789	0.531	0.362	1e-36
TAIR|locus:4010713740	393	HST "homogentisate prenyltrans	0.818	0.575	0.292	9.3e-20

TAIR|locus:2044440 HPT1 "homogentisate phytyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
 Identities = 108/248 (43%), Positives = 169/248 (68%)

Query:     4 GRVKSEDDNKLKSFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFF 63
             G+ ++ D N   S Q  F  +L + YRF+RP+T+ G V+++ S+  L ++ + D++P  F
Sbjct:    79 GQPEAFDSN---SKQKSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLF 135

Query:    64 MEVFKTVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSL 123
               + + VV A +M IY+  +NQL DV+IDK+NKP LPLASG++S+ TG+AI  + ++MS 
Sbjct:   136 TGILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSF 195

Query:   124 AMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIH 183
              +G ++GS PL W L + F+L TAYSI+LP LRWKR A +AA+ I+    + +Q +F++H
Sbjct:   196 WLGWIVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLH 255

Query:   184 IQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMI 243
             IQ +V GR ++ TR LIF T  ++  S+  AL KD+ D++GDK +GIR+FSV LG++R+ 
Sbjct:   256 IQTHVFGRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVF 315

Query:   244 KELLNLFK 251
                + L +
Sbjct:   316 WTCVTLLQ 323

GO:0004659 "prenyltransferase activity" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0010189 "vitamin E biosynthetic process" evidence=IMP;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=ISS

GO:0010176 "homogentisate phytyltransferase activity" evidence=IMP;IDA

GO:0042362 "fat-soluble vitamin biosynthetic process" evidence=TAS

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA;IMP

GO:0071555 "cell wall organization" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|B1B5P4 SfN8DT-2 "Naringenin 8-dimethylallyltransferase" [Sophora flavescens (taxid:49840)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 81/218 (37%), Positives = 129/218 (59%)

Query:    25 LKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAIN 84
             L + Y+F RP  +  +V+  T    + ++ L DL+  FF+   + VV    + I+   +N
Sbjct:   111 LDTFYKFCRPYAIFSVVLGATFKSLVAVERLSDLSLAFFIGWLQVVVAVICIHIFDVGLN 170

Query:    85 QLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFIL 144
             QL D++IDKINKPDLPLASG+ S +  V IT +  ++ L    ++GS PL W + +  + 
Sbjct:   171 QLCDIEIDKINKPDLPLASGNLSFRNVVIITASSLILGLGFAWIVGSWPLFWTVFICCMF 230

Query:   145 VTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTG 204
               AY++DLP LRWK+   L AIS +    V     FF+H+Q  V  R     R LIF T 
Sbjct:   231 AAAYNVDLPLLRWKKYPVLTAISFIANVAVTRSLGFFLHMQTCVFKRPTTFPRPLIFCTA 290

Query:   205 VITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERM 242
             +++  ++  AL KD+ D++GD+++GI++ S+ LG +R+
Sbjct:   291 IVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRV 328

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|B1B3P3 N8DT-1 "Naringenin 8-dimethylallyltransferase 1, chloroplastic" [Sophora flavescens (taxid:49840)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 79/218 (36%), Positives = 128/218 (58%)

Query:    25 LKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAIN 84
             L   Y+F RP  +  +V+  T    + ++ L DL+  FF+   + VV    + I+   +N
Sbjct:   114 LDIFYKFCRPYAMFTIVLGATFKSLVAVEKLSDLSLAFFIGWLQVVVAVICIHIFGVGLN 173

Query:    85 QLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFIL 144
             QL D++IDKINKPDLPLASG  S +  V IT +  ++ L    ++ S PL W + +  ++
Sbjct:   174 QLCDIEIDKINKPDLPLASGKLSFRNVVIITASSLILGLGFAWIVDSWPLFWTVFISCMV 233

Query:   145 VTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTG 204
              +AY++DLP LRWK+   L AI+ +    V     FF+H+Q  V  R     R LIF T 
Sbjct:   234 ASAYNVDLPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKRPTTFPRPLIFCTA 293

Query:   205 VITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERM 242
             +++  ++  AL KD+ D++GD+++GI++ S+ LG +R+
Sbjct:   294 IVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRV 331

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:4010713740 HST "homogentisate prenyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 9.3e-20, P = 9.3e-20
 Identities = 71/243 (29%), Positives = 120/243 (49%)

Query:     1 MLLGRVKSEDD--NKLKSFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPL-QNLGD 57
             +L+G  +S+D   +++  FQ        + +RF RP+T+ G  +  T++    L +N   
Sbjct:    79 ILVGAAESDDPVLDRIARFQ-------NACWRFLRPHTIRGTALGSTALVTRALIENTHL 131

Query:    58 LTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLT 117
             +  +  ++    ++       Y+  INQ+ D+ IDK+NKP LP+A+GD S+++   + + 
Sbjct:   132 IKWSLVLKALSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIF 191

Query:   118 CAMMSL-AMGIMIGSPPLAWGLI-LWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVG 175
              A+  L  +G   G  P    L  L   L T YS+  P LR KR    A + I    G  
Sbjct:   192 FAIAGLLVVGFNFG--PFITSLYSLGLFLGTIYSV--PPLRMKRFPVAAFLIIATVRGFL 247

Query:   176 IQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSV 235
             + F  + H  +  LG     +  + F T  +T  +L  A+ KDL DV+GD+++ I T + 
Sbjct:   248 LNFGVY-HATRAALGLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTLAT 306

Query:   236 MLG 238
              LG
Sbjct:   307 KLG 309


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.142   0.424    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      276       276   0.00079  115 3  11 22  0.42    33
                                                     33  0.41    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  601 (64 KB)
  Total size of DFA:  184 KB (2106 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.62u 0.10s 21.72t   Elapsed:  00:00:02
  Total cpu time:  21.62u 0.10s 21.72t   Elapsed:  00:00:02
  Start:  Fri May 10 22:31:10 2013   End:  Fri May 10 22:31:12 2013

GO:0004161 "dimethylallyltranstransferase activity" evidence=NAS

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0010355 "homogentisate farnesyltransferase activity" evidence=IDA

GO:0010356 "homogentisate geranylgeranyltransferase activity" evidence=IDA

GO:0010357 "homogentisate solanesyltransferase activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016117 "carotenoid biosynthetic process" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	276
PLN02878	280	PLN02878, PLN02878, homogentisate phytyltransferas	9e-87
PRK12887	308	PRK12887, ubiA, tocopherol phytyltransferase; Revi	3e-43
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	2e-20
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	2e-17
TIGR01476	283	TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chl	9e-12
PRK12884	279	PRK12884, ubiA, prenyltransferase; Reviewed	1e-10
PRK12882	276	PRK12882, ubiA, prenyltransferase; Reviewed	3e-10
PRK07566	314	PRK07566, PRK07566, bacteriochlorophyll/chlorophyl	2e-09
PRK09573	279	PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylgly	5e-09
PRK12872	285	PRK12872, ubiA, prenyltransferase; Reviewed	3e-08
PRK12883	277	PRK12883, ubiA, prenyltransferase UbiA-like protei	4e-08
PRK12392	331	PRK12392, PRK12392, bacteriochlorophyll c synthase	2e-07
PRK08238	479	PRK08238, PRK08238, hypothetical protein; Validate	0.001

>gnl|CDD|178466 PLN02878, PLN02878, homogentisate phytyltransferase

 Score =  260 bits (665), Expect = 9e-87
 Identities = 102/200 (51%), Positives = 142/200 (71%)

Query: 42  IAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKPDLPL 101
           + +TS+  L +++L D +P FF  + + +VPA LM IY+  +NQL D++IDK+NKP LPL
Sbjct: 1   LGITSVSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPL 60

Query: 102 ASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNA 161
           ASG+FS+ TGVAI  + A+MS  MG ++GS PL W L + F+L TAYSI+LP LRWKR+A
Sbjct: 61  ASGEFSVATGVAIVTSFAIMSFGMGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSA 120

Query: 162 FLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHD 221
             AA  I+    V +Q +FF+H+Q +VLGR  V TR LIF T  +   S+  AL KD+ D
Sbjct: 121 VAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFKDIPD 180

Query: 222 VDGDKEYGIRTFSVMLGKER 241
           V+GD+ +GIR+FSV LG++R
Sbjct: 181 VEGDRIFGIRSFSVRLGQKR 200

Length = 280

>gnl|CDD|183813 PRK12887, ubiA, tocopherol phytyltransferase; Reviewed

 Score =  148 bits (377), Expect = 3e-43
 Identities = 74/233 (31%), Positives = 125/233 (53%), Gaps = 9/233 (3%)

Query: 15  KSFQAGFLKNLKSLYRFTRPNTLNGL---VIAVTSICCLPLQNLGDLTPTFFMEVFKTVV 71
           K+        L +L++F+RP+T+ G    V+ +  I      N   L       +    +
Sbjct: 3   KNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALA--NLGLLLGAWI 60

Query: 72  PAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGS 131
                 +Y+  +NQL D++ID+INKP LPLA+G+FS + G  I +   +++L +   +  
Sbjct: 61  ACLCGNVYIVGLNQLTDIEIDRINKPHLPLAAGEFSRRQGQRIVIITGILALILA-ALLG 119

Query: 132 PPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGR 191
           P L   + +  ++ TAYS  LP +R KR   LAA+ I    GV +    F+H Q ++LG 
Sbjct: 120 PWLLITVGISLLIGTAYS--LPPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQ-WLLGG 176

Query: 192 SVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIK 244
           SV+I  ++   T  +   + A A+ KD+ D++GD++Y I TF++ LGK+ + K
Sbjct: 177 SVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFK 229

Length = 308

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score = 87.6 bits (217), Expect = 2e-20
 Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 14/179 (7%)

Query: 73  AALMAIYMTAINQLVDVKIDKI--NKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIG 130
             L+      +N   D +ID    NKPD PL SG  S +  + + L   ++ L + +++G
Sbjct: 32  LLLLQAAGNVLNDYFDYEIDADNPNKPDRPLPSGRISPREALLLGLALLLLGLLLALLLG 91

Query: 131 SPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLG 190
              L  GL+   + +  YS   P LR KR   L  + + + +G+ I          Y +G
Sbjct: 92  PLLLLLGLLGLLLGL-LYS---PPLRLKRRPLLGELVVGLAFGLLILLGA------YAVG 141

Query: 191 RSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNL 249
             +     L+     +  +++   L  D+ DV+GD++ GIRT  V LG++R +     L
Sbjct: 142 GDIPSPLLLLALPVFLLSLAI--LLTNDIRDVEGDRKAGIRTLPVRLGRKRALALYALL 198

Length = 259

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score = 80.0 bits (198), Expect = 2e-17
 Identities = 47/223 (21%), Positives = 86/223 (38%), Gaps = 24/223 (10%)

Query: 22  LKNLKSLYRFTRP-NTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYM 80
           LK L  L R  RP   L  L++       L    L  L            +   L     
Sbjct: 10  LKALLKLLRLDRPIFNLL-LLLPALLGLLLAASGLPSLKLLLLA-----FLAFFLARSAG 63

Query: 81  TAINQLVDVKIDKINKP--DLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGL 138
             IN L D +ID+IN    + PL SG  S+K  + + +   ++ LA+ +++        L
Sbjct: 64  YVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLSL 123

Query: 139 ILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRS 198
               +L  AY         KR  FL  + + + +G+G                  +   +
Sbjct: 124 A-ALVLALAY------PFLKRFTFLPQLVLGLAFGLGALAG-------AAAVGGSLPLLA 169

Query: 199 LIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKER 241
            +     I   +L   ++  + D++GD++ G+++  V+ G ++
Sbjct: 170 WLLLLAAI-LWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKK 211

Length = 289

>gnl|CDD|130541 TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chlorophyll synthetase

 Score = 63.6 bits (155), Expect = 9e-12
 Identities = 43/167 (25%), Positives = 82/167 (49%), Gaps = 10/167 (5%)

Query: 75  LMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPL 134
           L   +  +IN   D  +D IN+P  P+ SG  S++      L   +  L + +++G+  +
Sbjct: 49  LGTGFSQSINDYFDRDVDAINEPQRPIPSGIISLREVRWNWLVLTVAGLLVALVLGNWLI 108

Query: 135 AWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVV 194
               ++  +L   YS  +P ++ KRN +L   ++ + Y  G+ +     I   +  +SVV
Sbjct: 109 VLFTVVGIVLAVIYS--MPPIKLKRNGWLGPPAVGLSY-EGLPWMAGHAIFAPLTWQSVV 165

Query: 195 ITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKER 241
           +   LI++ G     +     L D   V+GD++ G+R+  VM+G +R
Sbjct: 166 VA--LIYSLG-----AHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKR 205

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 283

>gnl|CDD|183812 PRK12884, ubiA, prenyltransferase; Reviewed

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 34/163 (20%), Positives = 75/163 (46%), Gaps = 15/163 (9%)

Query: 82  AINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILW 141
           A+N   D ++D+IN+PD P+ SG  S +  + + +   ++ L    +I        +++ 
Sbjct: 55  ALNDYFDYEVDRINRPDRPIPSGRISRREALLLAILLFILGLIAAYLISPLAFLVVILVS 114

Query: 142 FILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIF 201
            + +  Y+  L     K    +   ++ + +  G+ F F        +G        +I 
Sbjct: 115 VLGIL-YNWKL-----KEYGLIG--NLYVAFLTGMTFIF----GGIAVGELNEA---VIL 159

Query: 202 TTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIK 244
              +   M+L + ++KD+ DV+GD+  G RT +++ G++   +
Sbjct: 160 LAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGR 202

Length = 279

>gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed

 Score = 58.8 bits (143), Expect = 3e-10
 Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 22/164 (13%)

Query: 82  AINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILW 141
           AIN   D +ID+IN+PD P+ SG  S +  +A ++      +A+  ++    LA  L   
Sbjct: 56  AINDYFDREIDRINRPDRPIPSGAVSPRGALAFSILLFAAGVALAFLLPPLCLAIALFNS 115

Query: 142 FILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIF 201
            +LV  Y+  L     K    L   S  + Y  G  F F         G + V T  L  
Sbjct: 116 LLLV-LYAETL-----KGTPGLGNAS--VAYLTGSTFLF---------GGAAVGTEGL-L 157

Query: 202 TTGVI----TCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKER 241
              V+       +LA+ ++KD+ D++GD+  G RT  +++G  +
Sbjct: 158 ALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRK 201

Length = 276

>gnl|CDD|236052 PRK07566, PRK07566, bacteriochlorophyll/chlorophyll a synthase; Reviewed

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 38/173 (21%), Positives = 77/173 (44%), Gaps = 21/173 (12%)

Query: 75  LMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPL 134
           L+      +N   D ++D IN+P  P+ SG  S++  + +     ++ LA+  ++G    
Sbjct: 76  LLCGTSQTLNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLAVAYLLG---- 131

Query: 135 AWGLILWFI-LVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGI-----QFSFFIHIQKYV 188
            W  +   + L  A+    P LR K+N +L   ++ + Y  G+       +F        
Sbjct: 132 PWVFLAALLGLFLAWIYSAPPLRLKQNGWLGNYAVGLSY-EGLPWWAGAAAF---GAGLP 187

Query: 189 LGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKER 241
               V++   L+++ G     +     L D   V+GD++ G+R+  V+ G++ 
Sbjct: 188 SWPIVILA--LLYSLG-----AHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKN 233

Length = 314

>gnl|CDD|181963 PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

 Score = 55.4 bits (134), Expect = 5e-09
 Identities = 39/164 (23%), Positives = 78/164 (47%), Gaps = 20/164 (12%)

Query: 82  AINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILW 141
            IN + D++IDKINKP+ P+ SG  S+K     ++T  ++ L + I I         I  
Sbjct: 55  VINDIYDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGLILSIFIN--------IYA 106

Query: 142 FILVTAYSIDLPF--LRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSL 199
           F++    SI L       K+   +   ++++ Y  G+ F  F  +  + + R +++    
Sbjct: 107 FLIALLNSILLYLYAKDLKKTGLIG--NLIVAYLTGLSF-IFGGLAVFNVLRIIILFLCA 163

Query: 200 IFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMI 243
            F+T        ++ ++KD+ D++GD +  + T  +  G ++  
Sbjct: 164 FFST-------WSREIVKDIEDIEGDLKENVITLPIKYGIKKSW 200

Length = 279

>gnl|CDD|237241 PRK12872, ubiA, prenyltransferase; Reviewed

 Score = 53.0 bits (128), Expect = 3e-08
 Identities = 48/189 (25%), Positives = 83/189 (43%), Gaps = 26/189 (13%)

Query: 60  PTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCA 119
           P  ++ +  T + AA  A+Y   IN L D++ D INKP+        +   G+ + L   
Sbjct: 36  PISWLLLLITFLIAA--AVY--IINYLTDLEEDIINKPER--VVFSETKAYGLFLLLNVL 89

Query: 120 MMSLA--MGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKR-----NAFLAAISIMIGY 172
            + L   +  +IG P  A   I+  IL   YS+     R KR     N  ++ +  +   
Sbjct: 90  GLYLGAYLLAVIGGPKFALIFIIPLILGILYSVFF-KRRLKRIPLFKNLVVSLLWALSPL 148

Query: 173 GVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRT 232
            +G            V    + I   L+     I   S  + ++ D+ D++GD++ G++T
Sbjct: 149 ILG------------VYYYQLTIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKT 196

Query: 233 FSVMLGKER 241
             ++LGKER
Sbjct: 197 LPIVLGKER 205

Length = 285

>gnl|CDD|171796 PRK12883, ubiA, prenyltransferase UbiA-like protein; Reviewed

 Score = 52.8 bits (127), Expect = 4e-08
 Identities = 43/161 (26%), Positives = 78/161 (48%), Gaps = 20/161 (12%)

Query: 83  INQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWF 142
           IN   D +IDKIN+P+ PL  G  S K  +  +L    + LA+  +I      + L  + 
Sbjct: 56  INDYFDYEIDKINRPNRPLPRGAMSRKAALYYSLLLFAVGLALAYLINIEAFLFALGAYV 115

Query: 143 IL-VTAYSID-LPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLI 200
           ++ + A+ +  LPF+     A L   + +  YG        I + +  L   + I   L+
Sbjct: 116 LMFLYAWKLKPLPFIGNVVVALLTGATPI--YGA-------IAVGRIGLAGYLAICAFLV 166

Query: 201 FTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKER 241
                    ++A+ ++KD+ D++GDK  G +T  +++GK+R
Sbjct: 167 ---------NVAREIMKDIEDIEGDKAKGAKTLPIIIGKKR 198

Length = 277

>gnl|CDD|171463 PRK12392, PRK12392, bacteriochlorophyll c synthase; Provisional

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 45/171 (26%), Positives = 79/171 (46%), Gaps = 31/171 (18%)

Query: 82  AINQLVDVKIDKINKPDLPLASGDFSIKTGV---AITLTCAM-MSLAMGIMIGSPPLAWG 137
           ++N   D+++D++N+P  P+ SG  S K  +    I L  A+ + + +G+ IG      G
Sbjct: 68  SVNDYFDLELDRVNEPTRPIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIG------G 121

Query: 138 LILWFI-------LVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFS---FFIHIQKY 187
                I       L  AY    P L+ K+N   +A ++   YG     S    F  I+  
Sbjct: 122 ERGMVIISSILAGLFVAYIYSAPPLKLKKNILTSAPAVGFSYGFITFLSANALFSDIRPE 181

Query: 188 VLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLG 238
           V+           +  G+   M++A  ++ D   V+GDKE G+++ +VM+G
Sbjct: 182 VV-----------WLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIG 221

Length = 331

>gnl|CDD|236195 PRK08238, PRK08238, hypothetical protein; Validated

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 10/85 (11%)

Query: 77  AIYMTAINQLVDVKIDKIN--KPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPL 134
           A+Y+  +N L+D++ D+ +  K   P ASG   I  G+A      +  LA+ + +G   L
Sbjct: 241 AVYI--LNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLALALALGPAFL 298

Query: 135 AWGLILWFILVTAYSIDLPFLRWKR 159
              L+ +  L  AYS     LR KR
Sbjct: 299 LV-LLAYLALTLAYS-----LRLKR 317

Length = 479

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	276
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	100.0
PLN02878	280	homogentisate phytyltransferase	100.0
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	100.0
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	100.0
PLN00012	375	chlorophyll synthetase; Provisional	100.0
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	100.0
PRK12392	331	bacteriochlorophyll c synthase; Provisional	100.0
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	100.0
PRK12882	276	ubiA prenyltransferase; Reviewed	100.0
PRK12884	279	ubiA prenyltransferase; Reviewed	100.0
PRK05951	296	ubiA prenyltransferase; Reviewed	100.0
PRK13106	300	ubiA prenyltransferase; Reviewed	100.0
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	100.0
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	100.0
PRK13595	292	ubiA prenyltransferase; Provisional	100.0
PRK12874	291	ubiA prenyltransferase; Reviewed	100.0
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	100.0
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	100.0
PRK12886	291	ubiA prenyltransferase; Reviewed	100.0
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	100.0
PRK12895	286	ubiA prenyltransferase; Reviewed	100.0
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.98
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.98
PLN02922	315	prenyltransferase	99.98
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.98
PRK04375	296	protoheme IX farnesyltransferase; Provisional	99.97
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.97
PRK12888	284	ubiA prenyltransferase; Reviewed	99.97
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	99.97
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	99.97
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	99.97
PRK13362	306	protoheme IX farnesyltransferase; Provisional	99.97
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	99.97
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.97
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	99.97
PRK13105	282	ubiA prenyltransferase; Reviewed	99.97
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	99.96
PRK12876	300	ubiA prenyltransferase; Reviewed	99.96
PRK12873	294	ubiA prenyltransferase; Reviewed	99.96
PRK12875	282	ubiA prenyltransferase; Reviewed	99.96
PRK12871	297	ubiA prenyltransferase; Reviewed	99.95
PRK12872	285	ubiA prenyltransferase; Reviewed	99.95
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	99.95
PRK13592	299	ubiA prenyltransferase; Provisional	99.94
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.94
PRK13591	307	ubiA prenyltransferase; Provisional	99.93
PLN02776	341	prenyltransferase	99.93
PRK08238	479	hypothetical protein; Validated	99.88
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	99.88
KOG1381	353	consensus Para-hydroxybenzoate-polyprenyl transfer	99.8
KOG1380	409	consensus Heme A farnesyltransferase [Coenzyme tra	99.62
KOG4581	359	consensus Predicted membrane protein [Function unk	99.53
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	93.31
PRK12875	282	ubiA prenyltransferase; Reviewed	92.34
PRK13591	307	ubiA prenyltransferase; Provisional	91.86
PRK13105	282	ubiA prenyltransferase; Reviewed	91.19
PRK12872	285	ubiA prenyltransferase; Reviewed	91.16
PLN02922	315	prenyltransferase	89.75
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	89.54
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	89.05
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	89.04
PRK13592	299	ubiA prenyltransferase; Provisional	88.69
PRK13106	300	ubiA prenyltransferase; Reviewed	87.77
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	86.32
PRK12886	291	ubiA prenyltransferase; Reviewed	85.69
PRK12884	279	ubiA prenyltransferase; Reviewed	85.55
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	85.31
PLN00012	375	chlorophyll synthetase; Provisional	85.18
PRK12392	331	bacteriochlorophyll c synthase; Provisional	85.08
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	84.91
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	84.64
PRK12888	284	ubiA prenyltransferase; Reviewed	84.23
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	83.46
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	81.2
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	80.91
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	80.78
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	80.66
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	80.27
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	80.21

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=100.00  E-value=3.5e-39  Score=292.78  Aligned_cols=240  Identities=30%  Similarity=0.489  Sum_probs=191.6

Q ss_pred             hhhhhhhhhHHHHHHHHhhccchhHHHHHHHHHhhhhccccCCC-CChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhh
Q 023815           14 LKSFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGD-LTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKID   92 (276)
Q Consensus        14 ~~~~~~~~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D   92 (276)
                      |++..++..+.+++++|++|||+.+++.+++..+++++.....+ .+...+...+..+++..+++.+++++|||+|+|.|
T Consensus         2 ~~~~~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD   81 (308)
T PRK12887          2 PKNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEID   81 (308)
T ss_pred             CcchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence            44566777889999999999999999999998887776432222 12112233334456666777777889999999999


Q ss_pred             hhcCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHH
Q 023815           93 KINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGY  172 (276)
Q Consensus        93 ~~~~~~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~  172 (276)
                      ++|||+||+++|++|+++++.+.+++.++++.+++..|++.+.. ..++.+++++||.  ||+|+||+++.++++++...
T Consensus        82 ~inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~~~-~~~~~~lg~~Ys~--pP~rlKr~~~~~~~~i~~~~  158 (308)
T PRK12887         82 RINKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLLIT-VGISLLIGTAYSL--PPIRLKRFPLLAALCIFTVR  158 (308)
T ss_pred             hcCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHcC--CchhhcccchhHHHHHHHHH
Confidence            99999999999999999999999999999999998888765543 4577789999999  99999999999988888888


Q ss_pred             hhhHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHH
Q 023815          173 GVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKN  252 (276)
Q Consensus       173 g~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~  252 (276)
                      |..+.++.+...+.. .+....+++..++...++++++.++++.||++|+|+|++.|+||+|+++|+|++.+++..++.+
T Consensus       159 g~i~~~g~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~  237 (308)
T PRK12887        159 GVIVNLGLFLHFQWL-LGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTA  237 (308)
T ss_pred             HHHHHHHHHHHHHHH-HhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHH
Confidence            877777766542221 2222234555566556777888999999999999999999999999999999999999999888


Q ss_pred             hhhhh
Q 023815          253 MDLED  257 (276)
Q Consensus       253 ~~~~~  257 (276)
                      +|+..
T Consensus       238 ~y~~~  242 (308)
T PRK12887        238 CYLGM  242 (308)
T ss_pred             HHHHH
Confidence            88754

>PLN02878 homogentisate phytyltransferase

Probab=100.00  E-value=6.9e-39  Score=282.60  Aligned_cols=208  Identities=49%  Similarity=0.822  Sum_probs=180.3

Q ss_pred             hhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcCCCCccccCCCCHHHHHHHHHHHHHHHHHHHH
Q 023815           48 CCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGI  127 (276)
Q Consensus        48 ~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~~~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~  127 (276)
                      +++|.+...|.++..+..++.+++++++++.|..++|||+|+|+||+|||+||+|||++|+++++.+...+.++|+.+++
T Consensus         7 ~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~la~   86 (280)
T PLN02878          7 SLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMGW   86 (280)
T ss_pred             hHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            45565555565555555666778999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhHHHHHHHHHHHHhhcccccchhHHHHHHHHHH
Q 023815          128 MIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVIT  207 (276)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  207 (276)
                      ..|.+++.+.+..++++++.||.++||+|+||.+++...++....++...+++|.++++.++|++..+++.+++...+++
T Consensus        87 ~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~~  166 (280)
T PLN02878         87 IVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMC  166 (280)
T ss_pred             HHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHHH
Confidence            99987777777777788999998889999999999988888777777788899888788888864445555666655777


Q ss_pred             HHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhh
Q 023815          208 CMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL  255 (276)
Q Consensus       208 ~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~  255 (276)
                      ++.+++++.||++|+||||+.|++|+|+++|+|++.+++..++.++|.
T Consensus       167 ~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~  214 (280)
T PLN02878        167 FFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYA  214 (280)
T ss_pred             HHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHH
Confidence            788899999999999999999999999999999999999999999998

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=100.00  E-value=3.4e-36  Score=274.43  Aligned_cols=240  Identities=18%  Similarity=0.203  Sum_probs=181.7

Q ss_pred             CCCCccchhhh-hhhhhhhHHHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChH-HHHHHHHHHHHHHHHHHHHhH
Q 023815            5 RVKSEDDNKLK-SFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPT-FFMEVFKTVVPAALMAIYMTA   82 (276)
Q Consensus         5 ~~~~~~~~~~~-~~~~~~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~   82 (276)
                      .|.+||++..+ +=.+...+++|+|++++||+++..++++++.|++.+. . .+.... .+..++.++++..+.++++|.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~-~-~~~~~~~~~~~~l~~~l~~~l~~~~~~~   83 (314)
T PRK07566          6 ENTSKPRQLLGPKGASPTTSIWKARLQLMKPITWFPPMWAFLCGAVSSG-A-FGWTLENVLKLLAGMLLAGPLLCGTSQT   83 (314)
T ss_pred             cCccccccccccccccccchHHHHHHHHhCCcchHHHHHHHHHHHHHcC-C-CCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566666221 1224556789999999999999999998888877642 2 122221 111122234666778999999


Q ss_pred             hhcccchhhhhhcCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchh
Q 023815           83 INQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAF  162 (276)
Q Consensus        83 ~Nd~~D~~~D~~~~~~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~  162 (276)
                      +|||+|+|+|++|+|+||+++|++++++++.++.++.++++.+++.+|++...++ +.+++.+++||.  ||+++||+++
T Consensus        84 ~Nd~~D~~~D~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-l~~~~~~~~Yt~--gP~~lK~~~~  160 (314)
T PRK07566         84 LNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAA-LLGLFLAWIYSA--PPLRLKQNGW  160 (314)
T ss_pred             HhhhhccCccccCCCCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHH-HHHHHHHHHhcC--Cccccccccc
Confidence            9999999999999999999999999999999999999999999888887665443 456677899999  9999999998


Q ss_pred             hhHHHHHHHHhhhHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhH
Q 023815          163 LAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERM  242 (276)
Q Consensus       163 ~~~~~v~~~~g~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a  242 (276)
                      ++++++|..+|.++.+.++.+    +.+.  ..++..++...+.+++..++++.||++|+|+|+++|+||+|+++|++++
T Consensus       161 ~g~i~vg~~~g~~~~~~g~~~----~~~~--~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a  234 (314)
T PRK07566        161 LGNYAVGLSYEGLPWWAGAAA----FGAG--LPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNA  234 (314)
T ss_pred             hhhHHHHHHHHHHHHHHHHHH----hccC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHH
Confidence            899999998876555554432    1111  2333344444455566778899999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 023815          243 IKELLNLFKNMDL  255 (276)
Q Consensus       243 ~~l~~~l~~~~~~  255 (276)
                      ++++..++.++++
T Consensus       235 ~~l~~~l~~~~~~  247 (314)
T PRK07566        235 ARIACVVIDLFQL  247 (314)
T ss_pred             HHHHHHHHHHHHH
Confidence            9998777666655

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=100.00  E-value=1.9e-36  Score=272.69  Aligned_cols=218  Identities=18%  Similarity=0.245  Sum_probs=171.8

Q ss_pred             HHHHHhhccchhHHHHHHHHHhhhhccccCCC-CChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcCCCCccccC
Q 023815           26 KSLYRFTRPNTLNGLVIAVTSICCLPLQNLGD-LTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASG  104 (276)
Q Consensus        26 ~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~~~Rpl~~G  104 (276)
                      |++++++||+++..++++++.|.+++.....+ +++..  .++.++++..+.+.++|.+|||+|+|+|++|+|+||+++|
T Consensus         1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~~~--~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G   78 (283)
T TIGR01476         1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHWWL--MLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSG   78 (283)
T ss_pred             CceeEecCCceehhHHHHHHHHHHhccCCCCcchhHHH--HHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCC
Confidence            46889999999999999999999887322122 33322  2222456778899999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhHHHHHHHHH
Q 023815          105 DFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHI  184 (276)
Q Consensus       105 ~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~~  184 (276)
                      ++|+++++....++..+++++++.++.+......+++++.+++||.  ||+++||+++++++.++..++..+....+.  
T Consensus        79 ~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~Ys~--~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~--  154 (283)
T TIGR01476        79 IISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLAVIYSM--PPIKLKRNGWLGPPAVGLSYEGLPWMAGHA--  154 (283)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecC--chhhhccCCCccHHHHHHHHHHHHHHHHHH--
Confidence            9999999999999999999998887766533344566778999999  999999999889999998877544444332  


Q ss_pred             HHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhh
Q 023815          185 QKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL  255 (276)
Q Consensus       185 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~  255 (276)
                         ..+   ..++..++.....++++.++++.||+||+|+|+++|+||+|+++|+|++++++..++..+++
T Consensus       155 ---~~~---~~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~  219 (283)
T TIGR01476       155 ---IFA---PLTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQA  219 (283)
T ss_pred             ---HhC---CCCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHH
Confidence               222   13333343334555677888999999999999999999999999999999998887666664

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PLN00012 chlorophyll synthetase; Provisional

Probab=100.00  E-value=2.3e-35  Score=273.16  Aligned_cols=223  Identities=20%  Similarity=0.234  Sum_probs=168.4

Q ss_pred             hhhHHHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChH-HHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcCCC
Q 023815           20 GFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPT-FFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKPD   98 (276)
Q Consensus        20 ~~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~~~   98 (276)
                      ..++++|+|++++||++|..+++++++|++.+ +++ ++... +...++.++++..+.++++|.+|||+|+|.|++|+|+
T Consensus        80 ~~~~~~k~~l~L~RP~t~~~~~~~v~~G~~~~-g~~-~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~~  157 (375)
T PLN00012         80 QETDIWKIRLQLTKPVTWPPLVWGVLCGAAAS-GNF-HWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEPY  157 (375)
T ss_pred             cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-CCC-CchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCCCC
Confidence            44567999999999999999999999998853 322 22211 1111233456677888999999999999999999999


Q ss_pred             CccccCCCCHHHHHHHHHHHHHHHHHHHHHh-------chhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHH
Q 023815           99 LPLASGDFSIKTGVAITLTCAMMSLAMGIMI-------GSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIG  171 (276)
Q Consensus        99 Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~-------~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~  171 (276)
                      ||+++|++++++++.....+..+++.+++.+       +++.+. ..+++++++++||.  ||+++||++++|++.+|..
T Consensus       158 Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~-l~l~gi~l~~~YS~--pPl~lKr~~~~G~v~lG~~  234 (375)
T PLN00012        158 RPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFY-LALGGSLLSYIYSA--PPLKLKQNGWIGNYALGAS  234 (375)
T ss_pred             CCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH-HHHHHHHHhhhhcC--CchhhhHhccHhHHHHHHH
Confidence            9999999999999998777777666666443       222333 23456677899999  9999999999899999888


Q ss_pred             HhhhHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHH
Q 023815          172 YGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFK  251 (276)
Q Consensus       172 ~g~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~  251 (276)
                      ++.++..+++.     +.|   .+++..++...+.++++.++++.||++|+|+|+++|++|+||++|++++++++..++.
T Consensus       235 ~~~lp~~~g~a-----~~g---~~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~  306 (375)
T PLN00012        235 YISLPWWAGQA-----LFG---TLTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSID  306 (375)
T ss_pred             HHHHHHHHHHH-----HcC---CCCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHH
Confidence            87544433331     334   2344444444566678889999999999999999999999999999999999876555


Q ss_pred             Hhhh
Q 023815          252 NMDL  255 (276)
Q Consensus       252 ~~~~  255 (276)
                      +..+
T Consensus       307 l~~l  310 (375)
T PLN00012        307 ITQL  310 (375)
T ss_pred             HHHH
Confidence            5444

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=100.00  E-value=4.4e-35  Score=266.21  Aligned_cols=224  Identities=19%  Similarity=0.260  Sum_probs=171.8

Q ss_pred             hhhHHHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChH-HHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcCCC
Q 023815           20 GFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPT-FFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKPD   98 (276)
Q Consensus        20 ~~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~~~   98 (276)
                      ...+++|+|++++||+++..++++++.|+..+ +++ +++.. ....++.++++..+.++++|.+|||+|+|.|+.|+|+
T Consensus        11 ~~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~-~~~-~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~~~   88 (306)
T TIGR02056        11 GETNIWKIRLQLMKPITWIPLIWGVVCGAAAS-GNF-HWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINEPY   88 (306)
T ss_pred             cchhHHHHHHHHcChHhhHHHHHHHHHHHHHc-CCC-CcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCCC
Confidence            45677899999999999999999998888764 222 22111 1111222346667889999999999999999999999


Q ss_pred             CccccCCCCHHHHHHHHHHHHHHHHHHHHHhch------hHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHH
Q 023815           99 LPLASGDFSIKTGVAITLTCAMMSLAMGIMIGS------PPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGY  172 (276)
Q Consensus        99 Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~~~------~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~  172 (276)
                      ||+++|++++++++..++.+.++++++++.+..      +..+...+++++.+++||.  ||+++||++++|++.++..+
T Consensus        89 Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~~~~~~~~Yt~--gP~~lk~~g~~G~i~vg~~~  166 (306)
T TIGR02056        89 RPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALFGSFIAFIYSA--PPLKLKQNGWLGNFALGASY  166 (306)
T ss_pred             CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcC--ChhhhhhcccHHHHHHHHHH
Confidence            999999999999999999888888887765421      2223334566778999999  99999999988999998888


Q ss_pred             hhhHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHH
Q 023815          173 GVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKN  252 (276)
Q Consensus       173 g~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~  252 (276)
                      +..+..+++.     ..|   ++++..++.....++++.++++.||++|+|+|+++|+||+|+++|+|++++++..++..
T Consensus       167 ~~~~~~~~~a-----~~g---~~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~  238 (306)
T TIGR02056       167 IALPWWAGHA-----LFG---ELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDI  238 (306)
T ss_pred             HHHHHHHHHH-----HhC---CCcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHHHH
Confidence            7544444332     233   23444444445666788899999999999999999999999999999999999876655


Q ss_pred             hhh
Q 023815          253 MDL  255 (276)
Q Consensus       253 ~~~  255 (276)
                      ++.
T Consensus       239 ~~~  241 (306)
T TIGR02056       239 FQG  241 (306)
T ss_pred             HHH
Confidence            443

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=100.00  E-value=6.4e-34  Score=260.15  Aligned_cols=223  Identities=19%  Similarity=0.349  Sum_probs=164.1

Q ss_pred             hhhHHHHHHHHhhccchhHHHHHHHHHhhhhccccC-CCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcCCC
Q 023815           20 GFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNL-GDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKPD   98 (276)
Q Consensus        20 ~~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~~~   98 (276)
                      .+.+++|+|++++||+++. ..++.+.|.++|.++. ++.....+ .+..++....+...++|++|||+|+|+|++|+|.
T Consensus         7 ~~~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~~~l-~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rt   84 (331)
T PRK12392          7 GFVDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHDYLL-LLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPT   84 (331)
T ss_pred             chhHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhHHHH-HHHHHHHHHHHHHHHHhHHhcceeecccccCCCC
Confidence            3567799999999999887 6666666766775432 22221111 1111223334556678999999999999999999


Q ss_pred             CccccCCCCHHHHHHHHHHHHHHHHHHHHHhch-------hHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHH
Q 023815           99 LPLASGDFSIKTGVAITLTCAMMSLAMGIMIGS-------PPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIG  171 (276)
Q Consensus        99 Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~~~-------~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~  171 (276)
                      ||+++|++|+++++...+.+..+++.++..++.       +..++..+++++++++||.  ||+++||+++++++.+|..
T Consensus        85 Rpl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~--~P~~lKr~~~~g~~~vGl~  162 (331)
T PRK12392         85 RPIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSA--PPLKLKKNILTSAPAVGFS  162 (331)
T ss_pred             CCCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcC--CchhhhccchhHHHHHHHH
Confidence            999999999999999999999998888766542       2223333456778899999  9999999998899999998


Q ss_pred             HhhhHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHH
Q 023815          172 YGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFK  251 (276)
Q Consensus       172 ~g~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~  251 (276)
                      ++..+.....     ...+.   .++..++.....++++.+.+++||++|+|+|++.|+||+|+++|++++.+++.....
T Consensus       163 ~~~~~~~~~~-----a~~g~---~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~  234 (331)
T PRK12392        163 YGFITFLSAN-----ALFSD---IRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIID  234 (331)
T ss_pred             HHHHHHHHHH-----HHhcC---CCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHH
Confidence            8754433221     13342   333334444456678889999999999999999999999999999999888877764


Q ss_pred             Hhh
Q 023815          252 NMD  254 (276)
Q Consensus       252 ~~~  254 (276)
                      +..
T Consensus       235 ~~~  237 (331)
T PRK12392        235 LVF  237 (331)
T ss_pred             HHH
Confidence            433

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=100.00  E-value=1.9e-34  Score=259.15  Aligned_cols=211  Identities=20%  Similarity=0.289  Sum_probs=168.0

Q ss_pred             HHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcCCCCcccc
Q 023815           24 NLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKPDLPLAS  103 (276)
Q Consensus        24 ~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~~~Rpl~~  103 (276)
                      ++|+|++++||+++..++++.+.|++++.+..  .++..+   +.+.++.++.++++|++|||+|+|.|++|+|+||+++
T Consensus         2 ~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~--~~~~~~---~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~s   76 (279)
T PRK09573          2 SIKAYFELIRPKNCIGASIGAIIGYLIASNFK--IDLKGI---ILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPS   76 (279)
T ss_pred             CHHHHHHHHhHhHHHHHHHHHHHHHHHHccCC--cchHHH---HHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCC
Confidence            37899999999999999999999988885432  232221   1235677889999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhHHHHHHHH
Q 023815          104 GDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIH  183 (276)
Q Consensus       104 G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~  183 (276)
                      |++++++++.++..+.++++.+++.+|+....++ +.+.+..++||.     ++||++.++|+++|..+|..+..++.. 
T Consensus        77 G~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Ys~-----~lKr~~~~~~~~vg~~~G~~~~~g~~~-  149 (279)
T PRK09573         77 GRISLKEAKIFSITLFIVGLILSIFINIYAFLIA-LLNSILLYLYAK-----DLKKTGLIGNLIVAYLTGLSFIFGGLA-  149 (279)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----HHhcCCcHHHHHHHHHHHHHHHHHHHH-
Confidence            9999999999999999999999888887666554 455567889997     799999889999999999665444322 


Q ss_pred             HHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhh
Q 023815          184 IQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL  255 (276)
Q Consensus       184 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~  255 (276)
                          +.+   ....  ++.....++|+++.++.||++|+|+|+++|+||+|+++|+|++.++.........+
T Consensus       150 ----~~~---~~~~--~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~  212 (279)
T PRK09573        150 ----VFN---VLRI--IILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIV  212 (279)
T ss_pred             ----Hcc---chHH--HHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHH
Confidence                112   1122  22223445667788999999999999999999999999999999998877766555

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.2e-33  Score=253.49  Aligned_cols=213  Identities=21%  Similarity=0.272  Sum_probs=167.2

Q ss_pred             HHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcCCCCcccc
Q 023815           24 NLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKPDLPLAS  103 (276)
Q Consensus        24 ~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~~~Rpl~~  103 (276)
                      ++|+|++++||+++..+.++.+.|++++.+...  +....   +.++++.++.++++|++||++|+|.|++|+|+||+++
T Consensus         3 ~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~~~--~~~~~---~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~   77 (276)
T PRK12882          3 TVRGYLELTRPVNAVVAGVAAFIGAFIAGGILS--SPSLT---GLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPS   77 (276)
T ss_pred             CHHHHHHHHhhhHHHHHHHHHHHHHHHhccccc--hHHHH---HHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCC
Confidence            478999999999999999999999988844321  11111   1235677889999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhHHHHHHHH
Q 023815          104 GDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIH  183 (276)
Q Consensus       104 G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~  183 (276)
                      |++|++|++.++..+.++|+++++.+++....++ ..+.+..++||.     |+||++.++|++++...|..+..+..  
T Consensus        78 G~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~-~~~~~~~~~Yt~-----~lK~~~~~g~~~vg~~~g~~~~~g~~--  149 (276)
T PRK12882         78 GAVSPRGALAFSILLFAAGVALAFLLPPLCLAIA-LFNSLLLVLYAE-----TLKGTPGLGNASVAYLTGSTFLFGGA--  149 (276)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----HHhcccchhHHHHHHHHHHHHHHHHH--
Confidence            9999999999999999999999988887665443 455566889998     89999988999999888754444432  


Q ss_pred             HHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhh
Q 023815          184 IQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL  255 (276)
Q Consensus       184 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~  255 (276)
                          ..+.  ......+......++++.+++++||++|+|+|+++|+||+|+++|+|++.+++..+++...+
T Consensus       150 ----~~~~--~~~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~  215 (276)
T PRK12882        150 ----AVGT--EGLLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVA  215 (276)
T ss_pred             ----Hhcc--cchHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHH
Confidence                2221  11111222233445567789999999999999999999999999999999998888776555

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=5e-33  Score=249.91  Aligned_cols=212  Identities=22%  Similarity=0.336  Sum_probs=167.9

Q ss_pred             HHHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcCCCCccc
Q 023815           23 KNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKPDLPLA  102 (276)
Q Consensus        23 ~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~~~Rpl~  102 (276)
                      +++|+|++++||+++..+.++.+.|.++|.+..+  ....+    ...++.++.++++|++||++|+|+|++|+|+||++
T Consensus         2 ~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~~~--~~~~~----l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~   75 (279)
T PRK12884          2 TKMKAYLELLRPEHGLMAGIAVVLGAIIALGGLP--LDEAL----LGFLTAFFASGSANALNDYFDYEVDRINRPDRPIP   75 (279)
T ss_pred             hHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCc--hHHHH----HHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCC
Confidence            4789999999999999999999899988854322  12221    23467788999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhHHHHHHH
Q 023815          103 SGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFI  182 (276)
Q Consensus       103 ~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~  182 (276)
                      +|++++++++.++.++.+++++++..+|+....+. +++.+.+++||.     ++||++++++++++..+|..+..++..
T Consensus        76 ~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~Ys~-----~lK~~~~~~~~~~~~~~~~~~~~g~~~  149 (279)
T PRK12884         76 SGRISRREALLLAILLFILGLIAAYLISPLAFLVV-ILVSVLGILYNW-----KLKEYGLIGNLYVAFLTGMTFIFGGIA  149 (279)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----hhccccchhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999888887665543 456677899998     799999889999998887443333221


Q ss_pred             HHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhh
Q 023815          183 HIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL  255 (276)
Q Consensus       183 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~  255 (276)
                            .+.   .+...++.....++|+.+.++.+|++|+|+|+++|+||+|+++|+|++.+++..++...++
T Consensus       150 ------~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~  213 (279)
T PRK12884        150 ------VGE---LNEAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVL  213 (279)
T ss_pred             ------hCC---CchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHH
Confidence                  121   1112333334556677788999999999999999999999999999999988777666555

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.7e-32  Score=248.28  Aligned_cols=218  Identities=16%  Similarity=0.177  Sum_probs=166.9

Q ss_pred             HHHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcC-----C
Q 023815           23 KNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINK-----P   97 (276)
Q Consensus        23 ~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~-----~   97 (276)
                      +++|.+++.+||+++..+..+++.|.++|.....++++....   .++++.++++.++|.+|||+|+|.|..++     |
T Consensus         2 ~~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~~~l---l~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~   78 (296)
T PRK05951          2 QNAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPLLGA---LMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYR   78 (296)
T ss_pred             ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHH---HHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCC
Confidence            468999999999999999999999998886544466654322   23578889999999999999966555444     6


Q ss_pred             CCccccCCCCHHHHHHHHHHHHHHHHHHHHH----hchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHh
Q 023815           98 DLPLASGDFSIKTGVAITLTCAMMSLAMGIM----IGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYG  173 (276)
Q Consensus        98 ~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~----~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g  173 (276)
                      +||+++|++|+++++..+.++..+++.++..    .+.+.+ ...+++.+.++.||.  ||+++|+++ +|++.++..+|
T Consensus        79 ~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l-~l~~~~~~~~~~Yt~--~P~~lky~g-lGe~~v~~~~g  154 (296)
T PRK05951         79 QHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAV-TLALLGVFLWTCYMG--PPFFLKYRW-LGEHLVFYAWS  154 (296)
T ss_pred             CCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHHHHHHHHHHHcC--CCcccCCCC-chHHHHHHHHH
Confidence            8999999999999999998877776655432    243333 334567788999999  999999998 69999999999


Q ss_pred             hhHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHh
Q 023815          174 VGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNM  253 (276)
Q Consensus       174 ~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~  253 (276)
                      ..++++.++. ++   +   .++...+.......+++.+..+.||+||+|+|+++|+||+|+++|+|++ ++...+...+
T Consensus       155 ~~~vlg~~~~-~~---~---~~~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~  226 (296)
T PRK05951        155 HMLVMGLIYV-WL---G---NLSSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSP  226 (296)
T ss_pred             HHHHHHHHHH-Hh---C---cccHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHH
Confidence            8787877664 11   2   2233334434455566777889999999999999999999999999999 5554544444


Q ss_pred             hh
Q 023815          254 DL  255 (276)
Q Consensus       254 ~~  255 (276)
                      |+
T Consensus       227 ~~  228 (296)
T PRK05951        227 YV  228 (296)
T ss_pred             HH
Confidence            43

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=7.3e-33  Score=250.21  Aligned_cols=225  Identities=15%  Similarity=0.134  Sum_probs=168.8

Q ss_pred             hhhhhhhhhhhHHHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhh
Q 023815           12 NKLKSFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKI   91 (276)
Q Consensus        12 ~~~~~~~~~~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~   91 (276)
                      ++|++... .+.++|+|+|++||++....+.+.+.|+.+|.++.+  ++..+   +.+.++.+++++++|++||++|+|+
T Consensus         3 ~~~~~~~~-~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~--~~~~l---~l~~lg~~l~~~a~~~~Nd~~D~di   76 (300)
T PRK13106          3 WDPGGLNN-TRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIP--PISTL---ILIFLALFFLRTAGMTNDNLADLEI   76 (300)
T ss_pred             CCcccchh-hHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCC--CHHHH---HHHHHHHHHHHHHHHHHHhhHHhcc
Confidence            35655443 556899999999999998888888889888855432  23221   1235677889999999999999999


Q ss_pred             hhhcC--CCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHH
Q 023815           92 DKINK--PDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIM  169 (276)
Q Consensus        92 D~~~~--~~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~  169 (276)
                      |++|+  ++||+++|++|++|++.+..++.+.+++++..+|+.+..+.. .+.+..+.|+.      +||+++++++++|
T Consensus        77 D~~~~RT~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~lg  149 (300)
T PRK13106         77 DAKNPRTKNRPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLSP-IVALIAMSYPY------MKRYTAFANYHLA  149 (300)
T ss_pred             ccCCCccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhH------HhcCCcchHHHHH
Confidence            99985  589999999999999999877777777777778876665543 34445677875      8999999999999


Q ss_pred             HHHhhhHHHHHHHHHHHHhhcccc-----cchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHH
Q 023815          170 IGYGVGIQFSFFIHIQKYVLGRSV-----VITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIK  244 (276)
Q Consensus       170 ~~~g~~~~l~~~~~~~~~~~g~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~  244 (276)
                      ..+|..+..+ +.+    +.|...     ..+...++.....++|+.+++++|+++|+|+|+++|+||+|+++| +++++
T Consensus       150 ~~~~~~~~~G-~~a----~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~  223 (300)
T PRK13106        150 SIQGLAVFSG-AVA----VLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALT  223 (300)
T ss_pred             HHHHHHHHHH-HHH----HcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHH
Confidence            9988544433 432    223110     011112222234567888999999999999999999999999999 88999


Q ss_pred             HHHHHHHHhhh
Q 023815          245 ELLNLFKNMDL  255 (276)
Q Consensus       245 l~~~l~~~~~~  255 (276)
                      ++..++.++.+
T Consensus       224 ~~~~~~~~~v~  234 (300)
T PRK13106        224 FAGLNQLFSVV  234 (300)
T ss_pred             HHHHHHHHHHH
Confidence            88888777666

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=100.00  E-value=1.1e-32  Score=247.38  Aligned_cols=208  Identities=23%  Similarity=0.295  Sum_probs=160.6

Q ss_pred             HHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcCCCCcccc
Q 023815           24 NLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKPDLPLAS  103 (276)
Q Consensus        24 ~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~~~Rpl~~  103 (276)
                      ++|+|++++||+++..+.++.+.|++++.++.++  +....   ...++.++.++++|++|||+|+|+|+.|+|+||+++
T Consensus         2 ~l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~~--~~~~~---l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~s   76 (277)
T PRK12883          2 ELKAFIEITRPHNCILAGIVGILGSLVALGGIPP--IKTLI---LIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPR   76 (277)
T ss_pred             CHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCc--HHHHH---HHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCC
Confidence            3789999999999999998888898887443222  22111   123556677888999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhHHHHHHHH
Q 023815          104 GDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIH  183 (276)
Q Consensus       104 G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~  183 (276)
                      |++++++++.++.++.++|+.+++..|+..+.++ +.+.+.+++|+.     ++|++++++|+++|..+|..+..+ +.+
T Consensus        77 G~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~-~~~~~~~~~Y~~-----~~k~~~~lg~~~vg~~~g~~~~~g-~~a  149 (277)
T PRK12883         77 GAMSRKAALYYSLLLFAVGLALAYLINIEAFLFA-LGAYVLMFLYAW-----KLKPLPFIGNVVVALLTGATPIYG-AIA  149 (277)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhh-----cccCCcchhhHHHHHHHHHHHHHH-HHH
Confidence            9999999999999999999998888887666544 455667899998     889998889999999998655433 221


Q ss_pred             HHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHH
Q 023815          184 IQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKN  252 (276)
Q Consensus       184 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~  252 (276)
                          + +   ..+...+.. .+.+++..++++.||++|+|+|+++|+||+|+++|+|+++++...+...
T Consensus       150 ----~-~---~~~~~~~~~-~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~~~~  209 (277)
T PRK12883        150 ----V-G---RIGLAGYLA-ICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIFGVL  209 (277)
T ss_pred             ----h-c---cccHHHHHH-HHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHHHHH
Confidence                1 2   122222222 2344456678899999999999999999999999999999987766433

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=100.00  E-value=2e-32  Score=249.51  Aligned_cols=224  Identities=16%  Similarity=0.080  Sum_probs=171.2

Q ss_pred             HHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcC----CCCc
Q 023815           25 LKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINK----PDLP  100 (276)
Q Consensus        25 l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~----~~Rp  100 (276)
                      +|.|++++||++...++++++.|.++|.....++++....   .++++.++.|.++|.+|||+|++.|..++    ++|+
T Consensus         3 ~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~~~l---l~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~   79 (317)
T PRK13387          3 AKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWLLFL---AFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNG   79 (317)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHHHHH---HHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcch
Confidence            6889999999999999999999999986444456654322   23567788999999999999997655443    5799


Q ss_pred             cccCCCCHHHHHHHHHHHHHHHHHHH----HHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhH
Q 023815          101 LASGDFSIKTGVAITLTCAMMSLAMG----IMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGI  176 (276)
Q Consensus       101 l~~G~is~~~a~~~~~~~~~~g~~l~----~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~  176 (276)
                      +++|.+++|+++..+..+..++++++    +..|++. +...+++++.+++||.  ||+++||++ +||+.++..+|..+
T Consensus        80 i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~~~-l~igl~g~~~~~~Yt~--gP~~l~y~g-LGe~~v~i~~G~~~  155 (317)
T PRK13387         80 IGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSWLL-LVIGLICFAIGILYTG--GPLPLSRMP-LGEIFSGLTMGFGI  155 (317)
T ss_pred             hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH-HHHHHHHHHHhhhhcC--CCcccccCc-cHHHHHHHHHHHHH
Confidence            99999999999999988888777644    4455433 3445678888999999  999999999 69999999999777


Q ss_pred             HHHHHHHHHHHhhccc--------cc--chhH----HHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhH
Q 023815          177 QFSFFIHIQKYVLGRS--------VV--ITRS----LIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERM  242 (276)
Q Consensus       177 ~l~~~~~~~~~~~g~~--------~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a  242 (276)
                      ..+.++. ++...+..        .+  ++..    .++......+.+.++++.||+||+|+|+++|+||+|+++|+|++
T Consensus       156 v~g~~yv-~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a  234 (317)
T PRK13387        156 FLLAVYI-NTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKG  234 (317)
T ss_pred             HHHHHHH-hcCCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhH
Confidence            7776553 22111100        00  0000    11133455566677899999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhh
Q 023815          243 IKELLNLFKNMDLE  256 (276)
Q Consensus       243 ~~l~~~l~~~~~~~  256 (276)
                      +++...+...+|+.
T Consensus       235 ~~l~~~l~~~a~l~  248 (317)
T PRK13387        235 VVLFAILFYASYLA  248 (317)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998888873

>PRK13595 ubiA prenyltransferase; Provisional

Probab=100.00  E-value=4.8e-32  Score=241.88  Aligned_cols=218  Identities=19%  Similarity=0.225  Sum_probs=162.7

Q ss_pred             hhHHHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcCCCCc
Q 023815           21 FLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKPDLP  100 (276)
Q Consensus        21 ~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~~~Rp  100 (276)
                      ....++.+++.+||.+|+.+..++.+|+..+. ...+..+..+.   .++......+.++|++|||+|+|+|++|+|+|+
T Consensus         8 ~~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g-~~~~~~~~~~~---l~~~~~~p~n~~~~giND~fD~eiDa~Npr~~~   83 (292)
T PRK13595          8 ILLPLRRLLLISRPALWVNTVGTLVTGVWLTG-HLYTLDPGVLP---LLLYLTLPFNLLIYGLNDLADRETDAASPRKGG   83 (292)
T ss_pred             hhhHHHHHHHHhCcHHHHHHHHHHHHHHHHhc-CcccchhHHHH---HHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCC
Confidence            34668889999999999999999999997763 22232113221   124556678889999999999999999999999


Q ss_pred             cccCCCCHHHHHHHHHHHHHH----HHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhH
Q 023815          101 LASGDFSIKTGVAITLTCAMM----SLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGI  176 (276)
Q Consensus       101 l~~G~is~~~a~~~~~~~~~~----g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~  176 (276)
                      +++|++++++++.+...+..+    ++.+++..|+....+ ..++.+++++||.  ||+|+|+++++++++. ...|.  
T Consensus        84 i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l-~~v~~~l~~~YS~--pPlRlK~rp~l~~l~~-~~~g~--  157 (292)
T PRK13595         84 WQGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLL-LLLYAALFVGYSL--PPLRFKARPFLDGLSN-AAYAL--  157 (292)
T ss_pred             CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHcc--CccchhcCcchhHHHH-HHHHH--
Confidence            999999999999876554444    455566677655543 3466688999999  9999999999988775 34442  


Q ss_pred             HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhhh
Q 023815          177 QFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDLE  256 (276)
Q Consensus       177 ~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~~  256 (276)
                      +.+...    .+.|.   ......+  ....+|..+++++++++|+|+||+.|+||+|+++|+|++.+++..+++++.++
T Consensus       158 p~~~~~----~~~g~---~~~~~~l--~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~  228 (292)
T PRK13595        158 PLALPA----LALGA---PVPWPPL--LALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGAL  228 (292)
T ss_pred             HHHHHH----HHcCC---cchHHHH--HHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHH
Confidence            222221    13342   1122222  23345678999999999999999999999999999999999999998877765


Q ss_pred             h
Q 023815          257 D  257 (276)
Q Consensus       257 ~  257 (276)
                      .
T Consensus       229 ~  229 (292)
T PRK13595        229 L  229 (292)
T ss_pred             H
Confidence            5

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=8e-32  Score=242.97  Aligned_cols=216  Identities=20%  Similarity=0.235  Sum_probs=165.7

Q ss_pred             hhhhHHHHHHHHhhccchhHHHHHHHHHhhhhcccc---CCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhc
Q 023815           19 AGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQN---LGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKIN   95 (276)
Q Consensus        19 ~~~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~   95 (276)
                      +++++++|+|+|++||++.+.++...+.|.++|...   ....++..+   +.+.++.+++++++|++|||+|+|.|++|
T Consensus         2 ~~~~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~~~~---~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~   78 (291)
T PRK12874          2 KKFTKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGFKLL---ILGILAAVSARNFAMAFNRLVDRDIDKDN   78 (291)
T ss_pred             chHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCHHHH---HHHHHHHHHHHHHHHHHHhhhhhccccCC
Confidence            356678999999999999998888888888777421   112333322   12356777889999999999999999999


Q ss_pred             C--CCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHh
Q 023815           96 K--PDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYG  173 (276)
Q Consensus        96 ~--~~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g  173 (276)
                      +  ++||+++|++|++|++.+++.+.++++.+++.+|+.+..+. +..+.....|+.      +||++.+++++.|...|
T Consensus        79 ~RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~~g~~~~  151 (291)
T PRK12874         79 PRTANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLS-FPFLIVLGGYSY------FKRFSSLAHLVLGLSLG  151 (291)
T ss_pred             CCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhh------hcccccccHHHHHHHHH
Confidence            7  58999999999999999999888888888888887666554 344556788986      89999999998888877


Q ss_pred             hhHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHH
Q 023815          174 VGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKN  252 (276)
Q Consensus       174 ~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~  252 (276)
                      .. ++.+|.+    +.|.   .+...++.....++|+.+.++.++++|+|+|+++|++|+|+++|++++.++...+...
T Consensus       152 ~~-~l~G~~a----v~g~---~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~  222 (291)
T PRK12874        152 LA-PIAGVVA----VLGE---IPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLL  222 (291)
T ss_pred             HH-HHHHHHH----HcCC---CcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHH
Confidence            44 4444543    3332   2322233334556788899999999999999999999999999999998876655543

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=100.00  E-value=6.9e-32  Score=244.12  Aligned_cols=218  Identities=19%  Similarity=0.199  Sum_probs=170.6

Q ss_pred             HHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccch--hhhhh--cCCCC
Q 023815           24 NLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDV--KIDKI--NKPDL   99 (276)
Q Consensus        24 ~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~--~~D~~--~~~~R   99 (276)
                      .+|.|++++||+++..+.++.+.|.++|... .++++..+.   .++++.++.+.++|.+|||+|+  +.|+.  ++|+|
T Consensus         2 ~~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~-~~~~~~~~l---l~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r   77 (293)
T PRK06080          2 TFKAWLELARPKTLPAAFAPVLVGTALAYWL-GSFHPLLAL---LALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLR   77 (293)
T ss_pred             CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHc-CCccHHHHH---HHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCcc
Confidence            3788999999999999999999999888432 344443221   2356778899999999999999  46753  56799


Q ss_pred             ccccCCCCHHHHHHHHHHHHHHHHHHHHH----hchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhh
Q 023815          100 PLASGDFSIKTGVAITLTCAMMSLAMGIM----IGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVG  175 (276)
Q Consensus       100 pl~~G~is~~~a~~~~~~~~~~g~~l~~~----~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~  175 (276)
                      |+++|++|+++++..+..+.+++++++..    .+.+.+. ..+++++.+++||.  ||.++|+++ +||+.++..+|..
T Consensus        78 ~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~-~~~~~~~~~~~Ys~--~p~~~~~~g-lge~~~~~~~G~~  153 (293)
T PRK06080         78 AIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLL-LGLLCIAAAILYTG--GPKPYGYTG-LGELFVGVFFGLV  153 (293)
T ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHhhhhcC--CCCccCCCC-cHHHHHHHHHHHH
Confidence            99999999999999988888777666543    3443333 33566678899999  999999998 5999999999976


Q ss_pred             HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhh
Q 023815          176 IQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL  255 (276)
Q Consensus       176 ~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~  255 (276)
                      ...+.++. +   .+   ..+...++...+.++++.+.++.||++|+|+|+++|+||+|+++|+|++++++..++.++++
T Consensus       154 ~~~~~~~~-~---~~---~~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~  226 (293)
T PRK06080        154 IVLGTYYL-Q---AG---TVDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYL  226 (293)
T ss_pred             HHHHHHHH-h---cC---CCCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHH
Confidence            66665542 1   12   23344455455667788889999999999999999999999999999999999999888887


Q ss_pred             h
Q 023815          256 E  256 (276)
Q Consensus       256 ~  256 (276)
                      .
T Consensus       227 ~  227 (293)
T PRK06080        227 C  227 (293)
T ss_pred             H
Confidence            4

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=100.00  E-value=6.5e-32  Score=243.06  Aligned_cols=214  Identities=15%  Similarity=0.163  Sum_probs=163.7

Q ss_pred             HHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhc--CCCCcc
Q 023815           24 NLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKIN--KPDLPL  101 (276)
Q Consensus        24 ~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~--~~~Rpl  101 (276)
                      ++|+|+|++||++...+......|+++|.++.+  ++...   +.+.++.+++++++|++|||+|+|+|++|  +|+||+
T Consensus         1 ~~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~~--~~~~~---~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl   75 (282)
T TIGR01475         1 KFKDILELIKFEHTVFALPFAYAGALLAAKGLP--GLKTL---ILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPL   75 (282)
T ss_pred             CHHHHHHHHccccHHHHHHHHHHHHHHhcCCCC--CHHHH---HHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCC
Confidence            368999999999998887777778888755433  33221   12356788899999999999999999998  579999


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhHHHHHH
Q 023815          102 ASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFF  181 (276)
Q Consensus       102 ~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~  181 (276)
                      ++|++++++++.+++++.+++++++..+|..+..++ ..+.+..+.|+.      +||++.+++++.|...+..+ +.+|
T Consensus        76 ~sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~-~~g~  147 (282)
T TIGR01475        76 VSGLISKKEARTMIILSLALFLSASYFLNPLAFILS-PLVLLVLIIYPY------TKRFTFLCHYVLGSTYGLAP-LAGW  147 (282)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhh------HhccccccHHHHHHHHHHHH-HHHH
Confidence            999999999999998888888888887887665443 344455788975      89999899999988877533 4445


Q ss_pred             HHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhh
Q 023815          182 IHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL  255 (276)
Q Consensus       182 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~  255 (276)
                      .+    +.|. .+.....++.....++|+.+.+++|+++|+|+|+++|+||+|+++|+|+++++...+..++++
T Consensus       148 ~a----~~g~-~~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~  216 (282)
T TIGR01475       148 VA----VIGT-ISFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFI  216 (282)
T ss_pred             HH----HhCC-ccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHH
Confidence            43    2232 111122233334566778889999999999999999999999999999999998887766665

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=9.2e-32  Score=242.68  Aligned_cols=215  Identities=15%  Similarity=0.122  Sum_probs=164.1

Q ss_pred             hhHHHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcC--CC
Q 023815           21 FLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINK--PD   98 (276)
Q Consensus        21 ~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~--~~   98 (276)
                      ..+++|+|+|++||++......+.+.|+++|.++.++  +..+   +.+.++.++.++++|++|||+|+|.|++|+  ++
T Consensus         4 ~~~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~~--~~~l---~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~   78 (291)
T PRK12886          4 LLTKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLPG--ASQL---DWILMAMVGARTAAMGFNRLIDAEIDARNPRTAG   78 (291)
T ss_pred             hHHHHHHHHHHhCccchHHHHHHHHHHHHHhccCCCC--HHHH---HHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCC
Confidence            4567999999999999988888888899888544332  2211   123567788899999999999999999997  58


Q ss_pred             CccccCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhHHH
Q 023815           99 LPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQF  178 (276)
Q Consensus        99 Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l  178 (276)
                      ||+++|++|++|+..+...+.+.++.+++..|+.+..++. .+.+..+.|+.      +||++.+++++.|...+. +++
T Consensus        79 RPL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~-~~~~~~~~Y~~------~Kr~t~~~~~~~g~~~~~-~~l  150 (291)
T PRK12886         79 RAIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSP-PALFFLLLYSY------CKRFTALAHVVLGFCLAL-APL  150 (291)
T ss_pred             CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh------hhccccccHHHHHHHHHH-HHH
Confidence            9999999999999998766666666666677876665543 44556788986      899998999888887664 455


Q ss_pred             HHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhh
Q 023815          179 SFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL  255 (276)
Q Consensus       179 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~  255 (276)
                      ++|.+    ..|.   .+...++.....++|+.+.++.++++|+|+|+++|+||+|+++|+++++++...+..+.++
T Consensus       151 ~g~~a----~~g~---~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~  220 (291)
T PRK12886        151 GAWIA----IRGT---IELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIG  220 (291)
T ss_pred             HHHHH----HcCC---CcHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHH
Confidence            66654    2232   2333344334556778888899999999999999999999999999999988776655555

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=1.7e-31  Score=240.62  Aligned_cols=217  Identities=17%  Similarity=0.217  Sum_probs=167.0

Q ss_pred             hhHHHHHHHHhhccchhHH---HHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcC-
Q 023815           21 FLKNLKSLYRFTRPNTLNG---LVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINK-   96 (276)
Q Consensus        21 ~~~~l~~~~~l~Rp~~~~~---~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~-   96 (276)
                      .++++++|+|++||++...   +.++.+.|.++|..+. ..++...   +.+.++.+++++++|++|||+|+|.|++|+ 
T Consensus         3 ~~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~-~~~~~~~---ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~R   78 (285)
T PRK12847          3 ILMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSL-LPDISLL---VLFIIGSVLMRSAGCIINDIFDRKIDKHVAR   78 (285)
T ss_pred             hHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCcc-CCcHHHH---HHHHHHHHHHHHHHHHHHhHHHhhhccCCCc
Confidence            4567999999999997654   4567778888875432 2333221   223567788999999999999999999765 


Q ss_pred             -CCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhh
Q 023815           97 -PDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVG  175 (276)
Q Consensus        97 -~~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~  175 (276)
                       ++||+++|+++++|++.++..+.++++.+++.+|+..+.++ +++.+..+.||.      .||++.+++++.|..++. 
T Consensus        79 t~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~-  150 (285)
T PRK12847         79 TKNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLS-FIAVILIVLYPL------MKRFFYWPQLFLGFTFNM-  150 (285)
T ss_pred             ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHhccc------cccCCcccHHHHHHHHHH-
Confidence             48999999999999999999999999988888887666544 455666888986      888888899888887774 


Q ss_pred             HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhh
Q 023815          176 IQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL  255 (276)
Q Consensus       176 ~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~  255 (276)
                      .++++|.+    ..|   ..+...++.....++|+.+.++.++++|+|+|+++|+||+|+++|+|++.++.....+..++
T Consensus       151 ~~l~~~~a----~~g---~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~  223 (285)
T PRK12847        151 GILMAFAA----VQN---QLDIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLIL  223 (285)
T ss_pred             HHHHHHHH----HcC---CCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHH
Confidence            34444543    223   23333444444566788899999999999999999999999999999999998888777666


Q ss_pred             h
Q 023815          256 E  256 (276)
Q Consensus       256 ~  256 (276)
                      .
T Consensus       224 ~  224 (285)
T PRK12847        224 W  224 (285)
T ss_pred             H
Confidence            3

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=100.00  E-value=1e-31  Score=241.36  Aligned_cols=214  Identities=15%  Similarity=0.190  Sum_probs=163.9

Q ss_pred             HHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcC--CCCcc
Q 023815           24 NLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINK--PDLPL  101 (276)
Q Consensus        24 ~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~--~~Rpl  101 (276)
                      ++|+|+|++||++.....++.+.|+++|.++  ..++..+.   ...++..+.++++|++|||+|+|.|++|+  |+||+
T Consensus         1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~--~~~~~~~~---l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl   75 (279)
T PRK12869          1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKH--GVSWLPLI---PLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPT   75 (279)
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHhccC--CCCHHHHH---HHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCc
Confidence            3689999999999888899999999888433  22332211   12456777899999999999999999987  69999


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhHHHHH
Q 023815          102 ASGDFSIKTGVAITLTCAMMSLAMGIM-IGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSF  180 (276)
Q Consensus       102 ~~G~is~~~a~~~~~~~~~~g~~l~~~-~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~  180 (276)
                      ++|++|++|+..++..+.++|+.+++. +|+.......+...+..+.||.     ++||+++ .+..++...|..+++++
T Consensus        76 ~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~-----~lKr~~~-~~~~v~~~~g~~~~l~g  149 (279)
T PRK12869         76 PVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTI-----WLKPRTW-LNIVIGGFAGNAAALAG  149 (279)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-----ccccCCh-HHHHHHHHHHHHHHHHH
Confidence            999999999999999999999988877 7765433333344456788987     8999997 57788888887777887


Q ss_pred             HHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhh
Q 023815          181 FIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL  255 (276)
Q Consensus       181 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~  255 (276)
                      |++    ..|   ..+...++.....++|+.+....++++|+|+|+++|+||+|+++|+|++.+....+..+..+
T Consensus       150 ~~a----~~g---~~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~  217 (279)
T PRK12869        150 YAS----GTG---SLDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIP  217 (279)
T ss_pred             HHH----HhC---CCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHH
Confidence            764    223   23333344334555677676666788999999999999999999999999887777665444

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.5e-31  Score=239.90  Aligned_cols=214  Identities=12%  Similarity=0.086  Sum_probs=163.5

Q ss_pred             HHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcC--CCCcc
Q 023815           24 NLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINK--PDLPL  101 (276)
Q Consensus        24 ~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~--~~Rpl  101 (276)
                      ++|+|+|++||++...++...+.|+++|.++..  ++..+.   ...++.+++++++|++||+.|+|.|++|+  ++||+
T Consensus         2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~~~--~~~~l~---l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPL   76 (286)
T PRK12895          2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGHYI--HPIKIL---LILIAAVSARTSAMSINRIEGLRYDMINPRKKDWAL   76 (286)
T ss_pred             cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCC--CHHHHH---HHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCC
Confidence            478999999999988888888889988854322  222111   12356778899999999999999999995  59999


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhHHHHHH
Q 023815          102 ASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFF  181 (276)
Q Consensus       102 ~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~  181 (276)
                      |+|++|++||+.+.+.+.++++.+++.+|+.++.++. ....+...|+      .+||+++++++++|...|. .++.+|
T Consensus        77 psG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~~-~~~~l~~~yp------~~KR~t~~~~~~lG~~~g~-~~l~g~  148 (286)
T PRK12895         77 VSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILSP-IVIFLFIIDP------FLKRYTAWRHIYMGSIIGL-GVLAGY  148 (286)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHH------HHHhCccccHHHHHHHHHh-HHHHHH
Confidence            9999999999999999999999988888987765443 3333444454      4999999999999999984 555666


Q ss_pred             HHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhh
Q 023815          182 IHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL  255 (276)
Q Consensus       182 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~  255 (276)
                      .+    +.|. ..+....++.....++|+.+.+++++++|+|+|++.|+||+|+++|++++.+++..++.++.+
T Consensus       149 ~A----v~g~-~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~  217 (286)
T PRK12895        149 LA----VIPA-FPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLI  217 (286)
T ss_pred             HH----HcCC-CCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHH
Confidence            54    2232 112222233334566788999999999999999999999999999999999887666555444

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.98  E-value=5.6e-31  Score=238.21  Aligned_cols=222  Identities=14%  Similarity=0.068  Sum_probs=173.8

Q ss_pred             hhhHHHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchh--hhhhcCC
Q 023815           20 GFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVK--IDKINKP   97 (276)
Q Consensus        20 ~~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~--~D~~~~~   97 (276)
                      ...++++.|++.+||+++..++++++.|.++|.....++++...+   .++++.++.|.++|.+|||+|++  .|+. ++
T Consensus         7 ~~~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~~~l---l~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~   82 (304)
T PRK07419          7 MSPSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLDQFI---TFLLAAILILAWENLSNDVFDADTGIDKN-KF   82 (304)
T ss_pred             CCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHHHHH---HHHHHHHHHHHHHHHHHHHHHHhccCCcc-cc
Confidence            345678999999999999999999999999986543466665432   23578889999999999999997  6774 22


Q ss_pred             CCccccCCCCHHHHHHHHHHHHHHHHHHHH----HhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHh
Q 023815           98 DLPLASGDFSIKTGVAITLTCAMMSLAMGI----MIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYG  173 (276)
Q Consensus        98 ~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~----~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g  173 (276)
                       +...++..+++++...+..+.+++++++.    ..|+ ..+...+++++.+++||.  ||+++|+++ +||+.++..+|
T Consensus        83 -~~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g~-~~l~ig~~g~~~~~~YT~--gP~~l~y~g-LGE~~v~l~~G  157 (304)
T PRK07419         83 -HSVVNLTGNKSLVFWLANLFLLLGLLGILAIALQSDW-TVLGLVLLCCFLGYLYQG--PPFRLGYQG-LGEPLCFLAFG  157 (304)
T ss_pred             -cCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcH-HHHHHHHHHHHHhheccC--CCcccCCCC-chHHHHHHHHH
Confidence             23344555789998888887777665543    3344 444445678889999999  999999999 59999999999


Q ss_pred             hhHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHh
Q 023815          174 VGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNM  253 (276)
Q Consensus       174 ~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~  253 (276)
                      .++..+.++. ++   +   .+++..+.......+.+.++.+.||+||+|+|+++|+||+|+++|+|++++++..+...+
T Consensus       158 ~l~v~g~~yv-~t---~---~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~a  230 (304)
T PRK07419        158 PLAVAAALYS-QT---P---SWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLI  230 (304)
T ss_pred             HHHHHHHHHH-hc---C---CCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHH
Confidence            8888887764 22   2   344444555556667778889999999999999999999999999999999999998888


Q ss_pred             hhhh
Q 023815          254 DLED  257 (276)
Q Consensus       254 ~~~~  257 (276)
                      |+..
T Consensus       231 y~~~  234 (304)
T PRK07419        231 YALE  234 (304)
T ss_pred             HHHH
Confidence            8743

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.98  E-value=9.4e-31  Score=238.26  Aligned_cols=218  Identities=18%  Similarity=0.157  Sum_probs=165.5

Q ss_pred             hhhHHHHHHHHhh---ccchhHHHHHHHHHhhhhccccC---CCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhh
Q 023815           20 GFLKNLKSLYRFT---RPNTLNGLVIAVTSICCLPLQNL---GDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDK   93 (276)
Q Consensus        20 ~~~~~l~~~~~l~---Rp~~~~~~~~~~~~g~~la~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~   93 (276)
                      ..++++++|+|++   ||+......++.+.|+++|....   ...++..   .+.+.++.++.++++|++|||+|+|.|+
T Consensus        25 ~~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~~---~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~  101 (314)
T PRK12878         25 RLPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLWH---LFLFFVGAIAMRGAGCTYNDIVDRDIDA  101 (314)
T ss_pred             hcchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            3567899999999   89898999999999999985421   1333322   1223578888999999999999999998


Q ss_pred             hcC--CCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHH
Q 023815           94 INK--PDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIG  171 (276)
Q Consensus        94 ~~~--~~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~  171 (276)
                      +++  ++||+++|++|++|+..+..++.++|+.+.+..|++.+.++ +.+++..+.|+.      +||+..+++...|..
T Consensus       102 ~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~~Gl~  174 (314)
T PRK12878        102 KVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALG-IASLAIVAAYPF------MKRITWWPQFFLGLA  174 (314)
T ss_pred             CCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH------HHhcCCcchHHHHHH
Confidence            766  48999999999999999999999999988877776665544 456667889976      899888888777776


Q ss_pred             HhhhHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHH
Q 023815          172 YGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFK  251 (276)
Q Consensus       172 ~g~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~  251 (276)
                      .+. .++.+|++    ..|.   +++..++.....++|+...+.+++++|+|+|+++|+||+|+++|+++++++.....+
T Consensus       175 ~~~-~~l~g~~a----~~g~---~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~  246 (314)
T PRK12878        175 FSW-GALMGWAA----HFGS---LSLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFYGL  246 (314)
T ss_pred             HHH-HHHHHHHH----HhCC---CchHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHHHHH
Confidence            553 33344543    2232   333333333345567888899999999999999999999999999999988866555


Q ss_pred             Hhhh
Q 023815          252 NMDL  255 (276)
Q Consensus       252 ~~~~  255 (276)
                      ...+
T Consensus       247 ~~~~  250 (314)
T PRK12878        247 AVLL  250 (314)
T ss_pred             HHHH
Confidence            4433

>PLN02922 prenyltransferase

Probab=99.98  E-value=1.4e-30  Score=236.76  Aligned_cols=227  Identities=15%  Similarity=0.159  Sum_probs=170.3

Q ss_pred             hhHHHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchh--hhhhcCCC
Q 023815           21 FLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVK--IDKINKPD   98 (276)
Q Consensus        21 ~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~--~D~~~~~~   98 (276)
                      ..+++|.|++.+||+++..++++++.|.++|.....++++...+   .++++.++.|.++|.+|||+|++  .|+.++..
T Consensus        11 ~~~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~~~l---l~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~   87 (315)
T PLN02922         11 ELSRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDARRYG---TLLLSSVLVITWLNLSNDAYDADTGVDKNKKES   87 (315)
T ss_pred             CccHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHHHHH---HHHHHHHHHHHHHHHHhhhhHhccCcCcccCCC
Confidence            34568889999999999999999999999986544466665432   24678889999999999999986  57643322


Q ss_pred             CccccCCCCHHHHHHHHHHHHHHHHHHHHHh----chhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhh
Q 023815           99 LPLASGDFSIKTGVAITLTCAMMSLAMGIMI----GSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGV  174 (276)
Q Consensus        99 Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~----~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~  174 (276)
                      +.-..|  ++++++..++.+.++++...+.+    +.+.+++.++++++.+++||.  ||+++||++ +||+.++..+|.
T Consensus        88 ~~~~~~--s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG~~g~~~~~~Yt~--gP~pl~y~g-LGE~~v~i~fG~  162 (315)
T PLN02922         88 VVNLVG--SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLLAAAILCGYVYQC--PPFRLSYKG-LGEPLCFAAFGP  162 (315)
T ss_pred             CCCccc--CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHhc--CCcccccCc-chHHHHHHHHHH
Confidence            122234  89999888887777666322221    334454555678889999999  999999999 599999999998


Q ss_pred             hHHHHHHHHHHHHhhcc-cc---cchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHH
Q 023815          175 GIQFSFFIHIQKYVLGR-SV---VITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLF  250 (276)
Q Consensus       175 ~~~l~~~~~~~~~~~g~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~  250 (276)
                      ++..+.|+. ++...+. ..   .+++..++..+...+++.++.+.||+||+|+|+++|+||+|+++|+|+++++...++
T Consensus       163 l~v~g~y~~-~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~  241 (315)
T PLN02922        163 LATTAFYLA-LASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAV  241 (315)
T ss_pred             HHHHHHHHH-hcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHH
Confidence            777776654 2211111 00   123444555567777888899999999999999999999999999999999999988


Q ss_pred             HHhhhh
Q 023815          251 KNMDLE  256 (276)
Q Consensus       251 ~~~~~~  256 (276)
                      ..+|+.
T Consensus       242 ~~~y~~  247 (315)
T PLN02922        242 LLLYSL  247 (315)
T ss_pred             HHHHHH
Confidence            888763

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.98  E-value=3.6e-31  Score=238.79  Aligned_cols=212  Identities=16%  Similarity=0.165  Sum_probs=161.9

Q ss_pred             hhHHHHHHHHhhccchhHHHH---HHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcCC
Q 023815           21 FLKNLKSLYRFTRPNTLNGLV---IAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKP   97 (276)
Q Consensus        21 ~~~~l~~~~~l~Rp~~~~~~~---~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~~   97 (276)
                      .+.++++|+|++||++.....   ++.+.|..+|.++.+  ++..+   +.+.++.+++++++|++||++|+|.|++++|
T Consensus         5 ~~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~~--~~~~~---~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~R   79 (290)
T PRK12870          5 LEPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGLP--PLPLV---GIIILGALATSAAGCVVNDLWDRDIDPQVER   79 (290)
T ss_pred             cchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCC--CHHHH---HHHHHHHHHHHHHHHHHHhHHHhccCCCCCc
Confidence            346789999999999865554   577778888754422  33222   1234677788999999999999999987543


Q ss_pred             --CCccccCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhh
Q 023815           98 --DLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVG  175 (276)
Q Consensus        98 --~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~  175 (276)
                        +||+++|++|++|+..++..+.++++.+++.+|+.++.++ ..+.+..++|+.      .||++.+++++.|...+. 
T Consensus        80 t~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~-  151 (290)
T PRK12870         80 TRFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLC-VAAVPVIFLYPL------AKRVFPVPQLVLAIAWGF-  151 (290)
T ss_pred             ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHhhh------hhhccccceeeehHHHHh-
Confidence              8999999999999999999999999999888887666554 345556788876      888888899988888874 


Q ss_pred             HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHH
Q 023815          176 IQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKN  252 (276)
Q Consensus       176 ~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~  252 (276)
                      .++++|.+    ..|   ..++..++.....++|+.+.++.++++|+|+|+++|+||+|+++|++++.+++....+.
T Consensus       152 ~~l~g~~a----~~g---~~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~~~~~  221 (290)
T PRK12870        152 AVLISWSA----VTG---HLDLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGLFFALT  221 (290)
T ss_pred             HHHHHHHH----HcC---CCCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHHHHHHH
Confidence            44555543    223   23333344444566788999999999999999999999999999999998877743333

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=99.97  E-value=4.5e-31  Score=239.03  Aligned_cols=216  Identities=17%  Similarity=0.147  Sum_probs=163.8

Q ss_pred             hHHHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcC--CCC
Q 023815           22 LKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINK--PDL   99 (276)
Q Consensus        22 ~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~--~~R   99 (276)
                      +.++|+|+|++||+++..+.++...|+++|.++  ..++..+   +.+.++.++.++++|++|||+|+|.|++|+  |+|
T Consensus         7 ~~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~--~~~~~~~---~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~R   81 (296)
T PRK04375          7 RATLKDYLALTKPRVISLNLFTALGGMLLAPPG--VPPLLLL---LLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNR   81 (296)
T ss_pred             hhhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCC--CCCHHHH---HHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCC
Confidence            356999999999999999999999999998543  2333222   123567788999999999999999999987  699


Q ss_pred             ccccCCCCHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhHHH
Q 023815          100 PLASGDFSIKTGVAITLTCAMMSLAMGIM-IGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQF  178 (276)
Q Consensus       100 pl~~G~is~~~a~~~~~~~~~~g~~l~~~-~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l  178 (276)
                      |+++|++|++|++.++..+.++|+++++. .+.....+..+..+...+.||.     ++||+++ ++..++...|..+++
T Consensus        82 pl~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~-----~lKr~~~-~~~~v~~~~g~~~~l  155 (296)
T PRK04375         82 PLVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTL-----WLKRRTP-QNIVIGGAAGAMPPL  155 (296)
T ss_pred             CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc-----chhcCCc-cchHHHHHHHHhHHH
Confidence            99999999999999999999999988755 4654544332222234678987     8999995 677888777766666


Q ss_pred             HHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhh
Q 023815          179 SFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL  255 (276)
Q Consensus       179 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~  255 (276)
                      .+|.+    +.|   ..+...++.....++|+.+.+..++++|+|+|+++|+||+|+++|++++++.+....++..+
T Consensus       156 ~g~~a----~~g---~~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~  225 (296)
T PRK04375        156 IGWAA----VTG---SLSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLVA  225 (296)
T ss_pred             HHHHH----hCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHHH
Confidence            66653    223   23333344444566777777888889999999999999999999999998877766655443

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=99.97  E-value=2.2e-30  Score=232.69  Aligned_cols=209  Identities=16%  Similarity=0.105  Sum_probs=165.0

Q ss_pred             ccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhh--hhh--cCCCCccccCCCCH
Q 023815           33 RPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKI--DKI--NKPDLPLASGDFSI  108 (276)
Q Consensus        33 Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~--D~~--~~~~Rpl~~G~is~  108 (276)
                      ||+++..++.+++.|.++|.... .+++....   .+++++++.|.++|.+|||+|++.  |+.  .+|+|++++|.+++
T Consensus         1 Rp~tl~~s~~pv~lG~ala~~~~-~f~~~~~l---l~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~   76 (284)
T TIGR00751         1 RPKTLPLAIAPIVAGTALAAWLH-AFVWLVAL---LALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITP   76 (284)
T ss_pred             CCchHHHHHHHHHHHHHHHHHcC-CccHHHHH---HHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCH
Confidence            89999999999999999986542 66665322   235778899999999999999853  543  25789999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH----Hhch-----hHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhHHHH
Q 023815          109 KTGVAITLTCAMMSLAMGI----MIGS-----PPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFS  179 (276)
Q Consensus       109 ~~a~~~~~~~~~~g~~l~~----~~~~-----~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~  179 (276)
                      +++...++.+..++++++.    ..++     +.++...+++++.+++||.  ||+++|+++ +||+.++..+|.+++++
T Consensus        77 ~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~--gP~~l~y~g-LGE~~v~i~~G~l~v~g  153 (284)
T TIGR00751        77 REVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYTV--GSKPYGYAG-LGDISVLVFFGPLAVLG  153 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhcC--CCCccccCc-hHHHHHHHHHHHHHHHH
Confidence            9999998888776665543    3343     1333444677788999999  999999999 59999999999888888


Q ss_pred             HHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhh
Q 023815          180 FFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL  255 (276)
Q Consensus       180 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~  255 (276)
                      .++. ++   +   .+++..++......+++.++++.||+||+|+|+++|+||+|+++|+|+++++...++..+|+
T Consensus       154 ~~yv-q~---~---~~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~  222 (284)
T TIGR00751       154 TQYL-QA---H---RVDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGV  222 (284)
T ss_pred             HHHH-hc---C---CCCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHH
Confidence            7663 22   2   24444444445566677889999999999999999999999999999999999998888875

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=2e-30  Score=233.16  Aligned_cols=213  Identities=15%  Similarity=0.100  Sum_probs=158.7

Q ss_pred             HHHHHHhhccchhHHHHHHHHHhhhhccc-cCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcC--CCCcc
Q 023815           25 LKSLYRFTRPNTLNGLVIAVTSICCLPLQ-NLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINK--PDLPL  101 (276)
Q Consensus        25 l~~~~~l~Rp~~~~~~~~~~~~g~~la~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~--~~Rpl  101 (276)
                      +|+++|+.||++.+.+....+.|.+.+.. .....++..+   +...++.+++++++|++||++|+|.|++|+  ++||+
T Consensus         2 ~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~---~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL   78 (284)
T PRK12888          2 VRAFLRLVAIEHSVFALPFAYIAALTAMFASDGSVHWADL---LLVTVAMVGARTFAMAANRIIDREIDARNPRTAGREL   78 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCC
Confidence            68999999999977655544445544421 0112333322   123567788999999999999999999998  58999


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhHHHHHH
Q 023815          102 ASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFF  181 (276)
Q Consensus       102 ~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~  181 (276)
                      |+|++|++|++.+.+.+.++++.++..+|+.++.+. .++++..+.|+.      .||++.+++++.|...+. .++++|
T Consensus        79 ~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~t~~~~~~lg~~~~~-~~l~g~  150 (284)
T PRK12888         79 VTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALA-PLAVAPLVVYPY------AKRFTNFPHAILGLAQAV-GPVGAW  150 (284)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH------hhcccchhhHHHHHHHHH-HHHHHH
Confidence            999999999999998888888888877887665543 344455678875      899998999998888764 445556


Q ss_pred             HHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhh
Q 023815          182 IHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL  255 (276)
Q Consensus       182 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~  255 (276)
                      .+    +.|.   .++..++.....++|+.+.+++|+++|+|+|+++|+||+|+++|+|++.+++..+..++++
T Consensus       151 ~a----~~g~---~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~  217 (284)
T PRK12888        151 IA----VTGT---WSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFA  217 (284)
T ss_pred             HH----HcCC---CCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHH
Confidence            54    2232   3333344444566788899999999999999999999999999999999877766655544

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=99.97  E-value=3.9e-30  Score=232.28  Aligned_cols=213  Identities=22%  Similarity=0.313  Sum_probs=164.0

Q ss_pred             HHHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcCC--CCc
Q 023815           23 KNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKP--DLP  100 (276)
Q Consensus        23 ~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~~--~Rp  100 (276)
                      ..++.+++..||..+.....+.+.|..++..++++  ..   ..+.+.++.+++++++|++||++|+|+||+|+|  +||
T Consensus        11 ~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~~~~~--~~---~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RP   85 (289)
T COG0382          11 KALLKLLRLDRPIFNLLLLLPALLGLLLAASGLPS--LK---LLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRP   85 (289)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCch--HH---HHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCC
Confidence            44555566666666666666777777776533322  11   122235677788999999999999999999998  999


Q ss_pred             cccCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhHHHHH
Q 023815          101 LASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSF  180 (276)
Q Consensus       101 l~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~  180 (276)
                      +++|++|+++++.+.+++.++++.+++.+++..+.+. ..+.++.+.| .     ++||.++++++++|..++..+..|+
T Consensus        86 l~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~-~~~~~l~~~Y-~-----~~Kr~~~~~~~~lg~~~~~~~~~g~  158 (289)
T COG0382          86 LPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLS-LAALVLALAY-P-----FLKRFTFLPQLVLGLAFGLGALAGA  158 (289)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHH-H-----HhhcCCchHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998775543 5667788999 4     6999999999999999985554443


Q ss_pred             HHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhh
Q 023815          181 FIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL  255 (276)
Q Consensus       181 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~  255 (276)
                      ..     ..+   ..+...++......+|+.++++.++++|+|+|+++|++|+|+.+|++++.+++......+.+
T Consensus       159 ~a-----~~~---~~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~~~~~~  225 (289)
T COG0382         159 AA-----VGG---SLPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLLLASAL  225 (289)
T ss_pred             HH-----HhC---ccchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHHHHHHH
Confidence            22     222   12233344445666788999999999999999999999999999999999999998855444

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=99.97  E-value=3e-30  Score=232.19  Aligned_cols=213  Identities=20%  Similarity=0.220  Sum_probs=158.6

Q ss_pred             HHHHHHHHhhccchhHH---HHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcC--C
Q 023815           23 KNLKSLYRFTRPNTLNG---LVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINK--P   97 (276)
Q Consensus        23 ~~l~~~~~l~Rp~~~~~---~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~--~   97 (276)
                      +++|+|+|++|+++...   ..++.+.|..+|.++.++  +..+   +.++++.++.++++|++|||+|+|.|++++  +
T Consensus         3 ~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~~--~~~~---~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~   77 (282)
T PRK12848          3 NRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIPD--LWVL---VVFVLGVFLMRAAGCVINDYADRDFDGHVKRTK   77 (282)
T ss_pred             hhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCCC--HHHH---HHHHHHHHHHHHHHHHHHhhHHhccCCCCCCCC
Confidence            56899999999776543   445666788887543322  2221   123467778899999999999999999765  4


Q ss_pred             CCccccCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhHH
Q 023815           98 DLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQ  177 (276)
Q Consensus        98 ~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~  177 (276)
                      +||+++|++|++++..++..+..+++.+++.+++....++ ..+.+..+.|+.      .||++.+++++.|...|..+ 
T Consensus        78 ~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~g~~~-  149 (282)
T PRK12848         78 NRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLS-VAALALAWIYPF------MKRYTHLPQVVLGAAFGWGI-  149 (282)
T ss_pred             CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHh------HHhcCcccHHHHHHHHHHHH-
Confidence            8999999999999999999999999988888887666544 455566788965      78888889988888887543 


Q ss_pred             HHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhh
Q 023815          178 FSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL  255 (276)
Q Consensus       178 l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~  255 (276)
                      +.+|.+    ..+   ..+...++.....++|+.+.++.++++|+|+|+++|+||+|+++|+|++.+......+....
T Consensus       150 ~~g~~a----~~~---~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~  220 (282)
T PRK12848        150 PMAFAA----VQG---SVPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLLQLATLAL  220 (282)
T ss_pred             HHHHHH----HhC---CCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHHHHHHHHHH
Confidence            334443    223   23333344434566778888999999999999999999999999999998887655544444

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=99.97  E-value=2.1e-30  Score=233.00  Aligned_cols=212  Identities=20%  Similarity=0.204  Sum_probs=157.6

Q ss_pred             HHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcC--CCCcccc
Q 023815           26 KSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINK--PDLPLAS  103 (276)
Q Consensus        26 ~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~--~~Rpl~~  103 (276)
                      |+|+|++||+++..+.++...|+++|.+.. +.++..+   +.+.++.++.++++|++|||+|+|.|++|+  |+||+++
T Consensus         1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~-~~~~~~~---~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~s   76 (280)
T TIGR01473         1 KDYLQLTKPRIISLLLITAFAGMWLAPGGA-LVNPPLL---LLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVT   76 (280)
T ss_pred             CchHHHccHHHHHHHHHHHHHHHHHhCCCC-CCCHHHH---HHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCC
Confidence            478999999999999999999999985432 2333322   123567788999999999999999999976  6999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHH-HHhchhHHHHHHHHHHH-HHHHhcCCCCccccccchhhhHHHHHHHHhhhHHHHHH
Q 023815          104 GDFSIKTGVAITLTCAMMSLAMG-IMIGSPPLAWGLILWFI-LVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFF  181 (276)
Q Consensus       104 G~is~~~a~~~~~~~~~~g~~l~-~~~~~~~~~~~~~~~~~-~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~  181 (276)
                      |++|++++..+++.+.++|+.+. ...|+....++ ..+.+ ..++||.     ++||++++ +..++...|..+++++|
T Consensus        77 G~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~-~~~~~~~~~~Yt~-----~lKr~~~~-~~~v~~~~g~~~~l~g~  149 (280)
T TIGR01473        77 GRISPREALAFGLLLGVLGVAILAAFVNPLAALLG-LFGIFFYVIVYTI-----WLKRRTPQ-NTVIGGFAGAVPPLIGW  149 (280)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHhhcCh-----hhccCCch-hHHHHHHHHHHHHHHHH
Confidence            99999999999999999998854 44776555443 34443 3788996     68999975 55667777777777777


Q ss_pred             HHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhh
Q 023815          182 IHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL  255 (276)
Q Consensus       182 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~  255 (276)
                      ++    ..|   ..+...++.....++|+.......+.+|+|+|+++|+||+|+++|+|++.+......+....
T Consensus       150 ~a----~~g---~~~~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~  216 (280)
T TIGR01473       150 AA----VTG---SISLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLP  216 (280)
T ss_pred             HH----hcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHH
Confidence            64    223   22333333333455566555555668999999999999999999999998877766555444

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=99.97  E-value=6e-30  Score=232.09  Aligned_cols=217  Identities=16%  Similarity=0.215  Sum_probs=160.5

Q ss_pred             hhHHHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcC--CC
Q 023815           21 FLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINK--PD   98 (276)
Q Consensus        21 ~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~--~~   98 (276)
                      .+.++|+|++++||+++..+.++.+.|+++|..+  +.++...   +.+.++..+.++++|++|||+|+|.|++++  ++
T Consensus         9 ~~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~~--~~~~~~~---~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~   83 (306)
T PRK13362          9 WEASLKDYIQVTKPGIIFGNVISVAGGFFLASKG--HVDPVLM---LAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRN   83 (306)
T ss_pred             HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC--CCCHHHH---HHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCC
Confidence            4466899999999999999999999999888433  3333321   123456778888999999999999999765  48


Q ss_pred             CccccCCCCHHHHHHHHHHHHHHHHHHHH-HhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhHH
Q 023815           99 LPLASGDFSIKTGVAITLTCAMMSLAMGI-MIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQ  177 (276)
Q Consensus        99 Rpl~~G~is~~~a~~~~~~~~~~g~~l~~-~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~  177 (276)
                      ||+++|++++++|+.+++.+..+|+.++. ..|.....+..+..+...+.||.     ++||++++++++.+ ..|.+++
T Consensus        84 RPlpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~-----~lKr~t~~~~~vgg-~~ga~p~  157 (306)
T PRK13362         84 RVTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSL-----YLKRNSVYGTLVGS-LSGAMPP  157 (306)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH-----HHhccCcHhHHHHH-HHHHHHH
Confidence            99999999999999999999999988654 45655443332222335678986     79999987776544 4455566


Q ss_pred             HHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhh
Q 023815          178 FSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL  255 (276)
Q Consensus       178 l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~  255 (276)
                      +.+|.+    +.|   ..+...++.....++|+.+.....+++|+|+|+++|+||+|+++|+|++.+.......+...
T Consensus       158 l~G~~a----~~g---~~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~~~~~~~~~  228 (306)
T PRK13362        158 VVGYCA----VTG---QFDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHIVLYILVFAL  228 (306)
T ss_pred             HHHHHH----HcC---CCcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHHHHHHHHHHH
Confidence            666654    223   23333444445666788888888889999999999999999999999999866665554333

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=99.97  E-value=1.7e-29  Score=227.06  Aligned_cols=213  Identities=13%  Similarity=0.035  Sum_probs=164.6

Q ss_pred             HHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhh--hhhcCCCCccccCC
Q 023815           28 LYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKI--DKINKPDLPLASGD  105 (276)
Q Consensus        28 ~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~--D~~~~~~Rpl~~G~  105 (276)
                      |++.+||+++..++++++.|.++|.....++++....   .++++.++.|.++|.+|||+|++.  |+.+.  ....++.
T Consensus         2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~~~l---l~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~--~~~~~~~   76 (285)
T TIGR02235         2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLDRFA---LFLIAAILILAWINLTNDVFDSDTGIDRFKL--HSIVNLT   76 (285)
T ss_pred             hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHHHHH---HHHHHHHHHHHHHHHHHhHHHHhcCCCcccc--CCccccc
Confidence            6789999999999999999999986544466665432   235788899999999999999874  76422  1222233


Q ss_pred             CCHHHHHHHHHHHHHHHHHHH----HHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhHHHHHH
Q 023815          106 FSIKTGVAITLTCAMMSLAMG----IMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFF  181 (276)
Q Consensus       106 is~~~a~~~~~~~~~~g~~l~----~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~  181 (276)
                      .+++++...+..+..++++++    +..+ +..+....++++.+++||.  ||+++|+++ +||+.++..+|.+++.+.+
T Consensus        77 ~~~~~v~~~~~~~~~ia~~~g~~L~~~~~-~~~l~lg~~g~~~~~~Yt~--gP~~l~y~g-LGE~~v~l~~G~l~v~g~~  152 (285)
T TIGR02235        77 GSRSLVFWLANFFLLIGLVGIAALSWRWQ-ITVLALVGLCCFLGYLYQG--PPFRLGYQG-LGEPICWLCFGPLAIAAAL  152 (285)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhhcC--CCcccCCCC-ccHHHHHHHHHHHHHHHHH
Confidence            457888877777776665544    3334 4444445678889999999  999999999 5999999999988877776


Q ss_pred             HHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhhh
Q 023815          182 IHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDLE  256 (276)
Q Consensus       182 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~~  256 (276)
                      +. ++   +   .+++..+......++.+.++.+.||+||+|+|+++|+||+++++|+|++.++...++..+|+.
T Consensus       153 yv-qt---~---~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~  220 (285)
T TIGR02235       153 YA-QS---Q---SFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVV  220 (285)
T ss_pred             HH-hC---C---cCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHH
Confidence            63 22   2   345555555566777788899999999999999999999999999999999999998888874

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=99.97  E-value=1.2e-29  Score=225.44  Aligned_cols=220  Identities=16%  Similarity=0.139  Sum_probs=172.2

Q ss_pred             HHHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchh--hhhh----cC
Q 023815           23 KNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVK--IDKI----NK   96 (276)
Q Consensus        23 ~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~--~D~~----~~   96 (276)
                      ++.+.|+++.||+++..++++++.|.++|......++++..   +.+++++++.+..+|..|||.|++  .|..    .+
T Consensus         6 ~~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~~~~---ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~   82 (303)
T COG1575           6 SKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNLLVA---LLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLK   82 (303)
T ss_pred             HHHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHHHHH---HHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccc
Confidence            34689999999999999999999999999765445555432   234678889999999999999985  4542    22


Q ss_pred             CCCccccCCCCHHHHHHHHHHHHHHHHHHH----HHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHH
Q 023815           97 PDLPLASGDFSIKTGVAITLTCAMMSLAMG----IMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGY  172 (276)
Q Consensus        97 ~~Rpl~~G~is~~~a~~~~~~~~~~g~~l~----~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~  172 (276)
                      .++.+...+++++..+...+.+...+.+++    ...++ .++..++++++.+++||.  +|++++|.| +||+.++.++
T Consensus        83 ~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~-~~l~lG~l~~~~g~~YTg--Gp~PlgY~g-LGEi~~~vff  158 (303)
T COG1575          83 QSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDW-LVLLLGLLCIAAGILYTG--GPFPLGYMG-LGEIFVGVFF  158 (303)
T ss_pred             ccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHheeeecc--CCcCcccCC-HHHHHHHHHH
Confidence            345566677788888777776665555444    33344 445556788889999999  999999999 5999999999


Q ss_pred             hhhHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHH
Q 023815          173 GVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKN  252 (276)
Q Consensus       173 g~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~  252 (276)
                      |.+...+.|+. |+   +   .+++..++..+...+.+.+++..||+||+|+|+++|++|+||++|+++++++...++..
T Consensus       159 G~l~v~g~~yi-qt---~---~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~  231 (303)
T COG1575         159 GPLIVLGAYYI-QT---G---RLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVV  231 (303)
T ss_pred             HHHHHHHHHHH-hc---c---cchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHH
Confidence            98777777663 22   2   34555566666777777888999999999999999999999999999999999999988


Q ss_pred             hhhh
Q 023815          253 MDLE  256 (276)
Q Consensus       253 ~~~~  256 (276)
                      +|+.
T Consensus       232 a~l~  235 (303)
T COG1575         232 AYLA  235 (303)
T ss_pred             HHHH
Confidence            8874

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=99.97  E-value=2e-29  Score=226.65  Aligned_cols=210  Identities=17%  Similarity=0.160  Sum_probs=152.2

Q ss_pred             HHHHHhhccch---hHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcC--CCCc
Q 023815           26 KSLYRFTRPNT---LNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINK--PDLP  100 (276)
Q Consensus        26 ~~~~~l~Rp~~---~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~--~~Rp  100 (276)
                      +.|.|++|++.   +....++.+.|+.+|.......++..+   +.+.++.++.++++|++|||+|+|.|++|+  |+||
T Consensus         2 ~~y~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~~~~~~---~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RP   78 (281)
T TIGR01474         2 LPYAKLMRADKPIGTLLLLWPCLWSLLLAAQAGGIPPLYLL---GLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRP   78 (281)
T ss_pred             hHHHHHHccccHHHHHHHHHHHHHHHHHHhcccCCCcHHHH---HHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCC
Confidence            44566655554   455566777788887431111122221   123466778899999999999999999765  4899


Q ss_pred             cccCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhHHHHH
Q 023815          101 LASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSF  180 (276)
Q Consensus       101 l~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~  180 (276)
                      +++|+++++|++.++.++.++|+.+++..|+....++ +.+++..+.||.      +||++.+++++.|...+..+ +.+
T Consensus        79 l~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~-~~g  150 (281)
T TIGR01474        79 LASGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLG-VASLALVATYPF------MKRITYWPQLVLGLAFGWGA-LMG  150 (281)
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHhch------hcccccccHHHHHHHHHHHH-HHH
Confidence            9999999999999999999999999888887666544 456667899986      89998899988887776433 334


Q ss_pred             HHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHh
Q 023815          181 FIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNM  253 (276)
Q Consensus       181 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~  253 (276)
                      |.+    +.|   +.++..++.....++|+.+.+..++++|+|+|+++|+||+|+++|+|++++......+..
T Consensus       151 ~~a----~~g---~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~  216 (281)
T TIGR01474       151 WAA----VTG---DLSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGGLYALMI  216 (281)
T ss_pred             HHH----HcC---CCcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHHHHHHHH
Confidence            443    233   233333333345566788999999999999999999999999999998766655544433

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=5.3e-29  Score=222.84  Aligned_cols=216  Identities=20%  Similarity=0.227  Sum_probs=149.4

Q ss_pred             HHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcCCCCccccC
Q 023815           25 LKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKPDLPLASG  104 (276)
Q Consensus        25 l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~~~Rpl~~G  104 (276)
                      +|.+++++||++|+.+.+++..|+++| ++.++  +.+++..   +......+.+.|++|||+|+|.|+.|++++. +.|
T Consensus         1 ~~~~~~~~rP~~wi~~a~pf~~g~~la-~~~~~--~~~l~~~---l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g-~~g   73 (282)
T PRK13105          1 IRQLLLSSRPISWINTAYPFAAAYLLA-GGEID--WLFVVGT---VFFLIPYNLAMYGINDVFDYESDLRNPRKGG-VEG   73 (282)
T ss_pred             ChhHHHhcccHHHhccHHHHHHHHHHH-CCCCC--hHHHHHH---HHHHHHHHHHHHhhhhhhhhhcCCCCcccCC-CCC
Confidence            478899999999999999999999998 44332  3222221   1112223333346699999999999876433 358


Q ss_pred             CCCHHHHHHHHHHHHHHHHH----HHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhHHHHH
Q 023815          105 DFSIKTGVAITLTCAMMSLA----MGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSF  180 (276)
Q Consensus       105 ~is~~~a~~~~~~~~~~g~~----l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~  180 (276)
                      .++++|.....+.+..++..    .....+.+..+....++++.++.||.  ||.|+|++++.++++.++.+.....+|.
T Consensus        74 ~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~~~ai~~~~~YS~--~p~rlk~~gl~d~~t~~~~f~~~~v~G~  151 (282)
T PRK13105         74 AVLDRAMHRTTLWASVVTTVPFLVVLLAVGSWASGLVLAVSVFAVVAYSA--PGLRFKERPFLDSLTSSTHFVSPALYGL  151 (282)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcC--CCccccccchHHHHHHHHHHHHHHHHHH
Confidence            89999885554443333222    12233233333344577788999999  9999999998777655544432233343


Q ss_pred             HHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhhhh
Q 023815          181 FIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDLED  257 (276)
Q Consensus       181 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~~~  257 (276)
                      ++     + +.  ..++..++....+++++.+++++||+||+|+||++|+||+|+++|+|++.+++..++.++++..
T Consensus       152 ~~-----~-~~--~~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~  220 (282)
T PRK13105        152 VL-----A-GA--PFTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLM  220 (282)
T ss_pred             HH-----h-hc--cccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHH
Confidence            32     2 32  2333345555566778899999999999999999999999999999999999999999888754

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=99.96  E-value=2e-28  Score=220.54  Aligned_cols=208  Identities=17%  Similarity=0.162  Sum_probs=152.5

Q ss_pred             hHHHHHHHHhhccchhHHHH---HHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcC--
Q 023815           22 LKNLKSLYRFTRPNTLNGLV---IAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINK--   96 (276)
Q Consensus        22 ~~~l~~~~~l~Rp~~~~~~~---~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~--   96 (276)
                      ++++++|+|++|.++.....   ++...|..++.......++..+   +.+.++.+++++++|++||++|+|+|++|+  
T Consensus         3 ~~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~~~l---~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT   79 (289)
T PLN02809          3 PPSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPDLKML---ALFGCGALLLRGAGCTINDLLDRDIDKKVERT   79 (289)
T ss_pred             chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCcHHHH---HHHHHHHHHHHHHHHHHHhhHHhccccCCCCC
Confidence            36789999999998755443   4555566555321111222221   123567788999999999999999999875  


Q ss_pred             CCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhH
Q 023815           97 PDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGI  176 (276)
Q Consensus        97 ~~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~  176 (276)
                      |+||+++|++|++|++.+..++.++++.+++.+|+..+.++ .++.+..+.|+.      +||++.+++++.|...+. .
T Consensus        80 ~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~-~  151 (289)
T PLN02809         80 KLRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILG-ASSLLLVFTYPL------MKRFTFWPQAFLGLTFNW-G  151 (289)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhH------HHhcCcchHHHHHHHHHH-H
Confidence            59999999999999999999999999999888887666554 455566788976      999999999888877664 3


Q ss_pred             HHHHHHHHHHHhhcccccchhHHHH-HHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHH
Q 023815          177 QFSFFIHIQKYVLGRSVVITRSLIF-TTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELL  247 (276)
Q Consensus       177 ~l~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~  247 (276)
                      ++.+|.+    +.|.   .++..+. .....++|+.+.+++++++|+|+|+++|+||+|+++|+++..+++.
T Consensus       152 ~l~g~~a----v~g~---~~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~~  216 (289)
T PLN02809        152 ALLGWAA----VKGS---LDPAVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTG  216 (289)
T ss_pred             HHHHHHH----HhCC---CChHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHHH
Confidence            3444543    3342   2222222 2334556788889999999999999999999999999997666664

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=99.96  E-value=2.9e-28  Score=218.97  Aligned_cols=216  Identities=15%  Similarity=0.146  Sum_probs=154.6

Q ss_pred             HHHHHHHHhhccchhHHHHHHHHHhhhhcc------ccC-CCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhc
Q 023815           23 KNLKSLYRFTRPNTLNGLVIAVTSICCLPL------QNL-GDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKIN   95 (276)
Q Consensus        23 ~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~------~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~   95 (276)
                      +++|.|.++.|-.+.+-++=-...|.++|.      ++. ...++..+   +...++.+.+++++|++||+.|+|.|++|
T Consensus         2 ~~~~~~~~~i~~~ht~Falpfa~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~   78 (300)
T PRK12876          2 MRIKYFQQLINCKYALFSALFLSASTVFALSLPEISFSLFSLGGIKTI---SLGGSAFFCARTVGIIVNQIIDCAIDKKN   78 (300)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcCCCCHHHH---HHHHHHHHHHHHHHHHHHhHHHhcccCCC
Confidence            458999999999874433221234677764      220 01122221   12356778899999999999999999999


Q ss_pred             CC--CCccccCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHh
Q 023815           96 KP--DLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYG  173 (276)
Q Consensus        96 ~~--~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g  173 (276)
                      +|  +||+|+|++|++||+.+.+.+.+++++++..+|+.+..++. ++++..+.|+.      +||++++++++.|...+
T Consensus        79 ~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~~-~~~~~~~iY~~------~KR~t~~~~~vLGl~~~  151 (300)
T PRK12876         79 PRTSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLAV-LSTLLMIIYPY------TKRVTFLCHWILGLVYY  151 (300)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHh------HhcCCchhHHHHHHHHH
Confidence            84  99999999999999999987777788888888987766553 55556688986      99999999998888877


Q ss_pred             hhHHHHHHHHHHHHhhcccccchhHH----HHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHH
Q 023815          174 VGIQFSFFIHIQKYVLGRSVVITRSL----IFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNL  249 (276)
Q Consensus       174 ~~~~l~~~~~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l  249 (276)
                      . .++++|.+    +.+.+  .++..    ++.....++|..+.+++++.+|+|+|++.|+||+|+++|++++.+++..+
T Consensus       152 ~-~~l~~~~A----v~~~~--~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~  224 (300)
T PRK12876        152 L-AILMNFFA----IIETP--LSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASAN  224 (300)
T ss_pred             H-HHHHHHHH----HhcCc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHH
Confidence            5 44555543    23321  22211    11122334566689999999999999999999999999999987776655


Q ss_pred             HHHhhh
Q 023815          250 FKNMDL  255 (276)
Q Consensus       250 ~~~~~~  255 (276)
                      +.++.+
T Consensus       225 ~~l~~~  230 (300)
T PRK12876        225 LIASAI  230 (300)
T ss_pred             HHHHHH
Confidence            554333

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=99.96  E-value=3.2e-28  Score=218.67  Aligned_cols=213  Identities=16%  Similarity=0.149  Sum_probs=152.7

Q ss_pred             hhHHHHHHHHhhccchhHHHH---HHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcCC
Q 023815           21 FLKNLKSLYRFTRPNTLNGLV---IAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKP   97 (276)
Q Consensus        21 ~~~~l~~~~~l~Rp~~~~~~~---~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~~   97 (276)
                      .++++++|+|++||+++..+.   ++.+.|.+++..+.+  +...+   +.+.++..++++++|++||+.|+|+|++|+|
T Consensus         3 ~~~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~~--~~~~~---~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~R   77 (294)
T PRK12873          3 RSIKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAPP--SLLLL---LLIILGGLAVSGAGCIANDLWDRRIDRKVER   77 (294)
T ss_pred             chHhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCCC--CHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhccCCCc
Confidence            456799999998888766554   455667777643322  22221   1235677788999999999999999998864


Q ss_pred             --CCccccCCCCHHHHHHHHHHHHHHHHHHHHHh----chhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHH
Q 023815           98 --DLPLASGDFSIKTGVAITLTCAMMSLAMGIMI----GSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIG  171 (276)
Q Consensus        98 --~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~----~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~  171 (276)
                        +||+++|++++++|+.+..++.++++.+++.+    |+.+..++ .++++....|+.      +||++.+.+++.|..
T Consensus        78 T~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~vlg~~  150 (294)
T PRK12873         78 TKNRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLA-FLALPPILIYPS------AKRWFAYPQAILALC  150 (294)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHHH------HHhccccchHHHHHH
Confidence              99999999999999999999999998887665    34444443 344456788986      899998898888776


Q ss_pred             HhhhHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHH
Q 023815          172 YGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFK  251 (276)
Q Consensus       172 ~g~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~  251 (276)
                      .+ .+++.+|.+    +.|. .++....++.....++|+.+.+++++++|+|+|+++|++|+|+++|++.. +....++.
T Consensus       151 ~a-~~~l~gw~A----v~g~-~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~~~-~~~~~~~~  223 (294)
T PRK12873        151 WG-FAVLIPWAA----AEGS-LNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSNAL-KTVQICYF  223 (294)
T ss_pred             HH-hHHHHHHHH----HhCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChhhH-HHHHHHHH
Confidence            66 455666654    3342 12211223322455678889999999999999999999999999997544 44444433


Q ss_pred             H
Q 023815          252 N  252 (276)
Q Consensus       252 ~  252 (276)
                      +
T Consensus       224 ~  224 (294)
T PRK12873        224 L  224 (294)
T ss_pred             H
Confidence            3

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.96  E-value=3.1e-27  Score=211.84  Aligned_cols=216  Identities=18%  Similarity=0.225  Sum_probs=137.7

Q ss_pred             hhHHHHHHHHhhccchhHHHHHHHHHhhhhccccCCC-CChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcCCCC
Q 023815           21 FLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGD-LTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKPDL   99 (276)
Q Consensus        21 ~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~~~R   99 (276)
                      ...++|.+++++||++|..+..+++.|.++|.....+ +++. ++.++.  ...+..+.+.+.+|||+|+|+||.|++++
T Consensus         4 ~~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~-~~~ll~--~~~i~~Nl~~y~iND~~D~D~Dr~~prk~   80 (282)
T PRK12875          4 LGDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPA-AVALFA--YFLFPANVFLYGVNDVFDADTDELNPKKD   80 (282)
T ss_pred             hHHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHH-HHHHHH--HHHHHHHHHHhcchhhhhhhccccCCCcc
Confidence            4567889999999999999999999999998654322 2332 111111  11122334455689999999999998765


Q ss_pred             ccccCCCC--HHHHHHHH-HHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhH
Q 023815          100 PLASGDFS--IKTGVAIT-LTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGI  176 (276)
Q Consensus       100 pl~~G~is--~~~a~~~~-~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~  176 (276)
                      .  ++.+.  .+.+.... .....+++.+....+.... ...+..+++++.||.  ||+|+|++++.+..+.|...  ++
T Consensus        81 ~--~r~~~~s~~~~~~~~~~l~~~l~l~l~~~~~~~~~-~~ll~~i~~~~~YS~--pP~rlk~~p~~~~~~~g~~~--~~  153 (282)
T PRK12875         81 R--EREVRYRGDRRVLVAVALSGALALAFLLVLPPAAW-PALLAFLVLSVEYSA--PPLRFKTTPVLDSLSNGLYI--LP  153 (282)
T ss_pred             C--CCCccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHcC--CCccchhccHHHHHHHHHHH--HH
Confidence            4  11122  12222111 1122333333333333222 223445678899999  99999999976543333321  23


Q ss_pred             HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhh
Q 023815          177 QFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL  255 (276)
Q Consensus       177 ~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~  255 (276)
                      .++.|+.    ..|   ..++..++.  ..++++.+.+++||+||+|+|+++|+||+|+++|+|++++++..++.++.+
T Consensus       154 ~~~~y~~----~tg---~~~~~~l~~--a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~  223 (282)
T PRK12875        154 GVAAYAL----VSG---SLPPLLAVA--GGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAA  223 (282)
T ss_pred             HHHHHHH----HcC---CCcHHHHHH--HHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHH
Confidence            3444442    123   234433333  235678889999999999999999999999999999999888888766554

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=99.95  E-value=9e-27  Score=210.51  Aligned_cols=213  Identities=17%  Similarity=0.225  Sum_probs=141.4

Q ss_pred             HHHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhc-------
Q 023815           23 KNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKIN-------   95 (276)
Q Consensus        23 ~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~-------   95 (276)
                      +++|+|++++||+++.....+++.|.++|.......++..+.  +.++.+.+.. .++|++|||+|+|.|++|       
T Consensus         3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~~~~--l~~l~~~l~~-~ag~~iND~~D~~~D~~~v~rtm~r   79 (297)
T PRK12871          3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWELTI--KAALIGLFGF-EAGFVLNDYVDRKRDRLDVENTLTR   79 (297)
T ss_pred             chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHHHHH--HHHHHHHHHH-HHHHHHhhHHHHhcCcchHhhhhhc
Confidence            468999999999988777777777887773211233443221  1123343444 556899999999999864       


Q ss_pred             --C--CCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhchhH---HHHHHHHHHHHHHHhcCCCCccccccc---hhhhH
Q 023815           96 --K--PDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPP---LAWGLILWFILVTAYSIDLPFLRWKRN---AFLAA  165 (276)
Q Consensus        96 --~--~~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~---~~~~~~~~~~~~~~Ys~~~pP~~lK~~---~~~~~  165 (276)
                        |  ++||+++|++++++++.+.+.+.++|+.++..++...   .+...+.+.++++.|+.      .||.   | .+.
T Consensus        80 ~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~~~~~~~~~~Y~~------~kr~~~~p-~~~  152 (297)
T PRK12871         80 YWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIMLYSYGIEAFYQV------KKRNQKYP-VAQ  152 (297)
T ss_pred             cccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cccccccc-HHH
Confidence              2  4899999999999999999999999988876654321   21222344456677775      2332   4 222


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHH
Q 023815          166 ISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKE  245 (276)
Q Consensus       166 ~~v~~~~g~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l  245 (276)
                      +.-+...+. +++.++.     ..|   ..+...+....+.++|+.+.+..||++|+|+|+++|+||+|+++|++++++.
T Consensus       153 l~G~~~~~~-~~~~g~~-----~~g---~~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~  223 (297)
T PRK12871        153 LLGRTDFTL-FPAAGYL-----CYG---QPDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYW  223 (297)
T ss_pred             HHHHHHHHH-HHHHHHH-----HhC---CCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHH
Confidence            222223332 3444342     223   2333334444566778899999999999999999999999999999999876


Q ss_pred             HHHHHHHhh
Q 023815          246 LLNLFKNMD  254 (276)
Q Consensus       246 ~~~l~~~~~  254 (276)
                      ...+..+..
T Consensus       224 i~~~~~l~~  232 (297)
T PRK12871        224 VTGFTALHF  232 (297)
T ss_pred             HHHHHHHHH
Confidence            665544443

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.95  E-value=6.4e-27  Score=210.81  Aligned_cols=214  Identities=23%  Similarity=0.262  Sum_probs=148.3

Q ss_pred             HHHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcCCCCccc
Q 023815           23 KNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKPDLPLA  102 (276)
Q Consensus        23 ~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~~~Rpl~  102 (276)
                      +-+++++++.|+.+...+..+...+....  ...+... ...    ..++.++.+.++|.+|||+|+|+|+.|+|+||.+
T Consensus         2 ~~~~~~~~~~~~~~~~~a~~~~~l~~~~~--~~~~~~~-~~~----~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~   74 (285)
T PRK12872          2 KLLFAFLKLFRYGNLLIAALGQSLVYMAS--LLLGLPI-SWL----LLLITFLIAAAVYIINYLTDLEEDIINKPERVVF   74 (285)
T ss_pred             hHHHHHHHHHHHccHHHHHHHHHHHHHHH--HHHcChh-HHH----HHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH
Confidence            45789999999998777666554332110  0111111 111    2356677888899999999999999999999988


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHH-----hchhHHHHHHHHHHHHHHHhcCCCCcc-ccccchhhhHHHHHHHHhhhH
Q 023815          103 SGDFSIKTGVAITLTCAMMSLAMGIM-----IGSPPLAWGLILWFILVTAYSIDLPFL-RWKRNAFLAAISIMIGYGVGI  176 (276)
Q Consensus       103 ~G~is~~~a~~~~~~~~~~g~~l~~~-----~~~~~~~~~~~~~~~~~~~Ys~~~pP~-~lK~~~~~~~~~v~~~~g~~~  176 (276)
                      ++    +++......+..++..++..     .|++.+.+ .+++.+.+++||.  ||. ++||.|.++|+++|..+|..+
T Consensus        75 s~----~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~Ys~--~~~~~lk~~p~~~~~~vg~~~g~~~  147 (285)
T PRK12872         75 SE----TKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALI-FIIPLILGILYSV--FFKRRLKRIPLFKNLVVSLLWALSP  147 (285)
T ss_pred             HH----HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHHHHhC--hhHHHHhhhhhHhhHHHHHHHHHHH
Confidence            54    44444444444443333322     35544443 4566677999999  665 589999999999999999666


Q ss_pred             HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhhh
Q 023815          177 QFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDLE  256 (276)
Q Consensus       177 ~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~~  256 (276)
                      .++.++.     .+.  .++...+....+++++..+++..+|++|+|+|+++|++|+|+++|+|+++++...+..++++.
T Consensus       148 ~~~~~~~-----~~~--~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~  220 (285)
T PRK12872        148 LILGVYY-----YQL--TIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLIL  220 (285)
T ss_pred             HHHHHHh-----ccc--ccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHH
Confidence            5544432     111  123333433445666677889999999999999999999999999999999999998887763


Q ss_pred             h
Q 023815          257 D  257 (276)
Q Consensus       257 ~  257 (276)
                      .
T Consensus       221 ~  221 (285)
T PRK12872        221 L  221 (285)
T ss_pred             H
Confidence            3

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=3.9e-27  Score=208.89  Aligned_cols=217  Identities=22%  Similarity=0.240  Sum_probs=163.4

Q ss_pred             hhHHHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcCC--C
Q 023815           21 FLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKP--D   98 (276)
Q Consensus        21 ~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~~--~   98 (276)
                      ...++|+|++++||+....++++.+.|+.+|.++  ..++..+   +.+.++..+..+++|++|+++|+|+|++++|  +
T Consensus        14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~~--~~~~~l~---~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~   88 (304)
T COG0109          14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPRG--SINPLLL---LLTLLGGALGAGGAGAFNMYIDRDIDALMERTRK   88 (304)
T ss_pred             hHHHHHHHHHHhCCeeeehHHHHHHHHHHHcccc--cccHHHH---HHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccC
Confidence            5578999999999999999999999999999752  3333322   2235777888899999999999999999875  8


Q ss_pred             CccccCCCCHHHHHHHHHHHHHHHHHHH-HHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhHH
Q 023815           99 LPLASGDFSIKTGVAITLTCAMMSLAMG-IMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQ  177 (276)
Q Consensus        99 Rpl~~G~is~~~a~~~~~~~~~~g~~l~-~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~  177 (276)
                      ||+++|+++++|++.++..+.++|+.+. +..|+....++++..++..+.||.     ++||++. -|+++|...|+.++
T Consensus        89 RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~-----~lKR~T~-~NiviGg~aGa~Pp  162 (304)
T COG0109          89 RPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTL-----WLKRRTP-QNIVIGGFAGAMPP  162 (304)
T ss_pred             CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-----hccCCcc-cceeeeeccccccc
Confidence            9999999999999999999999999887 667766655554444556889998     8999995 68899999999899


Q ss_pred             HHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHHhhh
Q 023815          178 FSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKNMDL  255 (276)
Q Consensus       178 l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~  255 (276)
                      +.+|.+    +.|. .+.....++...|+|...+-..+  .++=.|+.+++|++++|++-|++.+++......++...
T Consensus       163 liGwaA----vtg~-~~~~a~~Lf~IiF~WtPpHfwAL--Al~~~~DY~~AgiPMlPvv~G~~~t~~~I~~y~~~l~~  233 (304)
T COG0109         163 LIGWAA----VTGS-ISLGAILLFAIIFLWTPPHFWAL--ALKYKDDYKAAGIPMLPVVKGERRTKRQILLYTLALAP  233 (304)
T ss_pred             cceeee----eeCC-CCchHHHHHHHHHHhccHHHHHH--HHHHHHHHHHcCCCcccccccHHHHHHHHHHHHHHHHH
Confidence            888875    4453 22333233333333322221111  22335566899999999999999999887777665444

>PRK13592 ubiA prenyltransferase; Provisional

Probab=99.94  E-value=7.3e-26  Score=201.45  Aligned_cols=178  Identities=12%  Similarity=0.118  Sum_probs=129.8

Q ss_pred             HHHHHHHHHHhHhhcccchhhhhhcCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHh--
Q 023815           71 VPAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAY--  148 (276)
Q Consensus        71 ~~~~~~~~~~~~~Nd~~D~~~D~~~~~~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Y--  148 (276)
                      +..++...++|++|||+|+|+||+|+|+||+|||++|+++++.++..+.++++.++... .    .. ....+..+.|  
T Consensus        53 ~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~-~----i~-i~~~~i~~lY~~  126 (299)
T PRK13592         53 FTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLF-M----NN-VGWFLFLYIYGT  126 (299)
T ss_pred             HHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-H----HH-HHHHHHHHHHHH
Confidence            34556677889999999999999999999999999999999999988877777766444 1    11 1222345566  


Q ss_pred             ---cCCCCccccccchhhhHHHHHHHHhhhHHHH--HHHH-HHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCCh
Q 023815          149 ---SIDLPFLRWKRNAFLAAISIMIGYGVGIQFS--FFIH-IQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDV  222 (276)
Q Consensus       149 ---s~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~--~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~  222 (276)
                         +.     ++|+.++.||+.++...|..+..+  .|.+ .+....|.+ ......++.....++.++++|+.+|++| 
T Consensus       127 lm~a~-----~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~-~~~~~~~~l~l~afl~~l~rEI~KdieD-  199 (299)
T PRK13592        127 LMSFW-----FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLP-LLSLPTVLLAFTMYFPSLIWEVCRKIRA-  199 (299)
T ss_pred             HHHHH-----HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccc-hhhHHHHHHHHHHHHHHHHHHHHHhhcC-
Confidence               77     899999999999999998544222  1211 011122211 1111012222345556789999999999 


Q ss_pred             HhhHhcCCcccchhhchHhHHHHHHHHHHHhhhhhcCCCCCC
Q 023815          223 DGDKEYGIRTFSVMLGKERMIKELLNLFKNMDLEDESPLPGE  264 (276)
Q Consensus       223 e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~~~  264 (276)
                      |||++ |.+|+|+++|.|++.+++.++..++.+  .||+|+.
T Consensus       200 ~gd~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v~--~s~lp~~  238 (299)
T PRK13592        200 PKDET-EYVTYSKLFGYKKATRFIEVVTLLDIL--TNFALLW  238 (299)
T ss_pred             Ccccc-CCeeechhccchhHHHHHHHHHHHHHH--HhhHHHH
Confidence            88885 599999999999999999999999888  8888754

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.94  E-value=1.7e-25  Score=197.59  Aligned_cols=162  Identities=25%  Similarity=0.428  Sum_probs=128.0

Q ss_pred             HHHHHHHHHHhHhhcccchhhhhh--cCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHh
Q 023815           71 VPAALMAIYMTAINQLVDVKIDKI--NKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAY  148 (276)
Q Consensus        71 ~~~~~~~~~~~~~Nd~~D~~~D~~--~~~~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Y  148 (276)
                      ++.++.+.++|.+||+.|+|+|+.  |+|+||+++|+++++++...+..+.++++++++..++..+.+. +++.+.+++|
T Consensus        30 l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~~~~l~l~l~~~~~~~~~~~~-~~~~~~~~~Y  108 (257)
T PF01040_consen   30 LAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALILLLLGLLLALLLGPWFLLIL-LLGFLLGLLY  108 (257)
T ss_pred             HHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHHHHHHHHHHHHhcCchhHHHH-HHHHHHHHHH
Confidence            445578888999999999999999  8899999999999999999999999999999887787655543 4555667999


Q ss_pred             cCCCCccccccchhhhHHHHHHHHhhhHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhc
Q 023815          149 SIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEY  228 (276)
Q Consensus       149 s~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~a  228 (276)
                      |   ||+|+||++++++++++..++..+..+.+.      .++  ..+...+....+.+++.......+|++|+|+|+++
T Consensus       109 s---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~  177 (257)
T PF01040_consen  109 S---PPLRLKRRPLWGELVVALVFGLLILLGAYA------AGG--DPPPPPFLLAIFFFLLIFAIMFFNDIRDIEGDRKA  177 (257)
T ss_pred             h---hhhhhcceeccchhhHHHhhhHhhhhhhhh------cCC--cccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHc
Confidence            9   677999999889999999888555444332      222  22323333323334556666777899999999999


Q ss_pred             CCcccchhhchHhHHH
Q 023815          229 GIRTFSVMLGKERMIK  244 (276)
Q Consensus       229 G~~Tl~v~lG~~~a~~  244 (276)
                      |++|+|+++|++++++
T Consensus       178 g~~Tl~v~~G~~~~~~  193 (257)
T PF01040_consen  178 GRRTLPVLLGEKKARY  193 (257)
T ss_pred             CCcchHHHHHHHHHHH
Confidence            9999999999999998

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.93  E-value=2.7e-24  Score=192.94  Aligned_cols=167  Identities=22%  Similarity=0.217  Sum_probs=123.8

Q ss_pred             HHHHHHHhHhhcccchhhhhhcCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCC--
Q 023815           74 ALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSID--  151 (276)
Q Consensus        74 ~~~~~~~~~~Nd~~D~~~D~~~~~~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~--  151 (276)
                      .+...++|++|||+|+|+|++|+|+||.+    +++.+..++.+..++|+.+++..|++.  + .+++.+.+++||.+  
T Consensus        68 ~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~g~~l--l-~ll~~l~g~lYS~Glk  140 (307)
T PRK13591         68 GLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMDGMLL--L-AFLPFITGYLYSKGIK  140 (307)
T ss_pred             HHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHHhHHH--H-HHHHHHHHHHhcCCCC
Confidence            34566678899999999999999999987    688899999999999999998888532  2 24666789999972  


Q ss_pred             C--CccccccchhhhHHHHHHHHhhhHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcC
Q 023815          152 L--PFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYG  229 (276)
Q Consensus       152 ~--pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG  229 (276)
                      .  .|+|+|+++.+||++++..+|.....+  .  +. ..+   .+.+. .....+.....++++++||++|+|+|+++|
T Consensus       141 ~~P~plklK~~~glGnl~V~i~~G~~i~g~--~--g~-~~~---~~~~~-~~i~l~~~~~l~~~~iindirDiEGDr~~G  211 (307)
T PRK13591        141 IGKFALKLKGGLGVKNIVVGITWGGFIAGI--A--GS-YCG---SLIPV-GLIFLFFGVKLFINSCVYDFKDVKGDTLAG  211 (307)
T ss_pred             CCCccccccCCCchhHHHHHHHHHHHHHHH--H--Hh-hhh---hHHHH-HHHHHHHHHHHHHHHHHHHhhhhHhHHHcC
Confidence            1  144889998899999999999533211  1  11 111   11111 111112212235677899999999999999


Q ss_pred             CcccchhhchHhHHHHHHHHHHHhhhh
Q 023815          230 IRTFSVMLGKERMIKELLNLFKNMDLE  256 (276)
Q Consensus       230 ~~Tl~v~lG~~~a~~l~~~l~~~~~~~  256 (276)
                      ++|+|+++|+++++++...+++.+++.
T Consensus       212 ~kTLPV~lG~~~A~~l~~~l~~~~~l~  238 (307)
T PRK13591        212 IKTLPVSLGEQKTRNLLLGIHLFSHLV  238 (307)
T ss_pred             CeeEEEEECHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998877763

>PLN02776 prenyltransferase

Probab=99.93  E-value=2.9e-24  Score=195.94  Aligned_cols=203  Identities=16%  Similarity=0.074  Sum_probs=147.3

Q ss_pred             hhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcC--CCCccccCCCCH
Q 023815           31 FTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINK--PDLPLASGDFSI  108 (276)
Q Consensus        31 l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~--~~Rpl~~G~is~  108 (276)
                      ++||+....++++.+.|+++|.++..+  +..+   +.+.++.+++++++|++||++|+|+|++|+  ++||+|+|++++
T Consensus         1 L~Kpri~~lv~~ta~~G~~lA~~~~~~--~~~l---~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~   75 (341)
T PLN02776          1 LSKARLSALVVATSGAGFVLGSGEAID--LPGL---GWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISV   75 (341)
T ss_pred             CCcchhHHHHHHHHHHHHHHhcCCCCC--HHHH---HHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCH
Confidence            478999899999999999998543322  2221   123567888999999999999999999976  499999999999


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhHHHHHHHHHHHH
Q 023815          109 KTGVAITLTCAMMSLAM-GIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQFSFFIHIQKY  187 (276)
Q Consensus       109 ~~a~~~~~~~~~~g~~l-~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l~~~~~~~~~  187 (276)
                      ++|+.+++.+.++|+.+ ++.+|..+..++....++....||.      +||++.+ +.++|...|+++++++|.+    
T Consensus        76 ~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt~------lKR~t~~-~~~lG~~~Ga~ppL~Gw~A----  144 (341)
T PLN02776         76 PHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYTP------LKQIHPA-NTWVGAVVGAIPPLMGWAA----  144 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh------HccCCch-hHHHHHHHHHHHHHHHHHH----
Confidence            99999999999988855 4567876665543222333567886      9999976 5799999998888888875    


Q ss_pred             hhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhh--chHhHHHHHHHHHHH
Q 023815          188 VLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVML--GKERMIKELLNLFKN  252 (276)
Q Consensus       188 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~l--G~~~a~~l~~~l~~~  252 (276)
                      +.|   .+++..++.....++|+........+.|+|+|+++|++++|+.-  |+++++.+....+.+
T Consensus       145 vtg---~~~~~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l  208 (341)
T PLN02776        145 ASG---QLDAGAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALRNCLYL  208 (341)
T ss_pred             HcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHHHHHHH
Confidence            333   23333343334455666644555566778899999999999976  456666555444443

>PRK08238 hypothetical protein; Validated

Probab=99.88  E-value=3e-21  Score=184.72  Aligned_cols=194  Identities=21%  Similarity=0.306  Sum_probs=137.9

Q ss_pred             hhhhhhhHHHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhc
Q 023815           16 SFQAGFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKIN   95 (276)
Q Consensus        16 ~~~~~~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~   95 (276)
                      +..++.+.++++|++++||++|.++++.++ +++++ +...+.+. +. ..+...++..++++++|++||++|+|.||+|
T Consensus       182 ~~~~~~~~~~~~~~~l~Rp~q~~kn~l~~~-p~l~a-~~~~~~~~-~~-~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~  257 (479)
T PRK08238        182 RVFPPRPARLRTWLKALRVHQWAKNLLVFV-PLLAA-HQFGDLQA-LL-AALLAFLAFSLCASAVYILNDLLDLEADRAH  257 (479)
T ss_pred             eecCCCchHHHHHHHHhCCcHHHHHHHHHH-HHHHh-cccCChHH-HH-HHHHHHHHHHHHHHHHHHHHhhHHhhhhccC
Confidence            344566778999999999999999998754 66665 33222221 11 1122244555778888999999999999998


Q ss_pred             --CCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHh
Q 023815           96 --KPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYG  173 (276)
Q Consensus        96 --~~~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g  173 (276)
                        ||+||++||++++++|+.++.++.++|+.+++.+|+... ...+..+++.++||.     ++||+++++++++++.++
T Consensus       258 ~rk~~RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~~~~-~~~~~~~~~~~~Ys~-----~lKr~~~~~~~~la~~~~  331 (479)
T PRK08238        258 PRKRRRPFASGALPIPFGLAAAPLLLLAGLALALALGPAFL-LVLLAYLALTLAYSL-----RLKRKVLVDVLTLAALYT  331 (479)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHhhH-----HhcCCccccchHHHHHHH
Confidence              579999999999999999999999999999988887433 344566677889998     899999999999988876


Q ss_pred             hhHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCC
Q 023815          174 VGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGI  230 (276)
Q Consensus       174 ~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~  230 (276)
                      .-+..| +.     ..+    .+++.|+.. +..++.+...+.+...|.++++..|.
T Consensus       332 lr~~~G-~~-----a~~----~~~s~wll~-~~~~~~l~la~~KR~~El~~~~~~~~  377 (479)
T PRK08238        332 LRIIAG-AA-----AIG----VALSFWLLA-FSMFFFLSLALVKRYTELRRALQRGK  377 (479)
T ss_pred             HHHHHH-HH-----Hhc----cCHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHhcCC
Confidence            433333 22     222    122223321 22223445577788888888887775

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=99.88  E-value=3.3e-21  Score=173.69  Aligned_cols=145  Identities=19%  Similarity=0.289  Sum_probs=109.1

Q ss_pred             hhhHHHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhc--CC
Q 023815           20 GFLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKIN--KP   97 (276)
Q Consensus        20 ~~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~--~~   97 (276)
                      +.++++|+|++++||++|.++.+.+.. .+++.. ..+.+. ....++ ..++..+.+++++++||++|+|+||+|  ||
T Consensus         6 ~~~~~l~~~l~L~RP~~w~~nll~~~~-~~~a~~-~~~~~~-~~~~ll-afl~~~l~~sa~y~iND~~D~e~Dr~~prk~   81 (295)
T PRK12324          6 PPKNLLAGYLKLLRPKQWIKNLFVFAA-PIFAGN-LLNPGA-LLKVLL-AFVLFCLASSAVYLVNDIRDVEADRLHPTKR   81 (295)
T ss_pred             ChHHHHHHHHHHhCchHHHHHHHHHHH-HHHHHh-hcccch-HHHHHH-HHHHHHHHHHHHHHHHhHHHHHhhccCCCCC
Confidence            345679999999999999999886553 344422 112111 111111 223344567778899999999999997  67


Q ss_pred             CCccccCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhh
Q 023815           98 DLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGV  174 (276)
Q Consensus        98 ~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~  174 (276)
                      +||+++|++++++++.++.++..+|+.+++.+++....+ .+..++..+.||.     ++||++.+++++++..++.
T Consensus        82 ~RPlasG~is~~~A~~~~~~l~~~~l~la~~l~~~~~~~-~~~~~~~~~~Ys~-----~lK~~~~~d~l~va~~~~l  152 (295)
T PRK12324         82 NRPIASGVVSVSLAYILAVVLLVASLALAYLLSPKLALV-LLVYLVLNLAYSF-----KLKHQPVLDVFCIASGFVL  152 (295)
T ss_pred             CCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhH-----HhcCCchhhHHHHHHHHHH
Confidence            999999999999999999999999999988888655543 3456677889998     8999999999998887763

>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]

Probab=99.80  E-value=4.3e-20  Score=159.99  Aligned_cols=216  Identities=19%  Similarity=0.187  Sum_probs=153.1

Q ss_pred             hhhhhhhHHHHHHHHhhccchhHHHHH---HHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhh
Q 023815           16 SFQAGFLKNLKSLYRFTRPNTLNGLVI---AVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKID   92 (276)
Q Consensus        16 ~~~~~~~~~l~~~~~l~Rp~~~~~~~~---~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D   92 (276)
                      +..+..+.++|.|.|++|.+..+++.+   +..-..++|.... ..+..-.++++  -++.+++.+++|.+||..|+|.|
T Consensus        55 s~~~~~p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAdag-~~p~~~mL~LF--G~GAllMRgAGCtINDlwDkdlD  131 (353)
T KOG1381|consen   55 SLVASSPKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADAG-LLPSIKMLALF--GVGALLMRGAGCTINDLWDKDLD  131 (353)
T ss_pred             hhhhcCCccchhHHHHHhcCCCceeeeeecchHHHHHhccCCC-ccchhHHHHHh--cccHHHhccCCceehhhhhhhhh
Confidence            355566678999999999998776653   2222233443211 11111123332  35778899999999999999999


Q ss_pred             hhcC--CCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHH
Q 023815           93 KINK--PDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMI  170 (276)
Q Consensus        93 ~~~~--~~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~  170 (276)
                      ++.+  +.||+++|++++++|..+......+|+.+...+|+....++ ..++...+.|+.      +||.+++.+++.|.
T Consensus       132 ~KVeRtklRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi~lg-~~sl~~v~~ypl------~kr~TY~pq~vLgl  204 (353)
T KOG1381|consen  132 AKVERTKLRPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIALG-ASSLALVITYPL------MKRFTYWPQLVLGL  204 (353)
T ss_pred             hhHhhhcccccccCCcchhHHHHHHHHHHHHhHHHHHhccHHHHHhc-ccccccEEEeeh------hhhcchhHHHHHhh
Confidence            9754  48999999999999999988888888888888888776543 455566778887      99999999999988


Q ss_pred             HHhhhHHHHHHHHHHHHhhcccccchhHHHHHH-HHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHH
Q 023815          171 GYGVGIQFSFFIHIQKYVLGRSVVITRSLIFTT-GVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNL  249 (276)
Q Consensus       171 ~~g~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l  249 (276)
                      ++.....+| |.+    +-|   +..++..+.. +--..|+...+.+++.+|.++|.++|+++.+.++|+++-.+++..-
T Consensus       205 tfnwGAllG-w~A----~~g---~~~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~gf~  276 (353)
T KOG1381|consen  205 TFNWGALLG-WCA----LKG---SLSPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSGFG  276 (353)
T ss_pred             hcchhhhhc-chh----hcC---ccChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHhhhh
Confidence            776444444 322    223   1222222221 1122467778999999999999999999999999998887776543

>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]

Probab=99.62  E-value=3.9e-16  Score=138.48  Aligned_cols=212  Identities=16%  Similarity=0.139  Sum_probs=148.8

Q ss_pred             hHHHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhhhcCC--CC
Q 023815           22 LKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDVKIDKINKP--DL   99 (276)
Q Consensus        22 ~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~~--~R   99 (276)
                      .+.++.|+|++||+.-...+++...|+++|.+.+ +++. +.    .+.++..+.+.++|++||+++...|++++|  +|
T Consensus        91 ~k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p~-s~~~-l~----~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~R  164 (409)
T KOG1380|consen   91 GKYARCYLELSKPRLTMLVVLTTMTGYALAPGPF-SFPT-LL----YTTVGTGLCSASANAINQIFEPPFDSQMKRTQNR  164 (409)
T ss_pred             cchHHHHHHhcccceEEEEeeeccccccccccCC-Ccch-hH----HHhhhhHHHHhhhHhhhhhccCCchhhhHhhccc
Confidence            3568899999999987788888888999997653 3332 21    234677888999999999999999999875  89


Q ss_pred             ccccCCCCHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHHhhhHHH
Q 023815          100 PLASGDFSIKTGVAITLTCAMMSLAMGIM-IGSPPLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGYGVGIQF  178 (276)
Q Consensus       100 pl~~G~is~~~a~~~~~~~~~~g~~l~~~-~~~~~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~g~~~~l  178 (276)
                      |+++|++++.+|+.++.+....|+.+.++ .|+....++    ..-.++|...|.|  +||... .|..+|.+.|+++++
T Consensus       165 plv~g~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lg----a~Ni~LY~~vYTP--lKrihi-inTWvGavVGAIPPL  237 (409)
T KOG1380|consen  165 PLVRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALG----AGNIFLYAGVYTP--LKRIHI-INTWVGAVVGAIPPL  237 (409)
T ss_pred             ccccCccChHHHHHHHHHhccccceeeeecccHHHHHHh----hcchheeeccccc--hhhhhh-hhhHHHHHhccCCcc
Confidence            99999999999999998888888866544 665443332    2233444443333  899984 678999999999999


Q ss_pred             HHHHHHHHHhhcccccchhHHHHHHHHHHHHH--HHHHHHccCCChHhhHhcCCcccchh---hchHhHHHHHHHHHHHh
Q 023815          179 SFFIHIQKYVLGRSVVITRSLIFTTGVITCMS--LAKALLKDLHDVDGDKEYGIRTFSVM---LGKERMIKELLNLFKNM  253 (276)
Q Consensus       179 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~e~D~~aG~~Tl~v~---lG~~~a~~l~~~l~~~~  253 (276)
                      .+|.+.    .|.   .++..+.....++.|.  .-..+..++||  +..++|.+++++.   +-++.+.+.+..++.+.
T Consensus       238 MGwAAa----sg~---l~~ga~iLa~~LyaWQfPHFnaLS~~lR~--DYs~~GY~Mma~~np~l~rr~alr~s~a~~~L~  308 (409)
T KOG1380|consen  238 MGWAAA----SGL---LDPGAMILAGILYAWQFPHFNALSWNLRN--DYSKAGYRMMAVTNPGLCRRVALRYSLAFLPLS  308 (409)
T ss_pred             chhhhh----ccC---CCccHHHHHHHHHHhcccchhhhhhhhch--hhhhccEEEEEeeccchhhHHHHHHHHHHhhhh
Confidence            888752    231   2233333322333332  23334445543  4579999999985   44577888888887776


Q ss_pred             hh
Q 023815          254 DL  255 (276)
Q Consensus       254 ~~  255 (276)
                      +.
T Consensus       309 ~~  310 (409)
T KOG1380|consen  309 YA  310 (409)
T ss_pred             cc
Confidence            55

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=99.53  E-value=1.1e-15  Score=130.00  Aligned_cols=222  Identities=16%  Similarity=0.089  Sum_probs=153.4

Q ss_pred             hhHHHHHHHHhhccchhHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhHhhcccch--hhhhhcCCC
Q 023815           21 FLKNLKSLYRFTRPNTLNGLVIAVTSICCLPLQNLGDLTPTFFMEVFKTVVPAALMAIYMTAINQLVDV--KIDKINKPD   98 (276)
Q Consensus        21 ~~~~l~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Nd~~D~--~~D~~~~~~   98 (276)
                      ..++.+.|+...||+....++.+...|.++|..+....++.+...++ +.++....+.+.|..|.|+|.  .+|.+...+
T Consensus        57 ~~~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~l~~~fl-~a~avlavh~agnlvntyfdf~kgid~kkadd  135 (359)
T KOG4581|consen   57 TFMKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFRLATFFL-CAFAVLAVHCAGNLVNTYFDFIKGIDHKKADD  135 (359)
T ss_pred             HHHHHHHHHhhhcccccccccchHhhhhHHHHhhccccchhHHHHHH-HHhhheeeecccchhhhhhhhhhccccccccc
Confidence            55789999999999998888889999999997543223333322222 245566688999999999997  478876679


Q ss_pred             CccccCCCCHHHHHHHHHHHHHHHHHHH---HHhchh---HHHHHHHHHHHHHHHhcCCCCccccccchhhhHHHHHHHH
Q 023815           99 LPLASGDFSIKTGVAITLTCAMMSLAMG---IMIGSP---PLAWGLILWFILVTAYSIDLPFLRWKRNAFLAAISIMIGY  172 (276)
Q Consensus        99 Rpl~~G~is~~~a~~~~~~~~~~g~~l~---~~~~~~---~~~~~~~~~~~~~~~Ys~~~pP~~lK~~~~~~~~~v~~~~  172 (276)
                      |.++...+++.++..++.++...|...+   ..+++.   .+.+..+.++--+++|+.+   +.+|+.. +|.+++-+.+
T Consensus       136 rtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytgg---igfkyia-lgdliili~f  211 (359)
T KOG4581|consen  136 RTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTGG---IGFKYIA-LGDLIILILF  211 (359)
T ss_pred             hhHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEecc---cceEEEe-ccCEEEEEee
Confidence            9999999999999999988887765443   233432   2233334455557899973   3689888 5888887888


Q ss_pred             hhhHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccchhhchHhHHHHHHHHHHH
Q 023815          173 GVGIQFSFFIHIQKYVLGRSVVITRSLIFTTGVITCMSLAKALLKDLHDVDGDKEYGIRTFSVMLGKERMIKELLNLFKN  252 (276)
Q Consensus       173 g~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG~~~a~~l~~~l~~~  252 (276)
                      |++..+-.|.. |+   | ...+.+. .+. ....+-+-++.+.||.||.|+||++|+-|+++.+|+..+-.++..++..
T Consensus       212 gpiavlfaf~~-q~---g-~l~~~~l-~ya-iplalnteailhsnntrd~dndr~agivtlailig~t~s~ily~~llf~  284 (359)
T KOG4581|consen  212 GPIAVLFAFAI-QT---G-HLAIFPL-GYA-IPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTASHILYAMLLFA  284 (359)
T ss_pred             chHHHHHHHHH-hc---C-ceeEEee-hhe-eeeccchHHHhccCCCcccccccccCeEEEEEeecccHHHHHHHHHHHH
Confidence            86554433332 22   2 1122221 111 1222234467889999999999999999999999998888777665544


Q ss_pred             hh
Q 023815          253 MD  254 (276)
Q Consensus       253 ~~  254 (276)
                      -|
T Consensus       285 py  286 (359)
T KOG4581|consen  285 PY  286 (359)
T ss_pred             HH
Confidence            44

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=93.31  E-value=0.71  Score=41.97  Aligned_cols=32  Identities=19%  Similarity=0.204  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHhHhhcccchhhhhhcCCCCccc
Q 023815           71 VPAALMAIYMTAINQLVDVKIDKINKPDLPLA  102 (276)
Q Consensus        71 ~~~~~~~~~~~~~Nd~~D~~~D~~~~~~Rpl~  102 (276)
                      +.+......++..|+..|.|+|++|+|+.+.+
T Consensus       183 lp~gil~~~Il~aNNirDie~D~~~gk~TLav  214 (303)
T COG1575         183 LPVGILIANILLANNLRDIEEDIRNGKYTLAV  214 (303)
T ss_pred             HHHHHHHHHHHHhcccccchhHHhcCCcceee
Confidence            33444566677899999999999998754433

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=92.34  E-value=3.3  Score=37.39  Aligned_cols=55  Identities=16%  Similarity=0.162  Sum_probs=32.7

Q ss_pred             HHHHHHHhHhhcccchhhhhhcCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhc
Q 023815           74 ALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIG  130 (276)
Q Consensus        74 ~~~~~~~~~~Nd~~D~~~D~~~~~~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~~  130 (276)
                      .+...+...+||+-|+|.|++.+. |.++. ++..+.+..+...+..++..+-...+
T Consensus       175 ~l~~~~~~~in~i~Die~D~~aGi-~Tlav-~lG~~~a~~~~~~~~~~a~~~~~~~~  229 (282)
T PRK12875        175 WLWAMGMHTFSAIPDIEPDRAAGI-RTTAT-VLGERRTYAYCAACWLLAAAAFAAVD  229 (282)
T ss_pred             HHHHHHHHHHHhccCHHHHHHcCC-ccchh-hccHhhHHHHHHHHHHHHHHHHHHHH
Confidence            344445567899999999998653 33332 34456666666655555544433333

>PRK13591 ubiA prenyltransferase; Provisional

Probab=91.86  E-value=1.3  Score=40.56  Aligned_cols=66  Identities=21%  Similarity=0.368  Sum_probs=35.7

Q ss_pred             HhhcccchhhhhhcCC-CCccccCCCCHHHHHHHHHHHHHH---HHHHHHHhc-----hhHHHHHHHHHHHHHHHhcC
Q 023815           82 AINQLVDVKIDKINKP-DLPLASGDFSIKTGVAITLTCAMM---SLAMGIMIG-----SPPLAWGLILWFILVTAYSI  150 (276)
Q Consensus        82 ~~Nd~~D~~~D~~~~~-~Rpl~~G~is~~~a~~~~~~~~~~---g~~l~~~~~-----~~~~~~~~~~~~~~~~~Ys~  150 (276)
                      .+||+-|.|.|+.+++ .-|..=|   ++.+..+...+.++   ..+.+...|     +...+..+..++...+-|+.
T Consensus       197 iindirDiEGDr~~G~kTLPV~lG---~~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~  271 (307)
T PRK13591        197 CVYDFKDVKGDTLAGIKTLPVSLG---EQKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSS  271 (307)
T ss_pred             HHHHhhhhHhHHHcCCeeEEEEEC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcC
Confidence            5899999999999764 3333334   34443333322222   222222223     22233345567777788998

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=91.19  E-value=1.7  Score=39.29  Aligned_cols=53  Identities=11%  Similarity=0.120  Sum_probs=35.6

Q ss_pred             HHHHHhHhhcccchhhhhhcCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhc
Q 023815           76 MAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAMGIMIG  130 (276)
Q Consensus        76 ~~~~~~~~Nd~~D~~~D~~~~~~Rpl~~G~is~~~a~~~~~~~~~~g~~l~~~~~  130 (276)
                      ...+...+||+-|.|.||+++. |.++. ++.++.+..++..+.+++.+.....+
T Consensus       172 ~~~a~~ii~~irDie~Dr~~G~-~Tlpv-~lG~~~a~~~~~~l~~~a~~~~~~~~  224 (282)
T PRK13105        172 WGMASHAFGAVQDVVADREAGI-ASIAT-VLGARRTVRLAVGLYAAAAVLMLALP  224 (282)
T ss_pred             HHHHHHHHHhCcchHhHHHcCC-ccchH-HhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556678999999999998663 44443 45567777777766666655443333

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=91.16  E-value=1.2  Score=39.89  Aligned_cols=40  Identities=15%  Similarity=0.253  Sum_probs=23.6

Q ss_pred             HHHHhHhhcccchhhhhhcCC-CCccccCCCCHHHHHHHHHHHH
Q 023815           77 AIYMTAINQLVDVKIDKINKP-DLPLASGDFSIKTGVAITLTCA  119 (276)
Q Consensus        77 ~~~~~~~Nd~~D~~~D~~~~~-~Rpl~~G~is~~~a~~~~~~~~  119 (276)
                      ....+.+||.-|+|.|++++. .=|..-|+   +.+..+...+.
T Consensus       174 ~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~---~~t~~~~~~~~  214 (285)
T PRK12872        174 SFIREIVFDIKDIEGDRKSGLKTLPIVLGK---ERTLKFLLILN  214 (285)
T ss_pred             HHHHHHHHhcccchhHHHcCCcccchhcch---HHHHHHHHHHH
Confidence            334457899999999998653 33443343   44444443333

>PLN02922 prenyltransferase

Probab=89.75  E-value=2.4  Score=38.90  Aligned_cols=40  Identities=5%  Similarity=-0.017  Sum_probs=24.8

Q ss_pred             HHHHHhHhhcccchhhhhhcCCCCccccCCCCHHHHHHHHHH
Q 023815           76 MAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLT  117 (276)
Q Consensus        76 ~~~~~~~~Nd~~D~~~D~~~~~~Rpl~~G~is~~~a~~~~~~  117 (276)
                      ........||+-|+|+|++++++. ++- ++.++.+..+...
T Consensus       200 l~~~iL~~Nn~rD~e~D~~~Gk~T-L~v-~lG~~~a~~l~~~  239 (315)
T PLN02922        200 TTTLILFCSHFHQIDGDRAVGKMS-PLV-RLGTEKGSRVVRW  239 (315)
T ss_pred             HHHHHHHHccCcchhhHHHcCccc-eee-EEChHHHHHHHHH
Confidence            344556799999999999987533 322 2334555444333

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=89.54  E-value=3  Score=37.40  Aligned_cols=30  Identities=20%  Similarity=0.280  Sum_probs=20.6

Q ss_pred             HHHHHHhHhhcccchhhhhhcC-CCCccccC
Q 023815           75 LMAIYMTAINQLVDVKIDKINK-PDLPLASG  104 (276)
Q Consensus        75 ~~~~~~~~~Nd~~D~~~D~~~~-~~Rpl~~G  104 (276)
                      +.+..-..+||.-|+|.|++.+ |.-|..-|
T Consensus       169 ~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G  199 (282)
T TIGR01475       169 FWIAGFDLIYAIQDYEFDRKNGLHSIPARFG  199 (282)
T ss_pred             HHHHHHHHHHHHhhHHhHHHcCCCchHHHhc
Confidence            3344445699999999998755 45555555

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=89.05  E-value=2.9  Score=38.43  Aligned_cols=44  Identities=18%  Similarity=0.116  Sum_probs=26.9

Q ss_pred             HHHHHhHhhcccchhhhhhcCCCCccccCCCCHHHHHHHHHHHHHH
Q 023815           76 MAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMM  121 (276)
Q Consensus        76 ~~~~~~~~Nd~~D~~~D~~~~~~Rpl~~G~is~~~a~~~~~~~~~~  121 (276)
                      ........||+-|+|.|+.+++ |.++. ++.++.+......+..+
T Consensus       201 l~~~ill~Nn~~D~e~D~~~gk-~TL~v-~lG~~~a~~l~~~l~~~  244 (317)
T PRK13387        201 TIANIMLANNLRDLDEDIKNHR-YTLVY-YIGREKGVVLFAILFYA  244 (317)
T ss_pred             HHHHHHHhcCCccchhHHHcCC-eeeee-eEcHHhHHHHHHHHHHH
Confidence            3444567999999999999765 33332 34455555554443333

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=89.04  E-value=3  Score=38.07  Aligned_cols=39  Identities=10%  Similarity=0.035  Sum_probs=24.4

Q ss_pred             HHHHHhHhhcccchhhhhhcCCCCccccCCCCHHHHHHHHH
Q 023815           76 MAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITL  116 (276)
Q Consensus        76 ~~~~~~~~Nd~~D~~~D~~~~~~Rpl~~G~is~~~a~~~~~  116 (276)
                      ........||+-|+|+|+++++ |.++. ++.++.+..+..
T Consensus       186 l~~~IL~~Nn~rD~e~D~~~Gk-~TL~v-~lG~~~a~~ly~  224 (304)
T PRK07419        186 ATSLILFCSHFHQVEDDLAAGK-RSPIV-RLGTKRGAQLLP  224 (304)
T ss_pred             HHHHHHHHcCCcchhhHHHcCC-cceee-eechHhHHHHHH
Confidence            3445567999999999999875 33332 333444444433

>PRK13592 ubiA prenyltransferase; Provisional

Probab=88.69  E-value=2.7  Score=38.24  Aligned_cols=48  Identities=15%  Similarity=0.066  Sum_probs=31.7

Q ss_pred             HHHHHHHHHccCCChHhhHhc--CCcccchhhchHhHHHHHHHHHHHhhh
Q 023815          208 CMSLAKALLKDLHDVDGDKEY--GIRTFSVMLGKERMIKELLNLFKNMDL  255 (276)
Q Consensus       208 ~~~~~~~~~~~~~D~e~D~~a--G~~Tl~v~lG~~~a~~l~~~l~~~~~~  255 (276)
                      +.+.+..++||+.|+|-|+.+  .++--.=+..++.++..+..+..++..
T Consensus        57 ~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~  106 (299)
T PRK13592         57 GFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVL  106 (299)
T ss_pred             HHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHH
Confidence            334567889999999999754  333333355567777777666555544

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=87.77  E-value=5.5  Score=36.30  Aligned_cols=32  Identities=19%  Similarity=0.237  Sum_probs=21.3

Q ss_pred             HHHHHHHHhHhhcccchhhhhhcC-CCCccccC
Q 023815           73 AALMAIYMTAINQLVDVKIDKINK-PDLPLASG  104 (276)
Q Consensus        73 ~~~~~~~~~~~Nd~~D~~~D~~~~-~~Rpl~~G  104 (276)
                      .++...+-..+|+.-|+|.|++.+ +.-|+.-|
T Consensus       186 ~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G  218 (300)
T PRK13106        186 TILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG  218 (300)
T ss_pred             HHHHHHHHHHHHHccchhhHHHCCCCccHHHHh
Confidence            334444445789999999998755 44555445

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=86.32  E-value=4.4  Score=36.45  Aligned_cols=33  Identities=21%  Similarity=0.135  Sum_probs=22.2

Q ss_pred             HHHHHHHHhHhhcccchhhhhhcC-CCCccccCC
Q 023815           73 AALMAIYMTAINQLVDVKIDKINK-PDLPLASGD  105 (276)
Q Consensus        73 ~~~~~~~~~~~Nd~~D~~~D~~~~-~~Rpl~~G~  105 (276)
                      .++.+..-..+|++.|+|.|++.+ |.-|..-|+
T Consensus       169 ~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~  202 (281)
T TIGR01474       169 NILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGD  202 (281)
T ss_pred             HHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhh
Confidence            334444555689999999999854 455555564

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=85.69  E-value=4  Score=36.96  Aligned_cols=29  Identities=17%  Similarity=0.271  Sum_probs=19.3

Q ss_pred             HHHHhHhhcccchhhhhhcC-CCCccccCC
Q 023815           77 AIYMTAINQLVDVKIDKINK-PDLPLASGD  105 (276)
Q Consensus        77 ~~~~~~~Nd~~D~~~D~~~~-~~Rpl~~G~  105 (276)
                      +..-..+|++.|+|.|++.+ |.-|..-|+
T Consensus       175 ~~~~~~~~a~~D~e~D~~aGi~slpv~~G~  204 (291)
T PRK12886        175 VAGFDILYALQDLEFDRKEGLHSIPAKLGV  204 (291)
T ss_pred             HHHHHHHHHhccHHhHHHcCCcCcchhcCc
Confidence            33334578889999999754 555665555

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=85.55  E-value=2.2  Score=38.11  Aligned_cols=46  Identities=17%  Similarity=0.086  Sum_probs=32.4

Q ss_pred             HHHHHHHHccCCChHhhHhcCCcccchhhc---hHhHHHHHHHHHHHhhh
Q 023815          209 MSLAKALLKDLHDVDGDKEYGIRTFSVMLG---KERMIKELLNLFKNMDL  255 (276)
Q Consensus       209 ~~~~~~~~~~~~D~e~D~~aG~~Tl~v~lG---~~~a~~l~~~l~~~~~~  255 (276)
                      ...+....||+-|+|.|++. ++.=|..-|   .+.+.....++..++.+
T Consensus        49 ~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~is~~~a~~~~~~~~~~~~~   97 (279)
T PRK12884         49 ASGSANALNDYFDYEVDRIN-RPDRPIPSGRISRREALLLAILLFILGLI   97 (279)
T ss_pred             HHHHHHHHHhhhhHhhhhcc-CCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            34567889999999999988 666676666   45666666655555443

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=85.31  E-value=6.8  Score=35.39  Aligned_cols=43  Identities=9%  Similarity=-0.022  Sum_probs=26.9

Q ss_pred             HHHHHhHhhcccchhhhhhcCCCCccccCCCCHHHHHHHHHHHHH
Q 023815           76 MAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAM  120 (276)
Q Consensus        76 ~~~~~~~~Nd~~D~~~D~~~~~~Rpl~~G~is~~~a~~~~~~~~~  120 (276)
                      ........||.-|+|+|+.+++ |.++. ++.++.+..+...+..
T Consensus       173 ~~~~iL~~Nn~rD~e~D~~~Gk-~TL~v-~lG~~~a~~l~~~l~~  215 (285)
T TIGR02235       173 ATTLILFCSHFHQVEDDLAHGK-RSPVV-RLGTKLAAKIVPWVIS  215 (285)
T ss_pred             HHHHHHHhcCCccchhHHHcCC-cceeh-eecHHhHHHHHHHHHH
Confidence            3445667999999999999765 33332 3445555555444433

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PLN00012 chlorophyll synthetase; Provisional

Probab=85.18  E-value=7.9  Score=36.44  Aligned_cols=30  Identities=20%  Similarity=0.321  Sum_probs=20.7

Q ss_pred             HHHHHhHhhcccchhhhhhcC-CCCccccCC
Q 023815           76 MAIYMTAINQLVDVKIDKINK-PDLPLASGD  105 (276)
Q Consensus        76 ~~~~~~~~Nd~~D~~~D~~~~-~~Rpl~~G~  105 (276)
                      ...+....||+-|+|.|++.+ +.-|..-|+
T Consensus       264 ~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~  294 (375)
T PLN00012        264 AGLGIAIVNDFKSIEGDRALGLQSLPVAFGV  294 (375)
T ss_pred             HHHHHHHHhhhcchhhHHHcCCcccceeech
Confidence            444456799999999999864 444554454

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=85.08  E-value=5  Score=37.09  Aligned_cols=30  Identities=30%  Similarity=0.339  Sum_probs=19.5

Q ss_pred             HHHHHhHhhcccchhhhhhcCC-CCccccCC
Q 023815           76 MAIYMTAINQLVDVKIDKINKP-DLPLASGD  105 (276)
Q Consensus        76 ~~~~~~~~Nd~~D~~~D~~~~~-~Rpl~~G~  105 (276)
                      .......+||..|+|.|+..+. .-|+.=|+
T Consensus       192 ~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~  222 (331)
T PRK12392        192 MAIALIIMNDFKSVEGDKEGGLKSLTVMIGA  222 (331)
T ss_pred             HHHHHHHHHcccchhhHHHcCCeeeEeEEcH
Confidence            3344456899999999998653 33443343

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=84.91  E-value=7  Score=35.74  Aligned_cols=29  Identities=24%  Similarity=0.324  Sum_probs=19.7

Q ss_pred             HHHHhHhhcccchhhhhhcC-CCCccccCC
Q 023815           77 AIYMTAINQLVDVKIDKINK-PDLPLASGD  105 (276)
Q Consensus        77 ~~~~~~~Nd~~D~~~D~~~~-~~Rpl~~G~  105 (276)
                      .......||+.|+|.|++.+ +.-|..-|+
T Consensus       202 ~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~  231 (314)
T PRK07566        202 AHGIMTLNDFKSVEGDRQLGLRSLPVVFGE  231 (314)
T ss_pred             HHHHHHHHHHHHhHhHHHcCCcccceeEcH
Confidence            33446799999999999864 344444443

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=84.64  E-value=5.4  Score=35.91  Aligned_cols=44  Identities=16%  Similarity=0.137  Sum_probs=25.3

Q ss_pred             HHHHHhHhhcccchhhhhhcCCCCccccCCCCHHHHHHHHHHHHHH
Q 023815           76 MAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMM  121 (276)
Q Consensus        76 ~~~~~~~~Nd~~D~~~D~~~~~~Rpl~~G~is~~~a~~~~~~~~~~  121 (276)
                      ........||+-|+|.|+.+++ |.++. ++..+.+..+...+..+
T Consensus       180 ~~~~~~~~n~~~D~~~D~~~G~-~Tl~v-~lG~~~a~~~~~~l~~~  223 (293)
T PRK06080        180 LIGAVLLANNIRDIETDRENGK-NTLAV-RLGDKNARRLHAALLAL  223 (293)
T ss_pred             HHHHHHHhcCCCcchhHHHcCC-eeEEe-eECcHhHHHHHHHHHHH
Confidence            3444457899999999998764 33332 23344444444433333

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=84.23  E-value=5.9  Score=35.77  Aligned_cols=31  Identities=19%  Similarity=0.129  Sum_probs=21.2

Q ss_pred             HHHHHHhHhhcccchhhhhhcC-CCCccccCC
Q 023815           75 LMAIYMTAINQLVDVKIDKINK-PDLPLASGD  105 (276)
Q Consensus        75 ~~~~~~~~~Nd~~D~~~D~~~~-~~Rpl~~G~  105 (276)
                      +.+..-..+|++.|+|.|++.+ |.-|..-|.
T Consensus       170 ~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~  201 (284)
T PRK12888        170 LWIGGFDLIYACQDAEVDRRIGVRSVPARFGV  201 (284)
T ss_pred             HHHHHHHHHHHhhhHHHHHHCCCcCcchhhCc
Confidence            3444556799999999999865 444544454

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=83.46  E-value=10  Score=34.07  Aligned_cols=31  Identities=19%  Similarity=0.082  Sum_probs=20.4

Q ss_pred             HHHHHHhHhhcccchhhhhhcC-CCCccccCC
Q 023815           75 LMAIYMTAINQLVDVKIDKINK-PDLPLASGD  105 (276)
Q Consensus        75 ~~~~~~~~~Nd~~D~~~D~~~~-~~Rpl~~G~  105 (276)
                      +.+..-...|++.|+|.|++++ |.-|..-|.
T Consensus       176 ~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~  207 (285)
T PRK12847        176 FWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGN  207 (285)
T ss_pred             HHHHHHHHHHHhccHhhHHHcCCchhHHHhcc
Confidence            3344444689999999999865 344554454

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=81.20  E-value=11  Score=33.96  Aligned_cols=40  Identities=20%  Similarity=0.106  Sum_probs=24.8

Q ss_pred             HHHHhHhhcccchhhhhhcCCCCccccCCCCHHHHHHHHHHH
Q 023815           77 AIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTC  118 (276)
Q Consensus        77 ~~~~~~~Nd~~D~~~D~~~~~~Rpl~~G~is~~~a~~~~~~~  118 (276)
                      .......||.-|+|.|+.++++ .++. ++.++.+..+...+
T Consensus       177 ~~~il~~Nn~~D~~~D~~~Gk~-Tl~v-~lG~~~a~~l~~~l  216 (284)
T TIGR00751       177 ACAVLNINNLRDIPTDARAGKN-TLAV-RLGDARTRMYHQGL  216 (284)
T ss_pred             HHHHHHHcCcccchhHHHcCCE-eehh-hcchHhHHHHHHHH
Confidence            3455569999999999997653 3322 34455555444333

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=80.91  E-value=13  Score=33.92  Aligned_cols=39  Identities=21%  Similarity=0.250  Sum_probs=23.5

Q ss_pred             HHHHHhHhhcccchhhhhhcCCCCccccCCCCHHHHHHHHH
Q 023815           76 MAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITL  116 (276)
Q Consensus        76 ~~~~~~~~Nd~~D~~~D~~~~~~Rpl~~G~is~~~a~~~~~  116 (276)
                      ........||+-|+|.|+++++ |.++. ++.++.+.....
T Consensus       195 ~~~~i~~~n~~~D~e~D~~~G~-~Tlpv-~lG~~~a~~~~~  233 (306)
T TIGR02056       195 AGLGIAIVNDFKSVEGDRALGL-QSLPV-AFGIETAAWICV  233 (306)
T ss_pred             HHHHHHHHHHccChHHHHHcCC-cCcch-hcChHHHHHHHH
Confidence            3444557999999999998653 33332 333444444443

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=80.78  E-value=3.4  Score=37.57  Aligned_cols=46  Identities=20%  Similarity=0.073  Sum_probs=29.5

Q ss_pred             HHHHHHHccCCChHhhHhc----CCcccchhhchHhHHHHHHHHHHHhhh
Q 023815          210 SLAKALLKDLHDVDGDKEY----GIRTFSVMLGKERMIKELLNLFKNMDL  255 (276)
Q Consensus       210 ~~~~~~~~~~~D~e~D~~a----G~~Tl~v~lG~~~a~~l~~~l~~~~~~  255 (276)
                      ..+...+||+.|+|.|++.    .+..-.=++..+.+..++.++..++.+
T Consensus        59 ~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l~~~~l~  108 (295)
T PRK12324         59 SSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVASLA  108 (295)
T ss_pred             HHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHHHHHHHH
Confidence            4466789999999999985    222223345556676666655555443

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=80.66  E-value=11  Score=33.72  Aligned_cols=31  Identities=16%  Similarity=0.084  Sum_probs=20.6

Q ss_pred             HHHHHHhHhhcccchhhhhhcC-CCCccccCC
Q 023815           75 LMAIYMTAINQLVDVKIDKINK-PDLPLASGD  105 (276)
Q Consensus        75 ~~~~~~~~~Nd~~D~~~D~~~~-~~Rpl~~G~  105 (276)
                      +-+..-...|++.|+|.|++.+ |.-|..-|.
T Consensus       173 ~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~  204 (282)
T PRK12848        173 LWTVAYDTQYAMVDRDDDLKIGIKSTAILFGR  204 (282)
T ss_pred             HHHHHHHHHHHhccHhhHHHcCCccccHHhcc
Confidence            3344445679999999999865 455555554

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=80.27  E-value=15  Score=32.82  Aligned_cols=28  Identities=21%  Similarity=0.227  Sum_probs=18.9

Q ss_pred             HHHhHhhcccchhhhhhcCC-CCccccCC
Q 023815           78 IYMTAINQLVDVKIDKINKP-DLPLASGD  105 (276)
Q Consensus        78 ~~~~~~Nd~~D~~~D~~~~~-~Rpl~~G~  105 (276)
                      ......||+-|+|.|+++++ .-|..-|+
T Consensus       175 ~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~  203 (283)
T TIGR01476       175 HGIMTLNDFKSVEGDRQLGLRSLPVMIGV  203 (283)
T ss_pred             HHHHHHHhccchhhHHHcCCcCcceEEcH
Confidence            33457999999999998653 33443343

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=80.21  E-value=24  Score=32.20  Aligned_cols=23  Identities=9%  Similarity=0.216  Sum_probs=17.4

Q ss_pred             HHHHHHhHhhcccchhhhhhcCC
Q 023815           75 LMAIYMTAINQLVDVKIDKINKP   97 (276)
Q Consensus        75 ~~~~~~~~~Nd~~D~~~D~~~~~   97 (276)
                      +.......+||+-|+|.||+++.
T Consensus       193 ~~~~~~~l~~di~D~egD~~~Gi  215 (308)
T PRK12887        193 VFTFAIAIFKDIPDMEGDRQYQI  215 (308)
T ss_pred             HHHHHHHHHHhccchhhHHHcCC
Confidence            34445556999999999998763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	276
d1rtra_	290	Farnesyl diphosphate synthase (geranyltranstransfe	84.71

>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Isoprenyl diphosphate synthases
domain: Farnesyl diphosphate synthase (geranyltranstransferase)
species: Staphylococcus aureus [TaxId: 1280]

Probab=84.71  E-value=2.6  Score=34.60  Aligned_cols=53  Identities=8%  Similarity=0.038  Sum_probs=34.4

Q ss_pred             HHHHHHHHHhHhhcccchhhhhhcCCCCccccCCCCHHHHHHHHHHHHHHHHHH
Q 023815           72 PAALMAIYMTAINQLVDVKIDKINKPDLPLASGDFSIKTGVAITLTCAMMSLAM  125 (276)
Q Consensus        72 ~~~~~~~~~~~~Nd~~D~~~D~~~~~~Rpl~~G~is~~~a~~~~~~~~~~g~~l  125 (276)
                      +.=++|.++-+..|+.|.|.|.. +|.+|-.........+...+-.+...+.-+
T Consensus        69 avEllH~asLIHDDI~d~D~~~~-RRg~pt~~~~~g~~~Ail~Gd~l~~~a~~l  121 (290)
T d1rtra_          69 ALEMIHTYSLIHDDLPAMDNDDY-RRGKLTNHKVYGEWTAILAGDALLTKAFEL  121 (290)
T ss_dssp             HHHHHHHHHHHHHHSTTTTCCSE-ETTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcchhhhhhhhh-hhcchhhHHHhhhhHHHHcCcchhHHHHHH
Confidence            33467888888999998887765 445665555556666666555555444443