Citrus Sinensis ID: 023822

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270------
Protein Sequence
MVGSQSEREDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFSS
Secondary Structure (PSIPRED)
cEEEccccccEEEEEEcHHHcccEEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEccccccEEEEEcccccEEEEEEEccEEEEEEccccEEEEEEcccEEEEEEcccccccccEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEccccccccEEEEEEcccccEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cEEEccccccccEEEEEccccccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEccccEEEEEEcccccHcEEHEEHcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccccEEEEEEEcccccEEEEcccccccc
Coil and Loop (DISEMBL)
mvgsqseredKVSLELSEEILQSMEVGMsfrdyngrissmdfhksssylvtasddesirlYDVTAATCLKTinskkygvdlvcftshpttviysskngwdESLRLLSLHDNKYLRYFKGHHDRVVSLslcsskdcfisgsldrtVLLWDQRAEKCQGLLRvqgrpaaayddqGLVFAVAFGGYIrmfdarkyekgpfdifsvggdisdanvvkfsndGRLMLLTTMEGHIHVLDSFRgtllstynvkpvsrnstleasfspegmfvisgrvspfss
Flexible Loop (DISEMBL)
mvgsqseredkvsLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTviysskngwDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNStleasfspegmfvisgrvspfss
Low Complexity Region (SEG)
MVGSQSEREDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFSS
Disordered region (IsUnstruct)
*******************************DYN**I****F***SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV***************************
Disordered Region (DISOPRED)
MVGSQS*REDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPF**
Disordered Region (DISEMBL)
*************LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFSS
Disordered Region (DISPRO)
******EREDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVI*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVGSQSEREDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	276	2.2.26 [Sep-21-2011]
Q58E77	313	WD repeat-containing prot	N/A	no	0.923	0.814	0.434	8e-60
Q5ZMV7	313	WD repeat-containing prot	yes	no	0.923	0.814	0.434	2e-59
Q6GL39	313	WD repeat-containing prot	yes	no	0.923	0.814	0.422	7e-59
Q8BFQ4	313	WD repeat-containing prot	yes	no	0.923	0.814	0.426	2e-58
Q6UXN9	313	WD repeat-containing prot	yes	no	0.923	0.814	0.426	2e-58
Q6NV31	313	WD repeat-containing prot	yes	no	0.923	0.814	0.426	3e-58
Q640J6	313	WD repeat-containing prot	N/A	no	0.923	0.814	0.418	2e-57
O60137	357	Set1 complex component sw	yes	no	0.920	0.711	0.333	8e-33
Q9UT39	341	Uncharacterized WD repeat	no	no	0.894	0.724	0.323	1e-28
P36104	329	COMPASS component SWD2 OS	yes	no	0.855	0.717	0.328	2e-27

>sp|Q58E77|WD82B_XENLA WD repeat-containing protein 82-B OS=Xenopus laevis GN=wdr82-b PE=2 SV=1

 Score =  230 bits (587), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 112/258 (43%), Positives = 173/258 (67%), Gaps = 3/258 (1%)

Query: 14  LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN 73
           ++L++ +L+S  V   FR+ + +I+  DF  +   ++++SDD+SI LYD       +T+ 
Sbjct: 1   MKLTDNVLRSFRVAKVFRENSDKINCFDFSPTGETVISSSDDDSIVLYDCQEGKPKRTLY 60

Query: 74  SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK 133
           SKKYGVDL+ +T    TV+YSS N  D+++R LSLHDNKY+RYF GH  RVVSLS+    
Sbjct: 61  SKKYGVDLIRYTHAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHSKRVVSLSMSPVD 119

Query: 134 DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG-YIRMFDARKY 192
           D FISGSLD+T+ LWD R+  CQGL+ +QG+P  ++D +GL+FA       ++++D R +
Sbjct: 120 DTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGINSEMVKLYDLRSF 179

Query: 193 EKGPFDIFSVGGD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 251
           +KGPF  F +  D   +   +KFSNDG+L+LL+T  G + ++D+F+G ++ T+     S+
Sbjct: 180 DKGPFATFKMQYDRTCEWTALKFSNDGKLILLSTNGGFLRLVDAFKGAVMHTFGGYNNSK 239

Query: 252 NSTLEASFSPEGMFVISG 269
             TLEASF+P+  F++ G
Sbjct: 240 AVTLEASFTPDSQFIMIG 257

Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus.
Xenopus laevis (taxid: 8355)

>sp|Q5ZMV7|WDR82_CHICK WD repeat-containing protein 82 OS=Gallus gallus GN=WDR82 PE=2 SV=1

 Score =  229 bits (583), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 112/258 (43%), Positives = 173/258 (67%), Gaps = 3/258 (1%)

Query: 14  LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN 73
           ++L++ +L+S  V   FR+ + +I+  DF  +   ++++SDD+SI LYD       +T+ 
Sbjct: 1   MKLTDNVLRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLY 60

Query: 74  SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK 133
           SKKYGVDL+ +T    TV+YSS N  D+++R LSLHDNKY+RYF GH  RVV+LS+    
Sbjct: 61  SKKYGVDLIRYTHAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHTKRVVALSMSPVD 119

Query: 134 DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG-YIRMFDARKY 192
           D FISGSLD+T+ LWD R+  CQGL+ +QG+P  ++D +GL+FA       ++++D R +
Sbjct: 120 DTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSF 179

Query: 193 EKGPFDIFSVGGD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 251
           +KGPF  F +  D   +   +KFSNDG+L+L++T  G I ++D+F+G +L T+     S+
Sbjct: 180 DKGPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGGFIRLIDAFKGAVLHTFGGYNNSK 239

Query: 252 NSTLEASFSPEGMFVISG 269
             TLEASF+P+  F++ G
Sbjct: 240 AVTLEASFTPDSQFIMIG 257

Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus.

Gallus gallus (taxid: 9031)

>sp|Q6GL39|WDR82_XENTR WD repeat-containing protein 82 OS=Xenopus tropicalis GN=wdr82 PE=2 SV=1

 Score =  227 bits (578), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 109/258 (42%), Positives = 173/258 (67%), Gaps = 3/258 (1%)

Query: 14  LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN 73
           ++L++ +L+S  V   FR+ + +I+  DF  +   ++++SDD+SI LYD       +T+ 
Sbjct: 1   MKLTDNVLRSFRVAKVFRENSDKINCFDFSPTGETVISSSDDDSIVLYDCQEGKPKRTLY 60

Query: 74  SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK 133
           SKKYGVDL+ +T    TV+YSS N  D+++R LSLHDNKY+RYF GH  RVV+LS+    
Sbjct: 61  SKKYGVDLIRYTHAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVD 119

Query: 134 DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG-YIRMFDARKY 192
           D FISGSLD+T+ LWD R+  CQGL+ +QG+P  ++D +GL+FA       ++++D R +
Sbjct: 120 DTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSF 179

Query: 193 EKGPFDIFSVGGD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 251
           +KGPF  F +  D   +   +KFSNDG+L+L++T  G + ++D+F+G ++ T+     S+
Sbjct: 180 DKGPFATFKMQYDRTCEWTALKFSNDGKLILMSTNGGFLRLVDAFKGAVMHTFGGYNNSK 239

Query: 252 NSTLEASFSPEGMFVISG 269
             TLEA+F+P+  F++ G
Sbjct: 240 AVTLEATFTPDSQFIMIG 257

Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus.

Xenopus tropicalis (taxid: 8364)

>sp|Q8BFQ4|WDR82_MOUSE WD repeat-containing protein 82 OS=Mus musculus GN=Wdr82 PE=1 SV=1

 Score =  226 bits (575), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 110/258 (42%), Positives = 172/258 (66%), Gaps = 3/258 (1%)

Query: 14  LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN 73
           ++L++ +L+S  V   FR+ + +I+  DF  +   ++++SDD+SI LYD       +T+ 
Sbjct: 1   MKLTDSVLRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLY 60

Query: 74  SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK 133
           SKKYGVDL+ +T    TV+YSS N  D+++R LSLHDNKY+RYF GH  RVV+LS+    
Sbjct: 61  SKKYGVDLIRYTHAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVD 119

Query: 134 DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG-YIRMFDARKY 192
           D FISGSLD+T+ LWD R+  CQGL+ +QG+P  ++D +GL+FA       ++++D R +
Sbjct: 120 DTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSF 179

Query: 193 EKGPFDIFSVGGD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 251
           +KGPF  F +  D   +   +KFSNDG+L+L++T    I ++D+F+G ++ T+     S+
Sbjct: 180 DKGPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSK 239

Query: 252 NSTLEASFSPEGMFVISG 269
             TLEASF+P+  F++ G
Sbjct: 240 AVTLEASFTPDSQFIMIG 257

Regulatory component of the SET1 complex implicated in the tethering of this complex to transcriptional start sites of active genes. Facilitates histone H3 'Lys-4' methylation via recruitment of the SETD1A or SETD1B to the 'Ser-5' phosphorylated C-terminal domain (CTD) of RNA polymerase II large subunit (POLR2A). Component of PTW/PP1 phosphatase complex, which plays a role in the control of chromatin structure and cell cycle progression during the transition from mitosis into interphase. Possible role in telomere length maintenance and in mRNA processing.

Mus musculus (taxid: 10090)

>sp|Q6UXN9|WDR82_HUMAN WD repeat-containing protein 82 OS=Homo sapiens GN=WDR82 PE=1 SV=1

 Score =  226 bits (575), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 110/258 (42%), Positives = 172/258 (66%), Gaps = 3/258 (1%)

Query: 14  LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN 73
           ++L++ +L+S  V   FR+ + +I+  DF  +   ++++SDD+SI LYD       +T+ 
Sbjct: 1   MKLTDSVLRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLY 60

Query: 74  SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK 133
           SKKYGVDL+ +T    TV+YSS N  D+++R LSLHDNKY+RYF GH  RVV+LS+    
Sbjct: 61  SKKYGVDLIRYTHAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVD 119

Query: 134 DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG-YIRMFDARKY 192
           D FISGSLD+T+ LWD R+  CQGL+ +QG+P  ++D +GL+FA       ++++D R +
Sbjct: 120 DTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSF 179

Query: 193 EKGPFDIFSVGGD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 251
           +KGPF  F +  D   +   +KFSNDG+L+L++T    I ++D+F+G ++ T+     S+
Sbjct: 180 DKGPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSK 239

Query: 252 NSTLEASFSPEGMFVISG 269
             TLEASF+P+  F++ G
Sbjct: 240 AVTLEASFTPDSQFIMIG 257

Regulatory component of the SET1 complex implicated in the tethering of this complex to transcriptional start sites of active genes. Facilitates histone H3 'Lys-4' methylation via recruitment of the SETD1A or SETD1B to the 'Ser-5' phosphorylated C-terminal domain (CTD) of RNA polymerase II large subunit (POLR2A). Component of PTW/PP1 phosphatase complex, which plays a role in the control of chromatin structure and cell cycle progression during the transition from mitosis into interphase.

Homo sapiens (taxid: 9606)

>sp|Q6NV31|WDR82_DANRE WD repeat-containing protein 82 OS=Danio rerio GN=wdr82 PE=2 SV=1

 Score =  225 bits (573), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 110/258 (42%), Positives = 173/258 (67%), Gaps = 3/258 (1%)

Query: 14  LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN 73
           ++L++ +L+S  V   FR+ + +I+  DF  +   ++++SDD+SI LYD       +T+ 
Sbjct: 1   MKLTDSVLRSFRVAKVFRENSDKINCFDFSSNGETVISSSDDDSIVLYDCQEGKPKRTLY 60

Query: 74  SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK 133
           SKKYGVDL+ +T    TV+YSS N  D+++R LSLHDNKY+RYF GH+ RVV+LS+    
Sbjct: 61  SKKYGVDLIRYTHAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHNKRVVALSMSPVD 119

Query: 134 DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG-YIRMFDARKY 192
           D FISGSLD+T+ LWD R+  CQGL+ +QG+P  ++D +GL+FA       ++++D R +
Sbjct: 120 DTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSF 179

Query: 193 EKGPFDIFSVGGD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 251
           +KGPF  F +  +   +   +KFSNDG+L+L++T  G + VLD+F+G +L ++     S+
Sbjct: 180 DKGPFATFKLQYERTCEWTGLKFSNDGKLILVSTNGGTLRVLDAFKGAVLHSFGGYNNSK 239

Query: 252 NSTLEASFSPEGMFVISG 269
              LEASF+P+  F++ G
Sbjct: 240 GVILEASFTPDSQFIMIG 257

Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus.

Danio rerio (taxid: 7955)

>sp|Q640J6|WD82A_XENLA WD repeat-containing protein 82-A OS=Xenopus laevis GN=wdr82-a PE=2 SV=1

 Score =  222 bits (566), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 108/258 (41%), Positives = 171/258 (66%), Gaps = 3/258 (1%)

Query: 14  LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN 73
           ++L++ +L+S  V   FR+ + +I+  DF  +   ++++SDD+SI LYD       +T+ 
Sbjct: 1   MKLTDGVLRSFRVAKVFRENSDKINCFDFSPTGETVISSSDDDSIVLYDCQEGKPKRTLY 60

Query: 74  SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK 133
           SKKYGVDL+ +T    TV+YSS N  D+++R LSLHDNKY+RYF GH  RVV+LS+    
Sbjct: 61  SKKYGVDLIRYTHAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVD 119

Query: 134 DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG-YIRMFDARKY 192
           D FIS SLD+T+ LWD R+  CQGL+ +QG+P  ++D +GL+FA       ++++D R +
Sbjct: 120 DTFISASLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSF 179

Query: 193 EKGPFDIFSVGGD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 251
           +KGPF  F +  D   +   +KFS DG+L+L++T  G + ++D+F+G ++ T+     S+
Sbjct: 180 DKGPFATFKMQYDRTCEWTSLKFSQDGKLILMSTNGGFLRLVDAFKGAVMHTFGGYNNSK 239

Query: 252 NSTLEASFSPEGMFVISG 269
             TLEASF+P+  F++ G
Sbjct: 240 AVTLEASFTPDSQFIMIG 257

Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus.

Xenopus laevis (taxid: 8355)

>sp|O60137|SWD2_SCHPO Set1 complex component swd2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=swd2 PE=3 SV=1

 Score =  140 bits (354), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 91/273 (33%), Positives = 148/273 (54%), Gaps = 19/273 (6%)

Query: 12  VSLELSEEILQSMEVGMSFRDYN--GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL 69
            ++ ++ ++L SM+     ++ N  G I+S+ F  S    + +  D++++LY+  +   +
Sbjct: 2   TTVSITFDLLSSMQPRKWLKNQNFVGEITSLSFDDSGELCLASCTDDTLQLYNCISGKFV 61

Query: 70  KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSL 129
           K++ SKKYG  L  FT H  ++I++S    D ++R L +  N+YLRYF GH   V S+ +
Sbjct: 62  KSLASKKYGAHLGRFTHHSNSLIHASTKE-DNTVRYLDVVTNRYLRYFPGHKQTVTSIDV 120

Query: 130 CSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFA-VAFGGY----- 183
             + + F+S SLD T+ LWD R+  CQGLL V     AA+D  GL+FA V+   Y     
Sbjct: 121 SPADETFLSASLDNTIRLWDLRSPNCQGLLNVSSPVVAAFDATGLIFASVSERKYKISLY 180

Query: 184 -IRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL- 241
            I+ FDAR ++  P         I++   V+FS DG+ +LLTT     +V+D++ G+ L 
Sbjct: 181 NIKSFDARPFQDIPLTFLPPHVRIAN---VEFSTDGKYLLLTTGNDFHYVIDAYSGSELL 237

Query: 242 ---STYNVKPVSRNSTLEAS--FSPEGMFVISG 269
              S  + K    N T  AS   SP+  F+ + 
Sbjct: 238 RVPSKVSTKTQDGNLTYYASACMSPDSKFLFTS 270

The Set1 complex specifically methylates 'Lys-4' of histone H3.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9UT39|YIQ4_SCHPO Uncharacterized WD repeat-containing protein C824.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC824.04 PE=4 SV=1

 Score =  127 bits (319), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/269 (32%), Positives = 142/269 (52%), Gaps = 22/269 (8%)

Query: 20  ILQSMEVGMSFRD--YNGRISSMDFHKSSSYLVTA-SDDESIRLYDVTAATCLKTINSKK 76
           IL S++   SFRD      I+S+D+  S  Y+ T  S D+++++YD      + TI   +
Sbjct: 5   ILSSLKPAQSFRDNSLGSFINSIDYSDSGEYVATTCSADDTVQIYDALDPKQVHTITCFE 64

Query: 77  YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF 136
            G+++  FT H   ++ S+  G ++ ++ +S++DNK + YF GH D V S+ +   +D F
Sbjct: 65  TGIEVARFTHHDHNLLLSTTKG-NKDIQYVSIYDNKRISYFSGHTDIVSSIEVSPIEDQF 123

Query: 137 ISGSLDRTVLLWD-QRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMF--DARKYE 193
           +S + D+T+ LW   ++ +C G L +      AYD  GLVFAVA     R+F  D R Y 
Sbjct: 124 VSTANDKTLKLWKMNQSSRCLGNLDLPSLGIPAYDPTGLVFAVACHSLSRIFLYDVRNYG 183

Query: 194 KGPFDIFSVGGD-----------ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS 242
             PF  F++              + +   ++FSNDG+ +LL+T     ++LD+F G +LS
Sbjct: 184 SDPFSTFTIDDSRYLSRFSFPPMMPEWKHMEFSNDGKCILLSTRANVHYILDAFSGDVLS 243

Query: 243 ---TYNVKPVSRN-STLEASFSPEGMFVI 267
               +   P S N      +F P+G FVI
Sbjct: 244 RLEDFQELPFSNNFHGGSTTFVPQGNFVI 272

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P36104|SWD2_YEAST COMPASS component SWD2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SWD2 PE=1 SV=1

 Score =  122 bits (307), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/250 (32%), Positives = 130/250 (52%), Gaps = 14/250 (5%)

Query: 35  GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYS 94
           G ++S++F  +  +L+T+S +++++LY  T    L TI SKKYG     FT      IYS
Sbjct: 28  GPVTSLNFDDNGQFLLTSSSNDTMQLYSATNCKFLDTIASKKYGCHSAIFTHAQNECIYS 87

Query: 95  SK-NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE 153
           S    +D  ++ L+L  N+YLRYF GH   V  L +    D F+S S D +V LWD +  
Sbjct: 88  STMKNFD--IKYLNLETNQYLRYFSGHGALVNDLKMNPVNDTFLSSSYDESVRLWDLKIS 145

Query: 154 KCQGLLRVQGRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDIFSVG-GDISDAN 210
           K Q ++        AYD  GLVFA+       I +++ +K ++GPF I  +     S  N
Sbjct: 146 KPQVIIPSLVPNCIAYDPSGLVFALGNPENFEIGLYNLKKIQEGPFLIIKINDATFSQWN 205

Query: 211 VVKFSNDGRLMLLTTMEGHIHVLDSFRG-TLLSTYNVKPVSRNSTLE---ASFSPEGMFV 266
            ++FSN+G+ +L+ +  G   + D+F G  L      +       L+   A F+P+G FV
Sbjct: 206 KLEFSNNGKYLLVGSSIGKHLIFDAFTGQQLFELIGTRAFPMREFLDSGSACFTPDGEFV 265

Query: 267 IS----GRVS 272
           +     GR++
Sbjct: 266 LGTDYDGRIA 275

Involved in mediating RNA polymerase II termination. Component of the cleavage and polyadenylation factor (CPF) complex, which plays a key role in polyadenylation-dependent pre-mRNA 3'-end formation and cooperates with cleavage factors including the CFIA complex and NAB4/CFIB. Component of the APT complex, which may be involved in polyadenylation-independent transcript 3'-end formation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
449434162	332	PREDICTED: WD repeat-containing protein	0.974	0.810	0.910	1e-144
297735019	522	unnamed protein product [Vitis vinifera]	0.960	0.507	0.916	1e-144
449491362	332	PREDICTED: WD repeat-containing protein	0.974	0.810	0.907	1e-144
356563997	334	PREDICTED: WD repeat-containing protein	0.974	0.805	0.914	1e-143
225431149	334	PREDICTED: WD repeat-containing protein	0.960	0.793	0.916	1e-143
356554143	334	PREDICTED: WD repeat-containing protein	0.974	0.805	0.910	1e-142
255579793	332	COMPASS component SWD2, putative [Ricinu	0.974	0.810	0.895	1e-142
147857700	328	hypothetical protein VITISV_020464 [Viti	0.956	0.804	0.912	1e-142
217074372	334	unknown [Medicago truncatula] gi|3885018	0.971	0.802	0.876	1e-136
224133718	307	predicted protein [Populus trichocarpa]	0.923	0.830	0.913	1e-136

>gi|449434162|ref|XP_004134865.1| PREDICTED: WD repeat-containing protein 82-B-like [Cucumis sativus]

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 245/269 (91%), Positives = 262/269 (97%)

Query: 1   MVGSQSEREDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRL 60
           M GSQSERE+KVSLEL+EEILQSMEVGM+FRDYNGRISSMDFHK+SSYLVTASDDESIRL
Sbjct: 1   MGGSQSEREEKVSLELTEEILQSMEVGMTFRDYNGRISSMDFHKTSSYLVTASDDESIRL 60

Query: 61  YDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH 120
           YDV +ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL+DNKYLRYF+GH
Sbjct: 61  YDVASATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLNDNKYLRYFRGH 120

Query: 121 HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF 180
           HDRVVSLSLC+ K+CFISGSLDRTVLLWDQRAEKCQGLLRVQG+PA AYD+QG+VFA+AF
Sbjct: 121 HDRVVSLSLCARKECFISGSLDRTVLLWDQRAEKCQGLLRVQGKPATAYDEQGVVFAIAF 180

Query: 181 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL 240
           GGYIRMFDARKYEKGPFDIFSVG D+SDAN+VKFSNDGRLMLLTT +GHIHVLDSFRGTL
Sbjct: 181 GGYIRMFDARKYEKGPFDIFSVGEDLSDANIVKFSNDGRLMLLTTSDGHIHVLDSFRGTL 240

Query: 241 LSTYNVKPVSRNSTLEASFSPEGMFVISG 269
           LSTYNVKP+SRN TLEASFSPEGMFVISG
Sbjct: 241 LSTYNVKPISRNLTLEASFSPEGMFVISG 269

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735019|emb|CBI17381.3| unnamed protein product [Vitis vinifera]

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 243/265 (91%), Positives = 256/265 (96%)

Query: 5   QSEREDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVT 64
           QSEREDKV+LEL+EEI QSMEVGM+FRDY+GRISSMDFH++SSYLVTASDDESIRLYDV 
Sbjct: 195 QSEREDKVALELTEEIFQSMEVGMAFRDYSGRISSMDFHRTSSYLVTASDDESIRLYDVA 254

Query: 65  AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRV 124
             TCLKTINSKKYGVDLVCFTS PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRV
Sbjct: 255 TGTCLKTINSKKYGVDLVCFTSDPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRV 314

Query: 125 VSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYI 184
           VSLSLCS K+CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA AYDDQGLVFA+AFGGY+
Sbjct: 315 VSLSLCSRKECFISGSLDRTVLLWDQRAEKCQGLLRVQGRPATAYDDQGLVFAIAFGGYV 374

Query: 185 RMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY 244
           R+FDARKY+KGPF+IFSVGGDISDANVVKFSNDGRLMLLTTM+GHIHVLDSFRGTLLSTY
Sbjct: 375 RLFDARKYDKGPFEIFSVGGDISDANVVKFSNDGRLMLLTTMDGHIHVLDSFRGTLLSTY 434

Query: 245 NVKPVSRNSTLEASFSPEGMFVISG 269
           NVKPVS  STLEASFSPEGMFVISG
Sbjct: 435 NVKPVSSTSTLEASFSPEGMFVISG 459

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449491362|ref|XP_004158872.1| PREDICTED: WD repeat-containing protein 82-B-like [Cucumis sativus]

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 244/269 (90%), Positives = 262/269 (97%)

Query: 1   MVGSQSEREDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRL 60
           M GSQSERE+KVSLEL+EEILQSMEVGM+FRDYNGRISSMDFH++SSYLVTASDDESIRL
Sbjct: 1   MGGSQSEREEKVSLELTEEILQSMEVGMTFRDYNGRISSMDFHRTSSYLVTASDDESIRL 60

Query: 61  YDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH 120
           YDV +ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL+DNKYLRYF+GH
Sbjct: 61  YDVASATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLNDNKYLRYFRGH 120

Query: 121 HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF 180
           HDRVVSLSLC+ K+CFISGSLDRTVLLWDQRAEKCQGLLRVQG+PA AYD+QG+VFA+AF
Sbjct: 121 HDRVVSLSLCARKECFISGSLDRTVLLWDQRAEKCQGLLRVQGKPATAYDEQGVVFAIAF 180

Query: 181 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL 240
           GGYIRMFDARKYEKGPFDIFSVG D+SDAN+VKFSNDGRLMLLTT +GHIHVLDSFRGTL
Sbjct: 181 GGYIRMFDARKYEKGPFDIFSVGEDLSDANIVKFSNDGRLMLLTTSDGHIHVLDSFRGTL 240

Query: 241 LSTYNVKPVSRNSTLEASFSPEGMFVISG 269
           LSTYNVKP+SRN TLEASFSPEGMFVISG
Sbjct: 241 LSTYNVKPISRNLTLEASFSPEGMFVISG 269

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563997|ref|XP_003550243.1| PREDICTED: WD repeat-containing protein 82-B-like [Glycine max]

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 246/269 (91%), Positives = 258/269 (95%)

Query: 1   MVGSQSEREDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRL 60
           M G+Q ERE+KVSLELSEEILQSMEVGMSF+DYNGRISS+DFH++SSYLVTASDDESIRL
Sbjct: 1   MGGTQVEREEKVSLELSEEILQSMEVGMSFKDYNGRISSLDFHRASSYLVTASDDESIRL 60

Query: 61  YDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH 120
           YDVT  TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH
Sbjct: 61  YDVTGGTCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH 120

Query: 121 HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF 180
           HDRVVSLSLCS KDCFISGSLDRTVLLWDQRAEKCQGLL VQGRPA +YDD GLVFA+AF
Sbjct: 121 HDRVVSLSLCSRKDCFISGSLDRTVLLWDQRAEKCQGLLHVQGRPAISYDDPGLVFAIAF 180

Query: 181 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL 240
           GGYIRMFDARKYEKGPF+IFSVGGDISDANVVKFSNDGRLMLLTT +GHIHVLD+FRGTL
Sbjct: 181 GGYIRMFDARKYEKGPFEIFSVGGDISDANVVKFSNDGRLMLLTTADGHIHVLDTFRGTL 240

Query: 241 LSTYNVKPVSRNSTLEASFSPEGMFVISG 269
           LSTYNV PVS NSTLEASFSPEGMF+ISG
Sbjct: 241 LSTYNVTPVSCNSTLEASFSPEGMFIISG 269

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431149|ref|XP_002268226.1| PREDICTED: WD repeat-containing protein 82-B-like [Vitis vinifera]

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 243/265 (91%), Positives = 256/265 (96%)

Query: 5   QSEREDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVT 64
           QSEREDKV+LEL+EEI QSMEVGM+FRDY+GRISSMDFH++SSYLVTASDDESIRLYDV 
Sbjct: 7   QSEREDKVALELTEEIFQSMEVGMAFRDYSGRISSMDFHRTSSYLVTASDDESIRLYDVA 66

Query: 65  AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRV 124
             TCLKTINSKKYGVDLVCFTS PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRV
Sbjct: 67  TGTCLKTINSKKYGVDLVCFTSDPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRV 126

Query: 125 VSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYI 184
           VSLSLCS K+CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA AYDDQGLVFA+AFGGY+
Sbjct: 127 VSLSLCSRKECFISGSLDRTVLLWDQRAEKCQGLLRVQGRPATAYDDQGLVFAIAFGGYV 186

Query: 185 RMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY 244
           R+FDARKY+KGPF+IFSVGGDISDANVVKFSNDGRLMLLTTM+GHIHVLDSFRGTLLSTY
Sbjct: 187 RLFDARKYDKGPFEIFSVGGDISDANVVKFSNDGRLMLLTTMDGHIHVLDSFRGTLLSTY 246

Query: 245 NVKPVSRNSTLEASFSPEGMFVISG 269
           NVKPVS  STLEASFSPEGMFVISG
Sbjct: 247 NVKPVSSTSTLEASFSPEGMFVISG 271

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554143|ref|XP_003545408.1| PREDICTED: WD repeat-containing protein 82-B-like [Glycine max]

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 245/269 (91%), Positives = 258/269 (95%)

Query: 1   MVGSQSEREDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRL 60
           M G+Q ERE+KVSLEL EEILQSMEVGMSF+DYNGRISS+DFH++S+YLVTASDDESIRL
Sbjct: 1   MGGTQVEREEKVSLELCEEILQSMEVGMSFKDYNGRISSLDFHRASNYLVTASDDESIRL 60

Query: 61  YDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH 120
           YDVT+ TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH
Sbjct: 61  YDVTSGTCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH 120

Query: 121 HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF 180
           HDRVVSLSLCS KDCFISGSLDRTVLLWDQRAEKCQGLL VQGRPA +YDDQGLVFA+AF
Sbjct: 121 HDRVVSLSLCSRKDCFISGSLDRTVLLWDQRAEKCQGLLHVQGRPAISYDDQGLVFAIAF 180

Query: 181 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL 240
           GGYIRMFDARKYEKGPF+IFSVGGDISDANVVKFSNDGRLMLLTT +GHIHVLDSFRGTL
Sbjct: 181 GGYIRMFDARKYEKGPFEIFSVGGDISDANVVKFSNDGRLMLLTTADGHIHVLDSFRGTL 240

Query: 241 LSTYNVKPVSRNSTLEASFSPEGMFVISG 269
           LSTY V P+S NSTLEASFSPEGMFVISG
Sbjct: 241 LSTYIVTPISCNSTLEASFSPEGMFVISG 269

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579793|ref|XP_002530734.1| COMPASS component SWD2, putative [Ricinus communis] gi|223529698|gb|EEF31640.1| COMPASS component SWD2, putative [Ricinus communis]

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 241/269 (89%), Positives = 259/269 (96%)

Query: 1   MVGSQSEREDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRL 60
           MVG Q ERE+KVSLEL+EEILQSME+GM FRDYNGRISSMDFHK+SSYLVTASDDESIRL
Sbjct: 1   MVGVQPEREEKVSLELTEEILQSMEIGMVFRDYNGRISSMDFHKTSSYLVTASDDESIRL 60

Query: 61  YDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH 120
           YDV++A CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL+DNKYLRYFKGH
Sbjct: 61  YDVSSAACLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLNDNKYLRYFKGH 120

Query: 121 HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF 180
           HDRVVSLSLC+ K+CFISGSLDRTVLLWDQRAEKCQGLL VQGRPA AYDDQGLVF +AF
Sbjct: 121 HDRVVSLSLCARKECFISGSLDRTVLLWDQRAEKCQGLLHVQGRPATAYDDQGLVFTIAF 180

Query: 181 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL 240
           GG+IRMFD+RKYEKGPF+IFSVGGD+SDA+VVKFSNDGRLMLLTT++GHIHVLDSFRGTL
Sbjct: 181 GGFIRMFDSRKYEKGPFEIFSVGGDVSDAHVVKFSNDGRLMLLTTVDGHIHVLDSFRGTL 240

Query: 241 LSTYNVKPVSRNSTLEASFSPEGMFVISG 269
           LSTYNVKPV  NSTLEASFSPEGMFV+SG
Sbjct: 241 LSTYNVKPVLTNSTLEASFSPEGMFVVSG 269

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147857700|emb|CAN80813.1| hypothetical protein VITISV_020464 [Vitis vinifera]

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 241/264 (91%), Positives = 255/264 (96%)

Query: 6   SEREDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA 65
           +EREDKV+LEL+EEI QSMEVGM+FRDY+GRISSMDFH++SSYLVTASDDESIRLYDV  
Sbjct: 2   AEREDKVALELTEEIFQSMEVGMAFRDYSGRISSMDFHRTSSYLVTASDDESIRLYDVAT 61

Query: 66  ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV 125
            TCLKTINSKKYGVDLVCFTS PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV
Sbjct: 62  GTCLKTINSKKYGVDLVCFTSDPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV 121

Query: 126 SLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIR 185
           SLSLCS K+CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA AYDDQGLVFA+AFGGY+R
Sbjct: 122 SLSLCSRKECFISGSLDRTVLLWDQRAEKCQGLLRVQGRPATAYDDQGLVFAIAFGGYVR 181

Query: 186 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN 245
           +FDARKY+KGPF+IFSVGGDISDANVVKFSNDGRLMLLTTM+GHIHVLDSFRGTLLSTYN
Sbjct: 182 LFDARKYDKGPFEIFSVGGDISDANVVKFSNDGRLMLLTTMDGHIHVLDSFRGTLLSTYN 241

Query: 246 VKPVSRNSTLEASFSPEGMFVISG 269
           VKPVS  STLEASFSPEGMFVISG
Sbjct: 242 VKPVSSTSTLEASFSPEGMFVISG 265

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074372|gb|ACJ85546.1| unknown [Medicago truncatula] gi|388501886|gb|AFK39009.1| unknown [Medicago truncatula]

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 235/268 (87%), Positives = 251/268 (93%)

Query: 1   MVGSQSEREDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRL 60
           M G+  E+E+KVSL+LSEEIL SMEVGMSF+DYNGRISSMDFH++SSYLVTASDDESIRL
Sbjct: 1   MGGTPGEKEEKVSLDLSEEILLSMEVGMSFKDYNGRISSMDFHRASSYLVTASDDESIRL 60

Query: 61  YDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH 120
           YDV A T LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH
Sbjct: 61  YDVAAGTSLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH 120

Query: 121 HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF 180
           HDRVVSLSLC  KDCFISGSLDRTVLLWDQRAEKCQGLL VQGRPA +YDDQGLVFA+AF
Sbjct: 121 HDRVVSLSLCPRKDCFISGSLDRTVLLWDQRAEKCQGLLHVQGRPAISYDDQGLVFAIAF 180

Query: 181 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL 240
           GGYIRMFDAR YEKGPF++FSVGGD+SDANVVKFSNDGRL+L+TT +GHIHVLDSFRGTL
Sbjct: 181 GGYIRMFDARMYEKGPFELFSVGGDVSDANVVKFSNDGRLLLVTTTDGHIHVLDSFRGTL 240

Query: 241 LSTYNVKPVSRNSTLEASFSPEGMFVIS 268
           L  YNV PVS NSTLEASFSP+GMFVIS
Sbjct: 241 LFAYNVTPVSCNSTLEASFSPDGMFVIS 268

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133718|ref|XP_002327663.1| predicted protein [Populus trichocarpa] gi|222836748|gb|EEE75141.1| predicted protein [Populus trichocarpa]

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 233/255 (91%), Positives = 244/255 (95%)

Query: 15  ELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS 74
           EL+EEILQSME GM FRDYNGRISSMDFHK+SSYLVTASDDESIRLYDV  A CLK INS
Sbjct: 1   ELTEEILQSMETGMVFRDYNGRISSMDFHKTSSYLVTASDDESIRLYDVAGAACLKAINS 60

Query: 75  KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD 134
           KKYGVDLVCFTS PTTV+YSSKNGWDESLRLLSL+DNKYLRYFKGHHDRVVSLSLCS K+
Sbjct: 61  KKYGVDLVCFTSDPTTVLYSSKNGWDESLRLLSLNDNKYLRYFKGHHDRVVSLSLCSRKE 120

Query: 135 CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEK 194
           CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQG+VFA+AFGGYIRMFD+RKYEK
Sbjct: 121 CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGIVFAIAFGGYIRMFDSRKYEK 180

Query: 195 GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNST 254
           GPFDIFSVGGD+SDAN VKFSNDGRLMLLTTM+GHIHVLDSFRGTLLSTYNVKPVS NST
Sbjct: 181 GPFDIFSVGGDVSDANAVKFSNDGRLMLLTTMDGHIHVLDSFRGTLLSTYNVKPVSINST 240

Query: 255 LEASFSPEGMFVISG 269
           LEASFSPEG FV+SG
Sbjct: 241 LEASFSPEGKFVVSG 255

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
TAIR|locus:2154996	331	AT5G66240 "AT5G66240" [Arabido	0.956	0.797	0.859	5.7e-123
TAIR|locus:2222612	330	AT5G14530 "AT5G14530" [Arabido	0.920	0.769	0.509	1e-68
DICTYBASE|DDB_G0278945	319	DDB_G0278945 "WD repeat-contai	0.938	0.811	0.484	7.6e-64
UNIPROTKB|Q5ZMV7	313	WDR82 "WD repeat-containing pr	0.923	0.814	0.434	1.2e-56
UNIPROTKB|F1MG94	602	WDR82 "Uncharacterized protein	0.923	0.423	0.426	5.3e-56
UNIPROTKB|E2RGF2	313	WDR82 "Uncharacterized protein	0.923	0.814	0.426	5.3e-56
UNIPROTKB|Q6UXN9	313	WDR82 "WD repeat-containing pr	0.923	0.814	0.426	5.3e-56
UNIPROTKB|F2Z5U3	313	WDR82 "Uncharacterized protein	0.923	0.814	0.426	5.3e-56
MGI|MGI:1924555	313	Wdr82 "WD repeat domain contai	0.923	0.814	0.426	5.3e-56
ZFIN|ZDB-GENE-030131-333	600	wdr82 "WD repeat domain contai	0.923	0.425	0.426	6.8e-56

TAIR|locus:2154996 AT5G66240 "AT5G66240" [Arabidopsis thaliana (taxid:3702)]

 Score = 1209 (430.6 bits), Expect = 5.7e-123, P = 5.7e-123
 Identities = 227/264 (85%), Positives = 251/264 (95%)

Query:     6 SEREDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA 65
             +ERED+VSLELSEEI+QSME G  FRDYN RISS+DFHK+S+ +VTASDD+SIRLYDV +
Sbjct:     5 TEREDRVSLELSEEIIQSMEPGAVFRDYNCRISSIDFHKTSTCMVTASDDDSIRLYDVAS 64

Query:    66 ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV 125
             ATCLKTINSKKYGVDLVCFTSHPTTVIYSS+NGWD+SLRLLSLHDNKYLRYFKGHHDRVV
Sbjct:    65 ATCLKTINSKKYGVDLVCFTSHPTTVIYSSRNGWDDSLRLLSLHDNKYLRYFKGHHDRVV 124

Query:   126 SLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIR 185
             SLSLCS  +CFISGSLDRTVLLWDQR EKCQGLLRVQGRPAAAYDDQGL+FA+AFGGYIR
Sbjct:   125 SLSLCSGGECFISGSLDRTVLLWDQRVEKCQGLLRVQGRPAAAYDDQGLIFAIAFGGYIR 184

Query:   186 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN 245
             MFDAR YEKGPF+IFSVGGD+S+ANVVKFSNDGRLMLLTTM+G IHVLDSFRGTLLST++
Sbjct:   185 MFDARMYEKGPFEIFSVGGDLSEANVVKFSNDGRLMLLTTMDGFIHVLDSFRGTLLSTFS 244

Query:   246 VKPVSRNSTLEASFSPEGMFVISG 269
             VKPV+  STL+A+FSPEGMFV+SG
Sbjct:   245 VKPVAGESTLDAAFSPEGMFVVSG 268

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2222612 AT5G14530 "AT5G14530" [Arabidopsis thaliana (taxid:3702)]

 Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
 Identities = 132/259 (50%), Positives = 189/259 (72%)

Query:    15 ELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS 74
             EL + +++ M +G  F D+ G+I S+ FH++   LVT+S+D+S+RL+D+  A  LK    
Sbjct:     5 ELDDGLVRRMAMGAVFSDFGGKIHSVGFHRTDDLLVTSSEDDSLRLFDIANAKQLKITYH 64

Query:    75 KKYGVDLVCFTSHPTTVIYSSKNGWD---ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS 131
             KK+G D VCFT HP+++I SS+   +   ESLR LS++DN+ LRYFKGH DRVVSL +  
Sbjct:    65 KKHGTDRVCFTHHPSSLICSSRYNLESTGESLRYLSMYDNRILRYFKGHKDRVVSLCMSP 124

Query:   132 SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF-GGYIRMFDAR 190
               D F+SGSLDR+V LWD R   CQG+L ++GRPA AYD QGLVFA+A  GG +++FD+R
Sbjct:   125 INDSFMSGSLDRSVRLWDLRVNACQGILHLRGRPAVAYDQQGLVFAIAMEGGAVKLFDSR 184

Query:   191 KYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS 250
              Y+KGPFD F VGGD ++ N +KFSNDG+ MLLTT   +I+VLD++RG     ++++P S
Sbjct:   185 CYDKGPFDTFLVGGDTAEVNDIKFSNDGKSMLLTTTNNNIYVLDAYRGEKKCGFSLEP-S 243

Query:   251 RNSTLEASFSPEGMFVISG 269
             + + +EA+F+P+G +V+SG
Sbjct:   244 QGTPIEATFTPDGKYVLSG 262

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0048573 "photoperiodism, flowering" evidence=RCA

DICTYBASE|DDB_G0278945 DDB_G0278945 "WD repeat-containing protein 82" [Dictyostelium discoideum (taxid:44689)]

 Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
 Identities = 127/262 (48%), Positives = 177/262 (67%)

Query:    11 KVSLELSEEILQSMEVGMSFRDYNGR-ISSMDFHKSSSYLVTASDDESIRLYDVTAATCL 69
             K +L L++ ++Q+M +G   +D N   I+SMDF+K  S L+TASDDESI LY++      
Sbjct:     2 KSTLRLTDNVVQNMGIGKLHKDDNSSVINSMDFNKDGSLLITASDDESIHLYNIDTGELQ 61

Query:    70 KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSL 129
             KT+NSKKYGVDL+ FT +  ++I +SKN WDESLR LSLHDNKYL+YFKGH ++VVS+S+
Sbjct:    62 KTLNSKKYGVDLIKFTHNNNSIICASKNSWDESLRYLSLHDNKYLKYFKGHRNKVVSISM 121

Query:   130 CSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFG-GYIRMFD 188
                 D F+SGSLD T+ +WD R   CQGLLR  GRPA ++D QG++FA A     I+++D
Sbjct:   122 SPINDMFLSGSLDDTIRMWDLRTNVCQGLLRRNGRPAVSFDPQGIIFATAVSVNTIKLYD 181

Query:   189 ARKYEKGPFDIFSVGGDIS-DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK 247
              R Y+KGPF  FS+   I  +   +KF+ DG+ +LL+T    I ++DSF G +   Y   
Sbjct:   182 LRNYDKGPFSSFSIDHPIPVEWTSMKFTADGKYILLSTKTNIIFLIDSFTGEVKQRYTSF 241

Query:   248 PVSRNSTLEASFSPEGMFVISG 269
                  S +E+SFSP+  +V+SG
Sbjct:   242 KNDNGSVIESSFSPDAQYVLSG 263

GO:0030587 "sorocarp development" evidence=IMP

UNIPROTKB|Q5ZMV7 WDR82 "WD repeat-containing protein 82" [Gallus gallus (taxid:9031)]

 Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
 Identities = 112/258 (43%), Positives = 174/258 (67%)

Query:    14 LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN 73
             ++L++ +L+S  V   FR+ + +I+  DF  +   ++++SDD+SI LYD       +T+ 
Sbjct:     1 MKLTDNVLRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLY 60

Query:    74 SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK 133
             SKKYGVDL+ +T    TV+YSS N  D+++R LSLHDNKY+RYF GH  RVV+LS+    
Sbjct:    61 SKKYGVDLIRYTHAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHTKRVVALSMSPVD 119

Query:   134 DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG-YIRMFDARKY 192
             D FISGSLD+T+ LWD R+  CQGL+ +QG+P  ++D +GL+FA       ++++D R +
Sbjct:   120 DTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSF 179

Query:   193 EKGPFDIFSVGGDIS-DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 251
             +KGPF  F +  D + +   +KFSNDG+L+L++T  G I ++D+F+G +L T+     S+
Sbjct:   180 DKGPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGGFIRLIDAFKGAVLHTFGGYNNSK 239

Query:   252 NSTLEASFSPEGMFVISG 269
               TLEASF+P+  F++ G
Sbjct:   240 AVTLEASFTPDSQFIMIG 257

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1MG94 WDR82 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 110/258 (42%), Positives = 173/258 (67%)

Query:    14 LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN 73
             ++L++ +L+S  V   FR+ + +I+  DF  +   ++++SDD+SI LYD       +T+ 
Sbjct:     1 MKLTDSVLRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLY 60

Query:    74 SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK 133
             SKKYGVDL+ +T    TV+YSS N  D+++R LSLHDNKY+RYF GH  RVV+LS+    
Sbjct:    61 SKKYGVDLIRYTHAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVD 119

Query:   134 DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG-YIRMFDARKY 192
             D FISGSLD+T+ LWD R+  CQGL+ +QG+P  ++D +GL+FA       ++++D R +
Sbjct:   120 DTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSF 179

Query:   193 EKGPFDIFSVGGDIS-DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 251
             +KGPF  F +  D + +   +KFSNDG+L+L++T    I ++D+F+G ++ T+     S+
Sbjct:   180 DKGPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSK 239

Query:   252 NSTLEASFSPEGMFVISG 269
               TLEASF+P+  F++ G
Sbjct:   240 AVTLEASFTPDSQFIMIG 257

GO:0072357 "PTW/PP1 phosphatase complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0000785 "chromatin" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|E2RGF2 WDR82 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 110/258 (42%), Positives = 173/258 (67%)

Query:    14 LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN 73
             ++L++ +L+S  V   FR+ + +I+  DF  +   ++++SDD+SI LYD       +T+ 
Sbjct:     1 MKLTDSVLRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLY 60

Query:    74 SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK 133
             SKKYGVDL+ +T    TV+YSS N  D+++R LSLHDNKY+RYF GH  RVV+LS+    
Sbjct:    61 SKKYGVDLIRYTHAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVD 119

Query:   134 DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG-YIRMFDARKY 192
             D FISGSLD+T+ LWD R+  CQGL+ +QG+P  ++D +GL+FA       ++++D R +
Sbjct:   120 DTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSF 179

Query:   193 EKGPFDIFSVGGDIS-DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 251
             +KGPF  F +  D + +   +KFSNDG+L+L++T    I ++D+F+G ++ T+     S+
Sbjct:   180 DKGPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSK 239

Query:   252 NSTLEASFSPEGMFVISG 269
               TLEASF+P+  F++ G
Sbjct:   240 AVTLEASFTPDSQFIMIG 257

GO:0072357 "PTW/PP1 phosphatase complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0000785 "chromatin" evidence=IEA

UNIPROTKB|Q6UXN9 WDR82 "WD repeat-containing protein 82" [Homo sapiens (taxid:9606)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 110/258 (42%), Positives = 173/258 (67%)

Query:    14 LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN 73
             ++L++ +L+S  V   FR+ + +I+  DF  +   ++++SDD+SI LYD       +T+ 
Sbjct:     1 MKLTDSVLRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLY 60

Query:    74 SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK 133
             SKKYGVDL+ +T    TV+YSS N  D+++R LSLHDNKY+RYF GH  RVV+LS+    
Sbjct:    61 SKKYGVDLIRYTHAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVD 119

Query:   134 DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG-YIRMFDARKY 192
             D FISGSLD+T+ LWD R+  CQGL+ +QG+P  ++D +GL+FA       ++++D R +
Sbjct:   120 DTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSF 179

Query:   193 EKGPFDIFSVGGDIS-DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 251
             +KGPF  F +  D + +   +KFSNDG+L+L++T    I ++D+F+G ++ T+     S+
Sbjct:   180 DKGPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSK 239

Query:   252 NSTLEASFSPEGMFVISG 269
               TLEASF+P+  F++ G
Sbjct:   240 AVTLEASFTPDSQFIMIG 257

GO:0003682 "chromatin binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0048188 "Set1C/COMPASS complex" evidence=IDA

GO:0000785 "chromatin" evidence=IDA

GO:0072357 "PTW/PP1 phosphatase complex" evidence=IDA

GO:0035097 "histone methyltransferase complex" evidence=IDA

GO:0051568 "histone H3-K4 methylation" evidence=IDA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IDA

UNIPROTKB|F2Z5U3 WDR82 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 110/258 (42%), Positives = 173/258 (67%)

Query:    14 LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN 73
             ++L++ +L+S  V   FR+ + +I+  DF  +   ++++SDD+SI LYD       +T+ 
Sbjct:     1 MKLTDSVLRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLY 60

Query:    74 SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK 133
             SKKYGVDL+ +T    TV+YSS N  D+++R LSLHDNKY+RYF GH  RVV+LS+    
Sbjct:    61 SKKYGVDLIRYTHAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVD 119

Query:   134 DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG-YIRMFDARKY 192
             D FISGSLD+T+ LWD R+  CQGL+ +QG+P  ++D +GL+FA       ++++D R +
Sbjct:   120 DTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSF 179

Query:   193 EKGPFDIFSVGGDIS-DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 251
             +KGPF  F +  D + +   +KFSNDG+L+L++T    I ++D+F+G ++ T+     S+
Sbjct:   180 DKGPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSK 239

Query:   252 NSTLEASFSPEGMFVISG 269
               TLEASF+P+  F++ G
Sbjct:   240 AVTLEASFTPDSQFIMIG 257

GO:0072357 "PTW/PP1 phosphatase complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0000785 "chromatin" evidence=IEA

MGI|MGI:1924555 Wdr82 "WD repeat domain containing 82" [Mus musculus (taxid:10090)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 110/258 (42%), Positives = 173/258 (67%)

Query:    14 LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN 73
             ++L++ +L+S  V   FR+ + +I+  DF  +   ++++SDD+SI LYD       +T+ 
Sbjct:     1 MKLTDSVLRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLY 60

Query:    74 SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK 133
             SKKYGVDL+ +T    TV+YSS N  D+++R LSLHDNKY+RYF GH  RVV+LS+    
Sbjct:    61 SKKYGVDLIRYTHAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVD 119

Query:   134 DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG-YIRMFDARKY 192
             D FISGSLD+T+ LWD R+  CQGL+ +QG+P  ++D +GL+FA       ++++D R +
Sbjct:   120 DTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSF 179

Query:   193 EKGPFDIFSVGGDIS-DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 251
             +KGPF  F +  D + +   +KFSNDG+L+L++T    I ++D+F+G ++ T+     S+
Sbjct:   180 DKGPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSK 239

Query:   252 NSTLEASFSPEGMFVISG 269
               TLEASF+P+  F++ G
Sbjct:   240 AVTLEASFTPDSQFIMIG 257

GO:0000785 "chromatin" evidence=ISO

GO:0003682 "chromatin binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0035097 "histone methyltransferase complex" evidence=ISO

GO:0048188 "Set1C/COMPASS complex" evidence=ISO

GO:0051568 "histone H3-K4 methylation" evidence=ISO;IMP

GO:0072357 "PTW/PP1 phosphatase complex" evidence=ISO

ZFIN|ZDB-GENE-030131-333 wdr82 "WD repeat domain containing 82" [Danio rerio (taxid:7955)]

 Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
 Identities = 110/258 (42%), Positives = 174/258 (67%)

Query:    14 LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN 73
             ++L++ +L+S  V   FR+ + +I+  DF  +   ++++SDD+SI LYD       +T+ 
Sbjct:     1 MKLTDSVLRSFRVAKVFRENSDKINCFDFSSNGETVISSSDDDSIVLYDCQEGKPKRTLY 60

Query:    74 SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK 133
             SKKYGVDL+ +T    TV+YSS N  D+++R LSLHDNKY+RYF GH+ RVV+LS+    
Sbjct:    61 SKKYGVDLIRYTHAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHNKRVVALSMSPVD 119

Query:   134 DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG-YIRMFDARKY 192
             D FISGSLD+T+ LWD R+  CQGL+ +QG+P  ++D +GL+FA       ++++D R +
Sbjct:   120 DTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSF 179

Query:   193 EKGPFDIFSVGGDIS-DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 251
             +KGPF  F +  + + +   +KFSNDG+L+L++T  G + VLD+F+G +L ++     S+
Sbjct:   180 DKGPFATFKLQYERTCEWTGLKFSNDGKLILVSTNGGTLRVLDAFKGAVLHSFGGYNNSK 239

Query:   252 NSTLEASFSPEGMFVISG 269
                LEASF+P+  F++ G
Sbjct:   240 GVILEASFTPDSQFIMIG 257

GO:0003779 "actin binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5ZMV7	WDR82_CHICK	No assigned EC number	0.4341	0.9239	0.8146	yes	no
Q6GL39	WDR82_XENTR	No assigned EC number	0.4224	0.9239	0.8146	yes	no
Q6UXN9	WDR82_HUMAN	No assigned EC number	0.4263	0.9239	0.8146	yes	no
Q8BFQ4	WDR82_MOUSE	No assigned EC number	0.4263	0.9239	0.8146	yes	no
Q6NV31	WDR82_DANRE	No assigned EC number	0.4263	0.9239	0.8146	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	276
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-24
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-23
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-15
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-11
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-11
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-08
smart00320	40	smart00320, WD40, WD40 repeats	1e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-05
smart00320	40	smart00320, WD40, WD40 repeats	6e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 97.8 bits (244), Expect = 5e-24
 Identities = 54/201 (26%), Positives = 90/201 (44%), Gaps = 10/201 (4%)

Query: 21  LQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVD 80
           L++ E   +   +   +SS+ F      L ++S D++I+++DV    CL T+      V+
Sbjct: 80  LETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVN 139

Query: 81  LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS 140
            V F+   T V  SS    D +++L  L   K +    GH   V S++     +  +S S
Sbjct: 140 SVAFSPDGTFVASSS---QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS 196

Query: 141 LDRTVLLWDQRAEKCQGLLRVQGRP---AAAYDDQGLVFAVAFGGYIRMFDARKYEKGPF 197
            D T+ LWD    KC G LR         A   D  L+ + +  G IR++D R  E    
Sbjct: 197 SDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGEC--- 253

Query: 198 DIFSVGGDISDANVVKFSNDG 218
            + ++ G  +    + +S DG
Sbjct: 254 -VQTLSGHTNSVTSLAWSPDG 273

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 94.7 bits (236), Expect = 8e-23
 Identities = 62/243 (25%), Positives = 104/243 (42%), Gaps = 13/243 (5%)

Query: 30  FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT 89
            + + G ++ + F      L T S D +I+++D+     L+T+      V  V  ++   
Sbjct: 5   LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASAD-G 63

Query: 90  TVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD 149
           T + S     D+++RL  L   + +R   GH   V S++         S S D+T+ +WD
Sbjct: 64  TYLASG--SSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD 121

Query: 150 QRAEKCQGLLRVQGRP--AAAYD-DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDI 206
               KC   LR       + A+  D   V + +  G I+++D R          +  G  
Sbjct: 122 VETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR--TGKCVATLT--GHT 177

Query: 207 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFV 266
            + N V FS DG  +L ++ +G I + D   G  L T        NS    +FSP+G  +
Sbjct: 178 GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS---VAFSPDGYLL 234

Query: 267 ISG 269
            SG
Sbjct: 235 ASG 237

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 73.1 bits (180), Expect = 4e-15
 Identities = 33/129 (25%), Positives = 66/129 (51%), Gaps = 3/129 (2%)

Query: 21  LQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVD 80
           L++ +   +   + G ++S+ F      L+++S D +I+L+D++   CL T+   + GV+
Sbjct: 164 LRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVN 223

Query: 81  LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS 140
            V F+     +   S++G   ++R+  L   + ++   GH + V SL+         SGS
Sbjct: 224 SVAFSPDGYLLASGSEDG---TIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGS 280

Query: 141 LDRTVLLWD 149
            D T+ +WD
Sbjct: 281 ADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 64.3 bits (155), Expect = 1e-11
 Identities = 67/275 (24%), Positives = 113/275 (41%), Gaps = 14/275 (5%)

Query: 3   GSQSEREDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYD 62
           GS       ++L     +       +  R +   I+S+ F      L++ S D +I+L+D
Sbjct: 34  GSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWD 93

Query: 63  V-TAATCLKTINSKKYG-VDLVCFTSHPTTVIYSSKNGWDESLRLLSL-HDNKYLRYFKG 119
           +      +K++       V  +  +S     I  + +  D +++L  L    K +R  +G
Sbjct: 94  LDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEG 153

Query: 120 HHDRVVSLSLCSSKDCFISGS-LDRTVLLWDQRAEKCQGLLRVQGRP----AAAYDDQGL 174
           H + V SL+         SGS LD T+ LWD R  K    L     P    A + D   L
Sbjct: 154 HSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLL 213

Query: 175 VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD 234
           + + +  G IR++D    +     +       SD+ V  FS DG L+   + +G I + D
Sbjct: 214 IASGSSDGTIRLWDLSTGKLLRSTLSGH----SDSVVSSFSPDGSLLASGSSDGTIRLWD 269

Query: 235 SFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG 269
               +  S         +S L  +FSP+G  + SG
Sbjct: 270 L--RSSSSLLRTLSGHSSSVLSVAFSPDGKLLASG 302

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 62.0 bits (149), Expect = 6e-11
 Identities = 60/253 (23%), Positives = 96/253 (37%), Gaps = 14/253 (5%)

Query: 28  MSFRDYNGRISSMDFHKSSSYLVTASD-DESIRLYDVTAATCLKTINSKKYGVDLVCFTS 86
            +   ++  ++S+ F      L + S  D +I+L+D+     L T+      V  + F  
Sbjct: 149 RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAF-- 206

Query: 87  HPTTVIYSSKNGWDESLRLLSLHDNKYLR-YFKGHHDRVVSLSLCSSKDCFISGSLDRTV 145
            P   +  +    D ++RL  L   K LR    GH D VVS S         SGS D T+
Sbjct: 207 SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS-SFSPDGSLLASGSSDGTI 265

Query: 146 LLWDQRAE-KCQGLLRVQGRP--AAAYDDQGLVFAVAFG-GYIRMFDARKYEKGPFDIFS 201
            LWD R+       L        + A+   G + A     G +R++D    +       +
Sbjct: 266 RLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL--LSSLT 323

Query: 202 VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP 261
           + G     + + FS DG L++    +     L   R              ++ L  SFSP
Sbjct: 324 LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR---TGKPLKTLEGHSNVLSVSFSP 380

Query: 262 EGMFVISGRVSPF 274
           +G  V SG     
Sbjct: 381 DGRVVSSGSTDGT 393

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 55.1 bits (131), Expect = 1e-08
 Identities = 35/170 (20%), Positives = 61/170 (35%), Gaps = 4/170 (2%)

Query: 28  MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 87
            +   ++  + S+ F      L + S D ++RL+D+     L ++  K +   +   +  
Sbjct: 278 RTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFS 337

Query: 88  PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLL 147
           P   +  S    D ++RL  L            H  V+S+S         SGS D TV L
Sbjct: 338 PDGSLLVSGGSDDGTIRLWDL-RTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRL 396

Query: 148 WDQRAEKCQGLLRVQG---RPAAAYDDQGLVFAVAFGGYIRMFDARKYEK 194
           WD         L              D   + + +    IR++D +   K
Sbjct: 397 WDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLK 446

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 14/40 (35%), Positives = 19/40 (47%)

Query: 110 DNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD 149
             + L+  KGH   V S++         SGS D T+ LWD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 39.6 bits (93), Expect = 4e-05
 Identities = 16/38 (42%), Positives = 20/38 (52%)

Query: 112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD 149
           K LR  KGH   V S++     +   SGS D TV +WD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 39.2 bits (92), Expect = 6e-05
 Identities = 13/40 (32%), Positives = 24/40 (60%)

Query: 23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYD 62
          S E+  + + + G ++S+ F     YL + SDD +I+L+D
Sbjct: 1  SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 9/34 (26%), Positives = 21/34 (61%)

Query: 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYD 62
          + + + G ++S+ F    + L + SDD ++R++D
Sbjct: 6  TLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	276
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0294	362	consensus WD40 repeat-containing protein [Function	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0973	942	consensus Histone transcription regulator HIRA, WD	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0289	506	consensus mRNA splicing factor [General function p	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
KOG0641	350	consensus WD40 repeat protein [General function pr	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0647	347	consensus mRNA export protein (contains WD40 repea	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0289	506	consensus mRNA splicing factor [General function p	100.0
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.98
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.98
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.97
KOG2096	420	consensus WD40 repeat protein [General function pr	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.97
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0646	476	consensus WD40 repeat protein [General function pr	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0267	825	consensus Microtubule severing protein katanin p80	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
KOG0639	705	consensus Transducin-like enhancer of split protei	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.96
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG1274	933	consensus WD40 repeat protein [General function pr	99.95
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.95
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.95
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.95
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.95
KOG1273	405	consensus WD40 repeat protein [General function pr	99.95
KOG2055	514	consensus WD40 repeat protein [General function pr	99.95
KOG1274	933	consensus WD40 repeat protein [General function pr	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG1539	910	consensus WD repeat protein [General function pred	99.95
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.95
KOG2048	691	consensus WD40 repeat protein [General function pr	99.95
KOG0267	825	consensus Microtubule severing protein katanin p80	99.95
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.95
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.94
KOG0639	705	consensus Transducin-like enhancer of split protei	99.94
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.94
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.94
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.94
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.94
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.94
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.94
KOG0646	476	consensus WD40 repeat protein [General function pr	99.94
KOG4328	498	consensus WD40 protein [Function unknown]	99.94
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.93
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.93
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.93
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.93
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.92
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.92
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.92
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.92
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.92
KOG2048	691	consensus WD40 repeat protein [General function pr	99.92
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.92
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.91
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.91
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.91
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.91
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.91
KOG2096	420	consensus WD40 repeat protein [General function pr	99.91
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.91
KOG4328	498	consensus WD40 protein [Function unknown]	99.91
KOG1539	910	consensus WD repeat protein [General function pred	99.91
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.91
KOG1273	405	consensus WD40 repeat protein [General function pr	99.91
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.9
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.9
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.9
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.9
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.9
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.9
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.89
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.89
PRK11028	330	6-phosphogluconolactonase; Provisional	99.89
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.89
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.88
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.88
KOG1188	376	consensus WD40 repeat protein [General function pr	99.88
PRK01742	429	tolB translocation protein TolB; Provisional	99.88
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.88
KOG4227	609	consensus WD40 repeat protein [General function pr	99.87
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.87
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.87
COG2319	466	FOG: WD40 repeat [General function prediction only	99.87
KOG1310	758	consensus WD40 repeat protein [General function pr	99.87
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.86
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.86
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.86
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.86
KOG0649	325	consensus WD40 repeat protein [General function pr	99.86
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.86
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.85
COG2319	466	FOG: WD40 repeat [General function prediction only	99.85
KOG2055	514	consensus WD40 repeat protein [General function pr	99.85
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.85
PRK03629	429	tolB translocation protein TolB; Provisional	99.85
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.84
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.84
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.84
PRK01742	429	tolB translocation protein TolB; Provisional	99.84
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.83
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.83
KOG0649	325	consensus WD40 repeat protein [General function pr	99.82
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.82
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.82
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.82
PRK05137	435	tolB translocation protein TolB; Provisional	99.81
PRK04922	433	tolB translocation protein TolB; Provisional	99.81
PRK05137	435	tolB translocation protein TolB; Provisional	99.81
PRK11028	330	6-phosphogluconolactonase; Provisional	99.81
KOG1188	376	consensus WD40 repeat protein [General function pr	99.81
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.81
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.8
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.8
PRK02889	427	tolB translocation protein TolB; Provisional	99.8
PRK03629	429	tolB translocation protein TolB; Provisional	99.8
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.79
PRK04922	433	tolB translocation protein TolB; Provisional	99.79
KOG2139	445	consensus WD40 repeat protein [General function pr	99.78
KOG2139	445	consensus WD40 repeat protein [General function pr	99.78
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.78
KOG1963	792	consensus WD40 repeat protein [General function pr	99.78
KOG2321	703	consensus WD40 repeat protein [General function pr	99.78
PRK02889	427	tolB translocation protein TolB; Provisional	99.78
KOG1963	792	consensus WD40 repeat protein [General function pr	99.77
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.77
KOG1334	559	consensus WD40 repeat protein [General function pr	99.77
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.76
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.76
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.75
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.75
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.74
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.74
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.74
PRK00178	430	tolB translocation protein TolB; Provisional	99.74
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.74
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.73
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.73
PRK04792	448	tolB translocation protein TolB; Provisional	99.72
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.72
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.71
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.71
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.7
PRK00178	430	tolB translocation protein TolB; Provisional	99.69
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.69
KOG4227	609	consensus WD40 repeat protein [General function pr	99.68
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.68
PRK01029	428	tolB translocation protein TolB; Provisional	99.68
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.67
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.67
PRK04792	448	tolB translocation protein TolB; Provisional	99.66
KOG1310	758	consensus WD40 repeat protein [General function pr	99.65
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.65
PRK01029	428	tolB translocation protein TolB; Provisional	99.61
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.61
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.6
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.6
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.59
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.59
KOG4547	541	consensus WD40 repeat-containing protein [General	99.57
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.56
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.55
PRK04043	419	tolB translocation protein TolB; Provisional	99.55
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.54
KOG2321	703	consensus WD40 repeat protein [General function pr	99.54
PRK04043	419	tolB translocation protein TolB; Provisional	99.54
KOG2315	566	consensus Predicted translation initiation factor	99.52
KOG2314	698	consensus Translation initiation factor 3, subunit	99.51
KOG2315	566	consensus Predicted translation initiation factor	99.51
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.5
COG4946	668	Uncharacterized protein related to the periplasmic	99.48
KOG4547	541	consensus WD40 repeat-containing protein [General	99.47
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.46
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.45
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.45
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.44
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.43
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.43
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.42
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.42
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.41
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	99.41
COG4946	668	Uncharacterized protein related to the periplasmic	99.39
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.39
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.36
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.36
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.36
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.34
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.33
KOG2314	698	consensus Translation initiation factor 3, subunit	99.33
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.31
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.27
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.27
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.26
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.26
KOG1334	559	consensus WD40 repeat protein [General function pr	99.26
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.25
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.24
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.2
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.19
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.18
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.17
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.17
KOG2695	425	consensus WD40 repeat protein [General function pr	99.15
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.14
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.13
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.12
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.1
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.09
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.09
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.05
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.05
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.05
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.02
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.01
KOG2695	425	consensus WD40 repeat protein [General function pr	98.96
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.96
PRK02888	635	nitrous-oxide reductase; Validated	98.95
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.95
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.94
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.94
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.92
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.92
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.91
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.9
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.9
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.89
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.89
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.89
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.88
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.86
COG3391	381	Uncharacterized conserved protein [Function unknow	98.84
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.84
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.83
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.79
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.79
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.75
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.74
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.74
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.72
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.7
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.69
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.69
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.68
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.63
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.61
KOG3621	726	consensus WD40 repeat-containing protein [General	98.6
COG3391	381	Uncharacterized conserved protein [Function unknow	98.58
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.57
PRK02888	635	nitrous-oxide reductase; Validated	98.55
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.53
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.51
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.45
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.45
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.42
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.42
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.4
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	98.37
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.36
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.34
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.32
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.23
PRK13616	591	lipoprotein LpqB; Provisional	98.22
KOG3621	726	consensus WD40 repeat-containing protein [General	98.2
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.2
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.18
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.18
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.14
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.14
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.12
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.09
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.09
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.08
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.08
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.07
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.05
PRK13616	591	lipoprotein LpqB; Provisional	98.04
KOG2395	644	consensus Protein involved in vacuole import and d	98.0
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.93
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.89
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.87
KOG2395	644	consensus Protein involved in vacuole import and d	97.86
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.85
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.79
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.75
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.74
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.71
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.66
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.65
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.65
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.62
PHA02713	557	hypothetical protein; Provisional	97.59
PRK10115	686	protease 2; Provisional	97.59
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.58
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.56
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.56
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.56
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.56
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.55
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.54
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.52
PHA02713	557	hypothetical protein; Provisional	97.5
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.43
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.42
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.41
PHA03098	534	kelch-like protein; Provisional	97.37
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.34
KOG2444	238	consensus WD40 repeat protein [General function pr	97.31
KOG2444	238	consensus WD40 repeat protein [General function pr	97.29
PHA02790	480	Kelch-like protein; Provisional	97.28
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.27
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	97.26
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.25
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	97.25
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.13
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.12
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.09
COG5167	776	VID27 Protein involved in vacuole import and degra	97.07
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	97.0
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	96.99
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.87
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.8
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.79
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.79
PHA03098	534	kelch-like protein; Provisional	96.76
PRK13684	334	Ycf48-like protein; Provisional	96.75
KOG2247	615	consensus WD40 repeat-containing protein [General	96.66
PRK13684	334	Ycf48-like protein; Provisional	96.55
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.51
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.47
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.37
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	96.37
COG5167	776	VID27 Protein involved in vacuole import and degra	96.29
PHA02790	480	Kelch-like protein; Provisional	96.21
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.19
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.15
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	96.11
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.04
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.03
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.96
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.91
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.83
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.81
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	95.76
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.73
COG4590	733	ABC-type uncharacterized transport system, permeas	95.68
KOG2377	657	consensus Uncharacterized conserved protein [Funct	95.66
PLN00033	398	photosystem II stability/assembly factor; Provisio	95.61
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.52
PF13449	326	Phytase-like: Esterase-like activity of phytase	95.52
KOG2247	615	consensus WD40 repeat-containing protein [General	95.45
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.31
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	95.18
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	95.0
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	94.98
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	94.9
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.87
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	94.71
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.7
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	94.59
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	94.56
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	94.1
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	94.04
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	93.98
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	93.75
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	93.57
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	93.49
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	93.42
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	93.41
PRK10115	686	protease 2; Provisional	93.37
PLN00033	398	photosystem II stability/assembly factor; Provisio	93.35
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	93.31
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	93.22
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	93.19
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	93.04
COG1520	370	FOG: WD40-like repeat [Function unknown]	93.04
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	92.82
COG1506	620	DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept	92.74
PF14727	418	PHTB1_N: PTHB1 N-terminus	92.72
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	92.64
COG5276	370	Uncharacterized conserved protein [Function unknow	92.6
COG4590	733	ABC-type uncharacterized transport system, permeas	92.48
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	92.47
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	92.45
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	92.4
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	92.39
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	92.16
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	92.05
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	92.03
KOG3616	1636	consensus Selective LIM binding factor [Transcript	91.97
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	91.41
PLN02153	341	epithiospecifier protein	90.95
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	90.69
PF13449	326	Phytase-like: Esterase-like activity of phytase	90.57
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	90.15
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	90.07
PLN02153	341	epithiospecifier protein	89.89
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	89.85
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	89.55
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	89.03
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	88.74
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	88.69
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	88.67
PLN02193	470	nitrile-specifier protein	88.61
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	88.35
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	88.33
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	88.24
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	88.17
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	87.65
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	87.59

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.2e-48  Score=293.26  Aligned_cols=243  Identities=19%  Similarity=0.306  Sum_probs=230.7

Q ss_pred             ccccceeeccCCCcEEEEEEcCC--CCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCC
Q 023822           23 SMEVGMSFRDYNGRISSMDFHKS--SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD  100 (276)
Q Consensus        23 ~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d  100 (276)
                      +.....+|.||.+.|.++.|+|.  +..||+|+.||++++|++++..++..+.+|...|..++|+|+|++|.+++.   |
T Consensus       206 ~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~Tasf---D  282 (459)
T KOG0272|consen  206 QCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASF---D  282 (459)
T ss_pred             CcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeeccc---c
Confidence            34677899999999999999995  668999999999999999999999999999999999999999999999998   9


Q ss_pred             CceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEE
Q 023822          101 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAV  178 (276)
Q Consensus       101 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~  178 (276)
                      .+-++||++++..+....+|...|.+++|+|||.++++|+.|..-+|||+|+++++..+  |...+..+.|+|+|..+++
T Consensus       283 ~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lAT  362 (459)
T KOG0272|consen  283 STWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLAT  362 (459)
T ss_pred             cchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEee
Confidence            99999999999999889999999999999999999999999999999999999999999  7778899999999999999


Q ss_pred             ee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECC-CCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEE
Q 023822          179 AF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE  256 (276)
Q Consensus       179 ~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~  256 (276)
                      |+ |++++|||++..+.    .+.+++|..-|+.+.|+| .|.+|++++.|++++||...+..+++.+.   +|++.|.+
T Consensus       363 gs~Dnt~kVWDLR~r~~----ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLa---GHe~kV~s  435 (459)
T KOG0272|consen  363 GSSDNTCKVWDLRMRSE----LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLA---GHEGKVIS  435 (459)
T ss_pred             cCCCCcEEEeeeccccc----ceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhc---CCccceEE
Confidence            88 99999999998765    888899999999999999 68999999999999999999999999999   89999999


Q ss_pred             EEECCCCcEEEEecCCCCC
Q 023822          257 ASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       257 ~~~s~~g~~l~~~~~dg~v  275 (276)
                      +.++||+.++++++.|.++
T Consensus       436 ~Dis~d~~~i~t~s~DRT~  454 (459)
T KOG0272|consen  436 LDISPDSQAIATSSFDRTI  454 (459)
T ss_pred             EEeccCCceEEEeccCcee
Confidence            9999999999999999874

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-47  Score=285.21  Aligned_cols=243  Identities=23%  Similarity=0.337  Sum_probs=216.8

Q ss_pred             ceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEE
Q 023822           27 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL  106 (276)
Q Consensus        27 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~  106 (276)
                      ...+.||.++|.|++|+|+|..|++|+.|.++|+||+.+..+..+.++|...|.+++|+||++.|++++.   ||+|++|
T Consensus       108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~---dg~I~lw  184 (480)
T KOG0271|consen  108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSK---DGSIRLW  184 (480)
T ss_pred             ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhcccc---CCeEEEe
Confidence            3457899999999999999999999999999999999999999999999999999999999999999999   9999999


Q ss_pred             EccCCce-eeeecccCcceEEEEecc-----CCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEE
Q 023822          107 SLHDNKY-LRYFKGHHDRVVSLSLCS-----SKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAV  178 (276)
Q Consensus       107 d~~~~~~-~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~  178 (276)
                      |..++++ ...+.+|...|++++|.|     ..++|++++.||.++|||+..+.++..+  |...+.|+.|-.+|.+..+
T Consensus       185 dpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySg  264 (480)
T KOG0271|consen  185 DPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSG  264 (480)
T ss_pred             cCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEec
Confidence            9998875 457899999999999986     5679999999999999999999999888  6777889999888877777


Q ss_pred             eeCCeEEEEecccCCC--------------------------------C-------------------------------
Q 023822          179 AFGGYIRMFDARKYEK--------------------------------G-------------------------------  195 (276)
Q Consensus       179 ~~d~~i~~~d~~~~~~--------------------------------~-------------------------------  195 (276)
                      +.|++|++|+...+..                                .                               
T Consensus       265 S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD  344 (480)
T KOG0271|consen  265 SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD  344 (480)
T ss_pred             CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence            7799999998765320                                0                               


Q ss_pred             ------------CeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCC
Q 023822          196 ------------PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG  263 (276)
Q Consensus       196 ------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  263 (276)
                                  ...+..+.+|..-|+.+.||||++++|+++.|..|++|+.++|+.+..|+   +|-++|+.++|+.|.
T Consensus       345 d~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfR---GHv~~VYqvawsaDs  421 (480)
T KOG0271|consen  345 DFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFR---GHVAAVYQVAWSADS  421 (480)
T ss_pred             CceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhh---hccceeEEEEeccCc
Confidence                        00112344577889999999999999999999999999999999999999   899999999999999


Q ss_pred             cEEEEecCCCCC
Q 023822          264 MFVISGRVSPFS  275 (276)
Q Consensus       264 ~~l~~~~~dg~v  275 (276)
                      ++|++||.|.+.
T Consensus       422 RLlVS~SkDsTL  433 (480)
T KOG0271|consen  422 RLLVSGSKDSTL  433 (480)
T ss_pred             cEEEEcCCCceE
Confidence            999999999874

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.6e-46  Score=281.94  Aligned_cols=242  Identities=23%  Similarity=0.281  Sum_probs=224.7

Q ss_pred             cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEecc--CCeEEEeccCCCCC
Q 023822           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH--PTTVIYSSKNGWDE  101 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~~d~  101 (276)
                      +.+...--+.+.+|..+.|+++++.|+||+.+|.++||+..+...+..+.+|...+.++.|+|.  +..+++++.   ||
T Consensus       165 ~~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~---Dg  241 (459)
T KOG0272|consen  165 LELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASA---DG  241 (459)
T ss_pred             hhhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeecc---CC
Confidence            3333444567899999999999999999999999999999999999999999999999999997  568999998   99


Q ss_pred             ceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEe
Q 023822          102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVA  179 (276)
Q Consensus       102 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~  179 (276)
                      ++++|++.+..++..+.+|...|..++|+|+|++|++++.|.+-++||++++......  |..++.+++|.++|.++++|
T Consensus       242 tvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tG  321 (459)
T KOG0272|consen  242 TVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATG  321 (459)
T ss_pred             ceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeecc
Confidence            9999999999999999999999999999999999999999999999999998876665  66778999999999999999


Q ss_pred             e-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEE
Q 023822          180 F-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS  258 (276)
Q Consensus       180 ~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~  258 (276)
                      + |..-+|||++++++    +..+.+|..+|.+++|+|+|..||+|+.|++++|||++..+.+..+.   +|.+-|+.+.
T Consensus       322 GlD~~~RvWDlRtgr~----im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ip---AH~nlVS~Vk  394 (459)
T KOG0272|consen  322 GLDSLGRVWDLRTGRC----IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIP---AHSNLVSQVK  394 (459)
T ss_pred             CccchhheeecccCcE----EEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecc---cccchhhheE
Confidence            8 99999999999887    77888999999999999999999999999999999999999988888   8999999999


Q ss_pred             ECC-CCcEEEEecCCCCC
Q 023822          259 FSP-EGMFVISGRVSPFS  275 (276)
Q Consensus       259 ~s~-~g~~l~~~~~dg~v  275 (276)
                      |+| .|.+|++++.|+++
T Consensus       395 ~~p~~g~fL~TasyD~t~  412 (459)
T KOG0272|consen  395 YSPQEGYFLVTASYDNTV  412 (459)
T ss_pred             ecccCCeEEEEcccCcce
Confidence            999 78999999999886

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=4.1e-44  Score=257.51  Aligned_cols=248  Identities=23%  Similarity=0.343  Sum_probs=212.7

Q ss_pred             ccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCC----
Q 023822           23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG----   98 (276)
Q Consensus        23 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~----   98 (276)
                      .++..++|+||.+.|.++.|++|.+.|++++.||.+.|||.-+...+..++.....|..++|+|.+++++.++-++    
T Consensus        44 ~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csi  123 (343)
T KOG0286|consen   44 QMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSI  123 (343)
T ss_pred             eeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEE
Confidence            4566688999999999999999999999999999999999866555444444444444444444444444443311    


Q ss_pred             ----------------------------------------CCCceEEEEccCCceeeeecccCcceEEEEecc-CCCEEE
Q 023822           99 ----------------------------------------WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS-SKDCFI  137 (276)
Q Consensus        99 ----------------------------------------~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~  137 (276)
                                                              .|.+..+||+++++.+..+.+|.+.|.+++++| +++.|+
T Consensus       124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFv  203 (343)
T KOG0286|consen  124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFV  203 (343)
T ss_pred             EecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEE
Confidence                                                    088999999999999999999999999999999 999999


Q ss_pred             EeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEE
Q 023822          138 SGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKF  214 (276)
Q Consensus       138 ~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~  214 (276)
                      +|+-|+..++||+|.+.+.+.+  |...++.+.|.|+|.-+++++ |++.++||+|..+.  +.++.......+|++++|
T Consensus       204 Sg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~--~a~ys~~~~~~gitSv~F  281 (343)
T KOG0286|consen  204 SGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE--LAVYSHDSIICGITSVAF  281 (343)
T ss_pred             ecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcE--EeeeccCcccCCceeEEE
Confidence            9999999999999999999999  667799999999999999998 79999999998553  445555566679999999


Q ss_pred             CCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          215 SNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       215 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      |..|++|++|..|..+.+||.-.++....+.   +|++.|.++..+|||.-|++||+|.++
T Consensus       282 S~SGRlLfagy~d~~c~vWDtlk~e~vg~L~---GHeNRvScl~~s~DG~av~TgSWDs~l  339 (343)
T KOG0286|consen  282 SKSGRLLFAGYDDFTCNVWDTLKGERVGVLA---GHENRVSCLGVSPDGMAVATGSWDSTL  339 (343)
T ss_pred             cccccEEEeeecCCceeEeeccccceEEEee---ccCCeeEEEEECCCCcEEEecchhHhe
Confidence            9999999999999999999999999999999   899999999999999999999999875

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.1e-45  Score=273.14  Aligned_cols=242  Identities=20%  Similarity=0.275  Sum_probs=214.0

Q ss_pred             ccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeee-eeeeeeeeceEEEEEec-----cCCeEEEecc
Q 023822           23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL-KTINSKKYGVDLVCFTS-----HPTTVIYSSK   96 (276)
Q Consensus        23 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~~-----~~~~l~~~~~   96 (276)
                      .-.+..+.++|...|.|++|+|||+.||+|+.||+|++||.++|+++ ..+.+|...|++++|.|     ..+++++++.
T Consensus       146 TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~sk  225 (480)
T KOG0271|consen  146 TETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSK  225 (480)
T ss_pred             CCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccC
Confidence            34567889999999999999999999999999999999999988765 66899999999999976     4578899888


Q ss_pred             CCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE-----------------
Q 023822           97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-----------------  159 (276)
Q Consensus        97 ~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----------------  159 (276)
                         ||.++|||+..++++..+.+|+.+|+|+.|--+| ++++++.|++|++|+...+.+...+                 
T Consensus       226 ---Dg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~  301 (480)
T KOG0271|consen  226 ---DGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYV  301 (480)
T ss_pred             ---CCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhh
Confidence               9999999999999999999999999999996554 8999999999999987653311110                 


Q ss_pred             ----------------------------------------------------------------eecCCCeeEecCCCcE
Q 023822          160 ----------------------------------------------------------------RVQGRPAAAYDDQGLV  175 (276)
Q Consensus       160 ----------------------------------------------------------------~~~~~~~~~~~~~~~~  175 (276)
                                                                                      |..-++.+.|+|++++
T Consensus       302 LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~  381 (480)
T KOG0271|consen  302 LRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRY  381 (480)
T ss_pred             hhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccE
Confidence                                                                            1222457899999999


Q ss_pred             EEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCce
Q 023822          176 FAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNST  254 (276)
Q Consensus       176 l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  254 (276)
                      +++++ |..|++||.++++.    +..+.+|-.+|..++|+.|.++|++|+.|.++++|++++.++...+.   +|...|
T Consensus       382 IASaSFDkSVkLW~g~tGk~----lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLp---Gh~DEV  454 (480)
T KOG0271|consen  382 IASASFDKSVKLWDGRTGKF----LASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLP---GHADEV  454 (480)
T ss_pred             EEEeecccceeeeeCCCcch----hhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCC---CCCceE
Confidence            99998 99999999999886    77888999999999999999999999999999999999999988888   899999


Q ss_pred             EEEEECCCCcEEEEecCCCCC
Q 023822          255 LEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       255 ~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      .++.|+|||..+++|+.|..+
T Consensus       455 f~vDwspDG~rV~sggkdkv~  475 (480)
T KOG0271|consen  455 FAVDWSPDGQRVASGGKDKVL  475 (480)
T ss_pred             EEEEecCCCceeecCCCceEE
Confidence            999999999999999999754

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1e-41  Score=243.67  Aligned_cols=248  Identities=15%  Similarity=0.217  Sum_probs=211.4

Q ss_pred             HHhhccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCC
Q 023822           19 EILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG   98 (276)
Q Consensus        19 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~   98 (276)
                      +...-..+++.++||...|..++.++||++.++++.|+++++||+.+++..+.|.+|...|.+++|++|++.+++++.  
T Consensus        48 dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSr--  125 (315)
T KOG0279|consen   48 DDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSR--  125 (315)
T ss_pred             CccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCC--
Confidence            344455678899999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             CCCceEEEEccCCceeeeecc-cCcceEEEEeccC--CCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCC
Q 023822           99 WDESLRLLSLHDNKYLRYFKG-HHDRVVSLSLCSS--KDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQG  173 (276)
Q Consensus        99 ~d~~i~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~  173 (276)
                       |.+|++|++........... +.+.|.|+.|+|+  ..+|++++.|++|++||+++.+....+  +.+.++.++++|||
T Consensus       126 -DkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDG  204 (315)
T KOG0279|consen  126 -DKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDG  204 (315)
T ss_pred             -cceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCC
Confidence             99999999876544333332 3789999999998  669999999999999999999988887  56668899999999


Q ss_pred             cEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCC-C--
Q 023822          174 LVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP-V--  249 (276)
Q Consensus       174 ~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~--  249 (276)
                      .+.+.|. ||.+.+||++..+.    .+.+ .+...|.+++|+|+...|+.+. +-.|+|||+.++.++..+.... +  
T Consensus       205 slcasGgkdg~~~LwdL~~~k~----lysl-~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s  278 (315)
T KOG0279|consen  205 SLCASGGKDGEAMLWDLNEGKN----LYSL-EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPS  278 (315)
T ss_pred             CEEecCCCCceEEEEEccCCce----eEec-cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccc
Confidence            9999988 99999999998775    4443 4667899999999976666554 4569999999999888776321 1  


Q ss_pred             ---CCCceEEEEECCCCcEEEEecCCCCC
Q 023822          250 ---SRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       250 ---~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                         ......+++|++||..|++|-.|+.+
T Consensus       279 ~~~~~~~clslaws~dG~tLf~g~td~~i  307 (315)
T KOG0279|consen  279 SKAGDPICLSLAWSADGQTLFAGYTDNVI  307 (315)
T ss_pred             cccCCcEEEEEEEcCCCcEEEeeecCCcE
Confidence               13346789999999999999998864

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-40  Score=237.66  Aligned_cols=240  Identities=19%  Similarity=0.269  Sum_probs=212.2

Q ss_pred             ccccceeeccCCCcEEEEEEcCC-CCEEEEeecCCeEEEEEcc-----CCeeeeeeeeeeeceEEEEEeccCCeEEEecc
Q 023822           23 SMEVGMSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVT-----AATCLKTINSKKYGVDLVCFTSHPTTVIYSSK   96 (276)
Q Consensus        23 ~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   96 (276)
                      .+....++++|++.|+.++..+. .+.+++++.|.++.+|++.     .|.+++.+.+|...|..+..++++++.++++.
T Consensus         4 ~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~sw   83 (315)
T KOG0279|consen    4 QLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASW   83 (315)
T ss_pred             hheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccc
Confidence            45566789999999999999885 5688999999999999875     46788999999999999999999999999997


Q ss_pred             CCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe---ecCCCeeEecCC-
Q 023822           97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR---VQGRPAAAYDDQ-  172 (276)
Q Consensus        97 ~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~-  172 (276)
                         |+.+++||+.+++..+.|.+|...|.+++|++|.+.+++|+.|.+|++|++..........   ..-+.++.|+|. 
T Consensus        84 ---D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~  160 (315)
T KOG0279|consen   84 ---DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNE  160 (315)
T ss_pred             ---cceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCC
Confidence               9999999999999999999999999999999999999999999999999987665443332   344789999998 


Q ss_pred             -CcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCC
Q 023822          173 -GLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS  250 (276)
Q Consensus       173 -~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  250 (276)
                       ..+++.++ |+++++||+++.+.    ...+.+|...++.+++||||.+.++|+.||.+.+||++.++.+..+.    +
T Consensus       161 ~~p~Ivs~s~DktvKvWnl~~~~l----~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~----a  232 (315)
T KOG0279|consen  161 SNPIIVSASWDKTVKVWNLRNCQL----RTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE----A  232 (315)
T ss_pred             CCcEEEEccCCceEEEEccCCcch----hhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc----C
Confidence             55666665 99999999998765    55677899999999999999999999999999999999999988886    8


Q ss_pred             CCceEEEEECCCCcEEEEecCCC
Q 023822          251 RNSTLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       251 ~~~v~~~~~s~~g~~l~~~~~dg  273 (276)
                      ...|.+++|+|+.-+|+.+...+
T Consensus       233 ~~~v~sl~fspnrywL~~at~~s  255 (315)
T KOG0279|consen  233 FDIVNSLCFSPNRYWLCAATATS  255 (315)
T ss_pred             CCeEeeEEecCCceeEeeccCCc
Confidence            89999999999988888776543

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.2e-41  Score=272.02  Aligned_cols=232  Identities=21%  Similarity=0.295  Sum_probs=215.5

Q ss_pred             CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCC-------------------------------eeeeeeeeeeeceEEE
Q 023822           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAA-------------------------------TCLKTINSKKYGVDLV   82 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-------------------------------~~~~~~~~~~~~v~~~   82 (276)
                      ...++|..|++|+..||.|-.|..|++|.+...                               ....++.+|.++|..+
T Consensus       378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~  457 (707)
T KOG0263|consen  378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC  457 (707)
T ss_pred             CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence            467999999999999999999999999998631                               1233467899999999


Q ss_pred             EEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--e
Q 023822           83 CFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--R  160 (276)
Q Consensus        83 ~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~  160 (276)
                      .|+|+.++|++++.   |+++++|.+.+...+..+++|..+|+++.|+|.|-+||+++.|++.++|......+.+.+  |
T Consensus       458 sFsPd~rfLlScSE---D~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifagh  534 (707)
T KOG0263|consen  458 SFSPDRRFLLSCSE---DSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGH  534 (707)
T ss_pred             eecccccceeeccC---CcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhccc
Confidence            99999999999999   999999999999999999999999999999999999999999999999999998888888  7


Q ss_pred             ecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCc
Q 023822          161 VQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT  239 (276)
Q Consensus       161 ~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  239 (276)
                      ...+.|+.|+|+..++++|+ |.++++||+.++..    +..+.+|..+|.+++|||+|++|++|+.||.|.+||+.+++
T Consensus       535 lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~----VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~  610 (707)
T KOG0263|consen  535 LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS----VRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS  610 (707)
T ss_pred             ccccceEEECCcccccccCCCCceEEEEEcCCCcE----EEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc
Confidence            78899999999999999998 99999999998776    66678999999999999999999999999999999999999


Q ss_pred             EEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          240 LLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       240 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      ++..+.   +|.+.|.++.|+.||..||+|+.|..|
T Consensus       611 ~v~~l~---~Ht~ti~SlsFS~dg~vLasgg~DnsV  643 (707)
T KOG0263|consen  611 LVKQLK---GHTGTIYSLSFSRDGNVLASGGADNSV  643 (707)
T ss_pred             chhhhh---cccCceeEEEEecCCCEEEecCCCCeE
Confidence            999999   789999999999999999999999875

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.1e-39  Score=229.85  Aligned_cols=245  Identities=14%  Similarity=0.217  Sum_probs=213.4

Q ss_pred             ccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCe--eeeeeeeeeeceEEEEEeccCCeEEEeccCCCC
Q 023822           23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD  100 (276)
Q Consensus        23 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d  100 (276)
                      +....++++...+.|+.+...|+++.||+++.. .||+||+.+++  ++.++.+|...|+.+.|..+|+.++++++   |
T Consensus        29 tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgse---D  104 (311)
T KOG0315|consen   29 TGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSE---D  104 (311)
T ss_pred             cCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCC---C
Confidence            345667777778899999999999999998764 69999998764  68999999999999999999999999999   9


Q ss_pred             CceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE---eecCCCeeEecCCCcEEE
Q 023822          101 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL---RVQGRPAAAYDDQGLVFA  177 (276)
Q Consensus       101 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~l~  177 (276)
                      |+++|||++...+.+.++ |..+|+++..+|+...|++|..+|.|++||+....+...+   ....+..+...|+|..++
T Consensus       105 gt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~  183 (311)
T KOG0315|consen  105 GTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLA  183 (311)
T ss_pred             ceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEE
Confidence            999999999977666665 7899999999999999999999999999999998777766   334567899999999999


Q ss_pred             Eee-CCeEEEEecccCCC--CCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCC-cEEEEeecCCCCCCc
Q 023822          178 VAF-GGYIRMFDARKYEK--GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG-TLLSTYNVKPVSRNS  253 (276)
Q Consensus       178 ~~~-d~~i~~~d~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~  253 (276)
                      +.. .|+.++|++-....  ....+..+..|...+..+.+||++++||++|.|.+++||+..+. +.-..+.   +|...
T Consensus       184 a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~---gh~rW  260 (311)
T KOG0315|consen  184 AANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLT---GHQRW  260 (311)
T ss_pred             EecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEee---cCCce
Confidence            888 69999999876432  23335567789999999999999999999999999999999887 4445555   78899


Q ss_pred             eEEEEECCCCcEEEEecCCCCC
Q 023822          254 TLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       254 v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      +++.+||.||+||++|+.|+++
T Consensus       261 vWdc~FS~dg~YlvTassd~~~  282 (311)
T KOG0315|consen  261 VWDCAFSADGEYLVTASSDHTA  282 (311)
T ss_pred             EEeeeeccCccEEEecCCCCce
Confidence            9999999999999999999875

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.9e-39  Score=232.74  Aligned_cols=253  Identities=49%  Similarity=0.826  Sum_probs=230.8

Q ss_pred             hccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCC
Q 023822           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE  101 (276)
Q Consensus        22 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~  101 (276)
                      .++++.+.++.-.+.|+++.|+++|..|++++.|.+++|||..+++.+.++..++..+..++|......++.++. ..|.
T Consensus         2 ~s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sSt-k~d~   80 (311)
T KOG1446|consen    2 RSFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSST-KEDD   80 (311)
T ss_pred             cccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccC-CCCC
Confidence            456777888888899999999999999999999999999999999999999999999999999988887777765 3489


Q ss_pred             ceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEeeC
Q 023822          102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFG  181 (276)
Q Consensus       102 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d  181 (276)
                      +|+..++.+++.++.+.+|...|.+++.+|-+..+++++.|++|++||+|..++...++..+.+.++|+|+|.++|++.+
T Consensus        81 tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~  160 (311)
T KOG1446|consen   81 TIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANG  160 (311)
T ss_pred             ceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999995


Q ss_pred             -CeEEEEecccCCCCCeeeeeec-CCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEE
Q 023822          182 -GYIRMFDARKYEKGPFDIFSVG-GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF  259 (276)
Q Consensus       182 -~~i~~~d~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~  259 (276)
                       ..|++||+|.....|+..+.+. ....+.+.+.|||||++|+.+...+.+++.|.-+|..+..+..++....-..+.+|
T Consensus       161 ~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~f  240 (311)
T KOG1446|consen  161 SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATF  240 (311)
T ss_pred             CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEE
Confidence             4999999999988998888876 55678999999999999999999999999999999999999865544434467899


Q ss_pred             CCCCcEEEEecCCCCC
Q 023822          260 SPEGMFVISGRVSPFS  275 (276)
Q Consensus       260 s~~g~~l~~~~~dg~v  275 (276)
                      +||++++++|+.||++
T Consensus       241 tPds~Fvl~gs~dg~i  256 (311)
T KOG1446|consen  241 TPDSKFVLSGSDDGTI  256 (311)
T ss_pred             CCCCcEEEEecCCCcE
Confidence            9999999999999985

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.8e-40  Score=265.70  Aligned_cols=234  Identities=23%  Similarity=0.355  Sum_probs=211.2

Q ss_pred             cceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEE
Q 023822           26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL  105 (276)
Q Consensus        26 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~  105 (276)
                      ..+++.||.++|..+.|+|+.++|+++++|+++|+|.+.+..++..+++|..+|+++.|+|.|-++++++.   |++-++
T Consensus       443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~---D~tArL  519 (707)
T KOG0263|consen  443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASH---DQTARL  519 (707)
T ss_pred             eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCC---Cceeee
Confidence            34568899999999999999999999999999999999999999999999999999999999999999988   999999


Q ss_pred             EEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-CC
Q 023822          106 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-GG  182 (276)
Q Consensus       106 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d~  182 (276)
                      |......+++.+.+|.+.|.|+.|+|+.+++++|+.|.++++||+.++..++.+  |..++.+++|+|+|++|+++. |+
T Consensus       520 Ws~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~  599 (707)
T KOG0263|consen  520 WSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDG  599 (707)
T ss_pred             eecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCC
Confidence            999999999999999999999999999999999999999999999999999999  667788999999999999999 89


Q ss_pred             eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCc-----------------------
Q 023822          183 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT-----------------------  239 (276)
Q Consensus       183 ~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------------------  239 (276)
                      .|.+||+.++..    +..+.+|.+.|.++.|+.+|..||+|+.|++|++||+..-.                       
T Consensus       600 ~I~iWDl~~~~~----v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~  675 (707)
T KOG0263|consen  600 LIKIWDLANGSL----VKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASS  675 (707)
T ss_pred             cEEEEEcCCCcc----hhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCc
Confidence            999999998775    66777889999999999999999999999999999975322                       


Q ss_pred             -EEEEeecCCCCCCceEEEEECCCCcEEEEe
Q 023822          240 -LLSTYNVKPVSRNSTLEASFSPEGMFVISG  269 (276)
Q Consensus       240 -~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  269 (276)
                       ++..+.   .-..+|..+.|..-+-.|+.|
T Consensus       676 ~llgs~~---tK~tpv~~l~FtrrNl~L~~g  703 (707)
T KOG0263|consen  676 LLLGSFY---TKNTPVVGLHFTRRNLLLAVG  703 (707)
T ss_pred             ceeeeee---ecCceEEEEEEeccceeEEec
Confidence             223333   234578889998877556555

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.1e-39  Score=246.90  Aligned_cols=239  Identities=18%  Similarity=0.284  Sum_probs=215.4

Q ss_pred             ccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceE
Q 023822           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (276)
Q Consensus        25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~  104 (276)
                      ....+|..|++||.++.|+.+|++|++++.|+++.+||..++...+.+..|..+...+.|-.+ ..+++++.   |+.|+
T Consensus       267 ~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~t---d~~i~  342 (524)
T KOG0273|consen  267 NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATSST---DGCIH  342 (524)
T ss_pred             hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC-ceEeecCC---CceEE
Confidence            445678889999999999999999999999999999999999999999999988788999754 45666666   99999


Q ss_pred             EEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCC---------
Q 023822          105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQG---------  173 (276)
Q Consensus       105 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~---------  173 (276)
                      ++.+...+++.++.+|.++|.++.|+|.+.+|++++.|++++||.+....+...+  |...+..+.|+|.+         
T Consensus       343 V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~  422 (524)
T KOG0273|consen  343 VCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMN  422 (524)
T ss_pred             EEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCC
Confidence            9999999999999999999999999999999999999999999999988888877  55567888888864         


Q ss_pred             -cEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCC
Q 023822          174 -LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN  252 (276)
Q Consensus       174 -~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  252 (276)
                       .++.++.|++|++||+..+..    ++.+..|..+|.+++|+|+|+|+|+|+.||.|.+|++++++..+.+.    ..+
T Consensus       423 ~~l~sas~dstV~lwdv~~gv~----i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~----~~~  494 (524)
T KOG0273|consen  423 LMLASASFDSTVKLWDVESGVP----IHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ----GTG  494 (524)
T ss_pred             ceEEEeecCCeEEEEEccCCce----eEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec----CCC
Confidence             355566699999999998765    88888999999999999999999999999999999999999999998    567


Q ss_pred             ceEEEEECCCCcEEEEecCCCCC
Q 023822          253 STLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       253 ~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      .|..++|+.+|.+|..+-.||-|
T Consensus       495 ~Ifel~Wn~~G~kl~~~~sd~~v  517 (524)
T KOG0273|consen  495 GIFELCWNAAGDKLGACASDGSV  517 (524)
T ss_pred             eEEEEEEcCCCCEEEEEecCCCc
Confidence            79999999999999999888865

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.4e-41  Score=254.41  Aligned_cols=242  Identities=16%  Similarity=0.276  Sum_probs=215.5

Q ss_pred             cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeee-eceEEEEEeccCCeEEEeccCCCCCc
Q 023822           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK-YGVDLVCFTSHPTTVIYSSKNGWDES  102 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~d~~  102 (276)
                      +.....++.|+.+|.++.|++++.++++|+.+|.|++|+.. ...+..+..|. ..|++++|+|+...+++++.   |++
T Consensus       128 fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk~~~ahh~eaIRdlafSpnDskF~t~Sd---Dg~  203 (464)
T KOG0284|consen  128 FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSD---DGT  203 (464)
T ss_pred             eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhHHhhHhhhhhhheeccCCCCceeEEecC---CCe
Confidence            44445578999999999999999999999999999999975 44455555554 89999999999999999998   999


Q ss_pred             eEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee
Q 023822          103 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF  180 (276)
Q Consensus       103 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~  180 (276)
                      |+|||....+....+.+|.-.|.+++|+|...++++++.|..|++||.+++.++.++  |.+.+..+.|++++.+|++++
T Consensus       204 ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~s  283 (464)
T KOG0284|consen  204 IKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGS  283 (464)
T ss_pred             EEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEcc
Confidence            999999999998999999999999999999999999999999999999999999999  555677899999999998888


Q ss_pred             -CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCC-CcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEE
Q 023822          181 -GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS  258 (276)
Q Consensus       181 -d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~  258 (276)
                       |..+++||+++.+.    ++...+|...+++++|+|- ..+|.+|+.||.|..|.+...+++..+..  +|...|++++
T Consensus       284 kD~~~kv~DiR~mkE----l~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~--AHd~~iwsl~  357 (464)
T KOG0284|consen  284 KDQSCKVFDIRTMKE----LFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP--AHDGEIWSLA  357 (464)
T ss_pred             CCceEEEEehhHhHH----HHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCc--ccccceeeee
Confidence             99999999997665    7778899999999999995 56788899999999999986666666554  7999999999


Q ss_pred             ECCCCcEEEEecCCCCC
Q 023822          259 FSPEGMFVISGRVSPFS  275 (276)
Q Consensus       259 ~s~~g~~l~~~~~dg~v  275 (276)
                      |+|=|..|++|+.|.++
T Consensus       358 ~hPlGhil~tgsnd~t~  374 (464)
T KOG0284|consen  358 YHPLGHILATGSNDRTV  374 (464)
T ss_pred             ccccceeEeecCCCcce
Confidence            99999999999999875

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.8e-40  Score=229.00  Aligned_cols=240  Identities=20%  Similarity=0.295  Sum_probs=205.0

Q ss_pred             cceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEE
Q 023822           26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL  105 (276)
Q Consensus        26 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~  105 (276)
                      ....+..|+++|..+.|+-+|++.++++.|.+|++|+...+.+++++.+|...|..++.+.|+..+++++.   |..+.+
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~Gg---Dk~v~v   85 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGG---DKAVQV   85 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCC---CceEEE
Confidence            45667899999999999999999999999999999999999999999999999999999999999999988   999999


Q ss_pred             EEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCc--eeeeeEeecCCCeeEecCCCcEEEEee-CC
Q 023822          106 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE--KCQGLLRVQGRPAAAYDDQGLVFAVAF-GG  182 (276)
Q Consensus       106 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~-d~  182 (276)
                      ||+++++..+.+.+|.+.|+.++|+.+...+++|+.|.++++||.++.  ++++.+....-....+.-.+..+++++ ||
T Consensus        86 wDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DG  165 (307)
T KOG0316|consen   86 WDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDG  165 (307)
T ss_pred             EEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCC
Confidence            999999999999999999999999999999999999999999999865  556666332222333333444555555 99


Q ss_pred             eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCC
Q 023822          183 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  262 (276)
Q Consensus       183 ~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~  262 (276)
                      +++.||++.+..    ....  -..+|+++.|+++++..++++.|+++++.|-.+|++++.++.+. ....-...+++..
T Consensus       166 tvRtydiR~G~l----~sDy--~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhk-n~eykldc~l~qs  238 (307)
T KOG0316|consen  166 TVRTYDIRKGTL----SSDY--FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHK-NMEYKLDCCLNQS  238 (307)
T ss_pred             cEEEEEeeccee----ehhh--cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccc-cceeeeeeeeccc
Confidence            999999998764    2222  33489999999999999999999999999999999999999432 2233455678888


Q ss_pred             CcEEEEecCCCCC
Q 023822          263 GMFVISGRVSPFS  275 (276)
Q Consensus       263 g~~l~~~~~dg~v  275 (276)
                      ...+++|++||.|
T Consensus       239 dthV~sgSEDG~V  251 (307)
T KOG0316|consen  239 DTHVFSGSEDGKV  251 (307)
T ss_pred             ceeEEeccCCceE
Confidence            8999999999986

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.3e-39  Score=239.26  Aligned_cols=242  Identities=17%  Similarity=0.258  Sum_probs=221.1

Q ss_pred             hccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCC
Q 023822           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE  101 (276)
Q Consensus        22 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~  101 (276)
                      ..++..+.+++|.+.|.|+++.|-+++|++|+.|++++|||+.+|+...++.+|...|..+++++...++++++.   |+
T Consensus       139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~ge---dk  215 (460)
T KOG0285|consen  139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGE---DK  215 (460)
T ss_pred             CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecC---CC
Confidence            456778889999999999999999999999999999999999999999999999999999999999999999999   99


Q ss_pred             ceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCC-CcEEEE
Q 023822          102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQ-GLVFAV  178 (276)
Q Consensus       102 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~-~~~l~~  178 (276)
                      .|+-||++.++.++.+.+|-..|.+++.+|.-+.|++|++|.++++||+|+...+..+  |..++..+.+.|- .+++.+
T Consensus       216 ~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~  295 (460)
T KOG0285|consen  216 QVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITG  295 (460)
T ss_pred             eeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEe
Confidence            9999999999999999999999999999999999999999999999999999999988  6666778888774 466666


Q ss_pred             eeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEE
Q 023822          179 AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS  258 (276)
Q Consensus       179 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~  258 (276)
                      +.|++|++||++.++.    ...+..|...+.+++.+|....+|+++.| .|+-|++..|..++.+.   +|..-|++++
T Consensus       296 S~D~tvrlWDl~agkt----~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nls---gh~~iintl~  367 (460)
T KOG0285|consen  296 SHDSTVRLWDLRAGKT----MITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLS---GHNAIINTLS  367 (460)
T ss_pred             cCCceEEEeeeccCce----eEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccc---cccceeeeee
Confidence            6699999999999876    67778899999999999999989999888 49999999999999887   7999999999


Q ss_pred             ECCCCcEEEEecCCCCC
Q 023822          259 FSPEGMFVISGRVSPFS  275 (276)
Q Consensus       259 ~s~~g~~l~~~~~dg~v  275 (276)
                      ...|| ++++|+++|.+
T Consensus       368 ~nsD~-v~~~G~dng~~  383 (460)
T KOG0285|consen  368 VNSDG-VLVSGGDNGSI  383 (460)
T ss_pred             eccCc-eEEEcCCceEE
Confidence            98886 67888888864

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2e-39  Score=239.62  Aligned_cols=241  Identities=21%  Similarity=0.332  Sum_probs=221.9

Q ss_pred             ccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccC-CeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA-ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (276)
Q Consensus        25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i  103 (276)
                      +....++||.+.|..++|+..|++|++++.|=.+++||.++ .+++..+.+|+..|.++.|-|.+.++++++.   |.+|
T Consensus       141 ~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~sr---D~ti  217 (406)
T KOG0295|consen  141 ELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSR---DNTI  217 (406)
T ss_pred             hhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeeccc---ccce
Confidence            44678999999999999999999999999999999999986 5677888899999999999999999999999   9999


Q ss_pred             EEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCC---------
Q 023822          104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQ---------  172 (276)
Q Consensus       104 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~---------  172 (276)
                      +.|++.++-++.++.+|...|..++.+.||.++++++.|.+|++|-+.++++...+  +.+++.+++|-|.         
T Consensus       218 k~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~a  297 (406)
T KOG0295|consen  218 KAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEA  297 (406)
T ss_pred             eEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhc
Confidence            99999999999999999999999999999999999999999999999999777666  6677788888652         


Q ss_pred             ------CcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEee
Q 023822          173 ------GLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  245 (276)
Q Consensus       173 ------~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  245 (276)
                            +.++..++ |++|++||+.++..    ++.+.+|...|..++|+|.|+||+++.+|+++++||+++++++..+.
T Consensus       298 t~~~~~~~~l~s~SrDktIk~wdv~tg~c----L~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~  373 (406)
T KOG0295|consen  298 TGSTNGGQVLGSGSRDKTIKIWDVSTGMC----LFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE  373 (406)
T ss_pred             cCCCCCccEEEeecccceEEEEeccCCeE----EEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC
Confidence                  25777777 99999999999876    89999999999999999999999999999999999999999999998


Q ss_pred             cCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          246 VKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       246 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                         .|..-++++.|+.+-.++++|+-|-++
T Consensus       374 ---ah~hfvt~lDfh~~~p~VvTGsVdqt~  400 (406)
T KOG0295|consen  374 ---AHEHFVTSLDFHKTAPYVVTGSVDQTV  400 (406)
T ss_pred             ---CCcceeEEEecCCCCceEEecccccee
Confidence               788999999999999999999988664

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.3e-38  Score=229.91  Aligned_cols=242  Identities=19%  Similarity=0.246  Sum_probs=197.4

Q ss_pred             cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEcc-CCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCc
Q 023822           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVT-AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES  102 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~  102 (276)
                      ..+...+.+|.+.|+.+.|+|+|..||+|+.|..|.+|+.. ..+....+++|.+.|..+.|.++++.+++++.   |.+
T Consensus        37 ~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gt---Dk~  113 (338)
T KOG0265|consen   37 QAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGT---DKT  113 (338)
T ss_pred             cchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecC---Cce
Confidence            45667788999999999999999999999999999999954 44556778899999999999999999999999   999


Q ss_pred             eEEEEccCCceeeeecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee
Q 023822          103 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF  180 (276)
Q Consensus       103 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~  180 (276)
                      ++.||+++++..+.++.|.+.++++.-+.-|. ++.+++.|+++++||+|+...++++ ...+..++.|..++.-+.++.
T Consensus       114 v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sgg  193 (338)
T KOG0265|consen  114 VRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGG  193 (338)
T ss_pred             EEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeecc
Confidence            99999999999999999999999998544444 7788999999999999999988887 445677899988876555555


Q ss_pred             -CCeEEEEecccCCCCCeeeeeecCCCCCceE------------------------------------------------
Q 023822          181 -GGYIRMFDARKYEKGPFDIFSVGGDISDANV------------------------------------------------  211 (276)
Q Consensus       181 -d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~------------------------------------------------  211 (276)
                       |+.|++||++..+.    .+.+.+|..+|+.                                                
T Consensus       194 Idn~ikvWd~r~~d~----~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknl  269 (338)
T KOG0265|consen  194 IDNDIKVWDLRKNDG----LYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNL  269 (338)
T ss_pred             ccCceeeeccccCcc----eEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhc
Confidence             99999999987553    4444444444444                                                


Q ss_pred             --EEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          212 --VKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       212 --~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                        ++|+|+++++.+|+.|..+++||......+..+.   +|.+.|+.++|+|...+|.+++.|.++
T Consensus       270 L~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklp---Gh~gsvn~~~Fhp~e~iils~~sdk~i  332 (338)
T KOG0265|consen  270 LKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLP---GHYGSVNEVDFHPTEPIILSCSSDKTI  332 (338)
T ss_pred             ceeeccCCCCccccccccceEEEeecccccEEEEcC---CcceeEEEeeecCCCcEEEEeccCcee
Confidence              4555555555566666666666655555665555   899999999999999999999999875

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.2e-38  Score=242.78  Aligned_cols=230  Identities=16%  Similarity=0.287  Sum_probs=210.7

Q ss_pred             CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCce
Q 023822           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY  113 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~  113 (276)
                      ...|++++|+.+|..||+|+.||.+++|+. +|..+.++..|+++|.++.|+..|.+|++++.   |+++.+||..++..
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~v---D~ttilwd~~~g~~  310 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGV---DGTTILWDAHTGTV  310 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccC---CccEEEEeccCceE
Confidence            357999999999999999999999999995 68889999999999999999999999999998   99999999999999


Q ss_pred             eeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-CCeEEEEecc
Q 023822          114 LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDAR  190 (276)
Q Consensus       114 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~  190 (276)
                      .+.+.-|..+-..+.|-.+ ..|++++.|+.|+++.+....++.++  |...+.++.|+|.+.+|++++ |+++++|...
T Consensus       311 ~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~  389 (524)
T KOG0273|consen  311 KQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMG  389 (524)
T ss_pred             EEeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecC
Confidence            9999989888788899754 46999999999999999999998888  677799999999999999988 8999999987


Q ss_pred             cCCCCCeeeeeecCCCCCceEEEECCCC---------cEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECC
Q 023822          191 KYEKGPFDIFSVGGDISDANVVKFSNDG---------RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP  261 (276)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~  261 (276)
                      ....    ...+..|...|..+.|+|.|         ..+++++.|++|++||+..+.++..+.   .|..+|.+++|+|
T Consensus       390 ~~~~----~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~---kH~~pVysvafS~  462 (524)
T KOG0273|consen  390 QSNS----VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLM---KHQEPVYSVAFSP  462 (524)
T ss_pred             CCcc----hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeec---cCCCceEEEEecC
Confidence            6554    66778899999999999965         468999999999999999999999998   6999999999999


Q ss_pred             CCcEEEEecCCCCC
Q 023822          262 EGMFVISGRVSPFS  275 (276)
Q Consensus       262 ~g~~l~~~~~dg~v  275 (276)
                      +|+|||+|+.||.|
T Consensus       463 ~g~ylAsGs~dg~V  476 (524)
T KOG0273|consen  463 NGRYLASGSLDGCV  476 (524)
T ss_pred             CCcEEEecCCCCee
Confidence            99999999999975

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.5e-39  Score=236.98  Aligned_cols=246  Identities=17%  Similarity=0.238  Sum_probs=222.6

Q ss_pred             HhhccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCC
Q 023822           20 ILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW   99 (276)
Q Consensus        20 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~   99 (276)
                      -+........+.+|..+|+.+-|+|+-..++++++|++|++||..+++....+++|...+..++|...|+++++++.   
T Consensus        94 wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSs---  170 (406)
T KOG0295|consen   94 WIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSS---  170 (406)
T ss_pred             cCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCC---
Confidence            33444566778899999999999999999999999999999999999999999999999999999999999999998   


Q ss_pred             CCceEEEEccC-CceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEE
Q 023822          100 DESLRLLSLHD-NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVF  176 (276)
Q Consensus       100 d~~i~~~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l  176 (276)
                      |-.+++||..+ .++++.+.+|.-.|.+++|-|.|.+++++++|.+|+.|++.++.+++++  +..-+..+..+.||.++
T Consensus       171 Dl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~  250 (406)
T KOG0295|consen  171 DLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTII  250 (406)
T ss_pred             ccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEE
Confidence            88899999987 5677788899999999999999999999999999999999999999999  44457789999999999


Q ss_pred             EEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCC---------------CcEEEEeecCCcEEEEECCCCcE
Q 023822          177 AVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND---------------GRLMLLTTMEGHIHVLDSFRGTL  240 (276)
Q Consensus       177 ~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------------~~~l~~~~~dg~i~i~d~~~~~~  240 (276)
                      ++++ |.++++|-+.+.+.    ...+..|..++-+++|-|.               ++++.+++.|++|++||+.++.+
T Consensus       251 As~s~dqtl~vW~~~t~~~----k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~c  326 (406)
T KOG0295|consen  251 ASCSNDQTLRVWVVATKQC----KAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMC  326 (406)
T ss_pred             EecCCCceEEEEEeccchh----hhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeE
Confidence            9998 89999999998754    3455678888999998762               35899999999999999999999


Q ss_pred             EEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          241 LSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       241 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      +.++.   +|...|..++|+|.|+||+++.+|+++
T Consensus       327 L~tL~---ghdnwVr~~af~p~Gkyi~ScaDDktl  358 (406)
T KOG0295|consen  327 LFTLV---GHDNWVRGVAFSPGGKYILSCADDKTL  358 (406)
T ss_pred             EEEEe---cccceeeeeEEcCCCeEEEEEecCCcE
Confidence            99999   899999999999999999999999975

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=3.6e-37  Score=237.75  Aligned_cols=247  Identities=17%  Similarity=0.253  Sum_probs=208.4

Q ss_pred             hccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeee---eeeeceEEEEEeccCCeEEEeccCC
Q 023822           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHPTTVIYSSKNG   98 (276)
Q Consensus        22 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~~~   98 (276)
                      ++++...+++.|..-|+|++|+|||+++|+++.||.+.+||-.+++.+..+.   +|++.|.+++|+||++.+++++.  
T Consensus       178 PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa--  255 (603)
T KOG0318|consen  178 PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA--  255 (603)
T ss_pred             CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC--
Confidence            4577888899999999999999999999999999999999999999999997   89999999999999999999998  


Q ss_pred             CCCceEEEEccCCceeee-------------------------------------------ecccCcceEEEEeccCCCE
Q 023822           99 WDESLRLLSLHDNKYLRY-------------------------------------------FKGHHDRVVSLSLCSSKDC  135 (276)
Q Consensus        99 ~d~~i~~~d~~~~~~~~~-------------------------------------------~~~~~~~i~~~~~~~~~~~  135 (276)
                       |.++++||+.+++++++                                           +.+|...|+++..+|++++
T Consensus       256 -Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~  334 (603)
T KOG0318|consen  256 -DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKT  334 (603)
T ss_pred             -CceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCE
Confidence             99999999987544332                                           4579999999999999999


Q ss_pred             EEEeeCCCeEEEEeccCceeeee-------------------------------E-------------------------
Q 023822          136 FISGSLDRTVLLWDQRAEKCQGL-------------------------------L-------------------------  159 (276)
Q Consensus       136 l~~~~~d~~i~iwd~~~~~~~~~-------------------------------~-------------------------  159 (276)
                      |++|+.||.|.-||..++..-+.                               +                         
T Consensus       335 i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~  414 (603)
T KOG0318|consen  335 IYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVL  414 (603)
T ss_pred             EEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEc
Confidence            99999999999999865431100                               0                         


Q ss_pred             -----------------e----------ecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceE
Q 023822          160 -----------------R----------VQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANV  211 (276)
Q Consensus       160 -----------------~----------~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~  211 (276)
                                       +          .....+++++|++..+++|. |+.+++|.+.....  ........|..++++
T Consensus       415 ~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l--~ee~~~~~h~a~iT~  492 (603)
T KOG0318|consen  415 SDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDEL--KEEAKLLEHRAAITD  492 (603)
T ss_pred             CCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcc--cceeeeecccCCceE
Confidence                             0          00112677889998888888 89999999987553  224455678999999


Q ss_pred             EEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          212 VKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       212 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      +++|||+.|||++...+.+.+||..+.+.....-.  -|...|.+++|+|+.+++|+|+-|-.|
T Consensus       493 vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~--FHtakI~~~aWsP~n~~vATGSlDt~V  554 (603)
T KOG0318|consen  493 VAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWA--FHTAKINCVAWSPNNKLVATGSLDTNV  554 (603)
T ss_pred             EEECCCCcEEEEeccCCcEEEEEcccCceecceee--eeeeeEEEEEeCCCceEEEeccccceE
Confidence            99999999999999999999999998887433321  488999999999999999999998654

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=9.4e-38  Score=220.17  Aligned_cols=219  Identities=19%  Similarity=0.286  Sum_probs=193.1

Q ss_pred             CEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCc--eeeeecccCcce
Q 023822           47 SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK--YLRYFKGHHDRV  124 (276)
Q Consensus        47 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~i  124 (276)
                      -+|++++.|.+||+|...+|.+.++++...+.|..+...|+++.|++++    ...|++||+++++  ++.++.+|...|
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~----~qhvRlyD~~S~np~Pv~t~e~h~kNV   86 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG----NQHVRLYDLNSNNPNPVATFEGHTKNV   86 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc----CCeeEEEEccCCCCCceeEEeccCCce
Confidence            4799999999999999999999999999999999999999999999998    7899999998875  588999999999


Q ss_pred             EEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeee
Q 023822          125 VSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSV  202 (276)
Q Consensus       125 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~  202 (276)
                      +++.|..+|+++++|++||+++|||+|...+.+.+ +..+++++..+|+..-|.++. +|.|++||+......   ....
T Consensus        87 taVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~---~~li  163 (311)
T KOG0315|consen   87 TAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT---HELI  163 (311)
T ss_pred             EEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccc---cccC
Confidence            99999999999999999999999999998888877 567899999999887777766 899999999875431   2223


Q ss_pred             cCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcE------EEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          203 GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL------LSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       203 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      +....++.++...|+|.+|+.+...|..++|++.+.+.      +..++   .|.+.+..+.+|||+++||++|.|.+|
T Consensus       164 Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~---ah~~~il~C~lSPd~k~lat~ssdktv  239 (311)
T KOG0315|consen  164 PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQ---AHNGHILRCLLSPDVKYLATCSSDKTV  239 (311)
T ss_pred             CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhee---cccceEEEEEECCCCcEEEeecCCceE
Confidence            44456899999999999999999999999999876543      33444   789999999999999999999999876

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=8.9e-40  Score=244.83  Aligned_cols=232  Identities=16%  Similarity=0.217  Sum_probs=207.3

Q ss_pred             CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCce
Q 023822           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY  113 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~  113 (276)
                      ..+|..+.|.|+|+.|++|+..|.+.+|+.........++.|..+|.++.|++++..++++..   +|.|++|+.+....
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~---gG~iKyWqpnmnnV  172 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDK---GGMIKYWQPNMNNV  172 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCC---CceEEecccchhhh
Confidence            457999999999999999999999999998666656667899999999999999999999998   99999999876554


Q ss_pred             eeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-CCeEEEEecc
Q 023822          114 LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDAR  190 (276)
Q Consensus       114 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~  190 (276)
                      ......|...|++++|+|+...|++|+.||+|+|||....+....+  |.-.+.++.|+|..-++++++ |..|++||.+
T Consensus       173 k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr  252 (464)
T KOG0284|consen  173 KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR  252 (464)
T ss_pred             HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence            4333445589999999999999999999999999999988887777  555689999999988888887 8999999999


Q ss_pred             cCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCC-cEEEEe
Q 023822          191 KYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG-MFVISG  269 (276)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~  269 (276)
                      ++.+    +..+..|...|..+.|+|++++|+++|.|..++++|+++.+.+..++   +|+..++++.|+|-. .+|.+|
T Consensus       253 Sg~c----l~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r---~Hkkdv~~~~WhP~~~~lftsg  325 (464)
T KOG0284|consen  253 SGSC----LATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYR---GHKKDVTSLTWHPLNESLFTSG  325 (464)
T ss_pred             Ccch----hhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhh---cchhhheeeccccccccceeec
Confidence            9887    78888999999999999999999999999999999999999999998   899999999999954 688999


Q ss_pred             cCCCCC
Q 023822          270 RVSPFS  275 (276)
Q Consensus       270 ~~dg~v  275 (276)
                      +.||-|
T Consensus       326 g~Dgsv  331 (464)
T KOG0284|consen  326 GSDGSV  331 (464)
T ss_pred             cCCCce
Confidence            999864

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=2.9e-39  Score=246.73  Aligned_cols=245  Identities=18%  Similarity=0.283  Sum_probs=213.1

Q ss_pred             cccceeeccCCCcEEEEEEcC-CCCEEEEeecCCeEEEEEccC-CeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCC
Q 023822           24 MEVGMSFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTA-ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE  101 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~  101 (276)
                      -+...++.||+..|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|..++|+.++..+++++.   |+
T Consensus       204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sf---D~  280 (503)
T KOG0282|consen  204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASF---DR  280 (503)
T ss_pred             HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeec---ce
Confidence            345678899999999999999 899999999999999999986 8999999999999999999999999999998   99


Q ss_pred             ceEEEEccCCceeeeecccCcceEEEEeccCC-CEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEE
Q 023822          102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAV  178 (276)
Q Consensus       102 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~  178 (276)
                      .|++||+++|++...+. ....++|+.|+|++ +.|++|+.|+.|+.||+|+++.++.+  +...+..+.|-++++.+++
T Consensus       281 ~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFis  359 (503)
T KOG0282|consen  281 FLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFIS  359 (503)
T ss_pred             eeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEee
Confidence            99999999999998886 45678999999998 79999999999999999999988888  7788999999999988887


Q ss_pred             ee-CCeEEEEecccCCCCC------------------------------eeee------------eecCCC--CCceEEE
Q 023822          179 AF-GGYIRMFDARKYEKGP------------------------------FDIF------------SVGGDI--SDANVVK  213 (276)
Q Consensus       179 ~~-d~~i~~~d~~~~~~~~------------------------------~~~~------------~~~~~~--~~i~~~~  213 (276)
                      ++ |+.+++|+.+..-...                              +.++            .+.+|.  +.-..+.
T Consensus       360 sSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~  439 (503)
T KOG0282|consen  360 SSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVD  439 (503)
T ss_pred             eccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEE
Confidence            77 7999999987642100                              0000            111222  2345689


Q ss_pred             ECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCC-cEEEEecCCCCC
Q 023822          214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG-MFVISGRVSPFS  275 (276)
Q Consensus       214 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v  275 (276)
                      |||||.+|++|+.||.+.+||.++-+++..++   .|..++..+.|+|.. ..+|+++.||.|
T Consensus       440 fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk---ah~~~ci~v~wHP~e~Skvat~~w~G~I  499 (503)
T KOG0282|consen  440 FSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK---AHDQPCIGVDWHPVEPSKVATCGWDGLI  499 (503)
T ss_pred             EcCCCCeEEeecCCccEEEeechhhhhhhccc---cCCcceEEEEecCCCcceeEecccCcee
Confidence            99999999999999999999999999999999   789999999999976 689999999976

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=4e-37  Score=251.23  Aligned_cols=242  Identities=25%  Similarity=0.418  Sum_probs=211.6

Q ss_pred             cceeeccC-CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCe--eeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCc
Q 023822           26 VGMSFRDY-NGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES  102 (276)
Q Consensus        26 ~~~~~~~h-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~  102 (276)
                      ....+.+| ...|.++.|+++|+.|++++.|+.+++|+....+  ....+.+|...|.+++|+|+++++++++.   |++
T Consensus       150 ~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~---D~t  226 (456)
T KOG0266|consen  150 LEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSD---DKT  226 (456)
T ss_pred             eeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecC---Cce
Confidence            34445454 7899999999999999999999999999998777  77777899999999999999999999998   999


Q ss_pred             eEEEEc-cCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEe
Q 023822          103 LRLLSL-HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVA  179 (276)
Q Consensus       103 i~~~d~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~  179 (276)
                      |++||+ ..+..++++++|...|++++|+|+++++++|+.|++|++||++++++...+  |...+..++|++++.+++++
T Consensus       227 iriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~  306 (456)
T KOG0266|consen  227 LRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSA  306 (456)
T ss_pred             EEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEc
Confidence            999999 555889999999999999999999999999999999999999999999988  66678899999999999888


Q ss_pred             e-CCeEEEEecccCCCCCeeeeeecCCCC--CceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCC---c
Q 023822          180 F-GGYIRMFDARKYEKGPFDIFSVGGDIS--DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN---S  253 (276)
Q Consensus       180 ~-d~~i~~~d~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~  253 (276)
                      + |+.|++||+.++...  ....+..+..  +++++.|+|+++++++++.|+.+++||+..+..+..+..   |..   .
T Consensus       307 s~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~---~~~~~~~  381 (456)
T KOG0266|consen  307 SYDGTIRVWDLETGSKL--CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTG---HSNLVRC  381 (456)
T ss_pred             CCCccEEEEECCCCcee--eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecc---cCCccee
Confidence            8 999999999987632  1222333333  589999999999999999999999999999999999984   444   4


Q ss_pred             eEEEEECCCCcEEEEecCCCCC
Q 023822          254 TLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       254 v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      +.+...++.++++++|+.|+.|
T Consensus       382 ~~~~~~~~~~~~i~sg~~d~~v  403 (456)
T KOG0266|consen  382 IFSPTLSTGGKLIYSGSEDGSV  403 (456)
T ss_pred             EecccccCCCCeEEEEeCCceE
Confidence            5556668899999999999875

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=4.2e-37  Score=251.13  Aligned_cols=236  Identities=22%  Similarity=0.371  Sum_probs=209.2

Q ss_pred             cceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEc-cCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceE
Q 023822           26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDV-TAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (276)
Q Consensus        26 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~  104 (276)
                      ..+.+.+|...|.+++|+|+++++++++.|++++|||+ ..+..++++.+|...|++++|+|+++.+++++.   |++|+
T Consensus       195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~---D~tvr  271 (456)
T KOG0266|consen  195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSD---DGTVR  271 (456)
T ss_pred             hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecC---CCcEE
Confidence            55666899999999999999999999999999999999 566899999999999999999999999999998   99999


Q ss_pred             EEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCce--eeeeE--e-ec-CCCeeEecCCCcEEEE
Q 023822          105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK--CQGLL--R-VQ-GRPAAAYDDQGLVFAV  178 (276)
Q Consensus       105 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~--~-~~-~~~~~~~~~~~~~l~~  178 (276)
                      +||++++++...+.+|...|.+++|++++++|++++.|+.|++||+.++.  +...+  . .. .+..+.|+|++.++++
T Consensus       272 iWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~  351 (456)
T KOG0266|consen  272 IWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLS  351 (456)
T ss_pred             EEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEE
Confidence            99999999999999999999999999999999999999999999999998  44555  1 22 4689999999999999


Q ss_pred             ee-CCeEEEEecccCCCCCeeeeeecCCCC---CceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCC-CCc
Q 023822          179 AF-GGYIRMFDARKYEKGPFDIFSVGGDIS---DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS-RNS  253 (276)
Q Consensus       179 ~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~  253 (276)
                      +. |+.+++||++....    ......|..   .+.+...++.++++++|+.|+.|++||..++..+..+.   +| ...
T Consensus       352 ~~~d~~~~~w~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~---~h~~~~  424 (456)
T KOG0266|consen  352 ASLDRTLKLWDLRSGKS----VGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE---GHSKAA  424 (456)
T ss_pred             ecCCCeEEEEEccCCcc----eeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhc---CCCCCc
Confidence            88 78999999998665    333444444   34445567899999999999999999999999999998   67 889


Q ss_pred             eEEEEECCCCcEEEEecC
Q 023822          254 TLEASFSPEGMFVISGRV  271 (276)
Q Consensus       254 v~~~~~s~~g~~l~~~~~  271 (276)
                      +..++++|...++++++.
T Consensus       425 ~~~~~~~~~~~~~~s~s~  442 (456)
T KOG0266|consen  425 VSDLSSHPTENLIASSSF  442 (456)
T ss_pred             eeccccCCCcCeeeecCc
Confidence            999999999999999983

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=5.5e-36  Score=213.56  Aligned_cols=238  Identities=14%  Similarity=0.283  Sum_probs=200.0

Q ss_pred             cccceeeccCCCcEEEEEEcCC-CCEEEEeecCCeEEEEEccC---Ceeeeee-eeeeeceEEEEEeccCCeEEEeccCC
Q 023822           24 MEVGMSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTA---ATCLKTI-NSKKYGVDLVCFTSHPTTVIYSSKNG   98 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~---~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~~   98 (276)
                      +...+.+++|++++..++|+|- |..||+++.|+.|++|+...   ..+...+ .+|+..|..++|+|.+++|++++.  
T Consensus         4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSF--   81 (312)
T KOG0645|consen    4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASF--   81 (312)
T ss_pred             ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeec--
Confidence            4556788999999999999997 88999999999999999874   3333333 468889999999999999999998  


Q ss_pred             CCCceEEEEccCC--ceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCc---eeeeeE--eecCCCeeEecC
Q 023822           99 WDESLRLLSLHDN--KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE---KCQGLL--RVQGRPAAAYDD  171 (276)
Q Consensus        99 ~d~~i~~~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~--~~~~~~~~~~~~  171 (276)
                       |.++.||.-..+  +++.++.+|...|.+++|+++|++||+|++|.+|-+|.+...   ++...+  |.+.+..+.|+|
T Consensus        82 -D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP  160 (312)
T KOG0645|consen   82 -DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP  160 (312)
T ss_pred             -cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC
Confidence             999999986644  678899999999999999999999999999999999998854   344444  777899999999


Q ss_pred             CCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCC
Q 023822          172 QGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS  250 (276)
Q Consensus       172 ~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  250 (276)
                      ...+|++++ |++|++|+-... ..-.....+.+|...|.+++|+|.|..|++++.|++++||...+     .+..  .|
T Consensus       161 t~dlL~S~SYDnTIk~~~~~~d-ddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-----~~~~--~~  232 (312)
T KOG0645|consen  161 TEDLLFSCSYDNTIKVYRDEDD-DDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-----DLSG--MH  232 (312)
T ss_pred             CcceeEEeccCCeEEEEeecCC-CCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc-----Ccch--hc
Confidence            888877777 999999987742 22334667888999999999999999999999999999998652     2221  37


Q ss_pred             CCceEEEEECCCCcEEEEecCCCC
Q 023822          251 RNSTLEASFSPEGMFVISGRVSPF  274 (276)
Q Consensus       251 ~~~v~~~~~s~~g~~l~~~~~dg~  274 (276)
                      ..++..+.|.  ...|++++.|+.
T Consensus       233 sr~~Y~v~W~--~~~IaS~ggD~~  254 (312)
T KOG0645|consen  233 SRALYDVPWD--NGVIASGGGDDA  254 (312)
T ss_pred             ccceEeeeec--ccceEeccCCCE
Confidence            7889999998  457888888864

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=5.6e-36  Score=232.14  Aligned_cols=238  Identities=26%  Similarity=0.419  Sum_probs=212.8

Q ss_pred             eeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEE
Q 023822           28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS  107 (276)
Q Consensus        28 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d  107 (276)
                      +++++|.++|++++|+|++++|++++.||.+++|++.+++....+..|...+..+.|+|+++.+++++.   ++.|++|+
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---~~~i~i~~   79 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS---DKTIRLWD   79 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcC---CCeEEEEE
Confidence            567799999999999999999999999999999999988888888888889999999999999999998   99999999


Q ss_pred             ccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe--ecCCCeeEecCCCcEEEEee-CCeE
Q 023822          108 LHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR--VQGRPAAAYDDQGLVFAVAF-GGYI  184 (276)
Q Consensus       108 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~-d~~i  184 (276)
                      +.+++....+..|...+.++.|+++++++++++.|+.|.+||+++.+....+.  ...+.++.++|++.+++++. ++.|
T Consensus        80 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i  159 (289)
T cd00200          80 LETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTI  159 (289)
T ss_pred             cCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcE
Confidence            99988888888899999999999998888888889999999999888777774  44578999999999999998 9999


Q ss_pred             EEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCc
Q 023822          185 RMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM  264 (276)
Q Consensus       185 ~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  264 (276)
                      ++||++..+.    ...+..+...+.++.|+|+++.+++++.|+.|++||+.+++.+..+.   .+...+.+++|+|++.
T Consensus       160 ~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~  232 (289)
T cd00200         160 KLWDLRTGKC----VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR---GHENGVNSVAFSPDGY  232 (289)
T ss_pred             EEEEcccccc----ceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchh---hcCCceEEEEEcCCCc
Confidence            9999986553    34445677789999999999999999999999999999999988886   5778999999999999


Q ss_pred             EEEEecCCCCC
Q 023822          265 FVISGRVSPFS  275 (276)
Q Consensus       265 ~l~~~~~dg~v  275 (276)
                      ++++++.||.+
T Consensus       233 ~~~~~~~~~~i  243 (289)
T cd00200         233 LLASGSEDGTI  243 (289)
T ss_pred             EEEEEcCCCcE
Confidence            99998878764

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-36  Score=215.81  Aligned_cols=240  Identities=16%  Similarity=0.200  Sum_probs=211.6

Q ss_pred             eeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEc
Q 023822           29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL  108 (276)
Q Consensus        29 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~  108 (276)
                      .++||..+++.+.|+.+|.+|.+++.|.+..||-..+|+.+.++.+|.+.|+++....+.+++++++.   |.++++||+
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSA---D~t~kLWDv   81 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSA---DQTAKLWDV   81 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccc---cceeEEEEc
Confidence            47899999999999999999999999999999999899999999999999999999999999999999   999999999


Q ss_pred             cCCceeeeecccCcceEEEEeccCCCEEEEeeC-----CCeEEEEecc-------CceeeeeE--eecCCCeeEecCCCc
Q 023822          109 HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-----DRTVLLWDQR-------AEKCQGLL--RVQGRPAAAYDDQGL  174 (276)
Q Consensus       109 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----d~~i~iwd~~-------~~~~~~~~--~~~~~~~~~~~~~~~  174 (276)
                      ++|+.+..++ ...+|..+.|+++|++++.+..     .+.|.++|++       ..++...+  +...+..+.|.|-++
T Consensus        82 ~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~  160 (327)
T KOG0643|consen   82 ETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE  160 (327)
T ss_pred             CCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC
Confidence            9999999987 6788999999999998877664     3579999998       34444444  456678899999999


Q ss_pred             EEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecC------
Q 023822          175 VFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK------  247 (276)
Q Consensus       175 ~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------  247 (276)
                      .++++. ||.|..||.+++..   .+.....|...|+.++++|+..++++++.|.+-++||..+-+.++++...      
T Consensus       161 ~ii~Ghe~G~is~~da~~g~~---~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~a  237 (327)
T KOG0643|consen  161 TIIAGHEDGSISIYDARTGKE---LVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTA  237 (327)
T ss_pred             EEEEecCCCcEEEEEcccCce---eeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccce
Confidence            888888 89999999998653   23445678889999999999999999999999999999887777765432      


Q ss_pred             ----------------------------------------------CCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          248 ----------------------------------------------PVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       248 ----------------------------------------------~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                                                                    .+|-++|++++|+|+|+..++|++||+|
T Consensus       238 aisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~V  311 (327)
T KOG0643|consen  238 AISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYV  311 (327)
T ss_pred             ecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceE
Confidence                                                          1688999999999999999999999987

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.1e-36  Score=219.32  Aligned_cols=205  Identities=19%  Similarity=0.317  Sum_probs=189.4

Q ss_pred             hccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEec-cCCeEEEeccCCCC
Q 023822           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTS-HPTTVIYSSKNGWD  100 (276)
Q Consensus        22 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~d  100 (276)
                      ...+..+.+.+|++-+.|+.|-+| ..|+|++.|.+..+||+++++.+..+.+|.+.|.++.++| +++.+++++.   |
T Consensus       133 g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~c---D  208 (343)
T KOG0286|consen  133 GNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGC---D  208 (343)
T ss_pred             ccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccc---c
Confidence            344566789999999999999985 5788999999999999999999999999999999999999 9999999998   9


Q ss_pred             CceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe----ecCCCeeEecCCCcEE
Q 023822          101 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR----VQGRPAAAYDDQGLVF  176 (276)
Q Consensus       101 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~l  176 (276)
                      +..++||++.+..+++|.+|...|++++|.|+|.-|++|+.|++.++||+|..+.+..+.    ..++.+++|+..|++|
T Consensus       209 ~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlL  288 (343)
T KOG0286|consen  209 KSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLL  288 (343)
T ss_pred             cceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEE
Confidence            999999999999999999999999999999999999999999999999999998888873    3457799999999999


Q ss_pred             EEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEE
Q 023822          177 AVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD  234 (276)
Q Consensus       177 ~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  234 (276)
                      .++. |.++.+||.-.++.    .-.+.+|...|+++..+|||..+++|+-|..++||.
T Consensus       289 fagy~d~~c~vWDtlk~e~----vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  289 FAGYDDFTCNVWDTLKGER----VGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             EeeecCCceeEeeccccce----EEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            8887 89999999877665    667889999999999999999999999999999994

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.9e-37  Score=241.15  Aligned_cols=241  Identities=19%  Similarity=0.319  Sum_probs=221.2

Q ss_pred             ccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceE
Q 023822           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (276)
Q Consensus        25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~  104 (276)
                      +..+++..|+.+|.++.|+|...+++++-.+|.|.|||.++...+..+...+.+|....|-+..+.+++|+.   |..|+
T Consensus         4 ~~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsD---D~~Ir   80 (794)
T KOG0276|consen    4 DFKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSD---DMQIR   80 (794)
T ss_pred             hhhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecC---CceEE
Confidence            444567779999999999999999999999999999999999999999999999999999999999999998   99999


Q ss_pred             EEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCc-eeeeeE--eecCCCeeEecCCC-cEEEEee
Q 023822          105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE-KCQGLL--RVQGRPAAAYDDQG-LVFAVAF  180 (276)
Q Consensus       105 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~--~~~~~~~~~~~~~~-~~l~~~~  180 (276)
                      +|+.++++.+..+..|.+.|.+++.+|...++++++.|-+|++||.+.. .+.+++  |.+-+.+++|+|.. ..+++++
T Consensus        81 Vfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~s  160 (794)
T KOG0276|consen   81 VFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASAS  160 (794)
T ss_pred             EEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeee
Confidence            9999999999999999999999999999999999999999999999865 555666  66668899999954 5666666


Q ss_pred             -CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCC--cEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEE
Q 023822          181 -GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG--RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA  257 (276)
Q Consensus       181 -d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~  257 (276)
                       |++|++|.+.+...    .+++.+|...|+++.+-+.|  .+|++|+.|..|+|||.++..+++++.   +|...|..+
T Consensus       161 LDrTVKVWslgs~~~----nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLe---GHt~Nvs~v  233 (794)
T KOG0276|consen  161 LDRTVKVWSLGSPHP----NFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLE---GHTNNVSFV  233 (794)
T ss_pred             ccccEEEEEcCCCCC----ceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhh---cccccceEE
Confidence             99999999987655    78888999999999999865  799999999999999999999999999   899999999


Q ss_pred             EECCCCcEEEEecCCCCC
Q 023822          258 SFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       258 ~~s~~g~~l~~~~~dg~v  275 (276)
                      .|+|.-..+++||+||+|
T Consensus       234 ~fhp~lpiiisgsEDGTv  251 (794)
T KOG0276|consen  234 FFHPELPIIISGSEDGTV  251 (794)
T ss_pred             EecCCCcEEEEecCCccE
Confidence            999999999999999997

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.8e-35  Score=218.88  Aligned_cols=242  Identities=13%  Similarity=0.215  Sum_probs=213.3

Q ss_pred             cceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEE
Q 023822           26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL  105 (276)
Q Consensus        26 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~  105 (276)
                      ...+|..|+++|.+++.+|+.++++||+.|..-.+|++.++.....+.+|+..|+++.|+.++.+|+++..   +|.|++
T Consensus        56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdm---sG~v~v  132 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDM---SGKVLV  132 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCC---CccEEE
Confidence            45778999999999999999999999999999999999999999999999999999999999999999998   999999


Q ss_pred             EEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-CC
Q 023822          106 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-GG  182 (276)
Q Consensus       106 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d~  182 (276)
                      |+..++.....+...-..|.=+.|+|.+..|+.|+.||.+.+|.+.++...+.+  +..+..+-.|.|+|+.++++. ||
T Consensus       133 ~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dg  212 (399)
T KOG0296|consen  133 FKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDG  212 (399)
T ss_pred             EEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCc
Confidence            999999988888766777888999999999999999999999999997766776  455566788999999888888 89


Q ss_pred             eEEEEecccCCCCC------------------------------------------------------------------
Q 023822          183 YIRMFDARKYEKGP------------------------------------------------------------------  196 (276)
Q Consensus       183 ~i~~~d~~~~~~~~------------------------------------------------------------------  196 (276)
                      +|++|++.++....                                                                  
T Consensus       213 ti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~  292 (399)
T KOG0296|consen  213 TIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESI  292 (399)
T ss_pred             eEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhc
Confidence            99999998754100                                                                  


Q ss_pred             -----------------ee--------eeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCC
Q 023822          197 -----------------FD--------IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR  251 (276)
Q Consensus       197 -----------------~~--------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  251 (276)
                                       +.        ....-.|..+|..+.|-+ ..+|++++.+|.|+.||.++|+++..+.   +|.
T Consensus       293 ~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~---GH~  368 (399)
T KOG0296|consen  293 PSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYT---GHQ  368 (399)
T ss_pred             ccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEe---cCc
Confidence                             00        000111667788899988 6789999999999999999999999999   899


Q ss_pred             CceEEEEECCCCcEEEEecCCCC
Q 023822          252 NSTLEASFSPEGMFVISGRVSPF  274 (276)
Q Consensus       252 ~~v~~~~~s~~g~~l~~~~~dg~  274 (276)
                      ..|.+++++|++++++++|.|++
T Consensus       369 ~~Il~f~ls~~~~~vvT~s~D~~  391 (399)
T KOG0296|consen  369 MGILDFALSPQKRLVVTVSDDNT  391 (399)
T ss_pred             hheeEEEEcCCCcEEEEecCCCe
Confidence            99999999999999999999986

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.4e-36  Score=241.36  Aligned_cols=243  Identities=14%  Similarity=0.238  Sum_probs=217.7

Q ss_pred             hccccceeeccCCCcEEEEEEcCCCCEEEEeecC-CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCC
Q 023822           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDD-ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD  100 (276)
Q Consensus        22 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d  100 (276)
                      +.+..++.+.--..+|..++|+..|.+||.|+.. |.+.||++.+..-+...++|...+.+++++|||+.+++|+.   |
T Consensus       295 P~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~e---D  371 (893)
T KOG0291|consen  295 PDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAE---D  371 (893)
T ss_pred             CCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccC---C
Confidence            4556667777777899999999999999988754 89999999998888888999999999999999999999999   9


Q ss_pred             CceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecC---CCeeEecCCCcEEE
Q 023822          101 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG---RPAAAYDDQGLVFA  177 (276)
Q Consensus       101 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~l~  177 (276)
                      |.|++||..++-+..++..|+..|+.+.|+..++.+++++.||+|+.||+...+..+++..+.   ..+++.+|.|.+++
T Consensus       372 gKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~  451 (893)
T KOG0291|consen  372 GKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVC  451 (893)
T ss_pred             CcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEE
Confidence            999999999999999999999999999999999999999999999999999999988884332   45889999999998


Q ss_pred             Eee-C-CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCC-cEEEEeecCCCCCCce
Q 023822          178 VAF-G-GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG-TLLSTYNVKPVSRNST  254 (276)
Q Consensus       178 ~~~-d-~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v  254 (276)
                      +|. | =.|.+|++++++.    +-.+.+|.+||.+++|+|.|..|+++|.|.+|++||+-.. ....++.    +...+
T Consensus       452 AG~~d~F~IfvWS~qTGql----lDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~----i~sdv  523 (893)
T KOG0291|consen  452 AGAQDSFEIFVWSVQTGQL----LDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE----IRSDV  523 (893)
T ss_pred             eeccceEEEEEEEeecCee----eehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe----eccce
Confidence            888 5 6799999999886    6678899999999999999999999999999999998654 3445555    67889


Q ss_pred             EEEEECCCCcEEEEecCCCCC
Q 023822          255 LEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       255 ~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      ..++|+|||+-|++++.||.+
T Consensus       524 l~vsfrPdG~elaVaTldgqI  544 (893)
T KOG0291|consen  524 LAVSFRPDGKELAVATLDGQI  544 (893)
T ss_pred             eEEEEcCCCCeEEEEEecceE
Confidence            999999999999999999864

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.1e-35  Score=238.45  Aligned_cols=243  Identities=17%  Similarity=0.311  Sum_probs=209.5

Q ss_pred             cceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEE
Q 023822           26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL  105 (276)
Q Consensus        26 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~  105 (276)
                      .+...++|...+++++++|||+++|+|+.||.|+|||..++-|..++..|...|+.+.|+..++.+++++-   ||+|+.
T Consensus       342 YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSL---DGtVRA  418 (893)
T KOG0291|consen  342 YVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSL---DGTVRA  418 (893)
T ss_pred             eeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeec---CCeEEe
Confidence            34567899999999999999999999999999999999999999999999999999999999999999998   999999


Q ss_pred             EEccCCceeeeeccc-CcceEEEEeccCCCEEEEeeCCC-eEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-
Q 023822          106 LSLHDNKYLRYFKGH-HDRVVSLSLCSSKDCFISGSLDR-TVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-  180 (276)
Q Consensus       106 ~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-  180 (276)
                      ||+...+..+++... +....|++..|.|..+.+|+.|. .|++|++++++.+..+  |..++.+++|+|.+..|++++ 
T Consensus       419 wDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SW  498 (893)
T KOG0291|consen  419 WDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSW  498 (893)
T ss_pred             eeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccc
Confidence            999999888888643 34567889999999999999887 5999999999999888  777888999999999999998 


Q ss_pred             CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecC-------------
Q 023822          181 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK-------------  247 (276)
Q Consensus       181 d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------  247 (276)
                      |.+|++||+-....    ....-.+...+..++|+|+|+.|++++.||.|.+||...+..+..+...             
T Consensus       499 DkTVRiW~if~s~~----~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~  574 (893)
T KOG0291|consen  499 DKTVRIWDIFSSSG----TVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRI  574 (893)
T ss_pred             cceEEEEEeeccCc----eeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhcccccccccee
Confidence            99999999866432    2222234567999999999999999999999999999877666444311             


Q ss_pred             ----CCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          248 ----PVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       248 ----~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                          .......+.+++++||..+++||....+
T Consensus       575 ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~i  606 (893)
T KOG0291|consen  575 TAENSAKGKTFTTICYSADGKCILAGGESNSI  606 (893)
T ss_pred             ehhhcccCCceEEEEEcCCCCEEEecCCcccE
Confidence                1223578999999999999999988764

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.7e-36  Score=231.93  Aligned_cols=243  Identities=19%  Similarity=0.309  Sum_probs=213.3

Q ss_pred             ccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceE
Q 023822           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (276)
Q Consensus        25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~  104 (276)
                      ...+++...+..|+++.|..||++||+|...|.|+|||..+...++.+..|..++..+.|+|+++.+++.+.+  |+.++
T Consensus        59 ~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sD--d~v~k  136 (487)
T KOG0310|consen   59 SVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSD--DKVVK  136 (487)
T ss_pred             hhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCC--CceEE
Confidence            3344455667889999999999999999999999999977767788899999999999999977655544442  89999


Q ss_pred             EEEccCCceeeeecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCc-eeeeeE-eecCCCeeEecCCCcEEEEeeC
Q 023822          105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAE-KCQGLL-RVQGRPAAAYDDQGLVFAVAFG  181 (276)
Q Consensus       105 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~-~~~~~~-~~~~~~~~~~~~~~~~l~~~~d  181 (276)
                      +||+.+......+.+|++.|.|.+|+|... ++++|++||+|++||++.. ..+.++ +..++..+.+-|.|.+++++..
T Consensus       137 ~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG  216 (487)
T KOG0310|consen  137 YWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG  216 (487)
T ss_pred             EEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC
Confidence            999999887668999999999999999654 8999999999999999987 566666 7888999999999999999999


Q ss_pred             CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECC
Q 023822          182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP  261 (276)
Q Consensus       182 ~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~  261 (276)
                      ..+++||+.++.+.   +.....|...|+|+.+..++..|++++-|+.|++||+.+.+.+..+.    ..++|.+++.+|
T Consensus       217 n~vkVWDl~~G~ql---l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~----~~~pvLsiavs~  289 (487)
T KOG0310|consen  217 NSVKVWDLTTGGQL---LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK----YPGPVLSIAVSP  289 (487)
T ss_pred             CeEEEEEecCCcee---hhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee----cccceeeEEecC
Confidence            99999999976542   34445588999999999999999999999999999999999999997    789999999999


Q ss_pred             CCcEEEEecCCCCCC
Q 023822          262 EGMFVISGRVSPFSS  276 (276)
Q Consensus       262 ~g~~l~~~~~dg~vs  276 (276)
                      +++.++.|..||.++
T Consensus       290 dd~t~viGmsnGlv~  304 (487)
T KOG0310|consen  290 DDQTVVIGMSNGLVS  304 (487)
T ss_pred             CCceEEEecccceee
Confidence            999999999999875

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.7e-36  Score=226.74  Aligned_cols=245  Identities=18%  Similarity=0.245  Sum_probs=195.3

Q ss_pred             cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCC---eeeeeeeeeeeceEEEEEeccCCeEEEeccCCCC
Q 023822           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA---TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD  100 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d  100 (276)
                      .+..+.+..|+..|.-+.||++|++||+++.|.+..+|++...   +...++.+|..+|..+.|+||.+++++++.   +
T Consensus       214 ~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~---~  290 (519)
T KOG0293|consen  214 SQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGF---D  290 (519)
T ss_pred             chhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCc---h
Confidence            3445678899999999999999999999999999999988644   457788899999999999999999999998   8


Q ss_pred             CceEEEEccCCceeeeec-ccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE---eecCCCeeEecCCCcEE
Q 023822          101 ESLRLLSLHDNKYLRYFK-GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL---RVQGRPAAAYDDQGLVF  176 (276)
Q Consensus       101 ~~i~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~l  176 (276)
                      ..+.+||+.++.....+. ++...+.+++|.|||..+++|+.|+.+..||++... ....   +...+.++++.+||+.+
T Consensus       291 e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~v  369 (519)
T KOG0293|consen  291 EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYV  369 (519)
T ss_pred             HheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEE
Confidence            899999999998877664 345789999999999999999999999999988654 2222   34457789999999877


Q ss_pred             EEee-CCeEEEEecccCCCC-------Ceeee------------------------------eecCCCCC--ceEEEECC
Q 023822          177 AVAF-GGYIRMFDARKYEKG-------PFDIF------------------------------SVGGDISD--ANVVKFSN  216 (276)
Q Consensus       177 ~~~~-d~~i~~~d~~~~~~~-------~~~~~------------------------------~~~~~~~~--i~~~~~~~  216 (276)
                      .... |..|++|+.++....       ++..+                              ...+|...  +..-+|--
T Consensus       370 l~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg  449 (519)
T KOG0293|consen  370 LLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGG  449 (519)
T ss_pred             EEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCC
Confidence            6655 899999987653321       11000                              01111111  11112222


Q ss_pred             -CCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCC-cEEEEecCCCCC
Q 023822          217 -DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG-MFVISGRVSPFS  275 (276)
Q Consensus       217 -~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v  275 (276)
                       +..++++||+|+.|+||+..+|+++..+.   ||...|++++|+|.. .++|+||+||+|
T Consensus       450 ~~~~fiaSGSED~kvyIWhr~sgkll~~Ls---GHs~~vNcVswNP~~p~m~ASasDDgtI  507 (519)
T KOG0293|consen  450 GNDKFIASGSEDSKVYIWHRISGKLLAVLS---GHSKTVNCVSWNPADPEMFASASDDGTI  507 (519)
T ss_pred             CCcceEEecCCCceEEEEEccCCceeEeec---CCcceeeEEecCCCCHHHhhccCCCCeE
Confidence             33589999999999999999999999999   899999999999966 679999999986

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.6e-34  Score=224.03  Aligned_cols=240  Identities=25%  Similarity=0.411  Sum_probs=211.7

Q ss_pred             cceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEE
Q 023822           26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL  105 (276)
Q Consensus        26 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~  105 (276)
                      ....+..|...+..+.|+|++++|++++.||.|++|++.+++....+..|...+.++.|+++++.+++++.   ++.|.+
T Consensus        43 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~i~~  119 (289)
T cd00200          43 LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSR---DKTIKV  119 (289)
T ss_pred             cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecC---CCeEEE
Confidence            45667789999999999999999999999999999999988888888888889999999999888888887   999999


Q ss_pred             EEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe--ecCCCeeEecCCCcEEEEee-CC
Q 023822          106 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR--VQGRPAAAYDDQGLVFAVAF-GG  182 (276)
Q Consensus       106 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~-d~  182 (276)
                      ||+.+++....+..|...+.+++|+|++.++++++.|+.|++||++..+....+.  ...+.++.|+|++..++++. ++
T Consensus       120 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~  199 (289)
T cd00200         120 WDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDG  199 (289)
T ss_pred             EECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCC
Confidence            9999888888888899999999999998888888889999999999888777763  34588999999996665555 99


Q ss_pred             eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCC
Q 023822          183 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  262 (276)
Q Consensus       183 ~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~  262 (276)
                      .|++||++..+.    ...+..+...+.+++|+|++.++++++.||.|++||+.+++....+.   .|...+.+++|+|+
T Consensus       200 ~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~---~~~~~i~~~~~~~~  272 (289)
T cd00200         200 TIKLWDLSTGKC----LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS---GHTNSVTSLAWSPD  272 (289)
T ss_pred             cEEEEECCCCce----ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc---ccCCcEEEEEECCC
Confidence            999999987543    34444677799999999998888888889999999999999888887   68889999999999


Q ss_pred             CcEEEEecCCCCC
Q 023822          263 GMFVISGRVSPFS  275 (276)
Q Consensus       263 g~~l~~~~~dg~v  275 (276)
                      +++|++++.||.+
T Consensus       273 ~~~l~~~~~d~~i  285 (289)
T cd00200         273 GKRLASGSADGTI  285 (289)
T ss_pred             CCEEEEecCCCeE
Confidence            9999999999875

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.1e-36  Score=243.03  Aligned_cols=250  Identities=22%  Similarity=0.315  Sum_probs=202.0

Q ss_pred             Hhhccccceeec-cCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccC---------------------------------
Q 023822           20 ILQSMEVGMSFR-DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA---------------------------------   65 (276)
Q Consensus        20 ~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~---------------------------------   65 (276)
                      .+..+...+.+. .|.+.|.++.|++||+|||+|++|+.|+||.+..                                 
T Consensus       252 elsal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~  331 (712)
T KOG0283|consen  252 ELSALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEK  331 (712)
T ss_pred             cceeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccc
Confidence            334455566677 8999999999999999999999999999998754                                 


Q ss_pred             ---------------------------CeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeec
Q 023822           66 ---------------------------ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFK  118 (276)
Q Consensus        66 ---------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~  118 (276)
                                                 .+++..+.+|.+.|.++.|+. +.+|++++.   |.+|++|++...+++..|.
T Consensus       332 ~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSM---DKTVRLWh~~~~~CL~~F~  407 (712)
T KOG0283|consen  332 ISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSM---DKTVRLWHPGRKECLKVFS  407 (712)
T ss_pred             ccccccccccccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccc---cccEEeecCCCcceeeEEe
Confidence                                       012334567888999999995 567888888   9999999999999999887


Q ss_pred             ccCcceEEEEecc-CCCEEEEeeCCCeEEEEeccCceeeeeEe-ecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCC
Q 023822          119 GHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLR-VQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKG  195 (276)
Q Consensus       119 ~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~  195 (276)
                       |.+.|+|++|+| |.++|++|+-|++|+||++...+...-.. ..-++.++|.|+|+..++|+ +|.+++|+....+..
T Consensus       408 -HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~  486 (712)
T KOG0283|consen  408 -HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLV  486 (712)
T ss_pred             -cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEE
Confidence             999999999999 67799999999999999999888776653 35588999999999998888 999999999875432


Q ss_pred             Ceeeeeec----CCCCCceEEEECCCC-cEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEec
Q 023822          196 PFDIFSVG----GDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGR  270 (276)
Q Consensus       196 ~~~~~~~~----~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  270 (276)
                      ........    .....|+.+.|.|.. ..+++.+.|..|||||.++.+++..|+... ....-....|+.||++|++++
T Consensus       487 ~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~-n~~SQ~~Asfs~Dgk~IVs~s  565 (712)
T KOG0283|consen  487 SDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFR-NTSSQISASFSSDGKHIVSAS  565 (712)
T ss_pred             EeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccc-cCCcceeeeEccCCCEEEEee
Confidence            11111111    112379999999854 357888899999999999999999988544 233445679999999999999


Q ss_pred             CCCCC
Q 023822          271 VSPFS  275 (276)
Q Consensus       271 ~dg~v  275 (276)
                      +|..|
T Consensus       566 eDs~V  570 (712)
T KOG0283|consen  566 EDSWV  570 (712)
T ss_pred             cCceE
Confidence            99765

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=6.9e-37  Score=216.10  Aligned_cols=239  Identities=18%  Similarity=0.303  Sum_probs=215.1

Q ss_pred             ccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceE
Q 023822           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (276)
Q Consensus        25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~  104 (276)
                      .-+-+|.||.+.|.+...+.+...-|+++.|-+-++||.-+|..+..+. |+.-|..++|+.|.++|++++.   +..++
T Consensus        50 dwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~---ekllr  125 (334)
T KOG0278|consen   50 DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQ---EKLLR  125 (334)
T ss_pred             CcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccch---HHHhh
Confidence            4467899999999999999998889999999999999999999888875 6668999999999999999998   99999


Q ss_pred             EEEccCCc-eeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEeeCC
Q 023822          105 LLSLHDNK-YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAFGG  182 (276)
Q Consensus       105 ~~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~d~  182 (276)
                      +||++..+ +...+.+|.+.|..+.|....+.+++.+.|++|++||.+++..++.+ ...++.++.++++|++++.+..+
T Consensus       126 vfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gs  205 (334)
T KOG0278|consen  126 VFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGS  205 (334)
T ss_pred             hhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCc
Confidence            99998764 56678899999999999998899999999999999999999999988 45678899999999999999999


Q ss_pred             eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEe-ecCCCCCCceEEEEECC
Q 023822          183 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY-NVKPVSRNSTLEASFSP  261 (276)
Q Consensus       183 ~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~v~~~~~s~  261 (276)
                      .|.+||..+...     .....-+..|.+..++|+...+++|++|..++.||..+++.+..+ +   +|.++|.++.|+|
T Consensus       206 sV~Fwdaksf~~-----lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nk---gh~gpVhcVrFSP  277 (334)
T KOG0278|consen  206 SVKFWDAKSFGL-----LKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNK---GHFGPVHCVRFSP  277 (334)
T ss_pred             eeEEeccccccc-----eeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeeccc---CCCCceEEEEECC
Confidence            999999988653     222234557899999999999999999999999999999999886 4   7999999999999


Q ss_pred             CCcEEEEecCCCCC
Q 023822          262 EGMFVISGRVSPFS  275 (276)
Q Consensus       262 ~g~~l~~~~~dg~v  275 (276)
                      ||...++||+||++
T Consensus       278 dGE~yAsGSEDGTi  291 (334)
T KOG0278|consen  278 DGELYASGSEDGTI  291 (334)
T ss_pred             CCceeeccCCCceE
Confidence            99999999999986

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=5.8e-34  Score=232.12  Aligned_cols=227  Identities=17%  Similarity=0.254  Sum_probs=183.7

Q ss_pred             eeccCCCcEEEEEEcC-CCCEEEEeecCCeEEEEEccCC-------eeeeeeeeeeeceEEEEEeccC-CeEEEeccCCC
Q 023822           29 SFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAA-------TCLKTINSKKYGVDLVCFTSHP-TTVIYSSKNGW   99 (276)
Q Consensus        29 ~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~   99 (276)
                      .+.+|.++|++++|+| ++++|++|+.|++|++||+.++       +++..+.+|...|.+++|+|++ ..|++++.   
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~---  146 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA---  146 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeC---
Confidence            4789999999999999 8899999999999999999765       3466788999999999999986 68888887   


Q ss_pred             CCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecC---CCeeEecCCCcE-
Q 023822          100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG---RPAAAYDDQGLV-  175 (276)
Q Consensus       100 d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~-  175 (276)
                      |+.|++||+++++....+..|...|.+++|+|++++|++++.|++|++||+++++.+..+..+.   ...+.|.+++.. 
T Consensus       147 DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~i  226 (493)
T PTZ00421        147 DMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI  226 (493)
T ss_pred             CCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeE
Confidence            9999999999999999999999999999999999999999999999999999998877774332   235677777654 


Q ss_pred             EEEee----CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEee-cCCcEEEEECCCCcEEEEeecCCCC
Q 023822          176 FAVAF----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGTLLSTYNVKPVS  250 (276)
Q Consensus       176 l~~~~----d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~  250 (276)
                      ++++.    |+.|++||+++... +...... .....+....|++++++|++++ .|+.|++||+.+++.......  .+
T Consensus       227 vt~G~s~s~Dr~VklWDlr~~~~-p~~~~~~-d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~--~s  302 (493)
T PTZ00421        227 ITLGCSKSQQRQIMLWDTRKMAS-PYSTVDL-DQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSY--SS  302 (493)
T ss_pred             EEEecCCCCCCeEEEEeCCCCCC-ceeEecc-CCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeec--cC
Confidence            44442    68999999987553 2222211 2233455678999999998887 599999999999988776543  24


Q ss_pred             CCceEEEEECCC
Q 023822          251 RNSTLEASFSPE  262 (276)
Q Consensus       251 ~~~v~~~~~s~~  262 (276)
                      ..++..++|.|.
T Consensus       303 ~~~~~g~~~~pk  314 (493)
T PTZ00421        303 VEPHKGLCMMPK  314 (493)
T ss_pred             CCCCcceEeccc
Confidence            556777888774

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=2.3e-35  Score=209.40  Aligned_cols=237  Identities=14%  Similarity=0.226  Sum_probs=203.9

Q ss_pred             eeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeee--eeeeeeceEEEEEecc-CCeEEEeccCCCCCceE
Q 023822           28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKT--INSKKYGVDLVCFTSH-PTTVIYSSKNGWDESLR  104 (276)
Q Consensus        28 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~-~~~l~~~~~~~~d~~i~  104 (276)
                      +.+++|.+.|.+++|+.+|..|++|+.|+++.+|+++..+....  ..+|...|-.++|.|. ...+++++.   |..|+
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~---dk~ir   90 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASG---DKTIR   90 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecC---CceEE
Confidence            56789999999999999999999999999999999987755443  4678888999999885 556777776   99999


Q ss_pred             EEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe-ecCCCeeEecCCCcEEEEee-CC
Q 023822          105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR-VQGRPAAAYDDQGLVFAVAF-GG  182 (276)
Q Consensus       105 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~-d~  182 (276)
                      +||++.+++........+.+ -+.|+|+|++++.+..|..|...|.++.+.....+ ...+..++|+.++.++.... .|
T Consensus        91 ~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG  169 (313)
T KOG1407|consen   91 IWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLG  169 (313)
T ss_pred             EEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCc
Confidence            99999999998887555554 47899999999999999999999999988777663 33456788887776666555 69


Q ss_pred             eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCC
Q 023822          183 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  262 (276)
Q Consensus       183 ~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~  262 (276)
                      .|.|......+.    +..+..|+....|+.|+|+|+|+|+|+.|..+.+||+...-+++.+.   .+.-+|..+.||.|
T Consensus       170 ~v~ILsypsLkp----v~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is---RldwpVRTlSFS~d  242 (313)
T KOG1407|consen  170 CVEILSYPSLKP----VQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS---RLDWPVRTLSFSHD  242 (313)
T ss_pred             eEEEEecccccc----ccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeec---cccCceEEEEeccC
Confidence            999999886554    67788899999999999999999999999999999999988888888   68899999999999


Q ss_pred             CcEEEEecCCCCC
Q 023822          263 GMFVISGRVSPFS  275 (276)
Q Consensus       263 g~~l~~~~~dg~v  275 (276)
                      |++||+||+|-++
T Consensus       243 g~~lASaSEDh~I  255 (313)
T KOG1407|consen  243 GRMLASASEDHFI  255 (313)
T ss_pred             cceeeccCccceE
Confidence            9999999999765

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.4e-35  Score=237.93  Aligned_cols=252  Identities=19%  Similarity=0.317  Sum_probs=221.5

Q ss_pred             eeehHHHhhccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEE
Q 023822           14 LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIY   93 (276)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   93 (276)
                      +.+++-.+  ...+..|.+|.++|..++|+|++.++++|+.|..|+||+.++.+++.++.+|-..|..+.|++.-..+++
T Consensus        33 IQlWDYRM--~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlS  110 (1202)
T KOG0292|consen   33 IQLWDYRM--GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILS  110 (1202)
T ss_pred             eeeehhhh--hhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEE
Confidence            44554433  2446778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCce-------------------
Q 023822           94 SSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK-------------------  154 (276)
Q Consensus        94 ~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-------------------  154 (276)
                      ++.   |.+|+||+..+++++..+.+|...|.|..|+|....++++|-|.+|++||+..-+                   
T Consensus       111 ASD---DQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~  187 (1202)
T KOG0292|consen  111 ASD---DQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGN  187 (1202)
T ss_pred             ccC---CCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccc
Confidence            998   9999999999999999999999999999999999999999999999999975211                   


Q ss_pred             ---------eeeeE---eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEE
Q 023822          155 ---------CQGLL---RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLM  221 (276)
Q Consensus       155 ---------~~~~~---~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  221 (276)
                               .++.+   |..+++-++|+|.-.++++|. |+.|++|.+...+  ....-...+|.+.|.++-|+|...++
T Consensus       188 ~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK--aWEvDtcrgH~nnVssvlfhp~q~lI  265 (1202)
T KOG0292|consen  188 SDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK--AWEVDTCRGHYNNVSSVLFHPHQDLI  265 (1202)
T ss_pred             hhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc--ceeehhhhcccCCcceEEecCcccee
Confidence                     11111   455678899999998888888 7999999987633  33455667899999999999999999


Q ss_pred             EEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          222 LLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       222 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      ++.++|++|++||+...+.+++++   ...+..+.++-+|..+++++|-+.|++
T Consensus       266 lSnsEDksirVwDm~kRt~v~tfr---rendRFW~laahP~lNLfAAgHDsGm~  316 (1202)
T KOG0292|consen  266 LSNSEDKSIRVWDMTKRTSVQTFR---RENDRFWILAAHPELNLFAAGHDSGMI  316 (1202)
T ss_pred             EecCCCccEEEEecccccceeeee---ccCCeEEEEEecCCcceeeeecCCceE
Confidence            999999999999999999999998   456789999999999999999988864

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=5.2e-34  Score=248.74  Aligned_cols=235  Identities=15%  Similarity=0.271  Sum_probs=196.5

Q ss_pred             eccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCC----e----eeeeeeeeeeceEEEEEecc-CCeEEEeccCCCC
Q 023822           30 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA----T----CLKTINSKKYGVDLVCFTSH-PTTVIYSSKNGWD  100 (276)
Q Consensus        30 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----~----~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~d  100 (276)
                      +..|.+.|.+++|+|++++||+|+.|+.|+||+....    .    +...+. +...+.+++|++. +..+++++.   |
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~---D  554 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNF---E  554 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeC---C
Confidence            4458999999999999999999999999999997532    1    122222 3457899999874 678888887   9


Q ss_pred             CceEEEEccCCceeeeecccCcceEEEEecc-CCCEEEEeeCCCeEEEEeccCceeeeeEee-cCCCeeEec-CCCcEEE
Q 023822          101 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRV-QGRPAAAYD-DQGLVFA  177 (276)
Q Consensus       101 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~-~~~~~l~  177 (276)
                      +.|++||+.+++.+..+.+|.+.|++++|+| ++.+|++|+.|+.|++||++++.....+.. ..+.++.|+ +++.+++
T Consensus       555 g~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~la  634 (793)
T PLN00181        555 GVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLA  634 (793)
T ss_pred             CeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEE
Confidence            9999999999999999999999999999997 788999999999999999999888777733 356678884 5688887


Q ss_pred             Eee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCC------cEEEEeecCCCC
Q 023822          178 VAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG------TLLSTYNVKPVS  250 (276)
Q Consensus       178 ~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~  250 (276)
                      +++ |+.|++||++....   ....+.+|...|.++.|. ++.+|++++.|+.|++||+..+      +.+..+.   +|
T Consensus       635 tgs~dg~I~iwD~~~~~~---~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~---gh  707 (793)
T PLN00181        635 FGSADHKVYYYDLRNPKL---PLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM---GH  707 (793)
T ss_pred             EEeCCCeEEEEECCCCCc---cceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEc---CC
Confidence            777 99999999987542   134456788899999997 6788999999999999998743      5667777   78


Q ss_pred             CCceEEEEECCCCcEEEEecCCCCC
Q 023822          251 RNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       251 ~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      ...+..++|+|++++|++|+.||.|
T Consensus       708 ~~~i~~v~~s~~~~~lasgs~D~~v  732 (793)
T PLN00181        708 TNVKNFVGLSVSDGYIATGSETNEV  732 (793)
T ss_pred             CCCeeEEEEcCCCCEEEEEeCCCEE
Confidence            8999999999999999999999975

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.4e-35  Score=230.19  Aligned_cols=242  Identities=19%  Similarity=0.243  Sum_probs=218.7

Q ss_pred             cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i  103 (276)
                      ...++.+.-..-||.+..|-+..+++++|+.|..|+||+..+++.+..+..|...|.+++.+|...++++++.   |-.|
T Consensus        45 qtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSD---Dm~i  121 (794)
T KOG0276|consen   45 QTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSD---DMTI  121 (794)
T ss_pred             ceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCC---ccEE
Confidence            4456667777789999999999999999999999999999999999999999999999999999999999998   9999


Q ss_pred             EEEEccCC-ceeeeecccCcceEEEEeccC-CCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCC--cEEE
Q 023822          104 RLLSLHDN-KYLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQG--LVFA  177 (276)
Q Consensus       104 ~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~--~~l~  177 (276)
                      ++||.+.+ .+.+++.+|...|.+++|+|. .+.|++++.|++|++|.+.+..+..++  |..+++++.+-+.|  .+|+
T Consensus       122 KlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylI  201 (794)
T KOG0276|consen  122 KLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLI  201 (794)
T ss_pred             EEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEE
Confidence            99998765 678899999999999999995 569999999999999999999998888  77789999998866  4555


Q ss_pred             Eee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEE
Q 023822          178 VAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE  256 (276)
Q Consensus       178 ~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~  256 (276)
                      ++. |..|++||.++..+    +..+.+|...|+.+.|+|.-..+++|++||+++||+..+.++...+.   -....+++
T Consensus       202 sgaDD~tiKvWDyQtk~C----V~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn---~gleRvW~  274 (794)
T KOG0276|consen  202 SGADDLTIKVWDYQTKSC----VQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLN---YGLERVWC  274 (794)
T ss_pred             ecCCCceEEEeecchHHH----HHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhh---cCCceEEE
Confidence            555 89999999998776    77889999999999999999999999999999999999988888887   46688999


Q ss_pred             EEECCCCcEEEEecCCCCC
Q 023822          257 ASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       257 ~~~s~~g~~l~~~~~dg~v  275 (276)
                      ++-.+.+..++.|.++|.+
T Consensus       275 I~~~k~~~~i~vG~Deg~i  293 (794)
T KOG0276|consen  275 IAAHKGDGKIAVGFDEGSV  293 (794)
T ss_pred             EeecCCCCeEEEeccCCcE
Confidence            9999999999999998875

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=5.6e-35  Score=216.12  Aligned_cols=245  Identities=19%  Similarity=0.286  Sum_probs=220.4

Q ss_pred             ccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCc
Q 023822           23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES  102 (276)
Q Consensus        23 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~  102 (276)
                      +.++..++.||...|..+++|+-..||++++.|+.|+.||++..+.++.+.+|-..|.+++.+|.-..|++++.   |.+
T Consensus       182 tg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~gr---Dst  258 (460)
T KOG0285|consen  182 TGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGR---DST  258 (460)
T ss_pred             cCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCC---cce
Confidence            44566789999999999999999999999999999999999999999999999999999999999999999999   999


Q ss_pred             eEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee
Q 023822          103 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF  180 (276)
Q Consensus       103 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~  180 (276)
                      +++||+++...+..+.+|..+|.++.+.|-...+++|+.|++|++||++.++....+  +...+++++.+|....+++++
T Consensus       259 ~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas  338 (460)
T KOG0285|consen  259 IRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS  338 (460)
T ss_pred             EEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC
Confidence            999999999999999999999999999998889999999999999999999988877  556688999999999999999


Q ss_pred             CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecC--C---CCCCceE
Q 023822          181 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK--P---VSRNSTL  255 (276)
Q Consensus       181 d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~---~~~~~v~  255 (276)
                      ...|+-|++..+..    ...+.+|..-+++++...|| ++++|+++|.|.+||.++|...+.....  +   ..+..|.
T Consensus       339 ~dnik~w~~p~g~f----~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~  413 (460)
T KOG0285|consen  339 PDNIKQWKLPEGEF----LQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIF  413 (460)
T ss_pred             CccceeccCCccch----hhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCcccccccee
Confidence            88999999987654    55578899999999998886 6888999999999999998877665311  1   1356789


Q ss_pred             EEEECCCCcEEEEecCCCCC
Q 023822          256 EASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       256 ~~~~s~~g~~l~~~~~dg~v  275 (276)
                      +.+|...|..|++|..|.++
T Consensus       414 as~fDktg~rlit~eadKtI  433 (460)
T KOG0285|consen  414 ASCFDKTGSRLITGEADKTI  433 (460)
T ss_pred             EEeecccCceEEeccCCcce
Confidence            99999999999999999875

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=7e-34  Score=202.86  Aligned_cols=241  Identities=14%  Similarity=0.199  Sum_probs=196.6

Q ss_pred             hccccceee-ccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccC--CeeeeeeeeeeeceEEEEEeccCCeEEEeccCC
Q 023822           22 QSMEVGMSF-RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA--ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG   98 (276)
Q Consensus        22 ~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~   98 (276)
                      .++.....+ .+|+..|.+++|+|.|++||+++.|.++.||.-..  .+++..+.+|+..|.+++|+++|.+|++++.  
T Consensus        48 ~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSR--  125 (312)
T KOG0645|consen   48 DSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSR--  125 (312)
T ss_pred             CcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeC--
Confidence            345555555 36999999999999999999999999999998663  4788999999999999999999999999999  


Q ss_pred             CCCceEEEEccCC---ceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEecc---CceeeeeE--eecCCCeeEec
Q 023822           99 WDESLRLLSLHDN---KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR---AEKCQGLL--RVQGRPAAAYD  170 (276)
Q Consensus        99 ~d~~i~~~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~---~~~~~~~~--~~~~~~~~~~~  170 (276)
                       |+.|.+|.+..+   ++...+++|...|..+.|+|...+|+++++|++|++|+-.   .-.+...+  +...+-+++|+
T Consensus       126 -DKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~  204 (312)
T KOG0645|consen  126 -DKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFD  204 (312)
T ss_pred             -CCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEec
Confidence             999999998754   4567889999999999999999999999999999999876   23566777  44467799999


Q ss_pred             CCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCc--EE--EEee
Q 023822          171 DQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT--LL--STYN  245 (276)
Q Consensus       171 ~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~--~~~~  245 (276)
                      +.|..|++++ |+++++|.....-        ...|..++..++|. + ..|++++.|+.|++|.-...-  +.  ...+
T Consensus       205 ~~G~rl~s~sdD~tv~Iw~~~~~~--------~~~~sr~~Y~v~W~-~-~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~  274 (312)
T KOG0645|consen  205 NIGSRLVSCSDDGTVSIWRLYTDL--------SGMHSRALYDVPWD-N-GVIASGGGDDAIRLFKESDSPDEPSWNLLAK  274 (312)
T ss_pred             CCCceEEEecCCcceEeeeeccCc--------chhcccceEeeeec-c-cceEeccCCCEEEEEEecCCCCCchHHHHHh
Confidence            9997777776 8999999865311        12355688889998 4 469999999999999865321  11  1111


Q ss_pred             cCCCCCCceEEEEECCC-CcEEEEecCCCCC
Q 023822          246 VKPVSRNSTLEASFSPE-GMFVISGRVSPFS  275 (276)
Q Consensus       246 ~~~~~~~~v~~~~~s~~-g~~l~~~~~dg~v  275 (276)
                      ....|...|++++|+|. ..+|++|+.||+|
T Consensus       275 ~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v  305 (312)
T KOG0645|consen  275 KEGAHEVDVNSVQWNPKVSNRLASGGDDGIV  305 (312)
T ss_pred             hhcccccccceEEEcCCCCCceeecCCCceE
Confidence            22258889999999995 6799999999986

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=6.6e-34  Score=211.66  Aligned_cols=243  Identities=21%  Similarity=0.239  Sum_probs=207.6

Q ss_pred             cccceeeccCCCcEEEEEEcCCC---CEEEEeecCCeEEEEEccCCeee----eeeeeeeeceEEEEEeccCCeEEEecc
Q 023822           24 MEVGMSFRDYNGRISSMDFHKSS---SYLVTASDDESIRLYDVTAATCL----KTINSKKYGVDLVCFTSHPTTVIYSSK   96 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~   96 (276)
                      .+..+++.||.++|.+++|....   ..|++++.|.++++|.++.++..    ....+|...|.++...+++..+++++.
T Consensus       134 Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~  213 (423)
T KOG0313|consen  134 GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSW  213 (423)
T ss_pred             CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecc
Confidence            45567889999999998885433   35999999999999999876532    334589999999999999999999997


Q ss_pred             CCCCCceEEEEccC-------------------------CceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEecc
Q 023822           97 NGWDESLRLLSLHD-------------------------NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR  151 (276)
Q Consensus        97 ~~~d~~i~~~d~~~-------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~  151 (276)
                         |..|.+|+..+                         +.++..+.+|..+|.++.|++ ...+++++.|.+|+.||+.
T Consensus       214 ---D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDle  289 (423)
T KOG0313|consen  214 ---DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLE  289 (423)
T ss_pred             ---cceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEee
Confidence               99999999321                         234567889999999999987 6689999999999999999


Q ss_pred             CceeeeeE-eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCC-cEEEEeecCC
Q 023822          152 AEKCQGLL-RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEG  228 (276)
Q Consensus       152 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg  228 (276)
                      ++.....+ ......++.++|..+++++++ |..|++||.+++. .......+.+|.+.|.++.|+|.. ..|++++.|+
T Consensus       290 tg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~-gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~  368 (423)
T KOG0313|consen  290 TGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGD-GSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDN  368 (423)
T ss_pred             cccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCC-CceeEEeeecchhhhhheecCCCCceEEEEEecCC
Confidence            99988887 445577999999999988888 9999999999985 456677888999999999999965 5678899999


Q ss_pred             cEEEEECCCCc-EEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          229 HIHVLDSFRGT-LLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       229 ~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      ++++||+++.+ ++..+.   +|...|.++.|+. +.++++||.|..+
T Consensus       369 t~klWDvRS~k~plydI~---~h~DKvl~vdW~~-~~~IvSGGaD~~l  412 (423)
T KOG0313|consen  369 TVKLWDVRSTKAPLYDIA---GHNDKVLSVDWNE-GGLIVSGGADNKL  412 (423)
T ss_pred             eEEEEEeccCCCcceeec---cCCceEEEEeccC-CceEEeccCcceE
Confidence            99999999888 888888   7999999999964 5689999999764

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=6.8e-35  Score=233.24  Aligned_cols=237  Identities=17%  Similarity=0.264  Sum_probs=210.6

Q ss_pred             eeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCC----eeeeeeeeeeeceEEEEEeccC-CeEEEeccCCCCCce
Q 023822           29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA----TCLKTINSKKYGVDLVCFTSHP-TTVIYSSKNGWDESL  103 (276)
Q Consensus        29 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~d~~i  103 (276)
                      .+.||+..|.+++...+|.+|++|+.|.++++|.++++    .+++...+|.+.|.+++++..+ .+|++++.   |+++
T Consensus       360 ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~---D~tl  436 (775)
T KOG0319|consen  360 IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQ---DCTL  436 (775)
T ss_pred             EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecC---CceE
Confidence            67899999999996667889999999999999987543    3456678999999999998765 46677776   9999


Q ss_pred             EEEEccCCcee---------eeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCC
Q 023822          104 RLLSLHDNKYL---------RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQ  172 (276)
Q Consensus       104 ~~~d~~~~~~~---------~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~  172 (276)
                      ++|++...+..         .+...|...|++++.+|+.+++++|++|.+.++|+++..+....+  |..++.++.|+|.
T Consensus       437 K~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~  516 (775)
T KOG0319|consen  437 KLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKN  516 (775)
T ss_pred             EEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccc
Confidence            99999763211         123579999999999999999999999999999999988888888  6677889999999


Q ss_pred             CcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCC
Q 023822          173 GLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR  251 (276)
Q Consensus       173 ~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  251 (276)
                      .+++++++ |++|++|.+.++.+    +..+.+|...|..+.|-.+|+.|++++.||-|++|+++++.++.++.   .|.
T Consensus       517 dq~laT~SgD~TvKIW~is~fSC----lkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD---~H~  589 (775)
T KOG0319|consen  517 DQLLATCSGDKTVKIWSISTFSC----LKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD---AHN  589 (775)
T ss_pred             cceeEeccCCceEEEEEecccee----eeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh---hcc
Confidence            99998888 99999999999887    78889999999999999999999999999999999999999999999   899


Q ss_pred             CceEEEEECCCCcEEEEecCCCCC
Q 023822          252 NSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       252 ~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      ..|++++-+|.+.++++|+.||-+
T Consensus       590 DrvWaL~~~~~~~~~~tgg~Dg~i  613 (775)
T KOG0319|consen  590 DRVWALSVSPLLDMFVTGGGDGRI  613 (775)
T ss_pred             ceeEEEeecCccceeEecCCCeEE
Confidence            999999999999999999999853

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=6.1e-33  Score=214.50  Aligned_cols=249  Identities=16%  Similarity=0.222  Sum_probs=208.2

Q ss_pred             hccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCe--eeeeeeeeeeceEEEEEeccCCeEEEeccCCC
Q 023822           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW   99 (276)
Q Consensus        22 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~   99 (276)
                      .+......+.+|..+++-..|+|.|.++|+|...|+|||||....+  +..+++...++|..++|+++++++++.+++ .
T Consensus        47 ~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEG-r  125 (603)
T KOG0318|consen   47 DNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEG-R  125 (603)
T ss_pred             CCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecC-c
Confidence            4455567788999999999999999999999999999999986533  334567778899999999999999998863 2


Q ss_pred             CCceEEEEccCCceeeeecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEE
Q 023822          100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVF  176 (276)
Q Consensus       100 d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l  176 (276)
                      ++..+++-.+++..+-.+.+|...|++++|-|... .+++|+.|++|.+|+=...+....+  |..-+.++.|+|||.++
T Consensus       126 erfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~F  205 (603)
T KOG0318|consen  126 ERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRF  205 (603)
T ss_pred             cceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeE
Confidence            44455555557777889999999999999999776 7999999999999986665555555  55568899999999877


Q ss_pred             EEee-CCeEEEEecccCCCCCeeeeee---cCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecC-----
Q 023822          177 AVAF-GGYIRMFDARKYEKGPFDIFSV---GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK-----  247 (276)
Q Consensus       177 ~~~~-d~~i~~~d~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----  247 (276)
                      ++.. ||++.+||=.+++.    +..+   .+|.+.|.+++|+||++.+++++.|.+++|||+.+.++++++...     
T Consensus       206 at~gsDgki~iyDGktge~----vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~d  281 (603)
T KOG0318|consen  206 ATAGSDGKIYIYDGKTGEK----VGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVED  281 (603)
T ss_pred             EEecCCccEEEEcCCCccE----EEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhc
Confidence            7666 99999999998775    4444   489999999999999999999999999999999887776654321     


Q ss_pred             -----------------------------------CCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          248 -----------------------------------PVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       248 -----------------------------------~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                                                         .+|...|+++..+||+++|++|+.||.+
T Consensus       282 qqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I  344 (603)
T KOG0318|consen  282 QQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHI  344 (603)
T ss_pred             eEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceE
Confidence                                               1688899999999999999999999975

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.2e-33  Score=205.73  Aligned_cols=261  Identities=18%  Similarity=0.265  Sum_probs=220.0

Q ss_pred             CCcccCcccceeeeeehH-----HHhhccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeee
Q 023822            1 MVGSQSEREDKVSLELSE-----EILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSK   75 (276)
Q Consensus         1 ivg~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~   75 (276)
                      |||+|+.-.....+...+     .....+.+...+..|.++|++++.+  +.++|+|+.|-+|+|||+.+...+..+..|
T Consensus         5 IvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~H   82 (362)
T KOG0294|consen    5 IVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSH   82 (362)
T ss_pred             EEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceecc
Confidence            577777766555444433     2234456678889999999999996  789999999999999999999999999999


Q ss_pred             eeceEEEEEeccCC--eEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCc
Q 023822           76 KYGVDLVCFTSHPT--TVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE  153 (276)
Q Consensus        76 ~~~v~~~~~~~~~~--~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  153 (276)
                      .+.|+++.|.+...  +|++++.   ||.|.+|+....+.+..+++|.+.|+.++.+|.+++.++.+.|+.+++||+-.+
T Consensus        83 agsitaL~F~~~~S~shLlS~sd---DG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~G  159 (362)
T KOG0294|consen   83 AGSITALKFYPPLSKSHLLSGSD---DGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRG  159 (362)
T ss_pred             ccceEEEEecCCcchhheeeecC---CCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcC
Confidence            99999999998876  8999998   999999999999999999999999999999999999999999999999999988


Q ss_pred             eeeeeEeec-CCCeeEecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEE
Q 023822          154 KCQGLLRVQ-GRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHV  232 (276)
Q Consensus       154 ~~~~~~~~~-~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  232 (276)
                      +.-...... ....+.|+|.|..++.+....|-+|.+.+..     ++..-..+..+.++.|.. +.+|++|..|+.|.+
T Consensus       160 r~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~-----v~~~i~~~~r~l~~~~l~-~~~L~vG~d~~~i~~  233 (362)
T KOG0294|consen  160 RVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNAS-----VFREIENPKRILCATFLD-GSELLVGGDNEWISL  233 (362)
T ss_pred             ccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHh-----HhhhhhccccceeeeecC-CceEEEecCCceEEE
Confidence            877666433 3446999999999999998899999988744     222222234567777764 567999999999999


Q ss_pred             EECCCCcEEEEeecCCCCCCceEEEEE--CCCCcEEEEecCCCCC
Q 023822          233 LDSFRGTLLSTYNVKPVSRNSTLEASF--SPEGMFVISGRVSPFS  275 (276)
Q Consensus       233 ~d~~~~~~~~~~~~~~~~~~~v~~~~~--s~~g~~l~~~~~dg~v  275 (276)
                      ||..+..+...+.   +|...|-++.+  .|++.+|+++|.||.+
T Consensus       234 ~D~ds~~~~~~~~---AH~~RVK~i~~~~~~~~~~lvTaSSDG~I  275 (362)
T KOG0294|consen  234 KDTDSDTPLTEFL---AHENRVKDIASYTNPEHEYLVTASSDGFI  275 (362)
T ss_pred             eccCCCccceeee---cchhheeeeEEEecCCceEEEEeccCceE
Confidence            9999999999888   89999999984  5788999999999985

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.1e-32  Score=240.45  Aligned_cols=239  Identities=13%  Similarity=0.176  Sum_probs=195.9

Q ss_pred             CCCcEEEEEEcC-CCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEec-cCCeEEEeccCCCCCceEEEEccC
Q 023822           33 YNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTS-HPTTVIYSSKNGWDESLRLLSLHD  110 (276)
Q Consensus        33 h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~d~~i~~~d~~~  110 (276)
                      +...|.+++|++ ++.+|++++.||+|++||+.+++.+..+..|...|.+++|+| ++..|++++.   |+.|++||+++
T Consensus       531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~---Dg~v~iWd~~~  607 (793)
T PLN00181        531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSD---DGSVKLWSINQ  607 (793)
T ss_pred             ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcC---CCEEEEEECCC
Confidence            346899999987 578999999999999999999999999999999999999997 6789999998   99999999999


Q ss_pred             CceeeeecccCcceEEEEec-cCCCEEEEeeCCCeEEEEeccCce-eeeeE--eecCCCeeEecCCCcEEEEeeCCeEEE
Q 023822          111 NKYLRYFKGHHDRVVSLSLC-SSKDCFISGSLDRTVLLWDQRAEK-CQGLL--RVQGRPAAAYDDQGLVFAVAFGGYIRM  186 (276)
Q Consensus       111 ~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~--~~~~~~~~~~~~~~~~l~~~~d~~i~~  186 (276)
                      +..+..+..+ ..+.++.|+ +++.+|++|+.|+.|++||++..+ ....+  +...+..+.|.+...+++++.|+.|++
T Consensus       608 ~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~iki  686 (793)
T PLN00181        608 GVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKL  686 (793)
T ss_pred             CcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEE
Confidence            9888888744 678999995 578899999999999999998765 34444  455677889975555555556999999


Q ss_pred             EecccCCC--CCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecC----------CCCCCce
Q 023822          187 FDARKYEK--GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK----------PVSRNST  254 (276)
Q Consensus       187 ~d~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------~~~~~~v  254 (276)
                      ||++....  ....+..+.+|...+..++|+|++++|++|+.|+.|++|+......+..+...          ..+...|
T Consensus       687 Wd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V  766 (793)
T PLN00181        687 WDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFI  766 (793)
T ss_pred             EeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEE
Confidence            99975321  11225567788889999999999999999999999999998766544333210          1245679


Q ss_pred             EEEEECCCCcEEEEecCCCCC
Q 023822          255 LEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       255 ~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      .+++|+|++..|++|+.||.+
T Consensus       767 ~~v~ws~~~~~lva~~~dG~I  787 (793)
T PLN00181        767 SSVCWRGQSSTLVAANSTGNI  787 (793)
T ss_pred             EEEEEcCCCCeEEEecCCCcE
Confidence            999999999999999999986

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=8.9e-35  Score=214.59  Aligned_cols=235  Identities=18%  Similarity=0.236  Sum_probs=194.8

Q ss_pred             ccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCc
Q 023822           23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES  102 (276)
Q Consensus        23 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~  102 (276)
                      .+...+.+.||++.|.|+.|.  .+.+++|+.|.+|++||+++++++.++-.|...|..+.|  ++.++++++.   |.+
T Consensus       226 ~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf--~ng~mvtcSk---Drs  298 (499)
T KOG0281|consen  226 SLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRF--SNGYMVTCSK---DRS  298 (499)
T ss_pred             cHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEE--eCCEEEEecC---Cce
Confidence            456677889999999999996  469999999999999999999999999999999999999  4678999998   999


Q ss_pred             eEEEEccCCc---eeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEe
Q 023822          103 LRLLSLHDNK---YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVA  179 (276)
Q Consensus       103 i~~~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  179 (276)
                      +.+||+....   ..+.+.+|...|+.+.|  +.+++++++.|.+|++|++.+.+.+.+++.+..-..+.--.++++++|
T Consensus       299 iaVWdm~sps~it~rrVLvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSG  376 (499)
T KOG0281|consen  299 IAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSG  376 (499)
T ss_pred             eEEEeccCchHHHHHHHHhhhhhheeeecc--ccceEEEecCCceEEEEeccceeeehhhhcccccceehhccCeEEEec
Confidence            9999997764   34567899999999999  456999999999999999999999999965554434444467888888


Q ss_pred             e-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEee------cCCCCCC
Q 023822          180 F-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN------VKPVSRN  252 (276)
Q Consensus       180 ~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~~~~~~  252 (276)
                      + |.+|++||+..+..    ...+++|+.-|.++.|.  .+.+++|+.||.|++||+..+.......      ....|.+
T Consensus       377 SSDntIRlwdi~~G~c----LRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsg  450 (499)
T KOG0281|consen  377 SSDNTIRLWDIECGAC----LRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSG  450 (499)
T ss_pred             CCCceEEEEeccccHH----HHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccc
Confidence            7 99999999999886    77788999999999995  5679999999999999998765432111      0114788


Q ss_pred             ceEEEEECCCCcEEEEecCCCC
Q 023822          253 STLEASFSPEGMFVISGRVSPF  274 (276)
Q Consensus       253 ~v~~~~~s~~g~~l~~~~~dg~  274 (276)
                      .|..+.|.  ...+++++.|.+
T Consensus       451 RVFrLQFD--~fqIvsssHddt  470 (499)
T KOG0281|consen  451 RVFRLQFD--EFQIISSSHDDT  470 (499)
T ss_pred             eeEEEeec--ceEEEeccCCCe
Confidence            99999984  456777776655

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.3e-34  Score=233.11  Aligned_cols=241  Identities=17%  Similarity=0.242  Sum_probs=216.1

Q ss_pred             eeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEc
Q 023822           29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL  108 (276)
Q Consensus        29 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~  108 (276)
                      .|...+.+|..++|+|...+++++-..|.|++||..-+.++..+..|.++|..+.|+|....+++|+.   |..|++|+.
T Consensus         4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGD---DykIkVWnY   80 (1202)
T KOG0292|consen    4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGD---DYKIKVWNY   80 (1202)
T ss_pred             hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCC---ccEEEEEec
Confidence            45556788999999999999999999999999999999999999999999999999999999999998   999999999


Q ss_pred             cCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-CCeEE
Q 023822          109 HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-GGYIR  185 (276)
Q Consensus       109 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d~~i~  185 (276)
                      .+.+++.++.+|-+.|..+.|++.-.+++++|.|.+|+||+..+.+++..+  |.+-+.|..|+|...++++++ |.+|+
T Consensus        81 k~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVR  160 (1202)
T KOG0292|consen   81 KTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVR  160 (1202)
T ss_pred             ccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEE
Confidence            999999999999999999999999999999999999999999999999998  666688999999888888888 99999


Q ss_pred             EEecccCCCC-------------------------CeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcE
Q 023822          186 MFDARKYEKG-------------------------PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL  240 (276)
Q Consensus       186 ~~d~~~~~~~-------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  240 (276)
                      +||+...++.                         ....+.+++|...|+-++|+|.-.++++|+.|..|++|.+...+.
T Consensus       161 VWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa  240 (1202)
T KOG0292|consen  161 VWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA  240 (1202)
T ss_pred             EEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc
Confidence            9998653311                         122345678999999999999999999999999999999865443


Q ss_pred             --EEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          241 --LSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       241 --~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                        +.+..   +|.+.|.++-|+|...++++.|+|+++
T Consensus       241 WEvDtcr---gH~nnVssvlfhp~q~lIlSnsEDksi  274 (1202)
T KOG0292|consen  241 WEVDTCR---GHYNNVSSVLFHPHQDLILSNSEDKSI  274 (1202)
T ss_pred             eeehhhh---cccCCcceEEecCccceeEecCCCccE
Confidence              33344   899999999999999999999999975

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=1.6e-33  Score=234.11  Aligned_cols=242  Identities=17%  Similarity=0.239  Sum_probs=207.5

Q ss_pred             ccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccC------------------CeeeeeeeeeeeceEEEEEec
Q 023822           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA------------------ATCLKTINSKKYGVDLVCFTS   86 (276)
Q Consensus        25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~------------------~~~~~~~~~~~~~v~~~~~~~   86 (276)
                      +.+.++..|.+.|+|+.|+|||++||+|++|+.|.||....                  .++...+.+|.+.|..++|+|
T Consensus        60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp  139 (942)
T KOG0973|consen   60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP  139 (942)
T ss_pred             hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC
Confidence            45667788999999999999999999999999999999762                  246778889999999999999


Q ss_pred             cCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEee-----
Q 023822           87 HPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV-----  161 (276)
Q Consensus        87 ~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----  161 (276)
                      ++.++++++.   |++|.+|+..+.+.+..+++|.+.|..+.|.|-|++||+-+.|++|++|++......+.+..     
T Consensus       140 ~~~~lvS~s~---DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~  216 (942)
T KOG0973|consen  140 DDSLLVSVSL---DNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEES  216 (942)
T ss_pred             CccEEEEecc---cceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhC
Confidence            9999999998   99999999999999999999999999999999999999999999999999887666665511     


Q ss_pred             ---cCCCeeEecCCCcEEEEee-----CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCC-----Cc---------
Q 023822          162 ---QGRPAAAYDDQGLVFAVAF-----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-----GR---------  219 (276)
Q Consensus       162 ---~~~~~~~~~~~~~~l~~~~-----d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~---------  219 (276)
                         .....+.|+|||++|++..     -..+.+.+-.+.+.    ...+-+|..++.++.|+|.     .+         
T Consensus       217 ~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~----~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~  292 (942)
T KOG0973|consen  217 PLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKV----DKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNC  292 (942)
T ss_pred             CCcceeeecccCCCcCeecchhhccCCcceeEEEecCCcee----eeeeecCCCceEEEEeChHHhccccccCCccCCCc
Confidence               1234789999999999887     25778887765443    5567789999999999981     11         


Q ss_pred             ---EEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          220 ---LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       220 ---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                         .+|+|+.|++|.||.....+++.....  -....|.+++|+|||..|+++|.||+|
T Consensus       293 ~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~--lf~~SI~DmsWspdG~~LfacS~DGtV  349 (942)
T KOG0973|consen  293 YYCIAAVGSQDRSLSVWNTALPRPLFVIHN--LFNKSIVDMSWSPDGFSLFACSLDGTV  349 (942)
T ss_pred             ceEEEEEecCCccEEEEecCCCCchhhhhh--hhcCceeeeeEcCCCCeEEEEecCCeE
Confidence               578899999999999877777765543  356889999999999999999999986

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=4.1e-35  Score=216.37  Aligned_cols=221  Identities=16%  Similarity=0.301  Sum_probs=193.1

Q ss_pred             CCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCc
Q 023822           33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK  112 (276)
Q Consensus        33 h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~  112 (276)
                      ....|+|+.+.  ...+++|..|++|+|||..+..++..+.+|.+.|.|+.|  +.+.+++|+.   |.+|++||.++++
T Consensus       196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSS---DsTvrvWDv~tge  268 (499)
T KOG0281|consen  196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSS---DSTVRVWDVNTGE  268 (499)
T ss_pred             cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCC---CceEEEEeccCCc
Confidence            45789999985  568999999999999999999999999999999999999  6678888888   9999999999999


Q ss_pred             eeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeee---eE--eecCCCeeEecCCCcEEEEee-CCeEEE
Q 023822          113 YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG---LL--RVQGRPAAAYDDQGLVFAVAF-GGYIRM  186 (276)
Q Consensus       113 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---~~--~~~~~~~~~~~~~~~~l~~~~-d~~i~~  186 (276)
                      ++.++-+|...|..+.|+  ..++++++.|.++.+||+.....+.   .+  |...++.+.|+..  ++++++ |.+|++
T Consensus       269 ~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k--yIVsASgDRTikv  344 (499)
T KOG0281|consen  269 PLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK--YIVSASGDRTIKV  344 (499)
T ss_pred             hhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc--eEEEecCCceEEE
Confidence            999999999999999995  4689999999999999998775332   22  5555667777654  666555 999999


Q ss_pred             EecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEE
Q 023822          187 FDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFV  266 (276)
Q Consensus       187 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  266 (276)
                      |++.+.+.    +..+.+|...|.|+.+  .|+++++|+.|.+|++||+..|.++..++   +|+.-|.++.|  |.+.+
T Consensus       345 W~~st~ef----vRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLe---GHEeLvRciRF--d~krI  413 (499)
T KOG0281|consen  345 WSTSTCEF----VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE---GHEELVRCIRF--DNKRI  413 (499)
T ss_pred             Eeccceee----ehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHh---chHHhhhheee--cCcee
Confidence            99999776    7778899999988887  58999999999999999999999999999   89999999999  55699


Q ss_pred             EEecCCCCC
Q 023822          267 ISGRVSPFS  275 (276)
Q Consensus       267 ~~~~~dg~v  275 (276)
                      ++|+.||.+
T Consensus       414 VSGaYDGki  422 (499)
T KOG0281|consen  414 VSGAYDGKI  422 (499)
T ss_pred             eeccccceE
Confidence            999999976

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=7.1e-32  Score=221.14  Aligned_cols=232  Identities=12%  Similarity=0.181  Sum_probs=179.4

Q ss_pred             ccceeeccCCCcEEEEEEcCC-CCEEEEeecCCeEEEEEccCCe--------eeeeeeeeeeceEEEEEeccCCeE-EEe
Q 023822           25 EVGMSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTAAT--------CLKTINSKKYGVDLVCFTSHPTTV-IYS   94 (276)
Q Consensus        25 ~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l-~~~   94 (276)
                      .....+.+|.++|.+++|+|+ +++||+|+.|++|+|||+.++.        ++..+.+|...|.+++|+|++..+ +++
T Consensus        65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg  144 (568)
T PTZ00420         65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS  144 (568)
T ss_pred             ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence            456778999999999999996 7899999999999999997542        344677899999999999998865 567


Q ss_pred             ccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecC--CCe-----e
Q 023822           95 SKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPA-----A  167 (276)
Q Consensus        95 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~-----~  167 (276)
                      +.   |+.|++||+++++....+. |...|.+++|+|+|++|++++.|+.|++||+++++.+..+..+.  +..     .
T Consensus       145 S~---DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~  220 (568)
T PTZ00420        145 GF---DSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWID  220 (568)
T ss_pred             eC---CCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEee
Confidence            76   9999999999998777775 66789999999999999999999999999999998887774332  222     2


Q ss_pred             EecCCCcEEEE-eeC----CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEE
Q 023822          168 AYDDQGLVFAV-AFG----GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS  242 (276)
Q Consensus       168 ~~~~~~~~l~~-~~d----~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  242 (276)
                      .|++++.++++ +.+    ++|++||++.... ++....+..+...+......++|.++++|+.|+.|++|++..+. +.
T Consensus       221 ~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~-pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~  298 (568)
T PTZ00420        221 GLGGDDNYILSTGFSKNNMREMKLWDLKNTTS-ALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IR  298 (568)
T ss_pred             eEcCCCCEEEEEEcCCCCccEEEEEECCCCCC-ceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EE
Confidence            34577665555 545    4799999996443 33344444444444445556678999999999999999998764 33


Q ss_pred             EeecCCCCCCceEEEEECCCC
Q 023822          243 TYNVKPVSRNSTLEASFSPEG  263 (276)
Q Consensus       243 ~~~~~~~~~~~v~~~~~s~~g  263 (276)
                      .+... .+..+..+++|.|+-
T Consensus       299 ~l~~~-~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        299 KVNEY-KSCSPFRSFGFLPKQ  318 (568)
T ss_pred             eeccc-ccCCCccceEEcccc
Confidence            33322 256788899999964

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.4e-33  Score=219.65  Aligned_cols=229  Identities=17%  Similarity=0.221  Sum_probs=201.4

Q ss_pred             CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeee-eeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCc
Q 023822           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK  112 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~  112 (276)
                      ...|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.. |...|.+++|+  ...+.+|+.   ++.|..+|++..+
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr---~~~I~~~dvR~~~  291 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSR---DGKILNHDVRISQ  291 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecC---CCcEEEEEEecch
Confidence            78999999999999999999999999999999999999988 99999999996  667778887   9999999999887


Q ss_pred             eeee-ecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCC-CcEEEEee---CCeEE
Q 023822          113 YLRY-FKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQ-GLVFAVAF---GGYIR  185 (276)
Q Consensus       113 ~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~-~~~l~~~~---d~~i~  185 (276)
                      .... +.+|...|..++|+++++++|+|+.|+.+.|||....++...+  |...+..++|+|- ..+||+|.   |+.|+
T Consensus       292 ~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~  371 (484)
T KOG0305|consen  292 HVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIK  371 (484)
T ss_pred             hhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEE
Confidence            6554 8899999999999999999999999999999999887777777  6677889999994 45666665   89999


Q ss_pred             EEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEe--ecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCC
Q 023822          186 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLT--TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG  263 (276)
Q Consensus       186 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  263 (276)
                      +||..++..    +.. ......|.++.|++..+.|+++  ..++.|.||+..+.+.+..+.   +|...|..++++|||
T Consensus       372 fwn~~~g~~----i~~-vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~---gH~~RVl~la~SPdg  443 (484)
T KOG0305|consen  372 FWNTNTGAR----IDS-VDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELL---GHTSRVLYLALSPDG  443 (484)
T ss_pred             EEEcCCCcE----ecc-cccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeec---CCcceeEEEEECCCC
Confidence            999997663    222 3345689999999998777764  457789999999999999998   899999999999999


Q ss_pred             cEEEEecCCCCC
Q 023822          264 MFVISGRVSPFS  275 (276)
Q Consensus       264 ~~l~~~~~dg~v  275 (276)
                      ..+++|+.|.++
T Consensus       444 ~~i~t~a~DETl  455 (484)
T KOG0305|consen  444 ETIVTGAADETL  455 (484)
T ss_pred             CEEEEecccCcE
Confidence            999999999875

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.9e-33  Score=193.98  Aligned_cols=237  Identities=15%  Similarity=0.182  Sum_probs=206.0

Q ss_pred             cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i  103 (276)
                      -..++++.+|...|..++.+.|+..|++|+.|..+.+||+++|+..+.+.+|.+.|+.+.|+.+...+++++.   |..+
T Consensus        49 g~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~Sgsf---D~s~  125 (307)
T KOG0316|consen   49 GALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSF---DSSV  125 (307)
T ss_pred             cceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccc---ccee
Confidence            4557889999999999999999999999999999999999999999999999999999999999999999988   9999


Q ss_pred             EEEEccCC--ceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEee-
Q 023822          104 RLLSLHDN--KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF-  180 (276)
Q Consensus       104 ~~~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-  180 (276)
                      ++||-++.  ++++.+....+.|.++..+  +..+++|+.||+++.||++.++.....-.++++++.|+++++...++. 
T Consensus       126 r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l  203 (307)
T KOG0316|consen  126 RLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSL  203 (307)
T ss_pred             EEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeec
Confidence            99998764  6788888888999999884  567999999999999999999998888899999999999998777776 


Q ss_pred             CCeEEEEecccCCCCCeeeeeecCCCCC--ceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCc-eEEE
Q 023822          181 GGYIRMFDARKYEKGPFDIFSVGGDISD--ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS-TLEA  257 (276)
Q Consensus       181 d~~i~~~d~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-v~~~  257 (276)
                      |+++++.|-.+++.    +....+|...  -..++++.....+++|++||.|++||+.+.+.+..+.   .+... +.++
T Consensus       204 ~stlrLlDk~tGkl----L~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~---~~~~v~v~dl  276 (307)
T KOG0316|consen  204 DSTLRLLDKETGKL----LKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLS---VVSTVIVTDL  276 (307)
T ss_pred             cceeeecccchhHH----HHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeec---cCCceeEEee
Confidence            99999999998875    4444455433  2345677777889999999999999999999999888   45555 8999


Q ss_pred             EECCCCcEEEEecCC
Q 023822          258 SFSPEGMFVISGRVS  272 (276)
Q Consensus       258 ~~s~~g~~l~~~~~d  272 (276)
                      +++|.-..|+++...
T Consensus       277 ~~hp~~~~f~~A~~~  291 (307)
T KOG0316|consen  277 SCHPTMDDFITATGH  291 (307)
T ss_pred             ecccCccceeEecCC
Confidence            999987666665543

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-33  Score=200.21  Aligned_cols=243  Identities=19%  Similarity=0.278  Sum_probs=197.5

Q ss_pred             cccceeeccCCCcEEEEEEcC-CCCEEEEeecCCeEEEEEcc-CCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCC
Q 023822           24 MEVGMSFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVT-AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE  101 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~  101 (276)
                      +.....+.- .+.+..++|++ ..+.+++++.||++++||+. ...++..++.|..+|.++.|++..+..+..+  +||+
T Consensus        51 i~e~~s~d~-~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~lts--SWD~  127 (311)
T KOG0277|consen   51 IQECQSYDT-EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTS--SWDG  127 (311)
T ss_pred             eEEEEeeec-ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEee--ccCC
Confidence            333444432 56789999998 45688899999999999965 3467888999999999999999766544444  3699


Q ss_pred             ceEEEEccCCceeeeecccCcceEEEEeccC-CCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCC-cEEE
Q 023822          102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQG-LVFA  177 (276)
Q Consensus       102 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~-~~l~  177 (276)
                      +|++|+...++.+.++.+|...|....|+|. .+.+++++.|+.+++||++.......+  |...+.++.|+.-+ .+++
T Consensus       128 TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~  207 (311)
T KOG0277|consen  128 TIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLA  207 (311)
T ss_pred             ceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEE
Confidence            9999999999999999999999999999994 679999999999999999976444445  44457788888744 5666


Q ss_pred             Eee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCC-cEEEEeecCCcEEEEECCCC-cEEEEeecCCCCCCce
Q 023822          178 VAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRG-TLLSTYNVKPVSRNST  254 (276)
Q Consensus       178 ~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v  254 (276)
                      ++. |+.|+.||+++.+.+   ++.+.+|...|..++|||.. ..||+++.|-+++|||...+ ..+.+..   .|..-+
T Consensus       208 Tg~vd~~vr~wDir~~r~p---l~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~---~HtEFv  281 (311)
T KOG0277|consen  208 TGGVDNLVRGWDIRNLRTP---LFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVD---HHTEFV  281 (311)
T ss_pred             ecCCCceEEEEehhhcccc---ceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhh---ccceEE
Confidence            666 999999999987643   66778999999999999964 67899999999999998744 4455555   588889


Q ss_pred             EEEEECC-CCcEEEEecCCCCC
Q 023822          255 LEASFSP-EGMFVISGRVSPFS  275 (276)
Q Consensus       255 ~~~~~s~-~g~~l~~~~~dg~v  275 (276)
                      ..+.||+ ++.++|+++.|+.+
T Consensus       282 ~g~Dws~~~~~~vAs~gWDe~l  303 (311)
T KOG0277|consen  282 CGLDWSLFDPGQVASTGWDELL  303 (311)
T ss_pred             eccccccccCceeeecccccce
Confidence            9999998 56799999999864

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=1.2e-33  Score=212.38  Aligned_cols=254  Identities=20%  Similarity=0.250  Sum_probs=209.1

Q ss_pred             eehHHHhhccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEe
Q 023822           15 ELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYS   94 (276)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   94 (276)
                      .+++..........+|.|-.++|++++|.+++..+++++.|+.+++|++...+...++.+|...|+++.|......++++
T Consensus       200 k~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsg  279 (459)
T KOG0288|consen  200 KLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSG  279 (459)
T ss_pred             hhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeec
Confidence            34444444466777888888999999999999999999999999999999999999999999999999999877778888


Q ss_pred             ccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEee-cCCCeeEecCCC
Q 023822           95 SKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV-QGRPAAAYDDQG  173 (276)
Q Consensus        95 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~  173 (276)
                      +.   |.+|++||+....+..++. ....+..+...  ...++++-.|++|++||+++..+...... +.+.++..++++
T Consensus       280 s~---DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g  353 (459)
T KOG0288|consen  280 SA---DRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDG  353 (459)
T ss_pred             cc---cchhhhhhhhhhheecccc-ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCC
Confidence            87   9999999999988877765 34455666665  45688999999999999999999888844 457899999999


Q ss_pred             cEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCC
Q 023822          174 LVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN  252 (276)
Q Consensus       174 ~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  252 (276)
                      .-+.+++ |.++.+.|+++.+........-.......+.+.|||++.|+++||.||.|+||++.++++...+.... ...
T Consensus       354 ~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~-s~~  432 (459)
T KOG0288|consen  354 LELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLST-SNA  432 (459)
T ss_pred             eEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCC-CCc
Confidence            7666666 99999999998654211111111122358889999999999999999999999999999998887432 223


Q ss_pred             ceEEEEECCCCcEEEEecCCCCC
Q 023822          253 STLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       253 ~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      .|++++|+|.|..|++++.+++|
T Consensus       433 aI~s~~W~~sG~~Llsadk~~~v  455 (459)
T KOG0288|consen  433 AITSLSWNPSGSGLLSADKQKAV  455 (459)
T ss_pred             ceEEEEEcCCCchhhcccCCcce
Confidence            69999999999999999998876

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=100.00  E-value=1.3e-32  Score=208.04  Aligned_cols=230  Identities=21%  Similarity=0.300  Sum_probs=209.1

Q ss_pred             CcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCcee
Q 023822           35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL  114 (276)
Q Consensus        35 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~  114 (276)
                      ..+.++...|..+.+++|+.|.++.++|...++.+..+++|...|+.+.++|+...+++++.   |..|++|........
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSa---d~~i~vws~~~~s~~  296 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASA---DEIIRVWSVPLSSEP  296 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCC---cceEEeeccccccCc
Confidence            46888888888789999999999999999999999999999999999999999999999998   999999999888878


Q ss_pred             eeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEee----cCCCeeEecCCCcEEEEee-CCeEEEEec
Q 023822          115 RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV----QGRPAAAYDDQGLVFAVAF-GGYIRMFDA  189 (276)
Q Consensus       115 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~-d~~i~~~d~  189 (276)
                      .....|..+|+.+..+|.|.||++++.|+...+.|++++..+.....    -...+.+|+|||.++.++. |+.+++||+
T Consensus       297 ~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdl  376 (506)
T KOG0289|consen  297 TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDL  376 (506)
T ss_pred             cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEc
Confidence            88889999999999999999999999999999999999988776633    2356899999999999998 999999999


Q ss_pred             ccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEe
Q 023822          190 RKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG  269 (276)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  269 (276)
                      .....    ...+++|.++|..++|+.+|-+|+++++|+.|++||++..+..+++...  ....+.++.|.+.|++|+.+
T Consensus       377 ks~~~----~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~--~~~~v~s~~fD~SGt~L~~~  450 (506)
T KOG0289|consen  377 KSQTN----VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLD--EKKEVNSLSFDQSGTYLGIA  450 (506)
T ss_pred             CCccc----cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeecc--ccccceeEEEcCCCCeEEee
Confidence            98664    7788899999999999999999999999999999999999988888753  23479999999999999999


Q ss_pred             cCCC
Q 023822          270 RVSP  273 (276)
Q Consensus       270 ~~dg  273 (276)
                      +.|=
T Consensus       451 g~~l  454 (506)
T KOG0289|consen  451 GSDL  454 (506)
T ss_pred             ccee
Confidence            8763

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.9e-32  Score=219.87  Aligned_cols=235  Identities=16%  Similarity=0.287  Sum_probs=210.8

Q ss_pred             eeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEE
Q 023822           28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS  107 (276)
Q Consensus        28 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d  107 (276)
                      ..+.||...|.+++++.+...+++|+ .+.+++|+..+.++++++...  .+.+..|.|.+++++.|..   .|.+.+||
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k---~Gel~vfd  440 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTK---NGELQVFD  440 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEecc---CCceEEEE
Confidence            45679999999999999887777775 468999999999999999765  7899999999999999999   99999999


Q ss_pred             ccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCcee-----e--------eeE-eecCCCeeEecCCC
Q 023822          108 LHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC-----Q--------GLL-RVQGRPAAAYDDQG  173 (276)
Q Consensus       108 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-----~--------~~~-~~~~~~~~~~~~~~  173 (276)
                      +.+...+.+++.|.+.|++++.+||+..+++|+.|.+|++||..-...     .        .++ -...+.++.++||+
T Consensus       441 laS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg  520 (888)
T KOG0306|consen  441 LASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG  520 (888)
T ss_pred             eehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCC
Confidence            999999999999999999999999999999999999999999752211     1        111 23456799999999


Q ss_pred             cEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCC
Q 023822          174 LVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN  252 (276)
Q Consensus       174 ~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  252 (276)
                      ++++++- |+++++|-+.+.+-    ...+.+|.-||.|+.++||++++++||.|..|++|-+.-|.+-+.+.   +|..
T Consensus       521 k~LaVsLLdnTVkVyflDtlKF----flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f---AHdD  593 (888)
T KOG0306|consen  521 KLLAVSLLDNTVKVYFLDTLKF----FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF---AHDD  593 (888)
T ss_pred             cEEEEEeccCeEEEEEecceee----eeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh---cccC
Confidence            9999999 99999999998664    67788999999999999999999999999999999999999999998   8999


Q ss_pred             ceEEEEECCCCcEEEEecCCCCC
Q 023822          253 STLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       253 ~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      .|.++.|-|+...+.++|.|+.|
T Consensus       594 Svm~V~F~P~~~~FFt~gKD~kv  616 (888)
T KOG0306|consen  594 SVMSVQFLPKTHLFFTCGKDGKV  616 (888)
T ss_pred             ceeEEEEcccceeEEEecCcceE
Confidence            99999999999999999999875

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.2e-33  Score=209.21  Aligned_cols=241  Identities=16%  Similarity=0.257  Sum_probs=198.6

Q ss_pred             ccceeeccCCCcEEEEEEcCCC-CEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822           25 EVGMSFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (276)
Q Consensus        25 ~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i  103 (276)
                      ..+..|.||.+.|.|++=+|.. ..+++|+.||.|+|||+....+..++..|.+.|..+++..  ..+++++.   |.+|
T Consensus        57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgd---DKtv  131 (433)
T KOG0268|consen   57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGD---DKTV  131 (433)
T ss_pred             cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecC---Ccce
Confidence            3456679999999999999976 7899999999999999999999999999999999999975  56666666   7777


Q ss_pred             EEEEcc--------------------------------------CCceeeeecccCcceEEEEeccCCC-EEEEeeCCCe
Q 023822          104 RLLSLH--------------------------------------DNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRT  144 (276)
Q Consensus       104 ~~~d~~--------------------------------------~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~  144 (276)
                      +.|.++                                      ...+++.+.-..+.|.++.|+|-.. .|++|..|+.
T Consensus       132 K~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrs  211 (433)
T KOG0268|consen  132 KQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRS  211 (433)
T ss_pred             eeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCc
Confidence            777633                                      2223333444445678888988655 7788889999


Q ss_pred             EEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEE
Q 023822          145 VLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLML  222 (276)
Q Consensus       145 i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  222 (276)
                      |.+||+++..+++.+ .....+.++|+|.+..++++. |..++.||++..+.+   .....+|.+.|.++.|||.|+.++
T Consensus       212 IvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p---~~v~~dhvsAV~dVdfsptG~Efv  288 (433)
T KOG0268|consen  212 IVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRP---LNVHKDHVSAVMDVDFSPTGQEFV  288 (433)
T ss_pred             eEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhccc---chhhcccceeEEEeccCCCcchhc
Confidence            999999999998877 455567899999887777777 899999999986642   444567889999999999999999


Q ss_pred             EeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          223 LTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       223 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      +||.|.+|+||....+.....+...  --..|.++.||.|.+++++||+|+.|
T Consensus       289 sgsyDksIRIf~~~~~~SRdiYhtk--RMq~V~~Vk~S~Dskyi~SGSdd~nv  339 (433)
T KOG0268|consen  289 SGSYDKSIRIFPVNHGHSRDIYHTK--RMQHVFCVKYSMDSKYIISGSDDGNV  339 (433)
T ss_pred             cccccceEEEeecCCCcchhhhhHh--hhheeeEEEEeccccEEEecCCCcce
Confidence            9999999999999888776655432  24579999999999999999999976

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.9e-32  Score=218.29  Aligned_cols=243  Identities=21%  Similarity=0.254  Sum_probs=212.9

Q ss_pred             hccccceeeccCCCcEEEEEE-cCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCC
Q 023822           22 QSMEVGMSFRDYNGRISSMDF-HKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD  100 (276)
Q Consensus        22 ~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d  100 (276)
                      ..+++.+.+-|..+.|..++| .|+.++||.++..+.+|+|+..+..+. .+.+|...|.++....+|..|++++.   |
T Consensus       311 ~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sK---D  386 (775)
T KOG0319|consen  311 DELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSK---D  386 (775)
T ss_pred             cccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecC---C
Confidence            456777788898999999998 468899999999999999998877765 88999999999997778889999999   9


Q ss_pred             CceEEEEccCCc----eeeeecccCcceEEEEeccCC-CEEEEeeCCCeEEEEeccCceee-----------eeEeecCC
Q 023822          101 ESLRLLSLHDNK----YLRYFKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQ-----------GLLRVQGR  164 (276)
Q Consensus       101 ~~i~~~d~~~~~----~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~-----------~~~~~~~~  164 (276)
                      .++++|.++++.    ++....+|.+.|.+++++..+ .+|++++.|+++++|++...+..           ...|...+
T Consensus       387 ~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdI  466 (775)
T KOG0319|consen  387 KSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDI  466 (775)
T ss_pred             ceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccc
Confidence            999999885443    345667899999999997655 48999999999999999872211           11177789


Q ss_pred             CeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEE
Q 023822          165 PAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLST  243 (276)
Q Consensus       165 ~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  243 (276)
                      ++++++|+..++++++ |++.++|++.....    ...+.+|...+.++.|+|..+.++++|.|++|+||.+.+..++++
T Consensus       467 N~Vaia~ndkLiAT~SqDktaKiW~le~~~l----~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT  542 (775)
T KOG0319|consen  467 NCVAIAPNDKLIATGSQDKTAKIWDLEQLRL----LGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKT  542 (775)
T ss_pred             cceEecCCCceEEecccccceeeecccCceE----EEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeee
Confidence            9999999999999999 99999999995443    677889999999999999999999999999999999999999999


Q ss_pred             eecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          244 YNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       244 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      +.   +|...|..+.|-.+|+.|++++.||.+
T Consensus       543 ~e---GH~~aVlra~F~~~~~qliS~~adGli  571 (775)
T KOG0319|consen  543 FE---GHTSAVLRASFIRNGKQLISAGADGLI  571 (775)
T ss_pred             ec---CccceeEeeeeeeCCcEEEeccCCCcE
Confidence            99   899999999999999999999999975

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=2.6e-31  Score=188.93  Aligned_cols=238  Identities=15%  Similarity=0.218  Sum_probs=206.5

Q ss_pred             ccccceeeccCCCcEEEEEEcC-CCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCC
Q 023822           23 SMEVGMSFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE  101 (276)
Q Consensus        23 ~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~  101 (276)
                      .+......++|.+.|-.++|+| ....|++++.|.+|++||+..+++...+....+ -.-+.|+|++++++++..   |.
T Consensus        53 r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~e-ni~i~wsp~g~~~~~~~k---dD  128 (313)
T KOG1407|consen   53 RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGE-NINITWSPDGEYIAVGNK---DD  128 (313)
T ss_pred             hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCc-ceEEEEcCCCCEEEEecC---cc
Confidence            3344455789999999999998 567899999999999999999999988876543 445889999999999998   99


Q ss_pred             ceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecCCC--eeEecCCCcEEEEe
Q 023822          102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVFAVA  179 (276)
Q Consensus       102 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~  179 (276)
                      .|...|.++.+.....+ ....+..++|+.++++|+.....|.|.|.....-+++..+..++..  |+.|+|+|+++++|
T Consensus       129 ~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~G  207 (313)
T KOG1407|consen  129 RITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATG  207 (313)
T ss_pred             cEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeec
Confidence            99999999888776654 4566788999988888777777899999999999999998666655  67889999999999


Q ss_pred             e-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEE
Q 023822          180 F-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS  258 (276)
Q Consensus       180 ~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~  258 (276)
                      + |..+.+||+...-+    ...+..+.-+|..+.|+.+|++||++|+|-.|-|=++++|..+..+.    +.++...++
T Consensus       208 sADAlvSLWD~~ELiC----~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~----~~~~t~tVA  279 (313)
T KOG1407|consen  208 SADALVSLWDVDELIC----ERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP----CEGPTFTVA  279 (313)
T ss_pred             cccceeeccChhHhhh----heeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee----ccCCceeEE
Confidence            9 99999999987554    55667788899999999999999999999999999999999999998    889999999


Q ss_pred             ECCCCcEEEEecCCC
Q 023822          259 FSPEGMFVISGRVSP  273 (276)
Q Consensus       259 ~s~~g~~l~~~~~dg  273 (276)
                      |+|...+||.+.+|.
T Consensus       280 WHPk~~LLAyA~ddk  294 (313)
T KOG1407|consen  280 WHPKRPLLAYACDDK  294 (313)
T ss_pred             ecCCCceeeEEecCC
Confidence            999999999988875

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=3.5e-32  Score=198.06  Aligned_cols=241  Identities=18%  Similarity=0.260  Sum_probs=199.4

Q ss_pred             eeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccC------------C------eeeeeeeeeeeceEEEEEeccCC
Q 023822           28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA------------A------TCLKTINSKKYGVDLVCFTSHPT   89 (276)
Q Consensus        28 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~------------~------~~~~~~~~~~~~v~~~~~~~~~~   89 (276)
                      ..+..|++++.+.+|+|||.++|+|+.|-.|+|.|++.            +      -.++++..|..+|+++.|+|...
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~  185 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET  185 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence            45678999999999999999999999999999999861            1      24567778889999999999999


Q ss_pred             eEEEeccCCCCCceEEEEccCCceeeeec--ccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE-----eec
Q 023822           90 TVIYSSKNGWDESLRLLSLHDNKYLRYFK--GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-----RVQ  162 (276)
Q Consensus        90 ~l~~~~~~~~d~~i~~~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~  162 (276)
                      .|++++.   |++|+++|+......+.++  ....+|.++.|+|.|.+|+.|.....+++||+++.++...-     +..
T Consensus       186 ILiS~sr---D~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~  262 (430)
T KOG0640|consen  186 ILISGSR---DNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG  262 (430)
T ss_pred             eEEeccC---CCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence            9999998   9999999987654333222  24568999999999999999999999999999998876544     556


Q ss_pred             CCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEE
Q 023822          163 GRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL  241 (276)
Q Consensus       163 ~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  241 (276)
                      .+.++.+++.+++.++++ ||.|++||--+.++  +..+........|.+..|..+|+|+++.+.|..+++|++.+++.+
T Consensus       263 ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rC--v~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l  340 (430)
T KOG0640|consen  263 AITQVRYSSTGSLYVTASKDGAIKLWDGVSNRC--VRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRML  340 (430)
T ss_pred             ceeEEEecCCccEEEEeccCCcEEeeccccHHH--HHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceE
Confidence            688999999999988888 99999999766554  112222334568999999999999999999999999999999888


Q ss_pred             EEeecC----------------------------------------------CCCCCceEEEEECCCCcEEEEecCCC
Q 023822          242 STYNVK----------------------------------------------PVSRNSTLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       242 ~~~~~~----------------------------------------------~~~~~~v~~~~~s~~g~~l~~~~~dg  273 (276)
                      ..+...                                              .+|.+.+..+.-||.+.-+.+|+.|-
T Consensus       341 ~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~  418 (430)
T KOG0640|consen  341 KEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF  418 (430)
T ss_pred             EEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccc
Confidence            876532                                              15777888888888888888888773

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=1.5e-32  Score=212.11  Aligned_cols=242  Identities=17%  Similarity=0.295  Sum_probs=189.0

Q ss_pred             ccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCee----eeee-eeeeeceEEEEEeccCCeEEEeccCCC
Q 023822           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATC----LKTI-NSKKYGVDLVCFTSHPTTVIYSSKNGW   99 (276)
Q Consensus        25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~~~   99 (276)
                      .....+++|+..|.++++.|.|..|++|+.|.+|++||+.....    -+.+ ......|.++.|++.+..|++.+.   
T Consensus       158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg---  234 (641)
T KOG0772|consen  158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG---  234 (641)
T ss_pred             cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec---
Confidence            34456889999999999999999999999999999999874321    1222 233457999999999999999887   


Q ss_pred             CCceEEEEccCCceee------------eecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCceeee-eEe-----
Q 023822          100 DESLRLLSLHDNKYLR------------YFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQG-LLR-----  160 (276)
Q Consensus       100 d~~i~~~d~~~~~~~~------------~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~-~~~-----  160 (276)
                      ....+++|-...+...            .-++|...++|.+|+|..+ .|++++.||++++||+...+... .+.     
T Consensus       235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~  314 (641)
T KOG0772|consen  235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG  314 (641)
T ss_pred             CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCC
Confidence            8899999966544332            2357999999999999765 89999999999999998764333 221     


Q ss_pred             --ecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCC--CceEEEECCCCcEEEEeecCCcEEEEEC
Q 023822          161 --VQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDIS--DANVVKFSNDGRLMLLTTMEGHIHVLDS  235 (276)
Q Consensus       161 --~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~i~d~  235 (276)
                        .-.+..++|++++.++|++. ||.|.+|+.++....+.. .....|..  .|++++||++|++|++-+.|+++++||+
T Consensus       315 g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~-~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDL  393 (641)
T KOG0772|consen  315 GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVM-KVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDL  393 (641)
T ss_pred             CcccCceeeecCCCcchhhhcccCCceeeeecCCcccccce-EeeeccCCCCceeEEEeccccchhhhccCCCceeeeec
Confidence              12345899999999999888 999999998765543332 23345554  8999999999999999999999999999


Q ss_pred             CCCc-EEEEeecCCCCCCceEEEEECCCCcEEEEecC
Q 023822          236 FRGT-LLSTYNVKPVSRNSTLEASFSPEGMFVISGRV  271 (276)
Q Consensus       236 ~~~~-~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  271 (276)
                      +..+ ++......+ ..-+-+.++|||+.++|++|+.
T Consensus       394 rq~kkpL~~~tgL~-t~~~~tdc~FSPd~kli~TGtS  429 (641)
T KOG0772|consen  394 RQFKKPLNVRTGLP-TPFPGTDCCFSPDDKLILTGTS  429 (641)
T ss_pred             cccccchhhhcCCC-ccCCCCccccCCCceEEEeccc
Confidence            8754 444444322 4456678999999999999875

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.8e-30  Score=181.52  Aligned_cols=238  Identities=18%  Similarity=0.274  Sum_probs=197.9

Q ss_pred             eeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCe-----eeeeeeeeeeceEEEEEecc----CCeEEEeccCC
Q 023822           28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT-----CLKTINSKKYGVDLVCFTSH----PTTVIYSSKNG   98 (276)
Q Consensus        28 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~~~   98 (276)
                      +.-+.|.+.|+|.+|+|+|++|++|+.|.+|++.-.+...     .-.++..|.+.|..++|..+    +..+++++.+ 
T Consensus        83 kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gag-  161 (350)
T KOG0641|consen   83 KRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAG-  161 (350)
T ss_pred             eeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCC-
Confidence            3346799999999999999999999999999987665332     23457788999999999754    3456666653 


Q ss_pred             CCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE----ee-----cCCCeeEe
Q 023822           99 WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL----RV-----QGRPAAAY  169 (276)
Q Consensus        99 ~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~-----~~~~~~~~  169 (276)
                       |..|++-|...++..+.+.+|.+.|.++ ++-++-++++|++|.+|++||++-..++..+    +.     ..+..++.
T Consensus       162 -dc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~v  239 (350)
T KOG0641|consen  162 -DCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAV  239 (350)
T ss_pred             -cceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEE
Confidence             8888888999999999999999999887 3447789999999999999999998888776    22     33568899


Q ss_pred             cCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCC--c--EEEEe
Q 023822          170 DDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG--T--LLSTY  244 (276)
Q Consensus       170 ~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~--~~~~~  244 (276)
                      .|.|++|+++. |....+||++.++.    +..+..|...|.++.|+|...|+++++.|..|++-|++..  +  .+...
T Consensus       240 dpsgrll~sg~~dssc~lydirg~r~----iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv  315 (350)
T KOG0641|consen  240 DPSGRLLASGHADSSCMLYDIRGGRM----IQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVV  315 (350)
T ss_pred             CCCcceeeeccCCCceEEEEeeCCce----eeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEE
Confidence            99999999998 89999999998775    6777889999999999999999999999999999998532  1  12223


Q ss_pred             ecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          245 NVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       245 ~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      .   .|+..+..+.|+|..--+++.+.|.++
T Consensus       316 ~---ehkdk~i~~rwh~~d~sfisssadkt~  343 (350)
T KOG0641|consen  316 A---EHKDKAIQCRWHPQDFSFISSSADKTA  343 (350)
T ss_pred             E---eccCceEEEEecCccceeeeccCcceE
Confidence            3   488889999999999999999999875

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.7e-32  Score=200.06  Aligned_cols=237  Identities=18%  Similarity=0.295  Sum_probs=203.6

Q ss_pred             cCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeee--------eeeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822           32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTI--------NSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (276)
Q Consensus        32 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i  103 (276)
                      +..+-+.|..|+|||++|++|+.||.|.+||..+|+....+        -.+..+|.|+.|+.|...+++|+.   ||.|
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsq---DGkI  287 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQ---DGKI  287 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCc---CCcE
Confidence            44567889999999999999999999999999998765543        345678999999999999999998   9999


Q ss_pred             EEEEccCCceeeeec-ccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee
Q 023822          104 RLLSLHDNKYLRYFK-GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF  180 (276)
Q Consensus       104 ~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~  180 (276)
                      ++|.+++|.+++.+. .|...|+++.|+.|+..+++++.|.++++.-++++++++.+  |..-++...|.++|..+++++
T Consensus       288 KvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaS  367 (508)
T KOG0275|consen  288 KVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISAS  367 (508)
T ss_pred             EEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEec
Confidence            999999999999986 89999999999999999999999999999999999999999  455578899999997776666


Q ss_pred             -CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCC-cEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEE
Q 023822          181 -GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS  258 (276)
Q Consensus       181 -d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~  258 (276)
                       ||+|++|+.++.++  ...+...+...+|+++..-|.. ..++++...++|.|.++ .|+.++.+.......+...+.+
T Consensus       368 sDgtvkvW~~KtteC--~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~  444 (508)
T KOG0275|consen  368 SDGTVKVWHGKTTEC--LSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAI  444 (508)
T ss_pred             CCccEEEecCcchhh--hhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEE
Confidence             99999999998664  2344445566788998888854 67888889999999996 6888888874433566777889


Q ss_pred             ECCCCcEEEEecCCCC
Q 023822          259 FSPEGMFVISGRVSPF  274 (276)
Q Consensus       259 ~s~~g~~l~~~~~dg~  274 (276)
                      .||.|.+++..++|+.
T Consensus       445 lSpkGewiYcigED~v  460 (508)
T KOG0275|consen  445 LSPKGEWIYCIGEDGV  460 (508)
T ss_pred             ecCCCcEEEEEccCcE
Confidence            9999999999999985

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.1e-32  Score=202.22  Aligned_cols=242  Identities=18%  Similarity=0.308  Sum_probs=208.1

Q ss_pred             ccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeee-eeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (276)
Q Consensus        25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i  103 (276)
                      +....|.-|..+|.|+.|+.|...||+|+.||.|++|.+.+|.+++.+. .|...|+++.|+.|+..+++++.   |.++
T Consensus       254 QAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sf---D~tv  330 (508)
T KOG0275|consen  254 QAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASF---DQTV  330 (508)
T ss_pred             hhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccc---cceE
Confidence            3344466688999999999999999999999999999999999999997 89999999999999999999998   9999


Q ss_pred             EEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEee----cCCCeeEecCCC-cEEEE
Q 023822          104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV----QGRPAAAYDDQG-LVFAV  178 (276)
Q Consensus       104 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~-~~l~~  178 (276)
                      ++.-+.+|+++..+++|...|+...|.++|..+++++.||+|++|+.++.++..++..    .++..+..-|.+ ..+++
T Consensus       331 RiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iV  410 (508)
T KOG0275|consen  331 RIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIV  410 (508)
T ss_pred             EEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEE
Confidence            9999999999999999999999999999999999999999999999999999988833    235566666644 44444


Q ss_pred             ee-CCeEEEEecccCCCCCeeeeee-cCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEE
Q 023822          179 AF-GGYIRMFDARKYEKGPFDIFSV-GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE  256 (276)
Q Consensus       179 ~~-d~~i~~~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~  256 (276)
                      +. .+++++.++...-   ...+.. ....+...+++.+|.|.++++.++|+.++.|...+|++-..+.   .|+..+..
T Consensus       411 CNrsntv~imn~qGQv---VrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~---VhEkdvIG  484 (508)
T KOG0275|consen  411 CNRSNTVYIMNMQGQV---VRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLP---VHEKDVIG  484 (508)
T ss_pred             EcCCCeEEEEeccceE---EeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeee---cccccccc
Confidence            44 8999999987522   111211 1233467788899999999999999999999999999999998   68889999


Q ss_pred             EEECCCCcEEEEecCCCCC
Q 023822          257 ASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       257 ~~~s~~g~~l~~~~~dg~v  275 (276)
                      ++-+|..+.||+-++||+.
T Consensus       485 l~HHPHqNllAsYsEDgll  503 (508)
T KOG0275|consen  485 LTHHPHQNLLASYSEDGLL  503 (508)
T ss_pred             cccCcccchhhhhcccchh
Confidence            9999999999999999974

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.9e-31  Score=202.04  Aligned_cols=231  Identities=18%  Similarity=0.263  Sum_probs=196.8

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccC
Q 023822           31 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD  110 (276)
Q Consensus        31 ~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~  110 (276)
                      ++|...|.+++.++||++||+|+.|..|.||+..+.+.+..+.+|.+.|.+++|-.....+++++.   |+.+++|+++.
T Consensus       199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~---Drsvkvw~~~~  275 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASA---DRSVKVWSIDQ  275 (479)
T ss_pred             ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeec---CCceEEEehhH
Confidence            489999999999999999999999999999999999999999999999999999999899999998   99999999999


Q ss_pred             CceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEeeCCeEEEEec
Q 023822          111 NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAFGGYIRMFDA  189 (276)
Q Consensus       111 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~  189 (276)
                      ...+.++.+|++.|..+....-++.+.+|+.|+++++|++......... +...+.|++|-.+..++.++.+|.|.+|++
T Consensus       276 ~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~  355 (479)
T KOG0299|consen  276 LSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSL  355 (479)
T ss_pred             hHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeee
Confidence            9999999999999999999888888888889999999999543322222 444677999999999999998999999999


Q ss_pred             ccCCCCCeeeeeecC----------CCCCceEEEECCCCcEEEEeecCCcEEEEECCCC----cEEEEeecCCCCCCceE
Q 023822          190 RKYEKGPFDIFSVGG----------DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG----TLLSTYNVKPVSRNSTL  255 (276)
Q Consensus       190 ~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~~~~v~  255 (276)
                      .+.+  ++.......          ++..|++++..|...++|+|+.+|.|++|-+.++    .++..+.    ..+-|+
T Consensus       356 ~KKk--plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls----~~GfVN  429 (479)
T KOG0299|consen  356 LKKK--PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS----LVGFVN  429 (479)
T ss_pred             cccC--ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc----cccEEE
Confidence            8744  332222211          2237899999999999999999999999999877    3344443    678999


Q ss_pred             EEEECCCCcEEEEec
Q 023822          256 EASFSPEGMFVISGR  270 (276)
Q Consensus       256 ~~~~s~~g~~l~~~~  270 (276)
                      +++|+++|+++++|-
T Consensus       430 sl~f~~sgk~ivagi  444 (479)
T KOG0299|consen  430 SLAFSNSGKRIVAGI  444 (479)
T ss_pred             EEEEccCCCEEEEec
Confidence            999999999777663

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=4.3e-30  Score=209.56  Aligned_cols=232  Identities=14%  Similarity=0.172  Sum_probs=179.4

Q ss_pred             CcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeee-------------eeeeeeeeceEEEEEec-cCCeEEEeccCCCC
Q 023822           35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL-------------KTINSKKYGVDLVCFTS-HPTTVIYSSKNGWD  100 (276)
Q Consensus        35 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-------------~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~d  100 (276)
                      ..|.....++++..+++++.+.....|+...+..+             ..+.+|.+.|.+++|+| ++..|++++.   |
T Consensus        21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~---D   97 (493)
T PTZ00421         21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASE---D   97 (493)
T ss_pred             eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeC---C
Confidence            44555666677667777777777777775433222             13668899999999999 7889999998   9


Q ss_pred             CceEEEEccCC-------ceeeeecccCcceEEEEeccCC-CEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEec
Q 023822          101 ESLRLLSLHDN-------KYLRYFKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYD  170 (276)
Q Consensus       101 ~~i~~~d~~~~-------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~  170 (276)
                      +.|++||+.++       +++..+.+|...|.+++|+|++ ++|++++.|++|++||+++++....+  +...+.+++|+
T Consensus        98 gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~s  177 (493)
T PTZ00421         98 GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWN  177 (493)
T ss_pred             CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEE
Confidence            99999999765       3466788999999999999985 69999999999999999999887777  45568899999


Q ss_pred             CCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCC-ceEEEECCCCcEEEEee----cCCcEEEEECCCCcE-EEE
Q 023822          171 DQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISD-ANVVKFSNDGRLMLLTT----MEGHIHVLDSFRGTL-LST  243 (276)
Q Consensus       171 ~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~-~~~  243 (276)
                      |++.++++++ |+.|++||+++++.    ...+..|... ...+.|.+++..+++++    .|+.|++||+++... +..
T Consensus       178 pdG~lLatgs~Dg~IrIwD~rsg~~----v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~  253 (493)
T PTZ00421        178 LDGSLLCTTSKDKKLNIIDPRDGTI----VSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYST  253 (493)
T ss_pred             CCCCEEEEecCCCEEEEEECCCCcE----EEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeE
Confidence            9999888887 99999999998653    4455566544 45678999887777654    478999999987553 333


Q ss_pred             eecCCCCCCceEEEEECCCCcEEEEecC-CCCC
Q 023822          244 YNVKPVSRNSTLEASFSPEGMFVISGRV-SPFS  275 (276)
Q Consensus       244 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~v  275 (276)
                      ...  .....+....|++++++|++++. ||.|
T Consensus       254 ~~~--d~~~~~~~~~~d~d~~~L~lggkgDg~I  284 (493)
T PTZ00421        254 VDL--DQSSALFIPFFDEDTNLLYIGSKGEGNI  284 (493)
T ss_pred             ecc--CCCCceEEEEEcCCCCEEEEEEeCCCeE
Confidence            321  13345666789999999998874 8765

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=3.6e-32  Score=208.12  Aligned_cols=204  Identities=14%  Similarity=0.237  Sum_probs=176.9

Q ss_pred             ccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccC-CeEEEeccCCCCC
Q 023822           23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP-TTVIYSSKNGWDE  101 (276)
Q Consensus        23 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~d~  101 (276)
                      ....++++.+|..+|..++|+++|..+++++.|+.+++||+++|+++..+... ..+.++.|+|++ +.+++|+.   |+
T Consensus       247 ~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~-~~~~cvkf~pd~~n~fl~G~s---d~  322 (503)
T KOG0282|consen  247 DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLD-KVPTCVKFHPDNQNIFLVGGS---DK  322 (503)
T ss_pred             CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecC-CCceeeecCCCCCcEEEEecC---CC
Confidence            45677899999999999999999999999999999999999999999988754 368999999999 66777776   99


Q ss_pred             ceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE----------------------
Q 023822          102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL----------------------  159 (276)
Q Consensus       102 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----------------------  159 (276)
                      .|+.||+++++.++.+..|-+.|..+.|-++++++++.+.|+++++|+.+.+-.++.+                      
T Consensus       323 ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~a  402 (503)
T KOG0282|consen  323 KIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAA  402 (503)
T ss_pred             cEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehh
Confidence            9999999999999999999999999999999999999999999999998754322211                      


Q ss_pred             ------------------------eecC----CCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCce
Q 023822          160 ------------------------RVQG----RPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDAN  210 (276)
Q Consensus       160 ------------------------~~~~----~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~  210 (276)
                                              ..+.    ...+.|+|||.+|++|. ||.+.+||.++-+.    +..+..|..++.
T Consensus       403 Qs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl----~~~lkah~~~ci  478 (503)
T KOG0282|consen  403 QSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKL----VSKLKAHDQPCI  478 (503)
T ss_pred             hccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhh----hhccccCCcceE
Confidence                                    0000    12578999999999998 99999999998665    666788899999


Q ss_pred             EEEECCCC-cEEEEeecCCcEEEEE
Q 023822          211 VVKFSNDG-RLMLLTTMEGHIHVLD  234 (276)
Q Consensus       211 ~~~~~~~~-~~l~~~~~dg~i~i~d  234 (276)
                      .+.|+|.. ..+|+++.||.|++||
T Consensus       479 ~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  479 GVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             EEEecCCCcceeEecccCceeEecC
Confidence            99999965 6799999999999996

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.4e-30  Score=188.80  Aligned_cols=230  Identities=19%  Similarity=0.270  Sum_probs=178.2

Q ss_pred             cCCCcEEEEEEcC-CCCEEEEeecCCeEEEEEccC-Ceee-eeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEc
Q 023822           32 DYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTA-ATCL-KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL  108 (276)
Q Consensus        32 ~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~  108 (276)
                      .-.+.|.+++||| ...+++++|.|++||+|+++. |... +....|.++|.+++|+.++..+++++.   |+.+++||+
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~---Dk~~k~wDL  101 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGC---DKQAKLWDL  101 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeecc---CCceEEEEc
Confidence            3467899999999 566777999999999999986 3332 334578899999999999999999998   999999999


Q ss_pred             cCCceeeeecccCcceEEEEeccCCC--EEEEeeCCCeEEEEeccCceeeeeEeecC-----------------------
Q 023822          109 HDNKYLRYFKGHHDRVVSLSLCSSKD--CFISGSLDRTVLLWDQRAEKCQGLLRVQG-----------------------  163 (276)
Q Consensus       109 ~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----------------------  163 (276)
                      .+++ +..+..|.++|..+.|-+...  .|++|+.|.+|+.||+|...++..+....                       
T Consensus       102 ~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~v  180 (347)
T KOG0647|consen  102 ASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAV  180 (347)
T ss_pred             cCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEE
Confidence            9995 556677999999999987665  89999999999999999877665542211                       


Q ss_pred             --------------------CCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCC---------CCCceEEE
Q 023822          164 --------------------RPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGD---------ISDANVVK  213 (276)
Q Consensus       164 --------------------~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~---------~~~i~~~~  213 (276)
                                          +++++..++....+.|+ +|.+.+..+..+...  ..+.+.-|         -..|++|+
T Consensus       181 ynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~--~nFtFkCHR~~~~~~~~VYaVNsi~  258 (347)
T KOG0647|consen  181 YNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPK--DNFTFKCHRSTNSVNDDVYAVNSIA  258 (347)
T ss_pred             EEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCcc--CceeEEEeccCCCCCCceEEecceE
Confidence                                12444444444444444 777777766653211  12222222         23578899


Q ss_pred             ECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEec
Q 023822          214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGR  270 (276)
Q Consensus       214 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  270 (276)
                      |+|....|++++.||+..+||-.....++..+   .+..+|++.+|+.+|.++|.+.
T Consensus       259 FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~---~~~qpItcc~fn~~G~ifaYA~  312 (347)
T KOG0647|consen  259 FHPVHGTLVTAGSDGTFSFWDKDARTKLKTSE---THPQPITCCSFNRNGSIFAYAL  312 (347)
T ss_pred             eecccceEEEecCCceEEEecchhhhhhhccC---cCCCccceeEecCCCCEEEEEe
Confidence            99998899999999999999988888887777   6889999999999999987764

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=1.4e-29  Score=207.82  Aligned_cols=216  Identities=16%  Similarity=0.177  Sum_probs=171.5

Q ss_pred             eecCCeEEEEEccCCeeeeeeeeeeeceEEEEEecc-CCeEEEeccCCCCCceEEEEccCCc--------eeeeecccCc
Q 023822           52 ASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH-PTTVIYSSKNGWDESLRLLSLHDNK--------YLRYFKGHHD  122 (276)
Q Consensus        52 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~d~~i~~~d~~~~~--------~~~~~~~~~~  122 (276)
                      |+.++.+++|+......+..+.+|..+|.+++|+|+ +..|++++.   |+.|++||+.++.        ++..+.+|..
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~---DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~  126 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSE---DLTIRVWEIPHNDESVKEIKDPQCILKGHKK  126 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeC---CCeEEEEECCCCCccccccccceEEeecCCC
Confidence            567889999998887888889999999999999997 788999988   9999999997642        3446788999


Q ss_pred             ceEEEEeccCCCE-EEEeeCCCeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeee
Q 023822          123 RVVSLSLCSSKDC-FISGSLDRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDI  199 (276)
Q Consensus       123 ~i~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~  199 (276)
                      .|.+++|+|++.. |++++.|++|++||+++++....+ +...+.+++|+|+|.+|++++ |+.|++||+++++.    .
T Consensus       127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~----i  202 (568)
T PTZ00420        127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI----A  202 (568)
T ss_pred             cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcE----E
Confidence            9999999998875 578999999999999998876665 445678999999999998877 89999999998654    4


Q ss_pred             eeecCCCCCceE-----EEECCCCcEEEEeecCC----cEEEEECCC-CcEEEEeecCCCCCCceEEEEECCCCcEEEEe
Q 023822          200 FSVGGDISDANV-----VKFSNDGRLMLLTTMEG----HIHVLDSFR-GTLLSTYNVKPVSRNSTLEASFSPEGMFVISG  269 (276)
Q Consensus       200 ~~~~~~~~~i~~-----~~~~~~~~~l~~~~~dg----~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  269 (276)
                      ..+.+|...+..     ..|++++.+|++++.|+    .|+|||+++ ++++..+... .+.+.+......++|.++++|
T Consensus       203 ~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld-~~~~~L~p~~D~~tg~l~lsG  281 (568)
T PTZ00420        203 SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSID-NASAPLIPHYDESTGLIYLIG  281 (568)
T ss_pred             EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEec-CCccceEEeeeCCCCCEEEEE
Confidence            556677665433     33568889999987764    799999985 5566555422 233444444446678999999


Q ss_pred             cCCCCC
Q 023822          270 RVSPFS  275 (276)
Q Consensus       270 ~~dg~v  275 (276)
                      +.|+++
T Consensus       282 kGD~tI  287 (568)
T PTZ00420        282 KGDGNC  287 (568)
T ss_pred             ECCCeE
Confidence            999875

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=100.00  E-value=2.1e-30  Score=196.25  Aligned_cols=242  Identities=16%  Similarity=0.265  Sum_probs=207.3

Q ss_pred             cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i  103 (276)
                      -+....++||...|+.+.|+|+...+++++.|..|+||.............|..+|+.+..+|.+.||++++.   |+..
T Consensus       251 ~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~---d~~w  327 (506)
T KOG0289|consen  251 NQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASN---DGTW  327 (506)
T ss_pred             hhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecC---CceE
Confidence            3456788999999999999999999999999999999999988888889999999999999999999999998   9999


Q ss_pred             EEEEccCCceeeeecc--cCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEe
Q 023822          104 RLLSLHDNKYLRYFKG--HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVA  179 (276)
Q Consensus       104 ~~~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~  179 (276)
                      .+.|++++..+.....  ..-.+++.+|+|||.+|.+|..|+.|++||+.++.....|  |..++..++|+.+|.+|+++
T Consensus       328 ~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~  407 (506)
T KOG0289|consen  328 AFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATA  407 (506)
T ss_pred             EEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEE
Confidence            9999999988766543  2235899999999999999999999999999999888777  67778899999999999999


Q ss_pred             e-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECC--CCcEEEEeecCCCCCCceEE
Q 023822          180 F-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF--RGTLLSTYNVKPVSRNSTLE  256 (276)
Q Consensus       180 ~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~v~~  256 (276)
                      . |+.|++||+|..+.  +..+.+... .++.++.|.+.|.+|+.++.|=.|++++-.  +..++..+.   .|.+..+.
T Consensus       408 add~~V~lwDLRKl~n--~kt~~l~~~-~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~---~~sg~st~  481 (506)
T KOG0289|consen  408 ADDGSVKLWDLRKLKN--FKTIQLDEK-KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELA---DHSGLSTG  481 (506)
T ss_pred             ecCCeEEEEEehhhcc--cceeecccc-ccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhh---hcccccce
Confidence            8 68899999998653  334444333 379999999999999999887677777633  445555555   57788999


Q ss_pred             EEECCCCcEEEEecCCCC
Q 023822          257 ASFSPEGMFVISGRVSPF  274 (276)
Q Consensus       257 ~~~s~~g~~l~~~~~dg~  274 (276)
                      +.|....++++++|.|..
T Consensus       482 v~Fg~~aq~l~s~smd~~  499 (506)
T KOG0289|consen  482 VRFGEHAQYLASTSMDAI  499 (506)
T ss_pred             eeecccceEEeeccchhh
Confidence            999999999999998854

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=1.2e-31  Score=212.07  Aligned_cols=227  Identities=22%  Similarity=0.363  Sum_probs=197.6

Q ss_pred             EEEEc-CCCCEEEEeecCCeEEEEEccCCe------eeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCC
Q 023822           39 SMDFH-KSSSYLVTASDDESIRLYDVTAAT------CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN  111 (276)
Q Consensus        39 ~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~  111 (276)
                      .+..+ |.+++|++|+.||.|++|+...-.      ....++.|...|..+....+++.+++++.   |-+|++|+...+
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~Ss---DtTVK~W~~~~~  105 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASS---DTTVKVWNAHKD  105 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecC---CceEEEeecccC
Confidence            44444 367789999999999999986322      36778899999999999999999999998   999999999877


Q ss_pred             --ceeeeecccCcceEEEEe-ccCCCEEEEeeCCCeEEEEeccCcee--eeeE-----------eecCCCeeEecCCCcE
Q 023822          112 --KYLRYFKGHHDRVVSLSL-CSSKDCFISGSLDRTVLLWDQRAEKC--QGLL-----------RVQGRPAAAYDDQGLV  175 (276)
Q Consensus       112 --~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~-----------~~~~~~~~~~~~~~~~  175 (276)
                        -+..++..|.+.|.|+++ .++..++|+|+-|+.|.+||+.++..  +..+           +...+.+++.++.+.+
T Consensus       106 ~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~  185 (735)
T KOG0308|consen  106 NTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI  185 (735)
T ss_pred             cchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence              567788999999999999 77888999999999999999997732  2222           2334668899999988


Q ss_pred             EEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCce
Q 023822          176 FAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNST  254 (276)
Q Consensus       176 l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  254 (276)
                      ++.|+ ++.+++||.++.++    +..+.+|...|..+..++||..++++|.||+|++||+...+++.++.   .|...|
T Consensus       186 ivsGgtek~lr~wDprt~~k----imkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~---vH~e~V  258 (735)
T KOG0308|consen  186 IVSGGTEKDLRLWDPRTCKK----IMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI---VHKEGV  258 (735)
T ss_pred             EEecCcccceEEeccccccc----eeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE---eccCce
Confidence            88887 89999999999776    77778999999999999999999999999999999999999999998   688889


Q ss_pred             EEEEECCCCcEEEEecCCCCC
Q 023822          255 LEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       255 ~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      +++.-+|+=.++++|+.||.|
T Consensus       259 WaL~~~~sf~~vYsG~rd~~i  279 (735)
T KOG0308|consen  259 WALQSSPSFTHVYSGGRDGNI  279 (735)
T ss_pred             EEEeeCCCcceEEecCCCCcE
Confidence            999999999999999999975

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.98  E-value=2.8e-30  Score=211.11  Aligned_cols=232  Identities=19%  Similarity=0.325  Sum_probs=198.0

Q ss_pred             ceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEE
Q 023822           27 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL  106 (276)
Q Consensus        27 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~  106 (276)
                      ...+.||.+.|.++++..-+.+|++|+.|.++++||..+|++...+.+|...+.++..  ....+++|+.   |.+|++|
T Consensus       242 ~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~--~~~~~~sgs~---D~tVkVW  316 (537)
T KOG0274|consen  242 LTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI--DPFLLVSGSR---DNTVKVW  316 (537)
T ss_pred             EeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc--cCceEeeccC---CceEEEE
Confidence            3348999999999999887889999999999999999999999999999999998887  4556677676   9999999


Q ss_pred             EccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEeeCCeE
Q 023822          107 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAFGGYI  184 (276)
Q Consensus       107 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~d~~i  184 (276)
                      ++.++..+..+.+|.++|.++..+  +.++++|+.|++|++||+.++++++.+  |...+.++.+.+...++.++.|+.|
T Consensus       317 ~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~I  394 (537)
T KOG0274|consen  317 DVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTI  394 (537)
T ss_pred             eccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccce
Confidence            999999999999999999999996  789999999999999999999999999  5555667777666555555559999


Q ss_pred             EEEecccC-CCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCC
Q 023822          185 RMFDARKY-EKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG  263 (276)
Q Consensus       185 ~~~d~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  263 (276)
                      ++||+++. +.    +..+.+|..-+..+.+  .+++|++++.|+.|++||..++++++.+...  +.+.|..+++.  .
T Consensus       395 kvWdl~~~~~c----~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~--~~~~v~~l~~~--~  464 (537)
T KOG0274|consen  395 KVWDLRTKRKC----IHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR--HVGGVSALALG--K  464 (537)
T ss_pred             EeecCCchhhh----hhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccC--CcccEEEeecC--c
Confidence            99999987 44    6667778777766554  5678999999999999999999999999831  56888888876  3


Q ss_pred             cEEEEecCCCCC
Q 023822          264 MFVISGRVSPFS  275 (276)
Q Consensus       264 ~~l~~~~~dg~v  275 (276)
                      ..+++++.||.+
T Consensus       465 ~~il~s~~~~~~  476 (537)
T KOG0274|consen  465 EEILCSSDDGSV  476 (537)
T ss_pred             ceEEEEecCCee
Confidence            567788888764

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.97  E-value=4.5e-30  Score=185.97  Aligned_cols=203  Identities=18%  Similarity=0.334  Sum_probs=164.5

Q ss_pred             ccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEE----------------------
Q 023822           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLV----------------------   82 (276)
Q Consensus        25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~----------------------   82 (276)
                      +....+++|.++|..+.|.+|++.+++++.|.+++.||+++|+.++.++.|..-|..+                      
T Consensus        81 eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~  160 (338)
T KOG0265|consen   81 ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLW  160 (338)
T ss_pred             cceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEE
Confidence            3345677999999999999999999999999999999999999888777665544444                      


Q ss_pred             --------------------EEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCC
Q 023822           83 --------------------CFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLD  142 (276)
Q Consensus        83 --------------------~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  142 (276)
                                          .|...+..+.+|+-   |+.|++||++.+.....+.+|.++|+.+..+|+|.++.+-+.|
T Consensus       161 D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggI---dn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd  237 (338)
T KOG0265|consen  161 DIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGI---DNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMD  237 (338)
T ss_pred             eecccchhhccccceeEEEEEecccccceeeccc---cCceeeeccccCcceEEeecccCceeeEEeccCCCcccccccc
Confidence                                44444444444444   5555555555566667788999999999999999999999999


Q ss_pred             CeEEEEeccCc----eeeeeEeec------CCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceE
Q 023822          143 RTVLLWDQRAE----KCQGLLRVQ------GRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANV  211 (276)
Q Consensus       143 ~~i~iwd~~~~----~~~~~~~~~------~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~  211 (276)
                      .++++||++..    +++..+..+      ..-.++|+|++..+.+++ |+.+++||......    ++.+++|...|++
T Consensus       238 ~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~----lyklpGh~gsvn~  313 (338)
T KOG0265|consen  238 NTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRI----LYKLPGHYGSVNE  313 (338)
T ss_pred             ceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccE----EEEcCCcceeEEE
Confidence            99999999853    345555222      123689999999998888 99999999987655    8889999999999


Q ss_pred             EEECCCCcEEEEeecCCcEEEEE
Q 023822          212 VKFSNDGRLMLLTTMEGHIHVLD  234 (276)
Q Consensus       212 ~~~~~~~~~l~~~~~dg~i~i~d  234 (276)
                      ++|+|...+|.+++.|.+|++=+
T Consensus       314 ~~Fhp~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  314 VDFHPTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             eeecCCCcEEEEeccCceeEeec
Confidence            99999999999999999988743

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=6.8e-30  Score=186.74  Aligned_cols=207  Identities=21%  Similarity=0.290  Sum_probs=162.3

Q ss_pred             ceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCee--eeee--eeeeeceEEEEEeccCCeEEEeccCCCCCc
Q 023822           27 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATC--LKTI--NSKKYGVDLVCFTSHPTTVIYSSKNGWDES  102 (276)
Q Consensus        27 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~--~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~  102 (276)
                      ...|++|.+.|++++|+.||++||+++.|++|++|++.....  .+.+  ...-+..+.+.|.||-+.+++....  ...
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~--g~~  156 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKR--GNK  156 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEcc--CCE
Confidence            345789999999999999999999999999999999975321  1111  1112356789999999888877763  678


Q ss_pred             eEEEEccCCc---eee---------eecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe--ecCCCeeE
Q 023822          103 LRLLSLHDNK---YLR---------YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR--VQGRPAAA  168 (276)
Q Consensus       103 i~~~d~~~~~---~~~---------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~  168 (276)
                      +++|.+...+   ...         .-+.|.-.+..+-....+.++++++.|..|.+|+++ ++.+..+.  .......+
T Consensus       157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aa  235 (420)
T KOG2096|consen  157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAA  235 (420)
T ss_pred             EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccccccee
Confidence            9999865322   111         113456677777777888999999999999999999 77777773  33456789


Q ss_pred             ecCCCcEEEEee-CCeEEEEecccCCCC----CeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECC
Q 023822          169 YDDQGLVFAVAF-GGYIRMFDARKYEKG----PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF  236 (276)
Q Consensus       169 ~~~~~~~l~~~~-d~~i~~~d~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  236 (276)
                      .+|+|++++++. ...+++|.+--.+..    ....+.+.+|...|..++|+|+...+++.+.||++++||+.
T Consensus       236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence            999999998887 888999997554432    23467889999999999999999999999999999999963

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.97  E-value=1.8e-29  Score=187.19  Aligned_cols=204  Identities=12%  Similarity=0.228  Sum_probs=173.5

Q ss_pred             cceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEE
Q 023822           26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL  105 (276)
Q Consensus        26 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~  105 (276)
                      ....+.+|+..|+|+.|+.+|.+||||..+|.|+||...++.....+...-..+.-+.|+|.+..|+.|+.   ||.+..
T Consensus        98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~---DGsvWm  174 (399)
T KOG0296|consen   98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST---DGSVWM  174 (399)
T ss_pred             ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecC---CCcEEE
Confidence            45678899999999999999999999999999999999999988888766677899999999999999998   999999


Q ss_pred             EEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe-------------------------
Q 023822          106 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR-------------------------  160 (276)
Q Consensus       106 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------------------------  160 (276)
                      |.+.++...+.+.+|+.++++=.|.|+|+.++++..||+|++||+.+++++..+.                         
T Consensus       175 w~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e  254 (399)
T KOG0296|consen  175 WQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSE  254 (399)
T ss_pred             EECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCC
Confidence            9999988889999999999999999999999999999999999998876544431                         


Q ss_pred             ------------------------------------------------------------------------ecCCCeeE
Q 023822          161 ------------------------------------------------------------------------VQGRPAAA  168 (276)
Q Consensus       161 ------------------------------------------------------------------------~~~~~~~~  168 (276)
                                                                                              ..++..+.
T Consensus       255 ~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~  334 (399)
T KOG0296|consen  255 GVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLK  334 (399)
T ss_pred             ccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEE
Confidence                                                                                    01111223


Q ss_pred             ecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECC
Q 023822          169 YDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF  236 (276)
Q Consensus       169 ~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  236 (276)
                      |.++..+++++.+|.|+.||.|+++.    .+...+|...|.+++++|++++++++|.|+..+||+..
T Consensus       335 w~~t~~l~t~c~~g~v~~wDaRtG~l----~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  335 WLNTDYLLTACANGKVRQWDARTGQL----KFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EcCcchheeeccCceEEeeeccccce----EEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            33433444555577888888877765    77888999999999999999999999999999999864

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=1.3e-29  Score=184.24  Aligned_cols=228  Identities=22%  Similarity=0.288  Sum_probs=179.6

Q ss_pred             CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCce
Q 023822           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY  113 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~  113 (276)
                      ...|.++.|+|.++.|++++.||++++||.........+ .|..++.+++|.+ ...+++++.   ||.|+.+|+++++.
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~---dg~vr~~Dln~~~~   87 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGL---DGQVRRYDLNTGNE   87 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEecc---CceEEEEEecCCcc
Confidence            567999999999999999999999999999877554444 4678999999986 567778877   99999999998875


Q ss_pred             eeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEE-eeCCeEEEEecccC
Q 023822          114 LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV-AFGGYIRMFDARKY  192 (276)
Q Consensus       114 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~d~~i~~~d~~~~  192 (276)
                      . .+..|..+|.++.+++....+++|+.|++|++||.+.......+.... ..-+.+-.+..|++ +.+..+.+||+++.
T Consensus        88 ~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v~g~~LvVg~~~r~v~iyDLRn~  165 (323)
T KOG1036|consen   88 D-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDVSGNRLVVGTSDRKVLIYDLRNL  165 (323)
T ss_pred             e-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCc-eEEEEeccCCEEEEeecCceEEEEEcccc
Confidence            4 455699999999999988899999999999999999755555553222 23334444444444 55888999998875


Q ss_pred             CCCC--------------------------------------------eeeeeecCC---------CCCceEEEECCCCc
Q 023822          193 EKGP--------------------------------------------FDIFSVGGD---------ISDANVVKFSNDGR  219 (276)
Q Consensus       193 ~~~~--------------------------------------------~~~~~~~~~---------~~~i~~~~~~~~~~  219 (276)
                      ....                                            ...+.+..|         ..+|++++|+|-..
T Consensus       166 ~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~  245 (323)
T KOG1036|consen  166 DEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG  245 (323)
T ss_pred             cchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc
Confidence            4211                                            001111112         13789999999988


Q ss_pred             EEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecC
Q 023822          220 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRV  271 (276)
Q Consensus       220 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  271 (276)
                      .|++|+.||.|.+||+.+.+.+..+.   ..+..|.+++|+.||..||.++.
T Consensus       246 tfaTgGsDG~V~~Wd~~~rKrl~q~~---~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  246 TFATGGSDGIVNIWDLFNRKRLKQLA---KYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             eEEecCCCceEEEccCcchhhhhhcc---CCCCceEEEEeccCCCeEEEEec
Confidence            99999999999999999999999888   56788999999999999999874

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=1.5e-29  Score=180.66  Aligned_cols=211  Identities=18%  Similarity=0.199  Sum_probs=179.1

Q ss_pred             ccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccC--CCCCc
Q 023822           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN--GWDES  102 (276)
Q Consensus        25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~--~~d~~  102 (276)
                      +.+-++.||++.|+|++.+.+.+.|++|+.|.++++||+++|+++..++.. .+|..+.|++++++++.....  +..+.
T Consensus        43 erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~-~~Vk~~~F~~~gn~~l~~tD~~mg~~~~  121 (327)
T KOG0643|consen   43 ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTN-SPVKRVDFSFGGNLILASTDKQMGYTCF  121 (327)
T ss_pred             ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecC-CeeEEEeeccCCcEEEEEehhhcCcceE
Confidence            445778999999999999999999999999999999999999999998764 489999999999998887653  34678


Q ss_pred             eEEEEcc-------CCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE---eecCCCeeEecCC
Q 023822          103 LRLLSLH-------DNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL---RVQGRPAAAYDDQ  172 (276)
Q Consensus       103 i~~~d~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~  172 (276)
                      |.++|++       ..++...+..+.+.++.+-|.|-++.|++|..||.|..||+++++....-   |...++.+.++++
T Consensus       122 v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d  201 (327)
T KOG0643|consen  122 VSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRD  201 (327)
T ss_pred             EEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCC
Confidence            9999998       44567778888899999999999999999999999999999997554333   7778999999999


Q ss_pred             CcEEEEee-CCeEEEEecccCCCCC---------------------------------------------------eeee
Q 023822          173 GLVFAVAF-GGYIRMFDARKYEKGP---------------------------------------------------FDIF  200 (276)
Q Consensus       173 ~~~l~~~~-d~~i~~~d~~~~~~~~---------------------------------------------------~~~~  200 (276)
                      ..++++++ |.+-++||.++.+...                                                   ..+-
T Consensus       202 ~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEig  281 (327)
T KOG0643|consen  202 RTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIG  281 (327)
T ss_pred             cceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhc
Confidence            99998888 9999999988743110                                                   0012


Q ss_pred             eecCCCCCceEEEECCCCcEEEEeecCCcEEEEECC
Q 023822          201 SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF  236 (276)
Q Consensus       201 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  236 (276)
                      ...+|-++|++++|+|+|+..++|++||.|++....
T Consensus       282 rvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  282 RVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             cccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence            344588999999999999999999999999998654

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=7.6e-30  Score=194.70  Aligned_cols=224  Identities=19%  Similarity=0.248  Sum_probs=195.2

Q ss_pred             CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEcc----
Q 023822           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH----  109 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~----  109 (276)
                      .++|.|++-+|+|.+|+.|+..|.+++|.+.+|..+..+..|-..|+++.|+.|+.++++++.   ||.|.+|.+.    
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgsk---Dg~V~vW~l~~lv~  157 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSK---DGAVLVWLLTDLVS  157 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCC---CccEEEEEEEeecc
Confidence            578999999999999999989999999999999999999999999999999999999999999   9999999864    


Q ss_pred             -----CCceeeeecccCcceEEEEeccCC--CEEEEeeCCCeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee-
Q 023822          110 -----DNKYLRYFKGHHDRVVSLSLCSSK--DCFISGSLDRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF-  180 (276)
Q Consensus       110 -----~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-  180 (276)
                           +-++...+..|.-+|+++...+.+  .++++++.|.++++||+..+..+..+ ....+.+++++|.++.+.+|. 
T Consensus       158 a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~  237 (476)
T KOG0646|consen  158 ADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTE  237 (476)
T ss_pred             cccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCC
Confidence                 236778899999999999987653  48999999999999999999988887 556688999999998888887 


Q ss_pred             CCeEEEEecccCC------------CCCeeeeeecCCCC--CceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeec
Q 023822          181 GGYIRMFDARKYE------------KGPFDIFSVGGDIS--DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV  246 (276)
Q Consensus       181 d~~i~~~d~~~~~------------~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  246 (276)
                      +|.|.+.++....            ........+.+|..  +|+|++++-||.+|++|+.||.|+|||+.+.++++++. 
T Consensus       238 ~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~-  316 (476)
T KOG0646|consen  238 EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ-  316 (476)
T ss_pred             cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh-
Confidence            8999998876543            11223445566776  99999999999999999999999999999999999887 


Q ss_pred             CCCCCCceEEEEECCCC
Q 023822          247 KPVSRNSTLEASFSPEG  263 (276)
Q Consensus       247 ~~~~~~~v~~~~~s~~g  263 (276)
                        ...++|+.+.+.|-.
T Consensus       317 --~~kgpVtnL~i~~~~  331 (476)
T KOG0646|consen  317 --TSKGPVTNLQINPLE  331 (476)
T ss_pred             --hhccccceeEeeccc
Confidence              467899999986643

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=1.2e-29  Score=203.92  Aligned_cols=239  Identities=14%  Similarity=0.167  Sum_probs=211.0

Q ss_pred             cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i  103 (276)
                      ++.++++..  +-+.+..|-|.++++++|...|.+.+||+.+...+.+++.|.+.++.++.+|+++.+++++.   |.+|
T Consensus       404 ~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~sa---DktV  478 (888)
T KOG0306|consen  404 LKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSA---DKTV  478 (888)
T ss_pred             cceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecC---CcEE
Confidence            455555543  47889999999999999999999999999999999999999999999999999999999999   9999


Q ss_pred             EEEEccC-----Cce--e------eeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeE
Q 023822          104 RLLSLHD-----NKY--L------RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAA  168 (276)
Q Consensus       104 ~~~d~~~-----~~~--~------~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~  168 (276)
                      ++||..-     +..  +      +++ .-.+.|.|+.++||+++|+++--|.++++|-+++.+....+  |.-++.++.
T Consensus       479 kfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smD  557 (888)
T KOG0306|consen  479 KFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMD  557 (888)
T ss_pred             EEEeEEEEeccCcccceeeeeccceEE-eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEe
Confidence            9999642     111  1      112 24568999999999999999999999999999998887777  556778999


Q ss_pred             ecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecC
Q 023822          169 YDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK  247 (276)
Q Consensus       169 ~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  247 (276)
                      ++|+++++++|+ |.+|++|-+.-+.+    -..+.+|...|.++.|-|....+++++.|+.|+-||....+.++.+.  
T Consensus       558 IS~DSklivTgSADKnVKiWGLdFGDC----HKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~--  631 (888)
T KOG0306|consen  558 ISPDSKLIVTGSADKNVKIWGLDFGDC----HKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD--  631 (888)
T ss_pred             ccCCcCeEEeccCCCceEEeccccchh----hhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeec--
Confidence            999999999998 99999999998887    55667899999999999999999999999999999999999999998  


Q ss_pred             CCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          248 PVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       248 ~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                       +|...|++++.+|+|.+++++|.|..+
T Consensus       632 -~H~~ev~cLav~~~G~~vvs~shD~sI  658 (888)
T KOG0306|consen  632 -GHHSEVWCLAVSPNGSFVVSSSHDKSI  658 (888)
T ss_pred             -cchheeeeeEEcCCCCeEEeccCCcee
Confidence             899999999999999999999998653

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=8.4e-30  Score=196.96  Aligned_cols=264  Identities=15%  Similarity=0.241  Sum_probs=198.8

Q ss_pred             cccCcccceeeeeehHHHhhccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeee-----------
Q 023822            3 GSQSEREDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKT-----------   71 (276)
Q Consensus         3 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-----------   71 (276)
                      |+++.....+.+.--+..++.++.+.--.  ...|++++|++.|..|++.+.....+|+|-...+....           
T Consensus       185 Gs~Dy~v~~wDf~gMdas~~~fr~l~P~E--~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~  262 (641)
T KOG0772|consen  185 GSLDYTVKFWDFQGMDASMRSFRQLQPCE--THQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMY  262 (641)
T ss_pred             ccccceEEEEecccccccchhhhccCccc--ccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhh
Confidence            55555555554444444444444333333  34789999999999998888888999999654333222           


Q ss_pred             -eeeeeeceEEEEEeccCC-eEEEeccCCCCCceEEEEccCCce-eeeec-----ccCcceEEEEeccCCCEEEEeeCCC
Q 023822           72 -INSKKYGVDLVCFTSHPT-TVIYSSKNGWDESLRLLSLHDNKY-LRYFK-----GHHDRVVSLSLCSSKDCFISGSLDR  143 (276)
Q Consensus        72 -~~~~~~~v~~~~~~~~~~-~l~~~~~~~~d~~i~~~d~~~~~~-~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~d~  143 (276)
                       .++|...+++-+|+|..+ .+++++.   ||++++||++..+. .+.++     +..-+++.++|++++++||+|+.||
T Consensus       263 nTKGHia~lt~g~whP~~k~~FlT~s~---DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DG  339 (641)
T KOG0772|consen  263 NTKGHIAELTCGCWHPDNKEEFLTCSY---DGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDG  339 (641)
T ss_pred             ccCCceeeeeccccccCcccceEEecC---CCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCC
Confidence             257888999999999765 5677777   99999999976643 33332     2334689999999999999999999


Q ss_pred             eEEEEeccCceeeeeE-----eec--CCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEEC
Q 023822          144 TVLLWDQRAEKCQGLL-----RVQ--GRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFS  215 (276)
Q Consensus       144 ~i~iwd~~~~~~~~~~-----~~~--~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~  215 (276)
                      +|.+|+.++......+     |..  .+.++.|+++|++|++-+ |+++++||+++.+.. +....--....+-+.++||
T Consensus       340 SIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp-L~~~tgL~t~~~~tdc~FS  418 (641)
T KOG0772|consen  340 SIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP-LNVRTGLPTPFPGTDCCFS  418 (641)
T ss_pred             ceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc-hhhhcCCCccCCCCccccC
Confidence            9999998655332222     444  688999999999888877 999999999998753 2222222234567789999


Q ss_pred             CCCcEEEEeec------CCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          216 NDGRLMLLTTM------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       216 ~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      |+.++|++|..      .|.+.+||..+...++.+.   -....|..+.|+|.-+.|.+|+.||+.
T Consensus       419 Pd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~---i~~aSvv~~~WhpkLNQi~~gsgdG~~  481 (641)
T KOG0772|consen  419 PDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKID---ISTASVVRCLWHPKLNQIFAGSGDGTA  481 (641)
T ss_pred             CCceEEEecccccCCCCCceEEEEeccceeeEEEec---CCCceEEEEeecchhhheeeecCCCce
Confidence            99999999863      4689999999999999887   467889999999999999999999974

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=3.1e-30  Score=182.60  Aligned_cols=201  Identities=19%  Similarity=0.294  Sum_probs=176.3

Q ss_pred             cCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCe-eeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccC
Q 023822           32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT-CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD  110 (276)
Q Consensus        32 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~  110 (276)
                      .|..-|.+++|+.|.++|++|+.+..+||||++..+ +..++.+|.+.|..+.|....+.+++++.   |+.|++||.++
T Consensus        98 ~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSad---d~tVRLWD~rT  174 (334)
T KOG0278|consen   98 EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSAD---DKTVRLWDHRT  174 (334)
T ss_pred             hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeecc---CCceEEEEecc
Confidence            478889999999999999999999999999998654 56778899999999999999999999877   99999999999


Q ss_pred             CceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe-ecCCCeeEecCCCcEEEEee-CCeEEEEe
Q 023822          111 NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR-VQGRPAAAYDDQGLVFAVAF-GGYIRMFD  188 (276)
Q Consensus       111 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~-d~~i~~~d  188 (276)
                      ++.++++. .+.+|+++.++++|++|.++ ..+.|.+||..+...++.+. ...+.+..++|+..+++++. |..++.||
T Consensus       175 gt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfD  252 (334)
T KOG0278|consen  175 GTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFD  252 (334)
T ss_pred             CcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEe
Confidence            99999987 67789999999999866655 46789999999998888874 44577899999988887777 89999999


Q ss_pred             cccCCCCCeeeee-ecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEE
Q 023822          189 ARKYEKGPFDIFS-VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL  241 (276)
Q Consensus       189 ~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  241 (276)
                      ..+++.    +-. ..+|.++|.|+.|+|+|...++||+||+|++|.+..++..
T Consensus       253 y~TgeE----i~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  253 YNTGEE----IGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             ccCCce----eeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence            999875    333 4789999999999999999999999999999998766554

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=2e-29  Score=192.07  Aligned_cols=240  Identities=16%  Similarity=0.163  Sum_probs=203.6

Q ss_pred             ceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeee----e-------------e-eeeeeceEEEEEeccC
Q 023822           27 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLK----T-------------I-NSKKYGVDLVCFTSHP   88 (276)
Q Consensus        27 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~----~-------------~-~~~~~~v~~~~~~~~~   88 (276)
                      ...+..|.-+|.|++++|++++.++++.|++|.-|++.+++...    .             - +.|...+.+++.++++
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            45677899999999999999999999999999999998776331    0             0 2566789999999999


Q ss_pred             CeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCe
Q 023822           89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPA  166 (276)
Q Consensus        89 ~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~  166 (276)
                      ++|++++.   |..|.||+.++.+.++.+.+|.+.|.+++|-.....+++++.|++|++|++.....+.++  |...+..
T Consensus       215 kylatgg~---d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~  291 (479)
T KOG0299|consen  215 KYLATGGR---DRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLG  291 (479)
T ss_pred             cEEEecCC---CceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceee
Confidence            99999998   999999999999999999999999999999988889999999999999999998888877  5556667


Q ss_pred             eEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEee
Q 023822          167 AAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  245 (276)
Q Consensus       167 ~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  245 (276)
                      +....-++.++++. |+++++|++....     ...+.++...+-|++|-.+. .+++|+.+|.|.+|++...+++....
T Consensus       292 IdaL~reR~vtVGgrDrT~rlwKi~ees-----qlifrg~~~sidcv~~In~~-HfvsGSdnG~IaLWs~~KKkplf~~~  365 (479)
T KOG0299|consen  292 IDALSRERCVTVGGRDRTVRLWKIPEES-----QLIFRGGEGSIDCVAFINDE-HFVSGSDNGSIALWSLLKKKPLFTSR  365 (479)
T ss_pred             echhcccceEEeccccceeEEEeccccc-----eeeeeCCCCCeeeEEEeccc-ceeeccCCceEEEeeecccCceeEee
Confidence            77777888888886 9999999994322     33344667789999998764 58999999999999999999988776


Q ss_pred             cCCC---------CCCceEEEEECCCCcEEEEecCCCCC
Q 023822          246 VKPV---------SRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       246 ~~~~---------~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      ...+         +...|++++..|...++|+|+.+|.|
T Consensus       366 ~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~v  404 (479)
T KOG0299|consen  366 LAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCV  404 (479)
T ss_pred             ccccccCCccccccccceeeeEecccCceEEecCCCCce
Confidence            4221         11279999999999999999999976

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=9.6e-31  Score=196.82  Aligned_cols=239  Identities=22%  Similarity=0.320  Sum_probs=202.6

Q ss_pred             ceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCe--eeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceE
Q 023822           27 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (276)
Q Consensus        27 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~  104 (276)
                      ...+..|.+.|..+.|-++...|++|+.|..|++|+....+  .+.++.+..++++.+.|.++++++++++.   |+.++
T Consensus       168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~---d~~~r  244 (459)
T KOG0288|consen  168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASN---DKNLR  244 (459)
T ss_pred             hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecC---CCcee
Confidence            34567899999999999998999999999999999987666  66777788889999999999999999998   99999


Q ss_pred             EEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee-CC
Q 023822          105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF-GG  182 (276)
Q Consensus       105 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-d~  182 (276)
                      +|++...+...++.+|.+.|+++.|......+++|+.|.+|++||+....+.+++ .......+..+  ...++++. |+
T Consensus       245 ~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~Dk  322 (459)
T KOG0288|consen  245 LWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDK  322 (459)
T ss_pred             eeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeeccccc
Confidence            9999999999999999999999999877777999999999999999999888877 44444445554  33444444 99


Q ss_pred             eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCC-CCCCceEEEEECC
Q 023822          183 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP-VSRNSTLEASFSP  261 (276)
Q Consensus       183 ~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~v~~~~~s~  261 (276)
                      .|++||.+....    ....+.+. .|+++..+++|..|.+++.|..+.+.|+++.+....+.... ......+.+.|||
T Consensus       323 kvRfwD~Rs~~~----~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp  397 (459)
T KOG0288|consen  323 KVRFWDIRSADK----TRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP  397 (459)
T ss_pred             ceEEEeccCCce----eeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECC
Confidence            999999998665    45554443 89999999999999999999999999999998888775211 1234588999999


Q ss_pred             CCcEEEEecCCCCC
Q 023822          262 EGMFVISGRVSPFS  275 (276)
Q Consensus       262 ~g~~l~~~~~dg~v  275 (276)
                      ++.|+++||.||-|
T Consensus       398 d~~YvaAGS~dgsv  411 (459)
T KOG0288|consen  398 DGSYVAAGSADGSV  411 (459)
T ss_pred             CCceeeeccCCCcE
Confidence            99999999999975

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=4.7e-28  Score=176.78  Aligned_cols=237  Identities=16%  Similarity=0.162  Sum_probs=193.6

Q ss_pred             cccceeeccCCCcEEEEEEcCCCCEEEEeec--CCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCC
Q 023822           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASD--DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE  101 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~  101 (276)
                      .+..+++..+.-.|..++|....+.++.++.  |.+|+.-++.+.+.++.+.+|...|..++.+|-+..+++++.   |+
T Consensus        46 g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~---D~  122 (311)
T KOG1446|consen   46 GKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSL---DK  122 (311)
T ss_pred             CceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEeccc---CC
Confidence            3455666667778899999877777777765  889999999999999999999999999999999999999998   99


Q ss_pred             ceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCc--eeeeeE--e---ecCCCeeEecCCCc
Q 023822          102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE--KCQGLL--R---VQGRPAAAYDDQGL  174 (276)
Q Consensus       102 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~--~---~~~~~~~~~~~~~~  174 (276)
                      +|++||++..++...+.....  ..++|.|+|-++|++.....|++||+|..  .+...+  .   ......+.|+|+|+
T Consensus       123 tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK  200 (311)
T KOG1446|consen  123 TVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGK  200 (311)
T ss_pred             eEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCC
Confidence            999999998887766653333  35789999999999998889999999965  233333  2   33456899999999


Q ss_pred             EEEEee-CCeEEEEecccCCCCCeeeeeecCCCC---CceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCC
Q 023822          175 VFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDIS---DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS  250 (276)
Q Consensus       175 ~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  250 (276)
                      .+..++ .+.+++.|.-.+..    ...+..+..   -....+|+||++++++|+.||+|.+|++++++.+..+...  +
T Consensus       201 ~iLlsT~~s~~~~lDAf~G~~----~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~--~  274 (311)
T KOG1446|consen  201 SILLSTNASFIYLLDAFDGTV----KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP--N  274 (311)
T ss_pred             EEEEEeCCCcEEEEEccCCcE----eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC--C
Confidence            988888 68899999877663    222222222   2257889999999999999999999999999999999832  6


Q ss_pred             CCceEEEEECCCCcEEEEecC
Q 023822          251 RNSTLEASFSPEGMFVISGRV  271 (276)
Q Consensus       251 ~~~v~~~~~s~~g~~l~~~~~  271 (276)
                      .+++.++.|+|.-.++++++.
T Consensus       275 ~~~~~~~~fnP~~~mf~sa~s  295 (311)
T KOG1446|consen  275 GGPVSCVRFNPRYAMFVSASS  295 (311)
T ss_pred             CCCccccccCCceeeeeecCc
Confidence            789999999999888888875

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=2.4e-29  Score=187.47  Aligned_cols=230  Identities=20%  Similarity=0.293  Sum_probs=188.5

Q ss_pred             cCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCe---EEEeccCCCCCceEEEEc
Q 023822           32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTT---VIYSSKNGWDESLRLLSL  108 (276)
Q Consensus        32 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~---l~~~~~~~~d~~i~~~d~  108 (276)
                      -|.+.|.++...  +..+++|+.||.+++||. .|+....+.+|.+++..++|.-.+..   +++++.   |.++++|.+
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~---Dqtl~Lw~~  176 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASM---DQTLRLWKW  176 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecC---CceEEEEEe
Confidence            377888888777  679999999999999996 68999999999999998888765544   899988   999999999


Q ss_pred             cCCcee----eeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCc-------------------------eeeeeE
Q 023822          109 HDNKYL----RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE-------------------------KCQGLL  159 (276)
Q Consensus       109 ~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-------------------------~~~~~~  159 (276)
                      +.++..    ..-.+|...|.++...+++..+++|+.|.+|.+|+..+.                         .++..+
T Consensus       177 ~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl  256 (423)
T KOG0313|consen  177 NVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL  256 (423)
T ss_pred             cCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEe
Confidence            877532    333599999999999999999999999999999993210                         112222


Q ss_pred             --eecCCCeeEecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCC
Q 023822          160 --RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR  237 (276)
Q Consensus       160 --~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  237 (276)
                        |..++..+.|++.+..+.++.|.+|+.||+.++..    ...+ .....++++..+|..++|++|+.|..+++||.++
T Consensus       257 ~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~----~~~~-~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~  331 (423)
T KOG0313|consen  257 EGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGL----KSTL-TTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRT  331 (423)
T ss_pred             cccccceeeEEEcCCCceEeecccceEEEEEeecccc----eeee-ecCcceeEeecccccceeeecCCCCceeecCCCC
Confidence              55667789999977777788899999999998775    2222 2345799999999999999999999999999887


Q ss_pred             CcE---EEEeecCCCCCCceEEEEECCCC-cEEEEecCCCCC
Q 023822          238 GTL---LSTYNVKPVSRNSTLEASFSPEG-MFVISGRVSPFS  275 (276)
Q Consensus       238 ~~~---~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v  275 (276)
                      +.-   .+++.   +|.+.|.++.|+|.. ..|++|+.|+++
T Consensus       332 ~~gs~v~~s~~---gH~nwVssvkwsp~~~~~~~S~S~D~t~  370 (423)
T KOG0313|consen  332 GDGSVVSQSLI---GHKNWVSSVKWSPTNEFQLVSGSYDNTV  370 (423)
T ss_pred             CCCceeEEeee---cchhhhhheecCCCCceEEEEEecCCeE
Confidence            643   34455   799999999999976 568999999985

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=5.5e-31  Score=210.71  Aligned_cols=236  Identities=17%  Similarity=0.285  Sum_probs=214.0

Q ss_pred             eeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEE
Q 023822           28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS  107 (276)
Q Consensus        28 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d  107 (276)
                      +.+-.|...|.|+..-..++.+++|+.|..+-+|.+.....+..+.+|..+|.++.|++....++.+..   +|.|++||
T Consensus        22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~Llaagsa---sgtiK~wD   98 (825)
T KOG0267|consen   22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSA---SGTIKVWD   98 (825)
T ss_pred             hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhccccc---CCceeeee
Confidence            345578899999998778899999999999999999888888889999999999999999999999988   99999999


Q ss_pred             ccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-CCeE
Q 023822          108 LHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-GGYI  184 (276)
Q Consensus       108 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d~~i  184 (276)
                      ++..+.++++.+|...+.++.|+|-+.++++++.|..+++||++...+.+.+  +...+.++.|+|+|++++.+. |..+
T Consensus        99 leeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tv  178 (825)
T KOG0267|consen   99 LEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTV  178 (825)
T ss_pred             hhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCccee
Confidence            9999999999999999999999999999999999999999999988888888  445577899999999999998 6999


Q ss_pred             EEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCc
Q 023822          185 RMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM  264 (276)
Q Consensus       185 ~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  264 (276)
                      ++||...++.    ...+..|...+..+.|+|..-+++.|+.|+++++||+++.+.+....   .....|.+++|+|+++
T Consensus       179 ki~d~~agk~----~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~---~~~~~v~~~~fn~~~~  251 (825)
T KOG0267|consen  179 KIWDLTAGKL----SKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGK---PETDGVRSLAFNPDGK  251 (825)
T ss_pred             eeeccccccc----ccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccC---CccCCceeeeecCCce
Confidence            9999988775    66677899999999999999999999999999999999988888877   4678899999999999


Q ss_pred             EEEEecCCC
Q 023822          265 FVISGRVSP  273 (276)
Q Consensus       265 ~l~~~~~dg  273 (276)
                      .+++|....
T Consensus       252 ~~~~G~q~s  260 (825)
T KOG0267|consen  252 IVLSGEQIS  260 (825)
T ss_pred             eeecCchhh
Confidence            999887654

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=4.4e-29  Score=189.90  Aligned_cols=237  Identities=15%  Similarity=0.226  Sum_probs=187.8

Q ss_pred             cCCCcEEEEEEcCC-CCEEEEeecCCeEEEEEccCC----------eeeeeeeeeeeceEEEEEeccCC-eEEEeccCCC
Q 023822           32 DYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTAA----------TCLKTINSKKYGVDLVCFTSHPT-TVIYSSKNGW   99 (276)
Q Consensus        32 ~h~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~   99 (276)
                      .|.+.|+.+++.|+ ...+|+.+..+.+.|||..+-          .+-..+.+|...-.+++|++... ++++++.   
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~---  198 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSD---  198 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccC---
Confidence            58999999999995 456778888999999998642          12236788888788899998654 5666666   


Q ss_pred             CCceEEEEccCCc-------eeeeecccCcceEEEEeccC-CCEEEEeeCCCeEEEEeccC--ceeeeeE--eecCCCee
Q 023822          100 DESLRLLSLHDNK-------YLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRA--EKCQGLL--RVQGRPAA  167 (276)
Q Consensus       100 d~~i~~~d~~~~~-------~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~--~~~~~~~--~~~~~~~~  167 (276)
                      |+.|.+||+....       +...+.+|...|..++|++. ..+|++++.|+.+.|||+|+  .++.+..  +...+.++
T Consensus       199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~  278 (422)
T KOG0264|consen  199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCV  278 (422)
T ss_pred             CCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEE
Confidence            9999999987542       34567899999999999995 45899999999999999995  3444443  66778999


Q ss_pred             EecCCC-cEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCC-cEEEEeecCCcEEEEECCCCcEEE--
Q 023822          168 AYDDQG-LVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLS--  242 (276)
Q Consensus       168 ~~~~~~-~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~--  242 (276)
                      +|+|-+ .+||+++ |++|.+||+|+...   ..+.+.+|...|.++.|+|.. ..||+++.|+.+.+||+..-...+  
T Consensus       279 ~fnp~~~~ilAT~S~D~tV~LwDlRnL~~---~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~  355 (422)
T KOG0264|consen  279 AFNPFNEFILATGSADKTVALWDLRNLNK---PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSP  355 (422)
T ss_pred             EeCCCCCceEEeccCCCcEEEeechhccc---CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccCh
Confidence            999965 6667776 99999999999765   477888999999999999964 778999999999999986432221  


Q ss_pred             ---------EeecCCCCCCceEEEEECCCCcE-EEEecCCCC
Q 023822          243 ---------TYNVKPVSRNSTLEASFSPEGMF-VISGRVSPF  274 (276)
Q Consensus       243 ---------~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~dg~  274 (276)
                               .+-.|.||...|..+.|+|+..+ +++.++|+.
T Consensus       356 eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~  397 (422)
T KOG0264|consen  356 EDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNI  397 (422)
T ss_pred             hhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCce
Confidence                     22334589999999999999876 566676654

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.3e-29  Score=177.46  Aligned_cols=241  Identities=11%  Similarity=0.056  Sum_probs=189.9

Q ss_pred             eccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCC---eeeeeeeeeeeceEEEEEec--cCCeEEEeccCCCCCceE
Q 023822           30 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA---TCLKTINSKKYGVDLVCFTS--HPTTVIYSSKNGWDESLR  104 (276)
Q Consensus        30 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~~d~~i~  104 (276)
                      -..|.+.|..+...--|+.|||++.|++|+|+...+.   +++.++.+|.++|..++|..  .|..|++++.   ||.|.
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsY---DgkVI   83 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSY---DGKVI   83 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeec---CceEE
Confidence            3468888888888878999999999999999998754   56888999999999999986  7899999998   99999


Q ss_pred             EEEccCCce--eeeecccCcceEEEEeccC--CCEEEEeeCCCeEEEEeccCc-e----eeeeEeecCCCeeEecCC---
Q 023822          105 LLSLHDNKY--LRYFKGHHDRVVSLSLCSS--KDCFISGSLDRTVLLWDQRAE-K----CQGLLRVQGRPAAAYDDQ---  172 (276)
Q Consensus       105 ~~d~~~~~~--~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~-~----~~~~~~~~~~~~~~~~~~---  172 (276)
                      ||.-.+++-  ......|...|++++|.|.  |-.|++++.||.|.+.+.+.. .    .+..-|..++++++|.|.   
T Consensus        84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~  163 (299)
T KOG1332|consen   84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP  163 (299)
T ss_pred             EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence            999887743  3355679999999999986  458999999999999998865 1    122227778889999875   


Q ss_pred             C------------cEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCC----cEEEEeecCCcEEEEECC
Q 023822          173 G------------LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG----RLMLLTTMEGHIHVLDSF  236 (276)
Q Consensus       173 ~------------~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~i~d~~  236 (276)
                      |            +++.+|.|..|++|+.....  -.....+.+|...|..++|.|.-    .+||+++.||++.||...
T Consensus       164 g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~--w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~  241 (299)
T KOG1332|consen  164 GSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS--WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD  241 (299)
T ss_pred             ccccccCcccccceeeccCCccceeeeecCCcc--hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec
Confidence            3            34455559999999998752  12233478899999999999963    579999999999999865


Q ss_pred             CCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          237 RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       237 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      .................+..+.||+.|..|++++.|..|
T Consensus       242 ~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkv  280 (299)
T KOG1332|consen  242 EEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKV  280 (299)
T ss_pred             CccCcccccccccCCcceEEEEEeccccEEEEecCCcEE
Confidence            221111111111356789999999999999999888654

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4.6e-29  Score=191.41  Aligned_cols=230  Identities=17%  Similarity=0.215  Sum_probs=190.1

Q ss_pred             CCcEEEEEEcCCCC-EEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCc
Q 023822           34 NGRISSMDFHKSSS-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK  112 (276)
Q Consensus        34 ~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~  112 (276)
                      .+.|.+++|+|... -+|+.+. -.+.||+..+......+......+.++.|..||+.+++|..   .|.|++||+.+..
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~---sG~V~vfD~k~r~  101 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDE---SGHVKVFDMKSRV  101 (487)
T ss_pred             cCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCC---cCcEEEeccccHH
Confidence            36799999999443 3554443 46999999888887777777888999999999999999998   9999999987777


Q ss_pred             eeeeecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCc-EEEEee-CCeEEEE
Q 023822          113 YLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGL-VFAVAF-GGYIRMF  187 (276)
Q Consensus       113 ~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~-~l~~~~-d~~i~~~  187 (276)
                      .++.+.+|+.++..+.|+|+++ .|++|+.|+.+++||+.+......+  +...+++.+++|... ++++|+ ||.|++|
T Consensus       102 iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~  181 (487)
T KOG0310|consen  102 ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLW  181 (487)
T ss_pred             HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEE
Confidence            8889999999999999999765 7888999999999999998865455  667789999999764 555555 9999999


Q ss_pred             ecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcE-EEEeecCCCCCCceEEEEECCCCcEE
Q 023822          188 DARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL-LSTYNVKPVSRNSTLEASFSPEGMFV  266 (276)
Q Consensus       188 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l  266 (276)
                      |++.... +  +.. -.|..+|..+.+-|.|..+++++. ..|++||+.+|.. +....   .|...|+++++..++..|
T Consensus       182 DtR~~~~-~--v~e-lnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~---~H~KtVTcL~l~s~~~rL  253 (487)
T KOG0310|consen  182 DTRSLTS-R--VVE-LNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMF---NHNKTVTCLRLASDSTRL  253 (487)
T ss_pred             EeccCCc-e--eEE-ecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhh---cccceEEEEEeecCCceE
Confidence            9998642 1  333 357889999999999998888865 4799999986554 44444   488999999999999999


Q ss_pred             EEecCCCCC
Q 023822          267 ISGRVSPFS  275 (276)
Q Consensus       267 ~~~~~dg~v  275 (276)
                      ++|+-|+.|
T Consensus       254 lS~sLD~~V  262 (487)
T KOG0310|consen  254 LSGSLDRHV  262 (487)
T ss_pred             eecccccce
Confidence            999999976

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=7.6e-29  Score=206.57  Aligned_cols=239  Identities=16%  Similarity=0.201  Sum_probs=195.7

Q ss_pred             cCCCcEEEEEEcCCCCEEEEee--cCCeEEEEEccC------------CeeeeeeeeeeeceEEEEEeccCCeEEEeccC
Q 023822           32 DYNGRISSMDFHKSSSYLVTAS--DDESIRLYDVTA------------ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN   97 (276)
Q Consensus        32 ~h~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~   97 (276)
                      .+...|.+++.+|++..+|||+  .|+.++||+.+.            .+.+.....|.+.|.|+.|+|||++|++|+. 
T Consensus        11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD-   89 (942)
T KOG0973|consen   11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD-   89 (942)
T ss_pred             cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC-
Confidence            3456799999999999999999  899999998752            2455667789999999999999999999999 


Q ss_pred             CCCCceEEEEccC------------------CceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE
Q 023822           98 GWDESLRLLSLHD------------------NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL  159 (276)
Q Consensus        98 ~~d~~i~~~d~~~------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  159 (276)
                        |+.|.+|+...                  .+....+.+|...|..++|+|++.+|++++.|++|.+||.++.+.+..+
T Consensus        90 --D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl  167 (942)
T KOG0973|consen   90 --DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVL  167 (942)
T ss_pred             --cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeee
Confidence              99999999762                  1356678899999999999999999999999999999999999888888


Q ss_pred             --eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCee--eeeecCCCCCceEEEECCCCcEEEEeec----CCcE
Q 023822          160 --RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFD--IFSVGGDISDANVVKFSNDGRLMLLTTM----EGHI  230 (276)
Q Consensus       160 --~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i  230 (276)
                        |...+..+.|+|-|+++|+-+ |++|++|++.........  .+.......-+..+.|||||++|++...    -.++
T Consensus       168 ~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~  247 (942)
T KOG0973|consen  168 RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTI  247 (942)
T ss_pred             ecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCccee
Confidence              666788999999999999988 899999997654321111  1111112235678999999999998642    3468


Q ss_pred             EEEECCCCcEEEEeecCCCCCCceEEEEECCC-----Cc------------EEEEecCCCCCC
Q 023822          231 HVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-----GM------------FVISGRVSPFSS  276 (276)
Q Consensus       231 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----g~------------~l~~~~~dg~vs  276 (276)
                      .|.+-.+.+.-..+-   +|.+++..++|+|.     .+            .+|+|+.|+.+|
T Consensus       248 ~IieR~tWk~~~~Lv---GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlS  307 (942)
T KOG0973|consen  248 AIIERGTWKVDKDLV---GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLS  307 (942)
T ss_pred             EEEecCCceeeeeee---cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEE
Confidence            999987777777777   79999999999982     12            689999999875

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=5.1e-29  Score=187.84  Aligned_cols=206  Identities=14%  Similarity=0.225  Sum_probs=151.7

Q ss_pred             cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeee-eeeceEEEEEeccCCeEEEeccCCCCCc
Q 023822           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWDES  102 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~d~~  102 (276)
                      ++..+++.+|..+|..+.||||.++|++|+.|..+++||+.+|.....+.. +...+.+++|.||+..+++|+.   |+.
T Consensus       259 ~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~---dr~  335 (519)
T KOG0293|consen  259 FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSP---DRT  335 (519)
T ss_pred             eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCC---CCc
Confidence            788899999999999999999999999999999999999999998877754 3578999999999999999998   999


Q ss_pred             eEEEEccCCceeeeecccC-cceEEEEeccCCCEEEEeeCCCeEEE----------------------------------
Q 023822          103 LRLLSLHDNKYLRYFKGHH-DRVVSLSLCSSKDCFISGSLDRTVLL----------------------------------  147 (276)
Q Consensus       103 i~~~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d~~i~i----------------------------------  147 (276)
                      +..||++... ...+++-. ..|.+++..+||+++++.+.|..|++                                  
T Consensus       336 i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL  414 (519)
T KOG0293|consen  336 IIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNL  414 (519)
T ss_pred             EEEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEc
Confidence            9999986432 22222211 23455555555555554444544544                                  


Q ss_pred             -------EeccCceeeeeEeecC----CCeeEecC-CCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEE
Q 023822          148 -------WDQRAEKCQGLLRVQG----RPAAAYDD-QGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKF  214 (276)
Q Consensus       148 -------wd~~~~~~~~~~~~~~----~~~~~~~~-~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~  214 (276)
                             ||++..+.+..+.++.    +..-+|-. +..++++|+ |+.|++|+..+++.    +..+.+|...+++++|
T Consensus       415 ~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkl----l~~LsGHs~~vNcVsw  490 (519)
T KOG0293|consen  415 QDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKL----LAVLSGHSKTVNCVSW  490 (519)
T ss_pred             ccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCce----eEeecCCcceeeEEec
Confidence                   4444433333331111    11122222 336677777 89999999888775    7788999999999999


Q ss_pred             CCCC-cEEEEeecCCcEEEEECCC
Q 023822          215 SNDG-RLMLLTTMEGHIHVLDSFR  237 (276)
Q Consensus       215 ~~~~-~~l~~~~~dg~i~i~d~~~  237 (276)
                      +|.. ..+|+++.||+|+||-...
T Consensus       491 NP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  491 NPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             CCCCHHHhhccCCCCeEEEecCCc
Confidence            9965 6789999999999998653

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.5e-28  Score=199.97  Aligned_cols=204  Identities=18%  Similarity=0.290  Sum_probs=169.3

Q ss_pred             cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEec-cCCeEEEeccCCCCCc
Q 023822           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTS-HPTTVIYSSKNGWDES  102 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~d~~  102 (276)
                      -++...+.||.+.|..+.|+.+ ++|++++.|.+|++|++...+++..|. |..-|+|++|+| |.+++++|+-   |+.
T Consensus       359 ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSL---D~K  433 (712)
T KOG0283|consen  359 EKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSL---DGK  433 (712)
T ss_pred             ccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeeccc---ccc
Confidence            4667889999999999999986 589999999999999999999998885 778999999999 6789999998   999


Q ss_pred             eEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe----------ecCCCeeEecCC
Q 023822          103 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR----------VQGRPAAAYDDQ  172 (276)
Q Consensus       103 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----------~~~~~~~~~~~~  172 (276)
                      |+||++...+.+.-. .-..-|++++|.|+|+..+.|+.+|.+++|+....+.....+          ...|+.+.+.|.
T Consensus       434 vRiWsI~d~~Vv~W~-Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~  512 (712)
T KOG0283|consen  434 VRLWSISDKKVVDWN-DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPG  512 (712)
T ss_pred             eEEeecCcCeeEeeh-hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCC
Confidence            999999887765444 355889999999999999999999999999999877665551          224677888875


Q ss_pred             C--cEEEEeeCCeEEEEecccCCCCCeeeeeecC--CCCCceEEEECCCCcEEEEeecCCcEEEEECCC
Q 023822          173 G--LVFAVAFGGYIRMFDARKYEKGPFDIFSVGG--DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR  237 (276)
Q Consensus       173 ~--~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  237 (276)
                      .  ++|+++.|..|+|||.+....    +..+.+  ....-....|+.||++|+++++|..|++|++..
T Consensus       513 ~~~~vLVTSnDSrIRI~d~~~~~l----v~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  513 DPDEVLVTSNDSRIRIYDGRDKDL----VHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             CCCeEEEecCCCceEEEeccchhh----hhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence            4  588898999999999976443    223332  223445678999999999999999999999743

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.5e-29  Score=178.23  Aligned_cols=208  Identities=17%  Similarity=0.231  Sum_probs=171.6

Q ss_pred             hccccceeeccCCCcEEEEEEcC-CCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccC-CeEEEeccCCC
Q 023822           22 QSMEVGMSFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP-TTVIYSSKNGW   99 (276)
Q Consensus        22 ~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~   99 (276)
                      .+-.++..+++|...|.++.|++ +...+++++.|++|++|+...++.++++.+|...|....|+|.. +.+++++.   
T Consensus        92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sg---  168 (311)
T KOG0277|consen   92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASG---  168 (311)
T ss_pred             CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccC---
Confidence            44457888999999999999998 56678889999999999999999999999999999999999964 56666666   


Q ss_pred             CCceEEEEccCCceeeeecccCcceEEEEecc-CCCEEEEeeCCCeEEEEeccCce-eeeeE--eecCCCeeEecCCC-c
Q 023822          100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEK-CQGLL--RVQGRPAAAYDDQG-L  174 (276)
Q Consensus       100 d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~-~~~~~--~~~~~~~~~~~~~~-~  174 (276)
                      |+.+++||++.......+..|..+|.++.|+. +.+.+++|+.|+.|+.||+++.+ ++..+  +.-.++.+.|+|.. .
T Consensus       169 d~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~  248 (311)
T KOG0277|consen  169 DGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHAS  248 (311)
T ss_pred             CceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhh
Confidence            99999999987655555889999999999987 55689999999999999999765 34444  44557899999976 4


Q ss_pred             EEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECC-CCcEEEEeecCCcEEEEEC
Q 023822          175 VFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDS  235 (276)
Q Consensus       175 ~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~  235 (276)
                      +|++++ |=++++||.......   +.....|..-+..+.|++ ++.++|+++-|+.++||+.
T Consensus       249 lLaSasYDmT~riw~~~~~ds~---~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  249 LLASASYDMTVRIWDPERQDSA---IETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             HhhhccccceEEecccccchhh---hhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            555555 999999999864421   333456777788899998 5678999999999999983

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.96  E-value=3.6e-29  Score=193.17  Aligned_cols=228  Identities=17%  Similarity=0.266  Sum_probs=201.5

Q ss_pred             CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCe--eeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCC
Q 023822           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN  111 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~  111 (276)
                      ..-|.++.+.|||+.|++|++-.++.|||+....  ...++....-.+..++.+||.+..+++..   ||.|.|||+.+.
T Consensus       465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccs---dGnI~vwDLhnq  541 (705)
T KOG0639|consen  465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCS---DGNIAVWDLHNQ  541 (705)
T ss_pred             ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeecc---CCcEEEEEcccc
Confidence            5678899999999999999999999999997543  33444444556888999999999999988   999999999999


Q ss_pred             ceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee-CCeEEEEec
Q 023822          112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDA  189 (276)
Q Consensus       112 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~  189 (276)
                      ..++.|++|.+.+.||.++++|..|.+|+-|++|+.||+++++..... ....+.++.++|++.++++|. ++.+.+...
T Consensus       542 ~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~  621 (705)
T KOG0639|consen  542 TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHT  621 (705)
T ss_pred             eeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEec
Confidence            999999999999999999999999999999999999999998877665 445678899999999999999 788888887


Q ss_pred             ccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEe
Q 023822          190 RKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG  269 (276)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  269 (276)
                      ...+     .+.+..|.+.|.++.|.+.|+++++.+.|+.+..|.+.-|..+...+    ..+.|.++.+|.|.+++++|
T Consensus       622 skp~-----kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk----E~SsVlsCDIS~ddkyIVTG  692 (705)
T KOG0639|consen  622 SKPE-----KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK----ESSSVLSCDISFDDKYIVTG  692 (705)
T ss_pred             CCcc-----ceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc----ccCcceeeeeccCceEEEec
Confidence            7644     45566788899999999999999999999999999999998887776    57899999999999999999


Q ss_pred             cCCC
Q 023822          270 RVSP  273 (276)
Q Consensus       270 ~~dg  273 (276)
                      +.|.
T Consensus       693 SGdk  696 (705)
T KOG0639|consen  693 SGDK  696 (705)
T ss_pred             CCCc
Confidence            9985

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.4e-28  Score=180.20  Aligned_cols=239  Identities=16%  Similarity=0.205  Sum_probs=202.7

Q ss_pred             ccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCc
Q 023822           23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES  102 (276)
Q Consensus        23 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~  102 (276)
                      ..+.++.+.||.+.|..++.......+.+++.|.+.+||.+++++++..+.+|.+.|.++.|++.+..+++++.   |++
T Consensus       137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSG---D~t  213 (481)
T KOG0300|consen  137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASG---DET  213 (481)
T ss_pred             eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccC---Ccc
Confidence            45667788999999999999887789999999999999999999999999999999999999999999999988   999


Q ss_pred             eEEEEc------cC----------------------------------CceeeeecccCcceEEEEeccCCCEEEEeeCC
Q 023822          103 LRLLSL------HD----------------------------------NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLD  142 (276)
Q Consensus       103 i~~~d~------~~----------------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  142 (276)
                      -.||..      ..                                  ..++..+.+|.+.|.+..|...++.+++++.|
T Consensus       214 aHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWD  293 (481)
T KOG0300|consen  214 AHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWD  293 (481)
T ss_pred             hHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecc
Confidence            999972      11                                  01344577899999999999999999999999


Q ss_pred             CeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCc
Q 023822          143 RTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR  219 (276)
Q Consensus       143 ~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  219 (276)
                      .+..+||+++++.+..+  |......++-+|..+++++++ |.+.++||.+..-   .....+.+|...|+++.|..+.+
T Consensus       294 RTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI---~sV~VFQGHtdtVTS~vF~~dd~  370 (481)
T KOG0300|consen  294 RTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAI---QSVAVFQGHTDTVTSVVFNTDDR  370 (481)
T ss_pred             ccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhc---ceeeeecccccceeEEEEecCCc
Confidence            99999999999999988  666678889999999998888 9999999998422   23556789999999999998765


Q ss_pred             EEEEeecCCcEEEEECCCCc-EEEEeecCCCCCCceEEEEECCCCcEEEEecCC
Q 023822          220 LMLLTTMEGHIHVLDSFRGT-LLSTYNVKPVSRNSTLEASFSPEGMFVISGRVS  272 (276)
Q Consensus       220 ~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  272 (276)
                       +++|+.|.+|++||+++.. ++.++.    ..++++.++.+..++.++.--++
T Consensus       371 -vVSgSDDrTvKvWdLrNMRsplATIR----tdS~~NRvavs~g~~iIAiPhDN  419 (481)
T KOG0300|consen  371 -VVSGSDDRTVKVWDLRNMRSPLATIR----TDSPANRVAVSKGHPIIAIPHDN  419 (481)
T ss_pred             -eeecCCCceEEEeeeccccCcceeee----cCCccceeEeecCCceEEeccCC
Confidence             8899999999999998754 566666    56777888877766666654433

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.1e-26  Score=169.08  Aligned_cols=241  Identities=10%  Similarity=0.152  Sum_probs=190.1

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccC----CeeeeeeeeeeeceEEEEEec--cCCeEEEeccCCCCCceE
Q 023822           31 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA----ATCLKTINSKKYGVDLVCFTS--HPTTVIYSSKNGWDESLR  104 (276)
Q Consensus        31 ~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~~d~~i~  104 (276)
                      .+|.+-|.++.|.+.|+.+|+|+.|++++|||..+    ..+....+.|.+.|..+.|.+  -|+.+++++.   |+++.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~---Drtv~   86 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSY---DRTVS   86 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEec---CCcee
Confidence            47899999999999999999999999999999653    356777889999999999986  4788999998   99999


Q ss_pred             EEEccC---------CceeeeecccCcceEEEEeccC--CCEEEEeeCCCeEEEEeccCceeeee------Ee-------
Q 023822          105 LLSLHD---------NKYLRYFKGHHDRVVSLSLCSS--KDCFISGSLDRTVLLWDQRAEKCQGL------LR-------  160 (276)
Q Consensus       105 ~~d~~~---------~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~------~~-------  160 (276)
                      ||.-..         .....++......|+++.|.|.  |-++++++.||.++||+....-....      +.       
T Consensus        87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~  166 (361)
T KOG2445|consen   87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG  166 (361)
T ss_pred             eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence            997521         1234456677889999999995  56899999999999998765432222      21       


Q ss_pred             --ecCCCeeEecCCC---cEEEEeeCC------eEEEEecccCCCCCeeeeeecCCCCCceEEEECCC-C---cEEEEee
Q 023822          161 --VQGRPAAAYDDQG---LVFAVAFGG------YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-G---RLMLLTT  225 (276)
Q Consensus       161 --~~~~~~~~~~~~~---~~l~~~~d~------~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~---~~l~~~~  225 (276)
                        ...-.|+.|+|..   .+++++++.      .+++|..............+..|..+|+.++|.|+ |   ..||+++
T Consensus       167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~  246 (361)
T KOG2445|consen  167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT  246 (361)
T ss_pred             cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEee
Confidence              1123378888753   688888855      89999887766555556778899999999999996 2   5789999


Q ss_pred             cCCcEEEEECCCCc-----------------EEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          226 MEGHIHVLDSFRGT-----------------LLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       226 ~dg~i~i~d~~~~~-----------------~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      .|| |+||.+....                 .+..+.....|.+.|..+.|+-.|..|++.|.||.|
T Consensus       247 kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~V  312 (361)
T KOG2445|consen  247 KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCV  312 (361)
T ss_pred             cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCcee
Confidence            999 9999986311                 122233333799999999999999999999999987

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=6.6e-28  Score=197.24  Aligned_cols=225  Identities=19%  Similarity=0.296  Sum_probs=196.6

Q ss_pred             CCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeee-eeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCC
Q 023822           33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKT-INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN  111 (276)
Q Consensus        33 h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~  111 (276)
                      |...+.+..|.  ..++++++.|++|++||..++..+.. +.+|.+.|.++++..-+..+++|+.   |.++++||..++
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~---D~t~rvWd~~sg  281 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGST---DKTERVWDCSTG  281 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEec---CCcEEeEecCCC
Confidence            56778888888  56899999999999999999998888 9999999999999887889999998   999999999999


Q ss_pred             ceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEeeCCeEEEEec
Q 023822          112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAFGGYIRMFDA  189 (276)
Q Consensus       112 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~  189 (276)
                      ++...+.+|.+.+.++...  ...+++|+.|.+|++|++.++..+..+  +...+.++.++ .+.+++++.|+.|++||+
T Consensus       282 ~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-~~~lvsgs~d~~v~VW~~  358 (537)
T KOG0274|consen  282 ECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-EPLLVSGSYDGTVKVWDP  358 (537)
T ss_pred             cEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-CCEEEEEecCceEEEEEh
Confidence            9999999999999998774  457888999999999999999999888  45567777777 445555555999999999


Q ss_pred             ccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCC-cEEEEeecCCCCCCceEEEEECCCCcEEEE
Q 023822          190 RKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG-TLLSTYNVKPVSRNSTLEASFSPEGMFVIS  268 (276)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  268 (276)
                      .+++.    +..+.+|...|.++.+.+. ..+++|+.|+.|++||+.+. +++..+.   +|..-+..+.+  .+++|++
T Consensus       359 ~~~~c----l~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~---~h~~~v~~l~~--~~~~Lvs  428 (537)
T KOG0274|consen  359 RTGKC----LKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQ---GHTSLVSSLLL--RDNFLVS  428 (537)
T ss_pred             hhcee----eeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhc---CCccccccccc--ccceeEe
Confidence            98776    7788899999999988776 78999999999999999999 8999998   67777765554  6679999


Q ss_pred             ecCCCCC
Q 023822          269 GRVSPFS  275 (276)
Q Consensus       269 ~~~dg~v  275 (276)
                      ++.||+|
T Consensus       429 ~~aD~~I  435 (537)
T KOG0274|consen  429 SSADGTI  435 (537)
T ss_pred             ccccccE
Confidence            9999975

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=7.2e-29  Score=180.89  Aligned_cols=202  Identities=20%  Similarity=0.297  Sum_probs=172.4

Q ss_pred             eeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccC------------C------ceeeeecccCcceEEEEec
Q 023822           69 LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD------------N------KYLRYFKGHHDRVVSLSLC  130 (276)
Q Consensus        69 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~------------~------~~~~~~~~~~~~i~~~~~~  130 (276)
                      ...+..|+.++.+.+|++||..+++|+.   |..|++.|++.            +      ..++++..|.++|+++.|+
T Consensus       105 t~ylt~HK~~cR~aafs~DG~lvATGsa---D~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FH  181 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSPDGSLVATGSA---DASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFH  181 (430)
T ss_pred             eEEEeecccceeeeeeCCCCcEEEccCC---cceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeec
Confidence            3456789999999999999999999998   99999999862            1      2466788899999999999


Q ss_pred             cCCCEEEEeeCCCeEEEEeccCceeeeeE----eecCCCeeEecCCCcEEEEeeC-CeEEEEecccCCCCCeeeeeecCC
Q 023822          131 SSKDCFISGSLDRTVLLWDQRAEKCQGLL----RVQGRPAAAYDDQGLVFAVAFG-GYIRMFDARKYEKGPFDIFSVGGD  205 (276)
Q Consensus       131 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~d-~~i~~~d~~~~~~~~~~~~~~~~~  205 (276)
                      |....|++++.|++|+++|+......+.+    ...++.++.|+|.|.+++++.| ..+++||+.+.+.- .....-..|
T Consensus       182 Pre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcf-vsanPd~qh  260 (430)
T KOG0640|consen  182 PRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCF-VSANPDDQH  260 (430)
T ss_pred             chhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEe-eecCccccc
Confidence            99999999999999999999865443332    5677899999999999999996 89999999986641 111234567


Q ss_pred             CCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          206 ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       206 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      ...|+++.+++.|++.++++.||.|++||--+++++.++.... ....|.+..|..+|+|+++.+.|.+|
T Consensus       261 t~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH-~gsevcSa~Ftkn~kyiLsSG~DS~v  329 (430)
T KOG0640|consen  261 TGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAH-GGSEVCSAVFTKNGKYILSSGKDSTV  329 (430)
T ss_pred             ccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhc-CCceeeeEEEccCCeEEeecCCccee
Confidence            8899999999999999999999999999999999999987643 35679999999999999999999876

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=2.1e-26  Score=161.26  Aligned_cols=249  Identities=15%  Similarity=0.175  Sum_probs=191.3

Q ss_pred             HHhhccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEcc------CCe---------eeeeeeeeeeceEEEE
Q 023822           19 EILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVT------AAT---------CLKTINSKKYGVDLVC   83 (276)
Q Consensus        19 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~------~~~---------~~~~~~~~~~~v~~~~   83 (276)
                      ...+.++.+..+.. ...|.+++|+|.|.+.++|+...+++|-...      .+.         .-..-+.|.+.|.|.+
T Consensus        18 ~~k~~f~~i~~l~d-sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~   96 (350)
T KOG0641|consen   18 KEKKHFEAINILED-SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTA   96 (350)
T ss_pred             ccccceEEEEEecc-hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEE
Confidence            33455666666654 6789999999999999999999999886432      111         1122346788999999


Q ss_pred             EeccCCeEEEeccCCCCCceEEEEccCCce-----eeeecccCcceEEEEeccC----CCEEEEeeC-CCeEEEEeccCc
Q 023822           84 FTSHPTTVIYSSKNGWDESLRLLSLHDNKY-----LRYFKGHHDRVVSLSLCSS----KDCFISGSL-DRTVLLWDQRAE  153 (276)
Q Consensus        84 ~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~-----~~~~~~~~~~i~~~~~~~~----~~~l~~~~~-d~~i~iwd~~~~  153 (276)
                      |+|+|+.+++++.   |..|++...+...+     -..+.-|.+.|..++|..+    +.+|++++. |..|++-|...+
T Consensus        97 ws~~geliatgsn---dk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g  173 (350)
T KOG0641|consen   97 WSPCGELIATGSN---DKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG  173 (350)
T ss_pred             ecCccCeEEecCC---CceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC
Confidence            9999999999998   99999987765432     2356779999999999753    446777654 778888899888


Q ss_pred             eeeeeEeecCCCee-EecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecC---CCCCceEEEECCCCcEEEEeecCC
Q 023822          154 KCQGLLRVQGRPAA-AYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGG---DISDANVVKFSNDGRLMLLTTMEG  228 (276)
Q Consensus       154 ~~~~~~~~~~~~~~-~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg  228 (276)
                      +..+.+..+.-..+ .++-++-.++.++ |.+|++||++-.......-..+..   ..+.|.+++..|.|++|++|-.|.
T Consensus       174 ~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~ds  253 (350)
T KOG0641|consen  174 QGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADS  253 (350)
T ss_pred             CcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCC
Confidence            88888754443333 3456777888887 999999999875431111111111   235789999999999999999999


Q ss_pred             cEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCC
Q 023822          229 HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPF  274 (276)
Q Consensus       229 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~  274 (276)
                      ...+||++.+..++.+.   .|...|.++.|+|...||++++.|-.
T Consensus       254 sc~lydirg~r~iq~f~---phsadir~vrfsp~a~yllt~syd~~  296 (350)
T KOG0641|consen  254 SCMLYDIRGGRMIQRFH---PHSADIRCVRFSPGAHYLLTCSYDMK  296 (350)
T ss_pred             ceEEEEeeCCceeeeeC---CCccceeEEEeCCCceEEEEecccce
Confidence            99999999999999998   69999999999999999999998853

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.5e-27  Score=188.99  Aligned_cols=207  Identities=14%  Similarity=0.192  Sum_probs=182.8

Q ss_pred             cccceeecc-CCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeee-eeeeeeceEEEEEeccCCeEEEeccCCCCC
Q 023822           24 MEVGMSFRD-YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKT-INSKKYGVDLVCFTSHPTTVIYSSKNGWDE  101 (276)
Q Consensus        24 ~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~  101 (276)
                      .+....+.+ |...|-+++|+  +..+.+|+.|+.|..+|+...+.... +.+|...|..+.|++++.++++++.   |+
T Consensus       249 ~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgn---DN  323 (484)
T KOG0305|consen  249 QKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGN---DN  323 (484)
T ss_pred             ccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCC---cc
Confidence            445566777 99999999998  57899999999999999998776555 8889999999999999999999998   99


Q ss_pred             ceEEEEccCCceeeeecccCcceEEEEecc-CCCEEEEee--CCCeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEE
Q 023822          102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCS-SKDCFISGS--LDRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFA  177 (276)
Q Consensus       102 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~--~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~  177 (276)
                      .+.|||....++...+..|.+.|..++|+| ...+||+|+  .|+.|++||..+++.+..+ ....|..+.|++..+-++
T Consensus       324 ~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~  403 (484)
T KOG0305|consen  324 VVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELL  403 (484)
T ss_pred             ceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEE
Confidence            999999988889999999999999999999 455888875  4999999999999999888 666789999999885555


Q ss_pred             Eee---CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCc
Q 023822          178 VAF---GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT  239 (276)
Q Consensus       178 ~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  239 (276)
                      ++.   ++.|.+|+..+.+.    ...+.+|...|..++++|||..+++|+.|.++++|++.+..
T Consensus       404 sthG~s~n~i~lw~~ps~~~----~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~~  464 (484)
T KOG0305|consen  404 STHGYSENQITLWKYPSMKL----VAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDER  464 (484)
T ss_pred             EecCCCCCcEEEEeccccce----eeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCCC
Confidence            544   68999999988655    77788999999999999999999999999999999987653

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.3e-27  Score=175.09  Aligned_cols=246  Identities=16%  Similarity=0.240  Sum_probs=201.9

Q ss_pred             hccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEc------cC------------------------------
Q 023822           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDV------TA------------------------------   65 (276)
Q Consensus        22 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~------~~------------------------------   65 (276)
                      ++.+...++.||.+.|++++|++.+.++++++.|++-.||..      ..                              
T Consensus       178 Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD  257 (481)
T KOG0300|consen  178 ESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSD  257 (481)
T ss_pred             ccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccC
Confidence            345667889999999999999999999999999999999972      10                              


Q ss_pred             ----CeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeC
Q 023822           66 ----ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL  141 (276)
Q Consensus        66 ----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  141 (276)
                          ..++..+.+|...|.+..|...++.+++++-   |.+-.+||+++++++..+.+|....+.++-+|..+++++.+.
T Consensus       258 ~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSW---DRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSr  334 (481)
T KOG0300|consen  258 GHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASW---DRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSR  334 (481)
T ss_pred             CceeeeeeeeeeccccceEehhhhcCcceeeeeec---cccceeeeeccCceeccccCcchhccccccCCcceEEEEecc
Confidence                0134567788889999999999999999986   999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeccCc-eeeeeE--eecCCCeeEecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCC
Q 023822          142 DRTVLLWDQRAE-KCQGLL--RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG  218 (276)
Q Consensus       142 d~~i~iwd~~~~-~~~~~~--~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  218 (276)
                      |.+.++||++.. ..+..+  |...+.++.|..+.+++.++.|.+|++||+++.+.+.. ...   ...+++.++.+..+
T Consensus       335 DtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplA-TIR---tdS~~NRvavs~g~  410 (481)
T KOG0300|consen  335 DTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLA-TIR---TDSPANRVAVSKGH  410 (481)
T ss_pred             CceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcce-eee---cCCccceeEeecCC
Confidence            999999999943 233444  56678899999999998888899999999999775322 222   34588999999988


Q ss_pred             cEEEEeecCCcEEEEECCCCcEEEEee--cCCCCCCceEEEEECCCC--cEEEEecCCCCC
Q 023822          219 RLMLLTTMEGHIHVLDSFRGTLLSTYN--VKPVSRNSTLEASFSPEG--MFVISGRVSPFS  275 (276)
Q Consensus       219 ~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~v~~~~~s~~g--~~l~~~~~dg~v  275 (276)
                      +.++.--.+..|++||+. |..+..+.  ...+|..-|.+++|..+-  .-|++++-|..|
T Consensus       411 ~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v  470 (481)
T KOG0300|consen  411 PIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMV  470 (481)
T ss_pred             ceEEeccCCceEEEEecC-CCccccCCcccccccceeeeeeeccccCccccccccccccee
Confidence            889888888999999985 44444443  233788899999997654  347788777654

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.96  E-value=2.8e-27  Score=188.82  Aligned_cols=242  Identities=16%  Similarity=0.231  Sum_probs=204.8

Q ss_pred             eeehHHHhhccccceeeccCCCcEEE-EEEcC-CCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeE
Q 023822           14 LELSEEILQSMEVGMSFRDYNGRISS-MDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTV   91 (276)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   91 (276)
                      +.+++...+.+.....+.+|.+-|.+ ++|-+ ++-.|++|+.|.++.+|......+...+.+|+..|.++....++. +
T Consensus        37 ~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~  115 (745)
T KOG0301|consen   37 VKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-L  115 (745)
T ss_pred             eeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-e
Confidence            44455545556666778889888887 88876 555699999999999999999999999999999999999877776 7


Q ss_pred             EEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEe
Q 023822           92 IYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAY  169 (276)
Q Consensus        92 ~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~  169 (276)
                      ++++-   |.++++|.+  +++...+.+|+..|++++.-|++ .+++|+.|.+|++|.-  ++..+++  |...++.+++
T Consensus       116 iSgSW---D~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~v  187 (745)
T KOG0301|consen  116 ISGSW---DSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAV  187 (745)
T ss_pred             Eeccc---ccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEE
Confidence            88775   999999976  45566699999999999999988 7999999999999985  5566666  7777999999


Q ss_pred             cCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCC
Q 023822          170 DDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV  249 (276)
Q Consensus       170 ~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  249 (276)
                      -+++.++.++.||.|++|++. ++.    +....+|..-+.++...+++..++++++|++++||+..  ++.+.+.   .
T Consensus       188 l~~~~flScsNDg~Ir~w~~~-ge~----l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~---l  257 (745)
T KOG0301|consen  188 LDDSHFLSCSNDGSIRLWDLD-GEV----LLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT---L  257 (745)
T ss_pred             ecCCCeEeecCCceEEEEecc-Cce----eeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe---c
Confidence            999999999999999999994 443    77788999999999988888899999999999999965  7888887   3


Q ss_pred             CCCceEEEEECCCCcEEEEecCCCCC
Q 023822          250 SRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       250 ~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      ....|+++.+-++|. +++|++||.|
T Consensus       258 PttsiWsa~~L~NgD-Ivvg~SDG~V  282 (745)
T KOG0301|consen  258 PTTSIWSAKVLLNGD-IVVGGSDGRV  282 (745)
T ss_pred             CccceEEEEEeeCCC-EEEeccCceE
Confidence            455899999998887 6678888875

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3.1e-26  Score=167.30  Aligned_cols=221  Identities=15%  Similarity=0.147  Sum_probs=179.5

Q ss_pred             cceeeccCCCcEEEEEEcCCCC--EEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822           26 VGMSFRDYNGRISSMDFHKSSS--YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (276)
Q Consensus        26 ~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i  103 (276)
                      ....+-.|.+.|+++.|.+.-.  .|++|+.||.|.+|+.....++..+++|.+.|+.++.+|.++..++.+.   |+.+
T Consensus        75 qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~---D~~l  151 (362)
T KOG0294|consen   75 QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGG---DQVL  151 (362)
T ss_pred             hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcC---Ccee
Confidence            3455668999999999998654  8999999999999999999999999999999999999999999998888   9999


Q ss_pred             EEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEeeCC
Q 023822          104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAFGG  182 (276)
Q Consensus       104 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~d~  182 (276)
                      +.||+-.++....++- ......+.|+|.|.+|+....+ .|-+|.+.+......+ ....+.++.|...+.+++++.|+
T Consensus       152 r~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~  229 (362)
T KOG0294|consen  152 RTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNE  229 (362)
T ss_pred             eeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCc
Confidence            9999998876555442 2223459999999999988876 5899999887776666 33446677888888888888899


Q ss_pred             eEEEEecccCCCCCeeeeeecCCCCCceEEEE--CCCCcEEEEeecCCcEEEEECCCC-----cEEEEeecCCCCCCceE
Q 023822          183 YIRMFDARKYEKGPFDIFSVGGDISDANVVKF--SNDGRLMLLTTMEGHIHVLDSFRG-----TLLSTYNVKPVSRNSTL  255 (276)
Q Consensus       183 ~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~~~v~  255 (276)
                      .|.+||......    ...+.+|...|..+.+  .|++.+|++++.||.|++||++..     +++..+.    ....++
T Consensus       230 ~i~~~D~ds~~~----~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n----~~~Rlt  301 (362)
T KOG0294|consen  230 WISLKDTDSDTP----LTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELN----TNVRLT  301 (362)
T ss_pred             eEEEeccCCCcc----ceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEee----cCCccc
Confidence            999999987443    6667789999999884  467899999999999999998765     4455554    345555


Q ss_pred             EEEE
Q 023822          256 EASF  259 (276)
Q Consensus       256 ~~~~  259 (276)
                      ++..
T Consensus       302 Cl~~  305 (362)
T KOG0294|consen  302 CLRV  305 (362)
T ss_pred             eeee
Confidence            5544

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=8.5e-28  Score=190.51  Aligned_cols=206  Identities=17%  Similarity=0.228  Sum_probs=180.1

Q ss_pred             cceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCC--eeeeeeeeeeeceEEEEE-eccCCeEEEeccCCCCCc
Q 023822           26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA--TCLKTINSKKYGVDLVCF-TSHPTTVIYSSKNGWDES  102 (276)
Q Consensus        26 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~~~~d~~  102 (276)
                      ....++.|...|+.++...+++.|+++|.|-+|++|+...+  -+..++..|...|.|++. .++...+++|+-   |+.
T Consensus        65 ~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGL---D~~  141 (735)
T KOG0308|consen   65 YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGL---DRK  141 (735)
T ss_pred             hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCC---Ccc
Confidence            45678899999999999999999999999999999999877  577888999999999999 778888888887   999


Q ss_pred             eEEEEccCCce----------eeeec-ccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEe
Q 023822          103 LRLLSLHDNKY----------LRYFK-GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAY  169 (276)
Q Consensus       103 i~~~d~~~~~~----------~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~  169 (276)
                      |.+||++++..          ...+. ++...|++++.++.+..+++|+..+.+++||.++.+.+..+  |...++.+..
T Consensus       142 IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~  221 (735)
T KOG0308|consen  142 IFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLV  221 (735)
T ss_pred             EEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEE
Confidence            99999997722          22233 78889999999999999999999999999999999888888  6667889999


Q ss_pred             cCCCcEEE-EeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCC
Q 023822          170 DDQGLVFA-VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG  238 (276)
Q Consensus       170 ~~~~~~l~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  238 (276)
                      +++|..+. +++||+|++||+...++    +..+..|...+.++..+|+=..+++|+.||.|..=|+++.
T Consensus       222 ~dDGt~~ls~sSDgtIrlWdLgqQrC----l~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  222 NDDGTRLLSASSDGTIRLWDLGQQRC----LATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             cCCCCeEeecCCCceEEeeeccccce----eeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence            99995555 45599999999998776    6667778888999999999999999999999999999884

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=3.9e-26  Score=187.49  Aligned_cols=238  Identities=13%  Similarity=0.137  Sum_probs=196.4

Q ss_pred             cCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCC-eeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccC
Q 023822           32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA-TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD  110 (276)
Q Consensus        32 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~  110 (276)
                      .|+..-+.++|.|+|++|++++.||.|++|+.... +....+..+...|.+++.  ...+|++++.   ++.|.+|.+..
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~---~~tv~~y~fps   85 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSE---QNTVLRYKFPS   85 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeec---cceEEEeeCCC
Confidence            68889999999999999999999999999997655 333444435566776666  5569999998   99999999999


Q ss_pred             CceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-CCeEEEE
Q 023822          111 NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-GGYIRMF  187 (276)
Q Consensus       111 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d~~i~~~  187 (276)
                      ++.-..+....-++.+++|+.+|++++.|+.|-.|++-++........+  +..++.++.|+|.+.+||++. ||.|++|
T Consensus        86 ~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw  165 (933)
T KOG1274|consen   86 GEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW  165 (933)
T ss_pred             CCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence            8877677777889999999999999999999999999999988777777  666788999999999999998 9999999


Q ss_pred             ecccCCCCCeeeee---ecC-CCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCC
Q 023822          188 DARKYEKGPFDIFS---VGG-DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG  263 (276)
Q Consensus       188 d~~~~~~~~~~~~~---~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  263 (276)
                      |+..+.......-.   ... ....+..++|+|+|..+++...|+.|.+|+..+......+.... +...+..++|+|+|
T Consensus       166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~-~ss~~~~~~wsPnG  244 (933)
T KOG1274|consen  166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKL-SSSKFSDLQWSPNG  244 (933)
T ss_pred             EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccc-cccceEEEEEcCCC
Confidence            99986532111000   001 13456779999998888888899999999999999988887554 44559999999999


Q ss_pred             cEEEEecCCCCC
Q 023822          264 MFVISGRVSPFS  275 (276)
Q Consensus       264 ~~l~~~~~dg~v  275 (276)
                      +|||+++.||-|
T Consensus       245 ~YiAAs~~~g~I  256 (933)
T KOG1274|consen  245 KYIAASTLDGQI  256 (933)
T ss_pred             cEEeeeccCCcE
Confidence            999999999865

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.6e-27  Score=192.38  Aligned_cols=231  Identities=16%  Similarity=0.233  Sum_probs=188.6

Q ss_pred             EEEEEEcC-CCCEEEEeecCCeEEEEEccC---CeeeeeeeeeeeceEEEEEeccCC-eEEEeccCCCCCceEEEEccCC
Q 023822           37 ISSMDFHK-SSSYLVTASDDESIRLYDVTA---ATCLKTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDESLRLLSLHDN  111 (276)
Q Consensus        37 v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~d~~i~~~d~~~~  111 (276)
                      +..+.|+. +.++|||++..|.|.+||+..   .+.+..+..|+..++++.|++... +|++|+.   ||.|++||++..
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQ---Dg~vK~~DlR~~  166 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQ---DGTVKCWDLRSK  166 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCC---CceEEEEeeecc
Confidence            45577775 678999999999999999987   566778899999999999999765 5566666   999999999999


Q ss_pred             ceeeeecccCcceEEEEecc-CCCEEEEeeCCCeEEEEeccCce-eeeeE--eecCCCeeEecCCCcEEEEee-CCeEEE
Q 023822          112 KYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEK-CQGLL--RVQGRPAAAYDDQGLVFAVAF-GGYIRM  186 (276)
Q Consensus       112 ~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~-~~~~~--~~~~~~~~~~~~~~~~l~~~~-d~~i~~  186 (276)
                      +-..++.+....|.++.|+| .+..|+++...|.+.+||+|... +...+  |.+++.++.|+|++.+||+|+ |+.|+|
T Consensus       167 ~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vki  246 (839)
T KOG0269|consen  167 KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKI  246 (839)
T ss_pred             cccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEE
Confidence            98889988889999999999 46689999999999999999764 33333  778899999999999999998 999999


Q ss_pred             EecccCCCCCeeeeeecCCCCCceEEEECCCCcE-EEEee--cCCcEEEEECCCCcE-EEEeecCCCCCCceEEEEECC-
Q 023822          187 FDARKYEKGPFDIFSVGGDISDANVVKFSNDGRL-MLLTT--MEGHIHVLDSFRGTL-LSTYNVKPVSRNSTLEASFSP-  261 (276)
Q Consensus       187 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~--~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~s~-  261 (276)
                      ||+...+..+.....   ...++.++.|-|..++ ||+++  .|-.|+|||++..-. ...+.   .|...++.++|.. 
T Consensus       247 Wd~t~~~~~~~~tIn---Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~---eH~~~vt~i~W~~~  320 (839)
T KOG0269|consen  247 WDMTDSRAKPKHTIN---TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFL---EHTDSVTGIAWDSG  320 (839)
T ss_pred             EeccCCCccceeEEe---ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeee---ccCccccceeccCC
Confidence            999976654433332   3468999999998755 55554  477899999875443 34555   5889999999965 


Q ss_pred             CCcEEEEecCCCCCC
Q 023822          262 EGMFVISGRVSPFSS  276 (276)
Q Consensus       262 ~g~~l~~~~~dg~vs  276 (276)
                      |-..|.+++.||+|.
T Consensus       321 d~~~l~s~sKD~tv~  335 (839)
T KOG0269|consen  321 DRINLWSCSKDGTVL  335 (839)
T ss_pred             CceeeEeecCccHHH
Confidence            557899999999873

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.95  E-value=8.1e-27  Score=177.66  Aligned_cols=211  Identities=15%  Similarity=0.207  Sum_probs=170.6

Q ss_pred             ccccceeeccCCCcEEEEEEcCC-CCEEEEeecCCeEEEEEccCCe-------eeeeeeeeeeceEEEEEeccCC-eEEE
Q 023822           23 SMEVGMSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTAAT-------CLKTINSKKYGVDLVCFTSHPT-TVIY   93 (276)
Q Consensus        23 ~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~-~l~~   93 (276)
                      ...+...|.+|.+.-+.++|++. .-.|++++.|++|++||+....       +...+.+|...|..++|++... .+.+
T Consensus       166 ~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~s  245 (422)
T KOG0264|consen  166 ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGS  245 (422)
T ss_pred             cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhhee
Confidence            44566689999998899999984 4478999999999999997432       3456789999999999999654 5566


Q ss_pred             eccCCCCCceEEEEcc--CCceeeeecccCcceEEEEeccC-CCEEEEeeCCCeEEEEeccCcee-eeeE--eecCCCee
Q 023822           94 SSKNGWDESLRLLSLH--DNKYLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKC-QGLL--RVQGRPAA  167 (276)
Q Consensus        94 ~~~~~~d~~i~~~d~~--~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~-~~~~--~~~~~~~~  167 (276)
                      ++.   |+.+.|||++  +.++.....+|.+.|.|++|+|- +..||+|+.|++|.+||+|+... +..+  +...+..+
T Consensus       246 v~d---d~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V  322 (422)
T KOG0264|consen  246 VGD---DGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQV  322 (422)
T ss_pred             ecC---CCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEE
Confidence            666   9999999999  56677788899999999999995 55899999999999999998644 3444  66678899


Q ss_pred             EecCCC-cEEEEee-CCeEEEEecccCCC----------CCeeeeeecCCCCCceEEEECCCCcE-EEEeecCCcEEEEE
Q 023822          168 AYDDQG-LVFAVAF-GGYIRMFDARKYEK----------GPFDIFSVGGDISDANVVKFSNDGRL-MLLTTMEGHIHVLD  234 (276)
Q Consensus       168 ~~~~~~-~~l~~~~-d~~i~~~d~~~~~~----------~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~i~d  234 (276)
                      .|+|.. .+|+++. |+.+.+||+..-..          ++-.++...+|...|..+.|+|+..+ +++.+.|+.+.||.
T Consensus       323 ~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~  402 (422)
T KOG0264|consen  323 EWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ  402 (422)
T ss_pred             EeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence            999987 4555555 99999999975332          23335777899999999999998765 66788999999999


Q ss_pred             CC
Q 023822          235 SF  236 (276)
Q Consensus       235 ~~  236 (276)
                      +.
T Consensus       403 ~s  404 (422)
T KOG0264|consen  403 MA  404 (422)
T ss_pred             cc
Confidence            75

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.95  E-value=9.2e-25  Score=171.09  Aligned_cols=240  Identities=15%  Similarity=0.204  Sum_probs=176.4

Q ss_pred             ccceeeccCCCcEEEEEEcCCCCEE-EEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822           25 EVGMSFRDYNGRISSMDFHKSSSYL-VTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (276)
Q Consensus        25 ~~~~~~~~h~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i  103 (276)
                      +....+..|.. +.+++|+|+++.+ ++++.++.|++||..+++....+..+. .+..++|+|+++.+++++..  ++.|
T Consensus        22 ~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~--~~~l   97 (300)
T TIGR03866        22 EVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFALHPNGKILYIANED--DNLV   97 (300)
T ss_pred             ceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEEECCCCCEEEEEcCC--CCeE
Confidence            34555665543 6789999999876 566788999999999988877666543 35678999999988766432  7899


Q ss_pred             EEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCC-eEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee-
Q 023822          104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR-TVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF-  180 (276)
Q Consensus       104 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-  180 (276)
                      ++||+.+.+.+..+.. ...+.+++|+|++++++++..++ .+.+||.++.+..... .......+.|+|+++.++++. 
T Consensus        98 ~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  176 (300)
T TIGR03866        98 TVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSE  176 (300)
T ss_pred             EEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcC
Confidence            9999998877776653 34468899999999999888765 5677899887766544 333456789999998775443 


Q ss_pred             -CCeEEEEecccCCCCCeeeeeecC-----CCCCceEEEECCCCcEEEEe-ecCCcEEEEECCCCcEEEEeecCCCCCCc
Q 023822          181 -GGYIRMFDARKYEKGPFDIFSVGG-----DISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTLLSTYNVKPVSRNS  253 (276)
Q Consensus       181 -d~~i~~~d~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  253 (276)
                       ++.|++||+++.+...  ......     .......++|+|++++++++ +.++.+.+||..+++.+..+.    +...
T Consensus       177 ~~~~v~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~----~~~~  250 (300)
T TIGR03866       177 IGGTVSVIDVATRKVIK--KITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL----VGQR  250 (300)
T ss_pred             CCCEEEEEEcCcceeee--eeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE----eCCC
Confidence             8999999998765311  111111     11134568999999986554 456789999999988876654    3457


Q ss_pred             eEEEEECCCCcEEEEec-CCCCC
Q 023822          254 TLEASFSPEGMFVISGR-VSPFS  275 (276)
Q Consensus       254 v~~~~~s~~g~~l~~~~-~dg~v  275 (276)
                      +.+++|+|+|++|++++ .+|.+
T Consensus       251 ~~~~~~~~~g~~l~~~~~~~~~i  273 (300)
T TIGR03866       251 VWQLAFTPDEKYLLTTNGVSNDV  273 (300)
T ss_pred             cceEEECCCCCEEEEEcCCCCeE
Confidence            88999999999998864 46654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.95  E-value=1.9e-26  Score=172.11  Aligned_cols=242  Identities=15%  Similarity=0.212  Sum_probs=185.8

Q ss_pred             eeeccCCCcEEEEEEcCCC--CEEEEeecCCeEEEEEccC----------------CeeeeeeeeeeeceEEEEEeccCC
Q 023822           28 MSFRDYNGRISSMDFHKSS--SYLVTASDDESIRLYDVTA----------------ATCLKTINSKKYGVDLVCFTSHPT   89 (276)
Q Consensus        28 ~~~~~h~~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~----------------~~~~~~~~~~~~~v~~~~~~~~~~   89 (276)
                      ...-.|.+.++.+.-++-+  .+.|+-+..|.|.||++..                .+++.++.+|...-..+.|+|-..
T Consensus       145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~  224 (440)
T KOG0302|consen  145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT  224 (440)
T ss_pred             ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc
Confidence            3445688888888887754  4666777899999999742                356778888998899999999443


Q ss_pred             -eEEEeccCCCCCceEEEEccCCce---eeeecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCceeeeeE----e
Q 023822           90 -TVIYSSKNGWDESLRLLSLHDNKY---LRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLL----R  160 (276)
Q Consensus        90 -~l~~~~~~~~d~~i~~~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~----~  160 (276)
                       .+++|..   -+.|++|...++.-   ...+.+|...|-.++|+|..+ .|++|+-||+|+|||+|.+.....+    +
T Consensus       225 g~LlsGDc---~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh  301 (440)
T KOG0302|consen  225 GRLLSGDC---VKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAH  301 (440)
T ss_pred             cccccCcc---ccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeecc
Confidence             4777766   78999999888753   234567999999999999654 8999999999999999988433222    6


Q ss_pred             ecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCC-cEEEEeecCCcEEEEECCCC
Q 023822          161 VQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRG  238 (276)
Q Consensus       161 ~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~  238 (276)
                      ...++.+.|+..-.+|++|. ||++++||+|+.+.. ..+..+..|..+|+++.|+|.. ..|++++.|..|.+||+.-.
T Consensus       302 ~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~-~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE  380 (440)
T KOG0302|consen  302 NSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG-QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE  380 (440)
T ss_pred             CCceeeEEccCCcceeeecCCCceEEEEEhhhccCC-CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence            66789999999888888888 799999999987754 3456677899999999999964 67888899999999998521


Q ss_pred             cE----------------EEEeecCCCCCCceEEEEECCCC-cEEEEecCCCC
Q 023822          239 TL----------------LSTYNVKPVSRNSTLEASFSPEG-MFVISGRVSPF  274 (276)
Q Consensus       239 ~~----------------~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~  274 (276)
                      .-                .+.+-.| .....+..+.|++.- -+|++.+.||+
T Consensus       381 ~D~ee~~~~a~~~L~dlPpQLLFVH-qGQke~KevhWH~QiPG~lvsTa~dGf  432 (440)
T KOG0302|consen  381 ADEEEIDQEAAEGLQDLPPQLLFVH-QGQKEVKEVHWHRQIPGLLVSTAIDGF  432 (440)
T ss_pred             CChhhhccccccchhcCCceeEEEe-cchhHhhhheeccCCCCeEEEecccce
Confidence            11                0111111 134567888999865 47888888886

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=2.8e-26  Score=167.65  Aligned_cols=231  Identities=15%  Similarity=0.243  Sum_probs=182.8

Q ss_pred             EEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeee
Q 023822           37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRY  116 (276)
Q Consensus        37 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~  116 (276)
                      -.|+.|++.|.+||+|+.||.|.|||+.+....+.+.+|-.+|++++|+++|+.|++++.   |..|.+||+..+.+++.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~---D~si~lwDl~~gs~l~r  102 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSR---DWSIKLWDLLKGSPLKR  102 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecC---CceeEEEeccCCCceeE
Confidence            689999999999999999999999999999988999999999999999999999999999   99999999998876655


Q ss_pred             ecccCcceE-----------------------------------------------EEEeccCCCEEEEeeCCCeEEEEe
Q 023822          117 FKGHHDRVV-----------------------------------------------SLSLCSSKDCFISGSLDRTVLLWD  149 (276)
Q Consensus       117 ~~~~~~~i~-----------------------------------------------~~~~~~~~~~l~~~~~d~~i~iwd  149 (276)
                      +. ..++|+                                               +..|.+.|+++++|...|.+.++|
T Consensus       103 ir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~  181 (405)
T KOG1273|consen  103 IR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYD  181 (405)
T ss_pred             EE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEe
Confidence            43 111111                                               123555678999999999999999


Q ss_pred             ccCceeeeeEee---cCCCeeEecCCCcEEEEee-CCeEEEEecccCCCC-----Ceeeeee--cCCCCCceEEEECCCC
Q 023822          150 QRAEKCQGLLRV---QGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKG-----PFDIFSV--GGDISDANVVKFSNDG  218 (276)
Q Consensus       150 ~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~-----~~~~~~~--~~~~~~i~~~~~~~~~  218 (276)
                      ..+.+++..++.   ..+..+.++..|+.++..+ |+.|+.|+++.-...     +.....+  --...+-.+++|+.+|
T Consensus       182 a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg  261 (405)
T KOG1273|consen  182 AETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG  261 (405)
T ss_pred             cchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCc
Confidence            999999888743   4577889999998888777 999999998742110     0000111  1122355779999999


Q ss_pred             cEEEEeecC-CcEEEEECCCCcEEEEeecCCCCC-CceEEEEECCCCcEEEEecCCCCC
Q 023822          219 RLMLLTTME-GHIHVLDSFRGTLLSTYNVKPVSR-NSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       219 ~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      .|+++++.. ..++||....|.+++.+.   |.+ ....++.|+|-...+++- ..|.|
T Consensus       262 eYv~a~s~~aHaLYIWE~~~GsLVKILh---G~kgE~l~DV~whp~rp~i~si-~sg~v  316 (405)
T KOG1273|consen  262 EYVCAGSARAHALYIWEKSIGSLVKILH---GTKGEELLDVNWHPVRPIIASI-ASGVV  316 (405)
T ss_pred             cEEEeccccceeEEEEecCCcceeeeec---CCchhheeecccccceeeeeec-cCCce
Confidence            999888743 569999999999999998   555 567889999988877776 55554

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=7.4e-26  Score=172.96  Aligned_cols=239  Identities=17%  Similarity=0.308  Sum_probs=191.6

Q ss_pred             CCcEEEEEEcCCCCEEEEeecCCeEEEEEccC--CeeeeeeeeeeeceEEEEEeccCC-eEEEeccCCCCCceEEEEccC
Q 023822           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTA--ATCLKTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDESLRLLSLHD  110 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~d~~i~~~d~~~  110 (276)
                      .++|+++.|+|....|++++.|++++||.++.  ...++.+.....+|.+.+|.|+|. .+++++.   ...++.||+.+
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r---rky~ysyDle~  289 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGR---RKYLYSYDLET  289 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEeccc---ceEEEEeeccc
Confidence            47899999999999999999999999998863  345666666778999999999999 7777777   88999999987


Q ss_pred             Cceee-------------e-----------ecc--------------------cCcceEEEEeccCCCEEEEeeCCCeEE
Q 023822          111 NKYLR-------------Y-----------FKG--------------------HHDRVVSLSLCSSKDCFISGSLDRTVL  146 (276)
Q Consensus       111 ~~~~~-------------~-----------~~~--------------------~~~~i~~~~~~~~~~~l~~~~~d~~i~  146 (276)
                      .+...             .           +.+                    -.+.|..++|+.+++.|++++.+|.|.
T Consensus       290 ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~  369 (514)
T KOG2055|consen  290 AKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVY  369 (514)
T ss_pred             cccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEE
Confidence            54211             1           111                    134578899999999999999999999


Q ss_pred             EEeccCceeeeeEeec-CC--CeeEecCCCcEEEEee-CCeEEEEecccCC--CCCeeeeeecCCCCCceEEEECCCCcE
Q 023822          147 LWDQRAEKCQGLLRVQ-GR--PAAAYDDQGLVFAVAF-GGYIRMFDARKYE--KGPFDIFSVGGDISDANVVKFSNDGRL  220 (276)
Q Consensus       147 iwd~~~~~~~~~~~~~-~~--~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~  220 (276)
                      +||++...+++.+... .+  ..++.++++.++|+|+ .|.|.|||..+..  ..|..+..+..-...|++++|+|+++.
T Consensus       370 v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qi  449 (514)
T KOG2055|consen  370 VWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQI  449 (514)
T ss_pred             EEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhh
Confidence            9999999999888433 33  3678889999999999 5999999965432  223345555566678999999999999


Q ss_pred             EEEeec--CCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          221 MLLTTM--EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       221 l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      ||.+|.  +..+++-.+.+......+......-+.|++++|||.|-+||.|.++|-|
T Consensus       450 LAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv  506 (514)
T KOG2055|consen  450 LAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRV  506 (514)
T ss_pred             hhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCce
Confidence            988874  6789999998888777776443455779999999999999999998865

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=9.7e-26  Score=185.20  Aligned_cols=227  Identities=15%  Similarity=0.200  Sum_probs=187.7

Q ss_pred             CCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCc
Q 023822           33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK  112 (276)
Q Consensus        33 h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~  112 (276)
                      +...|.+++..  +++|++|+.+++|.+|.+.+++.-..+....-++.+++++.+|++++.|+.   |-.|++.+..+..
T Consensus        55 ~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsd---D~~vK~~~~~D~s  129 (933)
T KOG1274|consen   55 SGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSD---DTAVKLLNLDDSS  129 (933)
T ss_pred             cCceeEEEeec--ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecC---ceeEEEEeccccc
Confidence            67778777765  459999999999999999988877677777789999999999999999998   9999999999999


Q ss_pred             eeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe----------ecCCCeeEecCC-CcEEEEeeC
Q 023822          113 YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR----------VQGRPAAAYDDQ-GLVFAVAFG  181 (276)
Q Consensus       113 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----------~~~~~~~~~~~~-~~~l~~~~d  181 (276)
                      ....+++|.++|.++.|+|++++||+.+-||.|++||+.++.+...+.          ......++|+|+ |.+++.+.|
T Consensus       130 ~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d  209 (933)
T KOG1274|consen  130 QEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVD  209 (933)
T ss_pred             hheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccC
Confidence            999999999999999999999999999999999999999988776661          112346899999 577777789


Q ss_pred             CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECC
Q 023822          182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP  261 (276)
Q Consensus       182 ~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~  261 (276)
                      +.|++|+.......  .......+...+..++|+|+|+|||+++.||.|.|||.++-..    .   .....|.+++|.|
T Consensus       210 ~~Vkvy~r~~we~~--f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~---~~~~~Vc~~aw~p  280 (933)
T KOG1274|consen  210 NTVKVYSRKGWELQ--FKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----H---EFKRAVCCEAWKP  280 (933)
T ss_pred             CeEEEEccCCceeh--eeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----c---cccceeEEEecCC
Confidence            99999999887641  1222233444599999999999999999999999999987222    1   2567899999999


Q ss_pred             CCcEEEEecCCC
Q 023822          262 EGMFVISGRVSP  273 (276)
Q Consensus       262 ~g~~l~~~~~dg  273 (276)
                      ++..+-.-...|
T Consensus       281 ~~n~it~~~~~g  292 (933)
T KOG1274|consen  281 NANAITLITALG  292 (933)
T ss_pred             CCCeeEEEeecc
Confidence            987654443333

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=2.9e-26  Score=183.03  Aligned_cols=238  Identities=15%  Similarity=0.216  Sum_probs=197.8

Q ss_pred             hccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeee--eeeeeeeeceEE-EEEec-cCCeEEEeccC
Q 023822           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL--KTINSKKYGVDL-VCFTS-HPTTVIYSSKN   97 (276)
Q Consensus        22 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~v~~-~~~~~-~~~~l~~~~~~   97 (276)
                      ..++..+.+.+|+..|..+++.+. ..++++|+||++++|+-...+.+  ..+..|.+-+.. +++.+ ++-.+++++. 
T Consensus         2 ~~Y~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~-   79 (745)
T KOG0301|consen    2 PQYKLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGM-   79 (745)
T ss_pred             CcceeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecc-
Confidence            346677889999999999988764 48999999999999997655433  335556655555 67765 4456888888 


Q ss_pred             CCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecCCCeeEecCCCcEEE
Q 023822           98 GWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFA  177 (276)
Q Consensus        98 ~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~  177 (276)
                        |..|.+|...+..+...+++|...|.+++...++. +++|+.|.++++|-.........-|...+..++.-|++.+++
T Consensus        80 --D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~~~vT  156 (745)
T KOG0301|consen   80 --DTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPENTYVT  156 (745)
T ss_pred             --cceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhhcccCCcchheeeeeecCCCcEEe
Confidence              99999999999999999999999999999877776 999999999999986654433333666778888999998888


Q ss_pred             EeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEE
Q 023822          178 VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA  257 (276)
Q Consensus       178 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~  257 (276)
                      ++.|.+|++|.-.+  .    ...+.+|...|..+++-|++. +++++.||.|++|++ +|+.+.++.   +|...|.++
T Consensus       157 gsaDKtIklWk~~~--~----l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~---ghtn~vYsi  225 (745)
T KOG0301|consen  157 GSADKTIKLWKGGT--L----LKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMH---GHTNFVYSI  225 (745)
T ss_pred             ccCcceeeeccCCc--h----hhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeee---ccceEEEEE
Confidence            88899999998643  2    556778999999999998865 789999999999998 888988888   899999999


Q ss_pred             EECCCCcEEEEecCCCCC
Q 023822          258 SFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       258 ~~s~~g~~l~~~~~dg~v  275 (276)
                      +..+++..++++++|+++
T Consensus       226 s~~~~~~~Ivs~gEDrtl  243 (745)
T KOG0301|consen  226 SMALSDGLIVSTGEDRTL  243 (745)
T ss_pred             EecCCCCeEEEecCCceE
Confidence            988899999999999985

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.95  E-value=4.8e-25  Score=179.46  Aligned_cols=246  Identities=15%  Similarity=0.247  Sum_probs=196.7

Q ss_pred             hccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCC
Q 023822           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE  101 (276)
Q Consensus        22 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~  101 (276)
                      ++-+.+.+++++...|+++.-+|-=..+|.|..+|+|.+++++.++.+..++...++|+.++|.-||..+++.+..  .|
T Consensus       190 rt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~--~G  267 (910)
T KOG1539|consen  190 RTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRS--NG  267 (910)
T ss_pred             ccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccC--Cc
Confidence            3456778899999999999999988899999999999999999999999998877999999999999877666552  68


Q ss_pred             ceEEEEccCCceeeeec-c-------------------------------------------------------------
Q 023822          102 SLRLLSLHDNKYLRYFK-G-------------------------------------------------------------  119 (276)
Q Consensus       102 ~i~~~d~~~~~~~~~~~-~-------------------------------------------------------------  119 (276)
                      .+.+||++..+....+. .                                                             
T Consensus       268 ~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g  347 (910)
T KOG1539|consen  268 DMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQG  347 (910)
T ss_pred             eEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCc
Confidence            89999887532111100 0                                                             


Q ss_pred             --------------------------------------------------------------------------------
Q 023822          120 --------------------------------------------------------------------------------  119 (276)
Q Consensus       120 --------------------------------------------------------------------------------  119 (276)
                                                                                                      
T Consensus       348 ~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW  427 (910)
T KOG1539|consen  348 HFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTW  427 (910)
T ss_pred             EEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEE
Confidence                                                                                            


Q ss_pred             -------------cC------cceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE-----eecCCCeeEecCCCcE
Q 023822          120 -------------HH------DRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-----RVQGRPAAAYDDQGLV  175 (276)
Q Consensus       120 -------------~~------~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~  175 (276)
                                   +.      ..+++++.++-|++.+.|...|.|-+|++.++-....+     +..++..++.+.-++.
T Consensus       428 ~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~  507 (910)
T KOG1539|consen  428 NFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRL  507 (910)
T ss_pred             eccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCce
Confidence                         11      23566777777777777888888888888887766666     4556778888888877


Q ss_pred             EEEee-CCeEEEEecccCCCC---------C-----------------e-----------eeeeecCCCCCceEEEECCC
Q 023822          176 FAVAF-GGYIRMFDARKYEKG---------P-----------------F-----------DIFSVGGDISDANVVKFSND  217 (276)
Q Consensus       176 l~~~~-d~~i~~~d~~~~~~~---------~-----------------~-----------~~~~~~~~~~~i~~~~~~~~  217 (276)
                      +++++ +|.+.+||.......         .                 +           ....+.+|...|++++||||
T Consensus       508 ~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~D  587 (910)
T KOG1539|consen  508 LVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPD  587 (910)
T ss_pred             EEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCC
Confidence            77666 999999998764310         0                 0           01234568899999999999


Q ss_pred             CcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCC
Q 023822          218 GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       218 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  273 (276)
                      |++|++++.|++|++||+.++.++..+.    ...++.++.|+|+|.+||+...|.
T Consensus       588 grWlisasmD~tIr~wDlpt~~lID~~~----vd~~~~sls~SPngD~LAT~Hvd~  639 (910)
T KOG1539|consen  588 GRWLISASMDSTIRTWDLPTGTLIDGLL----VDSPCTSLSFSPNGDFLATVHVDQ  639 (910)
T ss_pred             CcEEEEeecCCcEEEEeccCcceeeeEe----cCCcceeeEECCCCCEEEEEEecC
Confidence            9999999999999999999999999987    678999999999999999998774

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=4.2e-27  Score=189.94  Aligned_cols=211  Identities=14%  Similarity=0.225  Sum_probs=172.6

Q ss_pred             ccceeeccCCCcEEEEEEcC-CCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEecc-CCeEEEeccCCCCCc
Q 023822           25 EVGMSFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH-PTTVIYSSKNGWDES  102 (276)
Q Consensus        25 ~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~d~~  102 (276)
                      +....|..|...++++.|++ ..++|++|+.||+|++||+...+...++.+....|.++.|+|. +..++++..   .|.
T Consensus       124 k~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~d---sG~  200 (839)
T KOG0269|consen  124 KLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHD---SGY  200 (839)
T ss_pred             hhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecC---Cce
Confidence            33456889999999999998 5678999999999999999998888888888889999999995 456667766   899


Q ss_pred             eEEEEccCC-ceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeee--eE-eecCCCeeEecCCCc-EEE
Q 023822          103 LRLLSLHDN-KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG--LL-RVQGRPAAAYDDQGL-VFA  177 (276)
Q Consensus       103 i~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~-~~~~~~~~~~~~~~~-~l~  177 (276)
                      +++||++.. ++...+..|.++|.|+.|+|++.+||+|++|++|+|||+.+.+...  ++ ...++..+.|-|... .|+
T Consensus       201 lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLA  280 (839)
T KOG0269|consen  201 LQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLA  280 (839)
T ss_pred             EEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhh
Confidence            999999876 4566788999999999999999999999999999999998665433  33 455677999999774 444


Q ss_pred             Eee---CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECC-CCcEEEEeecCCcEEEEECCCCcEE
Q 023822          178 VAF---GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGTLL  241 (276)
Q Consensus       178 ~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~  241 (276)
                      +++   |-.|+|||++..-   +....+..|...++.++|.. +-..|.+++.||.|..-.++++...
T Consensus       281 tcsmv~dtsV~VWDvrRPY---IP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~p  345 (839)
T KOG0269|consen  281 TCSMVVDTSVHVWDVRRPY---IPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATTP  345 (839)
T ss_pred             hhhccccceEEEEeecccc---ccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcccCh
Confidence            444   8999999999643   34566778989999999976 4467889999998877666655443

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=2.9e-25  Score=176.92  Aligned_cols=236  Identities=15%  Similarity=0.170  Sum_probs=191.6

Q ss_pred             cCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCee-eeeeeee-eeceEEEEEeccCCeEEEeccCCCCCceEEEEcc
Q 023822           32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATC-LKTINSK-KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH  109 (276)
Q Consensus        32 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~  109 (276)
                      --..+|.++||+.+.+.||.+-.||.|-+|++..+-. ...+.++ +..|..++|++.+ .|++.+.   +|.|.-||+.
T Consensus        23 ~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~g~---sg~i~EwDl~   98 (691)
T KOG2048|consen   23 YKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-RLFSSGL---SGSITEWDLH   98 (691)
T ss_pred             eeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-eEEeecC---CceEEEEecc
Confidence            3468899999999999999999999999999987533 3334443 4679999999554 5555555   9999999999


Q ss_pred             CCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE----eecCCCeeEecCCCcEEEEee-CCeE
Q 023822          110 DNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL----RVQGRPAAAYDDQGLVFAVAF-GGYI  184 (276)
Q Consensus       110 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~-d~~i  184 (276)
                      +.++...+....+.|++++.+|.+..++.|+.||.+..++...++.....    ....+-++.|+|++..+++|+ ||.|
T Consensus        99 ~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~I  178 (691)
T KOG2048|consen   99 TLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVI  178 (691)
T ss_pred             cCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceE
Confidence            99999999999999999999999999999999998888887777665544    335677999999999777777 9999


Q ss_pred             EEEecccCCCCCeeeeeecC----CCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEEC
Q 023822          185 RMFDARKYEKGPFDIFSVGG----DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS  260 (276)
Q Consensus       185 ~~~d~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s  260 (276)
                      ++||...+.........+..    ...-|.++.|-.++ .|++|...|.|.+||...+.+++.+.   .|.+.|.+++-.
T Consensus       179 riwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~---~h~adVl~Lav~  254 (691)
T KOG2048|consen  179 RIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHS---CHDADVLALAVA  254 (691)
T ss_pred             EEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhh---hhhcceeEEEEc
Confidence            99999986642211111111    23346777777665 58999999999999999999999998   689999999999


Q ss_pred             CCCcEEEEecCCCCC
Q 023822          261 PEGMFVISGRVSPFS  275 (276)
Q Consensus       261 ~~g~~l~~~~~dg~v  275 (276)
                      +++.++++++.|+.+
T Consensus       255 ~~~d~vfsaGvd~~i  269 (691)
T KOG2048|consen  255 DNEDRVFSAGVDPKI  269 (691)
T ss_pred             CCCCeEEEccCCCce
Confidence            999999999999865

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=9.3e-28  Score=192.38  Aligned_cols=196  Identities=20%  Similarity=0.291  Sum_probs=177.0

Q ss_pred             cceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEE
Q 023822           26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL  105 (276)
Q Consensus        26 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~  105 (276)
                      ....|.+|..+|.|+.|+++..+|++|+.+|+|++||++.++.++++.+|...+..+.|+|-+.+.+.++.   |..+++
T Consensus        62 ~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gSt---dtd~~i  138 (825)
T KOG0267|consen   62 AITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGST---DTDLKI  138 (825)
T ss_pred             hhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccc---ccccee
Confidence            33458999999999999999999999999999999999999999999999999999999999999988888   999999


Q ss_pred             EEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-CC
Q 023822          106 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-GG  182 (276)
Q Consensus       106 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d~  182 (276)
                      ||++...+...+.+|...+..+.|+|+|++++.++.|..+++||+..++....+  |...+..+.|+|..-+++.++ |+
T Consensus       139 wD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~  218 (825)
T KOG0267|consen  139 WDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDR  218 (825)
T ss_pred             hhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCc
Confidence            999988899999999999999999999999999999999999999999999888  556677888999999998888 99


Q ss_pred             eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCC
Q 023822          183 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG  228 (276)
Q Consensus       183 ~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  228 (276)
                      ++++||+++.+.    +.........|.+.+|+|++..+++|....
T Consensus       219 tv~f~dletfe~----I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  219 TVRFWDLETFEV----ISSGKPETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             eeeeeccceeEE----eeccCCccCCceeeeecCCceeeecCchhh
Confidence            999999997553    444455567899999999999888876543

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.95  E-value=9.2e-26  Score=177.66  Aligned_cols=244  Identities=15%  Similarity=0.238  Sum_probs=179.0

Q ss_pred             ceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCC-----------------
Q 023822           27 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT-----------------   89 (276)
Q Consensus        27 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-----------------   89 (276)
                      ...++||++.|.|+...|.|.+|++|+.||+|+||.+.+|+++..+... +.|.+++|+|.+.                 
T Consensus       393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d-~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp  471 (733)
T KOG0650|consen  393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD-SEIRSVAWNPLSDLCVLAVAVGECVLIVNP  471 (733)
T ss_pred             eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec-ceeEEEEecCCCCceeEEEEecCceEEeCc
Confidence            4557899999999999999999999999999999999999988876543 3566666666544                 


Q ss_pred             ---------------------------------------------------------------eEEEeccCCCCCceEEE
Q 023822           90 ---------------------------------------------------------------TVIYSSKNGWDESLRLL  106 (276)
Q Consensus        90 ---------------------------------------------------------------~l~~~~~~~~d~~i~~~  106 (276)
                                                                                     +|++....+....|.|+
T Consensus       472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliH  551 (733)
T KOG0650|consen  472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIH  551 (733)
T ss_pred             cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEE
Confidence                                                                           22222221112233333


Q ss_pred             EccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-CCe
Q 023822          107 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-GGY  183 (276)
Q Consensus       107 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d~~  183 (276)
                      ++...+....|+...+.|.++.|+|...+|++++. ..|++||+.....++.+  ....+..++++|.|.-+++++ |+.
T Consensus       552 QLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k  630 (733)
T KOG0650|consen  552 QLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKK  630 (733)
T ss_pred             ecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCe
Confidence            33333323333344567899999999999888885 57999999988877776  334477899999886555555 999


Q ss_pred             EEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECC------CCcEEEEeecCCCCCCc----
Q 023822          184 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF------RGTLLSTYNVKPVSRNS----  253 (276)
Q Consensus       184 i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~------~~~~~~~~~~~~~~~~~----  253 (276)
                      +..||+.-..+ +  ...+..|...+++++|++.-.++++|+.||.+.|+.-.      ..-++-.++..++|...    
T Consensus       631 ~~WfDldlssk-P--yk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~g  707 (733)
T KOG0650|consen  631 MCWFDLDLSSK-P--YKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLG  707 (733)
T ss_pred             eEEEEcccCcc-h--hHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccc
Confidence            99999986543 2  44556788899999999999999999999999998522      22222222222256554    


Q ss_pred             eEEEEECCCCcEEEEecCCCCC
Q 023822          254 TLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       254 v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      |.++.|+|...+|++++.||++
T Consensus       708 VLd~~wHP~qpWLfsAGAd~ti  729 (733)
T KOG0650|consen  708 VLDTIWHPRQPWLFSAGADGTI  729 (733)
T ss_pred             eEeecccCCCceEEecCCCceE
Confidence            8899999999999999999985

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.94  E-value=2.8e-25  Score=161.20  Aligned_cols=207  Identities=21%  Similarity=0.291  Sum_probs=166.1

Q ss_pred             eccCCCcEEEEEEcC-CCCEEEEeecCCeEEEEEccCCe----------eee-----eeeeeeeceEEEEEeccCCeEEE
Q 023822           30 FRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAAT----------CLK-----TINSKKYGVDLVCFTSHPTTVIY   93 (276)
Q Consensus        30 ~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~----------~~~-----~~~~~~~~v~~~~~~~~~~~l~~   93 (276)
                      .+.|.+.|+++...+ .|+++++|+.||.|.+||+++..          .+.     .-..|+..|..+.|-|-..-+++
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt  118 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT  118 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence            356899999999988 78999999999999999997542          011     11357788999999996665555


Q ss_pred             eccCCCCCceEEEEccCCceeeeecccCcceEEEEeccC---CCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeE
Q 023822           94 SSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSS---KDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAA  168 (276)
Q Consensus        94 ~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~  168 (276)
                      .+.  +|.++++||.++-+....++ -++.|.+-+++|-   ..++|+|..|-.|++.|+.++...+.+  |..++..+.
T Consensus       119 ssS--FDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~  195 (397)
T KOG4283|consen  119 SSS--FDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE  195 (397)
T ss_pred             ccc--ccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE
Confidence            543  39999999999988877776 5677888888883   347888999999999999999999998  667788999


Q ss_pred             ecCCCcEE-EEee-CCeEEEEecccCC------------CCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEE
Q 023822          169 YDDQGLVF-AVAF-GGYIRMFDARKYE------------KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD  234 (276)
Q Consensus       169 ~~~~~~~l-~~~~-d~~i~~~d~~~~~------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  234 (276)
                      |+|...++ ++++ ||.|++||++...            ..+. ......|.+.++.++|+.+|.++++.+.|..+++|+
T Consensus       196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~-~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn  274 (397)
T KOG4283|consen  196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPI-LKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWN  274 (397)
T ss_pred             eccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcc-ccccccccceeeeeeecccchhhhhccCccceEEee
Confidence            99988654 4444 9999999998642            1111 123456778899999999999999999999999999


Q ss_pred             CCCCcE
Q 023822          235 SFRGTL  240 (276)
Q Consensus       235 ~~~~~~  240 (276)
                      ..+|+.
T Consensus       275 ~~~G~n  280 (397)
T KOG4283|consen  275 MESGRN  280 (397)
T ss_pred             cccCcc
Confidence            887653

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.94  E-value=5.3e-26  Score=175.81  Aligned_cols=230  Identities=10%  Similarity=0.166  Sum_probs=187.9

Q ss_pred             cCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCC---eeeeeeee--eeeceEEEEEeccCCeEEEeccCCCCCceEEE
Q 023822           32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA---TCLKTINS--KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL  106 (276)
Q Consensus        32 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~  106 (276)
                      .|..-|.++..+...+.++||+. |.|+|||+...   .++..+..  ....+..+...||++.|++++.   -.++.||
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGe---astlsiW  492 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGE---ASTLSIW  492 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccc---cceeeee
Confidence            58888889999998999999986 78999999743   23333433  3467999999999999999998   8999999


Q ss_pred             EccCCcee--eeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-C
Q 023822          107 SLHDNKYL--RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-G  181 (276)
Q Consensus       107 d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d  181 (276)
                      |+....+.  ..+....-....++.+||.+..+++..||.|.|||+.+...++.+  +..+..|+.++++|..|-+|. |
T Consensus       493 DLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlD  572 (705)
T KOG0639|consen  493 DLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLD  572 (705)
T ss_pred             eccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCc
Confidence            99876543  233333345778999999999999999999999999999999998  677899999999998777777 9


Q ss_pred             CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECC
Q 023822          182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP  261 (276)
Q Consensus       182 ~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~  261 (276)
                      ++++.||++.++....  +   .-.+.|.++..+|++.+|++|-+++.+.|.... +.....+.   .|++-|.++.|.+
T Consensus       573 ntvRcWDlregrqlqq--h---dF~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlh---lheScVLSlKFa~  643 (705)
T KOG0639|consen  573 NTVRCWDLREGRQLQQ--H---DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLH---LHESCVLSLKFAY  643 (705)
T ss_pred             cceeehhhhhhhhhhh--h---hhhhhheecccCCCccceeeecccCcEEEEecC-Cccceeec---ccccEEEEEEecc
Confidence            9999999998764211  1   123578999999999999999999999998864 44444444   4899999999999


Q ss_pred             CCcEEEEecCCCC
Q 023822          262 EGMFVISGRVSPF  274 (276)
Q Consensus       262 ~g~~l~~~~~dg~  274 (276)
                      .|+++++.+.|.+
T Consensus       644 cGkwfvStGkDnl  656 (705)
T KOG0639|consen  644 CGKWFVSTGKDNL  656 (705)
T ss_pred             cCceeeecCchhh
Confidence            9999999999875

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.94  E-value=1.9e-24  Score=167.19  Aligned_cols=223  Identities=19%  Similarity=0.285  Sum_probs=178.5

Q ss_pred             CcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCc--
Q 023822           35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK--  112 (276)
Q Consensus        35 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~--  112 (276)
                      .-|.|++|.++|+ ++||..+|.|.||+..+.+..+....|++.|.+++...+|..+- ++.   |+.|..||-.-.+  
T Consensus       247 k~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgK---DRki~~Wd~~y~k~r  321 (626)
T KOG2106|consen  247 KFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGK---DRKIILWDDNYRKLR  321 (626)
T ss_pred             eEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCc---cceEEeccccccccc
Confidence            5699999999886 77999999999999988888877779999999999998887665 777   9999999832110  


Q ss_pred             ---------e-----------------------------eeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCce
Q 023822          113 ---------Y-----------------------------LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK  154 (276)
Q Consensus       113 ---------~-----------------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  154 (276)
                               .                             .....+|......++.+|+.+++++++.|+.+++|+  ..+
T Consensus       322 ~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k  399 (626)
T KOG2106|consen  322 ETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHK  399 (626)
T ss_pred             cccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCc
Confidence                     0                             011246777889999999999999999999999999  333


Q ss_pred             eee-eEeecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEE
Q 023822          155 CQG-LLRVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHV  232 (276)
Q Consensus       155 ~~~-~~~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  232 (276)
                      +.- .+-..+..++.|+|.| .++.++ .|...+.|.++..     .........+++.++|+|+|.+||.|+.|+.|+|
T Consensus       400 ~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~-----lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyi  473 (626)
T KOG2106|consen  400 LEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQD-----LVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYI  473 (626)
T ss_pred             eeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccce-----eEEEEecCCceEEEEEcCCCCEEEEecCCCeEEE
Confidence            333 3356677899999999 666666 8999999998833     3333334789999999999999999999999999


Q ss_pred             EECCCC-cEEEEeecCCCCCCceEEEEECCCCcEEEEecCC
Q 023822          233 LDSFRG-TLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVS  272 (276)
Q Consensus       233 ~d~~~~-~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  272 (276)
                      |.+... .........  +..+|+.+.||+|+++|.+-+.|
T Consensus       474 y~Vs~~g~~y~r~~k~--~gs~ithLDwS~Ds~~~~~~S~d  512 (626)
T KOG2106|consen  474 YRVSANGRKYSRVGKC--SGSPITHLDWSSDSQFLVSNSGD  512 (626)
T ss_pred             EEECCCCcEEEEeeee--cCceeEEeeecCCCceEEeccCc
Confidence            998654 444444433  34899999999999999987765

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.94  E-value=3.7e-25  Score=166.65  Aligned_cols=265  Identities=14%  Similarity=0.175  Sum_probs=196.7

Q ss_pred             cccCcccceeeeeehHHHh--hccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEcc--------C-------
Q 023822            3 GSQSEREDKVSLELSEEIL--QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVT--------A-------   65 (276)
Q Consensus         3 g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~--------~-------   65 (276)
                      |+.+.+...+.+...+...  .+.+....|..|...|+++.|+|+|+.||+|+.+|.|.+|...        +       
T Consensus        32 ~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke  111 (434)
T KOG1009|consen   32 AGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKE  111 (434)
T ss_pred             ccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCcc
Confidence            4445555555554443333  3667778899999999999999999999999999999999865        2       


Q ss_pred             -CeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCe
Q 023822           66 -ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRT  144 (276)
Q Consensus        66 -~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  144 (276)
                       ......+.+|...+..++|+|++.++++++.   |..+++||+..+.....+..|...+..++|.|-++++++-+.|..
T Consensus       112 ~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~---dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~  188 (434)
T KOG1009|consen  112 KWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSV---DNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRH  188 (434)
T ss_pred             ceEEEEEecccccchhhhhccCCCceeeeeec---cceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcc
Confidence             2234556778899999999999999999998   999999999999999999999999999999999999999998887


Q ss_pred             EEEEeccCceeeeeE---------------------eecC----CCeeEecCCCcEEEEee-----CCe-----EEEEec
Q 023822          145 VLLWDQRAEKCQGLL---------------------RVQG----RPAAAYDDQGLVFAVAF-----GGY-----IRMFDA  189 (276)
Q Consensus       145 i~iwd~~~~~~~~~~---------------------~~~~----~~~~~~~~~~~~l~~~~-----d~~-----i~~~d~  189 (276)
                      .+.+.+...+.++..                     +...    ...++|+|+|.+++...     ++.     .++|+-
T Consensus       189 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsr  268 (434)
T KOG1009|consen  189 PEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSR  268 (434)
T ss_pred             cceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecc
Confidence            777766543322221                     1111    12578889998887654     233     355554


Q ss_pred             ccCCCCCeeeeeecCCCCCceEEEECC------------------CCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCC
Q 023822          190 RKYEKGPFDIFSVGGDISDANVVKFSN------------------DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR  251 (276)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~i~~~~~~~------------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  251 (276)
                      ...+.   ....++....+...+.|+|                  -+-.+|.++ .+.|++||.++-.++.....  -|-
T Consensus       269 k~l~r---P~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~n--ihy  342 (434)
T KOG1009|consen  269 KDLKR---PAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDN--IHY  342 (434)
T ss_pred             ccccC---ceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccceEEEee--eee
Confidence            43222   1333334444445555544                  222344444 45799999999888887765  478


Q ss_pred             CceEEEEECCCCcEEEEecCCCCCC
Q 023822          252 NSTLEASFSPEGMFVISGRVSPFSS  276 (276)
Q Consensus       252 ~~v~~~~~s~~g~~l~~~~~dg~vs  276 (276)
                      ..+++++|++||..|+..|.||+.|
T Consensus       343 ~~iTDiaws~dg~~l~vSS~DGyCS  367 (434)
T KOG1009|consen  343 SAITDIAWSDDGSVLLVSSTDGFCS  367 (434)
T ss_pred             eeecceeecCCCcEEEEeccCCceE
Confidence            8999999999999999999999865

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=5.4e-26  Score=182.58  Aligned_cols=236  Identities=12%  Similarity=0.146  Sum_probs=196.3

Q ss_pred             CCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEec---cCCeEEEeccCCCCCceEEEEcc
Q 023822           33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTS---HPTTVIYSSKNGWDESLRLLSLH  109 (276)
Q Consensus        33 h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~~~~d~~i~~~d~~  109 (276)
                      ....+.+++.+|+|++||+|..-|+++||++.+-+....+..|+..|.|+.++.   ..+.|++++.   |..|.+||+.
T Consensus       458 ~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasr---dRlIHV~Dv~  534 (1080)
T KOG1408|consen  458 SRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASR---DRLIHVYDVK  534 (1080)
T ss_pred             cccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccC---CceEEEEecc
Confidence            356799999999999999999999999999999999999999999999999985   3467888888   9999999986


Q ss_pred             CC-ceeeeecccCcceEEEEeccCC--CEEEEeeCCCeEEEEeccCceeee-------eEeecCCCeeEecCCCcEEEEe
Q 023822          110 DN-KYLRYFKGHHDRVVSLSLCSSK--DCFISGSLDRTVLLWDQRAEKCQG-------LLRVQGRPAAAYDDQGLVFAVA  179 (276)
Q Consensus       110 ~~-~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~  179 (276)
                      .. .+++++.+|...|+++.|...|  ..+++++.|..|.+--.+......       ++.......++..|..++++++
T Consensus       535 rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~  614 (1080)
T KOG1408|consen  535 RNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTV  614 (1080)
T ss_pred             cccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEE
Confidence            54 5678899999999999998877  588999999877543333111111       1123345688999998888777


Q ss_pred             e-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEE
Q 023822          180 F-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS  258 (276)
Q Consensus       180 ~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~  258 (276)
                      . |..|++||+++++.... ......|.+....+...|.|.|+++...|.++.++|..+|+++.+..   +|...|+.+.
T Consensus       615 cQDrnirif~i~sgKq~k~-FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~---GHsE~VTG~k  690 (1080)
T KOG1408|consen  615 CQDRNIRIFDIESGKQVKS-FKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT---GHSEAVTGVK  690 (1080)
T ss_pred             ecccceEEEeccccceeee-ecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc---Ccchheeeee
Confidence            7 99999999999875221 11233466778889999999999999999999999999999999999   8999999999


Q ss_pred             ECCCCcEEEEecCCCCC
Q 023822          259 FSPEGMFVISGRVSPFS  275 (276)
Q Consensus       259 ~s~~g~~l~~~~~dg~v  275 (276)
                      |.+|-+.|++.+.||.+
T Consensus       691 F~nDCkHlISvsgDgCI  707 (1080)
T KOG1408|consen  691 FLNDCKHLISVSGDGCI  707 (1080)
T ss_pred             ecccchhheeecCCceE
Confidence            99999999999999864

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.94  E-value=9.1e-25  Score=164.15  Aligned_cols=207  Identities=13%  Similarity=0.206  Sum_probs=170.8

Q ss_pred             eeeccCCCcEEEEEEcC-CCCEEEEeecCCeEEEEEccCC-------eeeeeeeeeeeceEEEEEeccCC-eEEEeccCC
Q 023822           28 MSFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAA-------TCLKTINSKKYGVDLVCFTSHPT-TVIYSSKNG   98 (276)
Q Consensus        28 ~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~   98 (276)
                      -.+.||+++|..++|+| +.+.+|+||+|.+|.||.+..+       +++..+.+|...|..++|+|... .|++++.  
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~--  152 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS--  152 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccC--
Confidence            34679999999999999 6778999999999999998754       45677889999999999999765 4566665  


Q ss_pred             CCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE---eecCCCeeEecCCCcE
Q 023822           99 WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL---RVQGRPAAAYDDQGLV  175 (276)
Q Consensus        99 ~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~  175 (276)
                       |..|.+|++.+++.+.++. |.+.|.++.|+.+|.+|++.+.|.+|++||.++++.+..-   .......+.|-.++.+
T Consensus       153 -Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i  230 (472)
T KOG0303|consen  153 -DNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKI  230 (472)
T ss_pred             -CceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCce
Confidence             9999999999999988888 9999999999999999999999999999999999988776   2233456778888888


Q ss_pred             EEEee----CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEe-ecCCcEEEEECCCCcE
Q 023822          176 FAVAF----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTL  240 (276)
Q Consensus       176 l~~~~----d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~  240 (276)
                      +++|.    +.++.+||..+.+.+ .....+.. .+.|.---|.|+.+.++.+ -.|+.||-|.+.+..+
T Consensus       231 ~tTGfsr~seRq~aLwdp~nl~eP-~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P  298 (472)
T KOG0303|consen  231 FTTGFSRMSERQIALWDPNNLEEP-IALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP  298 (472)
T ss_pred             eeeccccccccceeccCcccccCc-ceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence            88887    689999999887753 44444443 3456666688888877655 4799999999877653

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.94  E-value=5.4e-25  Score=174.44  Aligned_cols=243  Identities=18%  Similarity=0.173  Sum_probs=178.0

Q ss_pred             eeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeee--eeeeeeceEEEEEeccCCe-EEEeccCCCCCceE
Q 023822           28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKT--INSKKYGVDLVCFTSHPTT-VIYSSKNGWDESLR  104 (276)
Q Consensus        28 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~-l~~~~~~~~d~~i~  104 (276)
                      .....|...|..+.|-|-...|++++.|.++++||++..++...  +.+|...|.+++|.|.+.. |++|+.   ||.|.
T Consensus        94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgR---Dg~il  170 (720)
T KOG0321|consen   94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGR---DGEIL  170 (720)
T ss_pred             cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccC---CCcEE
Confidence            45668999999999999777899999999999999999988776  8899999999999997654 566666   99999


Q ss_pred             EEEccCCc--------------------e-------eeeecccCcceEE---EEeccCCCEEEEeeC-CCeEEEEeccCc
Q 023822          105 LLSLHDNK--------------------Y-------LRYFKGHHDRVVS---LSLCSSKDCFISGSL-DRTVLLWDQRAE  153 (276)
Q Consensus       105 ~~d~~~~~--------------------~-------~~~~~~~~~~i~~---~~~~~~~~~l~~~~~-d~~i~iwd~~~~  153 (276)
                      |||++-..                    +       +...+.+...|.+   +.+..|...||+++. |+.|++||++..
T Consensus       171 lWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~  250 (720)
T KOG0321|consen  171 LWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKN  250 (720)
T ss_pred             EEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccc
Confidence            99986432                    0       1112234444554   555568888999888 999999999976


Q ss_pred             eeeeeE-------------eecCCCeeEecCCCcE-EEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCc
Q 023822          154 KCQGLL-------------RVQGRPAAAYDDQGLV-FAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR  219 (276)
Q Consensus       154 ~~~~~~-------------~~~~~~~~~~~~~~~~-l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  219 (276)
                      ......             ...++.++..+..|.+ +|.+.|+.|++|++......+...+.-.........-..+|++.
T Consensus       251 ~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~  330 (720)
T KOG0321|consen  251 YTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDC  330 (720)
T ss_pred             ccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCc
Confidence            544332             1223446666666654 45555999999999987665544433221112222335789999


Q ss_pred             EEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCC-cEEEEecCCCCC
Q 023822          220 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG-MFVISGRVSPFS  275 (276)
Q Consensus       220 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v  275 (276)
                      ++++|+.|...++|.+.+.+.--.+..  +|.-.|+.++|.|.. .-++++++|-.+
T Consensus       331 ~l~SgSsd~~ayiw~vs~~e~~~~~l~--Ght~eVt~V~w~pS~~t~v~TcSdD~~~  385 (720)
T KOG0321|consen  331 SLLSGSSDEQAYIWVVSSPEAPPALLL--GHTREVTTVRWLPSATTPVATCSDDFRV  385 (720)
T ss_pred             eEeccCCCcceeeeeecCccCChhhhh--CcceEEEEEeeccccCCCceeeccCcce
Confidence            999999999999999987765433322  799999999998854 346677777553

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=6.6e-25  Score=155.09  Aligned_cols=209  Identities=13%  Similarity=0.165  Sum_probs=166.2

Q ss_pred             cccceeeccCCCcEEEEEEcC--CCCEEEEeecCCeEEEEEccCCe--eeeeeeeeeeceEEEEEeccC--CeEEEeccC
Q 023822           24 MEVGMSFRDYNGRISSMDFHK--SSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHP--TTVIYSSKN   97 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~~   97 (276)
                      .++..+|.||.+||..++|..  -|.+||+++.||.|.||.-++++  .......|...|++++|.|.+  -.|++++. 
T Consensus        46 s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasS-  124 (299)
T KOG1332|consen   46 SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASS-  124 (299)
T ss_pred             ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeC-
Confidence            467788999999999999965  89999999999999999988774  344567889999999999975  45667776 


Q ss_pred             CCCCceEEEEccCC---ceeeeecccCcceEEEEeccC---C-----------CEEEEeeCCCeEEEEeccCceee--ee
Q 023822           98 GWDESLRLLSLHDN---KYLRYFKGHHDRVVSLSLCSS---K-----------DCFISGSLDRTVLLWDQRAEKCQ--GL  158 (276)
Q Consensus        98 ~~d~~i~~~d~~~~---~~~~~~~~~~~~i~~~~~~~~---~-----------~~l~~~~~d~~i~iwd~~~~~~~--~~  158 (276)
                        ||.|.+.+.+..   ........|.-.|++++|.|.   |           +.|++|+.|..|+||+..+.+-+  ..
T Consensus       125 --DG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~  202 (299)
T KOG1332|consen  125 --DGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERT  202 (299)
T ss_pred             --CCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhh
Confidence              999999998765   223455789999999999985   4           56999999999999999886322  22


Q ss_pred             E--eecCCCeeEecCCC----cEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEE
Q 023822          159 L--RVQGRPAAAYDDQG----LVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIH  231 (276)
Q Consensus       159 ~--~~~~~~~~~~~~~~----~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  231 (276)
                      +  |..-++.++|.|.-    ..+++++ ||++.+|..+ .+..+.....+..-...+..+.||+.|+.|++++.|+.|.
T Consensus       203 l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~-~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvt  281 (299)
T KOG1332|consen  203 LEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD-EEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVT  281 (299)
T ss_pred             hhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec-CccCcccccccccCCcceEEEEEeccccEEEEecCCcEEE
Confidence            3  56668899999864    4555555 9999999987 3333333344444566799999999999999999999999


Q ss_pred             EEECC
Q 023822          232 VLDSF  236 (276)
Q Consensus       232 i~d~~  236 (276)
                      +|.-.
T Consensus       282 lwke~  286 (299)
T KOG1332|consen  282 LWKEN  286 (299)
T ss_pred             EEEeC
Confidence            99743

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=7.4e-25  Score=167.65  Aligned_cols=219  Identities=15%  Similarity=0.178  Sum_probs=173.1

Q ss_pred             CEEEEee-cCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceE
Q 023822           47 SYLVTAS-DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV  125 (276)
Q Consensus        47 ~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~  125 (276)
                      .+++++. .-..+.+|.+...........-.+++.+++-+|.|.+++.++.   .+.|++|.+.+|+.+..+.+|-..|+
T Consensus        51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i---~g~lYlWelssG~LL~v~~aHYQ~IT  127 (476)
T KOG0646|consen   51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTI---SGNLYLWELSSGILLNVLSAHYQSIT  127 (476)
T ss_pred             hheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecc---cCcEEEEEeccccHHHHHHhhcccee
Confidence            4565554 3457889998766555544455678999999999999999877   99999999999999999999999999


Q ss_pred             EEEeccCCCEEEEeeCCCeEEEEecc---------CceeeeeEeec--CCCeeEecC---CCcEEEEeeCCeEEEEeccc
Q 023822          126 SLSLCSSKDCFISGSLDRTVLLWDQR---------AEKCQGLLRVQ--GRPAAAYDD---QGLVFAVAFGGYIRMFDARK  191 (276)
Q Consensus       126 ~~~~~~~~~~l~~~~~d~~i~iwd~~---------~~~~~~~~~~~--~~~~~~~~~---~~~~l~~~~d~~i~~~d~~~  191 (276)
                      ++.|+.|+.+|++|+.||.|.+|++-         +.++...+..+  .+..+...+   +.+++.++.|.++++||+..
T Consensus       128 cL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~  207 (476)
T KOG0646|consen  128 CLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL  207 (476)
T ss_pred             EEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc
Confidence            99999999999999999999999864         23445555333  345555544   34677777799999999998


Q ss_pred             CCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCc----------------EEEEeecCCCCCC--c
Q 023822          192 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT----------------LLSTYNVKPVSRN--S  253 (276)
Q Consensus       192 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----------------~~~~~~~~~~~~~--~  253 (276)
                      +..    +.. ...+..+.+++.+|-++.++.|+.+|.|.+.++....                .+..+.   +|.+  +
T Consensus       208 g~L----Llt-i~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~---Gh~~~~~  279 (476)
T KOG0646|consen  208 GVL----LLT-ITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLV---GHENESA  279 (476)
T ss_pred             cee----eEE-EecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeec---cccCCcc
Confidence            653    222 2345689999999999999999999999998865322                233344   5666  9


Q ss_pred             eEEEEECCCCcEEEEecCCCCCC
Q 023822          254 TLEASFSPEGMFVISGRVSPFSS  276 (276)
Q Consensus       254 v~~~~~s~~g~~l~~~~~dg~vs  276 (276)
                      |++++.+-||.+|++|++||.|+
T Consensus       280 ITcLais~DgtlLlSGd~dg~Vc  302 (476)
T KOG0646|consen  280 ITCLAISTDGTLLLSGDEDGKVC  302 (476)
T ss_pred             eeEEEEecCccEEEeeCCCCCEE
Confidence            99999999999999999999873

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.94  E-value=1.1e-24  Score=166.45  Aligned_cols=246  Identities=17%  Similarity=0.206  Sum_probs=185.3

Q ss_pred             ccccceeeccCCCcEEEEEEcCCC--CEEEEeecCCeEEEEEccCC----eeeeeeeeeeeceEEEEEeccC-CeEEEec
Q 023822           23 SMEVGMSFRDYNGRISSMDFHKSS--SYLVTASDDESIRLYDVTAA----TCLKTINSKKYGVDLVCFTSHP-TTVIYSS   95 (276)
Q Consensus        23 ~~~~~~~~~~h~~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~   95 (276)
                      .+......+-|.++|++++|+|..  +.+|+|..-|+|-+||+.+.    .-+..+..|..+|.++.|+|.+ ..+++.+
T Consensus       175 ~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS  254 (498)
T KOG4328|consen  175 DYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSS  254 (498)
T ss_pred             cceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeec
Confidence            344556667789999999999954  57889999999999999522    2345567889999999999955 5677777


Q ss_pred             cCCCCCceEEEEccCCce--eeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeee---eEeecCCCeeEec
Q 023822           96 KNGWDESLRLLSLHDNKY--LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG---LLRVQGRPAAAYD  170 (276)
Q Consensus        96 ~~~~d~~i~~~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---~~~~~~~~~~~~~  170 (276)
                      .   ||+|++-|++....  +..+..-...+.++.|+.+...++.+..=|...+||+++.....   .++...+..++++
T Consensus       255 y---DGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~N  331 (498)
T KOG4328|consen  255 Y---DGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALN  331 (498)
T ss_pred             c---CceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecC
Confidence            7   99999999987643  33333355667888999888888888888899999999876532   2366689999999


Q ss_pred             CCC-cEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECC----CCcEEEEe
Q 023822          171 DQG-LVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF----RGTLLSTY  244 (276)
Q Consensus       171 ~~~-~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~----~~~~~~~~  244 (276)
                      |.. .++++++ |++.++||+|............-.|...|.++.|||.+-.|++.+.|..|+|||..    ...++..+
T Consensus       332 P~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I  411 (498)
T KOG4328|consen  332 PVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTI  411 (498)
T ss_pred             CCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcccee
Confidence            976 4555555 99999999998765443345566788999999999988779999999999999973    33444444


Q ss_pred             ecCCCCC--CceEEEEECCCCcEEEEecC
Q 023822          245 NVKPVSR--NSTLEASFSPEGMFVISGRV  271 (276)
Q Consensus       245 ~~~~~~~--~~v~~~~~s~~g~~l~~~~~  271 (276)
                      .....+.  -......|.|+..++++|-.
T Consensus       412 ~Hn~~t~RwlT~fKA~W~P~~~li~vg~~  440 (498)
T KOG4328|consen  412 PHNNRTGRWLTPFKAAWDPDYNLIVVGRY  440 (498)
T ss_pred             eccCcccccccchhheeCCCccEEEEecc
Confidence            3111111  12455789999888888753

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.93  E-value=8.4e-25  Score=168.96  Aligned_cols=227  Identities=13%  Similarity=0.134  Sum_probs=181.5

Q ss_pred             cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i  103 (276)
                      ...+..+.+.  .-.|++......++++|+..+.|+|||+....+.+.++.|...|+++.++....+|++++.   .|.|
T Consensus        71 Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~---gGdi  145 (673)
T KOG4378|consen   71 VPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSD---GGDI  145 (673)
T ss_pred             cceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEecc---CCcE
Confidence            3444444443  3345555555689999999999999999977778888999999999999999999999998   8999


Q ss_pred             EEEEccCCceeeeeccc-CcceEEEEeccCCC-EEEEeeCCCeEEEEeccCceeeeeE---eecCCCeeEecCCCcEEE-
Q 023822          104 RLLSLHDNKYLRYFKGH-HDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLL---RVQGRPAAAYDDQGLVFA-  177 (276)
Q Consensus       104 ~~~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~l~-  177 (276)
                      .+..+.++.....+... ...|.-+.|+|..+ +|.+++.+|.|.+||+....++..+   |..+...++|+|.+..|. 
T Consensus       146 iih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~v  225 (673)
T KOG4378|consen  146 IIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLV  225 (673)
T ss_pred             EEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEE
Confidence            99999998777777644 33566899999877 6778999999999999998887766   556677899999875443 


Q ss_pred             -EeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCc-EEEEeecCCCCCCceE
Q 023822          178 -VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT-LLSTYNVKPVSRNSTL  255 (276)
Q Consensus       178 -~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~  255 (276)
                       +|.|..|.+||.+.......     -....+...++|+++|.+|++|+..|.|..||++..+ ++..+.   .|...|+
T Consensus       226 sVG~Dkki~~yD~~s~~s~~~-----l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~s---ah~~sVt  297 (673)
T KOG4378|consen  226 SVGYDKKINIYDIRSQASTDR-----LTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRS---AHDASVT  297 (673)
T ss_pred             EecccceEEEeecccccccce-----eeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEee---eccccee
Confidence             44499999999997543211     1233588999999999999999999999999998654 566666   6889999


Q ss_pred             EEEECCCC
Q 023822          256 EASFSPEG  263 (276)
Q Consensus       256 ~~~~s~~g  263 (276)
                      +++|-|.-
T Consensus       298 ~vafq~s~  305 (673)
T KOG4378|consen  298 RVAFQPSP  305 (673)
T ss_pred             EEEeeecc
Confidence            99997764

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.93  E-value=3.1e-22  Score=156.81  Aligned_cols=220  Identities=13%  Similarity=0.133  Sum_probs=162.5

Q ss_pred             eeeccCCCcEEEEEEcCCCCEEEEe-ecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEE
Q 023822           28 MSFRDYNGRISSMDFHKSSSYLVTA-SDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL  106 (276)
Q Consensus        28 ~~~~~h~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~  106 (276)
                      ..+..+.. +..++|+|+++.++++ +.|+.+++||+.+++.+..+... ..+..++|+|+++.++++...  ...+.+|
T Consensus        67 ~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~--~~~~~~~  142 (300)
T TIGR03866        67 GTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSET--TNMAHFI  142 (300)
T ss_pred             EeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecC--CCeEEEE
Confidence            33444433 5678999999977654 56899999999988877766532 346889999999999988761  2457788


Q ss_pred             EccCCceeeeecccCcceEEEEeccCCCEEEE-eeCCCeEEEEeccCceeeeeEeec---------CCCeeEecCCCcEE
Q 023822          107 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFIS-GSLDRTVLLWDQRAEKCQGLLRVQ---------GRPAAAYDDQGLVF  176 (276)
Q Consensus       107 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~---------~~~~~~~~~~~~~l  176 (276)
                      |..+++....+. ....+..++|+|++++|++ +..++.|++||+++++....+...         ....++++|+++.+
T Consensus       143 d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~  221 (300)
T TIGR03866       143 DTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTA  221 (300)
T ss_pred             eCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEE
Confidence            998877665543 2334578999999997754 456899999999998876655211         12358899999875


Q ss_pred             EEe--eCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEe-ecCCcEEEEECCCCcEEEEeecCCCCCCc
Q 023822          177 AVA--FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTLLSTYNVKPVSRNS  253 (276)
Q Consensus       177 ~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  253 (276)
                      .++  .++.+.+||.++.+.    .... .+...+.+++|+|+|++|+++ ..+|.|++||+.+++.+..+.    ....
T Consensus       222 ~~~~~~~~~i~v~d~~~~~~----~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~----~~~~  292 (300)
T TIGR03866       222 FVALGPANRVAVVDAKTYEV----LDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK----VGRL  292 (300)
T ss_pred             EEEcCCCCeEEEEECCCCcE----EEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE----cccc
Confidence            443  367899999986542    1111 233478899999999999886 468999999999999999998    3456


Q ss_pred             eEEEEECC
Q 023822          254 TLEASFSP  261 (276)
Q Consensus       254 v~~~~~s~  261 (276)
                      .+.++++|
T Consensus       293 ~~~~~~~~  300 (300)
T TIGR03866       293 PWGVVVRP  300 (300)
T ss_pred             cceeEeCC
Confidence            68888876

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.93  E-value=2.2e-24  Score=158.52  Aligned_cols=240  Identities=18%  Similarity=0.243  Sum_probs=177.9

Q ss_pred             cCCCcEEEEEEcCC----CCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccC-CeEEEeccCCCCCceEEE
Q 023822           32 DYNGRISSMDFHKS----SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP-TTVIYSSKNGWDESLRLL  106 (276)
Q Consensus        32 ~h~~~v~~~~~~~~----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~d~~i~~~  106 (276)
                      .|....+.++|+-+    ..+||.++.-|.|+|.|+.++++...+.+|...|..+.+.|+. +++++++.   |..|++|
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~Sk---D~svRlw  163 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASK---DHSVRLW  163 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecC---CceEEEE
Confidence            47778888898753    3478999999999999999999999999999999999999976 56677777   9999999


Q ss_pred             EccCCceeeee---cccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE------------------------
Q 023822          107 SLHDNKYLRYF---KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL------------------------  159 (276)
Q Consensus       107 d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------------------------  159 (276)
                      ++++..++..+   .+|.+.|.++.|++++.++++++.|.+|++|++...+....+                        
T Consensus       164 nI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~  243 (385)
T KOG1034|consen  164 NIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPD  243 (385)
T ss_pred             eccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccc
Confidence            99999998876   579999999999999999999999999999999844322111                        


Q ss_pred             ------eecCCCeeEecCCCcEEEEeeCCeEEEEecccCCCC----------CeeeeeecCCCCCceE--EEECCCCcEE
Q 023822          160 ------RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKG----------PFDIFSVGGDISDANV--VKFSNDGRLM  221 (276)
Q Consensus       160 ------~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~----------~~~~~~~~~~~~~i~~--~~~~~~~~~l  221 (276)
                            |...+-|+.|-. +.+|.-+.++.|..|.....+..          ......+.-....+.-  .+|.|-++.|
T Consensus       244 fst~diHrnyVDCvrw~g-d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l  322 (385)
T KOG1034|consen  244 FSTTDIHRNYVDCVRWFG-DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKML  322 (385)
T ss_pred             ccccccccchHHHHHHHh-hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHH
Confidence                  011111222221 22333444899999988322211          1112222223334444  4566778999


Q ss_pred             EEeecCCcEEEEECCCCcEEE-EeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          222 LLTTMEGHIHVLDSFRGTLLS-TYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       222 ~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      |.|...|.|.+||++...... +-..+......|...+|+.||..|+...+|++|
T Consensus       323 a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~V  377 (385)
T KOG1034|consen  323 ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTV  377 (385)
T ss_pred             hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcE
Confidence            999999999999998776632 111222356789999999999999999999986

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.93  E-value=4.6e-24  Score=156.65  Aligned_cols=228  Identities=12%  Similarity=0.186  Sum_probs=181.2

Q ss_pred             CcEEEEEEc-------CCCCEEEEeecCCeEEEEEccCCeeeeeeeeee-----eceEEEEEeccCCeEEEeccCCCCCc
Q 023822           35 GRISSMDFH-------KSSSYLVTASDDESIRLYDVTAATCLKTINSKK-----YGVDLVCFTSHPTTVIYSSKNGWDES  102 (276)
Q Consensus        35 ~~v~~~~~~-------~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~~~~d~~  102 (276)
                      ..|+..+|-       |+.+++|+.+.+.-|++||.-+|+....+..-.     ....+++|+|||.+|+.+.    ...
T Consensus       105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy----krc  180 (406)
T KOG2919|consen  105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY----KRC  180 (406)
T ss_pred             CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc----cce
Confidence            457777774       677899999999999999999999888775422     2467899999999999887    899


Q ss_pred             eEEEEc-cCCceee--ee-----cccCcceEEEEeccCC-CEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecC
Q 023822          103 LRLLSL-HDNKYLR--YF-----KGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDD  171 (276)
Q Consensus       103 i~~~d~-~~~~~~~--~~-----~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~  171 (276)
                      |+++|+ +.|+...  ..     .+..+-|.+++|+|-. +.++.++...++-||.-..+.+...+  +..+++.+.|.+
T Consensus       181 irvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~e  260 (406)
T KOG2919|consen  181 IRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCE  260 (406)
T ss_pred             EEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEecc
Confidence            999998 5554221  11     1236778999999954 48999999999999988888888887  777899999999


Q ss_pred             CCcEEEEee--CCeEEEEecccCCCCCeeeeeecCCCC-CceEE--EECCCCcEEEEeecCCcEEEEECCC-CcEEEEee
Q 023822          172 QGLVFAVAF--GGYIRMFDARKYEKGPFDIFSVGGDIS-DANVV--KFSNDGRLMLLTTMEGHIHVLDSFR-GTLLSTYN  245 (276)
Q Consensus       172 ~~~~l~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~-~i~~~--~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~  245 (276)
                      +|+.|.++.  +..|..||+|.....   ++.+..|.. .-..|  ...|++++|++|+.||.|++||+++ +..+..+.
T Consensus       261 dGn~lfsGaRk~dkIl~WDiR~~~~p---v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~  337 (406)
T KOG2919|consen  261 DGNKLFSGARKDDKILCWDIRYSRDP---VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTG  337 (406)
T ss_pred             CcCeecccccCCCeEEEEeehhccch---hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccc
Confidence            998887777  899999999986543   444444443 22334  4568899999999999999999988 66666666


Q ss_pred             cCCCCCCceEEEEECCCCcEEEEecCC
Q 023822          246 VKPVSRNSTLEASFSPEGMFVISGRVS  272 (276)
Q Consensus       246 ~~~~~~~~v~~~~~s~~g~~l~~~~~d  272 (276)
                         .+...++.++++|--.++|+++..
T Consensus       338 ---~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  338 ---NYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             ---cccccccceecCcccceeeeccCc
Confidence               588899999999998888887753

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=3.8e-25  Score=185.68  Aligned_cols=234  Identities=16%  Similarity=0.195  Sum_probs=189.2

Q ss_pred             CCcEEEEEEcCCCCE----EEEeecCCeEEEEEccCC------eeeeeeeeeeeceEEEEEeccCC-eEEEeccCCCCCc
Q 023822           34 NGRISSMDFHKSSSY----LVTASDDESIRLYDVTAA------TCLKTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDES  102 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~----l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~d~~  102 (276)
                      ..+.+.++|.+.+..    ||.|.+||.|.+||...-      ..+.+...|.+.|..+.|++... .+++|+.   +|.
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~---~ge  140 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGAD---DGE  140 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCC---CCc
Confidence            456789999987665    888999999999998652      34566788999999999999776 7777776   999


Q ss_pred             eEEEEccCCceeeee--cccCcceEEEEeccC-CCEEEEeeCCCeEEEEeccCceeeeeEeec----CCCeeEecCCC--
Q 023822          103 LRLLSLHDNKYLRYF--KGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQ----GRPAAAYDDQG--  173 (276)
Q Consensus       103 i~~~d~~~~~~~~~~--~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~--  173 (276)
                      |.|||++..+....+  ....+.|.+++|+.. ...|++++.+|++.|||+|..+.+..+...    ....++|+|+.  
T Consensus       141 I~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aT  220 (1049)
T KOG0307|consen  141 ILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHAT  220 (1049)
T ss_pred             EEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCce
Confidence            999999876544444  224678999999875 447899999999999999999877776222    24579999987  


Q ss_pred             cEEEEee-C--CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCC-cEEEEeecCCcEEEEECCCCcEEEEeecCCC
Q 023822          174 LVFAVAF-G--GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV  249 (276)
Q Consensus       174 ~~l~~~~-d--~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  249 (276)
                      ++++++. |  -.|.+||+|.... +  ...+.+|...|.++.|++.+ .+|++++.|+.|.+|+.++++.+..+.   .
T Consensus       221 ql~~As~dd~~PviqlWDlR~ass-P--~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p---~  294 (1049)
T KOG0307|consen  221 QLLVASGDDSAPVIQLWDLRFASS-P--LKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP---A  294 (1049)
T ss_pred             eeeeecCCCCCceeEeecccccCC-c--hhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC---C
Confidence            4555554 3  6899999997553 2  33446899999999999976 889999999999999999999999998   5


Q ss_pred             CCCceEEEEECCCCc-EEEEecCCCCCC
Q 023822          250 SRNSTLEASFSPEGM-FVISGRVSPFSS  276 (276)
Q Consensus       250 ~~~~v~~~~~s~~g~-~l~~~~~dg~vs  276 (276)
                      ....+..+.|.|... .++.++-||.|+
T Consensus       295 ~~nW~fdv~w~pr~P~~~A~asfdgkI~  322 (1049)
T KOG0307|consen  295 QGNWCFDVQWCPRNPSVMAAASFDGKIS  322 (1049)
T ss_pred             CCcceeeeeecCCCcchhhhheecccee
Confidence            778999999999775 888888888774

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.92  E-value=1.8e-23  Score=167.26  Aligned_cols=240  Identities=17%  Similarity=0.209  Sum_probs=184.1

Q ss_pred             eeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCC--eeee-----eeeeeeeceEEEEEeccCCeEEEeccCCCCC
Q 023822           29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA--TCLK-----TINSKKYGVDLVCFTSHPTTVIYSSKNGWDE  101 (276)
Q Consensus        29 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~  101 (276)
                      .+.||.+.|+++.|+|.+..|++++.|.++.+|...+.  --+.     .+.+.........|+|++..+++-+.   .|
T Consensus       262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~---~G  338 (764)
T KOG1063|consen  262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGR---TG  338 (764)
T ss_pred             hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecc---cC
Confidence            34599999999999999999999999999999987644  2222     22233456889999999999998887   99


Q ss_pred             ceEEEEccCC---ceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEecc--------------------Cc-----
Q 023822          102 SLRLLSLHDN---KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR--------------------AE-----  153 (276)
Q Consensus       102 ~i~~~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~--------------------~~-----  153 (276)
                      ..++|.....   .....+.+|.+.|.+++|+|.|.+|++.+.|.+-+++-.-                    .-     
T Consensus       339 g~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~  418 (764)
T KOG1063|consen  339 GFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE  418 (764)
T ss_pred             cEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC
Confidence            9999983222   2334567899999999999999999999999887775321                    00     


Q ss_pred             ----------eee-------------------------------------------------------------------
Q 023822          154 ----------KCQ-------------------------------------------------------------------  156 (276)
Q Consensus       154 ----------~~~-------------------------------------------------------------------  156 (276)
                                +..                                                                   
T Consensus       419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~  498 (764)
T KOG1063|consen  419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC  498 (764)
T ss_pred             CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence                      000                                                                   


Q ss_pred             --------------------eeE--eecCCCeeEecCCCcEEEEee------CCeEEEEecccCCCCCeeeeeecCCCCC
Q 023822          157 --------------------GLL--RVQGRPAAAYDDQGLVFAVAF------GGYIRMFDARKYEKGPFDIFSVGGDISD  208 (276)
Q Consensus       157 --------------------~~~--~~~~~~~~~~~~~~~~l~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~~~~  208 (276)
                                          +.+  |...+.+++.+|++++++++.      -.-|++|+..+...    ...+..|.-.
T Consensus       499 ~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~----~~~L~~HsLT  574 (764)
T KOG1063|consen  499 ELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ----VQELEGHSLT  574 (764)
T ss_pred             hccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh----hheecccceE
Confidence                                000  112233778889999999887      25699999887554    5567889999


Q ss_pred             ceEEEECCCCcEEEEeecCCcEEEEECCCCcE-EEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          209 ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL-LSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       209 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      |+.++|||||++|++.+.|.++.+|....... -..+.....|..-|.+..|+|++++++++|-|.+|
T Consensus       575 VT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~V  642 (764)
T KOG1063|consen  575 VTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKV  642 (764)
T ss_pred             EEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceE
Confidence            99999999999999999999999998754322 12222233699999999999999999999999886

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=5.5e-24  Score=166.54  Aligned_cols=247  Identities=22%  Similarity=0.304  Sum_probs=190.5

Q ss_pred             HhhccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccC--------CeeeeeeeeeeeceEEEEEeccCCeE
Q 023822           20 ILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA--------ATCLKTINSKKYGVDLVCFTSHPTTV   91 (276)
Q Consensus        20 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l   91 (276)
                      ..+.+.+..++..|.+.|+.++|.|-...|++++.||++++|+++.        -+++.++.+|.++|.|+++.+++.++
T Consensus       280 ~~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~  359 (577)
T KOG0642|consen  280 FTKKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHC  359 (577)
T ss_pred             hheecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEE
Confidence            3455777778999999999999999999999999999999999932        25778899999999999999999999


Q ss_pred             EEeccCCCCCceEEEEccCC----------ceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--
Q 023822           92 IYSSKNGWDESLRLLSLHDN----------KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--  159 (276)
Q Consensus        92 ~~~~~~~~d~~i~~~d~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--  159 (276)
                      ++++.   ||.|+.|++...          .....+.+|.+.++.+++++....|++++.||+++.|+.....+ ..+  
T Consensus       360 ysgg~---Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~  435 (577)
T KOG0642|consen  360 YSGGI---DGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGE  435 (577)
T ss_pred             Eeecc---CceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCC
Confidence            99999   999999976422          12346789999999999999999999999999999999877665 222  


Q ss_pred             -eecC-CCeeEecCCC-cEEEEee-CCeEEEEecccCCCCCeeeeeecC-----CCCCceEEEECCCCcEEEEeecCCcE
Q 023822          160 -RVQG-RPAAAYDDQG-LVFAVAF-GGYIRMFDARKYEKGPFDIFSVGG-----DISDANVVKFSNDGRLMLLTTMEGHI  230 (276)
Q Consensus       160 -~~~~-~~~~~~~~~~-~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~dg~i  230 (276)
                       ...+ ...+.+-... .+++++. -+.-.++++.....  +.++....     ....+..+.++|.+.+.+++..|+.|
T Consensus       436 ~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~--~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~I  513 (577)
T KOG0642|consen  436 PKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSD--LLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSI  513 (577)
T ss_pred             ccccCCcceEeeccchhHhhhhhcccccccchhhhhhhh--eeeccccCCCcccccCccceEEecCCCCeeEecccCCce
Confidence             2222 2244443333 1222221 23333344333221  11111111     12357789999999999999999999


Q ss_pred             EEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          231 HVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       231 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      +++|..+++++....   .|...++++++.|+|.+|++++.|+-|
T Consensus       514 r~~dn~~~~~l~s~~---a~~~svtslai~~ng~~l~s~s~d~sv  555 (577)
T KOG0642|consen  514 RFFDNKTGKILHSMV---AHKDSVTSLAIDPNGPYLMSGSHDGSV  555 (577)
T ss_pred             ecccccccccchhee---eccceecceeecCCCceEEeecCCcee
Confidence            999999999999988   789999999999999999999999865

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=3.3e-23  Score=157.83  Aligned_cols=229  Identities=15%  Similarity=0.183  Sum_probs=170.3

Q ss_pred             EEEEEcC-------CCCEEEEeecCCeEEEEEccCCe---ee------------------eeeeeeeeceEEEEEeccCC
Q 023822           38 SSMDFHK-------SSSYLVTASDDESIRLYDVTAAT---CL------------------KTINSKKYGVDLVCFTSHPT   89 (276)
Q Consensus        38 ~~~~~~~-------~~~~l~~~~~d~~i~iwd~~~~~---~~------------------~~~~~~~~~v~~~~~~~~~~   89 (276)
                      .|++|..       .|+++|.|+.|..|.|||+.-..   +.                  ..-.+|...|..++|+..-+
T Consensus       177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~  256 (463)
T KOG0270|consen  177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR  256 (463)
T ss_pred             hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence            5666642       36899999999999999985211   00                  11235777888999988765


Q ss_pred             e-EEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCC-CEEEEeeCCCeEEEEeccCceeee-eE-eecCCC
Q 023822           90 T-VIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQG-LL-RVQGRP  165 (276)
Q Consensus        90 ~-l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~-~~-~~~~~~  165 (276)
                      . |++++.   |.+|++||+.++++..++..|.+.|.++.|+|.. ..|++|+.|++|.+.|.|...... .+ -...+.
T Consensus       257 nVLaSgsa---D~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VE  333 (463)
T KOG0270|consen  257 NVLASGSA---DKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVE  333 (463)
T ss_pred             eeEEecCC---CceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceE
Confidence            5 555555   9999999999999999999999999999999964 589999999999999999533322 22 445677


Q ss_pred             eeEecCCCc-EEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCC-cEEEEeecCCcEEEEECCCCcEEE
Q 023822          166 AAAYDDQGL-VFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLS  242 (276)
Q Consensus       166 ~~~~~~~~~-~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~  242 (276)
                      .++|.|... .+.++. ||.++-+|+|+...   .++.+..|..+|.++++++.- .++++++.|+.|++|++.......
T Consensus       334 kv~w~~~se~~f~~~tddG~v~~~D~R~~~~---~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~  410 (463)
T KOG0270|consen  334 KVAWDPHSENSFFVSTDDGTVYYFDIRNPGK---PVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKS  410 (463)
T ss_pred             EEEecCCCceeEEEecCCceEEeeecCCCCC---ceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcc
Confidence            899998763 333444 89999999998753   377888899999999999864 568889999999999986544422


Q ss_pred             EeecCCCCCCceEEEEECCCCc-EEEEecCCC
Q 023822          243 TYNVKPVSRNSTLEASFSPEGM-FVISGRVSP  273 (276)
Q Consensus       243 ~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg  273 (276)
                      .... .-.-+...+.++.|+-. .|+.|+..+
T Consensus       411 v~~~-~~~~~rl~c~~~~~~~a~~la~GG~k~  441 (463)
T KOG0270|consen  411 VKEH-SFKLGRLHCFALDPDVAFTLAFGGEKA  441 (463)
T ss_pred             cccc-cccccceeecccCCCcceEEEecCccc
Confidence            2210 01223466777777764 567777665

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=2e-23  Score=168.05  Aligned_cols=250  Identities=14%  Similarity=0.221  Sum_probs=191.1

Q ss_pred             ccccceeeccCCCcEEEEEEcCC-----------CCEEEEeecCCeEEEEEccCCeeeeee-------------------
Q 023822           23 SMEVGMSFRDYNGRISSMDFHKS-----------SSYLVTASDDESIRLYDVTAATCLKTI-------------------   72 (276)
Q Consensus        23 ~~~~~~~~~~h~~~v~~~~~~~~-----------~~~l~~~~~d~~i~iwd~~~~~~~~~~-------------------   72 (276)
                      +......+--|...|+.+.--|-           ...+.|++.|++|++||++.+..-..+                   
T Consensus       358 kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~  437 (1080)
T KOG1408|consen  358 KVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQ  437 (1080)
T ss_pred             cccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCch
Confidence            33444555668888888776551           235889999999999998752110000                   


Q ss_pred             ------------------eeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEecc---
Q 023822           73 ------------------NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS---  131 (276)
Q Consensus        73 ------------------~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~---  131 (276)
                                        -.....+.+++.+|++++|++|..   -|.+++|++..-+....+..|...|.|+.|+.   
T Consensus       438 q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr---~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~  514 (1080)
T KOG1408|consen  438 QIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDR---GGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVL  514 (1080)
T ss_pred             hhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCc---cCceEEEEehhhhhhhheecccceeEEEeecCchh
Confidence                              012346899999999999999998   89999999999998889999999999999985   


Q ss_pred             CCCEEEEeeCCCeEEEEeccCc-eeeeeE--eecCCCeeEecCCC---cEEEEeeCCeEEEEecccCCCCC-eeeeeecC
Q 023822          132 SKDCFISGSLDRTVLLWDQRAE-KCQGLL--RVQGRPAAAYDDQG---LVFAVAFGGYIRMFDARKYEKGP-FDIFSVGG  204 (276)
Q Consensus       132 ~~~~l~~~~~d~~i~iwd~~~~-~~~~~~--~~~~~~~~~~~~~~---~~l~~~~d~~i~~~d~~~~~~~~-~~~~~~~~  204 (276)
                      ..++|++++.|.-|++||.... ..++++  |...+..+.|...|   +++.+|.|+.|.+=-.+...... +.......
T Consensus       515 ~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~  594 (1080)
T KOG1408|consen  515 TNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTL  594 (1080)
T ss_pred             hhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccccccc
Confidence            3468999999999999998754 444555  55668888887766   55566668777654433222111 11111112


Q ss_pred             CCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          205 DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       205 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      ....+..++..|..+++++++.|..|+|||+.+|+..+.|+....|++....+...|.|-||++...|.+.
T Consensus       595 ~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl  665 (1080)
T KOG1408|consen  595 SKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTL  665 (1080)
T ss_pred             ccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCce
Confidence            23468899999999999999999999999999999999999887888999999999999999999999875

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2.9e-22  Score=160.03  Aligned_cols=242  Identities=14%  Similarity=0.145  Sum_probs=194.2

Q ss_pred             cccceeeccC-CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCc
Q 023822           24 MEVGMSFRDY-NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES  102 (276)
Q Consensus        24 ~~~~~~~~~h-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~  102 (276)
                      +-....+.++ +..|.+++|++ +..|.+.+.+|.|.-||+.+++....+....+.|++++.+|.+..+++++.   ||.
T Consensus        58 w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~Igcd---dGv  133 (691)
T KOG2048|consen   58 WFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCD---DGV  133 (691)
T ss_pred             ceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecC---Cce
Confidence            3344455555 46799999994 567888889999999999999999999999999999999999999999998   998


Q ss_pred             eEEEEccCCceee--eecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE-----eecC-CC----eeEec
Q 023822          103 LRLLSLHDNKYLR--YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-----RVQG-RP----AAAYD  170 (276)
Q Consensus       103 i~~~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~~-~~----~~~~~  170 (276)
                      +..++...++...  .+...++.|.+++|+|++..+++|+.||.|++||..++...+..     .... -.    ++.+-
T Consensus       134 l~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L  213 (691)
T KOG2048|consen  134 LYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL  213 (691)
T ss_pred             EEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe
Confidence            8888887776543  34556789999999999999999999999999999998877733     1111 22    44555


Q ss_pred             CCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEE-EEeecCCC
Q 023822          171 DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL-STYNVKPV  249 (276)
Q Consensus       171 ~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~  249 (276)
                      .++.++++-+.|.|.+||...+..    +.....|...|.+++..+++.++++++.|+.|..|...+.+.. -.......
T Consensus       214 rd~tI~sgDS~G~V~FWd~~~gTL----iqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~  289 (691)
T KOG2048|consen  214 RDSTIASGDSAGTVTFWDSIFGTL----IQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDL  289 (691)
T ss_pred             ecCcEEEecCCceEEEEcccCcch----hhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccC
Confidence            677777777789999999988765    5566678899999999999999999999999999887665431 11111225


Q ss_pred             CCCceEEEEECCCCcEEEEecCCCCC
Q 023822          250 SRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       250 ~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      |...+.+++..++  .|++|+.|.++
T Consensus       290 h~hdvrs~av~~~--~l~sgG~d~~l  313 (691)
T KOG2048|consen  290 HAHDVRSMAVIEN--ALISGGRDFTL  313 (691)
T ss_pred             Ccccceeeeeecc--eEEecceeeEE
Confidence            8889999999888  89999998764

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=1.4e-22  Score=147.55  Aligned_cols=189  Identities=11%  Similarity=0.181  Sum_probs=149.2

Q ss_pred             eeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCC--eEEEeccCCCCCceEE
Q 023822           28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT--TVIYSSKNGWDESLRL  105 (276)
Q Consensus        28 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~~~~d~~i~~  105 (276)
                      +....|.++|.+++|+.||..+++|+.|+.+++||+.+++ +..+..|..+|..+.|-+...  .|++++-   |.+|+.
T Consensus        66 ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSW---DKTlKf  141 (347)
T KOG0647|consen   66 KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSW---DKTLKF  141 (347)
T ss_pred             hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEeccc---ccceee
Confidence            4456799999999999999999999999999999999994 667888999999999988766  6777775   999999


Q ss_pred             EEccCCceeeeec-------------------------------------cc----CcceEEEEeccCCCEEEEeeCCCe
Q 023822          106 LSLHDNKYLRYFK-------------------------------------GH----HDRVVSLSLCSSKDCFISGSLDRT  144 (276)
Q Consensus       106 ~d~~~~~~~~~~~-------------------------------------~~----~~~i~~~~~~~~~~~l~~~~~d~~  144 (276)
                      ||.+...++.++.                                     .+    .-.+.|++..++....+.|+-+|+
T Consensus       142 WD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGr  221 (347)
T KOG0647|consen  142 WDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGR  221 (347)
T ss_pred             cccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecce
Confidence            9998765544321                                     01    124678888888887888999999


Q ss_pred             EEEEeccCceeee--eE--ee---------cCCCeeEecCCC-cEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCce
Q 023822          145 VLLWDQRAEKCQG--LL--RV---------QGRPAAAYDDQG-LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDAN  210 (276)
Q Consensus       145 i~iwd~~~~~~~~--~~--~~---------~~~~~~~~~~~~-~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~  210 (276)
                      +.+..+..+.+..  .+  |.         ..++.++|+|.. .++++|+||+..+||-....+    +...+.+..+|+
T Consensus       222 v~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~k----Lk~s~~~~qpIt  297 (347)
T KOG0647|consen  222 VAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTK----LKTSETHPQPIT  297 (347)
T ss_pred             EEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhh----hhccCcCCCccc
Confidence            8888887753322  22  21         225578999964 666667799999999876554    666678899999


Q ss_pred             EEEECCCCcEEEEe
Q 023822          211 VVKFSNDGRLMLLT  224 (276)
Q Consensus       211 ~~~~~~~~~~l~~~  224 (276)
                      ++.|+.+|.+++.+
T Consensus       298 cc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  298 CCSFNRNGSIFAYA  311 (347)
T ss_pred             eeEecCCCCEEEEE
Confidence            99999999988765

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.91  E-value=7.2e-25  Score=178.71  Aligned_cols=245  Identities=18%  Similarity=0.308  Sum_probs=194.9

Q ss_pred             eeeehHHHhhccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEE
Q 023822           13 SLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVI   92 (276)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   92 (276)
                      .+..+....+.++.++.+.+|...|+|+.|...|.++++|+.|..++||..+++.++....+|.+.++.++.+.++..++
T Consensus       169 ~~akPgtmvqkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~ia  248 (1113)
T KOG0644|consen  169 SIAKPGTMVQKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIA  248 (1113)
T ss_pred             eecCcHHHHHHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhh
Confidence            34555667789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeee--------------
Q 023822           93 YSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL--------------  158 (276)
Q Consensus        93 ~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--------------  158 (276)
                      +++.   |..|++|.+..+.++..+.+|++.|++++|+|-.    +.+.||++++||.+-.-.+..              
T Consensus       249 aaS~---D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s  321 (1113)
T KOG0644|consen  249 AASN---DKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDS  321 (1113)
T ss_pred             hccc---CceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceee
Confidence            9988   9999999999999999999999999999999944    778899999999871100000              


Q ss_pred             E------------------eecCCCeeEecCCCcEEEEee------------CCeEEEEecccCCCCCeeeeeecCCCCC
Q 023822          159 L------------------RVQGRPAAAYDDQGLVFAVAF------------GGYIRMFDARKYEKGPFDIFSVGGDISD  208 (276)
Q Consensus       159 ~------------------~~~~~~~~~~~~~~~~l~~~~------------d~~i~~~d~~~~~~~~~~~~~~~~~~~~  208 (276)
                      +                  ..+...++++......++.+.            +-.+.+|++.++..    .+.+.+|...
T Consensus       322 ~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l----~H~l~ghsd~  397 (1113)
T KOG0644|consen  322 ILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQL----LHNLMGHSDE  397 (1113)
T ss_pred             eeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchh----hhhhcccccc
Confidence            0                  000111233333333333222            45677888877655    5666778889


Q ss_pred             ceEEEECCCC-cEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecC
Q 023822          209 ANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRV  271 (276)
Q Consensus       209 i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  271 (276)
                      +..+.++|-. +...+++.||...|||+..|.+++.+..  + .+.+..-+||+||..++....
T Consensus       398 ~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~--g-h~kl~d~kFSqdgts~~lsd~  458 (1113)
T KOG0644|consen  398 VYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFI--G-HGKLVDGKFSQDGTSIALSDD  458 (1113)
T ss_pred             eeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeec--c-cceeeccccCCCCceEecCCC
Confidence            9999999955 5566789999999999999999888873  3 566777899999887765443

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.91  E-value=2.7e-23  Score=150.92  Aligned_cols=194  Identities=13%  Similarity=0.156  Sum_probs=154.5

Q ss_pred             eeeeeceEEEEEec-cCCeEEEeccCCCCCceEEEEccCCce----------e-----eeecccCcceEEEEecc-CCCE
Q 023822           73 NSKKYGVDLVCFTS-HPTTVIYSSKNGWDESLRLLSLHDNKY----------L-----RYFKGHHDRVVSLSLCS-SKDC  135 (276)
Q Consensus        73 ~~~~~~v~~~~~~~-~~~~l~~~~~~~~d~~i~~~d~~~~~~----------~-----~~~~~~~~~i~~~~~~~-~~~~  135 (276)
                      ..|.+.|..+...+ .++++++|+.   ||.|.+||++....          .     ..-.+|.-.|.++.|-| |..+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGga---dgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm  116 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGA---DGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM  116 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCC---CccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence            45667888888877 5788899988   99999999976431          1     11235777899999998 4458


Q ss_pred             EEEeeCCCeEEEEeccCceeeeeEe-ecCCCeeEecCC---CcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCce
Q 023822          136 FISGSLDRTVLLWDQRAEKCQGLLR-VQGRPAAAYDDQ---GLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDAN  210 (276)
Q Consensus       136 l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~---~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~  210 (276)
                      |.+++-|.++++||..+.+....+. ...+..-+++|-   ..+++++. +-+|++.|+.++..    ...+.+|...|.
T Consensus       117 FtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~----sH~LsGHr~~vl  192 (397)
T KOG4283|consen  117 FTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF----SHTLSGHRDGVL  192 (397)
T ss_pred             eecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc----eeeeccccCceE
Confidence            9999999999999999998888874 445677778774   35777777 78999999999876    788899999999


Q ss_pred             EEEECCCCcE-EEEeecCCcEEEEECCCC-cEEEEe-----------ecCCCCCCceEEEEECCCCcEEEEecCCC
Q 023822          211 VVKFSNDGRL-MLLTTMEGHIHVLDSFRG-TLLSTY-----------NVKPVSRNSTLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       211 ~~~~~~~~~~-l~~~~~dg~i~i~d~~~~-~~~~~~-----------~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  273 (276)
                      ++.|+|...+ |++|+.||.|++||++.. .+...+           +....|.+.++.++|+.+|.++++++.|.
T Consensus       193 aV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~  268 (397)
T KOG4283|consen  193 AVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD  268 (397)
T ss_pred             EEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCcc
Confidence            9999998765 678999999999998754 233222           22335788999999999999999988774

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.91  E-value=9.5e-22  Score=146.84  Aligned_cols=229  Identities=14%  Similarity=0.224  Sum_probs=175.1

Q ss_pred             CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCce
Q 023822           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY  113 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~  113 (276)
                      ...+..+.|+.+...|..|+.|| .++|+.+..............|..+-|+  ...++..+.. ..+.++++++.....
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~-qpr~Lkv~~~Kk~~~   80 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIK-QPRKLKVVHFKKKTT   80 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecC-CCceEEEEEcccCce
Confidence            44577788999999999999998 7888876554433333333445566664  4556555542 146799999988888


Q ss_pred             eeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeec---CCCeeEecC--CCcEEEEee---CCeEE
Q 023822          114 LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ---GRPAAAYDD--QGLVFAVAF---GGYIR  185 (276)
Q Consensus       114 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~--~~~~l~~~~---d~~i~  185 (276)
                      +..+. ...+|.++.++.  +.|+++-.+. |+|||++..+.++++...   +...+++++  .+.+++.-.   .|.|.
T Consensus        81 ICe~~-fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~  156 (391)
T KOG2110|consen   81 ICEIF-FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV  156 (391)
T ss_pred             EEEEe-cCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence            77776 567799999854  4567666554 999999999999988332   222455554  555777655   59999


Q ss_pred             EEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCc-EEEEECCCCcEEEEeecCCCCCCceEEEEECCCCc
Q 023822          186 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGH-IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM  264 (276)
Q Consensus       186 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  264 (276)
                      +||..+.+.    ...+..|.+++.+++|+|+|.+||++|+.|+ |||+.+.+|+.+.+|+... ....|.+++|+|+++
T Consensus       157 l~d~~nl~~----v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~-~~~~IySL~Fs~ds~  231 (391)
T KOG2110|consen  157 LFDTINLQP----VNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT-YPVSIYSLSFSPDSQ  231 (391)
T ss_pred             EEEccccee----eeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc-eeeEEEEEEECCCCC
Confidence            999988554    5566789999999999999999999999997 8999999999999998533 356789999999999


Q ss_pred             EEEEecCCCCC
Q 023822          265 FVISGRVSPFS  275 (276)
Q Consensus       265 ~l~~~~~dg~v  275 (276)
                      +|++.|..++|
T Consensus       232 ~L~~sS~TeTV  242 (391)
T KOG2110|consen  232 FLAASSNTETV  242 (391)
T ss_pred             eEEEecCCCeE
Confidence            99999999886

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.91  E-value=1e-22  Score=147.44  Aligned_cols=237  Identities=16%  Similarity=0.231  Sum_probs=178.3

Q ss_pred             ceeeccCCCcEEEEEEcC-CCCEEEEeecC-------CeEEEEEccCC---------eeeeeee-eeeeceEEEEEeccC
Q 023822           27 GMSFRDYNGRISSMDFHK-SSSYLVTASDD-------ESIRLYDVTAA---------TCLKTIN-SKKYGVDLVCFTSHP   88 (276)
Q Consensus        27 ~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d-------~~i~iwd~~~~---------~~~~~~~-~~~~~v~~~~~~~~~   88 (276)
                      .+.|..|.+.|..++-+| +...|+++..+       ..+.||.+...         +++..+. .+-+.+.|+.|.|++
T Consensus        56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns  135 (370)
T KOG1007|consen   56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS  135 (370)
T ss_pred             hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence            355777899999999999 55566666442       24679998643         2233333 344589999999999


Q ss_pred             CeEEEeccCCCCCceEEEEccCCce-eeeec-----ccCcceEEEEecc--CCCEEEEeeCCCeEEEEeccCceeeeeE-
Q 023822           89 TTVIYSSKNGWDESLRLLSLHDNKY-LRYFK-----GHHDRVVSLSLCS--SKDCFISGSLDRTVLLWDQRAEKCQGLL-  159 (276)
Q Consensus        89 ~~l~~~~~~~~d~~i~~~d~~~~~~-~~~~~-----~~~~~i~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~-  159 (276)
                      ..+++-.    |..|.+|++..+.. +..+.     .+....++-+|+|  +++.+++.+ |+++..||+|+.++...+ 
T Consensus       136 ~klasm~----dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~  210 (370)
T KOG1007|consen  136 DKLASMD----DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIE  210 (370)
T ss_pred             CeeEEec----cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchh
Confidence            9999887    89999999987755 33332     3456678889998  677777765 889999999998877777 


Q ss_pred             --eecCCCeeEecCCCc-EEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCC-CcEEEEeecCCcEEEEE
Q 023822          160 --RVQGRPAAAYDDQGL-VFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLD  234 (276)
Q Consensus       160 --~~~~~~~~~~~~~~~-~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d  234 (276)
                        |...++.+.|+|+.+ +|+++. ||.|++||.|..+.   .+..+.+|...+.++.|+|. .+++++|+.|..|.+|.
T Consensus       211 dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~---pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsc  287 (370)
T KOG1007|consen  211 DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF---PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSC  287 (370)
T ss_pred             hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc---cccccCCCceEEEEEEecCccceEEEecCCCceeEEEe
Confidence              666788999999875 444444 79999999997543   47778899999999999995 47889999999999997


Q ss_pred             CCCC-----------------------------cEEEEeecCCCCCCceEEEEECCCCcE-EEEecCCCC
Q 023822          235 SFRG-----------------------------TLLSTYNVKPVSRNSTLEASFSPEGMF-VISGRVSPF  274 (276)
Q Consensus       235 ~~~~-----------------------------~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~dg~  274 (276)
                      ...-                             ..+.++.   .|+..|.+++||.-..+ +|+-+.||-
T Consensus       288 a~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyd---ehEDSVY~~aWSsadPWiFASLSYDGR  354 (370)
T KOG1007|consen  288 ASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYD---EHEDSVYALAWSSADPWIFASLSYDGR  354 (370)
T ss_pred             ccccccccccccccccccCcchhhHHhccccccccccccc---ccccceEEEeeccCCCeeEEEeccCce
Confidence            5321                             1122333   58899999999886665 577777774

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=3.1e-23  Score=157.97  Aligned_cols=207  Identities=14%  Similarity=0.149  Sum_probs=159.2

Q ss_pred             ccCCCcEEEEEEcCC-CCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccC-CeEEEeccCCCCCceEEEEc
Q 023822           31 RDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP-TTVIYSSKNGWDESLRLLSL  108 (276)
Q Consensus        31 ~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~d~~i~~~d~  108 (276)
                      .+|+..|..++|+.. .+.||+||.|.+|++||+.++++..++..|..+|.++.|+|.. ..|++|+.   |+++.+.|.
T Consensus       240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~---D~~V~l~D~  316 (463)
T KOG0270|consen  240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSY---DGTVALKDC  316 (463)
T ss_pred             ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccc---cceEEeeec
Confidence            479999999999984 5689999999999999999999999999999999999999965 56777777   999999999


Q ss_pred             cCCceeeeecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCc-eeeeeE--eecCCCeeEecCCC-cEEEEee-CC
Q 023822          109 HDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAE-KCQGLL--RVQGRPAAAYDDQG-LVFAVAF-GG  182 (276)
Q Consensus       109 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~-~~~~~~--~~~~~~~~~~~~~~-~~l~~~~-d~  182 (276)
                      +........-...+.|-.++|.|... .++++..||+|+-+|+|+. +++.++  |..++.++++++.- .++++++ |+
T Consensus       317 R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~  396 (463)
T KOG0270|consen  317 RDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDK  396 (463)
T ss_pred             cCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccc
Confidence            85333222222567899999998655 6788889999999999987 666666  67789999998865 3344444 99


Q ss_pred             eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCC-cEEEEeecCCcEEEEECCCCcEEE
Q 023822          183 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLS  242 (276)
Q Consensus       183 ~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~  242 (276)
                      .+++|++............+.  -+...|.++.|+- -.++.|+..+.+++||+.+...+.
T Consensus       397 ~Vklw~~~~~~~~~v~~~~~~--~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~  455 (463)
T KOG0270|consen  397 VVKLWKFDVDSPKSVKEHSFK--LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR  455 (463)
T ss_pred             eEEEEeecCCCCccccccccc--ccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence            999999976443222222221  1235677788875 456778888899999998776543

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.3e-22  Score=148.90  Aligned_cols=195  Identities=16%  Similarity=0.218  Sum_probs=159.2

Q ss_pred             cCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccC-
Q 023822           32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD-  110 (276)
Q Consensus        32 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~-  110 (276)
                      .|+-.|..+-...++.+|++++.|..|.+|++. |+.+..+......-+..+.+|+|+++++++.   .-.|++|.+-- 
T Consensus       185 kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gF---TpDVkVwE~~f~  260 (420)
T KOG2096|consen  185 KHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGF---TPDVKVWEPIFT  260 (420)
T ss_pred             hcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecC---CCCceEEEEEec
Confidence            466677777777788999999999999999997 9999999888878889999999999999987   88999998632 


Q ss_pred             --C-----ceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCc----e---eeeeE------eecCCCeeEec
Q 023822          111 --N-----KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE----K---CQGLL------RVQGRPAAAYD  170 (276)
Q Consensus       111 --~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----~---~~~~~------~~~~~~~~~~~  170 (276)
                        |     ..+..+++|...|..++|+++...+++.+.||++++||++-.    +   .++..      .......+.++
T Consensus       261 kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~ls  340 (420)
T KOG2096|consen  261 KDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELS  340 (420)
T ss_pred             cCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeC
Confidence              2     234578999999999999999999999999999999997632    1   11111      11223378999


Q ss_pred             CCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEE
Q 023822          171 DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD  234 (276)
Q Consensus       171 ~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  234 (276)
                      |.+..|+.+....+++|..+.++..+.   ....|...|.+++|+++|+++++++ |..++++.
T Consensus       341 P~g~~lA~s~gs~l~~~~se~g~~~~~---~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  341 PSGDSLAVSFGSDLKVFASEDGKDYPE---LEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             CCCcEEEeecCCceEEEEcccCccchh---HHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence            999999999999999999988664221   1245778999999999999999886 66788876

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.91  E-value=7.3e-23  Score=163.82  Aligned_cols=227  Identities=17%  Similarity=0.254  Sum_probs=178.6

Q ss_pred             cEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceee
Q 023822           36 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR  115 (276)
Q Consensus        36 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~  115 (276)
                      .|..++|-|||..|+.+.. ..+.+||...|..++++++|+..|.+++|+.+|+.+++|+.   |..|.+|...-... .
T Consensus        14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~a---DK~VI~W~~klEG~-L   88 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSA---DKSVIIWTSKLEGI-L   88 (1081)
T ss_pred             chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCC---ceeEEEecccccce-e
Confidence            7999999999999888754 47999999999999999999999999999999999999998   99999998643322 2


Q ss_pred             eecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEee-CCeEEEEecccCCC
Q 023822          116 YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEK  194 (276)
Q Consensus       116 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~  194 (276)
                      .+ .|.+.|.||.|+|-...|++++-. ..-+|........+......+.+++|..||++++.|. +|+|.+-+-...  
T Consensus        89 kY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gE--  164 (1081)
T KOG1538|consen   89 KY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGE--  164 (1081)
T ss_pred             ee-ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCC--
Confidence            23 499999999999999999998864 4678887766555544555677899999999999998 899988753321  


Q ss_pred             CCeeeeeecCCCCCc----------------------------------------------eEEEECCCCcEEEEeecCC
Q 023822          195 GPFDIFSVGGDISDA----------------------------------------------NVVKFSNDGRLMLLTTMEG  228 (276)
Q Consensus       195 ~~~~~~~~~~~~~~i----------------------------------------------~~~~~~~~~~~l~~~~~dg  228 (276)
                      +...+....+.+.+|                                              .|+.+-|+|.|++.|+.|+
T Consensus       165 ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk  244 (1081)
T KOG1538|consen  165 EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDK  244 (1081)
T ss_pred             cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCC
Confidence            111122222233333                                              3455555666888888888


Q ss_pred             cEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          229 HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       229 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      .+++|- +.|-.+.++.   .....|+.++..|++++++.|..|||+
T Consensus       245 ~L~~fT-R~GvrLGTvg---~~D~WIWtV~~~PNsQ~v~~GCqDGTi  287 (1081)
T KOG1538|consen  245 QLSLFT-RDGVRLGTVG---EQDSWIWTVQAKPNSQYVVVGCQDGTI  287 (1081)
T ss_pred             ceEEEe-ecCeEEeecc---ccceeEEEEEEccCCceEEEEEccCee
Confidence            888887 5677777766   467899999999999999999999986

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.91  E-value=9.9e-23  Score=155.82  Aligned_cols=246  Identities=17%  Similarity=0.266  Sum_probs=182.1

Q ss_pred             hccccceeeccCCCcEEEEEEcC-CCCEEEEeecCCeEEEEEccCCee--eeeeeeeeeceEEEEEeccCCeEEEeccCC
Q 023822           22 QSMEVGMSFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATC--LKTINSKKYGVDLVCFTSHPTTVIYSSKNG   98 (276)
Q Consensus        22 ~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~   98 (276)
                      +....+..+..|.++|.++.|+| +...+++.|.||+|++-|++++..  +............+.|+.....++++..  
T Consensus       222 ~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~--  299 (498)
T KOG4328|consen  222 KDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDN--  299 (498)
T ss_pred             CccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeec--
Confidence            34455667889999999999999 556889999999999999987643  3333335556788899988888888887  


Q ss_pred             CCCceEEEEccCCce-eeeecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCceeeee--E----eecCCCeeEec
Q 023822           99 WDESLRLLSLHDNKY-LRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGL--L----RVQGRPAAAYD  170 (276)
Q Consensus        99 ~d~~i~~~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~--~----~~~~~~~~~~~  170 (276)
                       =|...+||.++++. ...+.-|...|.+++++|... +|++++.|++++|||+|.......  +    |...+.++.|+
T Consensus       300 -~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFS  378 (498)
T KOG4328|consen  300 -VGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFS  378 (498)
T ss_pred             -ccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEc
Confidence             67999999998765 666777889999999999665 799999999999999997544432  2    66778899999


Q ss_pred             CCC-cEEEEeeCCeEEEEecc---cCCCCCeeeeeecCCCC--CceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEe
Q 023822          171 DQG-LVFAVAFGGYIRMFDAR---KYEKGPFDIFSVGGDIS--DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY  244 (276)
Q Consensus       171 ~~~-~~l~~~~d~~i~~~d~~---~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  244 (276)
                      |.+ .+++++.|..|+|||..   ........+..-..+..  ......|.|+..++++|-.-..|-|+|-..++.+..+
T Consensus       379 Ps~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el  458 (498)
T KOG4328|consen  379 PSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCEL  458 (498)
T ss_pred             CCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeec
Confidence            976 55555559999999984   21111111111111111  2345689999999999999999999998888878776


Q ss_pred             ecCCCCCCceEE-EEECCCCcEEEEecCC
Q 023822          245 NVKPVSRNSTLE-ASFSPEGMFVISGRVS  272 (276)
Q Consensus       245 ~~~~~~~~~v~~-~~~s~~g~~l~~~~~d  272 (276)
                      ...  ....|.+ ..|+|-+..+++|+..
T Consensus       459 ~~P--~~~tI~~vn~~HP~~~~~~aG~~s  485 (498)
T KOG4328|consen  459 HDP--ESSTIPSVNEFHPMRDTLAAGGNS  485 (498)
T ss_pred             cCc--cccccccceeecccccceeccCCc
Confidence            532  2223433 5799988866666543

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.91  E-value=2e-21  Score=158.68  Aligned_cols=147  Identities=18%  Similarity=0.254  Sum_probs=119.8

Q ss_pred             EEEEEEcCC--CCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCcee
Q 023822           37 ISSMDFHKS--SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL  114 (276)
Q Consensus        37 v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~  114 (276)
                      |+++. +|.  =+.++.|+.+|.+.+|++.+++.+.+++.+...|+++.-+|--..+++|..   +|+|.+++++.++.+
T Consensus       162 Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~---~G~ViifNlK~dkil  237 (910)
T KOG1539|consen  162 ITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLE---NGTVIIFNLKFDKIL  237 (910)
T ss_pred             eeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEecc---CceEEEEEcccCcEE
Confidence            66654 443  357889999999999999999999999999999999999999999999998   999999999999999


Q ss_pred             eeecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCceeeeeE---eecCCCeeEecCCCcEEEEee-CCeEEEE
Q 023822          115 RYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLL---RVQGRPAAAYDDQGLVFAVAF-GGYIRMF  187 (276)
Q Consensus       115 ~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~-d~~i~~~  187 (276)
                      .+++...+.|++++|..||+ .+++++..|.+.+||++..+.+..+   |...+....+.|...+++++. |+.+++|
T Consensus       238 ~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~  315 (910)
T KOG1539|consen  238 MSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVW  315 (910)
T ss_pred             EEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEE
Confidence            99985569999999999998 6777777899999999988766655   444555555555555555444 5444444

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.91  E-value=1.1e-22  Score=162.92  Aligned_cols=249  Identities=12%  Similarity=0.159  Sum_probs=193.3

Q ss_pred             hccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccC----CeeeeeeeeeeeceEEEEEeccCCeEEEeccC
Q 023822           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA----ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN   97 (276)
Q Consensus        22 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~   97 (276)
                      ..+.....+.||.+.|..++|.|.|.+|++.+.|-+-|+|-.-.    ...+.+-+.|....+|+++-+....++++.. 
T Consensus       349 ~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAd-  427 (764)
T KOG1063|consen  349 TFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGAD-  427 (764)
T ss_pred             cceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeeccc-
Confidence            34455566789999999999999999999999999999987541    1234444667788999999887777778776 


Q ss_pred             CCCCceEEEEccC-------------------------------------------Cc----------------------
Q 023822           98 GWDESLRLLSLHD-------------------------------------------NK----------------------  112 (276)
Q Consensus        98 ~~d~~i~~~d~~~-------------------------------------------~~----------------------  112 (276)
                        ...+++|+...                                           +.                      
T Consensus       428 --EKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~  505 (764)
T KOG1063|consen  428 --EKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPT  505 (764)
T ss_pred             --ceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCCh
Confidence              78888887642                                           00                      


Q ss_pred             -----------eeeeecccCcceEEEEeccCCCEEEEeeCCC-----eEEEEeccCceeeeeE--eecCCCeeEecCCCc
Q 023822          113 -----------YLRYFKGHHDRVVSLSLCSSKDCFISGSLDR-----TVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGL  174 (276)
Q Consensus       113 -----------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~  174 (276)
                                 .++.+.+|...|.+++.+|+++++|+++...     .|++|+..+-...+.+  |.-.+..++|+|+++
T Consensus       506 EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~  585 (764)
T KOG1063|consen  506 EDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGR  585 (764)
T ss_pred             HHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCc
Confidence                       0111347888999999999999999998743     5999999988777766  555688999999998


Q ss_pred             EEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCC--cEEEEeecCCCCC
Q 023822          175 VFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG--TLLSTYNVKPVSR  251 (276)
Q Consensus       175 ~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~  251 (276)
                      +|.+.+ |+++.+|...............+.|..-|.++.|+|++.+++++|.|.+|++|.....  +.+..+... .+.
T Consensus       586 ~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~-~~~  664 (764)
T KOG1063|consen  586 YLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACL-KFS  664 (764)
T ss_pred             EEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchh-ccC
Confidence            887777 9999999986655444444457789899999999999999999999999999998877  555543322 478


Q ss_pred             CceEEEEECCC-----CcEEEEecCCCC
Q 023822          252 NSTLEASFSPE-----GMFVISGRVSPF  274 (276)
Q Consensus       252 ~~v~~~~~s~~-----g~~l~~~~~dg~  274 (276)
                      .+|+.++|.|-     +..++.|-+.|-
T Consensus       665 ~aVTAv~~~~~~~~e~~~~vavGle~Ge  692 (764)
T KOG1063|consen  665 LAVTAVAYLPVDHNEKGDVVAVGLEKGE  692 (764)
T ss_pred             CceeeEEeeccccccccceEEEEecccE
Confidence            89999999872     225677766653

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.4e-22  Score=148.41  Aligned_cols=192  Identities=15%  Similarity=0.159  Sum_probs=154.7

Q ss_pred             eEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeee
Q 023822           79 VDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL  158 (276)
Q Consensus        79 v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  158 (276)
                      ..++.|++.|.++++|+.   +|.|.+||+.+....+.+.+|..+|.+++|+++|+.|++++.|..|.+||+..+.+.+.
T Consensus        26 a~~~~Fs~~G~~lAvGc~---nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r  102 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCA---NGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR  102 (405)
T ss_pred             cceEEeccCcceeeeecc---CCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence            789999999999999999   99999999999999999999999999999999999999999999999999999999988


Q ss_pred             Ee-ecCCCeeEecCCC--cEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEEC
Q 023822          159 LR-VQGRPAAAYDDQG--LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDS  235 (276)
Q Consensus       159 ~~-~~~~~~~~~~~~~--~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  235 (276)
                      +. ..++..+.|+|..  +.+++-.+..-.+.++..+....+..-.-........+..|.+.|+++++|...|.+.++|.
T Consensus       103 irf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a  182 (405)
T KOG1273|consen  103 IRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA  182 (405)
T ss_pred             EEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence            84 4568889999865  44444446556666665432211111111111122334568999999999999999999999


Q ss_pred             CCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          236 FRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      .+.+++..++..  ....|..+.++..|+.|+.-+.|.++
T Consensus       183 ~t~e~vas~rit--s~~~IK~I~~s~~g~~liiNtsDRvI  220 (405)
T KOG1273|consen  183 ETLECVASFRIT--SVQAIKQIIVSRKGRFLIINTSDRVI  220 (405)
T ss_pred             chheeeeeeeec--hheeeeEEEEeccCcEEEEecCCceE
Confidence            999999998841  23789999999999999999888764

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=2.2e-23  Score=155.14  Aligned_cols=209  Identities=15%  Similarity=0.218  Sum_probs=158.2

Q ss_pred             cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccC---------------------------C----------
Q 023822           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA---------------------------A----------   66 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~---------------------------~----------   66 (276)
                      .....+++.|.+.|..+++..  ..+++++.|.+|+.|.++.                           |          
T Consensus        99 R~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R  176 (433)
T KOG0268|consen   99 RECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQR  176 (433)
T ss_pred             hhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeeccccc
Confidence            455678999999999999987  6788888999999887431                           1          


Q ss_pred             -eeeeeeeeeeeceEEEEEeccCCeEEEec-cCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCe
Q 023822           67 -TCLKTINSKKYGVDLVCFTSHPTTVIYSS-KNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRT  144 (276)
Q Consensus        67 -~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  144 (276)
                       .++..+.-....+.++.|+|....++.++ .   |+.|.+||++++.+++.+. -...-+.++|+|..-.|++|++|..
T Consensus       177 ~~Pv~smswG~Dti~svkfNpvETsILas~~s---DrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~n  252 (433)
T KOG0268|consen  177 DNPVSSMSWGADSISSVKFNPVETSILASCAS---DRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHN  252 (433)
T ss_pred             CCccceeecCCCceeEEecCCCcchheeeecc---CCceEEEecccCCccceee-eeccccceecCccccceeecccccc
Confidence             12222233334578889999877655554 5   9999999999999887654 2344578999998888999999999


Q ss_pred             EEEEeccCceeeeeE---eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcE
Q 023822          145 VLLWDQRAEKCQGLL---RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRL  220 (276)
Q Consensus       145 i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  220 (276)
                      ++.||++........   +...+..+.|+|.|+-+++++ |.+|++|..+.+....+.-.   ..-..|.++.||.|.+|
T Consensus       253 lY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht---kRMq~V~~Vk~S~Dsky  329 (433)
T KOG0268|consen  253 LYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT---KRMQHVFCVKYSMDSKY  329 (433)
T ss_pred             ceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH---hhhheeeEEEEeccccE
Confidence            999999976543333   555677899999998777777 99999999987653221111   12246899999999999


Q ss_pred             EEEeecCCcEEEEECCCCcEE
Q 023822          221 MLLTTMEGHIHVLDSFRGTLL  241 (276)
Q Consensus       221 l~~~~~dg~i~i~d~~~~~~~  241 (276)
                      +++||.|+.|++|...-.+.+
T Consensus       330 i~SGSdd~nvRlWka~Asekl  350 (433)
T KOG0268|consen  330 IISGSDDGNVRLWKAKASEKL  350 (433)
T ss_pred             EEecCCCcceeeeecchhhhc
Confidence            999999999999987654433

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.90  E-value=4.1e-23  Score=164.30  Aligned_cols=124  Identities=16%  Similarity=0.271  Sum_probs=106.8

Q ss_pred             cceeeccCCCcEEEEEEcC-CCCEEEEeecCCeEEEEEccCCeee------eeeeeeeeceEEEEEeccCCeEEEeccCC
Q 023822           26 VGMSFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATCL------KTINSKKYGVDLVCFTSHPTTVIYSSKNG   98 (276)
Q Consensus        26 ~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~~~   98 (276)
                      .+-.+.+|...|+.+.|+| +..+||+|+.|..|+||.+..+-..      ..+...+-.+.++.|+|....|+..+.  
T Consensus        71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a--  148 (1012)
T KOG1445|consen   71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGA--  148 (1012)
T ss_pred             ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEecc--
Confidence            5566789999999999999 6678999999999999999844211      223344567899999998887777776  


Q ss_pred             CCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccC
Q 023822           99 WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA  152 (276)
Q Consensus        99 ~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~  152 (276)
                       .|.+++||+.+++.+..+.+|.+.|.++.|+.||.+|++++.|..|+|||.+.
T Consensus       149 -~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa  201 (1012)
T KOG1445|consen  149 -HGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA  201 (1012)
T ss_pred             -CceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence             89999999999999999999999999999999999999999999999999763

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.90  E-value=1.4e-22  Score=156.88  Aligned_cols=229  Identities=11%  Similarity=0.157  Sum_probs=178.4

Q ss_pred             cEEEEEEcCCCCE-EEEeecCCeEEEEEccCCe---eeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCC
Q 023822           36 RISSMDFHKSSSY-LVTASDDESIRLYDVTAAT---CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN  111 (276)
Q Consensus        36 ~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~  111 (276)
                      .+.++.|+....+ +++.+.|..+++|.-. ++   ....-......-.|++......++++++.   .+.|+|||++..
T Consensus        36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~-g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~---~~~Vkiwdl~~k  111 (673)
T KOG4378|consen   36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKD-GKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQ---SGCVKIWDLRAK  111 (673)
T ss_pred             cceeeeccccceEEEeecCCceeEEEeccc-CCCCccceeeccccchHHHHhhhhcceeeeccCc---CceeeehhhHHH
Confidence            4899999886542 2344567889999743 33   11111111123445555556688999888   999999999977


Q ss_pred             ceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe---ecCCCeeEecCCCcEEEEee--CCeEEE
Q 023822          112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR---VQGRPAAAYDDQGLVFAVAF--GGYIRM  186 (276)
Q Consensus       112 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~--d~~i~~  186 (276)
                      .+.+.+++|...|+++.++-...+||+++..|.|.+..+.++.....+.   ...++.+.|+|..+++.+..  +|.|.+
T Consensus       112 l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtl  191 (673)
T KOG4378|consen  112 LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTL  191 (673)
T ss_pred             HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEE
Confidence            7888899999999999999999999999999999999999988777773   23356789999886654443  799999


Q ss_pred             EecccCCCCCeeeeeecCCCCCceEEEECCCC-cEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcE
Q 023822          187 FDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF  265 (276)
Q Consensus       187 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  265 (276)
                      ||+.....  + ......|..+...|+|+|.. .+|++.+.|..|.+||+...+....+.    ...+...++|+++|.+
T Consensus       192 wDv~g~sp--~-~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~----y~~Plstvaf~~~G~~  264 (673)
T KOG4378|consen  192 WDVQGMSP--I-FHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT----YSHPLSTVAFSECGTY  264 (673)
T ss_pred             EeccCCCc--c-cchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee----ecCCcceeeecCCceE
Confidence            99987543  1 33456788999999999954 677889999999999999888877776    6778999999999999


Q ss_pred             EEEecCCCCC
Q 023822          266 VISGRVSPFS  275 (276)
Q Consensus       266 l~~~~~dg~v  275 (276)
                      |+.|...|-+
T Consensus       265 L~aG~s~G~~  274 (673)
T KOG4378|consen  265 LCAGNSKGEL  274 (673)
T ss_pred             EEeecCCceE
Confidence            9999988753

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.90  E-value=4.4e-22  Score=149.00  Aligned_cols=207  Identities=16%  Similarity=0.233  Sum_probs=157.5

Q ss_pred             hccccceeeccCCCcEEEEEEcC-CCCEEEEeecCCeEEEEEccCCeee---eeeeeeeeceEEEEEeccCC-eEEEecc
Q 023822           22 QSMEVGMSFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATCL---KTINSKKYGVDLVCFTSHPT-TVIYSSK   96 (276)
Q Consensus        22 ~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~-~l~~~~~   96 (276)
                      ...+++.++.+|.+.=+.++||| ....|++|.--+.|++|...++.-.   ..+.+|...|-.++|+|..+ .|++++.
T Consensus       199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~  278 (440)
T KOG0302|consen  199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSC  278 (440)
T ss_pred             cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeec
Confidence            45678889999999999999999 3335888888889999999887543   33567999999999999765 5566666


Q ss_pred             CCCCCceEEEEccCCc--eeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCce---eeeeE--eecCCCeeEe
Q 023822           97 NGWDESLRLLSLHDNK--YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK---CQGLL--RVQGRPAAAY  169 (276)
Q Consensus        97 ~~~d~~i~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~--~~~~~~~~~~  169 (276)
                         |++|+|||++.+.  .....+.|.+.|+.+.|+..-.+|++|+.||+++|||+|+.+   ++..+  |..++.++.|
T Consensus       279 ---DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW  355 (440)
T KOG0302|consen  279 ---DGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEW  355 (440)
T ss_pred             ---CceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEe
Confidence               9999999999883  222337899999999999988899999999999999999654   44444  7788999999


Q ss_pred             cCCC--cEEEEeeCCeEEEEecccCCC---------------CCeeeeeecCCCCCceEEEECCCC-cEEEEeecCCcEE
Q 023822          170 DDQG--LVFAVAFGGYIRMFDARKYEK---------------GPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIH  231 (276)
Q Consensus       170 ~~~~--~~l~~~~d~~i~~~d~~~~~~---------------~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~  231 (276)
                      +|..  .+++++.|.+|.+||+..-..               ++..++. ......+..+.|+++- .+|++.+.|| +.
T Consensus       356 ~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFV-HqGQke~KevhWH~QiPG~lvsTa~dG-fn  433 (440)
T KOG0302|consen  356 HPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFV-HQGQKEVKEVHWHRQIPGLLVSTAIDG-FN  433 (440)
T ss_pred             ccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEE-ecchhHhhhheeccCCCCeEEEecccc-ee
Confidence            9854  555666699999999864321               1111222 2233568889999864 5677888887 34


Q ss_pred             EE
Q 023822          232 VL  233 (276)
Q Consensus       232 i~  233 (276)
                      ||
T Consensus       434 Vf  435 (440)
T KOG0302|consen  434 VF  435 (440)
T ss_pred             EE
Confidence            44

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.90  E-value=2.6e-22  Score=143.57  Aligned_cols=244  Identities=11%  Similarity=0.108  Sum_probs=176.1

Q ss_pred             ccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeee-eeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (276)
Q Consensus        25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i  103 (276)
                      .+...+++|.+.|+++.|..+++ |.+|..-|.|++|++.+.+....++ .+...|+.+.--|+ ..+.+-+.   |..+
T Consensus         5 dP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgR---d~~L   79 (323)
T KOG0322|consen    5 DPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGR---DPLL   79 (323)
T ss_pred             CCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCC---CceE
Confidence            35567889999999999988765 8899999999999999988888887 56677888888887 55666666   9999


Q ss_pred             EEEEccCCceeee-------------------------ec----------------------------ccCcceEEEEec
Q 023822          104 RLLSLHDNKYLRY-------------------------FK----------------------------GHHDRVVSLSLC  130 (276)
Q Consensus       104 ~~~d~~~~~~~~~-------------------------~~----------------------------~~~~~i~~~~~~  130 (276)
                      .+|++.-+..+..                         +.                            +..+.+.+..+.
T Consensus        80 ~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~  159 (323)
T KOG0322|consen   80 ILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD  159 (323)
T ss_pred             EEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence            9998865221100                         00                            011234454432


Q ss_pred             c-CCC--EEEEeeCCCeEEEEeccCceeeeeE------------eecCCCeeEecCCC-cEEEEeeCCeEEEEecccCCC
Q 023822          131 S-SKD--CFISGSLDRTVLLWDQRAEKCQGLL------------RVQGRPAAAYDDQG-LVFAVAFGGYIRMFDARKYEK  194 (276)
Q Consensus       131 ~-~~~--~l~~~~~d~~i~iwd~~~~~~~~~~------------~~~~~~~~~~~~~~-~~l~~~~d~~i~~~d~~~~~~  194 (276)
                      - .+.  ++++|.++|.+.+||+.++..+..+            +..++..+.+.+.- +=+..+-+..+..|.+.....
T Consensus       160 ~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~g  239 (323)
T KOG0322|consen  160 HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTG  239 (323)
T ss_pred             ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccC
Confidence            2 222  5677888999999999987433332            34445566665432 333344467788888765321


Q ss_pred             CCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCC
Q 023822          195 GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPF  274 (276)
Q Consensus       195 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~  274 (276)
                      .........-.+..+..+.+-||++.+|+++.|++||||+.++..++..++   .|.+.|++++|+|+...+|+++.|+.
T Consensus       240 slq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLk---yHsagvn~vAfspd~~lmAaaskD~r  316 (323)
T KOG0322|consen  240 SLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLK---YHSAGVNAVAFSPDCELMAAASKDAR  316 (323)
T ss_pred             cccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhh---hhhcceeEEEeCCCCchhhhccCCce
Confidence            111111122233468889999999999999999999999999999999999   68899999999999999999999998


Q ss_pred             CC
Q 023822          275 SS  276 (276)
Q Consensus       275 vs  276 (276)
                      +|
T Consensus       317 IS  318 (323)
T KOG0322|consen  317 IS  318 (323)
T ss_pred             EE
Confidence            75

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.90  E-value=1.5e-21  Score=151.30  Aligned_cols=239  Identities=12%  Similarity=0.094  Sum_probs=184.9

Q ss_pred             eeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEE
Q 023822           28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS  107 (276)
Q Consensus        28 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d  107 (276)
                      ....+|......++.+|+.++++|++.|+.+++|+  ..++..+. .-..++.++.|+|.+ .++.+..   .|...+.|
T Consensus       362 ~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~-~~~d~~~~~~fhpsg-~va~Gt~---~G~w~V~d  434 (626)
T KOG2106|consen  362 LTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTK-IIEDPAECADFHPSG-VVAVGTA---TGRWFVLD  434 (626)
T ss_pred             EEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEE-EecCceeEeeccCcc-eEEEeec---cceEEEEe
Confidence            34568999999999999999999999999999999  34443333 234578999999999 8999988   99999999


Q ss_pred             ccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeee-eE---eecCCCeeEecCCCcEEEEee-CC
Q 023822          108 LHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG-LL---RVQGRPAAAYDDQGLVFAVAF-GG  182 (276)
Q Consensus       108 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~---~~~~~~~~~~~~~~~~l~~~~-d~  182 (276)
                      .++...+..-.. ..++++++|+|+|.+||.|+.|+.|++|.+....... ..   +..++..+.|++|++++.+-+ |-
T Consensus       435 ~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~  513 (626)
T KOG2106|consen  435 TETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDY  513 (626)
T ss_pred             cccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCce
Confidence            999665554444 8899999999999999999999999999987543332 22   456778999999999999888 89


Q ss_pred             eEEEEecccCCCCC-ee-------------eeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCC
Q 023822          183 YIRMFDARKYEKGP-FD-------------IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP  248 (276)
Q Consensus       183 ~i~~~d~~~~~~~~-~~-------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  248 (276)
                      .|..|....-.... ..             ......+...+..++-+.+++++|+|.+.|.|++|...-.+....+....
T Consensus       514 eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~  593 (626)
T KOG2106|consen  514 EILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYG  593 (626)
T ss_pred             EEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeec
Confidence            99999543322100 00             00112345567777888888999999999999999976555544444344


Q ss_pred             CCCCceEEEEECCCCcEEEEecCCCC
Q 023822          249 VSRNSTLEASFSPEGMFVISGRVSPF  274 (276)
Q Consensus       249 ~~~~~v~~~~~s~~g~~l~~~~~dg~  274 (276)
                      +|.+-|.+++|..+...|++.+.|-.
T Consensus       594 ghs~~vt~V~Fl~~d~~li~tg~D~S  619 (626)
T KOG2106|consen  594 GHSSHVTNVAFLCKDSHLISTGKDTS  619 (626)
T ss_pred             cccceeEEEEEeeCCceEEecCCCce
Confidence            89999999999998888888777643

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.89  E-value=6.3e-22  Score=157.21  Aligned_cols=239  Identities=16%  Similarity=0.234  Sum_probs=167.1

Q ss_pred             cCCCcEEE--EEEcC---CCCEEEEeecCCeEEEEEccCCee------eeeeeeeeeceEEEEEeccCCeEEEeccCCCC
Q 023822           32 DYNGRISS--MDFHK---SSSYLVTASDDESIRLYDVTAATC------LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD  100 (276)
Q Consensus        32 ~h~~~v~~--~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d  100 (276)
                      .|.-++.-  ..|++   ....||.+.+||.|.++|......      +.....|.+.|.++.|.|....|++++.   |
T Consensus        45 ~~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasG---D  121 (720)
T KOG0321|consen   45 NDGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASG---D  121 (720)
T ss_pred             cCCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccC---C
Confidence            34444443  66765   345899999999999999865332      3455689999999999996677777776   9


Q ss_pred             CceEEEEccCCceeee--ecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCcee--------------------ee
Q 023822          101 ESLRLLSLHDNKYLRY--FKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKC--------------------QG  157 (276)
Q Consensus       101 ~~i~~~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~--------------------~~  157 (276)
                      .++++||+.+.+....  +.+|...+.+++|.|... .|++|+.||.|.|||++....                    .+
T Consensus       122 sT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpsk  201 (720)
T KOG0321|consen  122 STIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSK  201 (720)
T ss_pred             ceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCc
Confidence            9999999999988766  889999999999999665 899999999999999985331                    00


Q ss_pred             eE---------eecC----CCeeEecCCCcEEEEee-CCeEEEEecccCCC----CCeeeeeecCC---CCCceEEEECC
Q 023822          158 LL---------RVQG----RPAAAYDDQGLVFAVAF-GGYIRMFDARKYEK----GPFDIFSVGGD---ISDANVVKFSN  216 (276)
Q Consensus       158 ~~---------~~~~----~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~----~~~~~~~~~~~---~~~i~~~~~~~  216 (276)
                      .+         +...    +..+.|-.+..++.++. |+.|+|||++....    .+.....+..+   ...+.++....
T Consensus       202 p~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs  281 (720)
T KOG0321|consen  202 PLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS  281 (720)
T ss_pred             hhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC
Confidence            00         0001    12334444444444555 99999999997542    22222223333   33577788888


Q ss_pred             CCcEEEEeecCCcEEEEECCCCcE--EEEeecCCCCCCceEEEEECCCCcEEEEecCCCC
Q 023822          217 DGRLMLLTTMEGHIHVLDSFRGTL--LSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPF  274 (276)
Q Consensus       217 ~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~  274 (276)
                      .|.+|++.+.|+.|++|++.+...  +..+.... ...--..-..+||+.+|++|+.|+-
T Consensus       282 sGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~-~~sf~vks~lSpd~~~l~SgSsd~~  340 (720)
T KOG0321|consen  282 SGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKL-NSSFYVKSELSPDDCSLLSGSSDEQ  340 (720)
T ss_pred             CCCeEEEEecCCcEEEEeccccCcCchhhccCcc-cceeeeeeecCCCCceEeccCCCcc
Confidence            889999888899999999876433  33333211 1111222356899999999999875

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.89  E-value=5.5e-21  Score=140.66  Aligned_cols=232  Identities=14%  Similarity=0.228  Sum_probs=167.8

Q ss_pred             EEEEEEcCCCCEEEEeecCCeEEEEEccCC------------eeeeeee-eeeeceEEEEEe-------ccCCeEEEecc
Q 023822           37 ISSMDFHKSSSYLVTASDDESIRLYDVTAA------------TCLKTIN-SKKYGVDLVCFT-------SHPTTVIYSSK   96 (276)
Q Consensus        37 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~------------~~~~~~~-~~~~~v~~~~~~-------~~~~~l~~~~~   96 (276)
                      ...+.|+|||..|++-+.|..+.+|++...            +....++ .....|...+|-       |+..++++.+.
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr  131 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR  131 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence            446889999999999999999999998521            0111111 123356777775       56677888877


Q ss_pred             CCCCCceEEEEccCCceeeeecc--cCcc---eEEEEeccCCCEEEEeeCCCeEEEEec-cCceeee---eE-e-----e
Q 023822           97 NGWDESLRLLSLHDNKYLRYFKG--HHDR---VVSLSLCSSKDCFISGSLDRTVLLWDQ-RAEKCQG---LL-R-----V  161 (276)
Q Consensus        97 ~~~d~~i~~~d~~~~~~~~~~~~--~~~~---i~~~~~~~~~~~l~~~~~d~~i~iwd~-~~~~~~~---~~-~-----~  161 (276)
                         +.-|++||.-+++....+..  |...   ..+++|+|||.+|++|. ...|+++|+ |.++.-.   ++ +     .
T Consensus       132 ---~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~  207 (406)
T KOG2919|consen  132 ---DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQK  207 (406)
T ss_pred             ---cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhccccccc
Confidence               99999999999988776643  4333   46899999999888665 678999999 5443221   11 1     2


Q ss_pred             cCCCeeEecCCC-cEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeec-CCcEEEEECCC-
Q 023822          162 QGRPAAAYDDQG-LVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFR-  237 (276)
Q Consensus       162 ~~~~~~~~~~~~-~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~-  237 (276)
                      .-+.+++|+|.. ..+++++ ..++-+|.-.....    ...+.+|.+.|+.+.|.++|+.|++|+. |-.|..||++. 
T Consensus       208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p----l~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~  283 (406)
T KOG2919|consen  208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP----LQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS  283 (406)
T ss_pred             ceeeeeeccCCCCcceeeecccceeeeEecCCCCc----eeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence            335689999965 4777776 67777777666444    6667799999999999999999999875 67899999985 


Q ss_pred             CcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCCC
Q 023822          238 GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFSS  276 (276)
Q Consensus       238 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~vs  276 (276)
                      +.++..+..+.+....-.-+...|+|++|++|+.||.|+
T Consensus       284 ~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~  322 (406)
T KOG2919|consen  284 RDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVR  322 (406)
T ss_pred             cchhhhhhhhccCccceEEEecCCCCceeeccCCCccEE
Confidence            445556653332223333355679999999999999874

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.89  E-value=1e-19  Score=144.25  Aligned_cols=247  Identities=9%  Similarity=0.054  Sum_probs=162.2

Q ss_pred             ccccceeeccCCCcEEEEEEcCCCCEEEEee-cCCeEEEEEcc-CCee--eeeeeeeeeceEEEEEeccCCeEEEeccCC
Q 023822           23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTAS-DDESIRLYDVT-AATC--LKTINSKKYGVDLVCFTSHPTTVIYSSKNG   98 (276)
Q Consensus        23 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~-~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~   98 (276)
                      .++....+.. .+....++++|++++|++++ .++.|.+|++. +++.  +.... .......++++|+++.++++... 
T Consensus        24 ~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~-  100 (330)
T PRK11028         24 ALTLLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYN-  100 (330)
T ss_pred             ceeeeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcC-
Confidence            3445555543 35577899999999987664 57889999986 3332  22222 22346789999999999988763 


Q ss_pred             CCCceEEEEccCCc----eeeeecccCcceEEEEeccCCCEEEEee-CCCeEEEEeccCceeee-------eE-eecCCC
Q 023822           99 WDESLRLLSLHDNK----YLRYFKGHHDRVVSLSLCSSKDCFISGS-LDRTVLLWDQRAEKCQG-------LL-RVQGRP  165 (276)
Q Consensus        99 ~d~~i~~~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~-------~~-~~~~~~  165 (276)
                       ++.|.+|++.+..    .+..+. +......++++|+++++++++ .++.|.+||+++...+.       .. ......
T Consensus       101 -~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~  178 (330)
T PRK11028        101 -ANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPR  178 (330)
T ss_pred             -CCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCc
Confidence             8999999996432    222222 233467788999999876554 56999999998643221       11 233456


Q ss_pred             eeEecCCCcEEEEee--CCeEEEEecccCCCCCeeeeeecC------CCCCceEEEECCCCcEEEEeec-CCcEEEEECC
Q 023822          166 AAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDIFSVGG------DISDANVVKFSNDGRLMLLTTM-EGHIHVLDSF  236 (276)
Q Consensus       166 ~~~~~~~~~~l~~~~--d~~i~~~d~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~  236 (276)
                      .+.|+|+++++++..  ++.|.+||+...............      +......+.++|+|++++++.. ++.|.+|++.
T Consensus       179 ~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~  258 (330)
T PRK11028        179 HMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVS  258 (330)
T ss_pred             eEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEe
Confidence            899999999887776  799999999742111111111111      1122346899999999998854 6899999986


Q ss_pred             CCc-EEEEeecCCCCCCceEEEEECCCCcEEEEecC-CCCC
Q 023822          237 RGT-LLSTYNVKPVSRNSTLEASFSPEGMFVISGRV-SPFS  275 (276)
Q Consensus       237 ~~~-~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~v  275 (276)
                      ... .+...... ........++|+|||++|+++.. +++|
T Consensus       259 ~~~~~~~~~~~~-~~~~~p~~~~~~~dg~~l~va~~~~~~v  298 (330)
T PRK11028        259 EDGSVLSFEGHQ-PTETQPRGFNIDHSGKYLIAAGQKSHHI  298 (330)
T ss_pred             CCCCeEEEeEEE-eccccCCceEECCCCCEEEEEEccCCcE
Confidence            433 22211110 11234567899999999988775 6654

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.89  E-value=3.7e-22  Score=146.92  Aligned_cols=208  Identities=20%  Similarity=0.321  Sum_probs=160.6

Q ss_pred             cccceeeccCCCcEEEEEEcCC-CCEEEEeecCCeEEEEEccCCeeeeee---eeeeeceEEEEEeccCCeEEEeccCCC
Q 023822           24 MEVGMSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTAATCLKTI---NSKKYGVDLVCFTSHPTTVIYSSKNGW   99 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~~~~   99 (276)
                      .+....+.+|...|+.+.+.|+ .++++++|.|..|++|++++..++..+   .+|...|.++.|++++.++++++.   
T Consensus       125 ~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGm---  201 (385)
T KOG1034|consen  125 GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGM---  201 (385)
T ss_pred             hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCC---
Confidence            3455678899999999999995 478899999999999999999999887   578899999999999999999998   


Q ss_pred             CCceEEEEccCCceee----------------------------eecccCcceEEEEeccCCCEEEEeeCCCeEEEEecc
Q 023822          100 DESLRLLSLHDNKYLR----------------------------YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR  151 (276)
Q Consensus       100 d~~i~~~d~~~~~~~~----------------------------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~  151 (276)
                      |.+|++|++...+...                            +-.-|...|-|+.|-  |+++++=+-++.|..|...
T Consensus       202 Dhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pg  279 (385)
T KOG1034|consen  202 DHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPG  279 (385)
T ss_pred             cceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecc
Confidence            9999999998432100                            112366667777773  5788998889999999872


Q ss_pred             -Cceee----------eeEeecC-----CC--eeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEE
Q 023822          152 -AEKCQ----------GLLRVQG-----RP--AAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVV  212 (276)
Q Consensus       152 -~~~~~----------~~~~~~~-----~~--~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~  212 (276)
                       -.+.+          ..+..-.     +.  ..+++|-++.|+.+. .|.+++||++..+...............|...
T Consensus       280 kl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~  359 (385)
T KOG1034|consen  280 KLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQT  359 (385)
T ss_pred             hhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeee
Confidence             11111          1111111     11  345677788888888 79999999998776444444444556689999


Q ss_pred             EECCCCcEEEEeecCCcEEEEECC
Q 023822          213 KFSNDGRLMLLTTMEGHIHVLDSF  236 (276)
Q Consensus       213 ~~~~~~~~l~~~~~dg~i~i~d~~  236 (276)
                      +|+.||.+|+....|++|.-||..
T Consensus       360 sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  360 SFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             eecccCcEEEEEeCCCcEEEEEee
Confidence            999999999999999999999853

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=1.1e-22  Score=171.06  Aligned_cols=212  Identities=15%  Similarity=0.173  Sum_probs=167.1

Q ss_pred             hccccceeeccCCCcEEEEEEcCC-CCEEEEeecCCeEEEEEccCCeeeeeee--eeeeceEEEEEeccCCeEEEeccCC
Q 023822           22 QSMEVGMSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTAATCLKTIN--SKKYGVDLVCFTSHPTTVIYSSKNG   98 (276)
Q Consensus        22 ~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~~   98 (276)
                      .....+.+...|++.|..+.|++. +++||+|+.||.|.|||+.+.+.-....  .....|.+++|+..-.+++..+.. 
T Consensus       104 ~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~-  182 (1049)
T KOG0307|consen  104 ASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSP-  182 (1049)
T ss_pred             cchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCC-
Confidence            445667788899999999999995 5599999999999999998765444442  245679999999876665544432 


Q ss_pred             CCCceEEEEccCCceeeeecccCc--ceEEEEeccCCC-EEEEeeCCC---eEEEEeccCce-eeeeE--eecCCCeeEe
Q 023822           99 WDESLRLLSLHDNKYLRYFKGHHD--RVVSLSLCSSKD-CFISGSLDR---TVLLWDQRAEK-CQGLL--RVQGRPAAAY  169 (276)
Q Consensus        99 ~d~~i~~~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~-~l~~~~~d~---~i~iwd~~~~~-~~~~~--~~~~~~~~~~  169 (276)
                       +|.+.|||++..+++-.+..+.+  .+..++|+|+.. .+++++.|.   .|.+||+|... +.+.+  |..++.++.|
T Consensus       183 -sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsW  261 (1049)
T KOG0307|consen  183 -SGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSW  261 (1049)
T ss_pred             -CCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeecc
Confidence             88999999999988877766655  477899999865 677776654   59999998643 33433  7778899999


Q ss_pred             cCCC-cEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCc-EEEEeecCCcEEEEECCCCc
Q 023822          170 DDQG-LVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR-LMLLTTMEGHIHVLDSFRGT  239 (276)
Q Consensus       170 ~~~~-~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~  239 (276)
                      ++.+ ++++++. |+.|.+|+.++++.    +..+......+..+.|+|... .+++++-||.|.||.+....
T Consensus       262 c~~D~~lllSsgkD~~ii~wN~~tgEv----l~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  262 CPQDPRLLLSSGKDNRIICWNPNTGEV----LGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CCCCchhhhcccCCCCeeEecCCCceE----eeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            9977 5555555 99999999999775    666777778899999999765 78888999999999987654

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.88  E-value=6.4e-21  Score=138.34  Aligned_cols=231  Identities=12%  Similarity=0.121  Sum_probs=172.1

Q ss_pred             ccCCCcEEEEEEcCCC-----CEEEEeecCCeEEEEEccCCe--e--eeee-----eeeeeceEEEEEec-cCCeEEEec
Q 023822           31 RDYNGRISSMDFHKSS-----SYLVTASDDESIRLYDVTAAT--C--LKTI-----NSKKYGVDLVCFTS-HPTTVIYSS   95 (276)
Q Consensus        31 ~~h~~~v~~~~~~~~~-----~~l~~~~~d~~i~iwd~~~~~--~--~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~   95 (276)
                      -.|.-+++.+-|.|+.     .+||+++  -.+|+|.+...+  .  ...+     ..+..++++..|+. +.+++.+++
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS  170 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS  170 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence            3688999999999975     3566654  369999987321  1  1111     23456899999987 455666666


Q ss_pred             cCCCCCceEEEEccCCce---eeeecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCceeeeeEeec-----CCCe
Q 023822           96 KNGWDESLRLLSLHDNKY---LRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQ-----GRPA  166 (276)
Q Consensus        96 ~~~~d~~i~~~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~  166 (276)
                      -   |-+..+||++++..   ...+-.|..+|..++|...+. .|++.+.||++++||+|..+....+-..     +...
T Consensus       171 i---DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlR  247 (364)
T KOG0290|consen  171 I---DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLR  247 (364)
T ss_pred             c---cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCccee
Confidence            6   99999999998733   456778999999999998654 8999999999999999987765555222     2335


Q ss_pred             eEecCCC-cEEEEee--CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCC-CcEEEEeecCCcEEEEECCCCcE--
Q 023822          167 AAYDDQG-LVFAVAF--GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTL--  240 (276)
Q Consensus       167 ~~~~~~~-~~l~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~--  240 (276)
                      ++|+++. +++++-.  ...|.+.|+|....   .+..+..|.+.|+.++|.|. ...|++++.|..+.+||+...-.  
T Consensus       248 LswnkqDpnymATf~~dS~~V~iLDiR~P~t---pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~  324 (364)
T KOG0290|consen  248 LSWNKQDPNYMATFAMDSNKVVILDIRVPCT---PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPREN  324 (364)
T ss_pred             eccCcCCchHHhhhhcCCceEEEEEecCCCc---ceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccC
Confidence            7777765 4554443  48899999997543   46778899999999999996 47899999999999999875322  


Q ss_pred             ----EEEeecCCCCCCceEEEEECC-CCcEEEEecCCC
Q 023822          241 ----LSTYNVKPVSRNSTLEASFSP-EGMFVISGRVSP  273 (276)
Q Consensus       241 ----~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg  273 (276)
                          +..+.    ..+.|+.+.|++ .+.+++.+..+.
T Consensus       325 ~~dPilay~----a~~EVNqi~Ws~~~~Dwiai~~~kk  358 (364)
T KOG0290|consen  325 GEDPILAYT----AGGEVNQIQWSSSQPDWIAICFGKK  358 (364)
T ss_pred             CCCchhhhh----ccceeeeeeecccCCCEEEEEecCe
Confidence                22222    567899999995 567888877654

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.7e-21  Score=144.11  Aligned_cols=189  Identities=19%  Similarity=0.299  Sum_probs=144.9

Q ss_pred             CEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEec--cCCeEEEeccCCCCCceEEEEccCCceee--eecccC-
Q 023822           47 SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTS--HPTTVIYSSKNGWDESLRLLSLHDNKYLR--YFKGHH-  121 (276)
Q Consensus        47 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~~d~~i~~~d~~~~~~~~--~~~~~~-  121 (276)
                      +.+|++...|.|++||..+++.+..+++++..+..+.|..  ....+.+++.   ||+|++||++......  .+..++ 
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ss---DG~Vr~wD~Rs~~e~a~~~~~~~~~  117 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSS---DGTVRLWDIRSQAESARISWTQQSG  117 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEecc---CCeEEEEEeecchhhhheeccCCCC
Confidence            5688999999999999999999999999999999999987  4566777777   9999999999875443  334454 


Q ss_pred             cceEEEEeccCCCEEEEeeC----CCeEEEEeccCcee-eeeE---eecCCCeeEecCCC-cEEEEee-CCeEEEEeccc
Q 023822          122 DRVVSLSLCSSKDCFISGSL----DRTVLLWDQRAEKC-QGLL---RVQGRPAAAYDDQG-LVFAVAF-GGYIRMFDARK  191 (276)
Q Consensus       122 ~~i~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~-~~~~---~~~~~~~~~~~~~~-~~l~~~~-d~~i~~~d~~~  191 (276)
                      .+..+++..-.++.+++|..    +-.|.+||+|..+. +..+   |...++++.|+|+. .+|++|+ ||.+.+||++.
T Consensus       118 ~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~  197 (376)
T KOG1188|consen  118 TPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKK  197 (376)
T ss_pred             CcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCC
Confidence            46677777767788888764    66899999998776 5544   78889999999976 5666666 99999999987


Q ss_pred             CCCCCeeeeeecCCCCCceEEEECCCC-cEEEEeecCCcEEEEECCCCc
Q 023822          192 YEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGT  239 (276)
Q Consensus       192 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~  239 (276)
                      ..... .+...-.+...|..+.|..++ +.+.+-+......+|+++.+.
T Consensus       198 d~EeD-aL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~  245 (376)
T KOG1188|consen  198 DNEED-ALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS  245 (376)
T ss_pred             Ccchh-hHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence            54321 123333456678888888877 346667777778888876554

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.88  E-value=2.1e-20  Score=152.72  Aligned_cols=221  Identities=13%  Similarity=0.117  Sum_probs=155.9

Q ss_pred             eeeccCCCcEEEEEEcCCCCEEEEeecC---CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceE
Q 023822           28 MSFRDYNGRISSMDFHKSSSYLVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (276)
Q Consensus        28 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~  104 (276)
                      +.+..|...+.+++|+|||+.|+..+.+   ..|++||+.+++.... ....+....++|+|+++.|+++...  ++.+.
T Consensus       197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~~La~~~~~--~g~~~  273 (429)
T PRK01742        197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGSRLAFASSK--DGVLN  273 (429)
T ss_pred             eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCCEEEEEEec--CCcEE
Confidence            4566788899999999999999987654   4799999988754222 2122234578999999999887532  56554


Q ss_pred             --EEEccCCceeeeecccCcceEEEEeccCCCEEEEee-CCCeEEEEeccCce-eeeeEeecCCCeeEecCCCcEEEEee
Q 023822          105 --LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS-LDRTVLLWDQRAEK-CQGLLRVQGRPAAAYDDQGLVFAVAF  180 (276)
Q Consensus       105 --~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~  180 (276)
                        +||+.+++ ...+..+...+....|+|||+.|+..+ .++...+|+++... ....+.... ....|+|+++.++...
T Consensus       274 Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~-~~~~~SpDG~~ia~~~  351 (429)
T PRK01742        274 IYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG-YSAQISADGKTLVMIN  351 (429)
T ss_pred             EEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC-CCccCCCCCCEEEEEc
Confidence              55666555 445566777788999999999766554 57888888765422 122222222 4578999999888777


Q ss_pred             CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEEC--CCCcEEEEeecCCCCCCceEEEE
Q 023822          181 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDS--FRGTLLSTYNVKPVSRNSTLEAS  258 (276)
Q Consensus       181 d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~--~~~~~~~~~~~~~~~~~~v~~~~  258 (276)
                      ...+.+||+.+++..   ... ...  ....+.|+|+|++|++++.++.+.+|++  .+|+.+..+.   .+.+.+...+
T Consensus       352 ~~~i~~~Dl~~g~~~---~lt-~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~---~~~g~~~~p~  422 (429)
T PRK01742        352 GDNVVKQDLTSGSTE---VLS-STF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP---GSDGQVKFPA  422 (429)
T ss_pred             CCCEEEEECCCCCeE---Eec-CCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc---CCCCCCCCcc
Confidence            556777999875531   111 111  2356789999999999999998888875  4688888887   5778888999


Q ss_pred             ECCC
Q 023822          259 FSPE  262 (276)
Q Consensus       259 ~s~~  262 (276)
                      |+|-
T Consensus       423 wsp~  426 (429)
T PRK01742        423 WSPY  426 (429)
T ss_pred             cCCC
Confidence            9985

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=3.3e-21  Score=146.26  Aligned_cols=188  Identities=16%  Similarity=0.229  Sum_probs=149.8

Q ss_pred             EEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE
Q 023822           80 DLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL  159 (276)
Q Consensus        80 ~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  159 (276)
                      ..++|++++..+++++.   ||.+++|+..+...+.....|...|.++.|+||++.|++-+.| ..++|+.+++..+...
T Consensus       148 k~vaf~~~gs~latgg~---dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~  223 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGT---DGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK  223 (398)
T ss_pred             eEEEEcCCCCEeeeccc---cceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence            68999999999999999   9999999988888888888899999999999999999999999 8999999999666655


Q ss_pred             ee----cCCCeeEecCCC---c--EEEEee-CCeEEEEecccCCCCC-eeeeeecCCCCCceEEEECCCCcEEEEeecCC
Q 023822          160 RV----QGRPAAAYDDQG---L--VFAVAF-GGYIRMFDARKYEKGP-FDIFSVGGDISDANVVKFSNDGRLMLLTTMEG  228 (276)
Q Consensus       160 ~~----~~~~~~~~~~~~---~--~l~~~~-d~~i~~~d~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  228 (276)
                      ..    .....+.|+.++   .  +++... .+.|+.||+...+... ............|++++.+++|++++.|+.||
T Consensus       224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dG  303 (398)
T KOG0771|consen  224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDG  303 (398)
T ss_pred             CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCC
Confidence            21    123466777666   2  333333 4788888876544321 11222223345799999999999999999999


Q ss_pred             cEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCC
Q 023822          229 HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       229 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  273 (276)
                      .|.|++..+.+.++-.+.  .|...|+.+.|+||.+++++-+.|-
T Consensus       304 sVai~~~~~lq~~~~vk~--aH~~~VT~ltF~Pdsr~~~svSs~~  346 (398)
T KOG0771|consen  304 SVAIYDAKSLQRLQYVKE--AHLGFVTGLTFSPDSRYLASVSSDN  346 (398)
T ss_pred             cEEEEEeceeeeeEeehh--hheeeeeeEEEcCCcCcccccccCC
Confidence            999999998888877764  6889999999999999998876654

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=1.6e-20  Score=141.86  Aligned_cols=239  Identities=14%  Similarity=0.192  Sum_probs=175.9

Q ss_pred             eeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccC------Ceeeeeee-eeeeceEEEEEeccCCeEEEeccCCCC
Q 023822           28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA------ATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWD  100 (276)
Q Consensus        28 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~d  100 (276)
                      +.+.+|.+.|+++.|+.++++|++|+.|..+++|+++.      .+++.... .|...|.+++|...+..+++|..   +
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~---~  126 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGER---W  126 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCC---c
Confidence            44678999999999999999999999999999999863      34554443 34578999999999999999988   9


Q ss_pred             CceEEEEccCCceeeeecc--cCcceEEEEeccCCCEEEEeeCCCeEEEEeccCce-eeeeE----eecCCCeeEecCCC
Q 023822          101 ESLRLLSLHDNKYLRYFKG--HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK-CQGLL----RVQGRPAAAYDDQG  173 (276)
Q Consensus       101 ~~i~~~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~----~~~~~~~~~~~~~~  173 (276)
                      ++|...|+++.+.+..+..  ..+.|..+..+|..+.|++.+.++.|.+||.+... ....+    .......+.|+|..
T Consensus       127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~  206 (609)
T KOG4227|consen  127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET  206 (609)
T ss_pred             ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence            9999999999888776652  23489999999999999999999999999999765 33333    22334578888865


Q ss_pred             -cEEEEee-CCeEEEEecccCCCCCe----------------------------------------------eeeeecCC
Q 023822          174 -LVFAVAF-GGYIRMFDARKYEKGPF----------------------------------------------DIFSVGGD  205 (276)
Q Consensus       174 -~~l~~~~-d~~i~~~d~~~~~~~~~----------------------------------------------~~~~~~~~  205 (276)
                       .++++.. .+-+.+||.+......+                                              .++.....
T Consensus       207 P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N  286 (609)
T KOG4227|consen  207 PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHN  286 (609)
T ss_pred             ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCC
Confidence             4555555 68899999886431100                                              01111101


Q ss_pred             ------CCCceEEEECCCCcEEEEeecCCcEEEEECCCC-----------------------cEEEEeecCCCCCCceEE
Q 023822          206 ------ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG-----------------------TLLSTYNVKPVSRNSTLE  256 (276)
Q Consensus       206 ------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----------------------~~~~~~~~~~~~~~~v~~  256 (276)
                            ...+.+++|-.+- -+++|+.+-.|++|.+...                       +.+..++   +|.+-++.
T Consensus       287 ~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLr---GHRSv~NQ  362 (609)
T KOG4227|consen  287 PNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLR---GHRSVPNQ  362 (609)
T ss_pred             CCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEe---cccccccc
Confidence                  1134455565443 4889999999999987421                       1223344   79999999


Q ss_pred             EEECCCCcEEEEecCCC
Q 023822          257 ASFSPEGMFVISGRVSP  273 (276)
Q Consensus       257 ~~~s~~g~~l~~~~~dg  273 (276)
                      +.|+|...+|++.+-..
T Consensus       363 VRF~~H~~~l~SSGVE~  379 (609)
T KOG4227|consen  363 VRFSQHNNLLVSSGVEN  379 (609)
T ss_pred             eeecCCcceEeccchhh
Confidence            99999999888877543

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=1.3e-19  Score=132.47  Aligned_cols=224  Identities=15%  Similarity=0.149  Sum_probs=164.1

Q ss_pred             HHHhhccccceeeccCCCcEEEEEEcC--CCCEEEEeecCCeEEEEEccC---------CeeeeeeeeeeeceEEEEEec
Q 023822           18 EEILQSMEVGMSFRDYNGRISSMDFHK--SSSYLVTASDDESIRLYDVTA---------ATCLKTINSKKYGVDLVCFTS   86 (276)
Q Consensus        18 ~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~---------~~~~~~~~~~~~~v~~~~~~~   86 (276)
                      .....++......+.|.+.|..+.|.+  -|+.+|+++.|+++.||.-..         .....++......|+++.|.|
T Consensus        43 ~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP  122 (361)
T KOG2445|consen   43 TSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAP  122 (361)
T ss_pred             cCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecc
Confidence            344466788888999999999999965  589999999999999997521         123445566678899999999


Q ss_pred             c--CCeEEEeccCCCCCceEEEEccCCce------eeeec-------ccCcceEEEEeccC---CCEEEEeeCC-----C
Q 023822           87 H--PTTVIYSSKNGWDESLRLLSLHDNKY------LRYFK-------GHHDRVVSLSLCSS---KDCFISGSLD-----R  143 (276)
Q Consensus        87 ~--~~~l~~~~~~~~d~~i~~~d~~~~~~------~~~~~-------~~~~~i~~~~~~~~---~~~l~~~~~d-----~  143 (276)
                      .  |-.+++++.   ||.++||+....-.      ...++       .+..+..|+.|+|.   ..+|+.|+.+     +
T Consensus       123 ~hlGLklA~~~a---DG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~  199 (361)
T KOG2445|consen  123 KHLGLKLAAASA---DGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLN  199 (361)
T ss_pred             hhcceEEEEecc---CcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCcccc
Confidence            5  556777777   99999998654322      12222       35567789999974   4578888765     4


Q ss_pred             eEEEEeccCce----eeeeE--eecCCCeeEecCCC----cEEEEee-CCeEEEEecccCC----------------CCC
Q 023822          144 TVLLWDQRAEK----CQGLL--RVQGRPAAAYDDQG----LVFAVAF-GGYIRMFDARKYE----------------KGP  196 (276)
Q Consensus       144 ~i~iwd~~~~~----~~~~~--~~~~~~~~~~~~~~----~~l~~~~-d~~i~~~d~~~~~----------------~~~  196 (276)
                      .++||......    .+..+  +..+++.++|.|.-    .++++++ || |+||.++...                .+.
T Consensus       200 ~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v  278 (361)
T KOG2445|consen  200 KVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPV  278 (361)
T ss_pred             ceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccce
Confidence            78888765432    22233  56678899999963    6777777 78 9999998421                111


Q ss_pred             eeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECC---CCcEEEEee
Q 023822          197 FDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF---RGTLLSTYN  245 (276)
Q Consensus       197 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~  245 (276)
                      ..+..+..|..+|..+.|+-.|..|++.+.||.||+|...   ..++...+.
T Consensus       279 ~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~  330 (361)
T KOG2445|consen  279 EKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLK  330 (361)
T ss_pred             EEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEe
Confidence            2234477899999999999999999999999999999753   234555554

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.87  E-value=5.8e-21  Score=152.25  Aligned_cols=202  Identities=16%  Similarity=0.223  Sum_probs=156.0

Q ss_pred             CCcEEEEEEcC-CCCEEEEeecCCeEEEEEccCC-------eeeeeeeeeeeceEEEEEecc-CCeEEEeccCCCCCceE
Q 023822           34 NGRISSMDFHK-SSSYLVTASDDESIRLYDVTAA-------TCLKTINSKKYGVDLVCFTSH-PTTVIYSSKNGWDESLR  104 (276)
Q Consensus        34 ~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~d~~i~  104 (276)
                      ...|+.+.|.| |...||+++.||.|++|.+..+       .+...+..|...|+.+.|+|- ...|++++.   |-+|+
T Consensus       627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asy---d~Ti~  703 (1012)
T KOG1445|consen  627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASY---DSTIE  703 (1012)
T ss_pred             CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhc---cceee
Confidence            45799999999 8889999999999999998743       345667889999999999995 456777777   99999


Q ss_pred             EEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE----eecCCCeeEecCCCcEEEEee
Q 023822          105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL----RVQGRPAAAYDDQGLVFAVAF  180 (276)
Q Consensus       105 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~  180 (276)
                      +||+.+++....+.+|.+.|..++|+|+|+.+++.+.||+|++|+.++.+....-    .......+.|.-+|+++++..
T Consensus       704 lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~G  783 (1012)
T KOG1445|consen  704 LWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVG  783 (1012)
T ss_pred             eeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEec
Confidence            9999999999999999999999999999999999999999999998876533222    112233677888887766554


Q ss_pred             -----CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCC-cEEEEeecCCcEEEEECCCCc
Q 023822          181 -----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGT  239 (276)
Q Consensus       181 -----d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~  239 (276)
                           +.+|.+||.++....++....+.....+ .--.+.+|. -++++|-.|..|.+|.+-...
T Consensus       784 fdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~-LvP~YD~Ds~~lfltGKGD~~v~~yEv~~es  847 (1012)
T KOG1445|consen  784 FDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSP-LVPHYDYDSNVLFLTGKGDRFVNMYEVIYES  847 (1012)
T ss_pred             ccccchhhhhhhhhhhccCCcceeeeecccCcc-ccccccCCCceEEEecCCCceEEEEEecCCC
Confidence                 3789999998866555554444333221 122345554 456777789999999975443

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.87  E-value=2e-18  Score=141.18  Aligned_cols=237  Identities=26%  Similarity=0.429  Sum_probs=188.0

Q ss_pred             eeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCe-eeeeeeeeee-ceEEEEE-eccCCeEEEeccCCCCCceEE
Q 023822           29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT-CLKTINSKKY-GVDLVCF-TSHPTTVIYSSKNGWDESLRL  105 (276)
Q Consensus        29 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~-~v~~~~~-~~~~~~l~~~~~~~~d~~i~~  105 (276)
                      .+..|...+.++.+.+.+..++.++.|+.+.+|+...+. ....+..... .+..+.+ .+++..++.... ..++.+.+
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~~~  138 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASS-SLDGTVKL  138 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccC-CCCccEEE
Confidence            467899999999999999999999999999999998876 6666665433 6777777 777773333322 12889999


Q ss_pred             EEccC-CceeeeecccCcceEEEEeccCCCEEEEeeC-CCeEEEEeccCceeeeeE--eecCCCeeEecCCCc-EEEE-e
Q 023822          106 LSLHD-NKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGL-VFAV-A  179 (276)
Q Consensus       106 ~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~-~l~~-~  179 (276)
                      |+... ......+..|...|..++|+|++..+++++. |+.+++|++........+  +...+..++++|++. ++++ +
T Consensus       139 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  218 (466)
T COG2319         139 WDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS  218 (466)
T ss_pred             EEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence            99998 7778888899999999999999998888886 999999999987777666  456688999999997 5555 3


Q ss_pred             eCCeEEEEecccCCCCCeeee-eecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcE-EEEeecCCCCCCceEEE
Q 023822          180 FGGYIRMFDARKYEKGPFDIF-SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL-LSTYNVKPVSRNSTLEA  257 (276)
Q Consensus       180 ~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~  257 (276)
                      .|+.|++||...+..    .. .+..|.... ...|+|++.++++++.|+.+++|+...... +..+.   .|...+.++
T Consensus       219 ~d~~i~~wd~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~---~~~~~v~~~  290 (466)
T COG2319         219 SDGTIRLWDLSTGKL----LRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLS---GHSSSVLSV  290 (466)
T ss_pred             CCCcEEEEECCCCcE----EeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEe---cCCccEEEE
Confidence            499999998774332    22 455565554 338999998899999999999999987665 44443   578999999


Q ss_pred             EECCCCcEEEEecCCCC
Q 023822          258 SFSPEGMFVISGRVSPF  274 (276)
Q Consensus       258 ~~s~~g~~l~~~~~dg~  274 (276)
                      .|+|++..+++++.|+.
T Consensus       291 ~~~~~~~~~~~~~~d~~  307 (466)
T COG2319         291 AFSPDGKLLASGSSDGT  307 (466)
T ss_pred             EECCCCCEEEEeeCCCc
Confidence            99999988888888754

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=7.4e-21  Score=149.11  Aligned_cols=227  Identities=19%  Similarity=0.285  Sum_probs=168.6

Q ss_pred             ehHHHhhccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeee-eeeeeceEEEEEecc--CCeEE
Q 023822           16 LSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTI-NSKKYGVDLVCFTSH--PTTVI   92 (276)
Q Consensus        16 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~l~   92 (276)
                      ..+..++.+...+.|.||++.|+|++|+.+|.+|++|+.|-.+.|||....+++..+ .+|...|.++.|-|.  ++.++
T Consensus        32 ~~s~~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~  111 (758)
T KOG1310|consen   32 GNSTWLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVL  111 (758)
T ss_pred             cccHHHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEE
Confidence            344556778888899999999999999999999999999999999999887777766 578899999999984  45666


Q ss_pred             EeccCCCCCceEEEEccC----------CceeeeecccCcceEEEEeccCC-CEEEEeeCCCeEEEEeccCceeee-e--
Q 023822           93 YSSKNGWDESLRLLSLHD----------NKYLRYFKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQG-L--  158 (276)
Q Consensus        93 ~~~~~~~d~~i~~~d~~~----------~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~-~--  158 (276)
                      ++..   |..|+++|+..          .+....+..|...|..++-.|++ +.+.++++||+|+-||++....-. .  
T Consensus       112 sgAg---Dk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~  188 (758)
T KOG1310|consen  112 SGAG---DKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDED  188 (758)
T ss_pred             eccC---cceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccc
Confidence            6666   99999999974          23445567899999999999988 689999999999999999742111 1  


Q ss_pred             ----E-----eecCCCeeEecCCC-cEEEEee-CCeEEEEecccCCC-----------CC----eeeeeecCCC------
Q 023822          159 ----L-----RVQGRPAAAYDDQG-LVFAVAF-GGYIRMFDARKYEK-----------GP----FDIFSVGGDI------  206 (276)
Q Consensus       159 ----~-----~~~~~~~~~~~~~~-~~l~~~~-d~~i~~~d~~~~~~-----------~~----~~~~~~~~~~------  206 (276)
                          +     ..-...++.++|.. .+|++|. |-..++||.+...+           ++    ...+-.++|.      
T Consensus       189 ~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn  268 (758)
T KOG1310|consen  189 CPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGN  268 (758)
T ss_pred             ccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccc
Confidence                1     11224488899876 5566655 89999999543211           01    0011111111      


Q ss_pred             -----CCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEee
Q 023822          207 -----SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  245 (276)
Q Consensus       207 -----~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  245 (276)
                           ..++.++|+|+|..|++.-..-.|+++|+..++....+.
T Consensus       269 ~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~  312 (758)
T KOG1310|consen  269 LDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYF  312 (758)
T ss_pred             cccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence                 124568899999877776556689999998887765554

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.86  E-value=4.3e-19  Score=130.40  Aligned_cols=232  Identities=13%  Similarity=0.165  Sum_probs=166.9

Q ss_pred             cEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCC----CCCceEEEEccCC
Q 023822           36 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG----WDESLRLLSLHDN  111 (276)
Q Consensus        36 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~----~d~~i~~~d~~~~  111 (276)
                      ...+++|+.|..-+++|..+| .+||+.+.-+.....+.+.+.+.-+...-..++++..+.++    ....|.|||=...
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~   85 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE   85 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence            345599999999999987776 99999886544333333322222222222445555444321    1357999997777


Q ss_pred             ceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEecc-CceeeeeEee--cCCCeeEecCC--CcEEEEee--CCeE
Q 023822          112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR-AEKCQGLLRV--QGRPAAAYDDQ--GLVFAVAF--GGYI  184 (276)
Q Consensus       112 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~--~~~~~~~~~~~--~~~l~~~~--d~~i  184 (276)
                      +++.++. ...+|.++.+.++  .+++.- .++|++|... +.+.++.+..  .+.-.+++.|.  ..+|+.-+  -|+|
T Consensus        86 ~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv  161 (346)
T KOG2111|consen   86 RCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV  161 (346)
T ss_pred             cEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence            7777776 6788999999764  455544 6789999987 5566665522  12224444443  35555555  5999


Q ss_pred             EEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCc-EEEEECCCCcEEEEeecCCCCCCceEEEEECCCC
Q 023822          185 RMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGH-IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG  263 (276)
Q Consensus       185 ~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  263 (276)
                      ++-|+...+..  .......|.+.|.+++++-+|..+|++|..|+ |||||..+|+++.+++... ....|.+++|||++
T Consensus       162 Qi~dL~~~~~~--~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~-d~A~iy~iaFSp~~  238 (346)
T KOG2111|consen  162 QIVDLASTKPN--APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV-DRADIYCIAFSPNS  238 (346)
T ss_pred             EEEEhhhcCcC--CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC-chheEEEEEeCCCc
Confidence            99999875542  23456789999999999999999999999997 8999999999999998543 55789999999999


Q ss_pred             cEEEEecCCCCC
Q 023822          264 MFVISGRVSPFS  275 (276)
Q Consensus       264 ~~l~~~~~dg~v  275 (276)
                      .+||++|+.||+
T Consensus       239 s~LavsSdKgTl  250 (346)
T KOG2111|consen  239 SWLAVSSDKGTL  250 (346)
T ss_pred             cEEEEEcCCCeE
Confidence            999999999986

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.86  E-value=3.3e-20  Score=136.27  Aligned_cols=199  Identities=15%  Similarity=0.150  Sum_probs=158.4

Q ss_pred             eeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCc---eeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEE
Q 023822           72 INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK---YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLW  148 (276)
Q Consensus        72 ~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw  148 (276)
                      +.....+|+|.+|+++...++++..   ...|.||......   ...+++.|...|+.++|+|..+.|++|+.|..-++|
T Consensus         6 ~~~~~~pitchAwn~drt~iAv~~~---~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw   82 (361)
T KOG1523|consen    6 FHRLLEPITCHAWNSDRTQIAVSPN---NHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVW   82 (361)
T ss_pred             eeeccCceeeeeecCCCceEEeccC---CceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccc
Confidence            3334568999999999999999987   8899999987654   577889999999999999999999999999999999


Q ss_pred             eccC-ceeeeeE----eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEE
Q 023822          149 DQRA-EKCQGLL----RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLML  222 (276)
Q Consensus       149 d~~~-~~~~~~~----~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  222 (276)
                      .... ++-..++    ......++.|+|.++.+++++ ...|.+|-++.....-........+.+.|+++.|+|++-+|+
T Consensus        83 ~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLla  162 (361)
T KOG1523|consen   83 TQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLA  162 (361)
T ss_pred             ccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceec
Confidence            9843 3333332    344577999999998888888 688899988765432222223345567899999999999999


Q ss_pred             EeecCCcEEEEECC------------------CCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCCC
Q 023822          223 LTTMEGHIHVLDSF------------------RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFSS  276 (276)
Q Consensus       223 ~~~~dg~i~i~d~~------------------~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~vs  276 (276)
                      +|+.|+.+|+|...                  -|+++.++.   ...+.+..+.|+|+|..|+-.+.|++|+
T Consensus       163 aGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~---~~ggwvh~v~fs~sG~~lawv~Hds~v~  231 (361)
T KOG1523|consen  163 AGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS---SSGGWVHGVLFSPSGNRLAWVGHDSTVS  231 (361)
T ss_pred             ccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc---cCCCceeeeEeCCCCCEeeEecCCCceE
Confidence            99999999999742                  133344443   3678899999999999999999998874

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.86  E-value=9.7e-21  Score=148.07  Aligned_cols=189  Identities=16%  Similarity=0.231  Sum_probs=154.6

Q ss_pred             cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i  103 (276)
                      .+..+.+..|.+.|.|-.|+|||.-|+++++||.|++|. .+|....++-....+|.|++|.|+.+.++.+.    .+.+
T Consensus        94 ~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~----g~h~  168 (737)
T KOG1524|consen   94 ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ----GGHI  168 (737)
T ss_pred             chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEec----CCeE
Confidence            344566788999999999999999999999999999998 46666556666677899999999999988887    6788


Q ss_pred             EEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEeeCC
Q 023822          104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAFGG  182 (276)
Q Consensus       104 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~d~  182 (276)
                      .+=.+..+..+-.++.|.+-|.++.|++.++++++|++|-+.++||-........- +..++.+++|+|+ +.++.++-+
T Consensus       169 ~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n  247 (737)
T KOG1524|consen  169 SIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSYN  247 (737)
T ss_pred             EEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeeeeee
Confidence            88888777777889999999999999999999999999999999997654433333 7888999999999 666665544


Q ss_pred             eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEE
Q 023822          183 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL  233 (276)
Q Consensus       183 ~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  233 (276)
                      ++++=               ....+.|..++||+||..++.|...|.+.+-
T Consensus       248 t~R~~---------------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  248 TARFS---------------SPRVGSIFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             eeeec---------------CCCccceEEEEEcCCCceeeccccCceEEEe
Confidence            44411               1233578889999999999999998876653

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=1.8e-20  Score=142.31  Aligned_cols=193  Identities=16%  Similarity=0.167  Sum_probs=155.0

Q ss_pred             EEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeee
Q 023822           38 SSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF  117 (276)
Q Consensus        38 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~  117 (276)
                      .+++|+.+|..|++++.||++|||+..+...+.....|...|.++.|+||++.|++.+.   | ..+||+.+++..+...
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~---d-~~~VW~~~~g~~~a~~  223 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGA---D-SARVWSVNTGAALARK  223 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecC---C-ceEEEEeccCchhhhc
Confidence            78999999999999999999999999888888888889999999999999999999997   7 9999999999766655


Q ss_pred             cc--cCcceEEEEeccCC---CE--EEEeeCCCeEEEEeccCcee------eeeE-eecCCCeeEecCCCcEEEEee-CC
Q 023822          118 KG--HHDRVVSLSLCSSK---DC--FISGSLDRTVLLWDQRAEKC------QGLL-RVQGRPAAAYDDQGLVFAVAF-GG  182 (276)
Q Consensus       118 ~~--~~~~i~~~~~~~~~---~~--l~~~~~d~~i~iwd~~~~~~------~~~~-~~~~~~~~~~~~~~~~l~~~~-d~  182 (276)
                      ..  .+.....+.|+.++   .+  ++....-+.|+.||+....-      .+.+ ....+.+++.+++|++++.++ ||
T Consensus       224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dG  303 (398)
T KOG0771|consen  224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDG  303 (398)
T ss_pred             CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCC
Confidence            42  23346677888776   33  33333456677777653322      1112 445788999999999999999 99


Q ss_pred             eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCC
Q 023822          183 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR  237 (276)
Q Consensus       183 ~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  237 (276)
                      .|.+++..+.+.   ..+....|...|+.+.|+|+.+++++.+.|....+..+.-
T Consensus       304 sVai~~~~~lq~---~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  304 SVAIYDAKSLQR---LQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             cEEEEEeceeee---eEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            999999987553   2445567888999999999999999999999888887643

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=1.3e-18  Score=123.52  Aligned_cols=220  Identities=18%  Similarity=0.296  Sum_probs=162.3

Q ss_pred             cceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCee------eeee--ee-----eeeceEEEEEeccCCeEE
Q 023822           26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATC------LKTI--NS-----KKYGVDLVCFTSHPTTVI   92 (276)
Q Consensus        26 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~------~~~~--~~-----~~~~v~~~~~~~~~~~l~   92 (276)
                      ++...++|.++|+.++|.  ..+|++|+ ||.|+=|.......      +-+.  ..     .-..|+++...|..+.++
T Consensus        54 ~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~  130 (325)
T KOG0649|consen   54 KIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL  130 (325)
T ss_pred             ceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE
Confidence            344558999999999998  35677765 59999888753321      1111  11     123588999999888888


Q ss_pred             EeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecC---------
Q 023822           93 YSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG---------  163 (276)
Q Consensus        93 ~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---------  163 (276)
                      .++.   |+.++-||+++|+..+++++|++.|.++.--.....+++|++||++++||++++++++.+....         
T Consensus       131 ~AgG---D~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~  207 (325)
T KOG0649|consen  131 FAGG---DGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDW  207 (325)
T ss_pred             EecC---CeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCccc
Confidence            8876   9999999999999999999999999999886666689999999999999999999998883221         


Q ss_pred             -CCeeEecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEE
Q 023822          164 -RPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS  242 (276)
Q Consensus       164 -~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  242 (276)
                       ....+..-+..+++++....+.+|.++..+.  ..++.++   .++..+.|..+  .+++++..+.|.-|.+ +|.+..
T Consensus       208 g~wigala~~edWlvCGgGp~lslwhLrsse~--t~vfpip---a~v~~v~F~~d--~vl~~G~g~~v~~~~l-~Gvl~a  279 (325)
T KOG0649|consen  208 GKWIGALAVNEDWLVCGGGPKLSLWHLRSSES--TCVFPIP---ARVHLVDFVDD--CVLIGGEGNHVQSYTL-NGVLQA  279 (325)
T ss_pred             CceeEEEeccCceEEecCCCceeEEeccCCCc--eEEEecc---cceeEeeeecc--eEEEeccccceeeeee-ccEEEE
Confidence             1135666777899999999999999998654  3344544   35777888654  5777888888999985 455555


Q ss_pred             EeecCCCCCCceEEEEECCC
Q 023822          243 TYNVKPVSRNSTLEASFSPE  262 (276)
Q Consensus       243 ~~~~~~~~~~~v~~~~~s~~  262 (276)
                      ...   ......++..|+..
T Consensus       280 ~ip---~~s~~c~s~s~~~~  296 (325)
T KOG0649|consen  280 NIP---VESTACYSASWQTS  296 (325)
T ss_pred             ecc---CCccceeeecccCC
Confidence            444   23334455555433

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.86  E-value=2.6e-19  Score=131.60  Aligned_cols=228  Identities=14%  Similarity=0.163  Sum_probs=176.7

Q ss_pred             eccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCC---eeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEE
Q 023822           30 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA---TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL  106 (276)
Q Consensus        30 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~  106 (276)
                      +.--..+|+|.+|++|...+|.+.....|.||.....   +...++..|...|+.+.|+|..+.|++++.   |..-++|
T Consensus         6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~---drnayVw   82 (361)
T KOG1523|consen    6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSH---DRNAYVW   82 (361)
T ss_pred             eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccC---CCCcccc
Confidence            3344679999999999999999999999999998754   467888999999999999999999999998   9999999


Q ss_pred             EccCC---ceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCcee------eeeEeecCCCeeEecCCCcEEE
Q 023822          107 SLHDN---KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC------QGLLRVQGRPAAAYDDQGLVFA  177 (276)
Q Consensus       107 d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~l~  177 (276)
                      ....+   ++...+..++...+++.|+|.++.|++|+.-..|.+|-++...-      ++.-....+.++.|+|++-+++
T Consensus        83 ~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLla  162 (361)
T KOG1523|consen   83 TQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLA  162 (361)
T ss_pred             ccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceec
Confidence            98433   45556677999999999999999999999999999988775432      2222455678999999999998


Q ss_pred             Eee-CCeEEEEecccC--C----------CCCee--eeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCc-EE
Q 023822          178 VAF-GGYIRMFDARKY--E----------KGPFD--IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT-LL  241 (276)
Q Consensus       178 ~~~-d~~i~~~d~~~~--~----------~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~  241 (276)
                      .++ |+..++|..--.  +          +.++-  +.......+.+..+.|+|+|..|+-.+.|..+.+-|..... .+
T Consensus       163 aGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v  242 (361)
T KOG1523|consen  163 AGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERV  242 (361)
T ss_pred             ccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhc
Confidence            888 999999874211  1          01111  12222456789999999999999999999999999976554 33


Q ss_pred             EEeecCCCCCCceEEEEECCCC
Q 023822          242 STYNVKPVSRNSTLEASFSPEG  263 (276)
Q Consensus       242 ~~~~~~~~~~~~v~~~~~s~~g  263 (276)
                      ....   ...-+..++.|-.+.
T Consensus       243 ~~~~---~~~lP~ls~~~ise~  261 (361)
T KOG1523|consen  243 QSVA---TAQLPLLSVSWISEN  261 (361)
T ss_pred             cchh---hccCCceeeEeecCC
Confidence            3333   223566667665443

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=1.8e-19  Score=131.79  Aligned_cols=189  Identities=13%  Similarity=0.168  Sum_probs=145.9

Q ss_pred             eeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEE
Q 023822           28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS  107 (276)
Q Consensus        28 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d  107 (276)
                      ..+..|..+|.|+.+++....+++|+.|++|++||.........+...+ .|.++..  .+..|++|+.   +..+.+||
T Consensus        88 ~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v--~g~~LvVg~~---~r~v~iyD  161 (323)
T KOG1036|consen   88 DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDV--SGNRLVVGTS---DRKVLIYD  161 (323)
T ss_pred             eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCc-eEEEEec--cCCEEEEeec---CceEEEEE
Confidence            4466799999999999988899999999999999988655555554433 7887777  6778899887   99999999


Q ss_pred             ccCCceeeee--cccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCce----eeeeE-----------eecCCCeeEec
Q 023822          108 LHDNKYLRYF--KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK----CQGLL-----------RVQGRPAAAYD  170 (276)
Q Consensus       108 ~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~----~~~~~-----------~~~~~~~~~~~  170 (276)
                      +++.....+.  ...+-.+.++++-|++.-++.++-||+|.+=.++..+    ....+           ...+++.++|+
T Consensus       162 LRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fh  241 (323)
T KOG1036|consen  162 LRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFH  241 (323)
T ss_pred             cccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEec
Confidence            9987654322  2244578999999988889999999998876655441    11122           23457799999


Q ss_pred             CCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeec
Q 023822          171 DQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM  226 (276)
Q Consensus       171 ~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  226 (276)
                      |-...|+++. ||.|.+||+.+.+.    +..+......|.+++|+.+|..||.++.
T Consensus       242 p~~~tfaTgGsDG~V~~Wd~~~rKr----l~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  242 PIHGTFATGGSDGIVNIWDLFNRKR----LKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             cccceEEecCCCceEEEccCcchhh----hhhccCCCCceEEEEeccCCCeEEEEec
Confidence            9866666665 99999999988664    5555555667999999999999999873

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.85  E-value=1.1e-17  Score=136.87  Aligned_cols=242  Identities=25%  Similarity=0.401  Sum_probs=183.8

Q ss_pred             ceeeccCC-CcEEEEEE-cCCCC-EEEEeec-CCeEEEEEccC-CeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCC
Q 023822           27 GMSFRDYN-GRISSMDF-HKSSS-YLVTASD-DESIRLYDVTA-ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE  101 (276)
Q Consensus        27 ~~~~~~h~-~~v~~~~~-~~~~~-~l~~~~~-d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~  101 (276)
                      ...+.++. ..+..+.+ ++++. .++..+. |+.+.+|+... ......+..|...+..+.|+|++..++.+..  .++
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~  178 (466)
T COG2319         101 IKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS--LDG  178 (466)
T ss_pred             EEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC--CCC
Confidence            34444433 36777777 78777 5555444 99999999987 7888889999999999999999998777763  289


Q ss_pred             ceEEEEccCCceeeeecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCceeee-eEeecCCC-eeEecCCCcEEEE
Q 023822          102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQG-LLRVQGRP-AAAYDDQGLVFAV  178 (276)
Q Consensus       102 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~-~~~~~~~~~~l~~  178 (276)
                      .+++|++..++.+..+..|...+.+++|+|++. .+++++.|+.|++||...+.... .+..+... ...|++++.+++.
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (466)
T COG2319         179 TIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLAS  258 (466)
T ss_pred             ceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEE
Confidence            999999999888889999999999999999998 55565999999999988776666 34222211 3379999866665


Q ss_pred             ee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEE
Q 023822          179 AF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA  257 (276)
Q Consensus       179 ~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~  257 (276)
                      +. |+.+++|+.+.... .  ......|...+.++.|+|++..+++++.|+.+.+|+..+........ ...|...+..+
T Consensus       259 ~~~d~~~~~~~~~~~~~-~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  334 (466)
T COG2319         259 GSSDGTIRLWDLRSSSS-L--LRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT-LKGHEGPVSSL  334 (466)
T ss_pred             ecCCCcEEEeeecCCCc-E--EEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee-ecccCCceEEE
Confidence            55 99999999987554 1  22225678899999999988888888888889999988887766654 11366679999


Q ss_pred             EECCCCcEEEEe-cCCCC
Q 023822          258 SFSPEGMFVISG-RVSPF  274 (276)
Q Consensus       258 ~~s~~g~~l~~~-~~dg~  274 (276)
                      .|.+++..++.+ ..|+.
T Consensus       335 ~~~~~~~~~~~~~~~d~~  352 (466)
T COG2319         335 SFSPDGSLLVSGGSDDGT  352 (466)
T ss_pred             EECCCCCEEEEeecCCCc
Confidence            994343455555 55543

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=2e-19  Score=138.06  Aligned_cols=190  Identities=15%  Similarity=0.174  Sum_probs=154.9

Q ss_pred             eeceEEEEEeccCCeEEEeccCCCCCceEEEEccCC--ceeeeecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccC
Q 023822           76 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN--KYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRA  152 (276)
Q Consensus        76 ~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~  152 (276)
                      .++|+++.|+|....+++++.   |+.+++|.+...  ..++.+.-...+|.+.+|.|+|. .+++++....++.||+.+
T Consensus       213 ~~~I~sv~FHp~~plllvaG~---d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~  289 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGL---DGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET  289 (514)
T ss_pred             cCCceEEEecCCCceEEEecC---CCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccc
Confidence            468999999999999999998   999999988643  34556655678899999999999 899999999999999998


Q ss_pred             ceeeeeEe-----ecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeec
Q 023822          153 EKCQGLLR-----VQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM  226 (276)
Q Consensus       153 ~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  226 (276)
                      .+..+.-.     .........++++.+++... .|.|.+....+++.    +..+ ...+.+..++|+.+++.|++.+.
T Consensus       290 ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el----i~s~-KieG~v~~~~fsSdsk~l~~~~~  364 (514)
T KOG2055|consen  290 AKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL----ITSF-KIEGVVSDFTFSSDSKELLASGG  364 (514)
T ss_pred             cccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh----hhee-eeccEEeeEEEecCCcEEEEEcC
Confidence            87655442     22345778899998888777 89999999888653    2222 23457899999999999999999


Q ss_pred             CCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          227 EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       227 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      +|.|.+||++...+++++....  .-.-++++.+++|.|||+|+..|+|
T Consensus       365 ~GeV~v~nl~~~~~~~rf~D~G--~v~gts~~~S~ng~ylA~GS~~GiV  411 (514)
T KOG2055|consen  365 TGEVYVWNLRQNSCLHRFVDDG--SVHGTSLCISLNGSYLATGSDSGIV  411 (514)
T ss_pred             CceEEEEecCCcceEEEEeecC--ccceeeeeecCCCceEEeccCcceE
Confidence            9999999999999999997321  1233567888999999999999986

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.85  E-value=8.9e-20  Score=132.39  Aligned_cols=209  Identities=16%  Similarity=0.233  Sum_probs=157.6

Q ss_pred             ccccceeec-cCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCee-eeeee-----eeeeceEEEEEec--cCCeEEE
Q 023822           23 SMEVGMSFR-DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATC-LKTIN-----SKKYGVDLVCFTS--HPTTVIY   93 (276)
Q Consensus        23 ~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~-----~~~~~v~~~~~~~--~~~~l~~   93 (276)
                      +++.+..+. .+-+.|.|+.|.|++..+++-. |..|.+|+++.+.. ++.+.     .+....++-+|+|  ++..+++
T Consensus       111 tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t  189 (370)
T KOG1007|consen  111 TLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT  189 (370)
T ss_pred             hhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE
Confidence            356666665 5677999999999999998875 78899999987765 44432     2344577889998  6777777


Q ss_pred             eccCCCCCceEEEEccCCceeeee-cccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCce-eeeeE--eecCCCeeE
Q 023822           94 SSKNGWDESLRLLSLHDNKYLRYF-KGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEK-CQGLL--RVQGRPAAA  168 (276)
Q Consensus        94 ~~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~-~~~~~--~~~~~~~~~  168 (276)
                      .+    |+++..||+++.+....+ ..|...|..+.|+|+.+ +|++|+.||.|++||.|..+ ++..+  |.+-+.++.
T Consensus       190 t~----d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VR  265 (370)
T KOG1007|consen  190 TS----DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVR  265 (370)
T ss_pred             eC----CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEE
Confidence            76    999999999988776655 46888899999999877 78999999999999999654 45555  555677999


Q ss_pred             ecCCC--cEEEEeeCCeEEEEecccCCCC----------------------Ce---eeeeecCCCCCceEEEECCCCcE-
Q 023822          169 YDDQG--LVFAVAFGGYIRMFDARKYEKG----------------------PF---DIFSVGGDISDANVVKFSNDGRL-  220 (276)
Q Consensus       169 ~~~~~--~~l~~~~d~~i~~~d~~~~~~~----------------------~~---~~~~~~~~~~~i~~~~~~~~~~~-  220 (276)
                      |+|..  .+|.+++|..|.+|-...-...                      ++   .+..+..|...|.+++||.-..+ 
T Consensus       266 fn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWi  345 (370)
T KOG1007|consen  266 FNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWI  345 (370)
T ss_pred             ecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCee
Confidence            99854  4555556999999976442210                      01   12345568889999999987665 


Q ss_pred             EEEeecCCcEEEEECC
Q 023822          221 MLLTTMEGHIHVLDSF  236 (276)
Q Consensus       221 l~~~~~dg~i~i~d~~  236 (276)
                      +|+-+.||++.|=.+.
T Consensus       346 FASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  346 FASLSYDGRVIISSVP  361 (370)
T ss_pred             EEEeccCceEEeecCC
Confidence            5667999999876653

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.85  E-value=2.6e-18  Score=140.16  Aligned_cols=222  Identities=9%  Similarity=0.081  Sum_probs=152.3

Q ss_pred             eeccCCCcEEEEEEcCCCCEEEEee---cCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEE
Q 023822           29 SFRDYNGRISSMDFHKSSSYLVTAS---DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL  105 (276)
Q Consensus        29 ~~~~h~~~v~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~  105 (276)
                      .+..+...+.+.+|+|||+.|+..+   .+..+.+|++.+++.... ......+....|+|+++.|+.......+..|++
T Consensus       193 ~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~  271 (429)
T PRK03629        193 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYV  271 (429)
T ss_pred             EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEE
Confidence            3445667899999999999998654   245799999988754332 222334557899999999987643211346999


Q ss_pred             EEccCCceeeeecccCcceEEEEeccCCCEEEEeeCC-C--eEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee-
Q 023822          106 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLD-R--TVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF-  180 (276)
Q Consensus       106 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-  180 (276)
                      ||+.+++..+ +..+...+....|+|+|+.|+..+.+ +  .|+++|+.+++..... .........|+|+|+.++... 
T Consensus       272 ~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~  350 (429)
T PRK03629        272 MDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSS  350 (429)
T ss_pred             EECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEc
Confidence            9998876544 33345567889999999988776654 4  4555577665443322 223345789999998887655 


Q ss_pred             -C--CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCc---EEEEECCCCcEEEEeecCCCCCCce
Q 023822          181 -G--GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGH---IHVLDSFRGTLLSTYNVKPVSRNST  254 (276)
Q Consensus       181 -d--~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~---i~i~d~~~~~~~~~~~~~~~~~~~v  254 (276)
                       +  ..|.+||+.+++.     ..+... .......|+|||++|+.++.++.   +.++++ +|+....+.   .+.+.+
T Consensus       351 ~~g~~~I~~~dl~~g~~-----~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~---~~~~~~  420 (429)
T PRK03629        351 NGGQQHIAKQDLATGGV-----QVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLP---ATDGQV  420 (429)
T ss_pred             cCCCceEEEEECCCCCe-----EEeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECc---cCCCCc
Confidence             2  4688899877542     111111 12346789999999999887764   677776 566666676   567788


Q ss_pred             EEEEECCC
Q 023822          255 LEASFSPE  262 (276)
Q Consensus       255 ~~~~~s~~  262 (276)
                      ...+|+|-
T Consensus       421 ~~p~Wsp~  428 (429)
T PRK03629        421 KFPAWSPY  428 (429)
T ss_pred             CCcccCCC
Confidence            88999983

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.84  E-value=4.4e-20  Score=144.45  Aligned_cols=195  Identities=12%  Similarity=0.166  Sum_probs=143.0

Q ss_pred             cCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceE-EEEEe-------ccCCeEEEeccCCCCCce
Q 023822           32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVD-LVCFT-------SHPTTVIYSSKNGWDESL  103 (276)
Q Consensus        32 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~-~~~~~-------~~~~~l~~~~~~~~d~~i  103 (276)
                      .|...|.|+.|+.+...+.+++.+..+.-||+. ..........+.-+. .+..-       .....++.++.   ||.+
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~-~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~---DGkf   87 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVS-RDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSN---DGRF   87 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeeccc-chhhhhhhCCcccCCccccccccccCCCCCcceEEEEcC---CceE
Confidence            467778899999887766666554444444543 322222221111111 11111       12345666666   9999


Q ss_pred             EEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEeeC
Q 023822          104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAFG  181 (276)
Q Consensus       104 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~d  181 (276)
                      .+.+ +.++....+..|.+.+.+-.|+|+|.-|+++++||.|++|. +++-...++  ....+.|++|.|+..-++.+..
T Consensus        88 ~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g  165 (737)
T KOG1524|consen   88 VILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG  165 (737)
T ss_pred             EEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecC
Confidence            9887 45677778889999999999999999999999999999998 444444444  5567899999999988888888


Q ss_pred             CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECC
Q 023822          182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF  236 (276)
Q Consensus       182 ~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  236 (276)
                      +.+.+=-+.....    +.....|.+-|.++.|+|...++++|++|-..++||..
T Consensus       166 ~h~~IKpL~~n~k----~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~  216 (737)
T KOG1524|consen  166 GHISIKPLAANSK----IIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ  216 (737)
T ss_pred             CeEEEeecccccc----eeEEeccCcEEEEeecCccccceeecCCceeEEeeccc
Confidence            8888877765443    67778899999999999999999999999999999953

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.84  E-value=1.6e-20  Score=144.30  Aligned_cols=217  Identities=14%  Similarity=0.162  Sum_probs=184.1

Q ss_pred             CcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCcee
Q 023822           35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL  114 (276)
Q Consensus        35 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~  114 (276)
                      -.-+.+.++.+|..|+.|+.-|.+-.+|..+++....+...+ .|.++.|..+.++++++.    ...+++||- .|..+
T Consensus       130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~E-tv~Dv~~LHneq~~AVAQ----K~y~yvYD~-~GtEl  203 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVME-TVRDVTFLHNEQFFAVAQ----KKYVYVYDN-NGTEL  203 (545)
T ss_pred             cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhh-hhhhhhhhcchHHHHhhh----hceEEEecC-CCcEE
Confidence            345679999999999999999999999999999988887644 799999999999999887    789999994 56667


Q ss_pred             eeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-CCeEEEEeccc
Q 023822          115 RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARK  191 (276)
Q Consensus       115 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~  191 (276)
                      ..++.| ..|..+.|.|..-+|++++..|.++.-|+..++.+..+  .......+.-+|-+-++-.|. .|+|.+|....
T Consensus       204 HClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s  282 (545)
T KOG1272|consen  204 HCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS  282 (545)
T ss_pred             eehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCC
Confidence            777754 46889999999999999999999999999999999888  344566788889888887777 89999999987


Q ss_pred             CCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEE
Q 023822          192 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFV  266 (276)
Q Consensus       192 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  266 (276)
                      .+.    +..+-.|.++|.++++.++|+|+++++.|..++|||+++...+.++..    ..+...+++|..|.+.
T Consensus       283 keP----LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t----p~~a~~ls~SqkglLA  349 (545)
T KOG1272|consen  283 KEP----LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT----PHPASNLSLSQKGLLA  349 (545)
T ss_pred             cch----HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec----CCCcccccccccccee
Confidence            554    566677999999999999999999999999999999999888877762    4556678888776443

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=5.3e-20  Score=144.44  Aligned_cols=217  Identities=14%  Similarity=0.120  Sum_probs=162.3

Q ss_pred             hhccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCC----------eeeeeeeeeeeceEEEEEeccCCe
Q 023822           21 LQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA----------TCLKTINSKKYGVDLVCFTSHPTT   90 (276)
Q Consensus        21 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~   90 (276)
                      ...++++.+|++|.++|.|+++.+++..+++|+-||+|+.|++...          .....+.+|...++.+++++....
T Consensus       331 ~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~  410 (577)
T KOG0642|consen  331 EKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDR  410 (577)
T ss_pred             ccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccc
Confidence            3567889999999999999999999999999999999999976421          234567899999999999999999


Q ss_pred             EEEeccCCCCCceEEEEccCCceeeeeccc--CcceEEEEeccCC-CEEEEeeCCCeEEEEeccCceeeeeEe-------
Q 023822           91 VIYSSKNGWDESLRLLSLHDNKYLRYFKGH--HDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLR-------  160 (276)
Q Consensus        91 l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~--~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~-------  160 (276)
                      |++++.   ||++++|+.....+ .++...  .+...++++-... .+.++...-+.--++++........+.       
T Consensus       411 Llscs~---DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~  486 (577)
T KOG0642|consen  411 LLSCSS---DGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGP  486 (577)
T ss_pred             eeeecC---CceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcc
Confidence            999998   99999999876665 333222  2233555554332 122222222333334444433333331       


Q ss_pred             --ecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCC
Q 023822          161 --VQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR  237 (276)
Q Consensus       161 --~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  237 (276)
                        ...+..+.++|.+.+..++. |+.|+++|..+++.    ++....|...++++++.|+|.+|++++.|+.+++|.+..
T Consensus       487 ~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~----l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~  562 (577)
T KOG0642|consen  487 RRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI----LHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDV  562 (577)
T ss_pred             cccCccceEEecCCCCeeEecccCCceeccccccccc----chheeeccceecceeecCCCceEEeecCCceeehhhccc
Confidence              12345677888877766666 89999999998776    777778888999999999999999999999999999987


Q ss_pred             CcEEEEee
Q 023822          238 GTLLSTYN  245 (276)
Q Consensus       238 ~~~~~~~~  245 (276)
                      ..++....
T Consensus       563 k~~~~es~  570 (577)
T KOG0642|consen  563 KTCVLEST  570 (577)
T ss_pred             hheeeccc
Confidence            77776665

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.84  E-value=1.2e-18  Score=142.31  Aligned_cols=207  Identities=12%  Similarity=0.140  Sum_probs=141.4

Q ss_pred             CCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCC
Q 023822           55 DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD  134 (276)
Q Consensus        55 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  134 (276)
                      +..|++||..... ...+..+...+....|+|+++.++.++..+.+..|++||+.+++... +....+....++|+|||+
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG~  260 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDGS  260 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCCC
Confidence            4689999986544 45566677789999999999999988753224579999998875422 222223344689999999


Q ss_pred             EEEEee-CCCeEEE--EeccCceeeeeE-eecCCCeeEecCCCcEEEEee--CCeEEEEecccCCCCCeeeeeecCCCCC
Q 023822          135 CFISGS-LDRTVLL--WDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDIFSVGGDISD  208 (276)
Q Consensus       135 ~l~~~~-~d~~i~i--wd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~  208 (276)
                      .|+.++ .+|.+.|  ||+.+++..... +........|+|+++.++..+  ++...+|++....... ..  + .+.. 
T Consensus       261 ~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~-~~--l-~~~~-  335 (429)
T PRK01742        261 RLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA-SL--V-GGRG-  335 (429)
T ss_pred             EEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe-EE--e-cCCC-
Confidence            888764 6776555  566655543332 223456899999998766555  5788888876433211 11  1 2222 


Q ss_pred             ceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          209 ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       209 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                       ....|+|+|++|++.+.++ +.+||+.+++......   ..  ....+.|+|||++|++++.+|..
T Consensus       336 -~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~---~~--~~~~~~~sPdG~~i~~~s~~g~~  395 (429)
T PRK01742        336 -YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS---TF--LDESPSISPNGIMIIYSSTQGLG  395 (429)
T ss_pred             -CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC---CC--CCCCceECCCCCEEEEEEcCCCc
Confidence             4578999999998887765 6669998887653322   11  23467899999999999888754

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.83  E-value=6.9e-20  Score=146.99  Aligned_cols=188  Identities=17%  Similarity=0.243  Sum_probs=157.7

Q ss_pred             ceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeee
Q 023822           78 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG  157 (276)
Q Consensus        78 ~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  157 (276)
                      .|..++|-|||..++.+.    +..+.+||.+.|..++++++|.+.|.+++|+.||+.+++|+.|..|.+|.-.-....+
T Consensus        14 ci~d~afkPDGsqL~lAA----g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk   89 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA----GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK   89 (1081)
T ss_pred             chheeEECCCCceEEEec----CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceee
Confidence            689999999999999988    7899999999999999999999999999999999999999999999999977666666


Q ss_pred             eEeecCCCeeEecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCC
Q 023822          158 LLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR  237 (276)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  237 (276)
                      .-|...+.|+.|+|-.+.+++++=...-+|.......      ........+.+++|..||++++.|-.+|+|.+-+ .+
T Consensus        90 YSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V------~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRN-k~  162 (1081)
T KOG1538|consen   90 YSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSV------SKHKSSSRIICCSWTNDGQYLALGMFNGTISIRN-KN  162 (1081)
T ss_pred             eccCCeeeEeecCchHHHhhhcchhhccccChhhhhH------HhhhhheeEEEeeecCCCcEEEEeccCceEEeec-CC
Confidence            6688889999999999999998866677888765221      1112334788999999999999999999999997 56


Q ss_pred             CcEEEEeecCCCCCCceEEEEECCCC-----cEEEEecCCCCCC
Q 023822          238 GTLLSTYNVKPVSRNSTLEASFSPEG-----MFVISGRVSPFSS  276 (276)
Q Consensus       238 ~~~~~~~~~~~~~~~~v~~~~~s~~g-----~~l~~~~~dg~vs  276 (276)
                      ++..-.+....+...+|++++|+|..     ..+++..++.|.|
T Consensus       163 gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLS  206 (1081)
T KOG1538|consen  163 GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLS  206 (1081)
T ss_pred             CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeE
Confidence            77666666555688999999999963     4677777766543

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.83  E-value=8.9e-19  Score=132.55  Aligned_cols=189  Identities=22%  Similarity=0.302  Sum_probs=145.9

Q ss_pred             CCcEEEEEEcCCCC-EEEEeecCCeEEEEEccCCe---------eeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822           34 NGRISSMDFHKSSS-YLVTASDDESIRLYDVTAAT---------CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (276)
Q Consensus        34 ~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i  103 (276)
                      ..+|.++.|.++.. .||||+.|..|++|-++.+.         .+..+..|...|+++.|+|++..+++++.   +|.+
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D---~g~v   89 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGD---GGEV   89 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCC---CceE
Confidence            46899999998765 99999999999999886432         23456788999999999999999999998   9999


Q ss_pred             EEEEcc--------C--------CceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCC
Q 023822          104 RLLSLH--------D--------NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRP  165 (276)
Q Consensus       104 ~~~d~~--------~--------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~  165 (276)
                      .+|...        +        ......+.+|...|..++|+|+++++++++.|..+++||+..++....+  +.+.+.
T Consensus        90 ~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvq  169 (434)
T KOG1009|consen   90 FLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQ  169 (434)
T ss_pred             EEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccc
Confidence            999865        2        1234456789999999999999999999999999999999999998888  666678


Q ss_pred             eeEecCCCcEEEEee-CCeEEEEecccCCCC-------------------CeeeeeecCCCCCceEEEECCCCcEEEEee
Q 023822          166 AAAYDDQGLVFAVAF-GGYIRMFDARKYEKG-------------------PFDIFSVGGDISDANVVKFSNDGRLMLLTT  225 (276)
Q Consensus       166 ~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~-------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  225 (276)
                      .++|.|-+++++.-+ |...+.+.+...+..                   ...++.-.....-...++|+|+|.+|++.+
T Consensus       170 gvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa  249 (434)
T KOG1009|consen  170 GVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA  249 (434)
T ss_pred             eeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence            899999988877665 666666655432210                   011111111122345688999999988754

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=1.1e-17  Score=119.00  Aligned_cols=219  Identities=10%  Similarity=0.062  Sum_probs=160.7

Q ss_pred             cEEEEEEcCCCCEEEEeecCCeEEEEEccC---------C-eeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEE
Q 023822           36 RISSMDFHKSSSYLVTASDDESIRLYDVTA---------A-TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL  105 (276)
Q Consensus        36 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~---------~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~  105 (276)
                      .|.+-+++|.+++|++|..+|.|.+..+++         + ..+...++|++++..++|.  ..+|++++    ||.|+-
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g----dG~V~g   85 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG----DGLVYG   85 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc----CceEEE
Confidence            466678999999999999999999998863         1 2445568999999999997  56777777    999999


Q ss_pred             EEccCCce------eeee--ccc-----CcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEee--cCCCeeEe-
Q 023822          106 LSLHDNKY------LRYF--KGH-----HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV--QGRPAAAY-  169 (276)
Q Consensus       106 ~d~~~~~~------~~~~--~~~-----~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~-  169 (276)
                      |..+....      +...  .-|     -..|++|...|..+-++.++.|+.++.||+++++..+.++.  ..+.++.. 
T Consensus        86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R  165 (325)
T KOG0649|consen   86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGR  165 (325)
T ss_pred             eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeec
Confidence            98764322      1111  112     23689999999888788888999999999999999999944  44556666 


Q ss_pred             cCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecC--------CCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEE
Q 023822          170 DDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGG--------DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL  241 (276)
Q Consensus       170 ~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  241 (276)
                      +..++++.++.||++++||.++.+...  ......        -...|.+++-  +..+|++|+ .-.+.+|+++..++.
T Consensus       166 ~~~~qilsG~EDGtvRvWd~kt~k~v~--~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t  240 (325)
T KOG0649|consen  166 NANGQILSGAEDGTVRVWDTKTQKHVS--MIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSEST  240 (325)
T ss_pred             ccCcceeecCCCccEEEEeccccceeE--EeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCce
Confidence            677889988889999999999976421  111111        1223445554  445676664 456999999999999


Q ss_pred             EEeecCCCCCCceEEEEECCCCcEEEEecC
Q 023822          242 STYNVKPVSRNSTLEASFSPEGMFVISGRV  271 (276)
Q Consensus       242 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  271 (276)
                      ..+.    -..++..+.|..|  .++++++
T Consensus       241 ~vfp----ipa~v~~v~F~~d--~vl~~G~  264 (325)
T KOG0649|consen  241 CVFP----IPARVHLVDFVDD--CVLIGGE  264 (325)
T ss_pred             EEEe----cccceeEeeeecc--eEEEecc
Confidence            8887    5677888888665  4555553

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.82  E-value=2.6e-18  Score=140.45  Aligned_cols=241  Identities=12%  Similarity=0.130  Sum_probs=172.4

Q ss_pred             ccceeeccCCCcEEEEEEcC-CCCEEEEeecCCeEEEEEccCCee--eee----eeeeeeceEEEEEeccCCe--EEEec
Q 023822           25 EVGMSFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATC--LKT----INSKKYGVDLVCFTSHPTT--VIYSS   95 (276)
Q Consensus        25 ~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~--~~~----~~~~~~~v~~~~~~~~~~~--l~~~~   95 (276)
                      .+...+.. ..+|+|+.|+| +.+++|.|+.+|.|.+||+..+..  ...    ...|..++..+.|..+...  +++++
T Consensus       234 ~Pe~~~~~-~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~s  312 (555)
T KOG1587|consen  234 TPELVLES-PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLS  312 (555)
T ss_pred             CceEEEec-CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEe
Confidence            33344433 67899999999 677888999999999999987654  222    2457789999999876555  88888


Q ss_pred             cCCCCCceEEEEccCCce-ee-----eec------ccCcceEEEEeccC-CCEEEEeeCCCeEEEEecc---Cce-----
Q 023822           96 KNGWDESLRLLSLHDNKY-LR-----YFK------GHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQR---AEK-----  154 (276)
Q Consensus        96 ~~~~d~~i~~~d~~~~~~-~~-----~~~------~~~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~---~~~-----  154 (276)
                      .   ||.|..|+++.-.. ..     ...      .-...+++++|.+. .+.|+.|+.+|.|.--+..   ...     
T Consensus       313 s---DG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~  389 (555)
T KOG1587|consen  313 S---DGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYK  389 (555)
T ss_pred             c---CCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccc
Confidence            8   99999998765432 11     111      11235789999884 4589999999988773322   222     


Q ss_pred             --eeeeEeecCCCeeEecCCC-cEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCC-cEEEEeecCCcE
Q 023822          155 --CQGLLRVQGRPAAAYDDQG-LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHI  230 (276)
Q Consensus       155 --~~~~~~~~~~~~~~~~~~~-~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i  230 (276)
                        .....+...+..+.++|=+ +++.++.|.++++|.......   .++.+..+...+++++|||.. ..++++..||.+
T Consensus       390 ~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~---Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l  466 (555)
T KOG1587|consen  390 GHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIAS---PLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNL  466 (555)
T ss_pred             ccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCC---cchhhhhccceeeeeEEcCcCceEEEEEcCCCce
Confidence              1112266677889999866 455555599999999873222   145555666679999999975 567778889999


Q ss_pred             EEEECCCCcE--EEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          231 HVLDSFRGTL--LSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       231 ~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      .+||+.....  +....   ......+.+.|+++|+.|+.|...|.+
T Consensus       467 ~iWDLl~~~~~Pv~s~~---~~~~~l~~~~~s~~g~~lavGd~~G~~  510 (555)
T KOG1587|consen  467 DIWDLLQDDEEPVLSQK---VCSPALTRVRWSPNGKLLAVGDANGTT  510 (555)
T ss_pred             ehhhhhccccCCccccc---ccccccceeecCCCCcEEEEecCCCcE
Confidence            9999865443  33333   245667788999999999999999965

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.82  E-value=4.5e-19  Score=140.39  Aligned_cols=202  Identities=16%  Similarity=0.227  Sum_probs=168.0

Q ss_pred             eeeccCCCcEEEEEEcCCCCEEEEeecC---CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceE
Q 023822           28 MSFRDYNGRISSMDFHKSSSYLVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (276)
Q Consensus        28 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~  104 (276)
                      ...-.|..+|..+.|+..|.||++...+   ..|.|.++...+...-|....+.+.++.|+|...++++++    ...|+
T Consensus       515 ~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT----q~~vR  590 (733)
T KOG0650|consen  515 CIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT----QRSVR  590 (733)
T ss_pred             EEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe----ccceE
Confidence            4445689999999999999999987653   4789999988777667767778899999999999999998    78999


Q ss_pred             EEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCc-eeeeeE--eecCCCeeEecCCCcEEEEee-
Q 023822          105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE-KCQGLL--RVQGRPAAAYDDQGLVFAVAF-  180 (276)
Q Consensus       105 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~--~~~~~~~~~~~~~~~~l~~~~-  180 (276)
                      +||+..++.+..+......|..|+.+|.|..|+.++.|+.+..+|+.-. ++.+.+  |...++.++|++.-.++++++ 
T Consensus       591 iYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sd  670 (733)
T KOG0650|consen  591 IYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSD  670 (733)
T ss_pred             EEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecC
Confidence            9999998888888888889999999999999999999999999999854 445554  677789999999999999999 


Q ss_pred             CCeEEEEecccCC-----CCCeeeeeecCCCCC----ceEEEECCCCcEEEEeecCCcEEEE
Q 023822          181 GGYIRMFDARKYE-----KGPFDIFSVGGDISD----ANVVKFSNDGRLMLLTTMEGHIHVL  233 (276)
Q Consensus       181 d~~i~~~d~~~~~-----~~~~~~~~~~~~~~~----i~~~~~~~~~~~l~~~~~dg~i~i~  233 (276)
                      |+.+.||.-.-..     .....+..+.+|...    |..+.|+|...+|++++.||+|++|
T Consensus       671 Dgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  671 DGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             CCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            6999988643211     112234445566544    8888999999999999999999998

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.82  E-value=3.7e-17  Score=122.59  Aligned_cols=206  Identities=14%  Similarity=0.196  Sum_probs=153.6

Q ss_pred             CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeee---eeeceEEEEEeccCCeEEEeccCCCCCceEEEEccC
Q 023822           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS---KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD  110 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~  110 (276)
                      ..+|.++.++.  +.|+++-++ .|+|||+++.+.+.++..   +...+.++++++.+.+++.-+... .|.|.+||..+
T Consensus        87 pt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t-~GdV~l~d~~n  162 (391)
T KOG2110|consen   87 PTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTT-SGDVVLFDTIN  162 (391)
T ss_pred             CCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCC-CceEEEEEccc
Confidence            45677888875  466666555 499999999999888754   344566666666777888765432 79999999999


Q ss_pred             CceeeeecccCcceEEEEeccCCCEEEEeeCCCe-EEEEeccCceeeeeEeec----CCCeeEecCCCcEEEEee-CCeE
Q 023822          111 NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRT-VLLWDQRAEKCQGLLRVQ----GRPAAAYDDQGLVFAVAF-GGYI  184 (276)
Q Consensus       111 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~-d~~i  184 (276)
                      -+++..+..|.+.+.+++|+++|.+||+++..|+ ||++.+.+++.+..++.+    .+.+++|+|++.+|++++ .++|
T Consensus       163 l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTV  242 (391)
T KOG2110|consen  163 LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETV  242 (391)
T ss_pred             ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeE
Confidence            9999999999999999999999999999999997 789999999999998543    356899999999999888 6999


Q ss_pred             EEEecccCCCCCee-----------------------------------eeeecCCCCCc-eEEEEC--CCCcEEEEeec
Q 023822          185 RMFDARKYEKGPFD-----------------------------------IFSVGGDISDA-NVVKFS--NDGRLMLLTTM  226 (276)
Q Consensus       185 ~~~d~~~~~~~~~~-----------------------------------~~~~~~~~~~i-~~~~~~--~~~~~l~~~~~  226 (276)
                      .+|.+......+..                                   ...+  ..... ..+.+.  +....+..++.
T Consensus       243 HiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l--~~s~~~~~~~l~~~~~~~~v~vas~  320 (391)
T KOG2110|consen  243 HIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKL--PESGRKNICSLSSIQKIPRVLVASY  320 (391)
T ss_pred             EEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEc--cCCCccceEEeeccCCCCEEEEEEc
Confidence            99998754311100                                   0000  01111 223444  36678899999


Q ss_pred             CCcEEEEECCC--CcEEEEee
Q 023822          227 EGHIHVLDSFR--GTLLSTYN  245 (276)
Q Consensus       227 dg~i~i~d~~~--~~~~~~~~  245 (276)
                      ||.++.|.+.-  |.....++
T Consensus       321 dG~~y~y~l~~~~gGec~lik  341 (391)
T KOG2110|consen  321 DGHLYSYRLPPKEGGECALIK  341 (391)
T ss_pred             CCeEEEEEcCCCCCceeEEEE
Confidence            99999998653  44434443

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.81  E-value=3.7e-17  Score=134.06  Aligned_cols=223  Identities=10%  Similarity=0.065  Sum_probs=154.1

Q ss_pred             ceeeccCCCcEEEEEEcCCCCEEEEeec---CCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822           27 GMSFRDYNGRISSMDFHKSSSYLVTASD---DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (276)
Q Consensus        27 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i  103 (276)
                      .+.+..|...+.+.+|+|||+.|+..+.   +..|++||+.+++.. .+..+.+.+....|+|+++.++..........|
T Consensus       194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~I  272 (435)
T PRK05137        194 VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDI  272 (435)
T ss_pred             cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceE
Confidence            3456678889999999999999987763   468999999887653 344455567889999999988765432224558


Q ss_pred             EEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeC-CC--eEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEe
Q 023822          104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DR--TVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVA  179 (276)
Q Consensus       104 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~  179 (276)
                      ++||+.+++. ..+..+........|+||++.++..+. +|  .|+++|+..++..... .........|+|+|+.++..
T Consensus       273 y~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~  351 (435)
T PRK05137        273 YTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFT  351 (435)
T ss_pred             EEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEE
Confidence            8889887765 445556666778999999998887664 33  6888898776554433 22335568899999888776


Q ss_pred             e-C---CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecC------CcEEEEECCCCcEEEEeecCCC
Q 023822          180 F-G---GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME------GHIHVLDSFRGTLLSTYNVKPV  249 (276)
Q Consensus       180 ~-d---~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~  249 (276)
                      . +   ..|.+||+.....   ....   ....+....|+|||+.|+..+.+      ..+.++|+..+.. ..+.    
T Consensus       352 ~~~~~~~~i~~~d~~~~~~---~~lt---~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~----  420 (435)
T PRK05137        352 KQGGGQFSIGVMKPDGSGE---RILT---SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP----  420 (435)
T ss_pred             EcCCCceEEEEEECCCCce---Eecc---CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc----
Confidence            5 2   3688888754332   1111   12246678999999988776543      2588888765544 4443    


Q ss_pred             CCCceEEEEECCC
Q 023822          250 SRNSTLEASFSPE  262 (276)
Q Consensus       250 ~~~~v~~~~~s~~  262 (276)
                      ..+.+...+|+|-
T Consensus       421 ~~~~~~~p~Wsp~  433 (435)
T PRK05137        421 TPGDASDPAWSPL  433 (435)
T ss_pred             CCCCccCcccCCC
Confidence            2344667788873

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.81  E-value=2.5e-17  Score=134.94  Aligned_cols=223  Identities=13%  Similarity=0.086  Sum_probs=152.0

Q ss_pred             ceeeccCCCcEEEEEEcCCCCEEEEeec---CCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822           27 GMSFRDYNGRISSMDFHKSSSYLVTASD---DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (276)
Q Consensus        27 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i  103 (276)
                      .+.+..|...+.+.+|+|||+.|+..+.   +..|++||+.+++... +....+......|+|+++.++.......+..|
T Consensus       196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~I  274 (433)
T PRK04922        196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEI  274 (433)
T ss_pred             ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceE
Confidence            3445667788999999999999998764   3469999998776533 33334445678999999988765432114579


Q ss_pred             EEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeC-CCe--EEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEe
Q 023822          104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DRT--VLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVA  179 (276)
Q Consensus       104 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~--i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~  179 (276)
                      ++||+.+++.. .+..+.......+|+||++.|+..+. +|.  |+++|+.+++..... ........+|+|+|+.++..
T Consensus       275 y~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~  353 (433)
T PRK04922        275 YVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMV  353 (433)
T ss_pred             EEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEE
Confidence            99999887643 45555555677899999998877664 444  777777666543322 22334468999999888776


Q ss_pred             e-C---CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecC---CcEEEEECCCCcEEEEeecCCCCCC
Q 023822          180 F-G---GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME---GHIHVLDSFRGTLLSTYNVKPVSRN  252 (276)
Q Consensus       180 ~-d---~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~  252 (276)
                      . +   ..|.+||+.+++..     .+. +........|+|||++++..+.+   +.|.++++. +.....+.   .+.+
T Consensus       354 ~~~~~~~~I~v~d~~~g~~~-----~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~---~~~g  423 (433)
T PRK04922        354 HGSGGQYRIAVMDLSTGSVR-----TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLV---SADG  423 (433)
T ss_pred             ECCCCceeEEEEECCCCCeE-----ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcc---cCCC
Confidence            5 2   36999998765421     121 11234467999999988877653   458888874 45555555   3456


Q ss_pred             ceEEEEECC
Q 023822          253 STLEASFSP  261 (276)
Q Consensus       253 ~v~~~~~s~  261 (276)
                      .+...+|+|
T Consensus       424 ~~~~p~wsp  432 (433)
T PRK04922        424 EVREPAWSP  432 (433)
T ss_pred             CCCCCccCC
Confidence            677788887

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.81  E-value=3.7e-17  Score=134.07  Aligned_cols=205  Identities=13%  Similarity=0.090  Sum_probs=143.3

Q ss_pred             CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCE
Q 023822           56 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC  135 (276)
Q Consensus        56 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  135 (276)
                      ..|.++|.. +.....+..+...+...+|+|+++.|+..+..+.+..|.+||+.+++.. .+..+.+.+...+|+|||+.
T Consensus       182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~  259 (435)
T PRK05137        182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK  259 (435)
T ss_pred             eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence            478889875 4445566677778999999999999988865333678999999887653 44456667788999999997


Q ss_pred             EE-EeeCCCe--EEEEeccCceeeeeEee-cCCCeeEecCCCcEEEEeeC----CeEEEEecccCCCCCeeeeeecCCCC
Q 023822          136 FI-SGSLDRT--VLLWDQRAEKCQGLLRV-QGRPAAAYDDQGLVFAVAFG----GYIRMFDARKYEKGPFDIFSVGGDIS  207 (276)
Q Consensus       136 l~-~~~~d~~--i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~d----~~i~~~d~~~~~~~~~~~~~~~~~~~  207 (276)
                      |+ +.+.++.  |++||+.+++....... .......|+|+++.++..++    ..|+++|+.....     ..+.....
T Consensus       260 la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-----~~lt~~~~  334 (435)
T PRK05137        260 VVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-----RRISFGGG  334 (435)
T ss_pred             EEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-----EEeecCCC
Confidence            65 5555554  78889888765443322 23456899999987776663    3688888765432     11222234


Q ss_pred             CceEEEECCCCcEEEEeecC---CcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCC
Q 023822          208 DANVVKFSNDGRLMLLTTME---GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVS  272 (276)
Q Consensus       208 ~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  272 (276)
                      .+....|+|+|++|+..+.+   ..|.+||+.++.. ..+.    ....+....|+|||++|+..+.+
T Consensus       335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt----~~~~~~~p~~spDG~~i~~~~~~  397 (435)
T PRK05137        335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT----SGFLVEGPTWAPNGRVIMFFRQT  397 (435)
T ss_pred             cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc----CCCCCCCCeECCCCCEEEEEEcc
Confidence            46678999999999887643   3688889765543 3343    22346678999999988776543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.81  E-value=1.5e-16  Score=126.26  Aligned_cols=217  Identities=10%  Similarity=0.128  Sum_probs=144.1

Q ss_pred             EEeecCCeEEEEEccC-Ce--eeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccC-Cce--eeeecccCcc
Q 023822           50 VTASDDESIRLYDVTA-AT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD-NKY--LRYFKGHHDR  123 (276)
Q Consensus        50 ~~~~~d~~i~iwd~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~-~~~--~~~~~~~~~~  123 (276)
                      ++...++.|.+|++.+ ++  .+..+.. .+....++++|++++|+++...  ++.|.+|++.. ++.  ..... ....
T Consensus         6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~--~~~i~~~~~~~~g~l~~~~~~~-~~~~   81 (330)
T PRK11028          6 IASPESQQIHVWNLNHEGALTLLQVVDV-PGQVQPMVISPDKRHLYVGVRP--EFRVLSYRIADDGALTFAAESP-LPGS   81 (330)
T ss_pred             EEcCCCCCEEEEEECCCCceeeeeEEec-CCCCccEEECCCCCEEEEEECC--CCcEEEEEECCCCceEEeeeec-CCCC
Confidence            3446789999999964 33  3344432 3457789999999999887643  78999999873 332  22222 2335


Q ss_pred             eEEEEeccCCCEEEEeeC-CCeEEEEeccCce----eeeeEe-ecCCCeeEecCCCcEEEEee--CCeEEEEecccCCCC
Q 023822          124 VVSLSLCSSKDCFISGSL-DRTVLLWDQRAEK----CQGLLR-VQGRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEKG  195 (276)
Q Consensus       124 i~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~----~~~~~~-~~~~~~~~~~~~~~~l~~~~--d~~i~~~d~~~~~~~  195 (276)
                      ...++++|+++++++++. ++.|.+|++.+..    ....+. ......++++|+++++.++.  ++.|.+||+.+....
T Consensus        82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l  161 (330)
T PRK11028         82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHL  161 (330)
T ss_pred             ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcc
Confidence            678999999998887765 7899999997432    222221 23356788999998776555  699999999763211


Q ss_pred             -Ce--eeeeecCCCCCceEEEECCCCcEEEEeec-CCcEEEEECCC--Cc--EEEEeecCCC---CCCceEEEEECCCCc
Q 023822          196 -PF--DIFSVGGDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFR--GT--LLSTYNVKPV---SRNSTLEASFSPEGM  264 (276)
Q Consensus       196 -~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~--~~--~~~~~~~~~~---~~~~v~~~~~s~~g~  264 (276)
                       +.  ...... .......++|+|+|++++++.. ++.|.+|++..  ++  .+..+...+.   .......+.++|+|+
T Consensus       162 ~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~  240 (330)
T PRK11028        162 VAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGR  240 (330)
T ss_pred             cccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCC
Confidence             00  011111 1235678999999999988876 89999999973  33  2333332111   112334688999999


Q ss_pred             EEEEecC
Q 023822          265 FVISGRV  271 (276)
Q Consensus       265 ~l~~~~~  271 (276)
                      +|+++..
T Consensus       241 ~lyv~~~  247 (330)
T PRK11028        241 HLYACDR  247 (330)
T ss_pred             EEEEecC
Confidence            9998854

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=1.4e-18  Score=128.90  Aligned_cols=166  Identities=21%  Similarity=0.240  Sum_probs=131.1

Q ss_pred             CeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEecc--CCCEEEEeeCCCeEEEEeccCceeeeeE---eec-
Q 023822           89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS--SKDCFISGSLDRTVLLWDQRAEKCQGLL---RVQ-  162 (276)
Q Consensus        89 ~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~-  162 (276)
                      ..++++..   .|.|++||..+++.+..+++++..++.+.|..  ....+.+|+.||+|++||+|.......+   ... 
T Consensus        41 ~~vav~lS---ngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~  117 (376)
T KOG1188|consen   41 TAVAVSLS---NGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSG  117 (376)
T ss_pred             eeEEEEec---CCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCC
Confidence            45666666   99999999999999999999999999999977  4568999999999999999988766655   222 


Q ss_pred             -CCCeeEecCCCcEEEEee-----CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCC-CcEEEEeecCCcEEEEEC
Q 023822          163 -GRPAAAYDDQGLVFAVAF-----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDS  235 (276)
Q Consensus       163 -~~~~~~~~~~~~~l~~~~-----d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~  235 (276)
                       +..+++..-.+++++++.     +..+.+||+|..++.  ...-...|...|+++.|+|. .++|++||.||.|.+||+
T Consensus       118 ~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~--l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~  195 (376)
T KOG1188|consen  118 TPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL--LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT  195 (376)
T ss_pred             CcceEeeccCcCCeEEeccccccCceEEEEEEeccccch--hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence             223445555778888887     578999999986542  12234578889999999996 478999999999999998


Q ss_pred             CCCc----EEEEeecCCCCCCceEEEEECCCC
Q 023822          236 FRGT----LLSTYNVKPVSRNSTLEASFSPEG  263 (276)
Q Consensus       236 ~~~~----~~~~~~~~~~~~~~v~~~~~s~~g  263 (276)
                      +...    ++..+.    +...|..+.|..++
T Consensus       196 ~~d~EeDaL~~viN----~~sSI~~igw~~~~  223 (376)
T KOG1188|consen  196 KKDNEEDALLHVIN----HGSSIHLIGWLSKK  223 (376)
T ss_pred             CCCcchhhHHHhhc----ccceeeeeeeecCC
Confidence            7542    233343    77889999999888

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.81  E-value=2.4e-18  Score=129.96  Aligned_cols=204  Identities=15%  Similarity=0.175  Sum_probs=151.7

Q ss_pred             cceeeeeehHHHhhccccceeeccCCCcEEEEEEcC-CCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEecc
Q 023822            9 EDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH   87 (276)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~   87 (276)
                      ...+.++.........+++..|.+|...|--++|+| ..+.|++++.|.+|.+||+.+|+.+.++. |...|.++.|+.+
T Consensus       106 v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~d  184 (472)
T KOG0303|consen  106 VMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRD  184 (472)
T ss_pred             EEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccC
Confidence            334555555555566688999999999999999999 45688999999999999999999888887 9999999999999


Q ss_pred             CCeEEEeccCCCCCceEEEEccCCceeeeecccCcc-eEEEEeccCCCEEEEee---CCCeEEEEeccCceeeee---E-
Q 023822           88 PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDR-VVSLSLCSSKDCFISGS---LDRTVLLWDQRAEKCQGL---L-  159 (276)
Q Consensus        88 ~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~---~-  159 (276)
                      |..+++.+.   |..|++||.++++.+..-.+|.+. -...-|-.++..+.+|-   .+..+-+||...-+....   + 
T Consensus       185 Gs~l~Ttck---DKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD  261 (472)
T KOG0303|consen  185 GSLLCTTCK---DKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD  261 (472)
T ss_pred             Cceeeeecc---cceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec
Confidence            999999999   999999999999999888777652 34455777888555543   367899999775443322   2 


Q ss_pred             eecCCCeeEecCCCcEEEEee--CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCC
Q 023822          160 RVQGRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND  217 (276)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  217 (276)
                      ...++.--.|+++..++..+.  |+.|+.|.+..... .+..........+-..+.|-|.
T Consensus       262 tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P-~~hyln~f~S~epQRG~g~mPK  320 (472)
T KOG0303|consen  262 TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP-FVHYLNTFSSKEPQRGMGFMPK  320 (472)
T ss_pred             cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc-eeEEecccccCCcccccccccc
Confidence            233444556778887766655  99999999987432 1222222233345556666664

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.80  E-value=7.9e-19  Score=129.83  Aligned_cols=216  Identities=13%  Similarity=0.190  Sum_probs=158.7

Q ss_pred             EEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeec
Q 023822           39 SMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFK  118 (276)
Q Consensus        39 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~  118 (276)
                      -..|||+|+++|+++.- .+.|-|.++-+..+.+.. -..|.-+.|..+..+++.+...  ++.|.+|++...+-...+.
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk--~~~vqvwsl~Qpew~ckId   88 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYK--DPKVQVWSLVQPEWYCKID   88 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeec--cceEEEEEeecceeEEEec
Confidence            36899999999999765 788889887776655544 3468889999999888877663  8899999999998888898


Q ss_pred             ccCcceEEEEeccCCCE-EEEeeCCCeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEeeCC----eEEEEecccC
Q 023822          119 GHHDRVVSLSLCSSKDC-FISGSLDRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAFGG----YIRMFDARKY  192 (276)
Q Consensus       119 ~~~~~i~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~d~----~i~~~d~~~~  192 (276)
                      .....+.+++|+|+|+. |.+..-|-+|.+|.+.+.+....- ....+..++|+|+|++.+..+..    .+.+..-+..
T Consensus        89 eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W  168 (447)
T KOG4497|consen   89 EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAW  168 (447)
T ss_pred             cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHH
Confidence            88999999999999974 556666889999999998876655 44456789999999999988721    1222111110


Q ss_pred             CCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCC
Q 023822          193 EKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVS  272 (276)
Q Consensus       193 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  272 (276)
                      .    ....+....-..+.+.|+|||..|+         +||.--.-.+..++    -.-.+..++|+|.+++|+.|+.|
T Consensus       169 ~----ll~~f~~dT~DltgieWsPdg~~la---------Vwd~~Leykv~aYe----~~lG~k~v~wsP~~qflavGsyD  231 (447)
T KOG4497|consen  169 I----LLKEFKLDTIDLTGIEWSPDGNWLA---------VWDNVLEYKVYAYE----RGLGLKFVEWSPCNQFLAVGSYD  231 (447)
T ss_pred             H----HHHhcCCCcccccCceECCCCcEEE---------Eecchhhheeeeee----eccceeEEEeccccceEEeeccc
Confidence            0    0122233344677899999998776         55533222222333    23567889999999999999999


Q ss_pred             CCC
Q 023822          273 PFS  275 (276)
Q Consensus       273 g~v  275 (276)
                      +.+
T Consensus       232 ~~l  234 (447)
T KOG4497|consen  232 QML  234 (447)
T ss_pred             hhh
Confidence            864

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=4.6e-18  Score=142.78  Aligned_cols=238  Identities=17%  Similarity=0.213  Sum_probs=166.7

Q ss_pred             CCcEEEEEEcC--CCCEEEEeecCCeEEEEEcc-----CCeeeeeeee-------eeeceEEEEEeccCCeEEEeccCCC
Q 023822           34 NGRISSMDFHK--SSSYLVTASDDESIRLYDVT-----AATCLKTINS-------KKYGVDLVCFTSHPTTVIYSSKNGW   99 (276)
Q Consensus        34 ~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~-----~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~~~~   99 (276)
                      ...|+.+.+-.  |..++++|+.||.|+||+-.     +.+.+..+.+       ..+.-.-+.|.....+|++++.   
T Consensus      1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd--- 1185 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD--- 1185 (1387)
T ss_pred             CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC---
Confidence            35688888865  55689999999999999743     2233332221       1222256788888888888886   


Q ss_pred             CCceEEEEccCCceeeeec-ccCcceEEEEecc-CCCEEEEeeCCCeEEEEeccCceee---eeE--eecC--CCeeEec
Q 023822          100 DESLRLLSLHDNKYLRYFK-GHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQ---GLL--RVQG--RPAAAYD  170 (276)
Q Consensus       100 d~~i~~~d~~~~~~~~~~~-~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~---~~~--~~~~--~~~~~~~  170 (276)
                      -..|+|||......+..+. +....|+++.-+. .|+.+++|..||.|++||.|.....   ...  +...  +..+.+.
T Consensus      1186 ~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq 1265 (1387)
T KOG1517|consen 1186 VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQ 1265 (1387)
T ss_pred             eeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEee
Confidence            7899999999887776654 3344566665443 4689999999999999999865432   222  2222  6677777


Q ss_pred             CCC--cEEEEeeCCeEEEEecccCCC-CCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecC
Q 023822          171 DQG--LVFAVAFGGYIRMFDARKYEK-GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK  247 (276)
Q Consensus       171 ~~~--~~l~~~~d~~i~~~d~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  247 (276)
                      ++|  +++.++.+|.|++||+|.... ....+...-...+..+++..++....+|+|+. +.|+||++ .|+.+..++..
T Consensus      1266 ~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~-~G~~l~~~k~n 1343 (1387)
T KOG1517|consen 1266 RQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSL-SGEQLNIIKYN 1343 (1387)
T ss_pred             cCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEec-ChhhhcccccC
Confidence            765  456666699999999998422 21112111111235899999999999999988 89999996 45555555422


Q ss_pred             C----CCCCceEEEEECCCCcEEEEecCCCCCC
Q 023822          248 P----VSRNSTLEASFSPEGMFVISGRVSPFSS  276 (276)
Q Consensus       248 ~----~~~~~v~~~~~s~~g~~l~~~~~dg~vs  276 (276)
                      +    ...+.+.+++|+|.--+||+|+.|.+|+
T Consensus      1344 ~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~ 1376 (1387)
T KOG1517|consen 1344 PGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVS 1376 (1387)
T ss_pred             cccccCcCCCcceeeecchhHhhhhccCCceEE
Confidence            2    1345679999999999999999999875

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.80  E-value=9.3e-17  Score=131.17  Aligned_cols=221  Identities=13%  Similarity=0.112  Sum_probs=147.0

Q ss_pred             eeeccCCCcEEEEEEcCCCCEEEEeecC---CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceE
Q 023822           28 MSFRDYNGRISSMDFHKSSSYLVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (276)
Q Consensus        28 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~  104 (276)
                      +.+..+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++... +....+......|+|+++.++.....  ++...
T Consensus       189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~--~g~~~  265 (427)
T PRK02889        189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSR--DGNSQ  265 (427)
T ss_pred             eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEcc--CCCce
Confidence            3455677889999999999999877643   469999998886543 33333456789999999998765332  56555


Q ss_pred             EE--EccCCceeeeecccCcceEEEEeccCCCEEEEeeC-CCeEEEEec--cCceeeeeE-eecCCCeeEecCCCcEEEE
Q 023822          105 LL--SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DRTVLLWDQ--RAEKCQGLL-RVQGRPAAAYDDQGLVFAV  178 (276)
Q Consensus       105 ~~--d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~iwd~--~~~~~~~~~-~~~~~~~~~~~~~~~~l~~  178 (276)
                      +|  |+..+. ...+..+........|+|||+.|+..+. ++...+|.+  .+++..... .........|+|+|+.++.
T Consensus       266 Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~  344 (427)
T PRK02889        266 IYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAY  344 (427)
T ss_pred             EEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEE
Confidence            55  454444 4455555556677899999998776554 455566654  444332222 2223446789999998876


Q ss_pred             ee-CC---eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCC---cEEEEECCCCcEEEEeecCCCCC
Q 023822          179 AF-GG---YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG---HIHVLDSFRGTLLSTYNVKPVSR  251 (276)
Q Consensus       179 ~~-d~---~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~  251 (276)
                      .. ++   .|.+||+.+++..     .+... .......|+|||+.|+.++.++   .+.+.+. +++....+.   .+.
T Consensus       345 ~s~~~g~~~I~v~d~~~g~~~-----~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~---~~~  414 (427)
T PRK02889        345 ISRVGGAFKLYVQDLATGQVT-----ALTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLS---VQG  414 (427)
T ss_pred             EEccCCcEEEEEEECCCCCeE-----EccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEee---cCC
Confidence            65 32   6999999875431     11111 2345689999999988877543   3666666 566666665   355


Q ss_pred             CceEEEEECCC
Q 023822          252 NSTLEASFSPE  262 (276)
Q Consensus       252 ~~v~~~~~s~~  262 (276)
                      +.+...+|+|-
T Consensus       415 g~~~~p~wsp~  425 (427)
T PRK02889        415 GDVREPSWGPF  425 (427)
T ss_pred             CCCCCCccCCC
Confidence            67778889874

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.80  E-value=1.2e-16  Score=130.40  Aligned_cols=207  Identities=11%  Similarity=0.102  Sum_probs=140.0

Q ss_pred             CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCE
Q 023822           56 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC  135 (276)
Q Consensus        56 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  135 (276)
                      ..|.+||.+.... +.+..+...+...+|+|+++.++..+..+.+..|.+|++.+++... +....+.+..+.|+|||+.
T Consensus       179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~  256 (429)
T PRK03629        179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSK  256 (429)
T ss_pred             eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCE
Confidence            3788999865443 3444456689999999999999876543225689999998876433 2223344557899999998


Q ss_pred             EEEe-eCCC--eEEEEeccCceeeeeEe-ecCCCeeEecCCCcEEEEeeC--C--eEEEEecccCCCCCeeeeeecCCCC
Q 023822          136 FISG-SLDR--TVLLWDQRAEKCQGLLR-VQGRPAAAYDDQGLVFAVAFG--G--YIRMFDARKYEKGPFDIFSVGGDIS  207 (276)
Q Consensus       136 l~~~-~~d~--~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~d--~--~i~~~d~~~~~~~~~~~~~~~~~~~  207 (276)
                      |+.. +.+|  .|++||+++++...... ........|+|+++.++..++  +  .|+++|+.+++.     ..+.....
T Consensus       257 La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-----~~lt~~~~  331 (429)
T PRK03629        257 LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-----QRITWEGS  331 (429)
T ss_pred             EEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-----EEeecCCC
Confidence            7754 4444  59999998876654442 234567899999987776663  4  455556655332     12222233


Q ss_pred             CceEEEECCCCcEEEEeecC---CcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCC
Q 023822          208 DANVVKFSNDGRLMLLTTME---GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPF  274 (276)
Q Consensus       208 ~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~  274 (276)
                      ......|+|+|++|+..+.+   ..|.+||+.+++.. .+..  .  .......|+|||++|+.++.++.
T Consensus       332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~--~--~~~~~p~~SpDG~~i~~~s~~~~  396 (429)
T PRK03629        332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD--T--FLDETPSIAPNGTMVIYSSSQGM  396 (429)
T ss_pred             CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC--C--CCCCCceECCCCCEEEEEEcCCC
Confidence            45678999999998876543   35889999888654 3331  1  12346789999999999888764

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.79  E-value=1.9e-17  Score=124.97  Aligned_cols=221  Identities=12%  Similarity=0.101  Sum_probs=166.3

Q ss_pred             eeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCe----eeeeeeeeeeceEEEEEeccCCeEEE-eccCCCC--C
Q 023822           29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT----CLKTINSKKYGVDLVCFTSHPTTVIY-SSKNGWD--E  101 (276)
Q Consensus        29 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~~~~d--~  101 (276)
                      ......++|..++..  ...|++|-.+|.+.+|..+.+.    .+..+..+ .++..+.-++...++++ |+.   .  .
T Consensus       100 ~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGk---e~~n  173 (412)
T KOG3881|consen  100 TVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGK---ENIN  173 (412)
T ss_pred             ccccccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCch---hccc
Confidence            334445566666554  2467788889999999988443    33333333 45777777777766665 555   5  7


Q ss_pred             ceEEEEccCCceeeeecccC---------cceEEEEeccC--CCEEEEeeCCCeEEEEeccCc-eeeeeE--eecCCCee
Q 023822          102 SLRLLSLHDNKYLRYFKGHH---------DRVVSLSLCSS--KDCFISGSLDRTVLLWDQRAE-KCQGLL--RVQGRPAA  167 (276)
Q Consensus       102 ~i~~~d~~~~~~~~~~~~~~---------~~i~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~-~~~~~~--~~~~~~~~  167 (276)
                      .+.+||+++.+.+..-+.-+         -.++++.|-+.  ...|++++.-+.+++||.+.+ +++..+  ...++.++
T Consensus       174 ~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~  253 (412)
T KOG3881|consen  174 ELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISST  253 (412)
T ss_pred             ceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceee
Confidence            89999999886655443222         24678889887  779999999999999999865 455555  66778899


Q ss_pred             EecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeec
Q 023822          168 AYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV  246 (276)
Q Consensus       168 ~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  246 (276)
                      ...|++++++++. -+.+..||++.++..   ...+.+-.+.++++..+|.++++++++-|..|||+|+++.+++.... 
T Consensus       254 ~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~---g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY-  329 (412)
T KOG3881|consen  254 GLTPSGNFIYTGNTKGQLAKFDLRGGKLL---GCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY-  329 (412)
T ss_pred             eecCCCcEEEEecccchhheecccCceee---ccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh-
Confidence            9999999998888 799999999986642   33366777899999999999999999999999999999988877665 


Q ss_pred             CCCCCCceEEEEECCC
Q 023822          247 KPVSRNSTLEASFSPE  262 (276)
Q Consensus       247 ~~~~~~~v~~~~~s~~  262 (276)
                         ....++.+-+.++
T Consensus       330 ---vKs~lt~il~~~~  342 (412)
T KOG3881|consen  330 ---VKSRLTFILLRDD  342 (412)
T ss_pred             ---hhccccEEEecCC
Confidence               4566677777554

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.79  E-value=5.8e-17  Score=132.80  Aligned_cols=205  Identities=15%  Similarity=0.126  Sum_probs=140.5

Q ss_pred             CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCE
Q 023822           56 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC  135 (276)
Q Consensus        56 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  135 (276)
                      ..|.+||.. +.....+..+...+....|+|+++.++..+..+....|++||+.+++... +....+......|+|+|+.
T Consensus       184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~  261 (433)
T PRK04922        184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR  261 (433)
T ss_pred             EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence            468999975 44445555666789999999999999988753335679999998876533 3334455567899999997


Q ss_pred             EE-EeeCCC--eEEEEeccCceeeeeEee-cCCCeeEecCCCcEEEEee--CC--eEEEEecccCCCCCeeeeeecCCCC
Q 023822          136 FI-SGSLDR--TVLLWDQRAEKCQGLLRV-QGRPAAAYDDQGLVFAVAF--GG--YIRMFDARKYEKGPFDIFSVGGDIS  207 (276)
Q Consensus       136 l~-~~~~d~--~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~--d~--~i~~~d~~~~~~~~~~~~~~~~~~~  207 (276)
                      ++ +.+.++  .|++||+.+++....... .......|+|+++.++..+  ++  .|+++|+.+++.   .....  ...
T Consensus       262 l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~---~~lt~--~g~  336 (433)
T PRK04922        262 LALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA---ERLTF--QGN  336 (433)
T ss_pred             EEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe---EEeec--CCC
Confidence            65 445555  599999988775443322 2235689999998877666  34  466667655432   11222  223


Q ss_pred             CceEEEECCCCcEEEEeecCC---cEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCC
Q 023822          208 DANVVKFSNDGRLMLLTTMEG---HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVS  272 (276)
Q Consensus       208 ~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  272 (276)
                      .....+|+|+|++++..+.++   .|.+||+.+++.. .+.    +........|+|||++|+..+.+
T Consensus       337 ~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt----~~~~~~~p~~spdG~~i~~~s~~  399 (433)
T PRK04922        337 YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT----PGSLDESPSFAPNGSMVLYATRE  399 (433)
T ss_pred             CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC----CCCCCCCceECCCCCEEEEEEec
Confidence            345689999999998865443   5999999887765 333    22234567999999988776654

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=4.8e-17  Score=121.83  Aligned_cols=225  Identities=14%  Similarity=0.246  Sum_probs=155.0

Q ss_pred             CcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeee-eeeceEEEEEeccCC-eEEEeccCCCCCceEEEEccCC-
Q 023822           35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS-KKYGVDLVCFTSHPT-TVIYSSKNGWDESLRLLSLHDN-  111 (276)
Q Consensus        35 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~~~~d~~i~~~d~~~~-  111 (276)
                      ..+..++|++.-..+|++..|-.|++||-.. ++...++. ....|++++|-|.+. .+++++    .+-|.+|..... 
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgC----r~gIciW~~s~tl  173 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGC----RAGICIWSDSRTL  173 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeee----cceeEEEEcCccc
Confidence            4577899999777889999999999999765 44444432 345799999999654 566665    678999976421 


Q ss_pred             ---ce----------eeeecccCcceEEEEeccCCCEEEEeeC-CCeEEEEeccCceeeeeE--eecCCCeeEecCCCcE
Q 023822          112 ---KY----------LRYFKGHHDRVVSLSLCSSKDCFISGSL-DRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLV  175 (276)
Q Consensus       112 ---~~----------~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~  175 (276)
                         +.          +....+| .+|++|.|++||..+++++. |..|.+||..++..+...  ...++.-+.|+|++.+
T Consensus       174 n~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~  252 (445)
T KOG2139|consen  174 NANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDV  252 (445)
T ss_pred             ccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCE
Confidence               11          1122334 68999999999999999886 567999999988776655  5566778999999977


Q ss_pred             EEEee-CCeEEEEecccC-CCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCC----Cc----------
Q 023822          176 FAVAF-GGYIRMFDARKY-EKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR----GT----------  239 (276)
Q Consensus       176 l~~~~-d~~i~~~d~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~----~~----------  239 (276)
                      +.++. |+..++|..... ...   ...  -..+.|...+|+|+|++|+..... .=++|.+..    ..          
T Consensus       253 lfaAt~davfrlw~e~q~wt~e---rw~--lgsgrvqtacWspcGsfLLf~~sg-sp~lysl~f~~~~~~~~~~~~~k~~  326 (445)
T KOG2139|consen  253 LFAATCDAVFRLWQENQSWTKE---RWI--LGSGRVQTACWSPCGSFLLFACSG-SPRLYSLTFDGEDSVFLRPQSIKRV  326 (445)
T ss_pred             EEEecccceeeeehhcccceec---cee--ccCCceeeeeecCCCCEEEEEEcC-CceEEEEeecCCCccccCcccceee
Confidence            76666 999999955432 221   111  123478999999999887665432 234444321    00          


Q ss_pred             -EEEEe------ecCCCCCCceEEEEECCCCcEEEEecC
Q 023822          240 -LLSTY------NVKPVSRNSTLEASFSPEGMFVISGRV  271 (276)
Q Consensus       240 -~~~~~------~~~~~~~~~v~~~~~s~~g~~l~~~~~  271 (276)
                       ++..+      ...+-..+++.+++|.|.|.+||+.-.
T Consensus       327 lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK  365 (445)
T KOG2139|consen  327 LLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK  365 (445)
T ss_pred             eeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence             00101      001113578899999999999998644

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=2.5e-16  Score=118.08  Aligned_cols=203  Identities=11%  Similarity=0.147  Sum_probs=145.7

Q ss_pred             CCcEEEEEEcCC-CCEEEEeecCCeEEEEEccCC----ee----------eeeeeeeeeceEEEEEeccCCeEEEeccCC
Q 023822           34 NGRISSMDFHKS-SSYLVTASDDESIRLYDVTAA----TC----------LKTINSKKYGVDLVCFTSHPTTVIYSSKNG   98 (276)
Q Consensus        34 ~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~----~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~   98 (276)
                      +..|+|++|-|. +..|+.|+..| |.+|.....    +.          +....+| .+|+++.|++|+..+++++.+ 
T Consensus       140 QrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~g-  216 (445)
T KOG2139|consen  140 QRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFG-  216 (445)
T ss_pred             hcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccC-
Confidence            467999999994 56788888765 999987521    11          1112334 589999999999999999885 


Q ss_pred             CCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCc-eeeeeE-eecCCCeeEecCCCcEE
Q 023822           99 WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE-KCQGLL-RVQGRPAAAYDDQGLVF  176 (276)
Q Consensus        99 ~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~-~~~~~~~~~~~~~~~~l  176 (276)
                       +..|.+||..++..+.......+.+.-+.|+||+.+|+.+.-|+..++|+.... ...+-. ....+...+|+|+|.+|
T Consensus       217 -sssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfL  295 (445)
T KOG2139|consen  217 -SSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFL  295 (445)
T ss_pred             -cceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEE
Confidence             899999999998776655445677889999999999999999999999965543 333222 33467789999999988


Q ss_pred             EEeeCCeEEEEecccCCCCCeee-----------eee-----cC----CCCCceEEEECCCCcEEEEeecC--------C
Q 023822          177 AVAFGGYIRMFDARKYEKGPFDI-----------FSV-----GG----DISDANVVKFSNDGRLMLLTTME--------G  228 (276)
Q Consensus       177 ~~~~d~~i~~~d~~~~~~~~~~~-----------~~~-----~~----~~~~i~~~~~~~~~~~l~~~~~d--------g  228 (276)
                      .....+.-++|.+....+.....           ..+     ..    -.+++.+++|.|.|.+||+.-..        .
T Consensus       296 Lf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~  375 (445)
T KOG2139|consen  296 LFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKL  375 (445)
T ss_pred             EEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhh
Confidence            88887777777765433221110           000     01    13577899999999999986543        2


Q ss_pred             cEEEEECCCCcE
Q 023822          229 HIHVLDSFRGTL  240 (276)
Q Consensus       229 ~i~i~d~~~~~~  240 (276)
                      .|.+||.+..-.
T Consensus       376 ~i~~fdtr~sp~  387 (445)
T KOG2139|consen  376 HISRFDTRKSPP  387 (445)
T ss_pred             hhhhhcccccCc
Confidence            467788665433

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.78  E-value=1e-15  Score=121.68  Aligned_cols=244  Identities=14%  Similarity=0.174  Sum_probs=155.7

Q ss_pred             cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i  103 (276)
                      .+.+.++......-..+.|+|||+++++++.||.|.++|+.+++.+.+++... ....+++++++++++++...  .+.+
T Consensus        26 ~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~--~~~v  102 (369)
T PF02239_consen   26 NKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYE--PGTV  102 (369)
T ss_dssp             -SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEE--TTEE
T ss_pred             CeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecC--CCce
Confidence            45556666544444557899999999999999999999999999999987655 46789999999999988753  8999


Q ss_pred             EEEEccCCceeeeeccc-------CcceEEEEeccCCCEEEEeeC-CCeEEEEeccCceeee--eEee-cCCCeeEecCC
Q 023822          104 RLLSLHDNKYLRYFKGH-------HDRVVSLSLCSSKDCFISGSL-DRTVLLWDQRAEKCQG--LLRV-QGRPAAAYDDQ  172 (276)
Q Consensus       104 ~~~d~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~--~~~~-~~~~~~~~~~~  172 (276)
                      .++|.++.++++.+...       ...+..+..+|....++..-. .+.|.+.|....+...  .+.. .......|+|+
T Consensus       103 ~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpd  182 (369)
T PF02239_consen  103 SVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPD  182 (369)
T ss_dssp             EEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TT
T ss_pred             eEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcc
Confidence            99999999988877532       345678888888886665555 4888888877654332  2222 22346899999


Q ss_pred             CcEEEEee--CCeEEEEecccCCCC--------Ce-------------------------------------------ee
Q 023822          173 GLVFAVAF--GGYIRMFDARKYEKG--------PF-------------------------------------------DI  199 (276)
Q Consensus       173 ~~~l~~~~--d~~i~~~d~~~~~~~--------~~-------------------------------------------~~  199 (276)
                      ++++.++.  ++.|.++|.++.+..        +.                                           ..
T Consensus       183 gry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv  262 (369)
T PF02239_consen  183 GRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVV  262 (369)
T ss_dssp             SSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEE
T ss_pred             cceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEE
Confidence            98876654  678888887664310        00                                           00


Q ss_pred             eeecCCCCCceEEEECCCCcEEEEe----ecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCC
Q 023822          200 FSVGGDISDANVVKFSNDGRLMLLT----TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       200 ~~~~~~~~~i~~~~~~~~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  273 (276)
                      ..+.....+ .-+..+|+++++++.    ...+.|.++|.++.+....+..  +....+..+.|++||+.+..+..++
T Consensus       263 ~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~--~~~~~~~h~ef~~dG~~v~vS~~~~  337 (369)
T PF02239_consen  263 KTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITP--GPGKRVVHMEFNPDGKEVWVSVWDG  337 (369)
T ss_dssp             EEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHH--HHT--EEEEEE-TTSSEEEEEEE--
T ss_pred             EEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEec--cCCCcEeccEECCCCCEEEEEEecC
Confidence            001111112 456789999999987    3457899999999988887763  1223488999999999877665543

...

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=1.8e-16  Score=130.85  Aligned_cols=237  Identities=10%  Similarity=0.111  Sum_probs=163.7

Q ss_pred             cCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccC----CeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEE
Q 023822           32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA----ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS  107 (276)
Q Consensus        32 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d  107 (276)
                      .|.-.++|.+++|+++++|+|..||.|.+|.--.    ......+.-|..+|.+++|+++|.+|++|+.   .+.+.+|.
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~---E~VLv~Wq  279 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGR---EGVLVLWQ  279 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeeccc---ceEEEEEe
Confidence            4777799999999999999999999999997432    1234556778889999999999999999998   99999999


Q ss_pred             ccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe-------------ecCCCeeEecCCC-
Q 023822          108 LHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR-------------VQGRPAAAYDDQG-  173 (276)
Q Consensus       108 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------------~~~~~~~~~~~~~-  173 (276)
                      +.+++ .+-+..-.++|..+.++||+.+.+....|+.|.+-...+......+.             ..-...++++|.- 
T Consensus       280 ~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~  358 (792)
T KOG1963|consen  280 LETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN  358 (792)
T ss_pred             ecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence            99998 55566678899999999999999999999999998775544333320             1112356667733 


Q ss_pred             cEEEEeeCCeEEEEecccCCCC----------------------------------------------------------
Q 023822          174 LVFAVAFGGYIRMFDARKYEKG----------------------------------------------------------  195 (276)
Q Consensus       174 ~~l~~~~d~~i~~~d~~~~~~~----------------------------------------------------------  195 (276)
                      ..+..+..+.|.+||+.+.+..                                                          
T Consensus       359 ~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n  438 (792)
T KOG1963|consen  359 SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN  438 (792)
T ss_pred             ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence            3333333677777776543210                                                          


Q ss_pred             -----C-eeeeeecCCCCCceEEEEC-CCCc-EEEEeecCCcEEEEECCCCcEEEEe-------ecCCCCCCceEEEEEC
Q 023822          196 -----P-FDIFSVGGDISDANVVKFS-NDGR-LMLLTTMEGHIHVLDSFRGTLLSTY-------NVKPVSRNSTLEASFS  260 (276)
Q Consensus       196 -----~-~~~~~~~~~~~~i~~~~~~-~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~~~~v~~~~~s  260 (276)
                           . +.......|...+...++. |... ..++++.||.+++|-+.+.+.+...       .....|..++++++|+
T Consensus       439 ~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs  518 (792)
T KOG1963|consen  439 PNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFS  518 (792)
T ss_pred             CCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhc
Confidence                 0 0000111233333333333 3322 6888999999999988432221110       0111367899999999


Q ss_pred             CCCcEEEEecCC
Q 023822          261 PEGMFVISGRVS  272 (276)
Q Consensus       261 ~~g~~l~~~~~d  272 (276)
                      .||..|+.+-+|
T Consensus       519 ~dGslla~s~~~  530 (792)
T KOG1963|consen  519 QDGSLLAVSFDD  530 (792)
T ss_pred             CCCcEEEEecCC
Confidence            999888776554

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=7e-17  Score=127.64  Aligned_cols=241  Identities=16%  Similarity=0.246  Sum_probs=178.1

Q ss_pred             hccccceeeccCCCcEEEEEEcCCCCEE-EEeecCCeEEEEEccCCeeeee----------------------------e
Q 023822           22 QSMEVGMSFRDYNGRISSMDFHKSSSYL-VTASDDESIRLYDVTAATCLKT----------------------------I   72 (276)
Q Consensus        22 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~----------------------------~   72 (276)
                      +..++++.| +|....+.|..+|||+|+ |+|..--.|++||+.+-.....                            +
T Consensus        40 ~rieLiQdf-e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~I  118 (703)
T KOG2321|consen   40 QRIELIQDF-EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTI  118 (703)
T ss_pred             HHHHHHHhc-CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCcee
Confidence            334444444 467888999999999986 5666778999999875322111                            0


Q ss_pred             eeee-----------eceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeC
Q 023822           73 NSKK-----------YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL  141 (276)
Q Consensus        73 ~~~~-----------~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  141 (276)
                      ..|.           ..-..++++.-..-|++++.   ...|+-++++.|+.+..+....+.++++..++-..+|++|+.
T Consensus       119 efHak~G~hy~~RIP~~GRDm~y~~~scDly~~gs---g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~  195 (703)
T KOG2321|consen  119 EFHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGS---GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTE  195 (703)
T ss_pred             eehhhcCeeeeeecCcCCccccccCCCccEEEeec---CcceEEEEccccccccccccccccceeeeecCccceEEeccc
Confidence            1110           01224444443334455554   778999999999999988878899999999999999999999


Q ss_pred             CCeEEEEeccCceeeeeEe-------------ecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCC
Q 023822          142 DRTVLLWDQRAEKCQGLLR-------------VQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDIS  207 (276)
Q Consensus       142 d~~i~iwd~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~  207 (276)
                      +|.|-.||.+.......+.             ...+..+.|+.+|..+++|+ +|.+.+||++..+.  + ...-.....
T Consensus       196 ~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p--l-~~kdh~~e~  272 (703)
T KOG2321|consen  196 DGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP--L-LVKDHGYEL  272 (703)
T ss_pred             CceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc--e-eecccCCcc
Confidence            9999999999877666551             12266899999999998888 89999999998653  2 223334456


Q ss_pred             CceEEEECCC--CcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCC
Q 023822          208 DANVVKFSND--GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPF  274 (276)
Q Consensus       208 ~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~  274 (276)
                      +|..+.|.+.  ++.+++. ....++|||-.+|+....+.    ....++.+++-|++-+++++-+++-
T Consensus       273 pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiE----pt~~lND~C~~p~sGm~f~Ane~~~  336 (703)
T KOG2321|consen  273 PIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIE----PTSDLNDFCFVPGSGMFFTANESSK  336 (703)
T ss_pred             ceeeecccccCCCceEEec-chHHhhhcccccCCceeecc----ccCCcCceeeecCCceEEEecCCCc
Confidence            8899999876  3444443 45679999999999999887    5667999999999999999877653

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.78  E-value=2.2e-16  Score=128.98  Aligned_cols=208  Identities=12%  Similarity=0.127  Sum_probs=136.4

Q ss_pred             CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCE
Q 023822           56 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC  135 (276)
Q Consensus        56 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  135 (276)
                      ..|.++|.. +.....+..+...+...+|+|+++.++..+.......|.+||+.+++... +....+.+....|+|||+.
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~  253 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT  253 (427)
T ss_pred             cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence            467777763 44445555666789999999999999887753224569999999887543 3334455678999999997


Q ss_pred             EE-EeeCCCeEEEEe--ccCceeeeeEe-ecCCCeeEecCCCcEEEEee--CCeEEEEecccCCCCCeeeeeecCCCCCc
Q 023822          136 FI-SGSLDRTVLLWD--QRAEKCQGLLR-VQGRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDIFSVGGDISDA  209 (276)
Q Consensus       136 l~-~~~~d~~i~iwd--~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~i  209 (276)
                      |+ +.+.++...+|.  +..+....... ........|+|+|+.++..+  ++...+|.+...... .......  ....
T Consensus       254 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~-~~~lt~~--g~~~  330 (427)
T PRK02889        254 LAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA-AQRVTFT--GSYN  330 (427)
T ss_pred             EEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc-eEEEecC--CCCc
Confidence            76 566777656554  44444322222 22245678999998776655  356666655422111 1122222  2234


Q ss_pred             eEEEECCCCcEEEEeecCC---cEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCC
Q 023822          210 NVVKFSNDGRLMLLTTMEG---HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       210 ~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  273 (276)
                      ...+|+|+|++|+..+.++   .|.+||+.+++......     ........|+|||+.|+.++.++
T Consensus       331 ~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-----~~~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        331 TSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD-----TTRDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             CceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC-----CCCccCceECCCCCEEEEEEecC
Confidence            4678999999998877654   59999998887543322     12345789999999988877654

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=1.5e-16  Score=131.21  Aligned_cols=227  Identities=14%  Similarity=0.121  Sum_probs=165.5

Q ss_pred             EEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCC---eEEEeccCCCCCceEEEEccCCcee
Q 023822           38 SSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT---TVIYSSKNGWDESLRLLSLHDNKYL  114 (276)
Q Consensus        38 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~~~~d~~i~~~d~~~~~~~  114 (276)
                      ....|++|+++++.... ..|.||...++.++..+..|..++..+.+.|...   ++++++.   +|.|++||...+..+
T Consensus        20 ~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl---~G~I~vwd~~~~~Ll   95 (792)
T KOG1963|consen   20 SPAVFSNDAKFLFLCTG-NFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSL---DGTIRVWDWSDGELL   95 (792)
T ss_pred             cccccccCCcEEEEeeC-CEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEec---CccEEEecCCCcEEE
Confidence            34568999988887654 5899999999999999999999999999988665   4556776   999999999887665


Q ss_pred             eeecccCcc----------------------------------------------------------eEEEEeccCCCEE
Q 023822          115 RYFKGHHDR----------------------------------------------------------VVSLSLCSSKDCF  136 (276)
Q Consensus       115 ~~~~~~~~~----------------------------------------------------------i~~~~~~~~~~~l  136 (276)
                      +++..+-..                                                          -.++.+++.+.+.
T Consensus        96 kt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~  175 (792)
T KOG1963|consen   96 KTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFK  175 (792)
T ss_pred             EEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEE
Confidence            543211000                                                          1223333333332


Q ss_pred             EEeeCCCeEEEEeccCceeee------eEeecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCc
Q 023822          137 ISGSLDRTVLLWDQRAEKCQG------LLRVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDA  209 (276)
Q Consensus       137 ~~~~~d~~i~iwd~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i  209 (276)
                      ... .+..+.+|+..+.....      ..|...+.+.+++|.+++++++. ||+|.+|.--..+........+.-|..+|
T Consensus       176 ~i~-~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V  254 (792)
T KOG1963|consen  176 GIV-HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEV  254 (792)
T ss_pred             EEE-EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccccc
Confidence            222 24457777776643110      01333467899999999999998 89999997544223333345556688899


Q ss_pred             eEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCC
Q 023822          210 NVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       210 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  273 (276)
                      ++++|+++|.+|++|+..|.+.+|.+.+++.. -+.   ...++|..+.+|||+.+.+...+|.
T Consensus       255 ~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kq-fLP---RLgs~I~~i~vS~ds~~~sl~~~DN  314 (792)
T KOG1963|consen  255 NSLSFSSDGAYLLSGGREGVLVLWQLETGKKQ-FLP---RLGSPILHIVVSPDSDLYSLVLEDN  314 (792)
T ss_pred             ceeEEecCCceEeecccceEEEEEeecCCCcc-ccc---ccCCeeEEEEEcCCCCeEEEEecCc
Confidence            99999999999999999999999999998832 222   3678999999999999887776664

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.77  E-value=1.1e-16  Score=116.08  Aligned_cols=158  Identities=19%  Similarity=0.262  Sum_probs=113.4

Q ss_pred             EEEEEeccCCeEEEeccC-------CCCCceEEEEccCC-ceeeeecc-cCcceEEEEeccCCCEEEEe--eCCCeEEEE
Q 023822           80 DLVCFTSHPTTVIYSSKN-------GWDESLRLLSLHDN-KYLRYFKG-HHDRVVSLSLCSSKDCFISG--SLDRTVLLW  148 (276)
Q Consensus        80 ~~~~~~~~~~~l~~~~~~-------~~d~~i~~~d~~~~-~~~~~~~~-~~~~i~~~~~~~~~~~l~~~--~~d~~i~iw  148 (276)
                      ..+.|+++|++|++-...       ..-+...+|.++.. .....+.- ..++|.+++|+|+++.|++.  ..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            457888888887765541       11234555555322 33344432 34579999999999987654  457799999


Q ss_pred             eccCceeeeeEeecCCCeeEecCCCcEEEEee----CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEe
Q 023822          149 DQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLT  224 (276)
Q Consensus       149 d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  224 (276)
                      |++ .+.+..+.......+.|+|+|++++.+.    .|.|.+||.++.+.    +... .| ..++.++|+|+|++|+++
T Consensus        89 d~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~----i~~~-~~-~~~t~~~WsPdGr~~~ta  161 (194)
T PF08662_consen   89 DVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK----ISTF-EH-SDATDVEWSPDGRYLATA  161 (194)
T ss_pred             cCc-ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE----eecc-cc-CcEEEEEEcCCCCEEEEE
Confidence            997 6666677767778999999999998876    47899999996442    3222 23 357899999999999998


Q ss_pred             ec------CCcEEEEECCCCcEEEEee
Q 023822          225 TM------EGHIHVLDSFRGTLLSTYN  245 (276)
Q Consensus       225 ~~------dg~i~i~d~~~~~~~~~~~  245 (276)
                      ..      |+.++||+. +|+++....
T Consensus       162 ~t~~r~~~dng~~Iw~~-~G~~l~~~~  187 (194)
T PF08662_consen  162 TTSPRLRVDNGFKIWSF-QGRLLYKKP  187 (194)
T ss_pred             EeccceeccccEEEEEe-cCeEeEecc
Confidence            64      788999997 577776654

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=3.1e-18  Score=132.62  Aligned_cols=250  Identities=19%  Similarity=0.250  Sum_probs=186.4

Q ss_pred             HHhhccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeee-eeeeeceEEEEEecc--CCeEEEec
Q 023822           19 EILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTI-NSKKYGVDLVCFTSH--PTTVIYSS   95 (276)
Q Consensus        19 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~l~~~~   95 (276)
                      ...+.+.....|..|.+.|..+.|+..|..|++|+.|..|.+||...++....+ .+|...|....|-|.  ...+++++
T Consensus       127 ~~vqr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s  206 (559)
T KOG1334|consen  127 LFVQRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSS  206 (559)
T ss_pred             HHHHHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceecc
Confidence            345667888889999999999999999999999999999999999988877666 467777887788874  45677777


Q ss_pred             cCCCCCceEEEEccCCce---eeeecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCceeeeeE-----eec---C
Q 023822           96 KNGWDESLRLLSLHDNKY---LRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLL-----RVQ---G  163 (276)
Q Consensus        96 ~~~~d~~i~~~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~---~  163 (276)
                      .   ||.+++=.+.....   ...+..|.++|.-++.-|+.. .|.+++.|+.+.-.|++...+...+     +..   .
T Consensus       207 ~---dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~  283 (559)
T KOG1334|consen  207 R---DGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVG  283 (559)
T ss_pred             c---cCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCcccee
Confidence            7   99999887654332   345667999999999999765 6999999999999999987665544     111   2


Q ss_pred             CCeeEecCCCc-EEEEee-CCeEEEEecccCCCCCe-----------------------------------------eee
Q 023822          164 RPAAAYDDQGL-VFAVAF-GGYIRMFDARKYEKGPF-----------------------------------------DIF  200 (276)
Q Consensus       164 ~~~~~~~~~~~-~l~~~~-d~~i~~~d~~~~~~~~~-----------------------------------------~~~  200 (276)
                      ...++.+|.+. .++++. |..+++||.+.......                                         .++
T Consensus       284 L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF  363 (559)
T KOG1334|consen  284 LYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLF  363 (559)
T ss_pred             eeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEe
Confidence            34677777653 445444 88888888775432100                                         000


Q ss_pred             ----------------------eecCCC--CCceEEE-ECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceE
Q 023822          201 ----------------------SVGGDI--SDANVVK-FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTL  255 (276)
Q Consensus       201 ----------------------~~~~~~--~~i~~~~-~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  255 (276)
                                            ..++|.  ..|..+- |-|...|+++|+.-|.|.||+-.+++.++.++   +...-|+
T Consensus       364 ~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Me---gDr~VVN  440 (559)
T KOG1334|consen  364 NKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFME---GDRHVVN  440 (559)
T ss_pred             ccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhh---cccceEe
Confidence                                  011121  1233333 44666799999999999999999999998888   5556899


Q ss_pred             EEEECCCCcEEEEecCCCC
Q 023822          256 EASFSPEGMFVISGRVSPF  274 (276)
Q Consensus       256 ~~~~s~~g~~l~~~~~dg~  274 (276)
                      +|.-+|.-..||+++-|--
T Consensus       441 CLEpHP~~PvLAsSGid~D  459 (559)
T KOG1334|consen  441 CLEPHPHLPVLASSGIDHD  459 (559)
T ss_pred             ccCCCCCCchhhccCCccc
Confidence            9999999999999987743

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.76  E-value=3.4e-15  Score=110.15  Aligned_cols=184  Identities=16%  Similarity=0.279  Sum_probs=134.4

Q ss_pred             CcccC-cccceeeeeehHHHhhccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEcc-CCeeeeeeeeeee--
Q 023822            2 VGSQS-EREDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVT-AATCLKTINSKKY--   77 (276)
Q Consensus         2 vg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~--   77 (276)
                      ||+.. ++..+..+-++++...  +.+.++. ...+|.++.+.++  .|++.- .+.|+||... +.+.+..+.....  
T Consensus        64 VGGg~~pky~pNkviIWDD~k~--~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPk  137 (346)
T KOG2111|consen   64 VGGGSRPKYPPNKVIIWDDLKE--RCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPK  137 (346)
T ss_pred             ecCCCCCCCCCceEEEEecccC--cEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCC
Confidence            45544 5566666777775432  2233332 3678999999875  555553 4689999987 5566666544332  


Q ss_pred             ceEEEEEeccCCeEEEeccCCCCCceEEEEccCCce--eeeecccCcceEEEEeccCCCEEEEeeCCCe-EEEEeccCce
Q 023822           78 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY--LRYFKGHHDRVVSLSLCSSKDCFISGSLDRT-VLLWDQRAEK  154 (276)
Q Consensus        78 ~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~  154 (276)
                      ...+++-..+...|+.-+..  -|.|++-|+...+.  ...+..|.+.|.|++.+.+|.++|+++..|+ |+|||..+++
T Consensus       138 GlC~~~~~~~k~~LafPg~k--~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~  215 (346)
T KOG2111|consen  138 GLCSLCPTSNKSLLAFPGFK--TGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGT  215 (346)
T ss_pred             ceEeecCCCCceEEEcCCCc--cceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCc
Confidence            33333333344445544432  79999999987665  4778899999999999999999999999997 8999999999


Q ss_pred             eeeeEeec----CCCeeEecCCCcEEEEeeC-CeEEEEecccCC
Q 023822          155 CQGLLRVQ----GRPAAAYDDQGLVFAVAFG-GYIRMFDARKYE  193 (276)
Q Consensus       155 ~~~~~~~~----~~~~~~~~~~~~~l~~~~d-~~i~~~d~~~~~  193 (276)
                      .+.+++.+    .+.+++|+|+..+|++++| |++.+|.++...
T Consensus       216 ~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  216 LLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             EeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence            99999443    4679999999999999995 999999987643

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.76  E-value=1.4e-14  Score=115.26  Aligned_cols=245  Identities=14%  Similarity=0.188  Sum_probs=160.3

Q ss_pred             hccccceeeccCCCcEEEEEEcCCCCEEEEeec----CCeEEEEEccCC--e--eeeeeeeeeeceEEEEEeccCCeEEE
Q 023822           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASD----DESIRLYDVTAA--T--CLKTINSKKYGVDLVCFTSHPTTVIY   93 (276)
Q Consensus        22 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~l~~   93 (276)
                      ..++....+.. ......++++|++++|.+..+    ++.|..|.+...  +  .+............++++|+++++++
T Consensus        25 g~l~~~~~~~~-~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~v  103 (345)
T PF10282_consen   25 GTLTLVQTVAE-GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYV  103 (345)
T ss_dssp             TEEEEEEEEEE-SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEE
T ss_pred             CCceEeeeecC-CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEE
Confidence            44555554433 344567899999999998876    568999988753  3  23333333445678999999999999


Q ss_pred             eccCCCCCceEEEEccCC-ceeee---ec----------ccCcceEEEEeccCCCEEEEeeC-CCeEEEEeccCce--ee
Q 023822           94 SSKNGWDESLRLLSLHDN-KYLRY---FK----------GHHDRVVSLSLCSSKDCFISGSL-DRTVLLWDQRAEK--CQ  156 (276)
Q Consensus        94 ~~~~~~d~~i~~~d~~~~-~~~~~---~~----------~~~~~i~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~--~~  156 (276)
                      +...  +|.|.++++... .....   +.          .......++.++|+++++++... ...|.+|++....  ..
T Consensus       104 any~--~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~  181 (345)
T PF10282_consen  104 ANYG--GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLT  181 (345)
T ss_dssp             EETT--TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEE
T ss_pred             EEcc--CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEE
Confidence            9864  899999999873 32221   11          12245678999999998777654 4579999997654  22


Q ss_pred             e--eE---eecCCCeeEecCCCcEEEEee--CCeEEEEecccCCCC--Ceeeee-ecC---CCCCceEEEECCCCcEEEE
Q 023822          157 G--LL---RVQGRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEKG--PFDIFS-VGG---DISDANVVKFSNDGRLMLL  223 (276)
Q Consensus       157 ~--~~---~~~~~~~~~~~~~~~~l~~~~--d~~i~~~d~~~~~~~--~~~~~~-~~~---~~~~i~~~~~~~~~~~l~~  223 (276)
                      .  .+   ...+.+.+.|+|+++++.+..  ++.|.+|++......  ...... ...   .......++++|+|++|++
T Consensus       182 ~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyv  261 (345)
T PF10282_consen  182 PVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYV  261 (345)
T ss_dssp             EEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEE
T ss_pred             EeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEE
Confidence            2  22   234456899999998887776  799999999832211  111111 111   1125678999999999888


Q ss_pred             ee-cCCcEEEEECC--CCcE--EEEeecCCCCCCceEEEEECCCCcEEEEecCC
Q 023822          224 TT-MEGHIHVLDSF--RGTL--LSTYNVKPVSRNSTLEASFSPEGMFVISGRVS  272 (276)
Q Consensus       224 ~~-~dg~i~i~d~~--~~~~--~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  272 (276)
                      +. ..+.|.+|++.  ++++  +..+.   ......+.++++|+|++|+++..+
T Consensus       262 snr~~~sI~vf~~d~~~g~l~~~~~~~---~~G~~Pr~~~~s~~g~~l~Va~~~  312 (345)
T PF10282_consen  262 SNRGSNSISVFDLDPATGTLTLVQTVP---TGGKFPRHFAFSPDGRYLYVANQD  312 (345)
T ss_dssp             EECTTTEEEEEEECTTTTTEEEEEEEE---ESSSSEEEEEE-TTSSEEEEEETT
T ss_pred             EeccCCEEEEEEEecCCCceEEEEEEe---CCCCCccEEEEeCCCCEEEEEecC
Confidence            76 45789999983  3443  23333   234558999999999999988754

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.75  E-value=3.9e-17  Score=117.36  Aligned_cols=203  Identities=19%  Similarity=0.145  Sum_probs=147.6

Q ss_pred             cceeec-cCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeee---------------------------eee----
Q 023822           26 VGMSFR-DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLK---------------------------TIN----   73 (276)
Q Consensus        26 ~~~~~~-~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---------------------------~~~----   73 (276)
                      ....++ .|...|+.+.--|+ ..|.+-+.|..+.+|++..+..+.                           .+.    
T Consensus        47 ~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgs  125 (323)
T KOG0322|consen   47 DLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGS  125 (323)
T ss_pred             cchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCccc
Confidence            334455 46778888888887 567788899999999975421100                           000    


Q ss_pred             ----------------------eeeeceEEEEEec-cC-CeEEEeccCCCCCceEEEEccCCc----------eeeeecc
Q 023822           74 ----------------------SKKYGVDLVCFTS-HP-TTVIYSSKNGWDESLRLLSLHDNK----------YLRYFKG  119 (276)
Q Consensus        74 ----------------------~~~~~v~~~~~~~-~~-~~l~~~~~~~~d~~i~~~d~~~~~----------~~~~~~~  119 (276)
                                            ...+.+.+..+.. .+ ..++.++..  +|.+.+||+.++.          .......
T Consensus       126 de~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyE--sghvv~wd~S~~~~~~~~~~~~kv~~~~as  203 (323)
T KOG0322|consen  126 DETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYE--SGHVVIWDLSTGDKIIQLPQSSKVESPNAS  203 (323)
T ss_pred             chhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEecc--CCeEEEEEccCCceeeccccccccccchhh
Confidence                                  0112344444322 22 334444433  9999999999873          3334457


Q ss_pred             cCcceEEEEeccCCCEEEEeeCCCeEEEEeccCc--ee----eeeEeecCCCeeEecCCCcEEEEee-CCeEEEEecccC
Q 023822          120 HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE--KC----QGLLRVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKY  192 (276)
Q Consensus       120 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~----~~~~~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~  192 (276)
                      |..+|.++.+.+.-..=++++.+..+..|.+...  .+    ...+...++..+.+-||+++++++. |+.|++|..++.
T Consensus       204 h~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl  283 (323)
T KOG0322|consen  204 HKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL  283 (323)
T ss_pred             ccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC
Confidence            8999999999886666678888888999988743  11    2233566788999999999999988 999999999997


Q ss_pred             CCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEEC
Q 023822          193 EKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDS  235 (276)
Q Consensus       193 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  235 (276)
                      ..    ...+..|...|++++|+|+...+|+++.|++|.+|++
T Consensus       284 ~p----LAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  284 NP----LAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             Cc----hhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            65    5556678899999999999999999999999999986

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.75  E-value=2.7e-18  Score=132.17  Aligned_cols=228  Identities=15%  Similarity=0.225  Sum_probs=180.2

Q ss_pred             CcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCcee
Q 023822           35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL  114 (276)
Q Consensus        35 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~  114 (276)
                      ..|..+.|-.+.+++|++ ...-++||| ..|..+..++.+. +|..+.|.|.--.|++++.   .|.++.-|+.+|+.+
T Consensus       171 Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtElHClk~~~-~v~rLeFLPyHfLL~~~~~---~G~L~Y~DVS~GklV  244 (545)
T KOG1272|consen  171 ETVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTELHCLKRHI-RVARLEFLPYHFLLVAASE---AGFLKYQDVSTGKLV  244 (545)
T ss_pred             hhhhhhhhhcchHHHHhh-hhceEEEec-CCCcEEeehhhcC-chhhhcccchhheeeeccc---CCceEEEeechhhhh
Confidence            456667777777788877 456799999 5677777777665 7999999999888888887   899999999999999


Q ss_pred             eeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-CCeEEEEeccc
Q 023822          115 RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARK  191 (276)
Q Consensus       115 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~  191 (276)
                      ..+....+.+..|+-+|-+..+-+|...|+|.+|...+.+++..+  |..++.++++.++|++++++. |..++|||++.
T Consensus       245 a~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~  324 (545)
T KOG1272|consen  245 ASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRN  324 (545)
T ss_pred             HHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecc
Confidence            999888899999999999889999999999999999988887766  888899999999999999988 99999999998


Q ss_pred             CCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEE-CCC--CcEEEEeecCCCCCCceEEEEECCCCcEEEE
Q 023822          192 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD-SFR--GTLLSTYNVKPVSRNSTLEASFSPEGMFVIS  268 (276)
Q Consensus       192 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d-~~~--~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  268 (276)
                      ...    ...... +.+...+++|..|  +++.+....|.||. .-.  +..-..+-.+. ..++|.++.|.|-...|-.
T Consensus       325 ~~q----l~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~-~~~~V~~l~FcP~EDvLGI  396 (545)
T KOG1272|consen  325 FYQ----LHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHR-CGGPVEDLRFCPYEDVLGI  396 (545)
T ss_pred             ccc----cceeec-CCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhc-cCcccccceeccHHHeeec
Confidence            663    323222 3467788898776  34445556899995 222  22222333332 4568999999998888888


Q ss_pred             ecCCCCCC
Q 023822          269 GRVSPFSS  276 (276)
Q Consensus       269 ~~~dg~vs  276 (276)
                      |-..|+.|
T Consensus       397 GH~~G~ts  404 (545)
T KOG1272|consen  397 GHAGGITS  404 (545)
T ss_pred             cccCCcee
Confidence            87777643

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.74  E-value=4.6e-16  Score=112.85  Aligned_cols=150  Identities=12%  Similarity=0.207  Sum_probs=112.5

Q ss_pred             EEEEEcCCCCEEEEeec----------CCeEEEEEcc-CCeeeeeeee-eeeceEEEEEeccCCeEEEeccCCCCCceEE
Q 023822           38 SSMDFHKSSSYLVTASD----------DESIRLYDVT-AATCLKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWDESLRL  105 (276)
Q Consensus        38 ~~~~~~~~~~~l~~~~~----------d~~i~iwd~~-~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~  105 (276)
                      ..+.|+|+|++|+.-..          -+...+|.++ .+.....+.. ..++|.+++|+|+++.+++.... .+..|.+
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~-~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGS-MPAKVTL   87 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEcc-CCcccEE
Confidence            35889999998775433          1345555553 2334444443 34579999999999998766421 1679999


Q ss_pred             EEccCCceeeeecccCcceEEEEeccCCCEEEEeeCC---CeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEee--
Q 023822          106 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLD---RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF--  180 (276)
Q Consensus       106 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--  180 (276)
                      ||++ ++.+..+.  ...+..+.|+|+|+++++++.+   |.|.+||+++.+.+..........++|+|+|++++++.  
T Consensus        88 yd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t~  164 (194)
T PF08662_consen   88 YDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATATTS  164 (194)
T ss_pred             EcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEEEec
Confidence            9996 55566654  5667899999999999998753   67999999999988888777788999999999998875  


Q ss_pred             -----CCeEEEEeccc
Q 023822          181 -----GGYIRMFDARK  191 (276)
Q Consensus       181 -----d~~i~~~d~~~  191 (276)
                           |+.+++|+...
T Consensus       165 ~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  165 PRLRVDNGFKIWSFQG  180 (194)
T ss_pred             cceeccccEEEEEecC
Confidence                 67888998864

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.74  E-value=1.4e-15  Score=129.91  Aligned_cols=217  Identities=13%  Similarity=0.131  Sum_probs=157.4

Q ss_pred             ccccceeeccCCCcEEEEEEcCCC-CEEEEeecCCeEEEEEccCC-------eeeeeeeeeeeceEEEEEeccCCeEEEe
Q 023822           23 SMEVGMSFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAA-------TCLKTINSKKYGVDLVCFTSHPTTVIYS   94 (276)
Q Consensus        23 ~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~   94 (276)
                      ....+..+..|...|..++.+++. .++++||.||+|++||...-       +...++.....++.++...+.+..++++
T Consensus      1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred             cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence            345667788999999999998754 99999999999999998631       2334455456789999999999999999


Q ss_pred             ccCCCCCceEEEEccCCc-------eeeeeccc-CcceEEE-Eecc-CC-CEEEEeeCCCeEEEEeccCceeeeeE----
Q 023822           95 SKNGWDESLRLLSLHDNK-------YLRYFKGH-HDRVVSL-SLCS-SK-DCFISGSLDRTVLLWDQRAEKCQGLL----  159 (276)
Q Consensus        95 ~~~~~d~~i~~~d~~~~~-------~~~~~~~~-~~~i~~~-~~~~-~~-~~l~~~~~d~~i~iwd~~~~~~~~~~----  159 (276)
                      +.   ||.|.+.+++..+       ..+..+.+ .+.+.+| +|.. .+ ..++.+...+.|..||+++......+    
T Consensus      1117 t~---DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1117 TK---DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred             cC---CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc
Confidence            88   9999999987621       11111112 2233333 3332 22 37888888999999999987655444    


Q ss_pred             eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCC---cEEEEee--cCCcEEEE
Q 023822          160 RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG---RLMLLTT--MEGHIHVL  233 (276)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~--~dg~i~i~  233 (276)
                      ..+-+.+++.+|.+.+++.|+ .|.+.+||+|-...  ......+ +..++..+..+|-.   ...++++  ..+.|.+|
T Consensus      1194 ~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~--i~sw~~P-~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVP--ILSWEHP-ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred             cccceeEEEecCCceEEEEecCCceEEEEEeecCce--eecccCc-ccCCcceEEeeccCCCCceEEEecccCCCceeee
Confidence            455678999999999999998 79999999997442  2233333 34678888877742   4454444  56789999


Q ss_pred             ECCCCcEEEEee
Q 023822          234 DSFRGTLLSTYN  245 (276)
Q Consensus       234 d~~~~~~~~~~~  245 (276)
                      ++.+|.....+.
T Consensus      1271 n~~~g~~~~vl~ 1282 (1431)
T KOG1240|consen 1271 NMETGLRQTVLW 1282 (1431)
T ss_pred             ecccCcceEEEE
Confidence            999998777765

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.74  E-value=3.7e-16  Score=113.91  Aligned_cols=190  Identities=13%  Similarity=0.197  Sum_probs=140.5

Q ss_pred             ccCCCcEEEEEEcC-CCCEEEEeecCCeEEEEEccCCe---eeeeeeeeeeceEEEEEeccCC-eEEEeccCCCCCceEE
Q 023822           31 RDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAAT---CLKTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDESLRL  105 (276)
Q Consensus        31 ~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~d~~i~~  105 (276)
                      ..+..++++..|+. +.+++.+++-|-+..|||++++.   ....+-.|..+|..++|...+. .+++.+.   ||.+++
T Consensus       147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvga---DGSvRm  223 (364)
T KOG0290|consen  147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGA---DGSVRM  223 (364)
T ss_pred             cccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecC---CCcEEE
Confidence            35678999999998 77899999999999999999863   4667889999999999998654 5666676   999999


Q ss_pred             EEccCCceeeeec---ccCcceEEEEeccCC-CEEEEeeCC-CeEEEEeccCce-eeeeE--eecCCCeeEecCCC--cE
Q 023822          106 LSLHDNKYLRYFK---GHHDRVVSLSLCSSK-DCFISGSLD-RTVLLWDQRAEK-CQGLL--RVQGRPAAAYDDQG--LV  175 (276)
Q Consensus       106 ~d~~~~~~~~~~~---~~~~~i~~~~~~~~~-~~l~~~~~d-~~i~iwd~~~~~-~~~~~--~~~~~~~~~~~~~~--~~  175 (276)
                      ||++.-+.-..+.   ....+...++|+++. +++|+-..| ..|.+.|+|... ++..+  |...++.++|.|..  .+
T Consensus       224 FDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hi  303 (364)
T KOG0290|consen  224 FDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHI  303 (364)
T ss_pred             EEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCcee
Confidence            9998765433332   224577889998854 477766555 469999999764 34445  66778999999975  34


Q ss_pred             EEEeeCCeEEEEecccCCC----CCeeeeeecCCCCCceEEEECCC-CcEEEEeec
Q 023822          176 FAVAFGGYIRMFDARKYEK----GPFDIFSVGGDISDANVVKFSND-GRLMLLTTM  226 (276)
Q Consensus       176 l~~~~d~~i~~~d~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~  226 (276)
                      ..+|.|.++.+||+.....    .++..+.   ..++|+.+.|++. +..++.+..
T Consensus       304 ctaGDD~qaliWDl~q~~~~~~~dPilay~---a~~EVNqi~Ws~~~~Dwiai~~~  356 (364)
T KOG0290|consen  304 CTAGDDCQALIWDLQQMPRENGEDPILAYT---AGGEVNQIQWSSSQPDWIAICFG  356 (364)
T ss_pred             eecCCcceEEEEecccccccCCCCchhhhh---ccceeeeeeecccCCCEEEEEec
Confidence            4444489999999987543    1222222   4468999999974 566766643

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.74  E-value=5.7e-15  Score=121.38  Aligned_cols=223  Identities=9%  Similarity=0.083  Sum_probs=148.1

Q ss_pred             eeeccCCCcEEEEEEcCCCCEEEEeecC---CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceE
Q 023822           28 MSFRDYNGRISSMDFHKSSSYLVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (276)
Q Consensus        28 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~  104 (276)
                      +.+..+...+...+|+|||+.|+..+.+   ..|.+||+.+++... +....+.+....|+|+++.++.....+.+..|+
T Consensus       192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy  270 (430)
T PRK00178        192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIY  270 (430)
T ss_pred             eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEE
Confidence            4455667789999999999999876643   369999998876533 322334456789999999988654322244788


Q ss_pred             EEEccCCceeeeecccCcceEEEEeccCCCEEEEeeC-CC--eEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee
Q 023822          105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DR--TVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF  180 (276)
Q Consensus       105 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~  180 (276)
                      +||+.+++.. .+..+........|+|+++.++..+. ++  .|+++|+.+++..... .........|+|+++.++...
T Consensus       271 ~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~  349 (430)
T PRK00178        271 VMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVH  349 (430)
T ss_pred             EEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEE
Confidence            9999887644 34445556677899999997766554 33  5778888777644332 222234578999998887766


Q ss_pred             --CC--eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecC---CcEEEEECCCCcEEEEeecCCCCCCc
Q 023822          181 --GG--YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME---GHIHVLDSFRGTLLSTYNVKPVSRNS  253 (276)
Q Consensus       181 --d~--~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~  253 (276)
                        ++  .|.++|+.+++.   ......   .......|+|+|+.++..+.+   ..|.++++. +.....+.   .+.+.
T Consensus       350 ~~~~~~~l~~~dl~tg~~---~~lt~~---~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~---~~~g~  419 (430)
T PRK00178        350 RQDGNFHVAAQDLQRGSV---RILTDT---SLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLP---TAQGE  419 (430)
T ss_pred             ccCCceEEEEEECCCCCE---EEccCC---CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECc---CCCCC
Confidence              33  588899887542   111111   122346899999998877654   347777764 44444554   24556


Q ss_pred             eEEEEECCC
Q 023822          254 TLEASFSPE  262 (276)
Q Consensus       254 v~~~~~s~~  262 (276)
                      +...+|+|-
T Consensus       420 ~~~p~ws~~  428 (430)
T PRK00178        420 VREPSWSPY  428 (430)
T ss_pred             cCCCccCCC
Confidence            777888874

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.74  E-value=2.7e-15  Score=111.39  Aligned_cols=236  Identities=11%  Similarity=0.073  Sum_probs=166.1

Q ss_pred             eeeccCCCcEEEEEEcCCCC-EEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCC--------
Q 023822           28 MSFRDYNGRISSMDFHKSSS-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG--------   98 (276)
Q Consensus        28 ~~~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~--------   98 (276)
                      ..+.....++.+++|||||+ .|.+...|-.|.+|.+.+.+... ++-.+..+..++|+|++++.+.++...        
T Consensus        85 ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~  163 (447)
T KOG4497|consen   85 CKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQIS  163 (447)
T ss_pred             EEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecccHHHHHHHH
Confidence            34556678899999999995 55667778899999998766433 333445678999999999988876521        


Q ss_pred             -------------------------CCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCc
Q 023822           99 -------------------------WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE  153 (276)
Q Consensus        99 -------------------------~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  153 (276)
                                               .+..+.+||.--.-.+..+. -.-.+..++|+|.+++|+.|+.|+.+++.+--+-
T Consensus       164 ~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tW  242 (447)
T KOG4497|consen  164 SCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTW  242 (447)
T ss_pred             hhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeee
Confidence                                     03445666632222222222 2346888999999999999999999887542211


Q ss_pred             ee------------------------------------------------------------eeeEe--------ecCCC
Q 023822          154 KC------------------------------------------------------------QGLLR--------VQGRP  165 (276)
Q Consensus       154 ~~------------------------------------------------------------~~~~~--------~~~~~  165 (276)
                      +.                                                            .+.++        ..++.
T Consensus       243 k~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g  322 (447)
T KOG4497|consen  243 KPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAG  322 (447)
T ss_pred             eehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccc
Confidence            10                                                            00000        01122


Q ss_pred             eeEecCCCcEEEEeeC---CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEE
Q 023822          166 AAAYDDQGLVFAVAFG---GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS  242 (276)
Q Consensus       166 ~~~~~~~~~~l~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  242 (276)
                      -++|++|..++++-.|   +.+-+||++..+.     +..-....+|....|+|....|+.+.....+++|...-...+.
T Consensus       323 ~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l-----~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~  397 (447)
T KOG4497|consen  323 KLAFSCDSTYAATRNDKYPNALWLWDLQNLKL-----HAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVG  397 (447)
T ss_pred             eeeecCCceEEeeecCCCCceEEEEechhhhh-----hhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEe
Confidence            5899999999999885   6899999998553     3333345589999999998888888878889999976544443


Q ss_pred             EeecCCCCCCceEEEEECCCCcEEEEecCCCC
Q 023822          243 TYNVKPVSRNSTLEASFSPEGMFVISGRVSPF  274 (276)
Q Consensus       243 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~  274 (276)
                      .-    +..-.|.++.|.-+|..++..+.|.+
T Consensus       398 vP----~~GF~i~~l~W~~~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  398 VP----KKGFNIQKLQWLQPGEFIVLCGKDAF  425 (447)
T ss_pred             cC----CCCceeeeEEecCCCcEEEEEcCCce
Confidence            33    24578999999999999999999865

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.73  E-value=4.2e-15  Score=121.88  Aligned_cols=206  Identities=16%  Similarity=0.132  Sum_probs=140.6

Q ss_pred             CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCE
Q 023822           56 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC  135 (276)
Q Consensus        56 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  135 (276)
                      ..|.++|.... ....+..+...+....|+|++++++.+...+....|++||+.+++... +..+...+.+++|+|+++.
T Consensus       170 ~~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~  247 (417)
T TIGR02800       170 YELQVADYDGA-NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSK  247 (417)
T ss_pred             ceEEEEcCCCC-CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence            36888887533 344455556678899999999999988753324689999998876543 3335566677999999987


Q ss_pred             EEE-eeCCC--eEEEEeccCceeeeeEee-cCCCeeEecCCCcEEEEee--C--CeEEEEecccCCCCCeeeeeecCCCC
Q 023822          136 FIS-GSLDR--TVLLWDQRAEKCQGLLRV-QGRPAAAYDDQGLVFAVAF--G--GYIRMFDARKYEKGPFDIFSVGGDIS  207 (276)
Q Consensus       136 l~~-~~~d~--~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~--d--~~i~~~d~~~~~~~~~~~~~~~~~~~  207 (276)
                      |+. .+.++  .|++||+.+++....... .......|+|+++.++...  +  ..|+++|+.+.+.     ..+..+..
T Consensus       248 l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-----~~l~~~~~  322 (417)
T TIGR02800       248 LAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-----RRLTFRGG  322 (417)
T ss_pred             EEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-----EEeecCCC
Confidence            664 44444  588999987765443322 2234678999998776555  2  3688888775432     22222334


Q ss_pred             CceEEEECCCCcEEEEeecCC---cEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCC
Q 023822          208 DANVVKFSNDGRLMLLTTMEG---HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       208 ~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  273 (276)
                      ......|+|+|++++.++.++   .|.+||+.++... .+..    ........|+|||++|+..+.++
T Consensus       323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~----~~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTD----TGLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccC----CCCCCCceECCCCCEEEEEEeCC
Confidence            567789999999999888775   7899998876543 3321    12234568999999888877654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.73  E-value=5.8e-15  Score=121.09  Aligned_cols=220  Identities=13%  Similarity=0.159  Sum_probs=146.3

Q ss_pred             eeeccCCCcEEEEEEcCCCCEEEEeecC---CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceE
Q 023822           28 MSFRDYNGRISSMDFHKSSSYLVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (276)
Q Consensus        28 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~  104 (276)
                      +.+..+...+...+|+|||++|+.++.+   ..|++||+.+++... +..+...+..++|+|+++.++.......+..|+
T Consensus       183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~  261 (417)
T TIGR02800       183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIY  261 (417)
T ss_pred             EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEE
Confidence            4455666778999999999999887643   479999998876533 333445567789999999887654322245699


Q ss_pred             EEEccCCceeeeecccCcceEEEEeccCCCEEEEeeC-CC--eEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee
Q 023822          105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DR--TVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF  180 (276)
Q Consensus       105 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~  180 (276)
                      +||+.+++.. .+..+........|+|+++.|+..+. ++  .|+++|+.+++..... .........|+|++++++.+.
T Consensus       262 ~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~  340 (417)
T TIGR02800       262 VMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVH  340 (417)
T ss_pred             EEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEE
Confidence            9998877543 34445555567789999998876654 33  5888888776644333 334456789999998887776


Q ss_pred             -CC---eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCC---cEEEEECCCCcEEEEeecCCCCCCc
Q 023822          181 -GG---YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG---HIHVLDSFRGTLLSTYNVKPVSRNS  253 (276)
Q Consensus       181 -d~---~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~  253 (276)
                       ++   .|.+||+.+...   ....  .. .......|+|+|++|+..+.++   .+.+.+. +++....+.   ...+.
T Consensus       341 ~~~~~~~i~~~d~~~~~~---~~l~--~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~---~~~g~  410 (417)
T TIGR02800       341 REGGGFNIAVMDLDGGGE---RVLT--DT-GLDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLP---LGNGD  410 (417)
T ss_pred             ccCCceEEEEEeCCCCCe---EEcc--CC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECC---CCCCC
Confidence             43   788999876432   1111  11 1234568999999888877654   3556563 455555554   23445


Q ss_pred             eEEEEE
Q 023822          254 TLEASF  259 (276)
Q Consensus       254 v~~~~~  259 (276)
                      +..++|
T Consensus       411 ~~~~~w  416 (417)
T TIGR02800       411 VREPAW  416 (417)
T ss_pred             cCCCCC
Confidence            555555

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=7.8e-15  Score=120.37  Aligned_cols=221  Identities=11%  Similarity=0.078  Sum_probs=143.2

Q ss_pred             eccCCCcEEEEEEcCCCCEEEEeecC---CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEE
Q 023822           30 FRDYNGRISSMDFHKSSSYLVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL  106 (276)
Q Consensus        30 ~~~h~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~  106 (276)
                      +..+...+.+..|+|||+.|+..+.+   ..|++||+.+++... +...........|+|+++.++..........|+++
T Consensus       213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~  291 (448)
T PRK04792        213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVV  291 (448)
T ss_pred             eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEE
Confidence            44456678899999999998876543   268899998776432 22222334578999999988875432113358888


Q ss_pred             EccCCceeeeecccCcceEEEEeccCCCEEEEeeC-CC--eEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee--
Q 023822          107 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DR--TVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF--  180 (276)
Q Consensus       107 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~--  180 (276)
                      |+.+++.. .+..+.......+|+||++.++..+. ++  .|+++|+.+++..... .........|+|+++.++...  
T Consensus       292 dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~  370 (448)
T PRK04792        292 DIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRT  370 (448)
T ss_pred             ECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEec
Confidence            98877643 44445556678899999997766553 33  5777788776644332 223334578999998887765  


Q ss_pred             CC--eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecC-C--cEEEEECCCCcEEEEeecCCCCCCceE
Q 023822          181 GG--YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME-G--HIHVLDSFRGTLLSTYNVKPVSRNSTL  255 (276)
Q Consensus       181 d~--~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~v~  255 (276)
                      ++  .|.++|+.+++.   ....  .. .......|+|+|+.|+..+.+ +  .+.+++. +|+....+.   .+.+.+.
T Consensus       371 ~g~~~I~~~dl~~g~~---~~lt--~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~---~~~g~~~  440 (448)
T PRK04792        371 NGKFNIARQDLETGAM---QVLT--ST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLP---AGQGEVK  440 (448)
T ss_pred             CCceEEEEEECCCCCe---EEcc--CC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECc---CCCCCcC
Confidence            33  566677766442   1111  11 112245899999988776543 3  3777786 666666665   3456677


Q ss_pred             EEEECCC
Q 023822          256 EASFSPE  262 (276)
Q Consensus       256 ~~~~s~~  262 (276)
                      ..+|+|-
T Consensus       441 ~p~Wsp~  447 (448)
T PRK04792        441 SPAWSPF  447 (448)
T ss_pred             CCccCCC
Confidence            7888873

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.72  E-value=3.7e-15  Score=122.14  Aligned_cols=215  Identities=11%  Similarity=0.056  Sum_probs=150.6

Q ss_pred             CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCce--eee----ecccCcceEEEEe
Q 023822           56 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY--LRY----FKGHHDRVVSLSL  129 (276)
Q Consensus        56 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~--~~~----~~~~~~~i~~~~~  129 (276)
                      +.+.+|+++........-.....|.++.|+|....+++++..  +|+|.+||++.+..  ...    ...|..++..+.|
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y--~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW  299 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCY--NGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW  299 (555)
T ss_pred             ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeecc--CceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence            478999998763333333345689999999977666665542  99999999987754  222    2358899999999


Q ss_pred             ccCCC--EEEEeeCCCeEEEEeccCceeeeeE--------------eecCCCeeEecCCC--cEEEEeeCCeEEEEeccc
Q 023822          130 CSSKD--CFISGSLDRTVLLWDQRAEKCQGLL--------------RVQGRPAAAYDDQG--LVFAVAFGGYIRMFDARK  191 (276)
Q Consensus       130 ~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~--------------~~~~~~~~~~~~~~--~~l~~~~d~~i~~~d~~~  191 (276)
                      ..+..  -|++++.||.|..|+++.-......              ...++.++.|.+..  ++++++.+|.|..-+...
T Consensus       300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g  379 (555)
T KOG1587|consen  300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG  379 (555)
T ss_pred             eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence            76544  4999999999999998754331111              12335578887744  444444479888755444


Q ss_pred             CCCCC----eeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECC-CCcEEEEeecCCCCCCceEEEEECCCC-cE
Q 023822          192 YEKGP----FDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF-RGTLLSTYNVKPVSRNSTLEASFSPEG-MF  265 (276)
Q Consensus       192 ~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~  265 (276)
                      .+...    ........|.++|..+.++|=+..++..+.|-+++||... ...++..+.   .+...+++++|||.- ..
T Consensus       380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~---~~~~~v~~vaWSptrpav  456 (555)
T KOG1587|consen  380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLD---SSPDYVTDVAWSPTRPAV  456 (555)
T ss_pred             CcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhh---hccceeeeeEEcCcCceE
Confidence            33322    1122455678899999999977555555559999999987 667777776   466779999999976 56


Q ss_pred             EEEecCCCCC
Q 023822          266 VISGRVSPFS  275 (276)
Q Consensus       266 l~~~~~dg~v  275 (276)
                      ++++..||.+
T Consensus       457 F~~~d~~G~l  466 (555)
T KOG1587|consen  457 FATVDGDGNL  466 (555)
T ss_pred             EEEEcCCCce
Confidence            7888888864

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.71  E-value=1.2e-13  Score=104.14  Aligned_cols=240  Identities=12%  Similarity=0.142  Sum_probs=167.3

Q ss_pred             cCCCcEEEEEEcCCCCEEEEeecC---CeEEEEEccC--Ceee--eeeeeeeeceEEEEEeccCCeEEEeccCCCCCceE
Q 023822           32 DYNGRISSMDFHKSSSYLVTASDD---ESIRLYDVTA--ATCL--KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (276)
Q Consensus        32 ~h~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~--~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~  104 (276)
                      .+.+.++-|+|+|+++.|.++-.+   |.|..|.++.  |+..  ........+.+.+++++++++++++...  .|.|.
T Consensus        37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~--~g~v~  114 (346)
T COG2706          37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYH--SGSVS  114 (346)
T ss_pred             cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEcc--CceEE
Confidence            356778899999999999888654   6777777764  4432  2222233345889999999999999885  79999


Q ss_pred             EEEccC-Cceee--eecccCcc----------eEEEEeccCCCEEEEeeC-CCeEEEEeccCceeeeeE-----eecCCC
Q 023822          105 LLSLHD-NKYLR--YFKGHHDR----------VVSLSLCSSKDCFISGSL-DRTVLLWDQRAEKCQGLL-----RVQGRP  165 (276)
Q Consensus       105 ~~d~~~-~~~~~--~~~~~~~~----------i~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~-----~~~~~~  165 (276)
                      ++-++. |....  ....|.+.          +....+.|++++|++.+. -.+|.+|++..++....-     ...+.+
T Consensus       115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPR  194 (346)
T COG2706         115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPR  194 (346)
T ss_pred             EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcc
Confidence            999865 32211  12224444          788899999999888765 347999999976544322     455678


Q ss_pred             eeEecCCCcEEEEee--CCeEEEEecccCCC--CCeeeee-ec---CCCCCceEEEECCCCcEEEEeec-CCcEEEEECC
Q 023822          166 AAAYDDQGLVFAVAF--GGYIRMFDARKYEK--GPFDIFS-VG---GDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSF  236 (276)
Q Consensus       166 ~~~~~~~~~~l~~~~--d~~i~~~d~~~~~~--~~~~~~~-~~---~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~  236 (276)
                      .+.|+|++++..+-.  +++|.+|.......  ..++... ++   ........|.++|||++|+++.. ...|.+|.+.
T Consensus       195 Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~  274 (346)
T COG2706         195 HIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD  274 (346)
T ss_pred             eEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            999999999988777  89999999887421  1111111 11   12345677999999999998753 3478888765


Q ss_pred             CC-cEEEEeecCCCCCCceEEEEECCCCcEEEEecCCC
Q 023822          237 RG-TLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       237 ~~-~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  273 (276)
                      .. ..+......+.+....+.+.|+|+|++|+++..++
T Consensus       275 ~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~s  312 (346)
T COG2706         275 PDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKS  312 (346)
T ss_pred             CCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCC
Confidence            33 33433333223445588999999999999998875

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.71  E-value=1.5e-15  Score=119.35  Aligned_cols=212  Identities=13%  Similarity=0.161  Sum_probs=144.4

Q ss_pred             EEEEcCCCCEEEEeecCCeEEEEEccCCee----eeeeeeeeeceEEEEE-----eccCCeEEEeccCCCCCceEEEEcc
Q 023822           39 SMDFHKSSSYLVTASDDESIRLYDVTAATC----LKTINSKKYGVDLVCF-----TSHPTTVIYSSKNGWDESLRLLSLH  109 (276)
Q Consensus        39 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~v~~~~~-----~~~~~~l~~~~~~~~d~~i~~~d~~  109 (276)
                      ...++-.|.+|+-.- ...+++|+...+..    +....-......+-.|     .+.+--++++-.   -|.+.+.|..
T Consensus       128 ~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~---tGqvq~idp~  203 (636)
T KOG2394|consen  128 NTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFT---TGQVQLIDPI  203 (636)
T ss_pred             eccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeec---cCceEEecch
Confidence            333344555554432 24588888764321    1111111112333334     345556777776   8899999876


Q ss_pred             CCceeeeec----ccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCc--------------e--------------ee
Q 023822          110 DNKYLRYFK----GHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAE--------------K--------------CQ  156 (276)
Q Consensus       110 ~~~~~~~~~----~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~--------------~--------------~~  156 (276)
                      ..+..+.+.    -.+..++++.|-|.+. .|+.+-.+|.+++||....              .              ++
T Consensus       204 ~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv  283 (636)
T KOG2394|consen  204 NFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPV  283 (636)
T ss_pred             hhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCcc
Confidence            643222121    1246799999998554 7778888999999975311              0              01


Q ss_pred             eeE--eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEE
Q 023822          157 GLL--RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL  233 (276)
Q Consensus       157 ~~~--~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  233 (276)
                      ..+  -...+...+|+|||++||+-+ ||.++|||..+.+.    .-.+...-+...|++|||||+|+++|++|--|.||
T Consensus       284 ~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eL----lg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVw  359 (636)
T KOG2394|consen  284 ARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQEL----LGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVW  359 (636)
T ss_pred             ceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHH----HHHHHhhccceEEEEEcCCccEEEecCCcceEEEE
Confidence            111  123456789999999998888 99999999987553    22233444678999999999999999999999999


Q ss_pred             ECCCCcEEEEeecCCCCCCceEEEEECC
Q 023822          234 DSFRGTLLSTYNVKPVSRNSTLEASFSP  261 (276)
Q Consensus       234 d~~~~~~~~~~~~~~~~~~~v~~~~~s~  261 (276)
                      .+..++.+..-.   +|+++|..++|.|
T Consensus       360 Sf~erRVVARGq---GHkSWVs~VaFDp  384 (636)
T KOG2394|consen  360 SFEERRVVARGQ---GHKSWVSVVAFDP  384 (636)
T ss_pred             EeccceEEEecc---ccccceeeEeecc
Confidence            999999999988   8999999999997

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.70  E-value=9.8e-16  Score=129.11  Aligned_cols=199  Identities=18%  Similarity=0.222  Sum_probs=150.7

Q ss_pred             EEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeee-eeceEEEEEec-cCCeEEEeccCCCCCceEEEEccCCc---
Q 023822           38 SSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSK-KYGVDLVCFTS-HPTTVIYSSKNGWDESLRLLSLHDNK---  112 (276)
Q Consensus        38 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~-~~~~l~~~~~~~~d~~i~~~d~~~~~---  112 (276)
                      .-++|.....+|++++.-..|+|||....++...+... ...++++.-+. .++.+++|..   ||.|++||.+...   
T Consensus      1169 ~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfa---DGsvRvyD~R~a~~ds 1245 (1387)
T KOG1517|consen 1169 LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFA---DGSVRVYDRRMAPPDS 1245 (1387)
T ss_pred             eeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeec---CCceEEeecccCCccc
Confidence            44678876667777777889999999988877776543 34566665554 3577888877   9999999987653   


Q ss_pred             eeeeecccCcc--eEEEEeccCCC-EEEEeeCCCeEEEEeccCceeeeeE--e-----ecCCCeeEecCCCcEEEEeeCC
Q 023822          113 YLRYFKGHHDR--VVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLL--R-----VQGRPAAAYDDQGLVFAVAFGG  182 (276)
Q Consensus       113 ~~~~~~~~~~~--i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~--~-----~~~~~~~~~~~~~~~l~~~~d~  182 (276)
                      .+..++.|+..  |..+.+.++|- .|++|+.||.|++||+|.......+  .     +....++..+++..++++|+.+
T Consensus      1246 ~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q 1325 (1387)
T KOG1517|consen 1246 LVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQ 1325 (1387)
T ss_pred             cceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcc
Confidence            46677889887  99999998775 5999999999999999985322222  1     1237889999999999999999


Q ss_pred             eEEEEecccCCCCCeeee--eecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCc
Q 023822          183 YIRMFDARKYEKGPFDIF--SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT  239 (276)
Q Consensus       183 ~i~~~d~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  239 (276)
                      .|+||++.......+...  .+......+.+++|+|-.-.+|+|+.|..|.||......
T Consensus      1326 ~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1326 LIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             eEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence            999999976543322211  122334567999999999899999999999999876543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=4.5e-14  Score=116.06  Aligned_cols=204  Identities=12%  Similarity=0.121  Sum_probs=134.5

Q ss_pred             eEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEE
Q 023822           57 SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF  136 (276)
Q Consensus        57 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  136 (276)
                      .|.++|.+.+. ...+..+...+....|+|+++.|+..+.......|.+||+.+++... +....+.+....|+|+|+.|
T Consensus       180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l  257 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL  257 (430)
T ss_pred             EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence            47778876444 34455556678999999999999887653224579999998876543 33334445678999999977


Q ss_pred             E-EeeCCC--eEEEEeccCceeeeeEe-ecCCCeeEecCCCcEEEEee--C--CeEEEEecccCCCCCeeeeeecCCCCC
Q 023822          137 I-SGSLDR--TVLLWDQRAEKCQGLLR-VQGRPAAAYDDQGLVFAVAF--G--GYIRMFDARKYEKGPFDIFSVGGDISD  208 (276)
Q Consensus       137 ~-~~~~d~--~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~--d--~~i~~~d~~~~~~~~~~~~~~~~~~~~  208 (276)
                      + +...++  .|++||+.+++...... ........|+|+++.++..+  +  ..|+++|+.+++..   ......  ..
T Consensus       258 a~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~---~lt~~~--~~  332 (430)
T PRK00178        258 AFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE---RVTFVG--NY  332 (430)
T ss_pred             EEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE---EeecCC--CC
Confidence            6 444454  68888998876544332 22344678999998776655  2  35777777664421   112111  23


Q ss_pred             ceEEEECCCCcEEEEeecC-C--cEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCC
Q 023822          209 ANVVKFSNDGRLMLLTTME-G--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVS  272 (276)
Q Consensus       209 i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  272 (276)
                      .....|+|+|++|+..+.+ +  .|.++|+.+++... +..    ........|+|||++++..+.+
T Consensus       333 ~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~----~~~~~~p~~spdg~~i~~~~~~  394 (430)
T PRK00178        333 NARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD----TSLDESPSVAPNGTMLIYATRQ  394 (430)
T ss_pred             ccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC----CCCCCCceECCCCCEEEEEEec
Confidence            3457899999999887643 3  58889998876533 331    1122246899999998876654

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.69  E-value=9.5e-16  Score=120.42  Aligned_cols=162  Identities=10%  Similarity=0.131  Sum_probs=116.3

Q ss_pred             CCcEEEEEEcC-CCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCc
Q 023822           34 NGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK  112 (276)
Q Consensus        34 ~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~  112 (276)
                      +..|+|+.|-| +...++.+-.+|.++++|.+.       .... .-.+....+++..+.....   .+      -.+..
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~-------~~~~-t~p~~~~~k~~~~f~i~t~---ks------k~~rN  281 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI-------VCGA-TAPSYQALKDGDQFAILTS---KS------KKTRN  281 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccc-------cccC-CCCcccccCCCCeeEEeee---ec------cccCC
Confidence            47899999998 445667777889999998621       1000 0111122234444443322   00      11223


Q ss_pred             eeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-CCeEEEEec
Q 023822          113 YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDA  189 (276)
Q Consensus       113 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~  189 (276)
                      ++..+..-.+.|...+|+|||++||+.++||.++|+|..+.+....+  -..+..|++|+|||++++++. |.-|.||.+
T Consensus       282 Pv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf  361 (636)
T KOG2394|consen  282 PVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSF  361 (636)
T ss_pred             ccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEe
Confidence            44444445668999999999999999999999999999998876665  456678999999999999998 899999999


Q ss_pred             ccCCCCCeeeeeecCCCCCceEEEECC
Q 023822          190 RKYEKGPFDIFSVGGDISDANVVKFSN  216 (276)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~i~~~~~~~  216 (276)
                      ...+.    +..-.+|..+|+.++|.|
T Consensus       362 ~erRV----VARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  362 EERRV----VARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             ccceE----EEeccccccceeeEeecc
Confidence            87553    666788999999999983

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=1.4e-15  Score=115.44  Aligned_cols=195  Identities=14%  Similarity=0.152  Sum_probs=147.4

Q ss_pred             eeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccC------Cceeeeec-ccCcceEEEEeccCCCEEEEeeCC
Q 023822           70 KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD------NKYLRYFK-GHHDRVVSLSLCSSKDCFISGSLD  142 (276)
Q Consensus        70 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~------~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d  142 (276)
                      +.+..|.+.|.++.|+.++++|++|+.   |..+++|++..      .+++.... .|...|.|++|....+.+++|..+
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGD---D~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~  126 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGD---DMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW  126 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCC---cceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence            345678999999999999999999998   99999999753      35555443 356899999999989999999999


Q ss_pred             CeEEEEeccCceeeeeE-e---ecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCC
Q 023822          143 RTVLLWDQRAEKCQGLL-R---VQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND  217 (276)
Q Consensus       143 ~~i~iwd~~~~~~~~~~-~---~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  217 (276)
                      ++|...|+++.+.+..+ +   ...+..+..+|....+++.+ ++.|.+||.+.... +...+...........+.|+|.
T Consensus       127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~-~~~~~~~AN~~~~F~t~~F~P~  205 (609)
T KOG4227|consen  127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQN-PISLVLPANSGKNFYTAEFHPE  205 (609)
T ss_pred             ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCC-CCceeeecCCCccceeeeecCC
Confidence            99999999999988888 2   23577888899887777777 89999999987553 3345555566677889999997


Q ss_pred             C-cEEEEeecCCcEEEEECCCCcE-EEEeecCCCCCC---ceEEEEECCCCcEEEE
Q 023822          218 G-RLMLLTTMEGHIHVLDSFRGTL-LSTYNVKPVSRN---STLEASFSPEGMFVIS  268 (276)
Q Consensus       218 ~-~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~---~v~~~~~s~~g~~l~~  268 (276)
                      . .+|++.+..+-+.+||.+.... +.......+...   .-.++.|+|+|..|.+
T Consensus       206 ~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~ms  261 (609)
T KOG4227|consen  206 TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMS  261 (609)
T ss_pred             CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehh
Confidence            5 6778888888999999865332 222111101111   2256789998876643

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.68  E-value=1.5e-14  Score=109.58  Aligned_cols=231  Identities=13%  Similarity=0.142  Sum_probs=164.3

Q ss_pred             CCCcEEEEEEcCCCC--EEEEeecCCeEEEEEccCCeeeeee------eeeeeceEEEEEeccCCeEEEeccCCCCCceE
Q 023822           33 YNGRISSMDFHKSSS--YLVTASDDESIRLYDVTAATCLKTI------NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (276)
Q Consensus        33 h~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~  104 (276)
                      -...|..++|..+++  .|...+.|..+..+.+........+      .....+|..+...  +..|+++..   +|.+.
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~---sG~l~  128 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVS---SGNLQ  128 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEec---CCcEE
Confidence            356788888876543  4555556777877777665544433      2334556666553  345666666   99999


Q ss_pred             EEEccCCc----eeeeecccCcceEEEEeccCCC-EEEEeeCC--CeEEEEeccCceeeeeEee-----------cCCCe
Q 023822          105 LLSLHDNK----YLRYFKGHHDRVVSLSLCSSKD-CFISGSLD--RTVLLWDQRAEKCQGLLRV-----------QGRPA  166 (276)
Q Consensus       105 ~~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d--~~i~iwd~~~~~~~~~~~~-----------~~~~~  166 (276)
                      +|....+.    ++..+..+ ..+..|.-++... .+++|+..  ..+.+||+...+.+..-..           --+..
T Consensus       129 ~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td  207 (412)
T KOG3881|consen  129 VRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD  207 (412)
T ss_pred             EEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence            99987442    23334333 4456666666555 56668888  7899999998744332211           01235


Q ss_pred             eEecCC--CcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEE
Q 023822          167 AAYDDQ--GLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLST  243 (276)
Q Consensus       167 ~~~~~~--~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  243 (276)
                      +.|-+.  ...|++++ -+++++||.+.++. |+..  +.-...+++++...|.|+++++|..-|.+..||++.++.+..
T Consensus       208 i~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR-PV~~--fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~  284 (412)
T KOG3881|consen  208 IRFLEGSPNYKFATITRYHQVRLYDTRHQRR-PVAQ--FDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC  284 (412)
T ss_pred             ceecCCCCCceEEEEecceeEEEecCcccCc-ceeE--eccccCcceeeeecCCCcEEEEecccchhheecccCceeecc
Confidence            666665  55666666 79999999997654 3333  334466999999999999999999999999999999999887


Q ss_pred             -eecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          244 -YNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       244 -~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                       +.   +..+.|+++..+|.+++|+++|-|.+|
T Consensus       285 ~~k---g~tGsirsih~hp~~~~las~GLDRyv  314 (412)
T KOG3881|consen  285 GLK---GITGSIRSIHCHPTHPVLASCGLDRYV  314 (412)
T ss_pred             ccC---CccCCcceEEEcCCCceEEeeccceeE
Confidence             66   788999999999999999999999875

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=8.5e-14  Score=113.45  Aligned_cols=224  Identities=11%  Similarity=0.061  Sum_probs=139.9

Q ss_pred             eccCCCcEEEEEEcCCCCEE---EEeecCC--eEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCC--CCCc
Q 023822           30 FRDYNGRISSMDFHKSSSYL---VTASDDE--SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG--WDES  102 (276)
Q Consensus        30 ~~~h~~~v~~~~~~~~~~~l---~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~--~d~~  102 (276)
                      +......+.+-+|+|||+.+   ++...+|  .|.+.++.+++... +....+.....+|+|||+.|+......  .+..
T Consensus       180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~  258 (428)
T PRK01029        180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLF  258 (428)
T ss_pred             cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCccee
Confidence            44445667788999999752   2444443  57788887765433 333344456789999999998876421  1223


Q ss_pred             eEEEEccCC---ceeeeecccCcceEEEEeccCCCEEEEee-CCCeEEEE--eccC-ceeeeeE--eecCCCeeEecCCC
Q 023822          103 LRLLSLHDN---KYLRYFKGHHDRVVSLSLCSSKDCFISGS-LDRTVLLW--DQRA-EKCQGLL--RVQGRPAAAYDDQG  173 (276)
Q Consensus       103 i~~~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iw--d~~~-~~~~~~~--~~~~~~~~~~~~~~  173 (276)
                      +..|++..+   +..+............+|+|||+.|+..+ .+|...+|  ++.. +.....+  .........|+|+|
T Consensus       259 ~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG  338 (428)
T PRK01029        259 IQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG  338 (428)
T ss_pred             EEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCC
Confidence            444676653   33333333333456789999999777665 45654444  4432 2222223  22345678999999


Q ss_pred             cEEEEee--C--CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeec---CCcEEEEECCCCcEEEEeec
Q 023822          174 LVFAVAF--G--GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM---EGHIHVLDSFRGTLLSTYNV  246 (276)
Q Consensus       174 ~~l~~~~--d--~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~  246 (276)
                      +.++...  +  ..|.+||+.+++.     ..+......+....|+|||+.|+....   ...|.++|+.+++...... 
T Consensus       339 ~~Laf~~~~~g~~~I~v~dl~~g~~-----~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~-  412 (428)
T PRK01029        339 KKIAFCSVIKGVRQICVYDLATGRD-----YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI-  412 (428)
T ss_pred             CEEEEEEcCCCCcEEEEEECCCCCe-----EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-
Confidence            8887665  2  4799999987653     122222335677899999998876543   3568899988877654443 


Q ss_pred             CCCCCCceEEEEECCCC
Q 023822          247 KPVSRNSTLEASFSPEG  263 (276)
Q Consensus       247 ~~~~~~~v~~~~~s~~g  263 (276)
                         ..+.+...+|+|-.
T Consensus       413 ---~~g~~~~p~Ws~~~  426 (428)
T PRK01029        413 ---GSGEKRFPSWGAFP  426 (428)
T ss_pred             ---CCCcccCceecCCC
Confidence               34556778898854

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.67  E-value=1e-12  Score=104.62  Aligned_cols=233  Identities=14%  Similarity=0.119  Sum_probs=148.5

Q ss_pred             ccccceeeccCCCcEEEEEEcCCCCEEEEee-cCCeEEEEEccC-Ceeeeee--ee-----------eeeceEEEEEecc
Q 023822           23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTAS-DDESIRLYDVTA-ATCLKTI--NS-----------KKYGVDLVCFTSH   87 (276)
Q Consensus        23 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~-~~~~~~~--~~-----------~~~~v~~~~~~~~   87 (276)
                      .++.+............++++|++++|+++. .+|.|.++++.. +......  ..           ......++.++|+
T Consensus        75 ~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pd  154 (345)
T PF10282_consen   75 TLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPD  154 (345)
T ss_dssp             EEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TT
T ss_pred             eeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCC
Confidence            3444444442334456799999999998887 589999999986 4433221  11           1234689999999


Q ss_pred             CCeEEEeccCCCCCceEEEEccCCc--ee--eeec-ccCcceEEEEeccCCCEEEEe-eCCCeEEEEecc--Ccee--ee
Q 023822           88 PTTVIYSSKNGWDESLRLLSLHDNK--YL--RYFK-GHHDRVVSLSLCSSKDCFISG-SLDRTVLLWDQR--AEKC--QG  157 (276)
Q Consensus        88 ~~~l~~~~~~~~d~~i~~~d~~~~~--~~--~~~~-~~~~~i~~~~~~~~~~~l~~~-~~d~~i~iwd~~--~~~~--~~  157 (276)
                      ++++++...+  ...|.+|++....  ..  ..+. ........+.|+|++++++.. ..+++|.++++.  .+..  +.
T Consensus       155 g~~v~v~dlG--~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~  232 (345)
T PF10282_consen  155 GRFVYVPDLG--ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQ  232 (345)
T ss_dssp             SSEEEEEETT--TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred             CCEEEEEecC--CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEE
Confidence            9999988763  6789999997665  21  1221 234557899999999976555 457889999988  3322  22


Q ss_pred             eEee---c-----CCCeeEecCCCcEEEEee--CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEee-c
Q 023822          158 LLRV---Q-----GRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT-M  226 (276)
Q Consensus       158 ~~~~---~-----~~~~~~~~~~~~~l~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~  226 (276)
                      .+..   .     ....+.++|++++|.++.  .+.|.+|++.........+............++++|+|++|+++. .
T Consensus       233 ~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~  312 (345)
T PF10282_consen  233 TISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD  312 (345)
T ss_dssp             EEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETT
T ss_pred             EeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecC
Confidence            2211   0     233689999999988887  689999999532211112222222334578999999999999887 4


Q ss_pred             CCcEEEEEC--CCCcEEEEeecCCCCCCceEEEEE
Q 023822          227 EGHIHVLDS--FRGTLLSTYNVKPVSRNSTLEASF  259 (276)
Q Consensus       227 dg~i~i~d~--~~~~~~~~~~~~~~~~~~v~~~~~  259 (276)
                      ++.|.+|++  .+|.+...-...  .-....++.|
T Consensus       313 s~~v~vf~~d~~tG~l~~~~~~~--~~~~p~ci~f  345 (345)
T PF10282_consen  313 SNTVSVFDIDPDTGKLTPVGSSV--PIPSPVCIVF  345 (345)
T ss_dssp             TTEEEEEEEETTTTEEEEEEEEE--ESSSEEEEEE
T ss_pred             CCeEEEEEEeCCCCcEEEecccc--cCCCCEEEeC
Confidence            578999865  577665544311  2344556655

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.67  E-value=1.4e-14  Score=108.09  Aligned_cols=236  Identities=19%  Similarity=0.316  Sum_probs=158.9

Q ss_pred             CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCe-----eeeeeeee------------eeceEEEEEeccCC--eEEEe
Q 023822           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT-----CLKTINSK------------KYGVDLVCFTSHPT--TVIYS   94 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~------------~~~v~~~~~~~~~~--~l~~~   94 (276)
                      ..-|.++.|...|.+||+|..+|.|.++.-+...     ....++.|            ...|..+.|.++++  .++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            3568899999999999999999999999754322     22233333            23688899998764  45555


Q ss_pred             ccCCCCCceEEEEccCCcee-----------------------------------eee-cccCcceEEEEeccCCCEEEE
Q 023822           95 SKNGWDESLRLLSLHDNKYL-----------------------------------RYF-KGHHDRVVSLSLCSSKDCFIS  138 (276)
Q Consensus        95 ~~~~~d~~i~~~d~~~~~~~-----------------------------------~~~-~~~~~~i~~~~~~~~~~~l~~  138 (276)
                      +.   |.+|++|.+......                                   +.+ ..|+-.|+++.++.|...+++
T Consensus       105 tN---dktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS  181 (433)
T KOG1354|consen  105 TN---DKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS  181 (433)
T ss_pred             cC---CcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee
Confidence            55   999999987542110                                   001 257778999999999998888


Q ss_pred             eeCCCeEEEEeccCceeeeeE-ee---------cCCCeeEecCCC--cEEEEeeCCeEEEEecccCCCC--Ceeeee---
Q 023822          139 GSLDRTVLLWDQRAEKCQGLL-RV---------QGRPAAAYDDQG--LVFAVAFGGYIRMFDARKYEKG--PFDIFS---  201 (276)
Q Consensus       139 ~~~d~~i~iwd~~~~~~~~~~-~~---------~~~~~~~~~~~~--~~l~~~~d~~i~~~d~~~~~~~--~~~~~~---  201 (276)
                      +. |-+|.+|+++-...-..+ ..         .-+++..|+|..  .++.+++.|+|++-|+|....-  ...++.   
T Consensus       182 AD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe  260 (433)
T KOG1354|consen  182 AD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE  260 (433)
T ss_pred             cc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence            75 778999998744322222 11         124577889864  3444455899999999953210  000111   


Q ss_pred             -------ecCCCCCceEEEECCCCcEEEEeecCCcEEEEEC-CCCcEEEEeecCCCC---------CCc---eEEEEECC
Q 023822          202 -------VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDS-FRGTLLSTYNVKPVS---------RNS---TLEASFSP  261 (276)
Q Consensus       202 -------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~~---------~~~---v~~~~~s~  261 (276)
                             +..-...|..+.|+++|+|+++-+. -+|++||+ ...+++.++..+...         ...   -..++|+.
T Consensus       261 dp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg  339 (433)
T KOG1354|consen  261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG  339 (433)
T ss_pred             CCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence                   1122346788999999999987644 47999998 566677776633211         111   24578999


Q ss_pred             CCcEEEEecCCCC
Q 023822          262 EGMFVISGRVSPF  274 (276)
Q Consensus       262 ~g~~l~~~~~dg~  274 (276)
                      ++.++++|+.+.+
T Consensus       340 ~~~~v~TGsy~n~  352 (433)
T KOG1354|consen  340 NDSYVMTGSYNNV  352 (433)
T ss_pred             CcceEecccccce
Confidence            9999999997654

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=1.3e-13  Score=113.23  Aligned_cols=205  Identities=12%  Similarity=0.096  Sum_probs=131.2

Q ss_pred             eEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEE
Q 023822           57 SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF  136 (276)
Q Consensus        57 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  136 (276)
                      .+.++|..... .+.+......+....|+|+++.++..........|++||+.+++... +...........|+|||+.|
T Consensus       199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L  276 (448)
T PRK04792        199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL  276 (448)
T ss_pred             EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence            67777865443 34455556678899999999999887653223468999998876532 22223334578999999977


Q ss_pred             EE-eeCCCe--EEEEeccCceeeeeEe-ecCCCeeEecCCCcEEEEee--C--CeEEEEecccCCCCCeeeeeecCCCCC
Q 023822          137 IS-GSLDRT--VLLWDQRAEKCQGLLR-VQGRPAAAYDDQGLVFAVAF--G--GYIRMFDARKYEKGPFDIFSVGGDISD  208 (276)
Q Consensus       137 ~~-~~~d~~--i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~--d--~~i~~~d~~~~~~~~~~~~~~~~~~~~  208 (276)
                      +. .+.++.  |+++|+.+++...... ........|+|+++.++...  +  ..|+++|+.+++.   .......  ..
T Consensus       277 a~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~---~~Lt~~g--~~  351 (448)
T PRK04792        277 ALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV---SRLTFEG--EQ  351 (448)
T ss_pred             EEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE---EEEecCC--CC
Confidence            64 455664  8888888776544332 22345689999998777665  3  3566677765442   1112222  22


Q ss_pred             ceEEEECCCCcEEEEeecC-C--cEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCC
Q 023822          209 ANVVKFSNDGRLMLLTTME-G--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       209 i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  273 (276)
                      ....+|+|+|++|+..+.+ +  .|.++|+.+++... +..   . .......|+|||++|+..+.++
T Consensus       352 ~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~---~-~~d~~ps~spdG~~I~~~~~~~  414 (448)
T PRK04792        352 NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTS---T-RLDESPSVAPNGTMVIYSTTYQ  414 (448)
T ss_pred             CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccC---C-CCCCCceECCCCCEEEEEEecC
Confidence            3457899999998876653 3  46667887776533 321   1 1122457999999887766543

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=2e-15  Score=119.08  Aligned_cols=165  Identities=15%  Similarity=0.189  Sum_probs=126.4

Q ss_pred             eeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeee-cccCcceEEEEeccC--CCEEEEeeCCCe
Q 023822           68 CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF-KGHHDRVVSLSLCSS--KDCFISGSLDRT  144 (276)
Q Consensus        68 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~i~~~~~~~~--~~~l~~~~~d~~  144 (276)
                      ..+++.+|.+.|.++.|+.+|..|++|+.   |-.+.|||.-..+.+..+ .+|...|.++.|-|.  .+++++|..|..
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSD---D~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~  118 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSD---DTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKL  118 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCC---cceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcce
Confidence            34678899999999999999999999998   999999999887777766 589999999999984  558999999999


Q ss_pred             EEEEeccCce----------eeeeE--eecCCCeeEecCCC-cE-EEEeeCCeEEEEecccCCCCC------eeeeeecC
Q 023822          145 VLLWDQRAEK----------CQGLL--RVQGRPAAAYDDQG-LV-FAVAFGGYIRMFDARKYEKGP------FDIFSVGG  204 (276)
Q Consensus       145 i~iwd~~~~~----------~~~~~--~~~~~~~~~~~~~~-~~-l~~~~d~~i~~~d~~~~~~~~------~~~~~~~~  204 (276)
                      |+++|+...+          ....+  +...+..++..|++ .. ..++.||+|+-||++....-+      ........
T Consensus       119 i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~  198 (758)
T KOG1310|consen  119 IKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP  198 (758)
T ss_pred             EEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhch
Confidence            9999998522          11122  55566778888887 44 444559999999999743211      11111112


Q ss_pred             CCCCceEEEECCCC-cEEEEeecCCcEEEEEC
Q 023822          205 DISDANVVKFSNDG-RLMLLTTMEGHIHVLDS  235 (276)
Q Consensus       205 ~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~  235 (276)
                      ..-...++.++|.. .+|++|+.|-..++||.
T Consensus       199 ~lielk~ltisp~rp~~laVGgsdpfarLYD~  230 (758)
T KOG1310|consen  199 QLIELKCLTISPSRPYYLAVGGSDPFARLYDR  230 (758)
T ss_pred             hhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence            22356789999964 67899999999999994

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.65  E-value=3.5e-12  Score=99.61  Aligned_cols=226  Identities=11%  Similarity=0.106  Sum_probs=147.0

Q ss_pred             EcCCCCEEEEeec----------CCeEEEEEccCCeeeeeeeeeee-------ceEEEEEeccCCeEEEeccCCCCCceE
Q 023822           42 FHKSSSYLVTASD----------DESIRLYDVTAATCLKTINSKKY-------GVDLVCFTSHPTTVIYSSKNGWDESLR  104 (276)
Q Consensus        42 ~~~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~~~~~d~~i~  104 (276)
                      ++||++.|+++..          +..|.+||..+.+.+.++.....       ....++++|+++++++..... +..|.
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p-~~~V~  131 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSP-SPAVG  131 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCC-CCEEE
Confidence            9999998877655          78999999999999988875322       234789999999999887522 78999


Q ss_pred             EEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceee--e---eEeecCC---CeeEecC-CCcE
Q 023822          105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ--G---LLRVQGR---PAAAYDD-QGLV  175 (276)
Q Consensus       105 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~---~~~~~~~---~~~~~~~-~~~~  175 (276)
                      +.|+.+++.+..+.- .+...-...+++..+  .-+.||......+......  .   .++....   ..-.+.+ ++++
T Consensus       132 VvD~~~~kvv~ei~v-p~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~  208 (352)
T TIGR02658       132 VVDLEGKAFVRMMDV-PDCYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRL  208 (352)
T ss_pred             EEECCCCcEEEEEeC-CCCcEEEEecCCccE--EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcE
Confidence            999999999887764 222222222222221  2234554444333221111  1   1111000   0013344 8888


Q ss_pred             EEEeeCCeEEEEecccCCCCCe---eeeeec-----CCCCCceEEEECCCCcEEEEee----------cCCcEEEEECCC
Q 023822          176 FAVAFGGYIRMFDARKYEKGPF---DIFSVG-----GDISDANVVKFSNDGRLMLLTT----------MEGHIHVLDSFR  237 (276)
Q Consensus       176 l~~~~d~~i~~~d~~~~~~~~~---~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~  237 (276)
                      +..+.+|.|.+.|+........   ......     -....+.-++++|+++.+++..          ..+.|.++|..+
T Consensus       209 ~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t  288 (352)
T TIGR02658       209 VWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT  288 (352)
T ss_pred             EEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC
Confidence            8888889999999755332211   111111     1223344599999998888743          225799999999


Q ss_pred             CcEEEEeecCCCCCCceEEEEECCCCc-EEEEec-CCCCC
Q 023822          238 GTLLSTYNVKPVSRNSTLEASFSPEGM-FVISGR-VSPFS  275 (276)
Q Consensus       238 ~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~-~dg~v  275 (276)
                      ++.+..+.    ....+..++++|||+ +|++.. .++.|
T Consensus       289 ~kvi~~i~----vG~~~~~iavS~Dgkp~lyvtn~~s~~V  324 (352)
T TIGR02658       289 GKRLRKIE----LGHEIDSINVSQDAKPLLYALSTGDKTL  324 (352)
T ss_pred             CeEEEEEe----CCCceeeEEECCCCCeEEEEeCCCCCcE
Confidence            99999998    456899999999999 777665 45544

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=7.9e-13  Score=107.83  Aligned_cols=207  Identities=11%  Similarity=0.061  Sum_probs=127.6

Q ss_pred             CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEE--EeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCC
Q 023822           56 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVI--YSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK  133 (276)
Q Consensus        56 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~  133 (276)
                      ..|.+.|.+.+.. +.+.........-.|+||++.++  ..+..+....|.+.++.+++..+ +....+.....+|+|||
T Consensus       165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG  242 (428)
T PRK01029        165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRK  242 (428)
T ss_pred             ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCC
Confidence            3677777754443 34444455667889999998632  23332224578888998776433 33344455678999999


Q ss_pred             CEEEEeeC-CC----eEEEEeccCc---eeeeeEee--cCCCeeEecCCCcEEEEee--CCeEEEE--ecccCCCCCeee
Q 023822          134 DCFISGSL-DR----TVLLWDQRAE---KCQGLLRV--QGRPAAAYDDQGLVFAVAF--GGYIRMF--DARKYEKGPFDI  199 (276)
Q Consensus       134 ~~l~~~~~-d~----~i~iwd~~~~---~~~~~~~~--~~~~~~~~~~~~~~l~~~~--d~~i~~~--d~~~~~~~~~~~  199 (276)
                      +.|+..+. +|    .+..|++..+   +.......  .......|+|+|+.|+..+  ++...+|  ++......   .
T Consensus       243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~---~  319 (428)
T PRK01029        243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQS---P  319 (428)
T ss_pred             CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccc---e
Confidence            98876553 22    3444776652   22222222  2235689999998776655  4544455  44321111   1


Q ss_pred             eeecCCCCCceEEEECCCCcEEEEeecC---CcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecC
Q 023822          200 FSVGGDISDANVVKFSNDGRLMLLTTME---GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRV  271 (276)
Q Consensus       200 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  271 (276)
                      ..+......+....|+|||+.|+..+.+   ..|.+||+.+++......    ....+....|+|||++|+..+.
T Consensus       320 ~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~----~~~~~~~p~wSpDG~~L~f~~~  390 (428)
T PRK01029        320 RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT----SPENKESPSWAIDSLHLVYSAG  390 (428)
T ss_pred             EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC----CCCCccceEECCCCCEEEEEEC
Confidence            2222333456788999999988876543   369999998887654332    2345677899999998875443

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.61  E-value=3.9e-16  Score=128.47  Aligned_cols=198  Identities=16%  Similarity=0.240  Sum_probs=148.8

Q ss_pred             eeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEE
Q 023822           68 CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLL  147 (276)
Q Consensus        68 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i  147 (276)
                      .+..+.+|...|.|+.|...+.++++++.   |..++||..+++.++....+|.+.|+.++.+.+..++++++.|..|++
T Consensus       182 ~ikrLlgH~naVyca~fDrtg~~Iitgsd---d~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrv  258 (1113)
T KOG0644|consen  182 NIKRLLGHRNAVYCAIFDRTGRYIITGSD---DRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRV  258 (1113)
T ss_pred             HHHHHHhhhhheeeeeeccccceEeecCc---cceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEE
Confidence            34456688899999999999999999998   999999999999999999999999999999998889999999999999


Q ss_pred             EeccCceeeeeE--eecCCCeeEecCCCcEEEEeeCCeEEEEecccC-CC-C--Ce--------eee-------------
Q 023822          148 WDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKY-EK-G--PF--------DIF-------------  200 (276)
Q Consensus       148 wd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~-~~-~--~~--------~~~-------------  200 (276)
                      |.+..+.++..+  +.+.++.++|+|-.   +++.||++++||.+-. .. .  +.        ...             
T Consensus       259 Wrl~~~~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs  335 (1113)
T KOG0644|consen  259 WRLPDGAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS  335 (1113)
T ss_pred             EecCCCchHHHHhccccceeeeccCccc---cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccccc
Confidence            999999999888  66679999999976   4444899999998821 10 0  00        000             


Q ss_pred             -eecCCCCCceEEEECCCCcEEEEee-----------cCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCC-cEEE
Q 023822          201 -SVGGDISDANVVKFSNDGRLMLLTT-----------MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG-MFVI  267 (276)
Q Consensus       201 -~~~~~~~~i~~~~~~~~~~~l~~~~-----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~  267 (276)
                       ........+..++|..++-.+++.+           .+-.+.+|++.+|.+.+...   +|...+..+.++|-+ +...
T Consensus       336 ~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~---ghsd~~yvLd~Hpfn~ri~m  412 (1113)
T KOG0644|consen  336 RDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM---GHSDEVYVLDVHPFNPRIAM  412 (1113)
T ss_pred             CCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhc---ccccceeeeeecCCCcHhhh
Confidence             0000111222333433333333333           34567889999999888888   788899999999855 3445


Q ss_pred             EecCCCC
Q 023822          268 SGRVSPF  274 (276)
Q Consensus       268 ~~~~dg~  274 (276)
                      +++.||-
T Consensus       413 sag~dgs  419 (1113)
T KOG0644|consen  413 SAGYDGS  419 (1113)
T ss_pred             hccCCCc
Confidence            6666664

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.60  E-value=1.1e-14  Score=128.70  Aligned_cols=224  Identities=16%  Similarity=0.198  Sum_probs=171.2

Q ss_pred             eccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeee-eeeceEEEEEeccCCeEEEeccCCCCCceEEEEc
Q 023822           30 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL  108 (276)
Q Consensus        30 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~  108 (276)
                      ++.|-..|.++.=+|...+-+||+.||.+++|....++.+..++. .+..|+.+.|+.+|+.+.++..   ||.+.+|.+
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~---dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDG---DGDLSLWQA 2280 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeecc---CCceeeccc
Confidence            445567788888889888999999999999999988887776652 3478999999999999988887   999999998


Q ss_pred             cCCceeeeecccCcceEEEEeccCCCEEEEeeC---CCeEEEEeccCc---eeeeeEeecCCCeeEecCCCcEEEEee-C
Q 023822          109 HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL---DRTVLLWDQRAE---KCQGLLRVQGRPAAAYDDQGLVFAVAF-G  181 (276)
Q Consensus       109 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~-d  181 (276)
                      . .++....+.|.....++.|-.  ..+++++.   ++.+.+||..-.   ..+.+-|.++..++++-|...++.+|+ +
T Consensus      2281 ~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2281 S-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred             C-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCc
Confidence            7 677778888999988888865  55666654   678999997643   344444888899999999998888888 8


Q ss_pred             CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCce----EEE
Q 023822          182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNST----LEA  257 (276)
Q Consensus       182 ~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v----~~~  257 (276)
                      |.|++||++..+.    +..++.         +. ...++++|+..|.++||++..-..++.+.....+.+-.    ..+
T Consensus      2358 G~v~l~D~rqrql----~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~ 2423 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQL----RHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQI 2423 (2439)
T ss_pred             CcEEEeehHHHHH----HHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCcee
Confidence            9999999997553    222211         44 55789999999999999999888887776432222211    112


Q ss_pred             EECCCCcEEEEecCCCC
Q 023822          258 SFSPEGMFVISGRVSPF  274 (276)
Q Consensus       258 ~~s~~g~~l~~~~~dg~  274 (276)
                      .. -.+..|.+++.||+
T Consensus      2424 ~v-~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2424 NV-GQCNRIFSCGADGT 2439 (2439)
T ss_pred             ee-ccCceEEEecCCCC
Confidence            22 23457888888875

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=5.5e-14  Score=114.59  Aligned_cols=233  Identities=12%  Similarity=0.132  Sum_probs=173.5

Q ss_pred             CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCe---------------eeeeeeeeeeceEEEEEeccCCeEEEeccCC
Q 023822           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT---------------CLKTINSKKYGVDLVCFTSHPTTVIYSSKNG   98 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~   98 (276)
                      .....|++|+.+..++|+|+.||.+++..+.+..               .-+++.+|+..|..+.|+.+.+.+-++..  
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt--   91 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT--   91 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC--
Confidence            3567899999999999999999999999876421               22456889999999999999999988888  


Q ss_pred             CCCceEEEEccCCceeeee--cccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeee-eEeecCCCeeEecCCCcE
Q 023822           99 WDESLRLLSLHDNKYLRYF--KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG-LLRVQGRPAAAYDDQGLV  175 (276)
Q Consensus        99 ~d~~i~~~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~  175 (276)
                       +|.|.+|-+-.+.-...+  ....+.|.+|+|+.+|..++....||.|.+=.++..+.-. .+.......+.|++|.+.
T Consensus        92 -~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~  170 (1189)
T KOG2041|consen   92 -SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQ  170 (1189)
T ss_pred             -CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHH
Confidence             999999999887644433  2345678999999999999999999999887776654332 234444557899999987


Q ss_pred             EEEee-CCeEEEEecccCCCCCeee---e----eecCCCCCceEEEEC--------CCCcEEEEeecCCcEEEEECCCCc
Q 023822          176 FAVAF-GGYIRMFDARKYEKGPFDI---F----SVGGDISDANVVKFS--------NDGRLMLLTTMEGHIHVLDSFRGT  239 (276)
Q Consensus       176 l~~~~-d~~i~~~d~~~~~~~~~~~---~----~~~~~~~~i~~~~~~--------~~~~~l~~~~~dg~i~i~d~~~~~  239 (276)
                      +..+. +|.+.+||.+..-......   .    .+...+..+..+.|.        |+...|+++-..|.+.|-.-.+..
T Consensus       171 ~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~  250 (1189)
T KOG2041|consen  171 ALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDP  250 (1189)
T ss_pred             HHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCC
Confidence            77666 8999999986532111100   0    011112234555553        477889999999999998766655


Q ss_pred             EEEEeecCCCCCCceEEEEECCCCcEEEEecCCC
Q 023822          240 LLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       240 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  273 (276)
                      ....+.    ..-.+..+.|+|+|..||.++.+.
T Consensus       251 ~Pvv~d----tgm~~vgakWnh~G~vLAvcG~~~  280 (1189)
T KOG2041|consen  251 EPVVVD----TGMKIVGAKWNHNGAVLAVCGNDS  280 (1189)
T ss_pred             CCeEEe----cccEeecceecCCCcEEEEccCcc
Confidence            555555    346788999999999999998764

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.59  E-value=5e-11  Score=90.64  Aligned_cols=220  Identities=15%  Similarity=0.128  Sum_probs=146.8

Q ss_pred             EEEEcC-CCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeee
Q 023822           39 SMDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF  117 (276)
Q Consensus        39 ~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~  117 (276)
                      ++.|.+ ++.++++--..+.|..|+..+++... +....  ...+.+...+..++++.    .+.+.++|+.+++.....
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~~----~~~~~~~d~~~g~~~~~~   76 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVAD----SGGIAVVDPDTGKVTVLA   76 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEEE----TTCEEEEETTTTEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEEE----cCceEEEecCCCcEEEEe
Confidence            578888 66677776678999999998776533 22222  66777773335555555    455666698888654433


Q ss_pred             cc-----cCcceEEEEeccCCCEEEEeeCC--------CeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee--C
Q 023822          118 KG-----HHDRVVSLSLCSSKDCFISGSLD--------RTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF--G  181 (276)
Q Consensus       118 ~~-----~~~~i~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~--d  181 (276)
                      ..     .....+.+++.|+|++.++....        |.|..++.. ++..... .....+.++|+|+++.|..+.  .
T Consensus        77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~  155 (246)
T PF08450_consen   77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFN  155 (246)
T ss_dssp             EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTT
T ss_pred             eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeeccccc
Confidence            32     34568899999999977776543        567777777 4443333 445566899999998766554  7


Q ss_pred             CeEEEEecccCCCCCe--e-eeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEE
Q 023822          182 GYIRMFDARKYEKGPF--D-IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS  258 (276)
Q Consensus       182 ~~i~~~d~~~~~~~~~--~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~  258 (276)
                      +.|..|++........  . ...........-.+++..+|++.++....+.|.+++.. |+.+..+..   ....+++++
T Consensus       156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~---p~~~~t~~~  231 (246)
T PF08450_consen  156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIEL---PVPRPTNCA  231 (246)
T ss_dssp             TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE----SSSSEEEEE
T ss_pred             ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcC---CCCCEEEEE
Confidence            8999999875332111  1 12222222347789999999988877788999999966 999988884   345899999


Q ss_pred             E-CCCCcEEEEec
Q 023822          259 F-SPEGMFVISGR  270 (276)
Q Consensus       259 ~-s~~g~~l~~~~  270 (276)
                      | -++.+.|+..+
T Consensus       232 fgg~~~~~L~vTt  244 (246)
T PF08450_consen  232 FGGPDGKTLYVTT  244 (246)
T ss_dssp             EESTTSSEEEEEE
T ss_pred             EECCCCCEEEEEe
Confidence            9 46766665543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.59  E-value=3.3e-12  Score=101.75  Aligned_cols=192  Identities=15%  Similarity=0.153  Sum_probs=134.8

Q ss_pred             CEE-EEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceE
Q 023822           47 SYL-VTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV  125 (276)
Q Consensus        47 ~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~  125 (276)
                      +++ ++-..++.|.+.|..+.+.+..+......-..+.++||++++++++.   |+.|.++|+.+++.+.+++... ...
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r---dg~vsviD~~~~~~v~~i~~G~-~~~   81 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR---DGTVSVIDLATGKVVATIKVGG-NPR   81 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET---TSEEEEEETTSSSEEEEEE-SS-EEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC---CCeEEEEECCcccEEEEEecCC-Ccc
Confidence            444 45567899999999999999998865444455789999999999987   9999999999999999887544 457


Q ss_pred             EEEeccCCCEEEEee-CCCeEEEEeccCceeeeeEeec---------CCCeeEecCCCcEEEEee-C-CeEEEEecccCC
Q 023822          126 SLSLCSSKDCFISGS-LDRTVLLWDQRAEKCQGLLRVQ---------GRPAAAYDDQGLVFAVAF-G-GYIRMFDARKYE  193 (276)
Q Consensus       126 ~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~-d-~~i~~~d~~~~~  193 (276)
                      .+++++||++++++. .++.+.++|.++.+.++.+...         .+..+..+|....++..- | +.|.+.|....+
T Consensus        82 ~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~  161 (369)
T PF02239_consen   82 GIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK  161 (369)
T ss_dssp             EEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS
T ss_pred             eEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc
Confidence            899999999888765 5899999999999998887322         223556677777555554 4 888888887753


Q ss_pred             CCCeeeeeecCCCCCceEEEECCCCcEEEEe-ecCCcEEEEECCCCcEEEEee
Q 023822          194 KGPFDIFSVGGDISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTLLSTYN  245 (276)
Q Consensus       194 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~  245 (276)
                      .  ...... ..........|+|+++|++++ ..++.|-++|.++++....+.
T Consensus       162 ~--~~~~~i-~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~  211 (369)
T PF02239_consen  162 N--LKVTTI-KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALID  211 (369)
T ss_dssp             C--EEEEEE-E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             c--cceeee-cccccccccccCcccceeeecccccceeEEEeeccceEEEEee
Confidence            2  222222 233456789999999987665 456789999999988876654

...

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.57  E-value=5.6e-13  Score=106.14  Aligned_cols=186  Identities=14%  Similarity=0.181  Sum_probs=146.6

Q ss_pred             CCCCEEEEeecCCeEEEEEccCCeeeeeeeee---eeceEEEEEe--------------------ccCCeEEEeccCCCC
Q 023822           44 KSSSYLVTASDDESIRLYDVTAATCLKTINSK---KYGVDLVCFT--------------------SHPTTVIYSSKNGWD  100 (276)
Q Consensus        44 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~v~~~~~~--------------------~~~~~l~~~~~~~~d  100 (276)
                      |...++|....||.+++|+..+++..+.+...   .+...+..|.                    .+...++-|..   .
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~---~   79 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTP---Q   79 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecC---C
Confidence            45678999999999999999998877776432   2334444442                    22334555555   8


Q ss_pred             CceEEEEccCCceeeeec--ccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe--ecCCCeeEecCCCcEE
Q 023822          101 ESLRLLSLHDNKYLRYFK--GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR--VQGRPAAAYDDQGLVF  176 (276)
Q Consensus       101 ~~i~~~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~l  176 (276)
                      |.|.+|+...++....+.  .|.+.|.++.++.+-..|.+++.|+.+..|+....+.+....  ...+..++++||+.++
T Consensus        80 g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l  159 (541)
T KOG4547|consen   80 GSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL  159 (541)
T ss_pred             ccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence            999999999999887775  699999999999988899999999999999999998888873  3446689999999888


Q ss_pred             EEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCC-----CcEEEEe-ecCCcEEEEECCC
Q 023822          177 AVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-----GRLMLLT-TMEGHIHVLDSFR  237 (276)
Q Consensus       177 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~-~~dg~i~i~d~~~  237 (276)
                      ++++ ++|++||+++.+.    +..+.+|.++|++++|--+     |.+++++ ..+..+.+|-...
T Consensus       160 ~~as-~~ik~~~~~~kev----v~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  160 LTAS-RQIKVLDIETKEV----VITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             Eecc-ceEEEEEccCceE----EEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            7764 8999999998775    7788999999999999877     6776664 3455577776543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.56  E-value=2.3e-11  Score=91.97  Aligned_cols=214  Identities=13%  Similarity=0.166  Sum_probs=147.6

Q ss_pred             CCeEEEEEccCCe--e-eeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccC--Cceee--eecccCcceEEE
Q 023822           55 DESIRLYDVTAAT--C-LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD--NKYLR--YFKGHHDRVVSL  127 (276)
Q Consensus        55 d~~i~iwd~~~~~--~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~--~~~~~--~~~~~~~~i~~~  127 (276)
                      +.-|++|++.+.+  . ...+-.....++-++|+|+.++|.++...+.+|.|..|.++.  |+...  .......+.+.+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            4569999987322  1 112223455788999999999999998865678888888775  43221  111122334789


Q ss_pred             EeccCCCEEEEeeC-CCeEEEEeccC-ceeee---eE-eecC----------CCeeEecCCCcEEEEee--CCeEEEEec
Q 023822          128 SLCSSKDCFISGSL-DRTVLLWDQRA-EKCQG---LL-RVQG----------RPAAAYDDQGLVFAVAF--GGYIRMFDA  189 (276)
Q Consensus       128 ~~~~~~~~l~~~~~-d~~i~iwd~~~-~~~~~---~~-~~~~----------~~~~~~~~~~~~l~~~~--d~~i~~~d~  189 (276)
                      ++++++++++++.. -|.|.++-++. +....   .+ +...          .....+.|+++++++..  ...|.+|++
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~  174 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL  174 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence            99999999888876 47899999875 32222   11 2222          44678999999998887  588999999


Q ss_pred             ccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEee-cCCcEEEEECCCC-cEEEEeecC---C---CCCCceEEEEECC
Q 023822          190 RKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRG-TLLSTYNVK---P---VSRNSTLEASFSP  261 (276)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~-~~~~~~~~~---~---~~~~~v~~~~~s~  261 (276)
                      ..+...+.....+ ........|+|+|++++.+... -+++|.+|..... ..+..++..   +   .......++..+|
T Consensus       175 ~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~  253 (346)
T COG2706         175 DDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP  253 (346)
T ss_pred             ccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC
Confidence            9777655555554 3455788999999999987766 4889999998763 222322211   1   1234567788999


Q ss_pred             CCcEEEEe
Q 023822          262 EGMFVISG  269 (276)
Q Consensus       262 ~g~~l~~~  269 (276)
                      ||++|+++
T Consensus       254 dGrFLYas  261 (346)
T COG2706         254 DGRFLYAS  261 (346)
T ss_pred             CCCEEEEe
Confidence            99999875

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.55  E-value=7.3e-13  Score=113.74  Aligned_cols=202  Identities=12%  Similarity=0.119  Sum_probs=146.2

Q ss_pred             EEccCCeeeeeeeeeeeceEEEEEeccC-CeEEEeccCCCCCceEEEEccCC-------ceeeeecccCcceEEEEeccC
Q 023822           61 YDVTAATCLKTINSKKYGVDLVCFTSHP-TTVIYSSKNGWDESLRLLSLHDN-------KYLRYFKGHHDRVVSLSLCSS  132 (276)
Q Consensus        61 wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~d~~i~~~d~~~~-------~~~~~~~~~~~~i~~~~~~~~  132 (276)
                      |+. .|..++.+..|...+..++.++.. .++++++.   ||+|++|+.+.-       +...++......+.++.+.+.
T Consensus      1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~---DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~ 1109 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSD---DGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGN 1109 (1431)
T ss_pred             CCc-cceEeehhhhccccccceeecCCCCceEEEecC---CceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccC
Confidence            654 578888898999889898888766 89999998   999999997642       222344445678899999999


Q ss_pred             CCEEEEeeCCCeEEEEeccCceeeeeE---------eecCCCeeEe---c--CCCcEEEEee-CCeEEEEecccCCCCCe
Q 023822          133 KDCFISGSLDRTVLLWDQRAEKCQGLL---------RVQGRPAAAY---D--DQGLVFAVAF-GGYIRMFDARKYEKGPF  197 (276)
Q Consensus       133 ~~~l~~~~~d~~i~iwd~~~~~~~~~~---------~~~~~~~~~~---~--~~~~~l~~~~-d~~i~~~d~~~~~~~~~  197 (276)
                      ++.+|.++.||.|++.+++.....+..         +..+ ..+.+   .  .....++.+. -+.|..||++.....  
T Consensus      1110 ~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g-~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~-- 1186 (1431)
T KOG1240|consen 1110 GDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDG-VVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA-- 1186 (1431)
T ss_pred             CCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCC-ceEEeecccccccceeEEEEEeccceEEecchhhhhH--
Confidence            999999999999999998863211111         1111 11222   1  1223555555 699999999985532  


Q ss_pred             eeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCC---cEEEEecC
Q 023822          198 DIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG---MFVISGRV  271 (276)
Q Consensus       198 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g---~~l~~~~~  271 (276)
                      .........+.|++++.+|.+.+++.|+..|.+.+||++-+.++.....  ++..++..+..+|-.   ...++++.
T Consensus      1187 w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~--P~~~~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1187 WRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEH--PARAPIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred             HhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccC--cccCCcceEEeeccCCCCceEEEecc
Confidence            1223334557899999999999999999999999999999999888864  355788888777643   45555554

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=2.1e-11  Score=99.02  Aligned_cols=200  Identities=6%  Similarity=-0.021  Sum_probs=130.4

Q ss_pred             cEEEEEEcCCCCE-EEEeec---CCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCC
Q 023822           36 RISSMDFHKSSSY-LVTASD---DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN  111 (276)
Q Consensus        36 ~v~~~~~~~~~~~-l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~  111 (276)
                      .+....|+|||+. ++..+.   +..|.++|+.+++...... ..+......|+||++.++.......+..|.++|+.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            6778999999984 654433   3579999998876544433 4445667789999998877654333678999998877


Q ss_pred             ceeeeecccCcceEEEEeccCCCEEEEeeC-CC--eEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEee-C------
Q 023822          112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF-G------  181 (276)
Q Consensus       112 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-d------  181 (276)
                      +.. .+..+........|+|||+.|+..+. .+  .|.++|+.+++..+...... ....|+|+|+.++... .      
T Consensus       268 ~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~-~~~~~SPDG~~Ia~~~~~~~~~~~  345 (419)
T PRK04043        268 TLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK-NNSSVSTYKNYIVYSSRETNNEFG  345 (419)
T ss_pred             cEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC-cCceECCCCCEEEEEEcCCCcccC
Confidence            643 34434433445689999997776653 23  68888888777644432222 2358999998877665 2      


Q ss_pred             ---CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCC---cEEEEECCCCcEEEEee
Q 023822          182 ---GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG---HIHVLDSFRGTLLSTYN  245 (276)
Q Consensus       182 ---~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~  245 (276)
                         ..|.+.|+.++..     ..+... .......|+|||+.++..+.++   .+.+.++. |.....+.
T Consensus       346 ~~~~~I~v~d~~~g~~-----~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~-g~~~~~l~  408 (419)
T PRK04043        346 KNTFNLYLISTNSDYI-----RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN-YNKSFLFP  408 (419)
T ss_pred             CCCcEEEEEECCCCCe-----EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC-CCeeEEee
Confidence               2688888876542     112111 1233588999999887765432   36677764 44444443

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.54  E-value=1.7e-13  Score=115.54  Aligned_cols=189  Identities=12%  Similarity=0.093  Sum_probs=146.7

Q ss_pred             EEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeee----ceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceee
Q 023822           40 MDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKY----GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR  115 (276)
Q Consensus        40 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~  115 (276)
                      ..+..+...++..+.++.+.+||...+.....+.....    ...-+-++++.-++++++.   -+.|.+|+....+...
T Consensus        93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv---~~~iivW~~~~dn~p~  169 (967)
T KOG0974|consen   93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSV---FGEIIVWKPHEDNKPI  169 (967)
T ss_pred             cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccc---cccEEEEeccccCCcc
Confidence            44445667888888899999999987776666544332    2333445566678888887   8999999987544444


Q ss_pred             eecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE---eecCCCeeEecCCCcEEEEeeCCeEEEEecccC
Q 023822          116 YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL---RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKY  192 (276)
Q Consensus       116 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~  192 (276)
                      .+.+|.+.|.++.++.+|+++++.+.|.++++|++++.+.....   |...+..+.+.|. ++++++.|.+.++|+....
T Consensus       170 ~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-~i~t~gedctcrvW~~~~~  248 (967)
T KOG0974|consen  170 RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-RIITVGEDCTCRVWGVNGT  248 (967)
T ss_pred             eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-eeEEeccceEEEEEecccc
Confidence            68899999999999999999999999999999999998876622   5666778899998 6777777999999976543


Q ss_pred             CCCCeeeeeecCC-CCCceEEEECCCCcEEEEeecCCcEEEEECCC
Q 023822          193 EKGPFDIFSVGGD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR  237 (276)
Q Consensus       193 ~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  237 (276)
                      ..     .....| ...+..++..++...+++++.|+.+++|++..
T Consensus       249 ~l-----~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  249 QL-----EVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             ee-----hhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            32     133333 34688999999999999999999999999754

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=3e-13  Score=107.45  Aligned_cols=192  Identities=14%  Similarity=0.160  Sum_probs=148.4

Q ss_pred             EEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeec
Q 023822           39 SMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFK  118 (276)
Q Consensus        39 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~  118 (276)
                      .++++.-.--|+.++....|+-++++.|+.+..+....+.++++..++-...|++|+.   +|.|..||.++...+..+.
T Consensus       138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~---~g~VEfwDpR~ksrv~~l~  214 (703)
T KOG2321|consen  138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTE---DGVVEFWDPRDKSRVGTLD  214 (703)
T ss_pred             cccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEeccc---CceEEEecchhhhhheeee
Confidence            3455442233444445567999999999999999888889999999999999999998   9999999998876555443


Q ss_pred             ------ccCc-----ceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE-eecC--CCeeEecCC--CcEEEEeeCC
Q 023822          119 ------GHHD-----RVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-RVQG--RPAAAYDDQ--GLVFAVAFGG  182 (276)
Q Consensus       119 ------~~~~-----~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~--~~~~~~~~~--~~~l~~~~d~  182 (276)
                            .|.+     .|+++.|+.+|-.+++|+.+|.+.|||++..+++... |...  +..+.|.+.  +..+++....
T Consensus       215 ~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~  294 (703)
T KOG2321|consen  215 AASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKR  294 (703)
T ss_pred             cccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchH
Confidence                  2333     4999999999999999999999999999999887766 4333  446666554  4566666679


Q ss_pred             eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCC
Q 023822          183 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG  238 (276)
Q Consensus       183 ~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  238 (276)
                      .+++||-.+++.    .... .....++.+++-|++-+++++-.+..+..|=+...
T Consensus       295 ~~kiWd~~~Gk~----~asi-Ept~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L  345 (703)
T KOG2321|consen  295 ILKIWDECTGKP----MASI-EPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSL  345 (703)
T ss_pred             HhhhcccccCCc----eeec-cccCCcCceeeecCCceEEEecCCCcceeEEcccc
Confidence            999999998774    3332 34456999999999999999988888887766543

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=3.7e-11  Score=97.57  Aligned_cols=203  Identities=12%  Similarity=0.077  Sum_probs=129.3

Q ss_pred             CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCe-EEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCC
Q 023822           56 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTT-VIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD  134 (276)
Q Consensus        56 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  134 (276)
                      ..|.+-|.+... .+.+.... ......|+|+++. ++..+..+.+..|.++|+.+++...... ..+......|+|||+
T Consensus       169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~  245 (419)
T PRK04043        169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS  245 (419)
T ss_pred             ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence            355565554333 33333333 6788999999985 6554443225689999998887654433 455566788999998


Q ss_pred             EEEEe-eCC--CeEEEEeccCceeeeeEeecC-CCeeEecCCCcEEEEeeC----CeEEEEecccCCCCCeeeeeecCCC
Q 023822          135 CFISG-SLD--RTVLLWDQRAEKCQGLLRVQG-RPAAAYDDQGLVFAVAFG----GYIRMFDARKYEKGPFDIFSVGGDI  206 (276)
Q Consensus       135 ~l~~~-~~d--~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~d----~~i~~~d~~~~~~~~~~~~~~~~~~  206 (276)
                      .++.. +.+  ..|.++|+.+++......... .....|+|+|+.++..++    ..|+++|+.+++...   ....+. 
T Consensus       246 ~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r---lt~~g~-  321 (419)
T PRK04043        246 KLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ---VVFHGK-  321 (419)
T ss_pred             EEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe---CccCCC-
Confidence            66543 333  468888988776544333222 345689999987776663    278888887655311   111111 


Q ss_pred             CCceEEEECCCCcEEEEeecC---------CcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCC
Q 023822          207 SDANVVKFSNDGRLMLLTTME---------GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       207 ~~i~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  273 (276)
                         ....|+|+|++|+..+..         ..|.+.|+.++... .+..   . .......|+|||+.|+..+.++
T Consensus       322 ---~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~---~-~~~~~p~~SPDG~~I~f~~~~~  389 (419)
T PRK04043        322 ---NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTA---N-GVNQFPRFSSDGGSIMFIKYLG  389 (419)
T ss_pred             ---cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCC---C-CCcCCeEECCCCCEEEEEEccC
Confidence               124899999988877643         36888898887653 3331   1 2233578999999887766543

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.52  E-value=7.5e-12  Score=99.34  Aligned_cols=216  Identities=16%  Similarity=0.230  Sum_probs=147.5

Q ss_pred             CCCcEEEEEEcCCC--CEEEE-----eecCCeEEEEEccCCeeeeee---eeeeeceEEEEEeccCCeEEEeccCCC---
Q 023822           33 YNGRISSMDFHKSS--SYLVT-----ASDDESIRLYDVTAATCLKTI---NSKKYGVDLVCFTSHPTTVIYSSKNGW---   99 (276)
Q Consensus        33 h~~~v~~~~~~~~~--~~l~~-----~~~d~~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~~~~---   99 (276)
                      |...|+.+.+||.+  ..+|+     .+.-+.++||..........+   ......=..+.|++-+.-|++......   
T Consensus       164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt  243 (566)
T KOG2315|consen  164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT  243 (566)
T ss_pred             eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCC
Confidence            56788999999853  34443     345568999987632211111   111223345788877775544322111   


Q ss_pred             ------CCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEE--eeCCCeEEEEeccCceeeeeEeecCCCeeEecC
Q 023822          100 ------DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFIS--GSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDD  171 (276)
Q Consensus       100 ------d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  171 (276)
                            ...++++++........+. ..++|.++.|+|+++.|++  |-.-.++.+||++. .++..+...+.+.+.|+|
T Consensus       244 n~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df~egpRN~~~fnp  321 (566)
T KOG2315|consen  244 NASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDFPEGPRNTAFFNP  321 (566)
T ss_pred             CccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEeCCCCCccceEECC
Confidence                  4578888887444444443 5789999999999986665  44567899999874 567777788889999999


Q ss_pred             CCcEEEEee----CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeec------CCcEEEEECCCCcEE
Q 023822          172 QGLVFAVAF----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM------EGHIHVLDSFRGTLL  241 (276)
Q Consensus       172 ~~~~l~~~~----d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~  241 (276)
                      .|++++.+.    .|.+.+||+.+.+.    +......  .-+-+.|+|||+++++++.      |+.++||+. +|..+
T Consensus       322 ~g~ii~lAGFGNL~G~mEvwDv~n~K~----i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l  394 (566)
T KOG2315|consen  322 HGNIILLAGFGNLPGDMEVWDVPNRKL----IAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLL  394 (566)
T ss_pred             CCCEEEEeecCCCCCceEEEeccchhh----ccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCcee
Confidence            999887766    49999999998554    3333322  3456899999999998863      788999995 77777


Q ss_pred             EEeecCCCCCCceEEEEECC
Q 023822          242 STYNVKPVSRNSTLEASFSP  261 (276)
Q Consensus       242 ~~~~~~~~~~~~v~~~~~s~  261 (276)
                      .....    ......+.|-|
T Consensus       395 ~~~~f----~sEL~qv~W~P  410 (566)
T KOG2315|consen  395 HEKMF----KSELLQVEWRP  410 (566)
T ss_pred             ehhhh----hHhHhheeeee
Confidence            66542    22566677765

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.51  E-value=5.2e-12  Score=100.26  Aligned_cols=229  Identities=17%  Similarity=0.213  Sum_probs=144.0

Q ss_pred             cEEEEEEcCCCCEEEEeec-----------CCeEEEEEccCCeeeeeeeeee---eceEEEEEeccCCeEEEeccCCCCC
Q 023822           36 RISSMDFHKSSSYLVTASD-----------DESIRLYDVTAATCLKTINSKK---YGVDLVCFTSHPTTVIYSSKNGWDE  101 (276)
Q Consensus        36 ~v~~~~~~~~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~~~~d~  101 (276)
                      .|.-+.|||+.++|+|=+.           ...++|||+.+|...+.+....   ..-.-..||.|+++++--.    ..
T Consensus       251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~----~~  326 (698)
T KOG2314|consen  251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMT----GN  326 (698)
T ss_pred             CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEec----cc
Confidence            4788999999999998652           2579999999999888886632   2234578999999999877    57


Q ss_pred             ceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCC-----CeEEEEeccCceeeee------------------
Q 023822          102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLD-----RTVLLWDQRAEKCQGL------------------  158 (276)
Q Consensus       102 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~------------------  158 (276)
                      .|.||+..+..++..-.-.-..|....|+|.++.||-=...     .++.+..+.+++.++.                  
T Consensus       327 sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gd  406 (698)
T KOG2314|consen  327 SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGD  406 (698)
T ss_pred             eEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCc
Confidence            78999876644332212223456677777777666532210     1122222211111000                  


Q ss_pred             -------------------------Eee-----------cCCCeeEecCCCcEEEEee----CCeEEEEecccCCCCCee
Q 023822          159 -------------------------LRV-----------QGRPAAAYDDQGLVFAVAF----GGYIRMFDARKYEKGPFD  198 (276)
Q Consensus       159 -------------------------~~~-----------~~~~~~~~~~~~~~l~~~~----d~~i~~~d~~~~~~~~~~  198 (276)
                                               +..           ..+...+|.|.|.-+++-.    ..++.+|.+++....+..
T Consensus       407 yLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~l  486 (698)
T KOG2314|consen  407 YLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSL  486 (698)
T ss_pred             EEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhh
Confidence                                     011           1123567888885554433    378899988853332322


Q ss_pred             eeeecCCCCCceEEEECCCCcEEEEe---ecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCC
Q 023822          199 IFSVGGDISDANVVKFSNDGRLMLLT---TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       199 ~~~~~~~~~~i~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  273 (276)
                      +..+..  ...+.+.|+|.|++++.+   |..|.+.++|+....+...-.   ......+.+.|.|.|+|+++++...
T Consensus       487 Vk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~---~eh~~at~veWDPtGRYvvT~ss~w  559 (698)
T KOG2314|consen  487 VKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTAS---PEHFAATEVEWDPTGRYVVTSSSSW  559 (698)
T ss_pred             hhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccC---ccccccccceECCCCCEEEEeeehh
Confidence            333322  467889999999998876   457889999987433322221   1224567789999999999988643

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.51  E-value=3.9e-12  Score=100.91  Aligned_cols=220  Identities=16%  Similarity=0.262  Sum_probs=145.0

Q ss_pred             cEEEEEEcCCCCEEEEe-----ecC-----CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEE
Q 023822           36 RISSMDFHKSSSYLVTA-----SDD-----ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL  105 (276)
Q Consensus        36 ~v~~~~~~~~~~~l~~~-----~~d-----~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~  105 (276)
                      .++++.|+|-+++|.+-     ..+     -.+++|+++++.....+......-++..|+.|....+-..    .+.+++
T Consensus        75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv----~nev~f  150 (566)
T KOG2315|consen   75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLV----SNEVQF  150 (566)
T ss_pred             eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhhhh----cceEEE
Confidence            68889999999988753     122     3577999998665555544333336888888776554444    667778


Q ss_pred             EEccCCceeeeecccCcceE----------------------------------------------------EEEeccCC
Q 023822          106 LSLHDNKYLRYFKGHHDRVV----------------------------------------------------SLSLCSSK  133 (276)
Q Consensus       106 ~d~~~~~~~~~~~~~~~~i~----------------------------------------------------~~~~~~~~  133 (276)
                      |++.+.+....- -|...|.                                                    .+.|++-|
T Consensus       151 ~~~~~f~~~~~k-l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~g  229 (566)
T KOG2315|consen  151 YDLGSFKTIQHK-LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLG  229 (566)
T ss_pred             EecCCccceeee-eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCC
Confidence            877653221110 0122222                                                    34455544


Q ss_pred             C-EEEEe--eCC---------CeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee---CCeEEEEecccCCCCCe
Q 023822          134 D-CFISG--SLD---------RTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF---GGYIRMFDARKYEKGPF  197 (276)
Q Consensus       134 ~-~l~~~--~~d---------~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~---d~~i~~~d~~~~~~~~~  197 (276)
                      + +|+.+  ..|         .++++.++....+.-.+ ..+++.++.|+|+++-+++..   -..+.+||++..-    
T Consensus       230 t~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~----  305 (566)
T KOG2315|consen  230 TALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP----  305 (566)
T ss_pred             ceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE----
Confidence            4 22222  112         24666666644444444 467788999999997766665   4899999998521    


Q ss_pred             eeeeecCCCCCceEEEECCCCcEEEEeec---CCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCC
Q 023822          198 DIFSVGGDISDANVVKFSNDGRLMLLTTM---EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVS  272 (276)
Q Consensus       198 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  272 (276)
                       ++.+  ..++-+++-|+|.|++++.++-   -|.|-|||..+.+++..+.   ..  .-+-+.|+|||+++++++..
T Consensus       306 -v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~---a~--~tt~~eW~PdGe~flTATTa  375 (566)
T KOG2315|consen  306 -VFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK---AA--NTTVFEWSPDGEYFLTATTA  375 (566)
T ss_pred             -eEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc---cC--CceEEEEcCCCcEEEEEecc
Confidence             3333  4457788999999999988774   4789999999999988887   22  23447899999999998765

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.50  E-value=3.1e-12  Score=95.79  Aligned_cols=244  Identities=12%  Similarity=0.128  Sum_probs=177.1

Q ss_pred             hccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEcc-CCeeeeee-eeeeeceEEEEEeccCCeEEEeccCCC
Q 023822           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVT-AATCLKTI-NSKKYGVDLVCFTSHPTTVIYSSKNGW   99 (276)
Q Consensus        22 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~~~   99 (276)
                      ........++||.+.|+....-|...-+++.+.|.+++||--. .++--..+ .....+++++.+.+....|+++-.   
T Consensus        12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~---   88 (404)
T KOG1409|consen   12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQD---   88 (404)
T ss_pred             cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEe---
Confidence            3445567789999999999999988889999999999999533 34433222 234567999999999999999988   


Q ss_pred             CCceEEEEcc----CCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe-ecCCCeeEecCCCc
Q 023822          100 DESLRLLSLH----DNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR-VQGRPAAAYDDQGL  174 (276)
Q Consensus       100 d~~i~~~d~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~  174 (276)
                      .|++.-+.+.    .....+.+..|...+..+-|+....++++.+.|..+.---.+.+..+..+. ......+.+.-.  
T Consensus        89 ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--  166 (404)
T KOG1409|consen   89 NGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--  166 (404)
T ss_pred             cceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--
Confidence            8888888653    445566777899999999999888999999999876555455544333321 111111111111  


Q ss_pred             EEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEE-EEeecCCCCCC
Q 023822          175 VFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL-STYNVKPVSRN  252 (276)
Q Consensus       175 ~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~  252 (276)
                      +...+. .|.|..-.+.....  ..+..+.+|..++.+++|.|..+.|++|..|..+.+||+--.+-+ ..+.   +|..
T Consensus       167 ~~fvGd~~gqvt~lr~~~~~~--~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~---gh~~  241 (404)
T KOG1409|consen  167 YAFVGDHSGQITMLKLEQNGC--QLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQ---GHND  241 (404)
T ss_pred             EEEecccccceEEEEEeecCC--ceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeec---cchh
Confidence            222333 56666666554332  236677899999999999999999999999999999998654433 3344   6888


Q ss_pred             ceEEEEECCCCcEEEEecCCCCC
Q 023822          253 STLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       253 ~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      .|..+...+.-+.|.++++||-+
T Consensus       242 kV~~l~~~~~t~~l~S~~edg~i  264 (404)
T KOG1409|consen  242 KVQALSYAQHTRQLISCGEDGGI  264 (404)
T ss_pred             hhhhhhhhhhheeeeeccCCCeE
Confidence            89999888888999999999854

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.48  E-value=4.1e-11  Score=93.72  Aligned_cols=213  Identities=14%  Similarity=0.143  Sum_probs=151.9

Q ss_pred             cCCCCEEEEeecCCeEEEEEccCCeeeeeeee------ee-----eceEEEE-Eec-cCCeEEEeccCCCCCceEEEEcc
Q 023822           43 HKSSSYLVTASDDESIRLYDVTAATCLKTINS------KK-----YGVDLVC-FTS-HPTTVIYSSKNGWDESLRLLSLH  109 (276)
Q Consensus        43 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~------~~-----~~v~~~~-~~~-~~~~l~~~~~~~~d~~i~~~d~~  109 (276)
                      +.||+.++-. .-|.|.+||.++.+....--+      ..     .+..-+. |++ +|.+++..+    .|...+.+..
T Consensus       275 nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS----RGkaFi~~~~  349 (668)
T COG4946         275 NSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS----RGKAFIMRPW  349 (668)
T ss_pred             CCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe----cCcEEEECCC
Confidence            3467766653 457899999876543221100      00     1111111 333 677888877    6888888776


Q ss_pred             CCceeeeecccCcceEEEEeccCCCEEEEeeCCC-eEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee-CCeEEE
Q 023822          110 DNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR-TVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF-GGYIRM  186 (276)
Q Consensus       110 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-d~~i~~  186 (276)
                      .+-.++.  +|...|.-..+..+++-++.|..|| .+-+||.++++..... ....+..+..+++|+.++++. ...|.+
T Consensus       350 ~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~v  427 (668)
T COG4946         350 DGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWV  427 (668)
T ss_pred             CCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEE
Confidence            6544432  4677788888888888899999999 8999999998865544 566788999999999988888 488999


Q ss_pred             EecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCC----cEEEEECCCCcEEEEeecCCCCCCceEEEEECCC
Q 023822          187 FDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG----HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  262 (276)
Q Consensus       187 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~  262 (276)
                      +|+.++..    ...-.....-|+.+.|+|+++++|.+--+|    .|+++|+.+++....-.    ..+.=.+-+|.||
T Consensus       428 ididngnv----~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT----~ta~DfsPaFD~d  499 (668)
T COG4946         428 IDIDNGNV----RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT----PTAYDFSPAFDPD  499 (668)
T ss_pred             EEecCCCe----eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC----CcccccCcccCCC
Confidence            99998764    222233445789999999999999987665    69999998888766554    3344456789999


Q ss_pred             CcEEEEec
Q 023822          263 GMFVISGR  270 (276)
Q Consensus       263 g~~l~~~~  270 (276)
                      |++|..-+
T Consensus       500 ~ryLYfLs  507 (668)
T COG4946         500 GRYLYFLS  507 (668)
T ss_pred             CcEEEEEe
Confidence            99886544

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.47  E-value=1.5e-11  Score=98.17  Aligned_cols=172  Identities=15%  Similarity=0.116  Sum_probs=131.1

Q ss_pred             ccCCeEEEeccCCCCCceEEEEccCCceeeeeccc---CcceEEEEec------c--------------CCCEEEEeeCC
Q 023822           86 SHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH---HDRVVSLSLC------S--------------SKDCFISGSLD  142 (276)
Q Consensus        86 ~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~---~~~i~~~~~~------~--------------~~~~l~~~~~d  142 (276)
                      |...+++....   ||.+++|+...++..+.+...   .+...+..|.      |              +-..++-|...
T Consensus         3 ~~~~~~A~~~~---~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~   79 (541)
T KOG4547|consen    3 PALDYFALSTG---DGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQ   79 (541)
T ss_pred             chhheEeecCC---CCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCC
Confidence            34567777777   999999999988876665421   2233333332      2              23467888889


Q ss_pred             CeEEEEeccCceeeeeE----eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCC
Q 023822          143 RTVLLWDQRAEKCQGLL----RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND  217 (276)
Q Consensus       143 ~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  217 (276)
                      |.|.+|++..++....+    +...+.++.++.+-..+.++. |..+..|+......    +.........+.+++.+||
T Consensus        80 g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~----~~~~~~~~~~~~sl~is~D  155 (541)
T KOG4547|consen   80 GSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI----IRIWKEQKPLVSSLCISPD  155 (541)
T ss_pred             ccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee----eeeeccCCCccceEEEcCC
Confidence            99999999999988777    455677777777665555554 99999999987543    4445556667899999999


Q ss_pred             CcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCC-----CcEEEEe
Q 023822          218 GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-----GMFVISG  269 (276)
Q Consensus       218 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----g~~l~~~  269 (276)
                      |+.|++++  +.|++||+++++.+..|.   +|.++|++++|..+     |.++.++
T Consensus       156 ~~~l~~as--~~ik~~~~~~kevv~~ft---gh~s~v~t~~f~~~~~g~~G~~vLss  207 (541)
T KOG4547|consen  156 GKILLTAS--RQIKVLDIETKEVVITFT---GHGSPVRTLSFTTLIDGIIGKYVLSS  207 (541)
T ss_pred             CCEEEecc--ceEEEEEccCceEEEEec---CCCcceEEEEEEEeccccccceeeec
Confidence            99998886  479999999999999999   89999999999877     6776654

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.46  E-value=4.9e-10  Score=87.73  Aligned_cols=205  Identities=11%  Similarity=0.015  Sum_probs=132.2

Q ss_pred             CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEecc---------CCCCCceEEEEccCCceeeeecccCc----
Q 023822           56 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK---------NGWDESLRLLSLHDNKYLRYFKGHHD----  122 (276)
Q Consensus        56 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------~~~d~~i~~~d~~~~~~~~~~~~~~~----  122 (276)
                      ++|.+.|..+++.+..+.....+- .+ ++|+++.++++..         .  +..|.+||..+.+.+..+.-...    
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~--~d~V~v~D~~t~~~~~~i~~p~~p~~~  102 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKR--TDYVEVIDPQTHLPIADIELPEGPRFL  102 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCC--CCEEEEEECccCcEEeEEccCCCchhh
Confidence            789999999999998887654433 34 9999999988875         3  78999999999999888763222    


Q ss_pred             ---ceEEEEeccCCCEEEEee-C-CCeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEeeCCeEEEEecccCCCCCe
Q 023822          123 ---RVVSLSLCSSKDCFISGS-L-DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPF  197 (276)
Q Consensus       123 ---~i~~~~~~~~~~~l~~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~  197 (276)
                         ....++++|||++++... . +..|.+.|+.+++.+..+....-..+.-.++..+++.+.||......+........
T Consensus       103 ~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~  182 (352)
T TIGR02658       103 VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKI  182 (352)
T ss_pred             ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEE
Confidence               234788999999888766 3 68999999999999988865443333333344444444455544443332211111


Q ss_pred             eeeee-cC-----CCCCceEEEECC-CCcEEEEeecCCcEEEEECCC-----CcEEEEeecCC----CCCCceEEEEECC
Q 023822          198 DIFSV-GG-----DISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFR-----GTLLSTYNVKP----VSRNSTLEASFSP  261 (276)
Q Consensus       198 ~~~~~-~~-----~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~----~~~~~v~~~~~s~  261 (276)
                      ..... ..     ...+    .|.+ +|++++...+ |.|.+.|+..     .+....+....    -..+...-++++|
T Consensus       183 ~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~  257 (352)
T TIGR02658       183 KPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR  257 (352)
T ss_pred             eeeeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC
Confidence            11111 00     0112    4455 8888777766 9999999543     33333322110    1223344599999


Q ss_pred             CCcEEEEe
Q 023822          262 EGMFVISG  269 (276)
Q Consensus       262 ~g~~l~~~  269 (276)
                      +++.|++.
T Consensus       258 dg~~lyV~  265 (352)
T TIGR02658       258 ARDRIYLL  265 (352)
T ss_pred             CCCEEEEE
Confidence            99988874

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.45  E-value=4.8e-10  Score=100.68  Aligned_cols=233  Identities=10%  Similarity=0.162  Sum_probs=150.8

Q ss_pred             EEEEcCC-CCEEEEeecCCeEEEEEccCCeeeeeeee-e-------------eeceEEEEEeccCCeEEEeccCCCCCce
Q 023822           39 SMDFHKS-SSYLVTASDDESIRLYDVTAATCLKTINS-K-------------KYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (276)
Q Consensus        39 ~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~-------------~~~v~~~~~~~~~~~l~~~~~~~~d~~i  103 (276)
                      .++++++ ++++++-+.++.|++||.. ++.+..+.. .             -.....+++.+++..++++...  ++.|
T Consensus       572 gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~--n~~I  648 (1057)
T PLN02919        572 KLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE--NHAL  648 (1057)
T ss_pred             eEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC--CceE
Confidence            5788774 5566777778899999975 444433322 0             1235789999988877777652  6789


Q ss_pred             EEEEccCCceeeeeccc-----------------CcceEEEEecc-CCCEEEEeeCCCeEEEEeccCceeeeeE------
Q 023822          104 RLLSLHDNKYLRYFKGH-----------------HDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLL------  159 (276)
Q Consensus       104 ~~~d~~~~~~~~~~~~~-----------------~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~------  159 (276)
                      +.+|+.++. +.++.+-                 -.....++++| ++.++++...++.|++||..++......      
T Consensus       649 r~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~  727 (1057)
T PLN02919        649 REIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER  727 (1057)
T ss_pred             EEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence            999987754 3332110                 11246799999 5666777777899999998776543211      


Q ss_pred             ----------eecCCCeeEecCCCcEEEEe-e-CCeEEEEecccCCCCCe---------eeeeecC--------CCCCce
Q 023822          160 ----------RVQGRPAAAYDDQGLVFAVA-F-GGYIRMFDARKYEKGPF---------DIFSVGG--------DISDAN  210 (276)
Q Consensus       160 ----------~~~~~~~~~~~~~~~~l~~~-~-d~~i~~~d~~~~~~~~~---------~~~~~~~--------~~~~i~  210 (276)
                                .......++++|++..|.++ . ++.|++||+.++.....         ....+..        ......
T Consensus       728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~  807 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL  807 (1057)
T ss_pred             cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence                      01223468999998744444 3 79999999886432100         0000100        112356


Q ss_pred             EEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecC----------CCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          211 VVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK----------PVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       211 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      .++++++|+++++-+.++.|++||..++.........          .+.-.....++++++|+++++-+.++.|
T Consensus       808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~I  882 (1057)
T PLN02919        808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLI  882 (1057)
T ss_pred             eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEE
Confidence            8999999998888888999999998877665433210          0112357789999999988887777654

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.45  E-value=3.7e-13  Score=107.01  Aligned_cols=161  Identities=20%  Similarity=0.307  Sum_probs=124.0

Q ss_pred             eeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccC-------CeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCC
Q 023822           28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA-------ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD  100 (276)
Q Consensus        28 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d  100 (276)
                      ..+.||+..|..++--.+.+.+++++.|.+|++|.++.       ..+..+++.|+.+|.++.|..+.++++++     |
T Consensus       729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc-----D  803 (1034)
T KOG4190|consen  729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC-----D  803 (1034)
T ss_pred             ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec-----c
Confidence            45789999999988877888999999999999999863       34677889999999999999999888876     8


Q ss_pred             CceEEEEccCCceeeeecc--cCcceEEEEecc--CCCEEE-EeeCCCeEEEEeccCceeeeeEee-------cCCCeeE
Q 023822          101 ESLRLLSLHDNKYLRYFKG--HHDRVVSLSLCS--SKDCFI-SGSLDRTVLLWDQRAEKCQGLLRV-------QGRPAAA  168 (276)
Q Consensus       101 ~~i~~~d~~~~~~~~~~~~--~~~~i~~~~~~~--~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~-------~~~~~~~  168 (276)
                      +.|.+||.--++++..+..  ..+.+..+..-+  +...++ .++...+|+++|.+..+....++.       ...++++
T Consensus       804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia  883 (1034)
T KOG4190|consen  804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA  883 (1034)
T ss_pred             CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence            9999999877776654321  122233333333  334444 447789999999998877766622       2255899


Q ss_pred             ecCCCcEEEEee-CCeEEEEecccCC
Q 023822          169 YDDQGLVFAVAF-GGYIRMFDARKYE  193 (276)
Q Consensus       169 ~~~~~~~l~~~~-d~~i~~~d~~~~~  193 (276)
                      ..+.|+.++++- +|.|.+.|.++++
T Consensus       884 Va~~GN~lAa~LSnGci~~LDaR~G~  909 (1034)
T KOG4190|consen  884 VADKGNKLAAALSNGCIAILDARNGK  909 (1034)
T ss_pred             eccCcchhhHHhcCCcEEEEecCCCc
Confidence            999999888887 8999999999876

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.44  E-value=6e-11  Score=87.24  Aligned_cols=229  Identities=15%  Similarity=0.149  Sum_probs=151.8

Q ss_pred             CCcEEEEEEcC---CCC-EEEEeecCCeEEEEEccCCeeeeeeeee------eeceEEEEEeccCCeEEEeccCCCCCce
Q 023822           34 NGRISSMDFHK---SSS-YLVTASDDESIRLYDVTAATCLKTINSK------KYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (276)
Q Consensus        34 ~~~v~~~~~~~---~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~~~~d~~i  103 (276)
                      +..+..+.|..   +|. .|+-+..+|.|.++..........+++-      .....++.|++.+..++++..   +|.+
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s---~G~~  145 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDS---RGSI  145 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcC---CCcE
Confidence            45567777764   455 5667778899999886644433333321      113567889999999988887   8888


Q ss_pred             EEEEccCCce--eeeecccCcceEEEEeccC-CCEEEEeeCCCeEEEEeccCce-eee---eEeecCCCeeEecC-CCcE
Q 023822          104 RLLSLHDNKY--LRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEK-CQG---LLRVQGRPAAAYDD-QGLV  175 (276)
Q Consensus       104 ~~~d~~~~~~--~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~-~~~---~~~~~~~~~~~~~~-~~~~  175 (276)
                      .+-+......  ++.++.|.-+++...|+.. .+.+.+|+.|+.+..||+|..+ .+.   ..|..++.++.-+| .+.+
T Consensus       146 ~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~  225 (339)
T KOG0280|consen  146 SGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTY  225 (339)
T ss_pred             EEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCce
Confidence            8666554433  4478999999999999864 4589999999999999999433 222   22666777777665 4677


Q ss_pred             EEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCC--CcEEEEeecCCcEEEEECCCCcEE--EEeecCCCC
Q 023822          176 FAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND--GRLMLLTTMEGHIHVLDSFRGTLL--STYNVKPVS  250 (276)
Q Consensus       176 l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~  250 (276)
                      +++|+ |..|++||.|+..++   ++. ..-.+.|..+.++|.  +++|+++-..| .+|-+...+...  ..+..+..|
T Consensus       226 I~TGsYDe~i~~~DtRnm~kP---l~~-~~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~h  300 (339)
T KOG0280|consen  226 IATGSYDECIRVLDTRNMGKP---LFK-AKVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIH  300 (339)
T ss_pred             EEEeccccceeeeehhcccCc---ccc-CccccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccc
Confidence            77777 999999999976653   222 223368999999995  34444444444 667766544322  122222256


Q ss_pred             CCceEEEEECCCCcEEEEec
Q 023822          251 RNSTLEASFSPEGMFVISGR  270 (276)
Q Consensus       251 ~~~v~~~~~s~~g~~l~~~~  270 (276)
                      .+-+..-.|......||+++
T Consensus       301 dSl~YG~DWd~~~~~lATCs  320 (339)
T KOG0280|consen  301 DSLCYGGDWDSKDSFLATCS  320 (339)
T ss_pred             cceeeccccccccceeeeee
Confidence            66666667755555677754

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.43  E-value=8.3e-12  Score=93.62  Aligned_cols=199  Identities=15%  Similarity=0.259  Sum_probs=139.6

Q ss_pred             CcEEEEEEcCCCC--EEEEeecCCeEEEEEccCCeee-----------------------------------eee-eeee
Q 023822           35 GRISSMDFHKSSS--YLVTASDDESIRLYDVTAATCL-----------------------------------KTI-NSKK   76 (276)
Q Consensus        35 ~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~-----------------------------------~~~-~~~~   76 (276)
                      ..|..+.|.++++  .++....|.+|++|.+......                                   +.+ ..|.
T Consensus        85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt  164 (433)
T KOG1354|consen   85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT  164 (433)
T ss_pred             hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence            4688899988654  5677779999999987532110                                   001 2466


Q ss_pred             eceEEEEEeccCCeEEEeccCCCCCceEEEEccCCce---eeeeccc-----CcceEEEEeccCC-CEEEEeeCCCeEEE
Q 023822           77 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY---LRYFKGH-----HDRVVSLSLCSSK-DCFISGSLDRTVLL  147 (276)
Q Consensus        77 ~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~---~~~~~~~-----~~~i~~~~~~~~~-~~l~~~~~d~~i~i  147 (276)
                      .-|.++.++.|...++++.    |=.|.+|+++--..   +..++++     ..-|++..|+|.. +.|+-.+..|+|++
T Consensus       165 yhiNSIS~NsD~Et~lSAD----dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL  240 (433)
T KOG1354|consen  165 YHINSISVNSDKETFLSAD----DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL  240 (433)
T ss_pred             eEeeeeeecCccceEeecc----ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence            7789999999999999987    88999999864322   2222333     3468899999954 57888888999999


Q ss_pred             EeccCcee----eeeE--e------------ecCCCeeEecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCC----
Q 023822          148 WDQRAEKC----QGLL--R------------VQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGD----  205 (276)
Q Consensus       148 wd~~~~~~----~~~~--~------------~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~----  205 (276)
                      -|+|....    .+.+  .            ...+..+.|+++|+++.+-.--+|++||+..... +...+.....    
T Consensus       241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~-pv~t~~vh~~lr~k  319 (433)
T KOG1354|consen  241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAK-PVETYPVHEYLRSK  319 (433)
T ss_pred             eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCC-cceEEeehHhHHHH
Confidence            99994321    1111  1            1234578999999999988889999999965432 3333322111    


Q ss_pred             ------CC---CceEEEECCCCcEEEEeecCCcEEEEECCCC
Q 023822          206 ------IS---DANVVKFSNDGRLMLLTTMEGHIHVLDSFRG  238 (276)
Q Consensus       206 ------~~---~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  238 (276)
                            ..   .-..++|+-++.++++|+..+..++++...|
T Consensus       320 Lc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  320 LCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             HHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence                  01   1234789999999999999999999996544

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.43  E-value=1.6e-11  Score=91.16  Aligned_cols=234  Identities=18%  Similarity=0.304  Sum_probs=153.7

Q ss_pred             CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCe-----eeeeeeeee------------eceEEEEEeccC--CeEEEe
Q 023822           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT-----CLKTINSKK------------YGVDLVCFTSHP--TTVIYS   94 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~--~~l~~~   94 (276)
                      ...|+++.|...|.+|++|...|.|.+|.-+...     ....++.|.            ..|..+.|..++  .+++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            4679999999999999999999999999865432     222344442            357788887654  345555


Q ss_pred             ccCCCCCceEEEEccCCc-------------------e-----------------------eeee-cccCcceEEEEecc
Q 023822           95 SKNGWDESLRLLSLHDNK-------------------Y-----------------------LRYF-KGHHDRVVSLSLCS  131 (276)
Q Consensus        95 ~~~~~d~~i~~~d~~~~~-------------------~-----------------------~~~~-~~~~~~i~~~~~~~  131 (276)
                      +.   |.+|++|.+....                   +                       .+.+ ..|+-.|.++.|+.
T Consensus       106 tN---dktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns  182 (460)
T COG5170         106 TN---DKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS  182 (460)
T ss_pred             cC---CceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC
Confidence            55   9999999875420                   0                       0011 35667789999999


Q ss_pred             CCCEEEEeeCCCeEEEEeccCceeeeeE---ee-------cCCCeeEecCCC--cEEEEeeCCeEEEEecccCCCC--Ce
Q 023822          132 SKDCFISGSLDRTVLLWDQRAEKCQGLL---RV-------QGRPAAAYDDQG--LVFAVAFGGYIRMFDARKYEKG--PF  197 (276)
Q Consensus       132 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~-------~~~~~~~~~~~~--~~l~~~~d~~i~~~d~~~~~~~--~~  197 (276)
                      |...++++. |-+|.+|++.....-..+   ..       .-+.+..|+|..  .++.+++.|.|++-|+|....-  +.
T Consensus       183 D~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~  261 (460)
T COG5170         183 DKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK  261 (460)
T ss_pred             chheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch
Confidence            888887765 778999998754322222   11       124577888864  4555666899999999953210  00


Q ss_pred             eee----------eecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCC-cEEEEeecCCC---------CCCce---
Q 023822          198 DIF----------SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG-TLLSTYNVKPV---------SRNST---  254 (276)
Q Consensus       198 ~~~----------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~---------~~~~v---  254 (276)
                      ..+          .+..-...|..+.|+++|+|+++-+. -+|++||.... .++.++..+..         ....|   
T Consensus       262 klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdk  340 (460)
T COG5170         262 KLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDK  340 (460)
T ss_pred             hhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeee
Confidence            011          11223356888999999999987654 47999998754 34555532110         11222   


Q ss_pred             EEEEECCCCcEEEEecCC
Q 023822          255 LEASFSPEGMFVISGRVS  272 (276)
Q Consensus       255 ~~~~~s~~g~~l~~~~~d  272 (276)
                      ..+.||.|.+.+.+|+.+
T Consensus       341 FeisfSgd~~~v~sgsy~  358 (460)
T COG5170         341 FEISFSGDDKHVLSGSYS  358 (460)
T ss_pred             EEEEecCCcccccccccc
Confidence            347888888888888765

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.42  E-value=1.4e-10  Score=84.33  Aligned_cols=224  Identities=14%  Similarity=0.105  Sum_probs=148.4

Q ss_pred             CCEEEEeecCCeEEEEEccCCee-eeeeeeeeeceEEEEEecc-CCeEEEeccCCCCCceEEEEccCCceeeeecccCcc
Q 023822           46 SSYLVTASDDESIRLYDVTAATC-LKTINSKKYGVDLVCFTSH-PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDR  123 (276)
Q Consensus        46 ~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~  123 (276)
                      ..+||.|+..|...+|...+.+. ......+...|.-+.=..+ ...+..++.   |.++++.++..+..........-.
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sn---dht~k~~~~~~~s~~~~~h~~~~~  160 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASN---DHTGKTMVVSGDSNKFAVHNQNLT  160 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccC---CcceeEEEEecCcccceeeccccc
Confidence            35899999999999999886543 3333444443332222112 223445555   888888887655432222111123


Q ss_pred             eEEEEeccCCCEEEEeeCCCeEEEEeccCceee-eeE----eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCe
Q 023822          124 VVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ-GLL----RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPF  197 (276)
Q Consensus       124 i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~----~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~  197 (276)
                      +.+++++++++++++.+....|..|.+...... ..+    .....-+..|+.....+|++. ||++.+||++....+-.
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~  240 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA  240 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence            789999999999999999999999998754322 122    223344788888888888888 99999999998664322


Q ss_pred             e-eeeecCCCCCceEEEECCCC--cEEEEeecCCcEEEEECCCCcEEEEeecCC----CC-CCceEEEEECCCCcEEEEe
Q 023822          198 D-IFSVGGDISDANVVKFSNDG--RLMLLTTMEGHIHVLDSFRGTLLSTYNVKP----VS-RNSTLEASFSPEGMFVISG  269 (276)
Q Consensus       198 ~-~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~-~~~v~~~~~s~~g~~l~~~  269 (276)
                      . ....+.|.+.+..+.|++.|  .+|+..-.-+.+.+.|+++++..+.+...+    .| ...|....|+.++.-+.+.
T Consensus       241 ~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~  320 (344)
T KOG4532|consen  241 EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVK  320 (344)
T ss_pred             hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccc
Confidence            2 23345688899999999876  345555556789999999988766654221    12 2337777888777666555


Q ss_pred             cCC
Q 023822          270 RVS  272 (276)
Q Consensus       270 ~~d  272 (276)
                      +++
T Consensus       321 ~e~  323 (344)
T KOG4532|consen  321 NEL  323 (344)
T ss_pred             cch
Confidence            543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.42  E-value=1.2e-11  Score=101.24  Aligned_cols=233  Identities=11%  Similarity=0.184  Sum_probs=170.0

Q ss_pred             ccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeee--eeeeceEEEEEeccCCeEEEeccCCCC
Q 023822           23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN--SKKYGVDLVCFTSHPTTVIYSSKNGWD  100 (276)
Q Consensus        23 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~~~d  100 (276)
                      .+...+++.||.+.|.-+.|+.+.+.|-++..+|.|.+|-+-+|.....+.  ..++-|.+++|+.+|..+.....   |
T Consensus        60 nLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYe---D  136 (1189)
T KOG2041|consen   60 NLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYE---D  136 (1189)
T ss_pred             ccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEc---c
Confidence            456678899999999999999999999999999999999998876544432  34567899999999999999998   9


Q ss_pred             CceEEEEccCCcee-eeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeee-----eE--------eecCCCe
Q 023822          101 ESLRLLSLHDNKYL-RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG-----LL--------RVQGRPA  166 (276)
Q Consensus       101 ~~i~~~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-----~~--------~~~~~~~  166 (276)
                      |.|.+=.++.++.- +.+++  .....+.|++|.+.++.+-.+|.+++||....-..+     ..        ....+..
T Consensus       137 GavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~  214 (1189)
T KOG2041|consen  137 GAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAE  214 (1189)
T ss_pred             CCEEEEeeccceecchhcch--heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccc
Confidence            99988877655432 12222  123478899999988888899999999976431110     00        1122334


Q ss_pred             eEec--------CCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecC---------C
Q 023822          167 AAYD--------DQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME---------G  228 (276)
Q Consensus       167 ~~~~--------~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------g  228 (276)
                      +.|.        |+...++++. +|.+.+..-.+... |. ++.   ..-.+..+.|+|+|..|++++.+         +
T Consensus       215 i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~-Pv-v~d---tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n  289 (1189)
T KOG2041|consen  215 IEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE-PV-VVD---TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSN  289 (1189)
T ss_pred             eeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC-Ce-EEe---cccEeecceecCCCcEEEEccCcccccCccccc
Confidence            4443        5777788887 68888876655332 21 122   12467889999999999998753         2


Q ss_pred             cEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEe
Q 023822          229 HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG  269 (276)
Q Consensus       229 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  269 (276)
                      .|.+|. .-|+.+..++   .....|++++|-..|-.+|.+
T Consensus       290 ~v~Fys-p~G~i~gtlk---vpg~~It~lsWEg~gLriA~A  326 (1189)
T KOG2041|consen  290 KVHFYS-PYGHIVGTLK---VPGSCITGLSWEGTGLRIAIA  326 (1189)
T ss_pred             eEEEec-cchhheEEEe---cCCceeeeeEEcCCceEEEEE
Confidence            577776 5688888888   577899999998888776655

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.41  E-value=1.9e-13  Score=113.94  Aligned_cols=224  Identities=17%  Similarity=0.187  Sum_probs=165.1

Q ss_pred             hhccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCC
Q 023822           21 LQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD  100 (276)
Q Consensus        21 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d  100 (276)
                      ...++.++.++.|+...+|++|+-+.+.|+.|+..|.|+++++.+|.....+.+|..+++.+.-+.+|..+++.+..+ .
T Consensus      1088 FSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S-~ 1166 (1516)
T KOG1832|consen 1088 FSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSS-S 1166 (1516)
T ss_pred             HhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeecccc-C
Confidence            356788899999999999999999999999999999999999999999999999999999999999999888877621 3


Q ss_pred             CceEEEEccC-CceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE------eecCCCeeEecCCC
Q 023822          101 ESLRLLSLHD-NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL------RVQGRPAAAYDDQG  173 (276)
Q Consensus       101 ~~i~~~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------~~~~~~~~~~~~~~  173 (276)
                      --..+|++.. +.+..++.    .-.++.|+.....-+.|+......+||+.+.....++      .....++..|+|+.
T Consensus      1167 PlsaLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D 1242 (1516)
T KOG1832|consen 1167 PLSALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCD 1242 (1516)
T ss_pred             chHHHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCc
Confidence            3678999754 33344443    3356788765444445555567899999998877764      12234688999998


Q ss_pred             cEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCc
Q 023822          174 LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS  253 (276)
Q Consensus       174 ~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  253 (276)
                      .++.-  ||  .+||++..+.    +..+..-. .-..-.|+|.|..++.-+     .|||+++.+.++....     -.
T Consensus      1243 ~LIln--dG--vLWDvR~~~a----Ih~FD~ft-~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~-----Ld 1303 (1516)
T KOG1832|consen 1243 TLILN--DG--VLWDVRIPEA----IHRFDQFT-DYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPS-----LD 1303 (1516)
T ss_pred             ceEee--Cc--eeeeeccHHH----Hhhhhhhe-ecccccccCCCceEEeec-----hhhhhHHHHHHhcCcc-----cc
Confidence            87653  33  6899987542    32222211 112236999998888765     4999999988877651     22


Q ss_pred             eEEEEECCCCcEEEE
Q 023822          254 TLEASFSPEGMFVIS  268 (276)
Q Consensus       254 v~~~~~s~~g~~l~~  268 (276)
                      -..+.|+..|..++.
T Consensus      1304 qc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1304 QCAVTFNSTGDVMYA 1318 (1516)
T ss_pred             ceEEEeccCccchhh
Confidence            346788888876654

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=99.41  E-value=1.6e-11  Score=102.90  Aligned_cols=182  Identities=15%  Similarity=0.248  Sum_probs=144.1

Q ss_pred             CCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceE
Q 023822           46 SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV  125 (276)
Q Consensus        46 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~  125 (276)
                      +..++-|+-...+..+|+.+.+..+......+.|.-++.  +++.+.+|..   .|+|.+-|.++.+.+.++..|.+.|.
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t---~G~V~LrD~~s~~~iht~~aHs~siS  221 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDT---RGTVFLRDPNSFETIHTFDAHSGSIS  221 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecc---cceEEeecCCcCceeeeeecccccee
Confidence            456677777777888999888887777666656666665  6788888888   99999999999999999999999998


Q ss_pred             EEEeccCCCEEEEeeC---------CCeEEEEeccCceeeeeEeec-CCCeeEecCC--CcEEEEeeCCeEEEEecccCC
Q 023822          126 SLSLCSSKDCFISGSL---------DRTVLLWDQRAEKCQGLLRVQ-GRPAAAYDDQ--GLVFAVAFGGYIRMFDARKYE  193 (276)
Q Consensus       126 ~~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~--~~~l~~~~d~~i~~~d~~~~~  193 (276)
                      ++..  .|+.|++|+.         |..|++||+|..+.+..+... ....+.|+|.  .++++++..|+..+-|..+..
T Consensus       222 DfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls  299 (1118)
T KOG1275|consen  222 DFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLS  299 (1118)
T ss_pred             eeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccC
Confidence            8765  7899999986         556899999998877766333 2345677775  466666678999999965554


Q ss_pred             CCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEE
Q 023822          194 KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD  234 (276)
Q Consensus       194 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  234 (276)
                      .++............+..+.++++|+.++.|..+|.|.+|.
T Consensus       300 NP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  300 NPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             CCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            44444555555556699999999999999999999999997

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.39  E-value=3.2e-10  Score=88.87  Aligned_cols=122  Identities=11%  Similarity=0.150  Sum_probs=101.8

Q ss_pred             cCCCcEEEEEEcCCCCEEEEeecCC-eEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccC
Q 023822           32 DYNGRISSMDFHKSSSYLVTASDDE-SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD  110 (276)
Q Consensus        32 ~h~~~v~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~  110 (276)
                      +|.+.|.-..+..+++-++.|..|| .+-|+|..+++. ..+...-+.|.++..+++|++++++..   ...|.+.|+.+
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNd---r~el~vididn  432 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVAND---RFELWVIDIDN  432 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcC---ceEEEEEEecC
Confidence            5778888888888888999999999 899999887664 445555678999999999999999987   88999999999


Q ss_pred             CceeeeecccCcceEEEEeccCCCEEEEeeCCC----eEEEEeccCceeee
Q 023822          111 NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR----TVLLWDQRAEKCQG  157 (276)
Q Consensus       111 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~----~i~iwd~~~~~~~~  157 (276)
                      ++....-+...+-|+.+.|+|+++++|-+--+|    .|+++|+..++...
T Consensus       433 gnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~  483 (668)
T COG4946         433 GNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD  483 (668)
T ss_pred             CCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEE
Confidence            987666566678899999999999999876655    69999998876543

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.39  E-value=2.7e-11  Score=89.01  Aligned_cols=199  Identities=15%  Similarity=0.090  Sum_probs=134.7

Q ss_pred             EEEEEEcCCCCEEEEeecCCeEEEEEccCCee--eeeeeeeeeceEEEEEeccCC-eEEEeccCCCCCceEEEEccC-Cc
Q 023822           37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATC--LKTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDESLRLLSLHD-NK  112 (276)
Q Consensus        37 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~d~~i~~~d~~~-~~  112 (276)
                      ..++.|++.+..++++-.+|.+.+-+......  ++.++.|+.+.+-..|+.... .+.+|+.   |+.+.-||++. ++
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgD---D~~l~~~D~R~p~~  200 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGD---DGSLSCWDIRIPKT  200 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCC---CceEEEEEecCCcc
Confidence            45778888888899998999988666554433  447889999999999987554 5566666   99999999983 33


Q ss_pred             eeee-ecccCcceEEEEecc-CCCEEEEeeCCCeEEEEeccC-ceeeeeE-eecCCCeeEecCC--CcEEEEeeCCeEEE
Q 023822          113 YLRY-FKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRA-EKCQGLL-RVQGRPAAAYDDQ--GLVFAVAFGGYIRM  186 (276)
Q Consensus       113 ~~~~-~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~-~~~~~~~-~~~~~~~~~~~~~--~~~l~~~~d~~i~~  186 (276)
                      .+.. .+.|...|.++.-+| .+.++++|++|..|++||.|+ ++++..- ..+++..+..+|.  +++++++.-+-.++
T Consensus       201 ~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki  280 (339)
T KOG0280|consen  201 FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKI  280 (339)
T ss_pred             eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceE
Confidence            3433 456888999998876 466999999999999999995 4554443 4466778888874  35666666555677


Q ss_pred             EecccCCCC-CeeeeeecCCCCCceEEEECCCCcEEEEee-cCCcEE-EEECCCC
Q 023822          187 FDARKYEKG-PFDIFSVGGDISDANVVKFSNDGRLMLLTT-MEGHIH-VLDSFRG  238 (276)
Q Consensus       187 ~d~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~-i~d~~~~  238 (276)
                      -+....... .........|.+-...-.|.....+||+++ .|+.++ +|-.-++
T Consensus       281 ~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  281 LDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             EEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence            776654432 111222334444444445544445677765 466644 6654443

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.36  E-value=5.4e-10  Score=88.15  Aligned_cols=220  Identities=17%  Similarity=0.219  Sum_probs=154.4

Q ss_pred             CcEEEEEEcCCC--CEEEE-----eecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccC------CC--
Q 023822           35 GRISSMDFHKSS--SYLVT-----ASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN------GW--   99 (276)
Q Consensus        35 ~~v~~~~~~~~~--~~l~~-----~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~------~~--   99 (276)
                      ..|...+|+|.+  ..||.     .+.++.+++|.+..+..+.+-...+..-..+.|++.|+++++-...      ++  
T Consensus       174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfg  253 (561)
T COG5354         174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFG  253 (561)
T ss_pred             cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceec
Confidence            568888899853  34443     4567899999998877776665555556678999999988764321      00  


Q ss_pred             CCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEee--CCCeEEEEeccCceeeeeEeecCCCeeEecCCCcEEE
Q 023822          100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS--LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFA  177 (276)
Q Consensus       100 d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~  177 (276)
                      ...++++++........ ....++|...+|.|.++.|++.+  .+..+.++|++.. ....+.....+.+.|+|.++++.
T Consensus       254 esnLyl~~~~e~~i~V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~~rNT~~fsp~~r~il  331 (561)
T COG5354         254 ESNLYLLRITERSIPVE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQKRNTIFFSPHERYIL  331 (561)
T ss_pred             cceEEEEeeccccccee-ccccccceeeeecccCCceeEEecccccceeecccccc-eEEecCCcccccccccCcccEEE
Confidence            46788888875443333 25688999999999998776655  6788999999987 55555667778899999998877


Q ss_pred             Eee----CCeEEEEecccCCCCCeeee-eecCCCCCceEEEECCCCcEEEEee------cCCcEEEEECCCCcEEEEeec
Q 023822          178 VAF----GGYIRMFDARKYEKGPFDIF-SVGGDISDANVVKFSNDGRLMLLTT------MEGHIHVLDSFRGTLLSTYNV  246 (276)
Q Consensus       178 ~~~----d~~i~~~d~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~  246 (276)
                      ...    .|.+.+||......    .. .+.+.  ...-+.|+|+++++.+..      .|..|.|||+......     
T Consensus       332 ~agF~nl~gni~i~~~~~rf~----~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f-----  400 (561)
T COG5354         332 FAGFDNLQGNIEIFDPAGRFK----VAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF-----  400 (561)
T ss_pred             EecCCccccceEEeccCCceE----EEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh-----
Confidence            655    48999999876332    22 23222  345578999999887764      4788999997543322     


Q ss_pred             CCCCCCceEEEEECCCCcEEEEecCCC
Q 023822          247 KPVSRNSTLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       247 ~~~~~~~v~~~~~s~~g~~l~~~~~dg  273 (276)
                            ..+.+.|.|.|++..+.+.++
T Consensus       401 ------el~~~~W~p~~~~~ttsSs~~  421 (561)
T COG5354         401 ------ELTNITWDPSGQYVTTSSSCP  421 (561)
T ss_pred             ------hhhhccccCCcccceeeccCC
Confidence                  334567777777766665543

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.36  E-value=1.3e-09  Score=96.34  Aligned_cols=232  Identities=15%  Similarity=0.181  Sum_probs=156.2

Q ss_pred             CCCcEEEEEEcCCCCEEEEeecCCeEEEE----EccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEc
Q 023822           33 YNGRISSMDFHKSSSYLVTASDDESIRLY----DVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL  108 (276)
Q Consensus        33 h~~~v~~~~~~~~~~~l~~~~~d~~i~iw----d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~  108 (276)
                      ..+.|.++.|-++...++.+..+|.|.+.    +..... +.....-...|.+++|+||...++.++.   ++++.+..-
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~---~~~l~~mt~  149 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTG---EGNLLLMTR  149 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeC---CCEEEEEec
Confidence            34689999999999999999999999999    544332 3333344668999999999999999987   788777642


Q ss_pred             cC-----------------------Cceeeeecc------------------------cCcceEEEEeccCCCEEEEeeC
Q 023822          109 HD-----------------------NKYLRYFKG------------------------HHDRVVSLSLCSSKDCFISGSL  141 (276)
Q Consensus       109 ~~-----------------------~~~~~~~~~------------------------~~~~i~~~~~~~~~~~l~~~~~  141 (276)
                      .=                       |+....|.+                        ..+.-..++|-.||.+||+.+.
T Consensus       150 ~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~  229 (928)
T PF04762_consen  150 DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSV  229 (928)
T ss_pred             cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEE
Confidence            10                       000001100                        2224457889999999998875


Q ss_pred             ---C---CeEEEEeccCceeeeeEe-e-cCCCeeEecCCCcEEEEee----CCeEEEEecccCCCCCeeeeeecCCCCCc
Q 023822          142 ---D---RTVLLWDQRAEKCQGLLR-V-QGRPAAAYDDQGLVFAVAF----GGYIRMFDARKYEKGPFDIFSVGGDISDA  209 (276)
Q Consensus       142 ---d---~~i~iwd~~~~~~~~~~~-~-~~~~~~~~~~~~~~l~~~~----d~~i~~~d~~~~~~~~~~~~~~~~~~~~i  209 (276)
                         .   ..+++|+-+ +.....-. . +--..++|-|.|.++|+..    ...|.+|.-...+...+.+. .......+
T Consensus       230 ~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~-~~~~~~~v  307 (928)
T PF04762_consen  230 EPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLR-FDPEEEKV  307 (928)
T ss_pred             EcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecC-CCCCCcee
Confidence               2   479999965 44333332 1 1134789999999999987    26777787665554433222 23455678


Q ss_pred             eEEEECCCCcEEEEeecCCcEEEEECCCCcE--EEEeecCCCCCCceEEEEECCCC-cEEEEecCCC
Q 023822          210 NVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL--LSTYNVKPVSRNSTLEASFSPEG-MFVISGRVSP  273 (276)
Q Consensus       210 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg  273 (276)
                      ..+.|++++..||..-.|. |.+|-..+..-  .+.+..  .....+..+.|+|.. ..|...+.+|
T Consensus       308 ~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~--~~~~~~~~~~Wdpe~p~~L~v~t~~g  371 (928)
T PF04762_consen  308 IELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRF--SSSESVNFVKWDPEKPLRLHVLTSNG  371 (928)
T ss_pred             eEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEc--cCCCCCCceEECCCCCCEEEEEecCC
Confidence            9999999999999977665 99999888764  233332  123345559999954 3455555533

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.36  E-value=1.9e-09  Score=96.86  Aligned_cols=200  Identities=16%  Similarity=0.231  Sum_probs=131.2

Q ss_pred             EEEEEEcCCCCEEEEee-cCCeEEEEEccCCeeeeeeeee-----------------eeceEEEEEeccCCeEEEeccCC
Q 023822           37 ISSMDFHKSSSYLVTAS-DDESIRLYDVTAATCLKTINSK-----------------KYGVDLVCFTSHPTTVIYSSKNG   98 (276)
Q Consensus        37 v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~l~~~~~~~   98 (276)
                      ...+++.++++.|+++. .++.|+++|..++.. .++.+.                 -.....++++|++..++++... 
T Consensus       626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-  703 (1057)
T PLN02919        626 PQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-  703 (1057)
T ss_pred             CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-
Confidence            56789999888666554 457899999876653 332110                 1134679999965555554432 


Q ss_pred             CCCceEEEEccCCceeeeecc---------------cCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCceeeeeEe--
Q 023822           99 WDESLRLLSLHDNKYLRYFKG---------------HHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLR--  160 (276)
Q Consensus        99 ~d~~i~~~d~~~~~~~~~~~~---------------~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~--  160 (276)
                       ++.|++||..++... .+.+               .-.....++++|+++ ++++-+.++.|++||+.++.......  
T Consensus       704 -~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~  781 (1057)
T PLN02919        704 -QHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGD  781 (1057)
T ss_pred             -CCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecc
Confidence             889999998776432 1111               112356799999988 45555667899999998754321110  


Q ss_pred             ---------------------ecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeee---------eecCCCCCc
Q 023822          161 ---------------------VQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIF---------SVGGDISDA  209 (276)
Q Consensus       161 ---------------------~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~---------~~~~~~~~i  209 (276)
                                           ......++++++|.++++.. ++.|++||..++......-.         .....-...
T Consensus       782 ~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P  861 (1057)
T PLN02919        782 PTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEP  861 (1057)
T ss_pred             cccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCc
Confidence                                 11234788999998777766 89999999876432100000         001122357


Q ss_pred             eEEEECCCCcEEEEeecCCcEEEEECCCCcE
Q 023822          210 NVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL  240 (276)
Q Consensus       210 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  240 (276)
                      ..++++++|+++++-+.++.|++||+.+++.
T Consensus       862 ~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        862 AGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             eEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            7899999999888888899999999988765

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.34  E-value=1.5e-11  Score=104.10  Aligned_cols=145  Identities=14%  Similarity=0.115  Sum_probs=120.3

Q ss_pred             EcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceee-eeccc
Q 023822           42 FHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR-YFKGH  120 (276)
Q Consensus        42 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~-~~~~~  120 (276)
                      ++++.-++++|+.-+.|.+|+....+....+.+|++.+..+.++.++.++++.+.   |..+++|++++.+... ..-+|
T Consensus       141 ~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~Sd---DRsiRlW~i~s~~~~~~~~fgH  217 (967)
T KOG0974|consen  141 DSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSD---DRSIRLWPIDSREVLGCTGFGH  217 (967)
T ss_pred             ccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEec---CcceeeeecccccccCcccccc
Confidence            4556668899999999999998744433468899999999999999999999999   9999999999988766 67789


Q ss_pred             CcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE---eecCCCeeEecCCCcEEEEee-CCeEEEEecccC
Q 023822          121 HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL---RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKY  192 (276)
Q Consensus       121 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~  192 (276)
                      ...++.++|.|+  .+++++.|-+.++|+....+.. .+   ....+..++..+...+++++. |+.+++||+...
T Consensus       218 saRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  218 SARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             cceeEEEEeccc--eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            999999999998  8999999999999976654433 44   334566788888887776666 899999998653

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.33  E-value=6.5e-11  Score=90.49  Aligned_cols=156  Identities=13%  Similarity=0.132  Sum_probs=114.2

Q ss_pred             EEEEEEcCCCCEEEEeecCCeEEEEEccCCee----eeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCc
Q 023822           37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATC----LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK  112 (276)
Q Consensus        37 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~  112 (276)
                      ...+..++.+++||++..+....+++......    .... .-....+.+.|..+.....++...|....+.+|....+.
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~  143 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR  143 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence            34456678888999888887777777654332    2222 222345566676677776666653335556666655543


Q ss_pred             eeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE---eecCCCeeEecCCCcEEEEeeCCeEEEEec
Q 023822          113 YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL---RVQGRPAAAYDDQGLVFAVAFGGYIRMFDA  189 (276)
Q Consensus       113 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~  189 (276)
                       ...+.+|-..++.++|+||+++++++.+|..|++-.......+..+   |..-+..++.-++..++.++.|+++++||+
T Consensus       144 -~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~  222 (390)
T KOG3914|consen  144 -CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDI  222 (390)
T ss_pred             -cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEec
Confidence             3455689999999999999999999999999999888777666666   556677888888888888888999999999


Q ss_pred             ccCCC
Q 023822          190 RKYEK  194 (276)
Q Consensus       190 ~~~~~  194 (276)
                      ++++.
T Consensus       223 ~sgk~  227 (390)
T KOG3914|consen  223 TSGKL  227 (390)
T ss_pred             ccCCc
Confidence            99875

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=5.2e-10  Score=89.22  Aligned_cols=222  Identities=10%  Similarity=0.136  Sum_probs=151.0

Q ss_pred             EEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCC--------CCCceEEEEcc
Q 023822           38 SSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG--------WDESLRLLSLH  109 (276)
Q Consensus        38 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~--------~d~~i~~~d~~  109 (276)
                      +-+.|||-|.+|+|--..| |.+|--++...++.+. |. .|.-+.|||+.++|++-+..-        -...+.|||+.
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~  290 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA  290 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence            5689999999999998876 8899866666666654 33 589999999999999876421        13679999999


Q ss_pred             CCceeeeecccC--cce-EEEEeccCCCEEEEeeCCCeEEEEeccCceeee--eEeecCCCeeEecCCCcEEEEee---C
Q 023822          110 DNKYLRYFKGHH--DRV-VSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG--LLRVQGRPAAAYDDQGLVFAVAF---G  181 (276)
Q Consensus       110 ~~~~~~~~~~~~--~~i-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~---d  181 (276)
                      +|...+.+....  ..+ .-..|+.|++++|--.. .+|.||+..+..++.  .+...++....|+|.+.+||.=.   +
T Consensus       291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~  369 (698)
T KOG2314|consen  291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETN  369 (698)
T ss_pred             ccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccccc
Confidence            998887776522  222 34679999999887766 579999987754432  33677888999999988887654   1


Q ss_pred             ---CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeec-------CC---cEEEEECCCCcEE-EEeecC
Q 023822          182 ---GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM-------EG---HIHVLDSFRGTLL-STYNVK  247 (276)
Q Consensus       182 ---~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-------dg---~i~i~d~~~~~~~-~~~~~~  247 (276)
                         ..+.+-.+.+.+.    +....-+.-.=..+.|-.+|.+|+.--.       .|   .+.|+.++..... ....  
T Consensus       370 ~~parvtL~evPs~~~----iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve--  443 (698)
T KOG2314|consen  370 NIPARVTLMEVPSKRE----IRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE--  443 (698)
T ss_pred             CCcceEEEEecCccce----eeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee--
Confidence               3445555444332    2222222222234678888998876321       11   3556666554432 2333  


Q ss_pred             CCCCCceEEEEECCCCcEEEEecC
Q 023822          248 PVSRNSTLEASFSPEGMFVISGRV  271 (276)
Q Consensus       248 ~~~~~~v~~~~~s~~g~~l~~~~~  271 (276)
                        ....|...+|-|.|..+++-+.
T Consensus       444 --lke~vi~FaWEP~gdkF~vi~g  465 (698)
T KOG2314|consen  444 --LKESVIAFAWEPHGDKFAVISG  465 (698)
T ss_pred             --cchheeeeeeccCCCeEEEEEc
Confidence              5678999999999987766543

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.31  E-value=2.8e-10  Score=85.57  Aligned_cols=166  Identities=16%  Similarity=0.262  Sum_probs=113.5

Q ss_pred             HhhccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCC
Q 023822           20 ILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW   99 (276)
Q Consensus        20 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~   99 (276)
                      ...++...+....|..+|..+-|+....++++.+.|..+.---.+.+..+..+... ....++.+.-.  +...+..   
T Consensus       100 dfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~-~~~t~~~~d~~--~~fvGd~---  173 (404)
T KOG1409|consen  100 DFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE-TPASALQFDAL--YAFVGDH---  173 (404)
T ss_pred             hhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee-ccCCCCceeeE--EEEeccc---
Confidence            34667777888899999999999998899999999977654444444443332211 11122222111  4444544   


Q ss_pred             CCceEEEEc--cCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE---eecCCCeeEecCCC-
Q 023822          100 DESLRLLSL--HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL---RVQGRPAAAYDDQG-  173 (276)
Q Consensus       100 d~~i~~~d~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~-  173 (276)
                      .|.|....+  ..-.++.++.+|.+.+.+++|.|....|.+|..|..+.+||+...+-+...   +.+.+..+..-+-- 
T Consensus       174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~  253 (404)
T KOG1409|consen  174 SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTR  253 (404)
T ss_pred             ccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhe
Confidence            555555544  444667889999999999999999999999999999999999765443322   44555555555544 


Q ss_pred             cEEEEeeCCeEEEEeccc
Q 023822          174 LVFAVAFGGYIRMFDARK  191 (276)
Q Consensus       174 ~~l~~~~d~~i~~~d~~~  191 (276)
                      ++++++.||.|.+|++..
T Consensus       254 ~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  254 QLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             eeeeccCCCeEEEEeccc
Confidence            455555599999999865

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.27  E-value=6.6e-12  Score=100.05  Aligned_cols=172  Identities=15%  Similarity=0.275  Sum_probs=128.2

Q ss_pred             eeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCC-------ceeeeecccCcceEEEEeccCCCEEEEeeC
Q 023822           69 LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN-------KYLRYFKGHHDRVVSLSLCSSKDCFISGSL  141 (276)
Q Consensus        69 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  141 (276)
                      +..+.+|...|..++--.+.+.+++++.   |++|++|.++..       .+..++..|+.+|.++.|..+-++++++  
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASk---DKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--  802 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASK---DKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--  802 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccC---CceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--
Confidence            4456788888888888888889999998   999999998642       3667889999999999999988877765  


Q ss_pred             CCeEEEEeccCceeeeeE----eecCCCeeEecC--CCcEEEEe-e-CCeEEEEecccCCCC-CeeeeeecCCCCCceEE
Q 023822          142 DRTVLLWDQRAEKCQGLL----RVQGRPAAAYDD--QGLVFAVA-F-GGYIRMFDARKYEKG-PFDIFSVGGDISDANVV  212 (276)
Q Consensus       142 d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~--~~~~l~~~-~-d~~i~~~d~~~~~~~-~~~~~~~~~~~~~i~~~  212 (276)
                      ||-|++||.--++.....    +......+..-+  +..++.++ + ..+++++|.+..+-. ...+-...+....+.++
T Consensus       803 D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~i  882 (1034)
T KOG4190|consen  803 DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAI  882 (1034)
T ss_pred             cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEE
Confidence            788999998777665544    112222222222  34444444 4 799999999985521 11122223445678899


Q ss_pred             EECCCCcEEEEeecCCcEEEEECCCCcEEEEee
Q 023822          213 KFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  245 (276)
Q Consensus       213 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  245 (276)
                      +..|.|+.++++-..|+|.+.|.++|+.+..++
T Consensus       883 aVa~~GN~lAa~LSnGci~~LDaR~G~vINswr  915 (1034)
T KOG4190|consen  883 AVADKGNKLAAALSNGCIAILDARNGKVINSWR  915 (1034)
T ss_pred             EeccCcchhhHHhcCCcEEEEecCCCceeccCC
Confidence            999999999999999999999999999887655

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.27  E-value=3.3e-08  Score=75.11  Aligned_cols=225  Identities=13%  Similarity=0.162  Sum_probs=152.5

Q ss_pred             EEEEEcC-CCCEEEEeecCC-eEEEEEccCCeeeeeeeeeeece--EEEEEeccCCeEEEeccC--CCCCceEEEEcc-C
Q 023822           38 SSMDFHK-SSSYLVTASDDE-SIRLYDVTAATCLKTINSKKYGV--DLVCFTSHPTTVIYSSKN--GWDESLRLLSLH-D  110 (276)
Q Consensus        38 ~~~~~~~-~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~~--~~d~~i~~~d~~-~  110 (276)
                      ..++.+| ....++.+-.-| ...+||..+++....+....+.-  -.-.|++++++|++.-.+  ...|.|-|||.. +
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~   87 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG   87 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence            4678888 556667776666 46789999999887775443321  246899999999886431  127899999998 5


Q ss_pred             CceeeeecccCcceEEEEeccCCCEEEEee------------------CCCeEEEEeccCceeeeeE------eecCCCe
Q 023822          111 NKYLRYFKGHHDRVVSLSLCSSKDCFISGS------------------LDRTVLLWDQRAEKCQGLL------RVQGRPA  166 (276)
Q Consensus       111 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------------------~d~~i~iwd~~~~~~~~~~------~~~~~~~  166 (276)
                      -+.+.++..|.-....+.+.||++.|+++-                  .+.++.+.|.++++.+...      +...++.
T Consensus        88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH  167 (305)
T PF07433_consen   88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH  167 (305)
T ss_pred             cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence            566777877776677888999997776653                  2335666677777766553      3335778


Q ss_pred             eEecCCCcEEEEee-CC-------eEEEEecccCCCCCeeeeee-----cCCCCCceEEEECCCCcEEEEee-cCCcEEE
Q 023822          167 AAYDDQGLVFAVAF-GG-------YIRMFDARKYEKGPFDIFSV-----GGDISDANVVKFSNDGRLMLLTT-MEGHIHV  232 (276)
Q Consensus       167 ~~~~~~~~~l~~~~-d~-------~i~~~d~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i  232 (276)
                      +++.++|..+.+.. .+       -+.+++....    ......     ..-...+-+|++++++.++++.+ ..+.+.+
T Consensus       168 La~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~----~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~  243 (305)
T PF07433_consen  168 LAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA----LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV  243 (305)
T ss_pred             EEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc----ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence            99999998877765 22       2333333221    111111     12335788999999998886666 5678999


Q ss_pred             EECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCC
Q 023822          233 LDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVS  272 (276)
Q Consensus       233 ~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  272 (276)
                      ||..+++.+.....     ..+..++-.+++ ++++.+.-
T Consensus       244 ~d~~tg~~~~~~~l-----~D~cGva~~~~~-f~~ssG~G  277 (305)
T PF07433_consen  244 WDAATGRLLGSVPL-----PDACGVAPTDDG-FLVSSGQG  277 (305)
T ss_pred             EECCCCCEeecccc-----CceeeeeecCCc-eEEeCCCc
Confidence            99999999887762     345667776766 66655543

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.26  E-value=4.2e-09  Score=85.36  Aligned_cols=213  Identities=12%  Similarity=0.089  Sum_probs=126.7

Q ss_pred             CCEEEEeecCCeEEEEEccCCeeeeeeeeeeece-----EEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeeccc
Q 023822           46 SSYLVTASDDESIRLYDVTAATCLKTINSKKYGV-----DLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH  120 (276)
Q Consensus        46 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~  120 (276)
                      +..++.++.++.+..||.++|+.+..+.......     .....  .+..++.+..   ++.+..+|.++++.+......
T Consensus       145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~---~g~v~ald~~tG~~~W~~~~~  219 (377)
T TIGR03300       145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFA---GGKLVALDLQTGQPLWEQRVA  219 (377)
T ss_pred             CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECC---CCEEEEEEccCCCEeeeeccc
Confidence            3455666677888888888877666554322111     01111  1245666665   889999999999876553311


Q ss_pred             Cc----c---eEEEEecc--CCCEEEEeeCCCeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEeeCCeEEEEeccc
Q 023822          121 HD----R---VVSLSLCS--SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK  191 (276)
Q Consensus       121 ~~----~---i~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~  191 (276)
                      ..    .   ...+.-+|  .+..++.++.+|.++.||.++++..-............ .++++++...+|.+..+|..+
T Consensus       220 ~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~~-~~~~vyv~~~~G~l~~~d~~t  298 (377)
T TIGR03300       220 LPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPAV-DDNRLYVTDADGVVVALDRRS  298 (377)
T ss_pred             cCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCceE-eCCEEEEECCCCeEEEEECCC
Confidence            00    0   00010111  34577888889999999999887665443222222222 245666666689999999987


Q ss_pred             CCCCCeeeeeecCC-CCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceE-EEEECCCCcEEEEe
Q 023822          192 YEKGPFDIFSVGGD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTL-EASFSPEGMFVISG  269 (276)
Q Consensus       192 ~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~-~~~~s~~g~~l~~~  269 (276)
                      ++.    ....... .....+...  .+..+++++.+|.|+++|..+|+.+..+..   +...+. +..+ .++ .|+.+
T Consensus       299 G~~----~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~---~~~~~~~sp~~-~~~-~l~v~  367 (377)
T TIGR03300       299 GSE----LWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKT---DGSGIASPPVV-VGD-GLLVQ  367 (377)
T ss_pred             CcE----EEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc---CCCccccCCEE-ECC-EEEEE
Confidence            653    2222111 111122222  356788999999999999999999988873   332322 2222 233 47788


Q ss_pred             cCCCCC
Q 023822          270 RVSPFS  275 (276)
Q Consensus       270 ~~dg~v  275 (276)
                      +.||.+
T Consensus       368 ~~dG~l  373 (377)
T TIGR03300       368 TRDGDL  373 (377)
T ss_pred             eCCceE
Confidence            888864

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.26  E-value=4.6e-09  Score=83.04  Aligned_cols=223  Identities=12%  Similarity=0.097  Sum_probs=152.3

Q ss_pred             CcEEEEEEcCCCCEEEEeecCC---------------eEEEEEccCCeeeeeeeeeeec--eE-EEEEeccCCeEEEecc
Q 023822           35 GRISSMDFHKSSSYLVTASDDE---------------SIRLYDVTAATCLKTINSKKYG--VD-LVCFTSHPTTVIYSSK   96 (276)
Q Consensus        35 ~~v~~~~~~~~~~~l~~~~~d~---------------~i~iwd~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~l~~~~~   96 (276)
                      ..|..+.|+|++++|.+-+..+               .+.+||..+|..+..+.....+  .+ -+.|+.+.++++-.. 
T Consensus        72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-  150 (561)
T COG5354          72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-  150 (561)
T ss_pred             CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-
Confidence            4588899999999999876433               4899999999999988766555  44 788998988877664 


Q ss_pred             CCCCCceEEEEccCCcee-eeecc-cCcceEEEEeccCCC--EEEE-----eeCCCeEEEEeccCceeeeeE--eecCCC
Q 023822           97 NGWDESLRLLSLHDNKYL-RYFKG-HHDRVVSLSLCSSKD--CFIS-----GSLDRTVLLWDQRAEKCQGLL--RVQGRP  165 (276)
Q Consensus        97 ~~~d~~i~~~d~~~~~~~-~~~~~-~~~~i~~~~~~~~~~--~l~~-----~~~d~~i~iwd~~~~~~~~~~--~~~~~~  165 (276)
                         ...++++++ +.... ..+.. ....|....|+|.++  .|+.     ...++++++|.+.....+...  ..-...
T Consensus       151 ---~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~  226 (561)
T COG5354         151 ---GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGV  226 (561)
T ss_pred             ---cCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeeccc
Confidence               678999997 33221 11111 135678888998644  3443     345789999999877666554  333345


Q ss_pred             eeEecCCCcEEEEee------------CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEe--ecCCcEE
Q 023822          166 AAAYDDQGLVFAVAF------------GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLT--TMEGHIH  231 (276)
Q Consensus       166 ~~~~~~~~~~l~~~~------------d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~i~  231 (276)
                      .+.|.+.|.++.+-.            +.++++++++....    ... .....+|...+|.|.++.+++.  -.+..+.
T Consensus       227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i----~V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s  301 (561)
T COG5354         227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI----PVE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVS  301 (561)
T ss_pred             EEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc----cee-ccccccceeeeecccCCceeEEeccccccee
Confidence            788889887665422            35688888874332    111 1446789999999988776654  4678899


Q ss_pred             EEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCC
Q 023822          232 VLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       232 i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  273 (276)
                      ++|++.. +...+     ....=+.+.|+|.+++++.++-|.
T Consensus       302 ~~~lr~N-l~~~~-----Pe~~rNT~~fsp~~r~il~agF~n  337 (561)
T COG5354         302 VFDLRGN-LRFYF-----PEQKRNTIFFSPHERYILFAGFDN  337 (561)
T ss_pred             ecccccc-eEEec-----CCcccccccccCcccEEEEecCCc
Confidence            9998655 33322     234444567788887777766554

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.26  E-value=6.1e-11  Score=92.83  Aligned_cols=205  Identities=10%  Similarity=0.134  Sum_probs=146.9

Q ss_pred             ceeeccCCCcEEEEEEcCCC-CEEEEeecCCeEEEEEccCCeeeeeee---eeee---ceEEEEEeccCC-eEEEeccCC
Q 023822           27 GMSFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTIN---SKKY---GVDLVCFTSHPT-TVIYSSKNG   98 (276)
Q Consensus        27 ~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~---~v~~~~~~~~~~-~l~~~~~~~   98 (276)
                      ...+..|.++|.-++.-|+. .-|.+++.|+.+.-+|+..+.+...+.   .+..   ....++..|.+. .+++++.  
T Consensus       225 t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~--  302 (559)
T KOG1334|consen  225 TKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGS--  302 (559)
T ss_pred             ceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCCh--
Confidence            55667899999999999954 568899999999999988765443332   2222   567888888766 6777777  


Q ss_pred             CCCceEEEEccCCc------eeeeec------ccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCce------------
Q 023822           99 WDESLRLLSLHDNK------YLRYFK------GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK------------  154 (276)
Q Consensus        99 ~d~~i~~~d~~~~~------~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~------------  154 (276)
                       |..+++||.+.-.      .+..+.      ...-.|++++|+.++.-|+++-.|-.|+++.-..+.            
T Consensus       303 -dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~  381 (559)
T KOG1334|consen  303 -DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQ  381 (559)
T ss_pred             -hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhh
Confidence             9999999976432      122222      223469999999877777777778889998533211            


Q ss_pred             eeee-Eeec----CCCee-EecCCCcEEEEeeC-CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecC
Q 023822          155 CQGL-LRVQ----GRPAA-AYDDQGLVFAVAFG-GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME  227 (276)
Q Consensus       155 ~~~~-~~~~----~~~~~-~~~~~~~~l~~~~d-~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  227 (276)
                      ..+. +..+    .+..+ .|-|...++++|+| |.|.+|+-.+.+.    +..+.+...-|+|+.=+|--..||+++-|
T Consensus       382 ~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ei----i~~MegDr~VVNCLEpHP~~PvLAsSGid  457 (559)
T KOG1334|consen  382 YVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEI----IRFMEGDRHVVNCLEPHPHLPVLASSGID  457 (559)
T ss_pred             ccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHH----HHHhhcccceEeccCCCCCCchhhccCCc
Confidence            1111 2111    13333 45688899999997 9999999888664    44455555689999999999999999999


Q ss_pred             CcEEEEECCCC
Q 023822          228 GHIHVLDSFRG  238 (276)
Q Consensus       228 g~i~i~d~~~~  238 (276)
                      ..|+||-..+.
T Consensus       458 ~DVKIWTP~~~  468 (559)
T KOG1334|consen  458 HDVKIWTPLTA  468 (559)
T ss_pred             cceeeecCCcc
Confidence            99999986443

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.25  E-value=2.4e-08  Score=73.78  Aligned_cols=202  Identities=12%  Similarity=0.146  Sum_probs=132.7

Q ss_pred             EEEcCCCCEEEEeecCCeEEEEEccCC--eeeee---eeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCcee
Q 023822           40 MDFHKSSSYLVTASDDESIRLYDVTAA--TCLKT---INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL  114 (276)
Q Consensus        40 ~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~  114 (276)
                      ++.+.+|+.||.- .|..|.|-..++.  ..+..   -+.....-..++|+||+..|+.+..   .|+|+++|+.... +
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S---~G~i~vfdl~g~~-l   77 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAES---TGTIRVFDLMGSE-L   77 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcC---CCeEEEEecccce-e
Confidence            5667889888765 6677877765532  12222   2233345778999999999999998   9999999987533 3


Q ss_pred             eeecc-------cCcceEEEEeccCC------CEEEEeeCCCeEEEEeccC-----ceeeeeE-----eecCCCeeEecC
Q 023822          115 RYFKG-------HHDRVVSLSLCSSK------DCFISGSLDRTVLLWDQRA-----EKCQGLL-----RVQGRPAAAYDD  171 (276)
Q Consensus       115 ~~~~~-------~~~~i~~~~~~~~~------~~l~~~~~d~~i~iwd~~~-----~~~~~~~-----~~~~~~~~~~~~  171 (276)
                      ..+..       -...|..|.|.+..      ..|++-..+|.++-|-+..     .+....+     ...++..+.++|
T Consensus        78 f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p  157 (282)
T PF15492_consen   78 FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP  157 (282)
T ss_pred             EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC
Confidence            33322       22456777775422      2566777788887776532     2233333     345788999999


Q ss_pred             CCcEEEEee--C-C---------eEEEEecccCCCC------------------------Ceeeeee-cCCCCCceEEEE
Q 023822          172 QGLVFAVAF--G-G---------YIRMFDARKYEKG------------------------PFDIFSV-GGDISDANVVKF  214 (276)
Q Consensus       172 ~~~~l~~~~--d-~---------~i~~~d~~~~~~~------------------------~~~~~~~-~~~~~~i~~~~~  214 (276)
                      ..++|.+++  . .         -+..|.+-+...-                        ....+.. ......|..+..
T Consensus       158 ~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSl  237 (282)
T PF15492_consen  158 KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSL  237 (282)
T ss_pred             CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEE
Confidence            987776665  1 1         3556655332210                        0001111 123456888999


Q ss_pred             CCCCcEEEEeecCCcEEEEECCCCcEEEEeec
Q 023822          215 SNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV  246 (276)
Q Consensus       215 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  246 (276)
                      ||||+.||+...+|.|.+|++.+-++......
T Consensus       238 SPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~  269 (282)
T PF15492_consen  238 SPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ  269 (282)
T ss_pred             CCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence            99999999999999999999999888887763

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.24  E-value=1.7e-09  Score=78.86  Aligned_cols=206  Identities=10%  Similarity=-0.015  Sum_probs=131.9

Q ss_pred             ecCCeEEEEEccCCe--eeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCcee-eeecccCcceEEEEe
Q 023822           53 SDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL-RYFKGHHDRVVSLSL  129 (276)
Q Consensus        53 ~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~i~~~~~  129 (276)
                      +....+.+|++.+..  .++.+++-.  ..-..+.....+|+.++.   .|...+|...+.+.. +....|...|.-+.=
T Consensus        49 ~~t~sv~i~~~y~N~~~iv~~y~g~~--F~p~s~~~kc~~la~gG~---~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r  123 (344)
T KOG4532|consen   49 SKTISVPINSHYSNPKGIVEFYTGMT--FTPGSFINKCVTLADGGA---SGQFDLFACNTNDGHLYQCDVSNNDVTLVKR  123 (344)
T ss_pred             cceeeeEeccccCCchhhEEeeeccc--ccchHhhccccEEEeccc---cceeeeecccCcccceeeecccccchhhhhh
Confidence            344567788876543  222222211  111222234567888877   899999998866543 233334443322111


Q ss_pred             cc-CCCEEEEeeCCCeEEEEeccCceeeeeEeecC--CCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCC
Q 023822          130 CS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGD  205 (276)
Q Consensus       130 ~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~  205 (276)
                      .- ..-.+..++.|.++++.++..+......+...  ...++++++++++++-. ...|..|.+......... ......
T Consensus       124 ~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~-~~~a~t  202 (344)
T KOG4532|consen  124 YCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN-IYEAPT  202 (344)
T ss_pred             hcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeee-eEeccc
Confidence            11 12246677888889988887666555554443  67899999999998877 488999998764432222 122333


Q ss_pred             CCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEee--cCCCCCCceEEEEECCCCc
Q 023822          206 ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN--VKPVSRNSTLEASFSPEGM  264 (276)
Q Consensus       206 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~v~~~~~s~~g~  264 (276)
                      ...--+..|+.....+|++..||++.|||++.........  ..+.|.+.+..+.|++.|.
T Consensus       203 ~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~  263 (344)
T KOG4532|consen  203 SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL  263 (344)
T ss_pred             CCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCc
Confidence            3345678899999999999999999999998765544332  2235889999999998663

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.20  E-value=2.4e-10  Score=94.11  Aligned_cols=222  Identities=18%  Similarity=0.260  Sum_probs=154.9

Q ss_pred             CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCC-eeeeeee-eeeeceEEEEEeccC--CeEEEeccCCCCCceEEEEcc
Q 023822           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAA-TCLKTIN-SKKYGVDLVCFTSHP--TTVIYSSKNGWDESLRLLSLH  109 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~-~~~~~v~~~~~~~~~--~~l~~~~~~~~d~~i~~~d~~  109 (276)
                      .+++.++..+|.|+-+|.++.-| +.+-|+... .+.+.+. ...-.|-...|+|..  .+-++...   ...-.+|++.
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts---~qkaiiwnlA   99 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTS---NQKAIIWNLA   99 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecC---cchhhhhhhh
Confidence            56788899999999999998877 666777643 2222221 112346677888754  34444444   6667788875


Q ss_pred             CC---ceeeeecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCceee-eeE--eecCCCeeEecC-CCcEEEEeeC
Q 023822          110 DN---KYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQ-GLL--RVQGRPAAAYDD-QGLVFAVAFG  181 (276)
Q Consensus       110 ~~---~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~-~~~--~~~~~~~~~~~~-~~~~l~~~~d  181 (276)
                      ..   .....+-+|...|+.+.|+|+.. .+++++.|-.+..||+++.... ..+  -......+.|+- ++..++.+..
T Consensus       100 ~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg  179 (1081)
T KOG0309|consen  100 KSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHG  179 (1081)
T ss_pred             cCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccC
Confidence            33   33445678999999999999765 8999999999999999987533 222  344567888886 4567777778


Q ss_pred             CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCC-CcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEEC
Q 023822          182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS  260 (276)
Q Consensus       182 ~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s  260 (276)
                      +.|++||.+.+..+   ...+.+|...++.+.|..- ...+.+.+.|++|++||............  ....+|..-++.
T Consensus       180 ~~i~vwd~r~gs~p---l~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v--tt~~piw~~r~~  254 (1081)
T KOG0309|consen  180 NDIFVWDLRKGSTP---LCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV--TTNFPIWRGRYL  254 (1081)
T ss_pred             CceEEEeccCCCcc---eEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec--cccCcceecccc
Confidence            99999999986643   5556668888888888753 34578899999999999765433222211  245667777777


Q ss_pred             CCCc
Q 023822          261 PEGM  264 (276)
Q Consensus       261 ~~g~  264 (276)
                      |-|+
T Consensus       255 Pfg~  258 (1081)
T KOG0309|consen  255 PFGE  258 (1081)
T ss_pred             ccCc
Confidence            7554

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.19  E-value=2e-08  Score=76.09  Aligned_cols=186  Identities=19%  Similarity=0.157  Sum_probs=121.5

Q ss_pred             CCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeee-cccC--
Q 023822           45 SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF-KGHH--  121 (276)
Q Consensus        45 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~-~~~~--  121 (276)
                      ++..+++++.++.+..||..+|+.+..+.... ++.... ...+..++++..   ++.+..+|..+++.+... ....  
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~-~~~~~~-~~~~~~v~v~~~---~~~l~~~d~~tG~~~W~~~~~~~~~  109 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPG-PISGAP-VVDGGRVYVGTS---DGSLYALDAKTGKVLWSIYLTSSPP  109 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSS-CGGSGE-EEETTEEEEEET---TSEEEEEETTTSCEEEEEEE-SSCT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeeccc-ccccee-eecccccccccc---eeeeEecccCCcceeeeeccccccc
Confidence            45677777899999999999999887776522 222222 235556666665   889999999999998874 3221  


Q ss_pred             -cceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecCCC------------eeEecCCCcEEEEeeCCeEEEEe
Q 023822          122 -DRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP------------AAAYDDQGLVFAVAFGGYIRMFD  188 (276)
Q Consensus       122 -~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~------------~~~~~~~~~~l~~~~d~~i~~~d  188 (276)
                       .....+.....++.++.+..++.|..+|+++++.+-........            .-....++.++++..++.+..+|
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d  189 (238)
T PF13360_consen  110 AGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVD  189 (238)
T ss_dssp             CSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEE
T ss_pred             cccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEE
Confidence             11122233334778888888999999999999987776442211            12222345666666677544449


Q ss_pred             cccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEE
Q 023822          189 ARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS  242 (276)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  242 (276)
                      .++++.    .....  ...+..+ ..+.+..|+.++.++.|..||+++|+.+-
T Consensus       190 ~~tg~~----~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W  236 (238)
T PF13360_consen  190 LATGEK----LWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVW  236 (238)
T ss_dssp             TTTTEE----EEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred             CCCCCE----EEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence            888663    22222  1222221 34567778888799999999999998764

...

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.18  E-value=2.1e-08  Score=81.27  Aligned_cols=211  Identities=15%  Similarity=0.152  Sum_probs=125.4

Q ss_pred             CCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcce
Q 023822           45 SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRV  124 (276)
Q Consensus        45 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i  124 (276)
                      ++..++.++.++.+..+|..+|+.+....... .+.+.... .+..++.+..   ++.|..||.++++.+..+......+
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v-~~~~v~v~~~---~g~l~a~d~~tG~~~W~~~~~~~~~  178 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV-ANGLVVVRTN---DGRLTALDAATGERLWTYSRVTPAL  178 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE-ECCEEEEECC---CCeEEEEEcCCCceeeEEccCCCce
Confidence            34567777788888888888888766554322 12111111 2456666665   8999999999998877765432211


Q ss_pred             E-----EEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecC------------C-CeeEecCCCcEEEEeeCCeEEE
Q 023822          125 V-----SLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG------------R-PAAAYDDQGLVFAVAFGGYIRM  186 (276)
Q Consensus       125 ~-----~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------------~-~~~~~~~~~~~l~~~~d~~i~~  186 (276)
                      .     +...  .+..++.+..++.+..+|.++++.+-......            + ....+ .++.+++.+.++.++.
T Consensus       179 ~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g~l~a  255 (377)
T TIGR03300       179 TLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-DGGQVYAVSYQGRVAA  255 (377)
T ss_pred             eecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-ECCEEEEEEcCCEEEE
Confidence            1     1111  12467788888999999999887654332110            0 01111 2456666666999999


Q ss_pred             EecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEE
Q 023822          187 FDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFV  266 (276)
Q Consensus       187 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  266 (276)
                      ||.++++.    ......  .......  ..+..+++++.+|.+..+|..+|+.+-.....  ......+...  .+..|
T Consensus       256 ~d~~tG~~----~W~~~~--~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~--~~~~~ssp~i--~g~~l  323 (377)
T TIGR03300       256 LDLRSGRV----LWKRDA--SSYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDEL--KYRQLTAPAV--VGGYL  323 (377)
T ss_pred             EECCCCcE----EEeecc--CCccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccc--cCCccccCEE--ECCEE
Confidence            99988653    232221  1111222  24567888889999999999999887655311  1111111112  34567


Q ss_pred             EEecCCCCC
Q 023822          267 ISGRVSPFS  275 (276)
Q Consensus       267 ~~~~~dg~v  275 (276)
                      ++++.+|.+
T Consensus       324 ~~~~~~G~l  332 (377)
T TIGR03300       324 VVGDFEGYL  332 (377)
T ss_pred             EEEeCCCEE
Confidence            777777653

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.17  E-value=1.3e-10  Score=61.10  Aligned_cols=38  Identities=26%  Similarity=0.535  Sum_probs=36.0

Q ss_pred             ccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEE
Q 023822           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYD   62 (276)
Q Consensus        25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd   62 (276)
                      ++..++++|.++|++++|+|++++|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            46788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.17  E-value=2e-10  Score=102.68  Aligned_cols=179  Identities=13%  Similarity=0.148  Sum_probs=132.5

Q ss_pred             eeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeec-ccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCc
Q 023822           75 KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFK-GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE  153 (276)
Q Consensus        75 ~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  153 (276)
                      +-..|.++.-+|...+.++++.   ||.+++|....++.+..++ ..+..|+.+.|+.+|+.+..+..||.+.+|... .
T Consensus      2207 ~v~~v~r~~sHp~~~~Yltgs~---dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQ---DGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred             ccCceeeecCCCCCceEEecCC---CceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-C
Confidence            3346888888899999999998   9999999998888776664 234789999999999999999999999999987 3


Q ss_pred             eeeeeE--eecCCCeeEecCCCcEEEEee---CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCC
Q 023822          154 KCQGLL--RVQGRPAAAYDDQGLVFAVAF---GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG  228 (276)
Q Consensus       154 ~~~~~~--~~~~~~~~~~~~~~~~l~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  228 (276)
                      ++....  +......+.|-.. .++..+.   ++.+.+||.......   ......|...++++++-|..+.|++|+.+|
T Consensus      2283 k~~~s~qchnk~~~Df~Fi~s-~~~tag~s~d~~n~~lwDtl~~~~~---s~v~~~H~~gaT~l~~~P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIGS-LLATAGRSSDNRNVCLWDTLLPPMN---SLVHTCHDGGATVLAYAPKHQLLISGGRKG 2358 (2439)
T ss_pred             cceeccccCCccccceeeeeh-hhhccccCCCCCcccchhcccCccc---ceeeeecCCCceEEEEcCcceEEEecCCcC
Confidence            333333  3333444555442 2222222   589999998654322   222267889999999999999999999999


Q ss_pred             cEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCC
Q 023822          229 HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPF  274 (276)
Q Consensus       229 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~  274 (276)
                      .|++||++..++++.++   .         +. ...++++|+..|+
T Consensus      2359 ~v~l~D~rqrql~h~~~---~---------~~-~~~~f~~~ss~g~ 2391 (2439)
T KOG1064|consen 2359 EVCLFDIRQRQLRHTFQ---A---------LD-TREYFVTGSSEGN 2391 (2439)
T ss_pred             cEEEeehHHHHHHHHhh---h---------hh-hhheeeccCcccc
Confidence            99999999888877776   1         22 3445666665554

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.15  E-value=3.6e-10  Score=85.08  Aligned_cols=159  Identities=13%  Similarity=0.192  Sum_probs=114.4

Q ss_pred             CCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCc-----eeeeeE-eecCCCeeEecC-C
Q 023822          100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE-----KCQGLL-RVQGRPAAAYDD-Q  172 (276)
Q Consensus       100 d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-----~~~~~~-~~~~~~~~~~~~-~  172 (276)
                      +..+.+-|++++-. +.+. ..+.|.++.|+..++++..|+++|.|..+|+|..     .+...+ |...+.++..-. +
T Consensus       233 sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s  310 (425)
T KOG2695|consen  233 SQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFS  310 (425)
T ss_pred             cceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccc
Confidence            78888999888743 2333 6778999999998999999999999999999965     233333 777777776655 4


Q ss_pred             CcEEE-EeeCCeEEEEecccCCCCCeeeeeecCCCCCc--eEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCC-
Q 023822          173 GLVFA-VAFGGYIRMFDARKYEKGPFDIFSVGGDISDA--NVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP-  248 (276)
Q Consensus       173 ~~~l~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-  248 (276)
                      +..|. .+.+|.|.+||.+.-+... .+...++|...-  .-+...+....+++++.|...|||.++.|.++.++.... 
T Consensus       311 ~q~LmaS~M~gkikLyD~R~~K~~~-~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s  389 (425)
T KOG2695|consen  311 QQKLMASDMTGKIKLYDLRATKCKK-SVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYS  389 (425)
T ss_pred             cceEeeccCcCceeEeeehhhhccc-ceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCc
Confidence            55554 4459999999999765432 344555664332  223455667788899999999999999999999886422 


Q ss_pred             CCCCceEEEEECC
Q 023822          249 VSRNSTLEASFSP  261 (276)
Q Consensus       249 ~~~~~v~~~~~s~  261 (276)
                      ..+..+.+++|..
T Consensus       390 ~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  390 ASEVDIPSVAFDS  402 (425)
T ss_pred             cccccccceehhc
Confidence            2233566777753

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.14  E-value=7.4e-08  Score=85.48  Aligned_cols=237  Identities=13%  Similarity=0.181  Sum_probs=150.5

Q ss_pred             CCCcEEEEEEcCCCCEEEEeec------CCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEE
Q 023822           33 YNGRISSMDFHKSSSYLVTASD------DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL  106 (276)
Q Consensus        33 h~~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~  106 (276)
                      +...-..++|-.||.++|+.+-      -+.++||+-+ |....+-+.-.+--..++|.|.|+.+++.........|.+|
T Consensus       208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFf  286 (928)
T PF04762_consen  208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFF  286 (928)
T ss_pred             cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEE
Confidence            4455668999999999998874      2589999965 66555444444445678999999999988764435667777


Q ss_pred             EccCCc---eeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeee--eEe---ecCCCeeEecCCC--cEE
Q 023822          107 SLHDNK---YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG--LLR---VQGRPAAAYDDQG--LVF  176 (276)
Q Consensus       107 d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~---~~~~~~~~~~~~~--~~l  176 (276)
                      .-+.-+   ....+......|..+.|++++..||....|. |.+|-..+..-..  .+.   ......+.|+|..  ++.
T Consensus       287 ErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~  365 (928)
T PF04762_consen  287 ERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLH  365 (928)
T ss_pred             ecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEE
Confidence            743322   1112224566899999999999999977665 9999988765322  222   2234458898854  333


Q ss_pred             EEeeCCeEEEEecc----cCC----------------------------CCCeeeeeecCCCCCceEEEECCCCcEEEEe
Q 023822          177 AVAFGGYIRMFDAR----KYE----------------------------KGPFDIFSVGGDISDANVVKFSNDGRLMLLT  224 (276)
Q Consensus       177 ~~~~d~~i~~~d~~----~~~----------------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  224 (276)
                      +...++.+..++..    ...                            .+|...+.+ .-..+|.+++|++++..+++-
T Consensus       366 v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l-~~~~~v~~vaf~~~~~~~avl  444 (928)
T PF04762_consen  366 VLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYEL-ELPSPVNDVAFSPSNSRFAVL  444 (928)
T ss_pred             EEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEE-cCCCCcEEEEEeCCCCeEEEE
Confidence            43334655554432    110                            011111121 134689999999999889999


Q ss_pred             ecCCcEEEEECCCCcEE--------EEeec-------CCCCCCceEEEEECCCCcEEEEecCC
Q 023822          225 TMEGHIHVLDSFRGTLL--------STYNV-------KPVSRNSTLEASFSPEGMFVISGRVS  272 (276)
Q Consensus       225 ~~dg~i~i~d~~~~~~~--------~~~~~-------~~~~~~~v~~~~~s~~g~~l~~~~~d  272 (276)
                      ..||.|.+|........        ..+..       .......+..++|..+...++....+
T Consensus       445 ~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  507 (928)
T PF04762_consen  445 TSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSD  507 (928)
T ss_pred             ECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecC
Confidence            99999999985432211        11110       01134567888888887766665543

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.13  E-value=4.3e-10  Score=92.62  Aligned_cols=209  Identities=14%  Similarity=0.147  Sum_probs=142.8

Q ss_pred             cceeeccCCCcEEEEEEcCC-CCEEEEeecCCeEEEEEccCCe-eeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822           26 VGMSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTAAT-CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (276)
Q Consensus        26 ~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i  103 (276)
                      ....+.+|...|+.+-|+|. ...|++++.|-.+..||+.+.. ++..+..-......+.|+-....+++.+.   ...|
T Consensus       106 Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlassh---g~~i  182 (1081)
T KOG0309|consen  106 IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSH---GNDI  182 (1081)
T ss_pred             eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhcc---CCce
Confidence            34567899999999999984 4588999999999999998653 44445444556788999987777777776   7889


Q ss_pred             EEEEccCC-ceeeeecccCcceEEEEeccC-CCEEEEeeCCCeEEEEeccCceee--eeE-eecCCCeeEecCCCc--EE
Q 023822          104 RLLSLHDN-KYLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQ--GLL-RVQGRPAAAYDDQGL--VF  176 (276)
Q Consensus       104 ~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~--~~~-~~~~~~~~~~~~~~~--~l  176 (276)
                      .+||.+.+ .++..+++|...|+.++|+.- ...+.+++.|++|+.||.......  +.. ...++..-.+-|-|.  ++
T Consensus       183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~  262 (1081)
T KOG0309|consen  183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCI  262 (1081)
T ss_pred             EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEe
Confidence            99999876 567788999999999999753 336889999999999998754322  121 222233333333221  11


Q ss_pred             EEee-CCeEEEEecccCC------CCCeeeeeecCCCCCceEEEECCCC----------cEEEEeecCCcEEEEECCC
Q 023822          177 AVAF-GGYIRMFDARKYE------KGPFDIFSVGGDISDANVVKFSNDG----------RLMLLTTMEGHIHVLDSFR  237 (276)
Q Consensus       177 ~~~~-d~~i~~~d~~~~~------~~~~~~~~~~~~~~~i~~~~~~~~~----------~~l~~~~~dg~i~i~d~~~  237 (276)
                      .-.. +..+.+++.++..      ..+..++.+.+|...|....|-..+          -.|++-+.|..+++|-+.+
T Consensus       263 mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  263 MPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             ccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            1111 2233333332211      1233477788888887776665432          2589999999999998753

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.12  E-value=9.5e-08  Score=70.69  Aligned_cols=190  Identities=12%  Similarity=0.162  Sum_probs=119.4

Q ss_pred             EEEeccCCeEEEeccCCCCCceEEEEccCC--ceee---eecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceee
Q 023822           82 VCFTSHPTTVIYSSKNGWDESLRLLSLHDN--KYLR---YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ  156 (276)
Q Consensus        82 ~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~--~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  156 (276)
                      ++.+.+|+.|++..    |..|.+=..+..  ..+.   ..+.....-+.++|+||+.+||.+...|+|++||+......
T Consensus         3 ~~~~~~Gk~lAi~q----d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf   78 (282)
T PF15492_consen    3 LALSSDGKLLAILQ----DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF   78 (282)
T ss_pred             eeecCCCcEEEEEe----ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeE
Confidence            55667888887776    666666554432  1111   22223344578999999999999999999999998764332


Q ss_pred             eeEe---------ecCCCeeEecC-------CCcEEEEeeCCeEEEEecccCCC---CCeeeeeecC-CCCCceEEEECC
Q 023822          157 GLLR---------VQGRPAAAYDD-------QGLVFAVAFGGYIRMFDARKYEK---GPFDIFSVGG-DISDANVVKFSN  216 (276)
Q Consensus       157 ~~~~---------~~~~~~~~~~~-------~~~~l~~~~d~~i~~~d~~~~~~---~~~~~~~~~~-~~~~i~~~~~~~  216 (276)
                       .+.         ...+..+.|.+       ...+++...+|.++-|-+..+..   .....+.+.. ....|.++.++|
T Consensus        79 -~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p  157 (282)
T PF15492_consen   79 -VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP  157 (282)
T ss_pred             -EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC
Confidence             221         11233444433       22678888888888887643221   1222333333 467899999999


Q ss_pred             CCcEEEEeec----CC-------cEEEEECCCCcEEEE--------------------------eecCCCCCCceEEEEE
Q 023822          217 DGRLMLLTTM----EG-------HIHVLDSFRGTLLST--------------------------YNVKPVSRNSTLEASF  259 (276)
Q Consensus       217 ~~~~l~~~~~----dg-------~i~i~d~~~~~~~~~--------------------------~~~~~~~~~~v~~~~~  259 (276)
                      ..++|++|+.    ++       -+.-|.+-++.+-..                          +.........|..+..
T Consensus       158 ~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSl  237 (282)
T PF15492_consen  158 KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSL  237 (282)
T ss_pred             CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEE
Confidence            9888888763    11       256666543321111                          0000123567999999


Q ss_pred             CCCCcEEEEecCCCCCC
Q 023822          260 SPEGMFVISGRVSPFSS  276 (276)
Q Consensus       260 s~~g~~l~~~~~dg~vs  276 (276)
                      ||||+.||+...+|.+|
T Consensus       238 SPdg~~La~ih~sG~ls  254 (282)
T PF15492_consen  238 SPDGSLLACIHFSGSLS  254 (282)
T ss_pred             CCCCCEEEEEEcCCeEE
Confidence            99999999999998764

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.10  E-value=2.5e-09  Score=82.03  Aligned_cols=160  Identities=14%  Similarity=0.154  Sum_probs=108.3

Q ss_pred             ceEEEEEeccCCeEEEeccCCCCCceEEEEccCCce----eeeecccCcceEEEEeccCCCEEEEeeCC---CeEEEEec
Q 023822           78 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY----LRYFKGHHDRVVSLSLCSSKDCFISGSLD---RTVLLWDQ  150 (276)
Q Consensus        78 ~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~iwd~  150 (276)
                      ....+..++.++.++++..   +....+++......    .... .-...-+++.|..+......+..-   ..+.+|..
T Consensus        64 a~~~~~~s~~~~llAv~~~---~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~  139 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATS---SKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSA  139 (390)
T ss_pred             cccccccCCCceEEEEEeC---CCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence            3445666778888888876   77766777654432    1111 122333455555555544444444   44555555


Q ss_pred             cCceeeeeE-eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCC
Q 023822          151 RAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG  228 (276)
Q Consensus       151 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  228 (276)
                      ..+.+...+ |...+..++++||++++.++. |..|++-.......  +..+ .-+|..-|..++.-++ ..|+++|.|+
T Consensus       140 ~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~--Iesf-clGH~eFVS~isl~~~-~~LlS~sGD~  215 (390)
T KOG3914|consen  140 DSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFV--IESF-CLGHKEFVSTISLTDN-YLLLSGSGDK  215 (390)
T ss_pred             cccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccc--hhhh-ccccHhheeeeeeccC-ceeeecCCCC
Confidence            555555555 777788999999999999988 99999987654221  1111 2468888999998876 4589999999


Q ss_pred             cEEEEECCCCcEEEEee
Q 023822          229 HIHVLDSFRGTLLSTYN  245 (276)
Q Consensus       229 ~i~i~d~~~~~~~~~~~  245 (276)
                      +|++||+.+|+.+.++.
T Consensus       216 tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  216 TLRLWDITSGKLLDTCD  232 (390)
T ss_pred             cEEEEecccCCcccccc
Confidence            99999999999987765

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=2.4e-09  Score=83.42  Aligned_cols=235  Identities=14%  Similarity=0.156  Sum_probs=161.4

Q ss_pred             cCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccC--C-eeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEc
Q 023822           32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA--A-TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL  108 (276)
Q Consensus        32 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~  108 (276)
                      -|...|+.+.... .+++.+++.||.++.|.-..  + +.+..+..|-..+.+++.+-++..+.+....  |..++++|+
T Consensus         7 mhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~--Dhs~KvfDv   83 (558)
T KOG0882|consen    7 MHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDP--DHSVKVFDV   83 (558)
T ss_pred             cccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCc--ccceeEEEe
Confidence            3777787776654 47999999999999998543  1 3344556788889999999999888886542  899999999


Q ss_pred             cCCceeeeec--ccCcceEEEEeccCCC---EEE-EeeCCCeEEEEeccCceeee----eEeecCCCeeEecCCCcEEEE
Q 023822          109 HDNKYLRYFK--GHHDRVVSLSLCSSKD---CFI-SGSLDRTVLLWDQRAEKCQG----LLRVQGRPAAAYDDQGLVFAV  178 (276)
Q Consensus       109 ~~~~~~~~~~--~~~~~i~~~~~~~~~~---~l~-~~~~d~~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~  178 (276)
                      .+-..+.-++  ..++.+..  +...|.   .++ +.-.++.+.++|-+...+..    .++..++.++.+.+.+..+++
T Consensus        84 En~DminmiKL~~lPg~a~w--v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vS  161 (558)
T KOG0882|consen   84 ENFDMINMIKLVDLPGFAEW--VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVS  161 (558)
T ss_pred             eccchhhhcccccCCCceEE--ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceee
Confidence            8765443222  22222221  122231   333 33457899999977655332    237788889999999988887


Q ss_pred             ee-CCeEEEEeccc-CCCC----------CeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeec
Q 023822          179 AF-GGYIRMFDARK-YEKG----------PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV  246 (276)
Q Consensus       179 ~~-d~~i~~~d~~~-~~~~----------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  246 (276)
                      .. .|.|.-|.... .+.+          ...++.+........++.|+|+|..+.+-+.|..|++++.++|++++.+..
T Consensus       162 iD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE  241 (558)
T KOG0882|consen  162 IDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDE  241 (558)
T ss_pred             ccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhc
Confidence            77 79999998873 1111          111233334456788999999999999999999999999999988776542


Q ss_pred             CC-----------------------------CC-CCceEEEEECCCCcEEEEecC
Q 023822          247 KP-----------------------------VS-RNSTLEASFSPEGMFVISGRV  271 (276)
Q Consensus       247 ~~-----------------------------~~-~~~v~~~~~s~~g~~l~~~~~  271 (276)
                      ..                             .+ ...-+.+.|...|++|+.|+-
T Consensus       242 ~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~  296 (558)
T KOG0882|consen  242 VLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTI  296 (558)
T ss_pred             cchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecc
Confidence            11                             01 122355778888888887753

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.09  E-value=1.4e-07  Score=71.83  Aligned_cols=188  Identities=20%  Similarity=0.215  Sum_probs=129.9

Q ss_pred             ceeeccCCCcEEEEEEcCCCCEEEEee-----cCCeEEEEEcc-CCeeeeeeeeeeeceEEEEEeccCCeEEEeccC---
Q 023822           27 GMSFRDYNGRISSMDFHKSSSYLVTAS-----DDESIRLYDVT-AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN---   97 (276)
Q Consensus        27 ~~~~~~h~~~v~~~~~~~~~~~l~~~~-----~d~~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~---   97 (276)
                      -+.|.||      -.|++||++|++.-     ..|.|-|||.. +.+.+.++..+.-....+.+.|+++.|+++..+   
T Consensus        49 gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~T  122 (305)
T PF07433_consen   49 GRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIET  122 (305)
T ss_pred             CCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCcc
Confidence            3445566      68999999999864     35789999998 667888888887778889999999999887542   


Q ss_pred             ------------CCCCceEEEEccCCceeee--e--cccCcceEEEEeccCCCEEEEeeCCCe-------EEEEeccCce
Q 023822           98 ------------GWDESLRLLSLHDNKYLRY--F--KGHHDRVVSLSLCSSKDCFISGSLDRT-------VLLWDQRAEK  154 (276)
Q Consensus        98 ------------~~d~~i~~~d~~~~~~~~~--~--~~~~~~i~~~~~~~~~~~l~~~~~d~~-------i~iwd~~~~~  154 (276)
                                  ..+..+.+.|..+++.+..  +  ..|...|..+++.++|..++..-..|.       |.+++...  
T Consensus       123 hpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--  200 (305)
T PF07433_consen  123 HPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--  200 (305)
T ss_pred             CcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--
Confidence                        1245677778888887766  4  337788999999999876665554432       33443322  


Q ss_pred             eeeeEe---------ecCCCeeEecCCCcEEEEee--CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEE
Q 023822          155 CQGLLR---------VQGRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLL  223 (276)
Q Consensus       155 ~~~~~~---------~~~~~~~~~~~~~~~l~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  223 (276)
                      ....+.         .+.+-++++++++.++++++  .+.+.+||..+++.    +..  ..-..+..++-.+++ ++++
T Consensus       201 ~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~----~~~--~~l~D~cGva~~~~~-f~~s  273 (305)
T PF07433_consen  201 ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRL----LGS--VPLPDACGVAPTDDG-FLVS  273 (305)
T ss_pred             cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCE----eec--cccCceeeeeecCCc-eEEe
Confidence            222221         12345899999999888888  79999999988663    111  122356667777766 4554


Q ss_pred             eecCCcE
Q 023822          224 TTMEGHI  230 (276)
Q Consensus       224 ~~~dg~i  230 (276)
                      .+ .|.+
T Consensus       274 sG-~G~~  279 (305)
T PF07433_consen  274 SG-QGQL  279 (305)
T ss_pred             CC-CccE
Confidence            43 4443

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.05  E-value=8.4e-10  Score=57.92  Aligned_cols=38  Identities=34%  Similarity=0.660  Sum_probs=36.1

Q ss_pred             ceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEe
Q 023822          112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD  149 (276)
Q Consensus       112 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd  149 (276)
                      +++.++.+|...|.+++|+|++++|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            56788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.05  E-value=5.6e-08  Score=80.98  Aligned_cols=232  Identities=13%  Similarity=0.150  Sum_probs=160.0

Q ss_pred             cEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCC------------eEEEeccCCCCCce
Q 023822           36 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT------------TVIYSSKNGWDESL  103 (276)
Q Consensus        36 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~------------~l~~~~~~~~d~~i  103 (276)
                      .-.++.|+|.| ++|.|+. ..|.+-|..+-+.++.+..|...|+.+.|.|-..            .++++..   .|.|
T Consensus        17 N~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~---~GrI   91 (1062)
T KOG1912|consen   17 NRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADI---SGRI   91 (1062)
T ss_pred             cccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccc---cCcE
Confidence            35678999876 7777765 4788999999999999999999999999986421            3444444   8999


Q ss_pred             EEEEccCCceeeeecccCcceEEEEecc---CC-CEEEEeeCCCeEEEEeccCceeeeeEee--cCCCeeEecCC-C-cE
Q 023822          104 RLLSLHDNKYLRYFKGHHDRVVSLSLCS---SK-DCFISGSLDRTVLLWDQRAEKCQGLLRV--QGRPAAAYDDQ-G-LV  175 (276)
Q Consensus       104 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~---~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~-~-~~  175 (276)
                      .+||...+..+..+..|.+++..++|-+   +. ..|++-....++.+|+..+++..-....  ....++.++|- . ++
T Consensus        92 il~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~  171 (1062)
T KOG1912|consen   92 ILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHF  171 (1062)
T ss_pred             EEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceE
Confidence            9999999988888999999999999976   33 3666667778999999999887655522  22335677763 2 34


Q ss_pred             EEEeeCCeEEEEecccCCCC--CeeeeeecC-C----------------CCC---------ceEEEECCCCcEEEEeecC
Q 023822          176 FAVAFGGYIRMFDARKYEKG--PFDIFSVGG-D----------------ISD---------ANVVKFSNDGRLMLLTTME  227 (276)
Q Consensus       176 l~~~~d~~i~~~d~~~~~~~--~~~~~~~~~-~----------------~~~---------i~~~~~~~~~~~l~~~~~d  227 (276)
                      .+.+..|.+.+-+.-....+  +.+.+.+.. |                ...         ...++|+|.-+-++.....
T Consensus       172 ~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~p  251 (1062)
T KOG1912|consen  172 CVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFP  251 (1062)
T ss_pred             EEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEec
Confidence            44444677666664332211  111111111 0                000         1135778876666666677


Q ss_pred             CcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCC--cEEEEecCCCCC
Q 023822          228 GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG--MFVISGRVSPFS  275 (276)
Q Consensus       228 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~~~~dg~v  275 (276)
                      ..+.++|++-..++.....   ..+.+.-+.|-|++  ..|+..-.||-.
T Consensus       252 rellv~dle~~~~l~vvpi---er~~akfv~vlP~~~rd~LfclH~nG~l  298 (1062)
T KOG1912|consen  252 RELLVFDLEYECCLAVVPI---ERGGAKFVDVLPDPRRDALFCLHSNGRL  298 (1062)
T ss_pred             cceEEEcchhhceeEEEEe---ccCCcceeEeccCCCcceEEEEecCCeE
Confidence            8899999998888888874   34555556777766  468888888753

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.05  E-value=3.1e-08  Score=82.44  Aligned_cols=209  Identities=12%  Similarity=0.118  Sum_probs=148.1

Q ss_pred             hccccceeeccCCCcEEEEEEcCCC------------CEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEecc--
Q 023822           22 QSMEVGMSFRDYNGRISSMDFHKSS------------SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH--   87 (276)
Q Consensus        22 ~~~~~~~~~~~h~~~v~~~~~~~~~------------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~--   87 (276)
                      .+++.++.+..|+..|+.+.|.|..            -+||++...|.|.+||...+..+..+..+..++..++|-+.  
T Consensus        43 ~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd  122 (1062)
T KOG1912|consen   43 RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARD  122 (1062)
T ss_pred             hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccC
Confidence            3567778888999999999998731            15677788899999999999888899999999999999863  


Q ss_pred             -C-CeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEecc-CCCEEEEeeCCCeEEEEeccCc-------eeee
Q 023822           88 -P-TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAE-------KCQG  157 (276)
Q Consensus        88 -~-~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~-------~~~~  157 (276)
                       . ..++....   ...+.+|+..+|+....+........|+.+.| |.+.+...+..|.+.+-+.-..       +..+
T Consensus       123 ~Srd~LlaIh~---ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~q  199 (1062)
T KOG1912|consen  123 DSRDVLLAIHG---SSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQ  199 (1062)
T ss_pred             cchheeEEecC---CcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEE
Confidence             3 23444443   78999999999999888877677778899988 5566777777777777654311       1111


Q ss_pred             eE--eec----------------CC---------CeeEecCCC-cEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCc
Q 023822          158 LL--RVQ----------------GR---------PAAAYDDQG-LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDA  209 (276)
Q Consensus       158 ~~--~~~----------------~~---------~~~~~~~~~-~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i  209 (276)
                      ..  +..                ..         ..++|+|.- +++.......+.++|++-...    .....-..+.+
T Consensus       200 I~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~----l~vvpier~~a  275 (1062)
T KOG1912|consen  200 ITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECC----LAVVPIERGGA  275 (1062)
T ss_pred             EecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhce----eEEEEeccCCc
Confidence            11  000                00         034667765 455666689999999986443    33333334455


Q ss_pred             eEEEECCCC--cEEEEeecCCcEEEEECCC
Q 023822          210 NVVKFSNDG--RLMLLTTMEGHIHVLDSFR  237 (276)
Q Consensus       210 ~~~~~~~~~--~~l~~~~~dg~i~i~d~~~  237 (276)
                      .-+.+-|++  ..|++...||.+.+|-.+.
T Consensus       276 kfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  276 KFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             ceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            567777765  5688999999999997554

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.02  E-value=4.5e-07  Score=68.66  Aligned_cols=204  Identities=14%  Similarity=0.094  Sum_probs=122.2

Q ss_pred             CCeEEEEEccCCeeeeeeeeeeeceEEEE--EeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccC
Q 023822           55 DESIRLYDVTAATCLKTINSKKYGVDLVC--FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSS  132 (276)
Q Consensus        55 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~  132 (276)
                      +|+|..||..+|+.+....... ......  ..+++..++++..   ++.|..||..+++.+..... ...+.... ...
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~---~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~   75 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGP-GIGGPVATAVPDGGRVYVASG---DGNLYALDAKTGKVLWRFDL-PGPISGAP-VVD   75 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSS-SCSSEEETEEEETTEEEEEET---TSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEE
T ss_pred             CCEEEEEECCCCCEEEEEECCC-CCCCccceEEEeCCEEEEEcC---CCEEEEEECCCCCEEEEeec-ccccccee-eec
Confidence            6899999999999888775421 122222  3446777777766   99999999999998877764 22222111 224


Q ss_pred             CCEEEEeeCCCeEEEEeccCceeeeeE-eec-C-C---CeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCC
Q 023822          133 KDCFISGSLDRTVLLWDQRAEKCQGLL-RVQ-G-R---PAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGD  205 (276)
Q Consensus       133 ~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~-~-~---~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~  205 (276)
                      +..++.++.++.++.+|.++++..-.. ... + .   ........+..++++. ++.|..+|+++++.    +......
T Consensus        76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~----~w~~~~~  151 (238)
T PF13360_consen   76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKL----LWKYPVG  151 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEE----EEEEESS
T ss_pred             ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcE----EEEeecC
Confidence            556677778889999999999888774 222 1 1   1122222354444444 89999999998764    3322222


Q ss_pred             CCC----------ceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          206 ISD----------ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       206 ~~~----------i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      ...          +..-....++ .++.++.++.+.-+|+.+++.+-...     ...+..+ ..+++..|+.++.++.+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-----~~~~~~~-~~~~~~~l~~~~~~~~l  224 (238)
T PF13360_consen  152 EPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-----ISGIYSL-PSVDGGTLYVTSSDGRL  224 (238)
T ss_dssp             TT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-----SS-ECEC-EECCCTEEEEEETTTEE
T ss_pred             CCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-----CCCccCC-ceeeCCEEEEEeCCCEE
Confidence            111          1122222345 67777777754444999999764222     1222221 34666677766666543

...

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.01  E-value=1.3e-08  Score=73.99  Aligned_cols=166  Identities=16%  Similarity=0.157  Sum_probs=102.2

Q ss_pred             cceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCee-eeeeeeeeeceEEEEEeccCCeEEEeccCCC--CCc
Q 023822           26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATC-LKTINSKKYGVDLVCFTSHPTTVIYSSKNGW--DES  102 (276)
Q Consensus        26 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~--d~~  102 (276)
                      +.+.+..|+++-.+-+.+-.++.++++..||.+.+++.+.-.. ...+......-.+.+....++.+.++....+  -+.
T Consensus        81 ~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~  160 (319)
T KOG4714|consen   81 PFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDN  160 (319)
T ss_pred             ceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccc
Confidence            3344445555444444455577899999999999999765211 1111111112223333444555544432111  345


Q ss_pred             eEEEEccCCceeeeecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCceeeeeE---eecCCCeeEecCCC--cEE
Q 023822          103 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLL---RVQGRPAAAYDDQG--LVF  176 (276)
Q Consensus       103 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~--~~l  176 (276)
                      .+.|+++..+....-......|.+++-+|..+ .+++|+.||.+.+||.+.......+   +...+..+.|+|..  +++
T Consensus       161 ~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lf  240 (319)
T KOG4714|consen  161 FYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLF  240 (319)
T ss_pred             eeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhee
Confidence            56666654433222122233488999998554 7788889999999999987544433   66778899999965  677


Q ss_pred             EEeeCCeEEEEeccc
Q 023822          177 AVAFGGYIRMFDARK  191 (276)
Q Consensus       177 ~~~~d~~i~~~d~~~  191 (276)
                      +++.||.+..||..+
T Consensus       241 t~sedGslw~wdas~  255 (319)
T KOG4714|consen  241 TCSEDGSLWHWDAST  255 (319)
T ss_pred             EecCCCcEEEEcCCC
Confidence            777799999999874

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.96  E-value=3.6e-09  Score=79.81  Aligned_cols=139  Identities=17%  Similarity=0.247  Sum_probs=101.8

Q ss_pred             EEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCC-----ceeeeecccCcce
Q 023822           50 VTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN-----KYLRYFKGHHDRV  124 (276)
Q Consensus        50 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~-----~~~~~~~~~~~~i  124 (276)
                      ++.+.+-.+-+-|+++|-. +.+. ..+.|.++.|...++.+..|..   +|.|..+|++.+     .+...+. |...|
T Consensus       228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcR---ngeI~~iDLR~rnqG~~~~a~rly-h~Ssv  301 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCR---NGEIFVIDLRCRNQGNGWCAQRLY-HDSSV  301 (425)
T ss_pred             ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEeccc---CCcEEEEEeeecccCCCcceEEEE-cCcch
Confidence            3444556788888877643 2333 5567999999988999999998   999999999865     2344444 89999


Q ss_pred             EEEEecc-CCCEEEEeeCCCeEEEEeccCcee---eeeEeecC----CCeeEecCC-CcEEEEeeCCeEEEEecccCCC
Q 023822          125 VSLSLCS-SKDCFISGSLDRTVLLWDQRAEKC---QGLLRVQG----RPAAAYDDQ-GLVFAVAFGGYIRMFDARKYEK  194 (276)
Q Consensus       125 ~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~----~~~~~~~~~-~~~l~~~~d~~i~~~d~~~~~~  194 (276)
                      +++.... ++++|++.+.+|+|++||+|.-++   +..+..+-    ..-+.+++. |-++++|.|...++|.++.+..
T Consensus       302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghL  380 (425)
T KOG2695|consen  302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHL  380 (425)
T ss_pred             hhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCce
Confidence            9998776 778999999999999999998777   55543221    112334444 4555666689999999998664

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.96  E-value=7.4e-07  Score=77.95  Aligned_cols=201  Identities=12%  Similarity=0.208  Sum_probs=136.4

Q ss_pred             CCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEc----
Q 023822           33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL----  108 (276)
Q Consensus        33 h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~----  108 (276)
                      .++.|.++.|..+.+.++.+..+|.|.+-|.++... .....-...|.+++|+||.+.++..+.   .+++.+-.-    
T Consensus        67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~Dee~l~liT~---~~tll~mT~~f~~  142 (1265)
T KOG1920|consen   67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPDEELLALITG---RQTLLFMTKDFEP  142 (1265)
T ss_pred             CCcceEEEEEecccceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCCCcEEEEEeC---CcEEEEEeccccc
Confidence            346899999999999999999999999998776543 223334568999999999999998886   566655432    


Q ss_pred             cCCcee-------------------eeeccc---------------------CcceEEEEeccCCCEEEEeeC----C-C
Q 023822          109 HDNKYL-------------------RYFKGH---------------------HDRVVSLSLCSSKDCFISGSL----D-R  143 (276)
Q Consensus       109 ~~~~~~-------------------~~~~~~---------------------~~~i~~~~~~~~~~~l~~~~~----d-~  143 (276)
                      -..+++                   ..+.+.                     .+.=.++.|--||+++++...    + .
T Consensus       143 i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~R  222 (1265)
T KOG1920|consen  143 IAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTR  222 (1265)
T ss_pred             hhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCce
Confidence            111111                   111110                     111235899999999988332    3 7


Q ss_pred             eEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee----CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCC
Q 023822          144 TVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND  217 (276)
Q Consensus       144 ~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~----d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  217 (276)
                      .|++||.+ +.....-  ......+++|-|.|.++++-.    |+.|.+|.....+...+ ....+....++..++|+.+
T Consensus       223 kirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f-~l~~p~de~~ve~L~Wns~  300 (1265)
T KOG1920|consen  223 KIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEF-VLPFPLDEKEVEELAWNSN  300 (1265)
T ss_pred             eEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccccc-ccCCcccccchheeeecCC
Confidence            89999977 3322221  233356899999998888765    57799998776554332 2223334445899999999


Q ss_pred             CcEEEE---eecCCcEEEEECCCCc
Q 023822          218 GRLMLL---TTMEGHIHVLDSFRGT  239 (276)
Q Consensus       218 ~~~l~~---~~~dg~i~i~d~~~~~  239 (276)
                      +..||+   ......|++|-+.+..
T Consensus       301 sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  301 SDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             CCceeeeecccccceEEEEEecCeE
Confidence            999888   3444459999987654

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.95  E-value=6.8e-07  Score=74.35  Aligned_cols=221  Identities=10%  Similarity=0.053  Sum_probs=132.5

Q ss_pred             EcCCCCEEEEe-ecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCC-CCCceEEEEccCCceeeeecc
Q 023822           42 FHKSSSYLVTA-SDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG-WDESLRLLSLHDNKYLRYFKG  119 (276)
Q Consensus        42 ~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~d~~i~~~d~~~~~~~~~~~~  119 (276)
                      +.|||+.+... -..+.+.+.|.++.+...++.... ....+.++++++++++.+.++ ....+...+.........+..
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni  278 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI  278 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence            34566554322 234567777888777766665443 446788999999998886311 023343333322222222211


Q ss_pred             cCcceEEEEeccCCCEEEEeeCCCeEEEEeccC-----ceeeeeE-eecCCCeeEecCCCcEEEEee--CCeEEEEeccc
Q 023822          120 HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA-----EKCQGLL-RVQGRPAAAYDDQGLVFAVAF--GGYIRMFDARK  191 (276)
Q Consensus       120 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~-----~~~~~~~-~~~~~~~~~~~~~~~~l~~~~--d~~i~~~d~~~  191 (276)
                      .  .+  -++.++|++...  .+++|.+.|.++     .+....+ -......+.++|||++++++.  +.++.++|+.+
T Consensus       279 ~--~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k  352 (635)
T PRK02888        279 A--RI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK  352 (635)
T ss_pred             H--HH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChh
Confidence            0  00  123457776555  367899999998     4555555 344466899999999888887  89999999987


Q ss_pred             CCCC--------CeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCC----------CcEEEEeecC--CCCC
Q 023822          192 YEKG--------PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR----------GTLLSTYNVK--PVSR  251 (276)
Q Consensus       192 ~~~~--------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~----------~~~~~~~~~~--~~~~  251 (276)
                      .+..        ........ -.......+|.++|+...+-.-|..|..||+..          ...+..+..+  ++|.
T Consensus       353 ~k~~~~~~~~~~~~vvaeve-vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~  431 (635)
T PRK02888        353 LDDLFDGKIKPRDAVVAEPE-LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHN  431 (635)
T ss_pred             hhhhhhccCCccceEEEeec-cCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCcccee
Confidence            5520        00011111 123456789999998777788899999999876          2344444311  1221


Q ss_pred             CceEEEEECCCCcEEEEec
Q 023822          252 NSTLEASFSPEGMFVISGR  270 (276)
Q Consensus       252 ~~v~~~~~s~~g~~l~~~~  270 (276)
                      .....=.-.|||++|++..
T Consensus       432 ~~~~g~t~~~dgk~l~~~n  450 (635)
T PRK02888        432 HASMGETKEADGKWLVSLN  450 (635)
T ss_pred             eecCCCcCCCCCCEEEEcc
Confidence            1111122378999998853

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.95  E-value=2.2e-08  Score=74.80  Aligned_cols=191  Identities=14%  Similarity=0.239  Sum_probs=129.5

Q ss_pred             eeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCc-----eeeeecccC------------cceEEEEeccCCC--EE
Q 023822           76 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK-----YLRYFKGHH------------DRVVSLSLCSSKD--CF  136 (276)
Q Consensus        76 ~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~-----~~~~~~~~~------------~~i~~~~~~~~~~--~l  136 (276)
                      ...|+++.|...|.++++|..   .|.|.+|.-+...     ....++.|.            ..|..+.|..++.  .+
T Consensus        26 ad~ItaVefd~tg~YlatGDk---gGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF  102 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDK---GGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF  102 (460)
T ss_pred             cceeeEEEeccccceEeecCC---CceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence            346899999999999999987   7999999765432     122344443            2477888876543  67


Q ss_pred             EEeeCCCeEEEEeccCceee----------------------eeE-----------------------eecCCCeeEecC
Q 023822          137 ISGSLDRTVLLWDQRAEKCQ----------------------GLL-----------------------RVQGRPAAAYDD  171 (276)
Q Consensus       137 ~~~~~d~~i~iwd~~~~~~~----------------------~~~-----------------------~~~~~~~~~~~~  171 (276)
                      +..+.|.+|++|.+......                      +.+                       |...+.++.++.
T Consensus       103 LlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns  182 (460)
T COG5170         103 LLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS  182 (460)
T ss_pred             EEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC
Confidence            77888999999987643100                      000                       112234678888


Q ss_pred             CCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCC-----CCceEEEECCCC-cEEEEeecCCcEEEEECCCCcE-----
Q 023822          172 QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDI-----SDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTL-----  240 (276)
Q Consensus       172 ~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~-----  240 (276)
                      +...+.++.|=.|.+|++..... .+.+.....|.     .-|++..|+|.. ..+...+..|.|++-|++...+     
T Consensus       183 D~et~lSaDdLrINLWnl~i~D~-sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~  261 (460)
T COG5170         183 DKETLLSADDLRINLWNLEIIDG-SFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK  261 (460)
T ss_pred             chheeeeccceeeeeccccccCC-ceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch
Confidence            88889888899999999986553 34455554443     357889999964 5666777899999999873221     


Q ss_pred             -EEEeecC-------CCCCCceEEEEECCCCcEEEEec
Q 023822          241 -LSTYNVK-------PVSRNSTLEASFSPEGMFVISGR  270 (276)
Q Consensus       241 -~~~~~~~-------~~~~~~v~~~~~s~~g~~l~~~~  270 (276)
                       +......       .+-...|..+.|+++|+++++-+
T Consensus       262 klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd  299 (460)
T COG5170         262 KLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD  299 (460)
T ss_pred             hhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec
Confidence             1111100       01235788999999999998754

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.94  E-value=5.7e-06  Score=62.97  Aligned_cols=180  Identities=16%  Similarity=0.187  Sum_probs=112.1

Q ss_pred             EEEEEEc-CCCCEEEEeecCCeEEEEEccCCeeeeeeee-----eeeceEEEEEeccCCeEEEeccCCC---C--CceEE
Q 023822           37 ISSMDFH-KSSSYLVTASDDESIRLYDVTAATCLKTINS-----KKYGVDLVCFTSHPTTVIYSSKNGW---D--ESLRL  105 (276)
Q Consensus        37 v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~~~~---d--~~i~~  105 (276)
                      ...+++. +++ .|+.+...+ +.++|..+++.......     .....+.+++.++|+..++......   .  +.|..
T Consensus        42 ~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~  119 (246)
T PF08450_consen   42 PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR  119 (246)
T ss_dssp             EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred             CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence            6677777 565 455555544 56669888865544443     3456889999999996666543110   1  45666


Q ss_pred             EEccCCceeeeecccCcceEEEEeccCCCEEE-EeeCCCeEEEEeccCcee----eeeE-eecC----CCeeEecCCCcE
Q 023822          106 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFI-SGSLDRTVLLWDQRAEKC----QGLL-RVQG----RPAAAYDDQGLV  175 (276)
Q Consensus       106 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~----~~~~-~~~~----~~~~~~~~~~~~  175 (276)
                      ++.. ++..... ..-...+.++|+|+++.|+ +-+..+.|..+++.....    ...+ ....    .-.++++.+|++
T Consensus       120 ~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l  197 (246)
T PF08450_consen  120 IDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNL  197 (246)
T ss_dssp             EETT-SEEEEEE-EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-E
T ss_pred             ECCC-CeEEEEe-cCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCE
Confidence            7766 4433333 3345568999999998665 566788899999864322    1222 2222    336999999998


Q ss_pred             EEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEE-CCCCcEEEEee
Q 023822          176 FAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKF-SNDGRLMLLTT  225 (276)
Q Consensus       176 l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~  225 (276)
                      .++.. .+.|.++|.+ ++.  .....+.  ...+++++| -|+.+.|+..+
T Consensus       198 ~va~~~~~~I~~~~p~-G~~--~~~i~~p--~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  198 WVADWGGGRIVVFDPD-GKL--LREIELP--VPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEEEETTTEEEEEETT-SCE--EEEEE-S--SSSEEEEEEESTTSSEEEEEE
T ss_pred             EEEEcCCCEEEEECCC-ccE--EEEEcCC--CCCEEEEEEECCCCCEEEEEe
Confidence            88877 7999999987 332  2233333  347899999 46666565543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.94  E-value=4.6e-07  Score=73.93  Aligned_cols=212  Identities=10%  Similarity=0.081  Sum_probs=123.0

Q ss_pred             CEEEEeecCCeEEEEEccCCeeeeeeeeeeece-----EEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccC
Q 023822           47 SYLVTASDDESIRLYDVTAATCLKTINSKKYGV-----DLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHH  121 (276)
Q Consensus        47 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~  121 (276)
                      ..++.+..++.+.-+|.++|+.+-.+.......     ..-..  .+..++.+..   ++.+..+|..+++.+.......
T Consensus       161 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~---~g~v~a~d~~~G~~~W~~~~~~  235 (394)
T PRK11138        161 GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGD---NGRVSAVLMEQGQLIWQQRISQ  235 (394)
T ss_pred             CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcC---CCEEEEEEccCChhhheecccc
Confidence            345556667777888887777766554321100     00111  1234555655   8889999999888766543111


Q ss_pred             c-------ceEEEEecc--CCCEEEEeeCCCeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEeeCCeEEEEecccC
Q 023822          122 D-------RVVSLSLCS--SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKY  192 (276)
Q Consensus       122 ~-------~i~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~  192 (276)
                      .       ....+.-+|  .+..++.++.+|.+..+|..+++.+-.........+.. .++++++.+.++.+..+|..++
T Consensus       236 ~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~-~~~~vy~~~~~g~l~ald~~tG  314 (394)
T PRK11138        236 PTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSVNDFAV-DGGRIYLVDQNDRVYALDTRGG  314 (394)
T ss_pred             CCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCccCcEE-ECCEEEEEcCCCeEEEEECCCC
Confidence            0       011111122  34567777889999999999987654443222222222 3456666667999999999876


Q ss_pred             CCCCeeeeeecCC-CCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceE-EEEECCCCcEEEEec
Q 023822          193 EKGPFDIFSVGGD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTL-EASFSPEGMFVISGR  270 (276)
Q Consensus       193 ~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~-~~~~s~~g~~l~~~~  270 (276)
                      +.    ....... .....+...  .+.+|+.++.+|.|+..|..+|+.+...+.   ....+. ...+  .+..|+.++
T Consensus       315 ~~----~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~---~~~~~~s~P~~--~~~~l~v~t  383 (394)
T PRK11138        315 VE----LWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKV---DSSGFLSEPVV--ADDKLLIQA  383 (394)
T ss_pred             cE----EEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc---CCCcceeCCEE--ECCEEEEEe
Confidence            53    2221111 111122222  245678899999999999999999888763   222222 1222  244788888


Q ss_pred             CCCCC
Q 023822          271 VSPFS  275 (276)
Q Consensus       271 ~dg~v  275 (276)
                      .||.+
T Consensus       384 ~~G~l  388 (394)
T PRK11138        384 RDGTV  388 (394)
T ss_pred             CCceE
Confidence            88864

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.92  E-value=1.2e-09  Score=91.92  Aligned_cols=190  Identities=12%  Similarity=0.157  Sum_probs=136.0

Q ss_pred             eeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCC--e
Q 023822           67 TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR--T  144 (276)
Q Consensus        67 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--~  144 (276)
                      +....+..+....+|++|+...++|++|..   .|.|++|++.+|.......+|...|+-+.-+.+|.++++.+.-.  -
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~---~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSH---AGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeec---cceEEEEEccCccccccccccccccccccccCCcceeeeeccccCch
Confidence            445667778888999999999999999998   99999999999999999999999999999888998766655433  4


Q ss_pred             EEEEeccC-ceeeeeEeecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEE
Q 023822          145 VLLWDQRA-EKCQGLLRVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLML  222 (276)
Q Consensus       145 i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  222 (276)
                      ..+|++.+ +...+.+  ..-.++.|+.....-+.|. .....+||+++...-........+....-+...|+|+..+++
T Consensus      1169 saLW~~~s~~~~~Hsf--~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSF--DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred             HHHhccccccCccccc--cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence            67999875 2333333  2334677877655555555 577899999986542211112222233447789999988776


Q ss_pred             EeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEec
Q 023822          223 LTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGR  270 (276)
Q Consensus       223 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  270 (276)
                         .||  .+||.+..+.++.|..   ....+ .=.|+|.|.-++.-+
T Consensus      1247 ---ndG--vLWDvR~~~aIh~FD~---ft~~~-~G~FHP~g~eVIINS 1285 (1516)
T KOG1832|consen 1247 ---NDG--VLWDVRIPEAIHRFDQ---FTDYG-GGGFHPSGNEVIINS 1285 (1516)
T ss_pred             ---eCc--eeeeeccHHHHhhhhh---heecc-cccccCCCceEEeec
Confidence               566  5899998888887762   22222 235889887776544

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.92  E-value=1.4e-06  Score=71.04  Aligned_cols=222  Identities=11%  Similarity=0.040  Sum_probs=117.7

Q ss_pred             eeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEc
Q 023822           29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL  108 (276)
Q Consensus        29 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~  108 (276)
                      .+....-....+.++|+|++++. +.||.-.|+.....+...     .+......|.+.+ .+++-..   ...|.++.-
T Consensus        27 ~lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n-~yAv~~~---~~~I~I~kn   96 (443)
T PF04053_consen   27 ELGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN-RYAVLES---SSTIKIYKN   96 (443)
T ss_dssp             EEEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS-EEEEE-T---TS-EEEEET
T ss_pred             cCCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-----cCceeEEEEecCc-cEEEEEC---CCeEEEEEc
Confidence            33344556789999999999988 567888888854444322     3455678898844 4666655   788999743


Q ss_pred             cCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEeeCCeEEEEe
Q 023822          109 HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFD  188 (276)
Q Consensus       109 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~~~d  188 (276)
                      -+.+....++. +..+..+-.   |.+|...+.+ .|.+||..+++.+..+...++..+.|++++.+++..++..+.+++
T Consensus        97 ~~~~~~k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~~i~il~  171 (443)
T PF04053_consen   97 FKNEVVKSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKDSIYILK  171 (443)
T ss_dssp             TEE-TT------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S-SEEEEE
T ss_pred             CccccceEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCCeEEEEE
Confidence            23333223332 122333422   7777777644 899999999999999977778899999999999999988899988


Q ss_pred             cccC------CCCCe-eeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECC
Q 023822          189 ARKY------EKGPF-DIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP  261 (276)
Q Consensus       189 ~~~~------~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~  261 (276)
                      ....      +.... .......-...|.+.+|..+  .++..+.. .++-  +..|+.-....    ...++.=+...|
T Consensus       172 ~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~----ld~~~yllgy~~  242 (443)
T PF04053_consen  172 YNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAH----LDKPLYLLGYLP  242 (443)
T ss_dssp             E-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-----SS--EEEEEET
T ss_pred             ecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEE----cCCceEEEEEEc
Confidence            6543      00000 01111111457888999876  34333333 6665  33444322222    234566666677


Q ss_pred             CCcEEEEecCCCC
Q 023822          262 EGMFVISGRVSPF  274 (276)
Q Consensus       262 ~g~~l~~~~~dg~  274 (276)
                      ..+.++....|+.
T Consensus       243 ~~~~ly~~Dr~~~  255 (443)
T PF04053_consen  243 KENRLYLIDRDGN  255 (443)
T ss_dssp             TTTEEEEE-TT--
T ss_pred             cCCEEEEEECCCC
Confidence            6566666655543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=5.3e-08  Score=76.16  Aligned_cols=218  Identities=15%  Similarity=0.165  Sum_probs=148.6

Q ss_pred             cccceeeccCCCcEEEEEEcCCCCEEEEeec-CCeEEEEEccCCeeeeeeeeeeeceEEEEEe-ccC---CeEEEeccCC
Q 023822           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASD-DESIRLYDVTAATCLKTINSKKYGVDLVCFT-SHP---TTVIYSSKNG   98 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-~~~---~~l~~~~~~~   98 (276)
                      .+.+..++.|.+.|.+++.+-++..+.+.+. |..++++|+++-..+..++...-+ ..+.|. ..|   ..+++.... 
T Consensus        43 vEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP-g~a~wv~skGd~~s~IAVs~~~-  120 (558)
T KOG0882|consen   43 VEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP-GFAEWVTSKGDKISLIAVSLFK-  120 (558)
T ss_pred             eeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCC-CceEEecCCCCeeeeEEeeccc-
Confidence            4556677889999999999999999999777 999999999876655433322111 112222 222   134444332 


Q ss_pred             CCCceEEEEccCCc--eeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccC------ceeeeeE-----------
Q 023822           99 WDESLRLLSLHDNK--YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA------EKCQGLL-----------  159 (276)
Q Consensus        99 ~d~~i~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~------~~~~~~~-----------  159 (276)
                       ++.+.++|-....  ....-.-|..+|..+.+.+-+..+++....|.|..|....      .+....+           
T Consensus       121 -sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K  199 (558)
T KOG0882|consen  121 -SGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPK  199 (558)
T ss_pred             -CCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccc
Confidence             8999999965543  2233355899999999999999999999999999998773      1110011           


Q ss_pred             eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCC----------------eee------------eeecCCC-CCc
Q 023822          160 RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGP----------------FDI------------FSVGGDI-SDA  209 (276)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~----------------~~~------------~~~~~~~-~~i  209 (276)
                      ......++.++|++..++.-. |..|++++.++++...                +.+            ..+..+. ..-
T Consensus       200 ~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~  279 (558)
T KOG0882|consen  200 AKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVG  279 (558)
T ss_pred             cccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCccc
Confidence            112345899999998877766 8999999998865211                000            0011121 234


Q ss_pred             eEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEee
Q 023822          210 NVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  245 (276)
Q Consensus       210 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  245 (276)
                      +.+.|...|++|+.++.=| |++.++.++++.+.+-
T Consensus       280 ~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g  314 (558)
T KOG0882|consen  280 TNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG  314 (558)
T ss_pred             ceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence            5678999999999998776 8999999888877664

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.90  E-value=3e-07  Score=74.70  Aligned_cols=204  Identities=14%  Similarity=0.164  Sum_probs=126.4

Q ss_pred             EEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCC-CceEEEEccCCceeeeecccCcceEEEEeccCCCEE
Q 023822           58 IRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD-ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF  136 (276)
Q Consensus        58 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d-~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  136 (276)
                      +.+-|.+ +...+.+......+..-.|+|+++.++........ ..+.++++++++....+. ..+.-...+|+|||++|
T Consensus       175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l  252 (425)
T COG0823         175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKL  252 (425)
T ss_pred             EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEE
Confidence            3444433 44445555555667788999999887766443213 469999999887655544 33344567899999976


Q ss_pred             EEe-eCCCe--EEEEeccCceeeeeEeecCC-CeeEecCCCcEEEEeeC--C--eEEEEecccCCCCCeeeeeecCCCCC
Q 023822          137 ISG-SLDRT--VLLWDQRAEKCQGLLRVQGR-PAAAYDDQGLVFAVAFG--G--YIRMFDARKYEKGPFDIFSVGGDISD  208 (276)
Q Consensus       137 ~~~-~~d~~--i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~d--~--~i~~~d~~~~~~~~~~~~~~~~~~~~  208 (276)
                      +.+ ..||.  |.++|+......+..+..++ ..-.|+|+|+.++..+|  |  .|.+++......   ........  .
T Consensus       253 ~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~---~riT~~~~--~  327 (425)
T COG0823         253 AFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV---TRLTFSGG--G  327 (425)
T ss_pred             EEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce---eEeeccCC--C
Confidence            654 44554  77778887774442233332 36789999988887774  4  466666665432   12222222  1


Q ss_pred             ceEEEECCCCcEEEEeecC-Cc--EEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCC
Q 023822          209 ANVVKFSNDGRLMLLTTME-GH--IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVS  272 (276)
Q Consensus       209 i~~~~~~~~~~~l~~~~~d-g~--i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  272 (276)
                      -..-.|+|||++++..+.. |.  |.+.|+.++...+.+.    .......-.|.|+|+.+...+..
T Consensus       328 ~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt----~~~~~e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         328 NSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT----STYLNESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             CcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc----ccccCCCCCcCCCCceEEEeccC
Confidence            2267899999999887743 44  6777776666544444    33333445677888776655443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.90  E-value=2.2e-07  Score=78.48  Aligned_cols=110  Identities=10%  Similarity=0.154  Sum_probs=89.1

Q ss_pred             EEEEEEcCCCCEEEEee----cCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCc
Q 023822           37 ISSMDFHKSSSYLVTAS----DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK  112 (276)
Q Consensus        37 v~~~~~~~~~~~l~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~  112 (276)
                      -+-..|+|...+||+++    ..|.|.||- ++|++.+...- +-.+++++|+|..-.|+.+-.   -|.+.+|...+.+
T Consensus        18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe---~g~~~v~~~~~~e   92 (1416)
T KOG3617|consen   18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWE---MGVSDVQKTNTTE   92 (1416)
T ss_pred             ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc-ceehhhhccChHHHHHhhccc---cceeEEEecCCce
Confidence            34467999999998876    457888884 66765443322 224667999999888888887   8999999988877


Q ss_pred             eeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEecc
Q 023822          113 YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR  151 (276)
Q Consensus       113 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~  151 (276)
                      .......|+.+|..+.|+++|..++++..-|.+.+|...
T Consensus        93 ~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   93 THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            766677899999999999999999999999999999876

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.89  E-value=3.6e-07  Score=76.52  Aligned_cols=154  Identities=12%  Similarity=0.175  Sum_probs=112.8

Q ss_pred             eeccCCCcEEEEEEcCC-------------CCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEecc-----CCe
Q 023822           29 SFRDYNGRISSMDFHKS-------------SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH-----PTT   90 (276)
Q Consensus        29 ~~~~h~~~v~~~~~~~~-------------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~   90 (276)
                      .|..|.+.|.-..+.-+             |.++++|+.||.|.|-.+.+.+....+..+ .++.+++++|+     .+.
T Consensus        53 ~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~-rpiksial~Pd~~~~~sk~  131 (846)
T KOG2066|consen   53 ALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYDFK-RPIKSIALHPDFSRQQSKQ  131 (846)
T ss_pred             eeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEecC-CcceeEEeccchhhhhhhh
Confidence            35567877776666544             899999999999999999888877766654 48999999998     567


Q ss_pred             EEEeccCCCCCceEEEEccC--CceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecC-----
Q 023822           91 VIYSSKNGWDESLRLLSLHD--NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-----  163 (276)
Q Consensus        91 l~~~~~~~~d~~i~~~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----  163 (276)
                      +++|+.   .| +.++.-+-  .+....+..-.++|.++.|  .|+++|-++.+| |++||+.+.+.+..+....     
T Consensus       132 fv~GG~---ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~  204 (846)
T KOG2066|consen  132 FVSGGM---AG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRP  204 (846)
T ss_pred             eeecCc---ce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCc
Confidence            888886   66 77775321  1222245556789999999  578888888776 8999999988777662211     


Q ss_pred             ---CCeeEecCCCcEEEEeeCCeEEEEeccc
Q 023822          164 ---RPAAAYDDQGLVFAVAFGGYIRMFDARK  191 (276)
Q Consensus       164 ---~~~~~~~~~~~~l~~~~d~~i~~~d~~~  191 (276)
                         .+.+.|.++.+ ++.|...+|++..++.
T Consensus       205 e~fpphl~W~~~~~-LVIGW~d~v~i~~I~~  234 (846)
T KOG2066|consen  205 ELFPPHLHWQDEDR-LVIGWGDSVKICSIKK  234 (846)
T ss_pred             ccCCCceEecCCCe-EEEecCCeEEEEEEec
Confidence               23566666554 5667777899998884

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.89  E-value=1.1e-07  Score=80.71  Aligned_cols=178  Identities=15%  Similarity=0.191  Sum_probs=128.5

Q ss_pred             cCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecCCCe
Q 023822           87 HPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA  166 (276)
Q Consensus        87 ~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  166 (276)
                      ++..++.|+-   ...+..+|+++.+..+...-..+.|.-|+.  +++.+.+|...|+|.+-|.++.+.++++..+....
T Consensus       146 ~~~~~i~Gg~---Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~si  220 (1118)
T KOG1275|consen  146 GPSTLIMGGL---QEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSI  220 (1118)
T ss_pred             CCcceeecch---hhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccce
Confidence            3455666665   778889999988877766544445555544  67899999999999999999999999998777777


Q ss_pred             eEecCCCcEEEEee----------CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCC-CcEEEEeecCCcEEEEEC
Q 023822          167 AAYDDQGLVFAVAF----------GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDS  235 (276)
Q Consensus       167 ~~~~~~~~~l~~~~----------d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~  235 (276)
                      ..|+-+|++|+++.          |..|+|||+|..+.    +..+.-+. ...-+.|+|. ...+++++..|...+-|.
T Consensus       221 SDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra----l~PI~~~~-~P~flrf~Psl~t~~~V~S~sGq~q~vd~  295 (1118)
T KOG1275|consen  221 SDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA----LSPIQFPY-GPQFLRFHPSLTTRLAVTSQSGQFQFVDT  295 (1118)
T ss_pred             eeeeccCCeEEEeecccccccccccchhhhhhhhhhhc----cCCccccc-CchhhhhcccccceEEEEecccceeeccc
Confidence            88888887776654          45689999998664    11111111 2245678885 356888899999999994


Q ss_pred             CCC-cE-EEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          236 FRG-TL-LSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       236 ~~~-~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      .+- .+ ...+... .....+..+.+|++|+.|+.|..+|.|
T Consensus       296 ~~lsNP~~~~~~v~-p~~s~i~~fDiSsn~~alafgd~~g~v  336 (1118)
T KOG1275|consen  296 ATLSNPPAGVKMVN-PNGSGISAFDISSNGDALAFGDHEGHV  336 (1118)
T ss_pred             cccCCCccceeEEc-cCCCcceeEEecCCCceEEEecccCcE
Confidence            321 11 1122222 245669999999999999999999865

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.89  E-value=9.8e-07  Score=71.74  Aligned_cols=190  Identities=15%  Similarity=0.174  Sum_probs=122.4

Q ss_pred             eccCCCcEEEEEEcCCCCEEEEee---cC-CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEE
Q 023822           30 FRDYNGRISSMDFHKSSSYLVTAS---DD-ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL  105 (276)
Q Consensus        30 ~~~h~~~v~~~~~~~~~~~l~~~~---~d-~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~  105 (276)
                      +..-...+..-+|+|++..++..+   .. ..+.++++++++...... ..+.-..-+|+|+++.++.+......-.|.+
T Consensus       188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~  266 (425)
T COG0823         188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYL  266 (425)
T ss_pred             ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEE
Confidence            334456677889999998776543   22 468999999887655544 2334556789999999998877533556777


Q ss_pred             EEccCCceeeeecccCcceEEEEeccCCCEEEEeeC-CC--eEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee-
Q 023822          106 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DR--TVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF-  180 (276)
Q Consensus       106 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-  180 (276)
                      +|+.++...+ +....+.-..-.|+|||+.++..+. .|  .|.++|.+........ ....-..-.++|+|+.++... 
T Consensus       267 ~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~  345 (425)
T COG0823         267 MDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESS  345 (425)
T ss_pred             EcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEec
Confidence            7887776333 5433444446789999997776654 44  4777777776654433 333333788999999888777 


Q ss_pred             -CCe--EEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeec
Q 023822          181 -GGY--IRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM  226 (276)
Q Consensus       181 -d~~--i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  226 (276)
                       +|.  |.+.|+.+...  ....   ........-.|.|+|+.+...+.
T Consensus       346 ~~g~~~i~~~~~~~~~~--~~~l---t~~~~~e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         346 SGGQWDIDKNDLASGGK--IRIL---TSTYLNESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             cCCceeeEEeccCCCCc--EEEc---cccccCCCCCcCCCCceEEEecc
Confidence             555  56666655432  1121   22223344578888887766544

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.88  E-value=1.8e-06  Score=73.03  Aligned_cols=223  Identities=10%  Similarity=0.109  Sum_probs=142.0

Q ss_pred             EEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeec-eEEEEEeccCCeEEEeccCCC-CC-ceEEEEccCC---c--
Q 023822           41 DFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYG-VDLVCFTSHPTTVIYSSKNGW-DE-SLRLLSLHDN---K--  112 (276)
Q Consensus        41 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~~~~-d~-~i~~~d~~~~---~--  112 (276)
                      +|++.+..++.|+.+|.|.+.+ ...+.+..++.+... |..+....+...|++.+.+.. +. .+++|+++.-   +  
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            4567788999999999998887 344555777777766 444444444467777776321 22 6999998643   1  


Q ss_pred             -eee--eecc-----cCcceEEEEeccCCCEEEEeeCCCeEEEEecc---CceeeeeE---eecCCCeeEecCCCcE-EE
Q 023822          113 -YLR--YFKG-----HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR---AEKCQGLL---RVQGRPAAAYDDQGLV-FA  177 (276)
Q Consensus       113 -~~~--~~~~-----~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~---~~~~~~~~---~~~~~~~~~~~~~~~~-l~  177 (276)
                       ++.  .+..     .+.++.+++.+.+-+.+|.|-.+|.|..+.=+   .......+   ...+++.+++..++.. +.
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF  188 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF  188 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence             221  1112     24578899999998899999999999988522   11111111   4456888888887765 55


Q ss_pred             EeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEE
Q 023822          178 VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA  257 (276)
Q Consensus       178 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~  257 (276)
                      +.+-.+|.+|.+....  | ....+..+..+.+|..+++....+++++. ..+.+|+....+.-..+..  +++..   +
T Consensus       189 v~Tt~~V~~y~l~gr~--p-~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~--g~kk~---~  259 (933)
T KOG2114|consen  189 VATTEQVMLYSLSGRT--P-SLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEV--GEKKE---M  259 (933)
T ss_pred             EEecceeEEEEecCCC--c-ceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecC--CCeEE---E
Confidence            5556889999998433  1 13335667778999999986654555543 4699999876665555542  23332   2


Q ss_pred             EECCCCcEEEEecCCC
Q 023822          258 SFSPEGMFVISGRVSP  273 (276)
Q Consensus       258 ~~s~~g~~l~~~~~dg  273 (276)
                      -|...|.+|+....-|
T Consensus       260 ~~~~~g~~L~v~~~~~  275 (933)
T KOG2114|consen  260 LVFSFGLLLCVTTDKG  275 (933)
T ss_pred             EEEecCEEEEEEccCC
Confidence            3333455555544443

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=2e-07  Score=72.01  Aligned_cols=240  Identities=10%  Similarity=0.099  Sum_probs=134.9

Q ss_pred             cccceeeccCCCcEEEEEEcCCCC-EEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCc
Q 023822           24 MEVGMSFRDYNGRISSMDFHKSSS-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES  102 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~  102 (276)
                      ++....+.+|...|..++|+|..+ ++..++.+..|+|.|+++...+..+..+ ..+++++|..+..+.+.++..  +|.
T Consensus       183 fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~--nG~  259 (463)
T KOG1645|consen  183 FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQ--NGM  259 (463)
T ss_pred             cchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEecc--Cce
Confidence            344456778889999999999766 7888999999999999999998888887 689999999988877776653  899


Q ss_pred             eEEEEccCCce-eeeecc--cCcceEEEEe------ccCCCEEEEeeCCCeEEEEeccCc--eeeeeEeec---CCCeeE
Q 023822          103 LRLLSLHDNKY-LRYFKG--HHDRVVSLSL------CSSKDCFISGSLDRTVLLWDQRAE--KCQGLLRVQ---GRPAAA  168 (276)
Q Consensus       103 i~~~d~~~~~~-~~~~~~--~~~~i~~~~~------~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~---~~~~~~  168 (276)
                      |.+||++..+- +..+.+  ...+|..++.      .+.+.+++..+.+  +..|++...  .....++..   ....+.
T Consensus       260 VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismq  337 (463)
T KOG1645|consen  260 VLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQ  337 (463)
T ss_pred             EEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeee
Confidence            99999986542 222211  1223333332      2234444444432  455654422  111212111   112344


Q ss_pred             ecCCCcEEEEee--C---CeEEEEecccCCCCCeeee-eecCC----CC---CceEEEECCCCcEEEE-eecCCcEEEEE
Q 023822          169 YDDQGLVFAVAF--G---GYIRMFDARKYEKGPFDIF-SVGGD----IS---DANVVKFSNDGRLMLL-TTMEGHIHVLD  234 (276)
Q Consensus       169 ~~~~~~~l~~~~--d---~~i~~~d~~~~~~~~~~~~-~~~~~----~~---~i~~~~~~~~~~~l~~-~~~dg~i~i~d  234 (276)
                      +++..+.+..+.  +   -+++..=.+........+. ....+    ..   .-..+.-.++.++++. +...+.+.+||
T Consensus       338 y~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D  417 (463)
T KOG1645|consen  338 YHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQD  417 (463)
T ss_pred             ecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEec
Confidence            444333333332  1   0111100000000000000 00000    00   0011222344455544 55567899999


Q ss_pred             CCCCcEEEEeecCCCCCCceEEEEECCC--CcEEEEecCC
Q 023822          235 SFRGTLLSTYNVKPVSRNSTLEASFSPE--GMFVISGRVS  272 (276)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~--g~~l~~~~~d  272 (276)
                      ..+++.++.+.    ...+|.+++...-  +.+|+.-.+|
T Consensus       418 ~~s~evvQ~l~----~~epv~Dicp~~~n~~syLa~LTd~  453 (463)
T KOG1645|consen  418 PHSFEVVQTLA----LSEPVLDICPNDTNGSSYLALLTDD  453 (463)
T ss_pred             cchhheeeecc----cCcceeecceeecCCcchhhheecc
Confidence            99999999997    4578888776442  3466655444

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.84  E-value=1.1e-05  Score=65.42  Aligned_cols=220  Identities=14%  Similarity=0.118  Sum_probs=152.6

Q ss_pred             EEEEEcCCCCEE-EEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeee
Q 023822           38 SSMDFHKSSSYL-VTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRY  116 (276)
Q Consensus        38 ~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~  116 (276)
                      ..++.++.++.+ ++...++.|.+.|..+.+......... ....+++.++++.+.++.....++.+.+.|..+++....
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~  155 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT  155 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence            467888877754 444456899999987777666655433 677899999999998887632378999999998888877


Q ss_pred             ecccCcceEEEEeccCCCEEEEee-CCCeEEEEeccCceeee-e----E-eecCCCeeEecCCCcEEEEee--C--CeEE
Q 023822          117 FKGHHDRVVSLSLCSSKDCFISGS-LDRTVLLWDQRAEKCQG-L----L-RVQGRPAAAYDDQGLVFAVAF--G--GYIR  185 (276)
Q Consensus       117 ~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~-~----~-~~~~~~~~~~~~~~~~l~~~~--d--~~i~  185 (276)
                      ...-..+ ..+++.|+++.++.+. .++.|.+.|........ .    . .......+.++|++..+.+..  +  +.+.
T Consensus       156 ~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~  234 (381)
T COG3391         156 IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVL  234 (381)
T ss_pred             EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEE
Confidence            5543344 8899999999666555 68899999987776653 1    2 334456789999998666665  2  4788


Q ss_pred             EEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeec-CCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCC
Q 023822          186 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  262 (276)
Q Consensus       186 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~  262 (276)
                      ..|..+...  .......... ....+..+|+|+++.+... .+.+.+.|..+......+.........+..+++.+.
T Consensus       235 ~id~~~~~v--~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~  309 (381)
T COG3391         235 KIDTATGNV--TATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL  309 (381)
T ss_pred             EEeCCCceE--EEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence            888776442  1110111122 4567899999999888744 488999999988887776532222333555555553

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.84  E-value=4.5e-08  Score=71.27  Aligned_cols=193  Identities=14%  Similarity=0.146  Sum_probs=113.8

Q ss_pred             EEEEEEcCCCCEEEEeecCCeEEEEEccCCeeee------------eeeeeeeceEEEEEeccCCeEEEeccCCCCCceE
Q 023822           37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLK------------TINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (276)
Q Consensus        37 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~------------~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~  104 (276)
                      |+.+.+..+ ..|+++..++.+..+....+.+..            .+..+.++-.+-..+--++.++++..   ||.+.
T Consensus        39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~---dg~~~  114 (319)
T KOG4714|consen   39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYA---DGSLA  114 (319)
T ss_pred             EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCC---CceEE
Confidence            556666543 467777777766665544333222            12222222222222334567788877   99999


Q ss_pred             EEEccCCcee-eeecc-cCcceEEEEeccCCCEEEEeeC-----CCeEEEEeccCceeeee--EeecCCCeeEecCCC-c
Q 023822          105 LLSLHDNKYL-RYFKG-HHDRVVSLSLCSSKDCFISGSL-----DRTVLLWDQRAEKCQGL--LRVQGRPAAAYDDQG-L  174 (276)
Q Consensus       105 ~~d~~~~~~~-~~~~~-~~~~i~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~-~  174 (276)
                      +++.+.-..+ ..+.. |.+ -.+.+....++.+.++.-     -+..+.|+++..+....  .....+.+++-+|.. +
T Consensus       115 v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~  193 (319)
T KOG4714|consen  115 VFSTDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQH  193 (319)
T ss_pred             EEechHHHhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCccccc
Confidence            9987652111 11111 111 122223334444444321     23456676665433222  234457788888865 4


Q ss_pred             EEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECC-CCcEEEEeecCCcEEEEECCC
Q 023822          175 VFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFR  237 (276)
Q Consensus       175 ~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~  237 (276)
                      ++++++ ||.+.+||.++...   ....+..|..+++.+-|+| ++..|+++++||.+.-||..+
T Consensus       194 ~v~cgt~dg~~~l~d~rn~~~---p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  194 LVCCGTDDGIVGLWDARNVAM---PVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             EEEEecCCCeEEEEEcccccc---hHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            555555 89999999998632   2444667899999999999 467899999999999999653

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.83  E-value=8.2e-06  Score=61.29  Aligned_cols=205  Identities=12%  Similarity=0.189  Sum_probs=111.1

Q ss_pred             eeeccCCCcEEEEEEcCCCC-EEEEeecCCeEEEEEccCCeeeeeeeeee-eceEEEEEeccCCeEEEeccCCCCCceEE
Q 023822           28 MSFRDYNGRISSMDFHKSSS-YLVTASDDESIRLYDVTAATCLKTINSKK-YGVDLVCFTSHPTTVIYSSKNGWDESLRL  105 (276)
Q Consensus        28 ~~~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~d~~i~~  105 (276)
                      +.+.+-...+..++|+|+.+ ++++....+.|...+. +|+.++.+.... +..-.+++..++.++++.-.   ++.+.+
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er---~~~L~~   90 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEER---DQRLYI   90 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETT---TTEEEE
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcC---CCcEEE
Confidence            34556566799999999755 6666777888888886 578887775442 45778888877766665544   888999


Q ss_pred             EEccCCc------eeeee-----cccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecCCCeeEecCCCc
Q 023822          106 LSLHDNK------YLRYF-----KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGL  174 (276)
Q Consensus       106 ~d~~~~~------~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  174 (276)
                      +++....      ....+     ..++..+-.++|.|.++.|+.+-...-..+|.++...                    
T Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~--------------------  150 (248)
T PF06977_consen   91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP--------------------  150 (248)
T ss_dssp             EEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT--------------------
T ss_pred             EEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc--------------------
Confidence            9884321      11111     1244568889999987777776555444444443211                    


Q ss_pred             EEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCC-CcEEEEeecCCcEEEEECCCCcEEEEeecCCCCC--
Q 023822          175 VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR--  251 (276)
Q Consensus       175 ~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--  251 (276)
                           .+..+.+.+.....       ........+.+++++|. |.+++....+..|..+| .+|+.+..+....+..  
T Consensus       151 -----~~~~~~~~~~~~~~-------~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl  217 (248)
T PF06977_consen  151 -----GGFDLFVSDDQDLD-------DDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGL  217 (248)
T ss_dssp             ------SS--EEEE-HHHH--------HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-
T ss_pred             -----Cccceeeccccccc-------cccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCc
Confidence                 01112222211100       01112234778999996 56666677788899999 7888887776433211  


Q ss_pred             ----CceEEEEECCCCcEEEEe
Q 023822          252 ----NSTLEASFSPEGMFVISG  269 (276)
Q Consensus       252 ----~~v~~~~~s~~g~~l~~~  269 (276)
                          ...-.++|.++|++.+++
T Consensus       218 ~~~~~QpEGIa~d~~G~LYIvs  239 (248)
T PF06977_consen  218 SKDIPQPEGIAFDPDGNLYIVS  239 (248)
T ss_dssp             SS---SEEEEEE-TT--EEEEE
T ss_pred             ccccCCccEEEECCCCCEEEEc
Confidence                246789999999877665

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.79  E-value=6e-07  Score=75.26  Aligned_cols=170  Identities=12%  Similarity=0.082  Sum_probs=118.4

Q ss_pred             ceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeee
Q 023822           78 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG  157 (276)
Q Consensus        78 ~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  157 (276)
                      .+.++++  .+++++.|+.   +|.|++++.... + .+...|...      ..+|.++++|+.||+|.|-.+-+.+...
T Consensus        41 ~is~~av--~~~~~~~GtH---~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~  107 (846)
T KOG2066|consen   41 AISCCAV--HDKFFALGTH---RGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT  107 (846)
T ss_pred             HHHHHHh--hcceeeeccc---cceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence            4556666  4678888888   999999987543 2 333345443      5689999999999999999998888777


Q ss_pred             eE-eecCCCeeEecCC-----CcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcE
Q 023822          158 LL-RVQGRPAAAYDDQ-----GLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHI  230 (276)
Q Consensus       158 ~~-~~~~~~~~~~~~~-----~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  230 (276)
                      .+ -..++..++++|+     .+.+++|+ .| +.++.-+-.....  ........++|.++.|.  |.++|-++.+| |
T Consensus       108 ~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~--~v~l~~~eG~I~~i~W~--g~lIAWand~G-v  181 (846)
T KOG2066|consen  108 QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKD--SVVLSEGEGPIHSIKWR--GNLIAWANDDG-V  181 (846)
T ss_pred             eEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCcc--ceeeecCccceEEEEec--CcEEEEecCCC-c
Confidence            66 3456779999997     24444444 56 8887755433211  22345567899999995  77888888777 8


Q ss_pred             EEEECCCCcEEEEeecCCC---CCCceEEEEECCCCcEE
Q 023822          231 HVLDSFRGTLLSTYNVKPV---SRNSTLEASFSPEGMFV  266 (276)
Q Consensus       231 ~i~d~~~~~~~~~~~~~~~---~~~~v~~~~~s~~g~~l  266 (276)
                      ++||+.+++.+..+.....   .......+.|.++.+++
T Consensus       182 ~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LV  220 (846)
T KOG2066|consen  182 KVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLV  220 (846)
T ss_pred             EEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEE
Confidence            9999999988877763210   12223457787776544

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.79  E-value=6.2e-06  Score=72.48  Aligned_cols=184  Identities=13%  Similarity=0.135  Sum_probs=126.3

Q ss_pred             eceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEec----cC
Q 023822           77 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQ----RA  152 (276)
Q Consensus        77 ~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~----~~  152 (276)
                      ..|.++.|..+...++.+..   .|.|.+-|..+.... ....-...|.+++|+||+..++..+..+++.+-+-    -.
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~---~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~  144 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITA---LGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIA  144 (1265)
T ss_pred             cceEEEEEecccceEEEEec---CCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchh
Confidence            57999999999999998888   999999988776432 22335678999999999999999888888776432    11


Q ss_pred             ceee-------------------eeEee-----------------------cCCCeeEecCCCcEEEEee-----C-CeE
Q 023822          153 EKCQ-------------------GLLRV-----------------------QGRPAAAYDDQGLVFAVAF-----G-GYI  184 (276)
Q Consensus       153 ~~~~-------------------~~~~~-----------------------~~~~~~~~~~~~~~l~~~~-----d-~~i  184 (276)
                      .+.+                   ..++.                       ..-..+.|-.||.+++++.     + +.|
T Consensus       145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rki  224 (1265)
T KOG1920|consen  145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKI  224 (1265)
T ss_pred             ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeE
Confidence            1110                   11111                       1123588999999999865     5 799


Q ss_pred             EEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEee---cCCcEEEEECCCCcEEEEeecCC-CCCCceEEEEEC
Q 023822          185 RMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT---MEGHIHVLDSFRGTLLSTYNVKP-VSRNSTLEASFS  260 (276)
Q Consensus       185 ~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~-~~~~~v~~~~~s  260 (276)
                      ++||.+ +..    ..........-.+++|-|.|..+++-.   .|+.|.+|. ++|-....+.... .....+..++|+
T Consensus       225 rV~drE-g~L----ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~f~l~~p~de~~ve~L~Wn  298 (1265)
T KOG1920|consen  225 RVYDRE-GAL----NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGEFVLPFPLDEKEVEELAWN  298 (1265)
T ss_pred             EEeccc-chh----hcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccccccCCcccccchheeeec
Confidence            999987 322    111112223446799999999888853   466799998 5665544443211 233448999999


Q ss_pred             CCCcEEEEec
Q 023822          261 PEGMFVISGR  270 (276)
Q Consensus       261 ~~g~~l~~~~  270 (276)
                      .++..||+-.
T Consensus       299 s~sdiLAv~~  308 (1265)
T KOG1920|consen  299 SNSDILAVVT  308 (1265)
T ss_pred             CCCCceeeee
Confidence            9999998843

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.75  E-value=3.8e-05  Score=61.75  Aligned_cols=227  Identities=11%  Similarity=0.156  Sum_probs=127.4

Q ss_pred             CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeee-----------------eeceEEEEEeccCCeEEEecc
Q 023822           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSK-----------------KYGVDLVCFTSHPTTVIYSSK   96 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~l~~~~~   96 (276)
                      ...+....|+|+|+.+|... ++.|.+++..+++..+.-...                 -..-..+.|+|++++|+....
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence            56788899999999999874 578999998777544332211                 112357889999999988765


Q ss_pred             CCCCCc-----------------------------------eEEEEccCCceeee--e---cccCcceEEEEeccCCCEE
Q 023822           97 NGWDES-----------------------------------LRLLSLHDNKYLRY--F---KGHHDRVVSLSLCSSKDCF  136 (276)
Q Consensus        97 ~~~d~~-----------------------------------i~~~d~~~~~~~~~--~---~~~~~~i~~~~~~~~~~~l  136 (276)
                      +  +..                                   +.++|+.+++....  .   ..-...+..+.|.++++.|
T Consensus       121 d--~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l  198 (353)
T PF00930_consen  121 D--EREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRL  198 (353)
T ss_dssp             E---TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEE
T ss_pred             C--CcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEE
Confidence            3  222                                   33444444433211  1   1234457889999998844


Q ss_pred             EEe--eCCC---eEEEEeccCceeeeeEeecC------CCeeEec-CCC-cEEEEee-CC--eEEEEecccCCCCCeeee
Q 023822          137 ISG--SLDR---TVLLWDQRAEKCQGLLRVQG------RPAAAYD-DQG-LVFAVAF-GG--YIRMFDARKYEKGPFDIF  200 (276)
Q Consensus       137 ~~~--~~d~---~i~iwd~~~~~~~~~~~~~~------~~~~~~~-~~~-~~l~~~~-d~--~i~~~d~~~~~~~~~~~~  200 (276)
                      +..  .++.   .+.++|..++..........      .....+. +++ .++..+. +|  +|.+++.....     ..
T Consensus       199 ~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-----~~  273 (353)
T PF00930_consen  199 WVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-----PR  273 (353)
T ss_dssp             EEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-----EE
T ss_pred             EEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-----ee
Confidence            433  3332   46677887665544332111      1244443 444 5555554 55  55555655433     22


Q ss_pred             eecCCCCCceE-EEECCCCcEEEE-eecC----CcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecC
Q 023822          201 SVGGDISDANV-VKFSNDGRLMLL-TTME----GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRV  271 (276)
Q Consensus       201 ~~~~~~~~i~~-~~~~~~~~~l~~-~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  271 (276)
                      .+......|.. +.++++++.|+. +..+    ..|..-++..+..+..+...   .+.-..+.|||+|++++....
T Consensus       274 ~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~---~~~~~~~~~Spdg~y~v~~~s  347 (353)
T PF00930_consen  274 QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCE---DGDHYSASFSPDGKYYVDTYS  347 (353)
T ss_dssp             ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTT---SSTTEEEEE-TTSSEEEEEEE
T ss_pred             ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCC---CCCceEEEECCCCCEEEEEEc
Confidence            34444456644 678888766544 4432    24666666634555566532   222268999999998876543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.74  E-value=4.8e-06  Score=68.03  Aligned_cols=186  Identities=13%  Similarity=0.080  Sum_probs=114.3

Q ss_pred             CCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceE
Q 023822           46 SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV  125 (276)
Q Consensus        46 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~  125 (276)
                      +..++.++.++.+..+|.++|+.+-..............  .+..++++..   ++.+.-+|..+++.+..+......+.
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~---~g~l~ald~~tG~~~W~~~~~~~~~~  194 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTS---NGMLQALNESDGAVKWTVNLDVPSLT  194 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECC---CCEEEEEEccCCCEeeeecCCCCccc
Confidence            346677778899999999999887766543221111112  2445666665   89999999999998887653211100


Q ss_pred             E-EEecc--CCCEEEEeeCCCeEEEEeccCceeeeeEeecCC---------CeeEecC---CCcEEEEeeCCeEEEEecc
Q 023822          126 S-LSLCS--SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR---------PAAAYDD---QGLVFAVAFGGYIRMFDAR  190 (276)
Q Consensus       126 ~-~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---------~~~~~~~---~~~~l~~~~d~~i~~~d~~  190 (276)
                      . ..-+|  .+..++.++.++.+..+|..+++..-.......         ..+..+|   ++.+++++.++.+..+|..
T Consensus       195 ~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~  274 (394)
T PRK11138        195 LRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR  274 (394)
T ss_pred             ccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC
Confidence            0 00111  223566777889999999988876544321110         0111122   5666666779999999998


Q ss_pred             cCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEe
Q 023822          191 KYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY  244 (276)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  244 (276)
                      +++.    .......  ....+..  .+..++.++.+|.+..+|..+|+.+-..
T Consensus       275 tG~~----~W~~~~~--~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~  320 (394)
T PRK11138        275 SGQI----VWKREYG--SVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQ  320 (394)
T ss_pred             CCCE----EEeecCC--CccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcc
Confidence            8764    2222111  1111222  3556778889999999999999876543

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.74  E-value=9.1e-06  Score=65.30  Aligned_cols=216  Identities=12%  Similarity=0.109  Sum_probs=118.2

Q ss_pred             cCCCCEEEEee---------cCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCce
Q 023822           43 HKSSSYLVTAS---------DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY  113 (276)
Q Consensus        43 ~~~~~~l~~~~---------~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~  113 (276)
                      |||+++++...         ..+.+.++|+++++....... ...+....|+|+++.++...    ++.|.+++..+++.
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~----~~nly~~~~~~~~~   75 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR----DNNLYLRDLATGQE   75 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE----TTEEEEESSTTSEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe----cCceEEEECCCCCe
Confidence            57788777632         346789999998765544433 66789999999999999997    88999999877744


Q ss_pred             eeee-cc-------c---------CcceEEEEeccCCCEEEEeeCCC-e-------------------------------
Q 023822          114 LRYF-KG-------H---------HDRVVSLSLCSSKDCFISGSLDR-T-------------------------------  144 (276)
Q Consensus       114 ~~~~-~~-------~---------~~~i~~~~~~~~~~~l~~~~~d~-~-------------------------------  144 (276)
                      .+.- .+       -         -+.-..+.|+||+++|+....|. .                               
T Consensus        76 ~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~n  155 (353)
T PF00930_consen   76 TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPN  155 (353)
T ss_dssp             EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS--
T ss_pred             EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcC
Confidence            3321 11       0         11235688999999888665431 1                               


Q ss_pred             ----EEEEeccCceeeeeE-e------ecCCCeeEecCCCc-EEEEee--C---CeEEEEecccCCCCCeeeeeecCCCC
Q 023822          145 ----VLLWDQRAEKCQGLL-R------VQGRPAAAYDDQGL-VFAVAF--G---GYIRMFDARKYEKGPFDIFSVGGDIS  207 (276)
Q Consensus       145 ----i~iwd~~~~~~~~~~-~------~~~~~~~~~~~~~~-~l~~~~--d---~~i~~~d~~~~~~~~~~~~~~~~~~~  207 (276)
                          +.++|+.+++....- .      ..-+..+.|.+++. +++.-.  +   ..+.++|..++...........+--.
T Consensus       156 p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~  235 (353)
T PF00930_consen  156 PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVD  235 (353)
T ss_dssp             -EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSS
T ss_pred             CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCccee
Confidence                223333333221100 0      01123567778877 444333  1   34566677664432222111111112


Q ss_pred             CceEEEEC-CCC-cEEEEeecCCc--EEEEECCCCcEEEEeecCCCCCCceEE-EEECCCCcEEE
Q 023822          208 DANVVKFS-NDG-RLMLLTTMEGH--IHVLDSFRGTLLSTYNVKPVSRNSTLE-ASFSPEGMFVI  267 (276)
Q Consensus       208 ~i~~~~~~-~~~-~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~v~~-~~~s~~g~~l~  267 (276)
                      ......|. +++ .+|.....+|.  |.+++...+.. ..+.   ...-.|.. +.|+++++.|+
T Consensus       236 ~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT---~G~~~V~~i~~~d~~~~~iy  296 (353)
T PF00930_consen  236 VYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLT---SGDWEVTSILGWDEDNNRIY  296 (353)
T ss_dssp             SSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS----SSS-EEEEEEEECTSSEEE
T ss_pred             eecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-eccc---cCceeecccceEcCCCCEEE
Confidence            23355654 555 45555556775  55566555553 3444   24455644 67888876554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.72  E-value=5.1e-09  Score=85.18  Aligned_cols=202  Identities=14%  Similarity=0.149  Sum_probs=136.2

Q ss_pred             CCcEEEEEEcCC--CCEEEEeecCCeEEEEEccCCee--eeeeeeeeeceEEEEEecc-CCeEEEeccC-CCCCceEEEE
Q 023822           34 NGRISSMDFHKS--SSYLVTASDDESIRLYDVTAATC--LKTINSKKYGVDLVCFTSH-PTTVIYSSKN-GWDESLRLLS  107 (276)
Q Consensus        34 ~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~-~~d~~i~~~d  107 (276)
                      ...+.|++++-+  ...++.|..+|.|-+-......-  ......+..++++++|++- .+.|+.+-.. ..|..+.+||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            456788887653  34788999999999887764321  2334567778999999985 4455554321 2367899999


Q ss_pred             ccCC--ceee--eecc-cCcceEEEEeccCCCEEEEeeCCCeEEEEeccCc-eeeeeEeecCCCeeEecC-CCcEEEEee
Q 023822          108 LHDN--KYLR--YFKG-HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE-KCQGLLRVQGRPAAAYDD-QGLVFAVAF  180 (276)
Q Consensus       108 ~~~~--~~~~--~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~-~~~~l~~~~  180 (276)
                      +.++  .+..  .+.. ......+++|..+.+++.+|.....++++|+|.. .....+....+..+..+| ...+++...
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~  215 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS  215 (783)
T ss_pred             cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc
Confidence            9876  2222  2222 2334568889888889999999999999999943 333444555677788888 778888888


Q ss_pred             CCeEEEEe-cccCCCCCeeeeee--cCCCCCceEEEECCCC-cEEEEeec-CCcEEEEECC
Q 023822          181 GGYIRMFD-ARKYEKGPFDIFSV--GGDISDANVVKFSNDG-RLMLLTTM-EGHIHVLDSF  236 (276)
Q Consensus       181 d~~i~~~d-~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~-~~l~~~~~-dg~i~i~d~~  236 (276)
                      |+.|.+|| .++.+. ++.....  ......+..++|+|.. ..+++... .++|+++|+.
T Consensus       216 dg~iAiwD~~rnien-pl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  216 DGDIAIWDTYRNIEN-PLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             cCceeeccchhhhcc-HHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            99999999 444332 2222111  1122358889999953 23555554 4789999975

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.70  E-value=6.7e-05  Score=58.44  Aligned_cols=220  Identities=14%  Similarity=0.112  Sum_probs=133.5

Q ss_pred             EEEEcCCCCEE-EEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeee
Q 023822           39 SMDFHKSSSYL-VTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF  117 (276)
Q Consensus        39 ~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~  117 (276)
                      ...|.++...| .+--..+.|.-|+..+++.. .+... ..+.++.....+..|+++     +..+.+++.+++.....+
T Consensus        29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p-~~~~~~~~~d~~g~Lv~~-----~~g~~~~~~~~~~~~t~~  101 (307)
T COG3386          29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPSP-GGFSSGALIDAGGRLIAC-----EHGVRLLDPDTGGKITLL  101 (307)
T ss_pred             CccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEECC-CCcccceeecCCCeEEEE-----ccccEEEeccCCceeEEe
Confidence            34577766644 45556788889988766432 22222 234555555455556555     455777777655542322


Q ss_pred             c----c-cCcceEEEEeccCCCEEEEeeC-----------CCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEe
Q 023822          118 K----G-HHDRVVSLSLCSSKDCFISGSL-----------DRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVA  179 (276)
Q Consensus       118 ~----~-~~~~i~~~~~~~~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~  179 (276)
                      .    + .....+.....|+|.+.++...           -|.|+.+|. .+..++.+  +....+.++|+|+++.|..+
T Consensus       102 ~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~a  180 (307)
T COG3386         102 AEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVA  180 (307)
T ss_pred             ccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEE
Confidence            1    1 1234567888899986554433           133445554 34444433  24556789999999777777


Q ss_pred             e--CCeEEEEeccc--CCC-CCeeeeeecCCCCCceEEEECCCCcEEEEeecCC-cEEEEECCCCcEEEEeecCCCCCCc
Q 023822          180 F--GGYIRMFDARK--YEK-GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG-HIHVLDSFRGTLLSTYNVKPVSRNS  253 (276)
Q Consensus       180 ~--d~~i~~~d~~~--~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~  253 (276)
                      .  .+.|..|++..  ... ...............-.++...+|.+.+++-.+| .|.+|+.. |+++..+..   ....
T Consensus       181 DT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l---P~~~  256 (307)
T COG3386         181 DTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL---PVKR  256 (307)
T ss_pred             eCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEEC---CCCC
Confidence            6  58888888763  111 1111222333455667788888998776554444 89999977 999999983   4477


Q ss_pred             eEEEEEC-CCCcEEEEec
Q 023822          254 TLEASFS-PEGMFVISGR  270 (276)
Q Consensus       254 v~~~~~s-~~g~~l~~~~  270 (276)
                      +++++|- |+.+.|+..+
T Consensus       257 ~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         257 PTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             CccceEeCCCcCEEEEEe
Confidence            8888885 4555554443

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.69  E-value=4.8e-05  Score=62.16  Aligned_cols=207  Identities=14%  Similarity=0.192  Sum_probs=112.9

Q ss_pred             EEEcCCCCEEEEeecC----------C-eEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEc
Q 023822           40 MDFHKSSSYLVTASDD----------E-SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL  108 (276)
Q Consensus        40 ~~~~~~~~~l~~~~~d----------~-~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~  108 (276)
                      ++.+|.|.-+|....+          . .|.||+. .|+.+..+.-..+.+.++.|..+...+++. .   ||.+++||+
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~-~---dG~v~vy~~  108 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQ-S---DGTVRVYDL  108 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEE-c---CCEEEEEeC
Confidence            4455555555554333          1 5999985 577777776656899999999865555554 4   999999998


Q ss_pred             cCCceeeee-------cccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCce-eeeeEee-cC-------CC----eeE
Q 023822          109 HDNKYLRYF-------KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK-CQGLLRV-QG-------RP----AAA  168 (276)
Q Consensus       109 ~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~-~~-------~~----~~~  168 (276)
                      .... ...+       .-....+....+..+|  ++.-..++.+.+.+--... ....+.. ..       ..    ...
T Consensus       109 ~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~  185 (410)
T PF04841_consen  109 FGEF-QFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPL  185 (410)
T ss_pred             CCce-eechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceE
Confidence            6333 1111       1111222222333345  3333345555444322211 1111100 00       00    011


Q ss_pred             ecCCCc-EEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecC
Q 023822          169 YDDQGL-VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK  247 (276)
Q Consensus       169 ~~~~~~-~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  247 (276)
                      ++.+.. .+....++.+.+.+-...+.       + ...+++..++.||+|+++|.-..+|.+.+.+..-.+.+..+...
T Consensus       186 l~~~~~~~i~~~~g~~i~~i~~~~~~~-------i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~  257 (410)
T PF04841_consen  186 LSSDRVVEILLANGETIYIIDENSFKQ-------I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD  257 (410)
T ss_pred             eecCcceEEEEecCCEEEEEEcccccc-------c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC
Confidence            222332 22223345555444332110       1 12357999999999999999999999999987766677666632


Q ss_pred             CCCCCceEEEEECCCCc
Q 023822          248 PVSRNSTLEASFSPEGM  264 (276)
Q Consensus       248 ~~~~~~v~~~~~s~~g~  264 (276)
                        .......+.|.-+..
T Consensus       258 --~~~~p~~~~WCG~da  272 (410)
T PF04841_consen  258 --SKSPPKQMAWCGNDA  272 (410)
T ss_pred             --cCCCCcEEEEECCCc
Confidence              234556677766543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.69  E-value=5.1e-06  Score=67.76  Aligned_cols=89  Identities=19%  Similarity=0.193  Sum_probs=68.2

Q ss_pred             eEEEEccCCceee---eecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEe
Q 023822          103 LRLLSLHDNKYLR---YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVA  179 (276)
Q Consensus       103 i~~~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  179 (276)
                      -.+|+...++..+   +--..+..+.+++++|+...|+.|+.||+|.+||...+........-.+..++|+|+|.+++++
T Consensus       238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~  317 (545)
T PF11768_consen  238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVG  317 (545)
T ss_pred             EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEE
Confidence            3456655443221   1124678899999999999999999999999999887754444344446689999999999999


Q ss_pred             e-CCeEEEEeccc
Q 023822          180 F-GGYIRMFDARK  191 (276)
Q Consensus       180 ~-d~~i~~~d~~~  191 (276)
                      + .|.+.+||+.-
T Consensus       318 s~qGelQ~FD~AL  330 (545)
T PF11768_consen  318 SEQGELQCFDMAL  330 (545)
T ss_pred             cCCceEEEEEeec
Confidence            8 59999999865

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.68  E-value=3.2e-06  Score=71.58  Aligned_cols=182  Identities=15%  Similarity=0.169  Sum_probs=118.7

Q ss_pred             EEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcc-eEEEEeccCCCEEEEeeCCC-----eEEEEeccCc---
Q 023822           83 CFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDR-VVSLSLCSSKDCFISGSLDR-----TVLLWDQRAE---  153 (276)
Q Consensus        83 ~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~---  153 (276)
                      +|++.+..++.|+.   +|.|.+++- ..+..+.++.+... |..+....+.++|++.+.|+     .+++||++..   
T Consensus        30 c~~s~~~~vvigt~---~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n  105 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTA---DGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN  105 (933)
T ss_pred             EEcCCCceEEEeec---cccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence            56778888999988   898888873 33444666666666 44444444446788777764     4899998743   


Q ss_pred             ---eeeeeE---------eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcE
Q 023822          154 ---KCQGLL---------RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRL  220 (276)
Q Consensus       154 ---~~~~~~---------~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  220 (276)
                         ++....         ...++.+++.+.+-+.+++|. +|.|..+.=.-.+.......-......+|+.+++..+++.
T Consensus       106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s  185 (933)
T KOG2114|consen  106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS  185 (933)
T ss_pred             CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce
Confidence               233111         123456888999989999998 8999988643222211222223345579999999999987


Q ss_pred             EEEeecCCcEEEEECCCCcE-EEEeecCCCCCCceEEEEECCCCcEEEEecC
Q 023822          221 MLLTTMEGHIHVLDSFRGTL-LSTYNVKPVSRNSTLEASFSPEGMFVISGRV  271 (276)
Q Consensus       221 l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  271 (276)
                      ++....-..|.+|.+....+ ...+.   .++.+.++..+++...-+++++.
T Consensus       186 ~lFv~Tt~~V~~y~l~gr~p~~~~ld---~~G~~lnCss~~~~t~qfIca~~  234 (933)
T KOG2114|consen  186 VLFVATTEQVMLYSLSGRTPSLKVLD---NNGISLNCSSFSDGTYQFICAGS  234 (933)
T ss_pred             eEEEEecceeEEEEecCCCcceeeec---cCCccceeeecCCCCccEEEecC
Confidence            44444556799999874442 23344   57788888888876653444443

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.63  E-value=5.1e-05  Score=61.34  Aligned_cols=228  Identities=13%  Similarity=0.105  Sum_probs=131.0

Q ss_pred             cEEEEEEcCCCCEEEEeecCCeEEEEEccCCeee-------------------------------------------eee
Q 023822           36 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCL-------------------------------------------KTI   72 (276)
Q Consensus        36 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-------------------------------------------~~~   72 (276)
                      .|+.+.|.++..-|++|...|.|.||.....+.-                                           ..+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            4889999999889999999999999876432111                                           111


Q ss_pred             eeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeee--cc------cCcceEEEEecc-----CC---CEE
Q 023822           73 NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF--KG------HHDRVVSLSLCS-----SK---DCF  136 (276)
Q Consensus        73 ~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~--~~------~~~~i~~~~~~~-----~~---~~l  136 (276)
                      ....++|++++.+ |=.++++|..   +|.+.|.|++....+..-  ..      ....++++.|..     |+   -.+
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy~---~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L  158 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGYE---SGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL  158 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEET---TSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred             eccCCcEeEEecC-CCcEEEEEec---CCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence            2235678888886 6668888888   999999999887766542  22      234677888862     33   378


Q ss_pred             EEeeCCCeEEEEeccC---ceeeeeE------eecCCCee-EecC---------------------CCcEEEEeeCCeEE
Q 023822          137 ISGSLDRTVLLWDQRA---EKCQGLL------RVQGRPAA-AYDD---------------------QGLVFAVAFGGYIR  185 (276)
Q Consensus       137 ~~~~~d~~i~iwd~~~---~~~~~~~------~~~~~~~~-~~~~---------------------~~~~l~~~~d~~i~  185 (276)
                      ++|...|.+.+|.+.-   +.....+      ....+..+ .++.                     -..+++++++..++
T Consensus       159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ir  238 (395)
T PF08596_consen  159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIR  238 (395)
T ss_dssp             EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEE
T ss_pred             EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceE
Confidence            8999999999998752   1111111      11112111 1211                     12367777799999


Q ss_pred             EEecccCCCCCeeeeeecCCCCCceEEEE-----CCCCcEEEEeecCCcEEEEECCCCcEEEEeecCC-CCCCceEEEEE
Q 023822          186 MFDARKYEKGPFDIFSVGGDISDANVVKF-----SNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP-VSRNSTLEASF  259 (276)
Q Consensus       186 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~v~~~~~  259 (276)
                      ++...+.+.    .............+.+     ...+..|++-..+|.|++|.+..-+.+....... .....+....+
T Consensus       239 v~~~~~~k~----~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssi  314 (395)
T PF08596_consen  239 VFKPPKSKG----AHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSI  314 (395)
T ss_dssp             EE-TT---E----EEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE
T ss_pred             EEeCCCCcc----cceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEE
Confidence            999876543    2222222122233444     2356778888899999999999999988887421 12234556778


Q ss_pred             CCCCcEEEEecC
Q 023822          260 SPEGMFVISGRV  271 (276)
Q Consensus       260 s~~g~~l~~~~~  271 (276)
                      +++|..++-.+.
T Consensus       315 s~~Gdi~~~~gp  326 (395)
T PF08596_consen  315 SRNGDIFYWTGP  326 (395)
T ss_dssp             -TTS-EEEE-SS
T ss_pred             CCCCCEEEEeCc
Confidence            899988766554

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.61  E-value=8.9e-05  Score=58.86  Aligned_cols=214  Identities=11%  Similarity=0.076  Sum_probs=121.7

Q ss_pred             CeEEEEEccCCeeeeeeeeee-eceEEE---EEecc----CCeEEEeccCC------CC-CceEEEEccCC----ceeee
Q 023822           56 ESIRLYDVTAATCLKTINSKK-YGVDLV---CFTSH----PTTVIYSSKNG------WD-ESLRLLSLHDN----KYLRY  116 (276)
Q Consensus        56 ~~i~iwd~~~~~~~~~~~~~~-~~v~~~---~~~~~----~~~l~~~~~~~------~d-~~i~~~d~~~~----~~~~~  116 (276)
                      ..|++.|..+.+.+..+.-.. ..+.++   .+..+    ..++++|+.-.      .. |.|.++++...    ..+..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            358888888887776665332 234433   33322    45677665410      02 89999999884    12222


Q ss_pred             e--cccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCce-eeeeE-eecCCCeeEecCCCcEEEEee-CCeEEEEeccc
Q 023822          117 F--KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK-CQGLL-RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARK  191 (276)
Q Consensus       117 ~--~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~-~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~  191 (276)
                      +  ....++|++++-- ++. |+.+. ++.|.+|++...+ ....- .............+.+++++. ...+.++..+.
T Consensus        82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~  158 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDE  158 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEET
T ss_pred             EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEc
Confidence            1  2357888888765 444 44444 5899999999887 33332 334445555555566777776 67777775554


Q ss_pred             CCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCC-------Cc-EEE-EeecCCCCCCceEEE---EE
Q 023822          192 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR-------GT-LLS-TYNVKPVSRNSTLEA---SF  259 (276)
Q Consensus       192 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-------~~-~~~-~~~~~~~~~~~v~~~---~~  259 (276)
                      .. ..+...........++++.|-++++.++.+..+|.+.++....       +. .+. ....+  ....|+++   ++
T Consensus       159 ~~-~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~--lg~~v~~~~~~~l  235 (321)
T PF03178_consen  159 EN-NKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH--LGDIVNSFRRGSL  235 (321)
T ss_dssp             TT-E-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE---SS-EEEEEE--S
T ss_pred             cC-CEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE--CCCccceEEEEEe
Confidence            11 1233344444556788888886767899999999999998652       22 222 22211  45667777   55


Q ss_pred             CCC--C------cEEEEecCCCCC
Q 023822          260 SPE--G------MFVISGRVSPFS  275 (276)
Q Consensus       260 s~~--g------~~l~~~~~dg~v  275 (276)
                      .|.  +      ..++.++.+|.+
T Consensus       236 ~~~~~~~~~~~~~~i~~~T~~G~I  259 (321)
T PF03178_consen  236 IPRSGSSESPNRPQILYGTVDGSI  259 (321)
T ss_dssp             S--SSSS-TTEEEEEEEEETTS-E
T ss_pred             eecCCCCcccccceEEEEecCCEE
Confidence            552  2      247777777753

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.60  E-value=2.7e-06  Score=70.50  Aligned_cols=117  Identities=17%  Similarity=0.165  Sum_probs=89.3

Q ss_pred             CCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeee-eeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCC
Q 023822           33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTI-NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN  111 (276)
Q Consensus        33 h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~  111 (276)
                      |...|.--++...+++++.|+.-|.+++|+-..++....- .+..+.+..+..+++..+++.++.   .|.|.++-+..+
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~---~g~V~v~ql~~~  108 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTA---SGRVSVFQLNKE  108 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcC---CceEEeehhhcc
Confidence            4455666667778899999999999999997665543222 224456677788888888888887   899999988764


Q ss_pred             ceeee-----e-cccCcceEEEEeccCCCEEEEeeCCCeEEEEeccC
Q 023822          112 KYLRY-----F-KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA  152 (276)
Q Consensus       112 ~~~~~-----~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~  152 (276)
                      .+...     . +.|...|++++|++++..+++|...|+|.+-.+..
T Consensus       109 ~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  109 LPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             CCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            33211     1 23788999999999999999999999999888877

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.58  E-value=0.00021  Score=58.02  Aligned_cols=230  Identities=13%  Similarity=0.110  Sum_probs=148.8

Q ss_pred             cEEEEEEcCCCCEEEEee-cCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCcee
Q 023822           36 RISSMDFHKSSSYLVTAS-DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL  114 (276)
Q Consensus        36 ~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~  114 (276)
                      ....+...+++..+.... ....+...+...................++.++.+..+.....+  +..|.+.|..+.+..
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~--~~~v~vid~~~~~~~  109 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGD--SNTVSVIDTATNTVL  109 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCC--CCeEEEEcCccccee
Confidence            345577788775544333 22245555544222222111111345578888888866666552  789999998877776


Q ss_pred             eeecccCcceEEEEeccCCCEEEEeeC---CCeEEEEeccCceeeeeEeec-CCCeeEecCCCcEEEEee--CCeEEEEe
Q 023822          115 RYFKGHHDRVVSLSLCSSKDCFISGSL---DRTVLLWDQRAEKCQGLLRVQ-GRPAAAYDDQGLVFAVAF--GGYIRMFD  188 (276)
Q Consensus       115 ~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~--d~~i~~~d  188 (276)
                      .....-. ....++++|+++.+..+..   ++++.+.|-.+.+........ ....++++|++..+....  ++.|.+.|
T Consensus       110 ~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~  188 (381)
T COG3391         110 GSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVID  188 (381)
T ss_pred             eEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEe
Confidence            6654333 5678999999986666655   688999999988888776332 236899999998666665  79999999


Q ss_pred             cccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecC---CcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcE
Q 023822          189 ARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME---GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF  265 (276)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  265 (276)
                      ........-..............+.++|+|+++++....   +.+...|..++.....-... +.. ....+..+|+|++
T Consensus       189 ~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~-~~~-~~~~v~~~p~g~~  266 (381)
T COG3391         189 TSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV-GSG-APRGVAVDPAGKA  266 (381)
T ss_pred             CCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc-ccC-CCCceeECCCCCE
Confidence            776432100000011222345679999999977665443   58999999888887762211 122 5667899999998


Q ss_pred             EEEec
Q 023822          266 VISGR  270 (276)
Q Consensus       266 l~~~~  270 (276)
                      +.+..
T Consensus       267 ~yv~~  271 (381)
T COG3391         267 AYVAN  271 (381)
T ss_pred             EEEEe
Confidence            87763

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.57  E-value=2.2e-05  Score=64.33  Aligned_cols=166  Identities=11%  Similarity=0.108  Sum_probs=91.7

Q ss_pred             eeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCce
Q 023822           75 KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK  154 (276)
Q Consensus        75 ~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  154 (276)
                      .......+.++|+++.+++++    +|.-.++.....+...     .+.-....|.+. +.+|+-...++|.++.--+.+
T Consensus        31 ~~~~p~~ls~npngr~v~V~g----~geY~iyt~~~~r~k~-----~G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~  100 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLVCG----DGEYEIYTALAWRNKA-----FGSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNE  100 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEEEE----TTEEEEEETTTTEEEE-----EEE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-
T ss_pred             CCcCCeeEEECCCCCEEEEEc----CCEEEEEEccCCcccc-----cCceeEEEEecC-ccEEEEECCCeEEEEEcCccc
Confidence            334578899999999999976    8888888843333221     234466889884 457777778899996322222


Q ss_pred             eeeeEeecCCCeeEecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEE
Q 023822          155 CQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD  234 (276)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  234 (276)
                      ....+.... ..-.+-+ |.+|....++.|.+||+.+.+.    +......  +|..+.|+++|.+++..+.+ .+.+++
T Consensus       101 ~~k~i~~~~-~~~~If~-G~LL~~~~~~~i~~yDw~~~~~----i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~  171 (443)
T PF04053_consen  101 VVKSIKLPF-SVEKIFG-GNLLGVKSSDFICFYDWETGKL----IRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILK  171 (443)
T ss_dssp             TT-----SS--EEEEE--SSSEEEEETTEEEEE-TTT--E----EEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred             cceEEcCCc-ccceEEc-CcEEEEECCCCEEEEEhhHcce----eeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEE
Confidence            222332221 1112222 8888888888999999998653    4444332  48999999999999988766 677777


Q ss_pred             CCCC-----------cEEEEeecCCCCCCceEEEEECCC
Q 023822          235 SFRG-----------TLLSTYNVKPVSRNSTLEASFSPE  262 (276)
Q Consensus       235 ~~~~-----------~~~~~~~~~~~~~~~v~~~~~s~~  262 (276)
                      ....           ..+..+.   .....|.+.+|..|
T Consensus       172 ~~~~~~~~~~~~g~e~~f~~~~---E~~~~IkSg~W~~d  207 (443)
T PF04053_consen  172 YNLEAVAAIPEEGVEDAFELIH---EISERIKSGCWVED  207 (443)
T ss_dssp             E-HHHHHHBTTTB-GGGEEEEE---EE-S--SEEEEETT
T ss_pred             ecchhcccccccCchhceEEEE---EecceeEEEEEEcC
Confidence            4332           0222332   12467778888766

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.55  E-value=4.7e-05  Score=63.78  Aligned_cols=218  Identities=10%  Similarity=0.048  Sum_probs=123.8

Q ss_pred             CCCEEEEeec-CCeEEEEEccCCeeeeeeeee-eeceEEEEE-------------------eccCCeEEEeccCCCCCce
Q 023822           45 SSSYLVTASD-DESIRLYDVTAATCLKTINSK-KYGVDLVCF-------------------TSHPTTVIYSSKNGWDESL  103 (276)
Q Consensus        45 ~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~-------------------~~~~~~l~~~~~~~~d~~i  103 (276)
                      ||++|..-.. +..|-.-+++..++-+.+... ...+..+++                   .|+++.+....  .+.+.+
T Consensus       140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~--ey~~~v  217 (635)
T PRK02888        140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPK--KYRSLF  217 (635)
T ss_pred             ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeeccc--ceeEEE
Confidence            6778877653 455666666655554443321 122333333                   33444433222  235677


Q ss_pred             EEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCC----CeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEe
Q 023822          104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLD----RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVA  179 (276)
Q Consensus       104 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  179 (276)
                      .+.|.++.+...++.- .+....++++|+++++++.+.+    .++..-+.........+....  ...+.++|++... 
T Consensus       218 SvID~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~--iea~vkdGK~~~V-  293 (635)
T PRK02888        218 TAVDAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR--IEEAVKAGKFKTI-  293 (635)
T ss_pred             EEEECccceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH--HHHhhhCCCEEEE-
Confidence            7888887777666653 2344678899999988887642    233333333322222221111  1234456766655 


Q ss_pred             eCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEee-cCCcEEEEECCCCcE------------EEEeec
Q 023822          180 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGTL------------LSTYNV  246 (276)
Q Consensus       180 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~------------~~~~~~  246 (276)
                      .++.|.+.|.++...........-.-......+.++|||+++++++ .+..|.|+|+.+.+.            ..+.. 
T Consensus       294 ~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve-  372 (635)
T PRK02888        294 GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE-  372 (635)
T ss_pred             CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec-
Confidence            3678999998871100001222212334677899999999987765 588999999987553            34443 


Q ss_pred             CCCCCCceEEEEECCCCcEEEEecCC
Q 023822          247 KPVSRNSTLEASFSPEGMFVISGRVS  272 (276)
Q Consensus       247 ~~~~~~~v~~~~~s~~g~~l~~~~~d  272 (276)
                         ........+|.++|....+--.|
T Consensus       373 ---vGlGPLHTaFDg~G~aytslf~d  395 (635)
T PRK02888        373 ---LGLGPLHTAFDGRGNAYTTLFLD  395 (635)
T ss_pred             ---cCCCcceEEECCCCCEEEeEeec
Confidence               23344567899998765554443

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.53  E-value=7.2e-07  Score=72.52  Aligned_cols=75  Identities=17%  Similarity=0.248  Sum_probs=63.3

Q ss_pred             cCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCC
Q 023822           32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN  111 (276)
Q Consensus        32 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~  111 (276)
                      .....|.|++++|+...|+.|+.||.|.+||...+..  .+....-..+.++|+|++..+++++.   .|.+.+||+.-.
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~---qGelQ~FD~ALs  331 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSE---QGELQCFDMALS  331 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcC---CceEEEEEeecC
Confidence            4678899999999999999999999999999866532  23334456889999999999999998   899999998644

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.51  E-value=0.00025  Score=55.17  Aligned_cols=227  Identities=11%  Similarity=0.060  Sum_probs=138.1

Q ss_pred             EEEEcCCCCEEEEee----------cCCeEEEEEccCCeeeeeeeeeee-------ceEEEEEeccCCeEEEeccCCCCC
Q 023822           39 SMDFHKSSSYLVTAS----------DDESIRLYDVTAATCLKTINSKKY-------GVDLVCFTSHPTTVIYSSKNGWDE  101 (276)
Q Consensus        39 ~~~~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~~~~~d~  101 (276)
                      .+..+|+++.+++++          ..-.|.+||..+-.+..++.....       ....++++.+++++++.... ...
T Consensus        40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~T-Pa~  118 (342)
T PF06433_consen   40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFT-PAT  118 (342)
T ss_dssp             EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEES-SSE
T ss_pred             ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccC-CCC
Confidence            366789999888754          234689999999888776654332       22346788888888776541 267


Q ss_pred             ceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEecc-CceeeeeE----eecC---CCeeEec-CC
Q 023822          102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR-AEKCQGLL----RVQG---RPAAAYD-DQ  172 (276)
Q Consensus       102 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~----~~~~---~~~~~~~-~~  172 (276)
                      .|.+.|+..++.+..+.. ++. ..+ +-..++-|.+.|.||++.-..+. .++.....    ....   ...-++. ..
T Consensus       119 SVtVVDl~~~kvv~ei~~-PGC-~~i-yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~  195 (342)
T PF06433_consen  119 SVTVVDLAAKKVVGEIDT-PGC-WLI-YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDG  195 (342)
T ss_dssp             EEEEEETTTTEEEEEEEG-TSE-EEE-EEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTT
T ss_pred             eEEEEECCCCceeeeecC-CCE-EEE-EecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCC
Confidence            788999998888877652 222 111 21122458888899999988887 34433221    1111   1122233 34


Q ss_pred             CcEEEEeeCCeEEEEecccCCCCCeeeeeecC--------CCCCceEEEECCCCcEEEEeec---CC-------cEEEEE
Q 023822          173 GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGG--------DISDANVVKFSNDGRLMLLTTM---EG-------HIHVLD  234 (276)
Q Consensus       173 ~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~---dg-------~i~i~d  234 (276)
                      ++++..+.+|.|+-.|+............+..        .++...-+++++..+.|++.-.   ++       .|-++|
T Consensus       196 ~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D  275 (342)
T PF06433_consen  196 GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYD  275 (342)
T ss_dssp             TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEE
T ss_pred             CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEE
Confidence            56777888999999998775422222222110        1223445788876555554321   22       488899


Q ss_pred             CCCCcEEEEeecCCCCCCceEEEEECCCCc-EEEEe-cCCC
Q 023822          235 SFRGTLLSTYNVKPVSRNSTLEASFSPEGM-FVISG-RVSP  273 (276)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~-~~dg  273 (276)
                      +.+++.+.++.    ...++.+++.+.+.+ +|++. ..++
T Consensus       276 ~~t~krv~Ri~----l~~~~~Si~Vsqd~~P~L~~~~~~~~  312 (342)
T PF06433_consen  276 LKTHKRVARIP----LEHPIDSIAVSQDDKPLLYALSAGDG  312 (342)
T ss_dssp             TTTTEEEEEEE----EEEEESEEEEESSSS-EEEEEETTTT
T ss_pred             CCCCeEEEEEe----CCCccceEEEccCCCcEEEEEcCCCC
Confidence            99999999998    456788999999875 55443 3344

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.45  E-value=3e-05  Score=67.12  Aligned_cols=132  Identities=10%  Similarity=0.078  Sum_probs=93.3

Q ss_pred             ecCCeEEEEEccCCeeeeeeeeeeec-eEEEEEecc-------CCeEEEeccCCCCCceEEEEccCCc--eeee-e--cc
Q 023822           53 SDDESIRLYDVTAATCLKTINSKKYG-VDLVCFTSH-------PTTVIYSSKNGWDESLRLLSLHDNK--YLRY-F--KG  119 (276)
Q Consensus        53 ~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~-------~~~l~~~~~~~~d~~i~~~d~~~~~--~~~~-~--~~  119 (276)
                      .....|+-.|++.|+.+..+..+... |..  +.|+       ....+.|-.   +..+..||.+-..  .+.. .  ..
T Consensus       501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls---~n~lfriDpR~~~~k~v~~~~k~Y~  575 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLS---DNSLFRIDPRLSGNKLVDSQSKQYS  575 (794)
T ss_pred             CCCCceEEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCceEEEEC---CCceEEeccCCCCCceeeccccccc
Confidence            34578999999999999999887643 444  4443       233445555   8999999987542  2211 1  12


Q ss_pred             cCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEeeCCeEEEEecc
Q 023822          120 HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAFGGYIRMFDAR  190 (276)
Q Consensus       120 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~  190 (276)
                      ......|++-..+| +||+|+.+|.|++||--..+....+  -+.++..+..+.||+++++.++..+.+++..
T Consensus       576 ~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~  647 (794)
T PF08553_consen  576 SKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTL  647 (794)
T ss_pred             cCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence            34457777776666 6999999999999994332222222  3567889999999999999999999999864

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=3.8e-06  Score=65.17  Aligned_cols=162  Identities=12%  Similarity=0.145  Sum_probs=103.0

Q ss_pred             eEEEEccCCceeeeecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCceeeeeE-eecCCCeeEecCCC-cEEEEe
Q 023822          103 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQG-LVFAVA  179 (276)
Q Consensus       103 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~-~~l~~~  179 (276)
                      +++.+..+.+..+.+..+...|.+++|+|..+ ++..++.+.+|++.|+++......+ ....+.+++|+-+. +++.+|
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaG  254 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAG  254 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEe
Confidence            67777666666777778889999999999877 7889999999999999999888777 34567789998776 455555


Q ss_pred             e-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEE------CCCCcEEEEeecCCcEEEEECC--CCcEEEEeecCCCC
Q 023822          180 F-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKF------SNDGRLMLLTTMEGHIHVLDSF--RGTLLSTYNVKPVS  250 (276)
Q Consensus       180 ~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~  250 (276)
                      . +|.|.+||++..+.... ...-.....+|..++.      .+.|.+|+..+.+  +..|++.  .+......+.  +.
T Consensus       255 l~nG~VlvyD~R~~~~~~~-e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlel--e~  329 (463)
T KOG1645|consen  255 LQNGMVLVYDMRQPEGPLM-ELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLEL--EP  329 (463)
T ss_pred             ccCceEEEEEccCCCchHh-hhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCccccc--CC
Confidence            5 79999999998664221 1111112234444332      2334455544443  4566543  2222222221  23


Q ss_pred             CCceEEEEECCCC-cEEEEe
Q 023822          251 RNSTLEASFSPEG-MFVISG  269 (276)
Q Consensus       251 ~~~v~~~~~s~~g-~~l~~~  269 (276)
                      .+...+++..+-. ..|++.
T Consensus       330 pG~cismqy~~~snh~l~ty  349 (463)
T KOG1645|consen  330 PGICISMQYHGVSNHLLLTY  349 (463)
T ss_pred             CcceeeeeecCccceEEEEe
Confidence            5566666666633 334443

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.42  E-value=0.00038  Score=53.98  Aligned_cols=139  Identities=11%  Similarity=0.108  Sum_probs=85.2

Q ss_pred             CCCEEEEeecCCeEEEEEccCC-eeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeee------
Q 023822           45 SSSYLVTASDDESIRLYDVTAA-TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF------  117 (276)
Q Consensus        45 ~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~------  117 (276)
                      .++.|+.|+.+| +.+++.... +......  ...|..+...++-+.+++-+    |+.+.++++..-.....-      
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs----d~~l~~~~L~~l~~~~~~~~~~~~   78 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS----DGQLYVYDLDSLEPVSTSAPLAFP   78 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc----CCccEEEEchhhcccccccccccc
Confidence            578899999998 899998333 3333222  22399999999888888887    899999998765433311      


Q ss_pred             --------cccCcceEEEE--eccCCCEEEEeeCCCeEEEEeccCc-----eeeeeEe-ecCCCeeEecCCCcEEEEeeC
Q 023822          118 --------KGHHDRVVSLS--LCSSKDCFISGSLDRTVLLWDQRAE-----KCQGLLR-VQGRPAAAYDDQGLVFAVAFG  181 (276)
Q Consensus       118 --------~~~~~~i~~~~--~~~~~~~l~~~~~d~~i~iwd~~~~-----~~~~~~~-~~~~~~~~~~~~~~~l~~~~d  181 (276)
                              ......+...+  -...+...+......+|.+|.....     +..+.+. ...+..+.|.  +..++.+..
T Consensus        79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~  156 (275)
T PF00780_consen   79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTS  156 (275)
T ss_pred             ccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeC
Confidence                    11222344444  1123333333444558988887653     3444442 3445567777  555666656


Q ss_pred             CeEEEEecccC
Q 023822          182 GYIRMFDARKY  192 (276)
Q Consensus       182 ~~i~~~d~~~~  192 (276)
                      +...+.|+.++
T Consensus       157 ~~f~~idl~~~  167 (275)
T PF00780_consen  157 KGFYLIDLNTG  167 (275)
T ss_pred             CceEEEecCCC
Confidence            66777777754

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.42  E-value=0.0003  Score=52.09  Aligned_cols=141  Identities=12%  Similarity=0.092  Sum_probs=96.0

Q ss_pred             CCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceE
Q 023822           46 SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV  125 (276)
Q Consensus        46 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~  125 (276)
                      ..+++.|+..+.+.--|..+|+...+-.. ..++.+-+.- -+++++.+..   .|.+++.+..++...+.+..-..-=.
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy---~g~lYfl~~~tGs~~w~f~~~~~vk~   97 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCY---SGGLYFLCVKTGSQIWNFVILETVKV   97 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEc---cCcEEEEEecchhheeeeeehhhhcc
Confidence            35778888889898889988886644321 1123222222 4677889988   99999999999987777654332222


Q ss_pred             EEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecCC--CeeEecC-CCcEEEEeeCCeEEEEeccc
Q 023822          126 SLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAAAYDD-QGLVFAVAFGGYIRMFDARK  191 (276)
Q Consensus       126 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~-~~~~l~~~~d~~i~~~d~~~  191 (276)
                      .....+++..+..++.|++.+..|.++..++...+..+.  ..-++.| ++.++++...|.+.--....
T Consensus        98 ~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~  166 (354)
T KOG4649|consen   98 RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNP  166 (354)
T ss_pred             ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCC
Confidence            344567899999999999999999999988877643332  2334555 55666666666655544443

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.40  E-value=0.00041  Score=58.32  Aligned_cols=185  Identities=16%  Similarity=0.223  Sum_probs=111.4

Q ss_pred             cCCeEEEEEccCCeeeeeeeeeeec--------------------e-EEEEEeccCCeEEEeccCC--------------
Q 023822           54 DDESIRLYDVTAATCLKTINSKKYG--------------------V-DLVCFTSHPTTVIYSSKNG--------------   98 (276)
Q Consensus        54 ~d~~i~iwd~~~~~~~~~~~~~~~~--------------------v-~~~~~~~~~~~l~~~~~~~--------------   98 (276)
                      .++.+..+|.++|+.+-.+......                    + ...++.+.+..++++..++              
T Consensus       173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~  252 (488)
T cd00216         173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDN  252 (488)
T ss_pred             CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCC
Confidence            3678899999999887766542110                    1 1234444566677776421              


Q ss_pred             -CCCceEEEEccCCceeeeecccCcceE------EEEec----cCCC---EEEEeeCCCeEEEEeccCceeeeeEeecCC
Q 023822           99 -WDESLRLLSLHDNKYLRYFKGHHDRVV------SLSLC----SSKD---CFISGSLDRTVLLWDQRAEKCQGLLRVQGR  164 (276)
Q Consensus        99 -~d~~i~~~d~~~~~~~~~~~~~~~~i~------~~~~~----~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  164 (276)
                       +++.|.-+|..+++....++.-.....      ...+.    -++.   .++.++.+|.+...|.++++.+-..... .
T Consensus       253 ~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-~  331 (488)
T cd00216         253 LYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-E  331 (488)
T ss_pred             CceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-c
Confidence             123799999999998887642111111      01111    1333   5778888999999999999887665332 1


Q ss_pred             CeeEecCCCcEEEEe------------------eCCeEEEEecccCCCCCeeeeeecCC--C------CCc--eEEEECC
Q 023822          165 PAAAYDDQGLVFAVA------------------FGGYIRMFDARKYEKGPFDIFSVGGD--I------SDA--NVVKFSN  216 (276)
Q Consensus       165 ~~~~~~~~~~~l~~~------------------~d~~i~~~d~~~~~~~~~~~~~~~~~--~------~~i--~~~~~~~  216 (276)
                      ..++.+| +.+++..                  .++.+.-.|..+++.    +......  .      .+.  ..++.  
T Consensus       332 ~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~----~W~~~~~~~~~~~~~g~~~~~~~~~~--  404 (488)
T cd00216         332 QPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKV----VWEKREGTIRDSWNIGFPHWGGSLAT--  404 (488)
T ss_pred             cccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcE----eeEeeCCccccccccCCcccCcceEe--
Confidence            1233444 3333321                  246788888877664    2222111  0      111  11222  


Q ss_pred             CCcEEEEeecCCcEEEEECCCCcEEEEeec
Q 023822          217 DGRLMLLTTMEGHIHVLDSFRGTLLSTYNV  246 (276)
Q Consensus       217 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  246 (276)
                      .+..|++++.||.|+.+|.++|+.+-+++.
T Consensus       405 ~g~~v~~g~~dG~l~ald~~tG~~lW~~~~  434 (488)
T cd00216         405 AGNLVFAGAADGYFRAFDATTGKELWKFRT  434 (488)
T ss_pred             cCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence            456788899999999999999999988873

The alignment model contains an 8-bladed beta-propeller.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=98.37  E-value=0.00069  Score=54.32  Aligned_cols=226  Identities=13%  Similarity=0.096  Sum_probs=106.2

Q ss_pred             CCCEEEEee-cCCeEEEEEccC----Ceeeeeeee---ee----eceEEEEEeccCCeEEEeccC---CCCCceEEEEcc
Q 023822           45 SSSYLVTAS-DDESIRLYDVTA----ATCLKTINS---KK----YGVDLVCFTSHPTTVIYSSKN---GWDESLRLLSLH  109 (276)
Q Consensus        45 ~~~~l~~~~-~d~~i~iwd~~~----~~~~~~~~~---~~----~~v~~~~~~~~~~~l~~~~~~---~~d~~i~~~d~~  109 (276)
                      +.++|+..+ ..+.|+|.|+.+    .+..+.++.   +.    .....+..-|+++.++++-.+   +.-|-+.++|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            445676665 778999999873    344444432   11    223334445678777775331   124678888888


Q ss_pred             CCceeeeeccc---CcceEEEEeccCCCEEEEeeC--------------------CCeEEEEeccCceeeeeEeecC---
Q 023822          110 DNKYLRYFKGH---HDRVVSLSLCSSKDCFISGSL--------------------DRTVLLWDQRAEKCQGLLRVQG---  163 (276)
Q Consensus       110 ~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~--------------------d~~i~iwd~~~~~~~~~~~~~~---  163 (276)
                      +.+....+...   ...-..+.|.|..+.++|...                    ..++.+||+.+.+.++.+....   
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~  245 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ  245 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence            77776666532   233467778888888877652                    3589999999999999985442   


Q ss_pred             -CCeeEe--cCCCcEEEEee--CCeEEEEec-ccCCCCCeeeeeecC-----------------CCCCceEEEECCCCcE
Q 023822          164 -RPAAAY--DDQGLVFAVAF--GGYIRMFDA-RKYEKGPFDIFSVGG-----------------DISDANVVKFSNDGRL  220 (276)
Q Consensus       164 -~~~~~~--~~~~~~l~~~~--d~~i~~~d~-~~~~~~~~~~~~~~~-----------------~~~~i~~~~~~~~~~~  220 (276)
                       .-.+.|  .|+...-.++.  ..+|..|-- +.++-....+..+..                 -..-|+.|.+|.|.++
T Consensus       246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf  325 (461)
T PF05694_consen  246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF  325 (461)
T ss_dssp             EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred             ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence             224444  44443333333  566665544 222100011111111                 0235789999999999


Q ss_pred             EEEee-cCCcEEEEECCCCc---EEEEeecC-------------CCCCCceEEEEECCCCcEEEEec
Q 023822          221 MLLTT-MEGHIHVLDSFRGT---LLSTYNVK-------------PVSRNSTLEASFSPEGMFVISGR  270 (276)
Q Consensus       221 l~~~~-~dg~i~i~d~~~~~---~~~~~~~~-------------~~~~~~v~~~~~s~~g~~l~~~~  270 (276)
                      |+... .+|.|+.||+.+..   +..++...             ....+...-+..|-||++|+..+
T Consensus       326 LYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  326 LYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             EEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred             EEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence            98876 68999999997643   23222210             01123457788999999887654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.36  E-value=0.00093  Score=55.13  Aligned_cols=224  Identities=13%  Similarity=0.094  Sum_probs=121.7

Q ss_pred             EEEEEEcCCCCEEEEe-ecCC----eEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCC--------CCce
Q 023822           37 ISSMDFHKSSSYLVTA-SDDE----SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW--------DESL  103 (276)
Q Consensus        37 v~~~~~~~~~~~l~~~-~~d~----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~--------d~~i  103 (276)
                      +....++|+++++|.+ +..|    .++++|+++++.+...-... ....+.|.++++.++.......        ...|
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            4467899999998855 3333    69999999997765432211 2233999999988877765321        3347


Q ss_pred             EEEEccCCcee--eeecccCcc--eEEEEeccCCCEEEEeeC---C-CeEEEEeccCc----eeeeeE-e-ecCCCeeEe
Q 023822          104 RLLSLHDNKYL--RYFKGHHDR--VVSLSLCSSKDCFISGSL---D-RTVLLWDQRAE----KCQGLL-R-VQGRPAAAY  169 (276)
Q Consensus       104 ~~~d~~~~~~~--~~~~~~~~~--i~~~~~~~~~~~l~~~~~---d-~~i~iwd~~~~----~~~~~~-~-~~~~~~~~~  169 (276)
                      +.|.+.+....  ..+......  ...+..++++++++....   + ..+.+.|+...    .....+ . ........-
T Consensus       205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~  284 (414)
T PF02897_consen  205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD  284 (414)
T ss_dssp             EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred             EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence            78887766432  334333332  567888999997665433   2 35788888764    222222 2 222323233


Q ss_pred             cCCCcEEEEee----CCeEEEEecccCCCCCeeeeeecCCCC--CceEEEECCCCcEEEE-eecCC--cEEEEECCCCcE
Q 023822          170 DDQGLVFAVAF----GGYIRMFDARKYEKGPFDIFSVGGDIS--DANVVKFSNDGRLMLL-TTMEG--HIHVLDSFRGTL  240 (276)
Q Consensus       170 ~~~~~~l~~~~----d~~i~~~d~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~-~~~dg--~i~i~d~~~~~~  240 (276)
                      +..+.+++.+.    .+.|...++.......... .+..+..  .+..+..  .+.+|+. ...++  .|+++++..+..
T Consensus       285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~-~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~~  361 (414)
T PF02897_consen  285 HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWT-VLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGKE  361 (414)
T ss_dssp             EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEE-EEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred             ccCCEEEEeeCCCCCCcEEEEeccccccccccee-EEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCcE
Confidence            33555555554    3677777877654311111 2223333  3444443  3444444 44444  588999874555


Q ss_pred             EEEeecCCCCCCceEEEEECCCCcEE
Q 023822          241 LSTYNVKPVSRNSTLEASFSPEGMFV  266 (276)
Q Consensus       241 ~~~~~~~~~~~~~v~~~~~s~~g~~l  266 (276)
                      ...+...  ..+.|..+...+++..+
T Consensus       362 ~~~~~~p--~~g~v~~~~~~~~~~~~  385 (414)
T PF02897_consen  362 SREIPLP--EAGSVSGVSGDFDSDEL  385 (414)
T ss_dssp             EEEEESS--SSSEEEEEES-TT-SEE
T ss_pred             EeeecCC--cceEEeccCCCCCCCEE
Confidence            5555432  34556666666666544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.34  E-value=0.00056  Score=54.25  Aligned_cols=223  Identities=11%  Similarity=0.058  Sum_probs=113.1

Q ss_pred             EEcCCCCEEEEeec-C--CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeee
Q 023822           41 DFHKSSSYLVTASD-D--ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF  117 (276)
Q Consensus        41 ~~~~~~~~l~~~~~-d--~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~  117 (276)
                      +|.++|+.|+.++. |  ..+.+.|+++++..+.-.+.........++++.+.++....   ...|+-.|+.+.+....+
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~---~~~l~~vdL~T~e~~~vy  118 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKN---GRSLRRVDLDTLEERVVY  118 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEET---TTEEEEEETTT--EEEEE
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEEC---CCeEEEEECCcCcEEEEE
Confidence            56778987766554 4  46778888888766655543333446777888888876654   678999999998876666


Q ss_pred             cccCcceEEEEec--cCCCEEEEeeC----------------------CCeEEEEeccCceeeeeEee-cCCCeeEecCC
Q 023822          118 KGHHDRVVSLSLC--SSKDCFISGSL----------------------DRTVLLWDQRAEKCQGLLRV-QGRPAAAYDDQ  172 (276)
Q Consensus       118 ~~~~~~i~~~~~~--~~~~~l~~~~~----------------------d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~  172 (276)
                      ......+-...|.  .++..++-.-.                      ...|.--|+.+++....+.. .-...+.++|.
T Consensus       119 ~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~  198 (386)
T PF14583_consen  119 EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPT  198 (386)
T ss_dssp             E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETT
T ss_pred             ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCC
Confidence            6566666555664  34554432211                      23466667777765554432 22457888885


Q ss_pred             C-cEEEEeeC----C-eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEee-----cCCcEEEEECCCCcEE
Q 023822          173 G-LVFAVAFG----G-YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT-----MEGHIHVLDSFRGTLL  241 (276)
Q Consensus       173 ~-~~l~~~~d----~-~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----~dg~i~i~d~~~~~~~  241 (276)
                      . .+++.|-+    . .-++|-++........+... .....+..=-|.|||..|..-+     .+..|.-+|..+++..
T Consensus       199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~-~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~  277 (386)
T PF14583_consen  199 DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR-MEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR  277 (386)
T ss_dssp             EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE
T ss_pred             CCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC-CCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCce
Confidence            5 55565552    2 23667665533322222221 1122344557999998765532     3446778888888765


Q ss_pred             EEeecCCCCCCceEEEEECCCCcEEEEecCC
Q 023822          242 STYNVKPVSRNSTLEASFSPEGMFVISGRVS  272 (276)
Q Consensus       242 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  272 (276)
                      .....     .+...+--++||++++-=+.|
T Consensus       278 ~~~~~-----p~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  278 RLMEM-----PWCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             EEEEE------SEEEEEE-TTSSEEEEEE--
T ss_pred             EEEeC-----CceeeeEEcCCCCEEEecCCC
Confidence            43331     234456678999887664443

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.32  E-value=2.5e-05  Score=67.59  Aligned_cols=133  Identities=11%  Similarity=0.121  Sum_probs=90.3

Q ss_pred             CEEEEe-eCCCeEEEEeccCceeeeeEeecC-CCeeEecCC--------CcEEEEeeCCeEEEEecccCCCCCee-eeee
Q 023822          134 DCFISG-SLDRTVLLWDQRAEKCQGLLRVQG-RPAAAYDDQ--------GLVFAVAFGGYIRMFDARKYEKGPFD-IFSV  202 (276)
Q Consensus       134 ~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~--------~~~l~~~~d~~i~~~d~~~~~~~~~~-~~~~  202 (276)
                      ++|+.- .....|+-.|++.++.+..+..+. ++...+.|+        ...+++-+++.+..||.|-....... ....
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~  573 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ  573 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence            444433 345789999999999999885443 334555553        24566666899999999975421110 0111


Q ss_pred             cCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcE-EEEeecCCCCCCceEEEEECCCCcEEEEecC
Q 023822          203 GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL-LSTYNVKPVSRNSTLEASFSPEGMFVISGRV  271 (276)
Q Consensus       203 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  271 (276)
                      .......+|++-+.+| +||+|+.+|.||+||- .|+. ...+.   +...+|..|..+.||+||++.+.
T Consensus       574 Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp---~lG~pI~~iDvt~DGkwilaTc~  638 (794)
T PF08553_consen  574 YSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALP---GLGDPIIGIDVTADGKWILATCK  638 (794)
T ss_pred             cccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCC---CCCCCeeEEEecCCCcEEEEeec
Confidence            1234567888888887 4999999999999994 4433 22233   67899999999999999876554

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>smart00320 WD40 WD40 repeats

Probab=98.23  E-value=3.8e-06  Score=43.12  Aligned_cols=38  Identities=34%  Similarity=0.639  Sum_probs=33.6

Q ss_pred             ccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEE
Q 023822           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYD   62 (276)
Q Consensus        25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd   62 (276)
                      +....+..|...|.++.|+++++.+++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            34566778999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.22  E-value=0.00041  Score=59.20  Aligned_cols=189  Identities=12%  Similarity=0.012  Sum_probs=104.7

Q ss_pred             eceEEEEEeccCCeEEEecc-----CCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCC---------
Q 023822           77 YGVDLVCFTSHPTTVIYSSK-----NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLD---------  142 (276)
Q Consensus        77 ~~v~~~~~~~~~~~l~~~~~-----~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------  142 (276)
                      ..+...+++|+++.++....     ......|.+++.. +.. ..+.. ......-.|+|+|+.+++....         
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence            35778899999999887762     1113356666642 222 33321 2237788999998877766532         


Q ss_pred             ---CeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEeeCCeEEEEecccCCCCCeee---eeecC-CCCCceEEEEC
Q 023822          143 ---RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDI---FSVGG-DISDANVVKFS  215 (276)
Q Consensus       143 ---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~---~~~~~-~~~~i~~~~~~  215 (276)
                         +.+.+.+++.+.... -....+..+.|+|||..++.-.+++|++--+.........+   ..+.. ....+.++.|.
T Consensus       427 ~~~gql~~~~vd~ge~~~-~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~  505 (591)
T PRK13616        427 PATGQLARTPVDASAVAS-RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWR  505 (591)
T ss_pred             CCCceEEEEeccCchhhh-ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEe
Confidence               233333444433322 11346889999999998888778888884333221111111   11222 22336889999


Q ss_pred             CCCcEEEEeecCCcEEEEECC-CCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCC
Q 023822          216 NDGRLMLLTTMEGHIHVLDSF-RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       216 ~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  273 (276)
                      +++.++ ++..++.-.+|.+. .|.....+.. .....++.+++=+++  .++....+|
T Consensus       506 ~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~-~n~~~~v~~vaa~~~--~iyv~~~~g  560 (591)
T PRK13616        506 TGDSLV-VGRSDPEHPVWYVNLDGSNSDALPS-RNLSAPVVAVAASPS--TVYVTDARA  560 (591)
T ss_pred             cCCEEE-EEecCCCCceEEEecCCccccccCC-CCccCceEEEecCCc--eEEEEcCCc
Confidence            999854 55554444455433 2332222121 013566777777763  344545554

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.20  E-value=2.5e-05  Score=65.07  Aligned_cols=118  Identities=13%  Similarity=0.171  Sum_probs=88.3

Q ss_pred             cCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe--ec-CCCeeEecCCCcEEEEee-CCeEEEEecccCCCC
Q 023822          120 HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR--VQ-GRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKG  195 (276)
Q Consensus       120 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~-~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~  195 (276)
                      +...+.--+++..+++++.|+.-|.+++|+-..++......  .. .+....+++...++|+++ .|.|.++-+......
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence            34455555667788999999999999999977666544432  22 234567788888888888 689999988874443


Q ss_pred             Ceeeeee--cCCCCCceEEEECCCCcEEEEeecCCcEEEEECCC
Q 023822          196 PFDIFSV--GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR  237 (276)
Q Consensus       196 ~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  237 (276)
                      .......  ..|...|++++|++++..+++|...|.|..-.+.+
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            3333322  23578899999999999999999999999988776

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.20  E-value=0.00029  Score=45.28  Aligned_cols=100  Identities=17%  Similarity=0.251  Sum_probs=66.6

Q ss_pred             EEEEEEcC---CC-CEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCc
Q 023822           37 ISSMDFHK---SS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK  112 (276)
Q Consensus        37 v~~~~~~~---~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~  112 (276)
                      |++|++..   +| +.|++|+.|..|++|+-  .+.+.++... ..|..+.-... ..++.+..   +|+|-+|+-.  .
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~---NGTVGvY~~~--~   72 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITET-DKVTSLCSLGG-GRFAYALA---NGTVGVYDRS--Q   72 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecc-cceEEEEEcCC-CEEEEEec---CCEEEEEeCc--c
Confidence            56677654   32 57999999999999984  4566666544 36777776655 56777777   9999999753  3


Q ss_pred             eeeeecccCcceEEEEecc-C--CC-EEEEeeCCCeEE
Q 023822          113 YLRYFKGHHDRVVSLSLCS-S--KD-CFISGSLDRTVL  146 (276)
Q Consensus       113 ~~~~~~~~~~~i~~~~~~~-~--~~-~l~~~~~d~~i~  146 (276)
                      .+...+.. ..+.++++.. +  |. .|++|-.+|.|-
T Consensus        73 RlWRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   73 RLWRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeeeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            34444432 3355555443 3  32 688888888764

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.18  E-value=1.4e-05  Score=65.76  Aligned_cols=90  Identities=13%  Similarity=0.078  Sum_probs=76.1

Q ss_pred             eceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceE-EEEeccCCCEEEEeeCCCeEEEEeccCcee
Q 023822           77 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV-SLSLCSSKDCFISGSLDRTVLLWDQRAEKC  155 (276)
Q Consensus        77 ~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  155 (276)
                      ..+.-+.|+|.-..+|.+..   +|.|.+..++ .+.+.++..|...++ +++|.|||+.|+.|-.||+|++.|..++..
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~---~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~   96 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTE---KGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR   96 (665)
T ss_pred             cceEEEEEcCccchhheecc---CCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence            35788999999999999998   9999999988 677788887777777 999999999999999999999999999887


Q ss_pred             eeeE---eecCCCeeEec
Q 023822          156 QGLL---RVQGRPAAAYD  170 (276)
Q Consensus       156 ~~~~---~~~~~~~~~~~  170 (276)
                      +...   ....+..+.|+
T Consensus        97 l~~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   97 LVSFLFSVETDISKGIWD  114 (665)
T ss_pred             eeccccccccchheeecc
Confidence            7663   34445566665

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.18  E-value=0.0012  Score=49.00  Aligned_cols=103  Identities=10%  Similarity=0.001  Sum_probs=72.4

Q ss_pred             CCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceE
Q 023822           46 SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV  125 (276)
Q Consensus        46 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~  125 (276)
                      |++++.|+..|.+++.+.++|.....+.....--......+++..+..++.   |+..+..|..+...+...+...+...
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgsh---d~~~yalD~~~~~cVykskcgG~~f~  139 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSH---DGNFYALDPKTYGCVYKSKCGGGTFV  139 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecC---CCcEEEecccccceEEecccCCceec
Confidence            567889999999999999999877766544322223345568889999988   99999999999988888775555555


Q ss_pred             EEEeccCCCEEEEeeCCCeEEEEecc
Q 023822          126 SLSLCSSKDCFISGSLDRTVLLWDQR  151 (276)
Q Consensus       126 ~~~~~~~~~~l~~~~~d~~i~iwd~~  151 (276)
                      +-+..|-...|..+...|.+.--..+
T Consensus       140 sP~i~~g~~sly~a~t~G~vlavt~~  165 (354)
T KOG4649|consen  140 SPVIAPGDGSLYAAITAGAVLAVTKN  165 (354)
T ss_pred             cceecCCCceEEEEeccceEEEEccC
Confidence            55666633344445555655444433

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.14  E-value=0.0022  Score=50.94  Aligned_cols=180  Identities=19%  Similarity=0.173  Sum_probs=99.7

Q ss_pred             CCEEEEeec----------CCeEEEEEccCC----eeeeee--eeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEcc
Q 023822           46 SSYLVTASD----------DESIRLYDVTAA----TCLKTI--NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH  109 (276)
Q Consensus        46 ~~~l~~~~~----------d~~i~iwd~~~~----~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~  109 (276)
                      ..+|+.|..          .|.|.++++...    ..+..+  ...+++|.+++-.  +.+++++.    ++.|.+|++.
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~~----g~~l~v~~l~  115 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGRLVVAV----GNKLYVYDLD  115 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTEEEEEE----TTEEEEEEEE
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCEEEEee----cCEEEEEEcc
Confidence            467777653          288999999884    222222  2335678887776  44566665    7899999998


Q ss_pred             CCc-eeeeec-ccCcceEEEEeccCCCEEEEeeCCCeEEEEeccC-ceeeeeE-e---ecCCCeeEecCCCcEEEEee-C
Q 023822          110 DNK-YLRYFK-GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA-EKCQGLL-R---VQGRPAAAYDDQGLVFAVAF-G  181 (276)
Q Consensus       110 ~~~-~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~-~---~~~~~~~~~~~~~~~l~~~~-d  181 (276)
                      ..+ ....-. .....+.++..  .+++++.|+....+.++..+. ......+ .   ...+.++.+-+++..++++. +
T Consensus       116 ~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~  193 (321)
T PF03178_consen  116 NSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKD  193 (321)
T ss_dssp             TTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETT
T ss_pred             CcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCC
Confidence            887 333221 12234555554  466899999888888875554 2223333 2   12234566654444555555 8


Q ss_pred             CeEEEEecccCC-----CC-CeeeeeecCCCCCceEE---EECC--CC------cEEEEeecCCcEEEE
Q 023822          182 GYIRMFDARKYE-----KG-PFDIFSVGGDISDANVV---KFSN--DG------RLMLLTTMEGHIHVL  233 (276)
Q Consensus       182 ~~i~~~d~~~~~-----~~-~~~~~~~~~~~~~i~~~---~~~~--~~------~~l~~~~~dg~i~i~  233 (276)
                      |.+.++......     .. .+...........|+++   .+.|  .+      ..++.++.+|.|...
T Consensus       194 gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  194 GNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             SEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             CeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            999999876321     11 12222222233456666   4455  22      247778888888743

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=1.5e-05  Score=65.46  Aligned_cols=94  Identities=14%  Similarity=0.146  Sum_probs=78.6

Q ss_pred             CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceE-EEEEeccCCeEEEeccCCCCCceEEEEccCCc
Q 023822           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVD-LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK  112 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~  112 (276)
                      ...|.-+.|+|.-.++|++..+|.+.+..+. .+.+.++..+...++ +++|.|||+.+++|-.   ||+|++.|++++.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~k---dG~I~L~Dve~~~   95 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFK---DGTIRLHDVEKGG   95 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEec---CCeEEEEEccCCC
Confidence            4568889999999999999999999999887 777888886766777 9999999999999999   9999999999987


Q ss_pred             eeeee-cccCcceEEEEecc
Q 023822          113 YLRYF-KGHHDRVVSLSLCS  131 (276)
Q Consensus       113 ~~~~~-~~~~~~i~~~~~~~  131 (276)
                      .+... ......|.++-|.+
T Consensus        96 ~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   96 RLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             ceeccccccccchheeeccc
Confidence            76652 22455677777763

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.12  E-value=0.0019  Score=54.47  Aligned_cols=192  Identities=19%  Similarity=0.228  Sum_probs=112.8

Q ss_pred             CCEEEEeecCCeEEEEEccCCeeeeeeeeeee------ceE--EEEEeccCCeEEEeccCCCCCceEEEEccCCceeeee
Q 023822           46 SSYLVTASDDESIRLYDVTAATCLKTINSKKY------GVD--LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF  117 (276)
Q Consensus        46 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~------~v~--~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~  117 (276)
                      +..++.++.++.+.-.|..+|+.+-.+.....      .+.  .+... ++..++.++.   ++.|.-+|.++++.+..+
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~---~g~v~AlD~~TG~~~W~~  136 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTF---DGRLVALDAETGKQVWKF  136 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecC---CCeEEEEECCCCCEeeee
Confidence            45677777889999999999987766643321      000  11111 2256777776   999999999999998876


Q ss_pred             cccCcc-----e-EEEEeccCCCEEEEee---------CCCeEEEEeccCceeeeeEeecCC------------------
Q 023822          118 KGHHDR-----V-VSLSLCSSKDCFISGS---------LDRTVLLWDQRAEKCQGLLRVQGR------------------  164 (276)
Q Consensus       118 ~~~~~~-----i-~~~~~~~~~~~l~~~~---------~d~~i~iwd~~~~~~~~~~~~~~~------------------  164 (276)
                      ......     + ....+.  +..++.++         .++.+..+|..+++.+-.+.....                  
T Consensus       137 ~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~  214 (488)
T cd00216         137 GNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPG  214 (488)
T ss_pred             cCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCC
Confidence            543221     1 111221  24455553         367899999998887665532110                  


Q ss_pred             -----CeeEecCCC-cEEEEeeCC------------------eEEEEecccCCCCCeeeeeecCCCC----CceEEEEC-
Q 023822          165 -----PAAAYDDQG-LVFAVAFGG------------------YIRMFDARKYEKGPFDIFSVGGDIS----DANVVKFS-  215 (276)
Q Consensus       165 -----~~~~~~~~~-~~l~~~~d~------------------~i~~~d~~~~~~~~~~~~~~~~~~~----~i~~~~~~-  215 (276)
                           ...++++.+ .+++...++                  .+.-+|.++++..-.  +....+..    ......+. 
T Consensus       215 g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~--~~~~~~~~~~~~~~s~p~~~~  292 (488)
T cd00216         215 GGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWF--YQTTPHDLWDYDGPNQPSLAD  292 (488)
T ss_pred             CCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEE--eeCCCCCCcccccCCCCeEEe
Confidence                 123444444 444444344                  688889888775211  11111110    00001111 


Q ss_pred             ---CCCc---EEEEeecCCcEEEEECCCCcEEEEee
Q 023822          216 ---NDGR---LMLLTTMEGHIHVLDSFRGTLLSTYN  245 (276)
Q Consensus       216 ---~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~  245 (276)
                         -+|.   .++.++.+|.+...|..+|+.+-...
T Consensus       293 ~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~  328 (488)
T cd00216         293 IKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARP  328 (488)
T ss_pred             ccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence               1332   67888899999999999999887654

The alignment model contains an 8-bladed beta-propeller.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.09  E-value=6.3e-07  Score=73.42  Aligned_cols=159  Identities=19%  Similarity=0.271  Sum_probs=104.5

Q ss_pred             eeeccCCCcEEEEEEcC-CCCEEEEee----cCCeEEEEEccCC--ee--eeeeee-eeeceEEEEEeccCCeEEEeccC
Q 023822           28 MSFRDYNGRISSMDFHK-SSSYLVTAS----DDESIRLYDVTAA--TC--LKTINS-KKYGVDLVCFTSHPTTVIYSSKN   97 (276)
Q Consensus        28 ~~~~~h~~~v~~~~~~~-~~~~l~~~~----~d~~i~iwd~~~~--~~--~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~   97 (276)
                      ....+|..+.++++|++ |.+.||.|-    .|..+.|||+.++  .+  ...+.. ......+++|..+.+.+++|.. 
T Consensus        96 E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~-  174 (783)
T KOG1008|consen   96 EVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMT-  174 (783)
T ss_pred             eecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccc-
Confidence            34557788999999998 667777763    3567999999876  21  112222 2334568888888888888887 


Q ss_pred             CCCCceEEEEccCCceeeeecccCcceEEEEecc-CCCEEEEeeCCCeEEEEe-ccCce-eeeeE-ee-----cCCCeeE
Q 023822           98 GWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWD-QRAEK-CQGLL-RV-----QGRPAAA  168 (276)
Q Consensus        98 ~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd-~~~~~-~~~~~-~~-----~~~~~~~  168 (276)
                        ...+.++|++...... ..-.+..+..+...| .++++++-. ||.|.+|| .++-+ +...+ +.     .....++
T Consensus       175 --sr~~~ifdlRqs~~~~-~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~a  250 (783)
T KOG1008|consen  175 --SRSVHIFDLRQSLDSV-SSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALA  250 (783)
T ss_pred             --cchhhhhhhhhhhhhh-hhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEE
Confidence              8899999987432111 111234566677888 677777665 99999999 33322 22222 11     2255789


Q ss_pred             ecCCC--cEEEEee-CCeEEEEeccc
Q 023822          169 YDDQG--LVFAVAF-GGYIRMFDARK  191 (276)
Q Consensus       169 ~~~~~--~~l~~~~-d~~i~~~d~~~  191 (276)
                      |+|..  .+.+... .++|++||++.
T Consensus       251 ycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  251 YCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             eccCCcchhhhhccCcceEEEecccc
Confidence            98854  4444444 59999999875

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.09  E-value=0.0019  Score=53.02  Aligned_cols=163  Identities=17%  Similarity=0.112  Sum_probs=82.4

Q ss_pred             ceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE----eecCCCee-----EecCC
Q 023822          102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL----RVQGRPAA-----AYDDQ  172 (276)
Q Consensus       102 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~-----~~~~~  172 (276)
                      .|.+|+.. |+.+..+.-..+.|.++.|..+. .|+....||.+++||+.... ...+    ....+...     .+...
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~  138 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKN  138 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCC
Confidence            48888754 44555543333889999998765 45666789999999987444 1111    12222211     22334


Q ss_pred             CcEEEEeeCCeEEEEecccCCCCCeeeeeecC-----CCC-CceE-EEECCCCcEEEEeecCCcEEEEECCCCcEEEEee
Q 023822          173 GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGG-----DIS-DANV-VKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  245 (276)
Q Consensus       173 ~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~-----~~~-~i~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  245 (276)
                      |..+ ...++.+.+..--..............     +.. .... ..++.+....+....++.+.+.+-...+.   + 
T Consensus       139 Givv-Lt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i-  213 (410)
T PF04841_consen  139 GIVV-LTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I-  213 (410)
T ss_pred             CEEE-ECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c-
Confidence            5333 333444444322111100000001000     000 0000 22333444444444445555444222211   1 


Q ss_pred             cCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          246 VKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       246 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                         ...+++..++.||+|++||.-..+|.+
T Consensus       214 ---~~~~~i~~iavSpng~~iAl~t~~g~l  240 (410)
T PF04841_consen  214 ---DSDGPIIKIAVSPNGKFIALFTDSGNL  240 (410)
T ss_pred             ---cCCCCeEEEEECCCCCEEEEEECCCCE
Confidence               134689999999999999988888763

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.08  E-value=0.00066  Score=55.03  Aligned_cols=200  Identities=10%  Similarity=0.152  Sum_probs=103.8

Q ss_pred             hccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeee--e------eeeceEEEEEec-----cC
Q 023822           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN--S------KKYGVDLVCFTS-----HP   88 (276)
Q Consensus        22 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~------~~~~v~~~~~~~-----~~   88 (276)
                      +.+.+...++...++|++++.|. =-++|.|.++|.+.|.|++....+..-.  .      ....++++.|.-     |+
T Consensus        74 ~gf~P~~l~~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~  152 (395)
T PF08596_consen   74 EGFLPLTLLDAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG  152 (395)
T ss_dssp             EEEEEEEEE---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred             cccCchhheeccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence            45677777777899999999984 4599999999999999998777665522  1      233577787762     22


Q ss_pred             ---CeEEEeccCCCCCceEEEEccC---Ccee----eeecccCcceEEEE-eccC-----------------C---CEEE
Q 023822           89 ---TTVIYSSKNGWDESLRLLSLHD---NKYL----RYFKGHHDRVVSLS-LCSS-----------------K---DCFI  137 (276)
Q Consensus        89 ---~~l~~~~~~~~d~~i~~~d~~~---~~~~----~~~~~~~~~i~~~~-~~~~-----------------~---~~l~  137 (276)
                         -.+++|..   .|.+.+|.+.-   +...    .....+.++|..+. ++.+                 +   +-++
T Consensus       153 ySSi~L~vGTn---~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~v  229 (395)
T PF08596_consen  153 YSSICLLVGTN---SGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYV  229 (395)
T ss_dssp             SEEEEEEEEET---TSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEE
T ss_pred             ccceEEEEEeC---CCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEE
Confidence               35677776   89999998741   2111    11223555555554 3211                 1   2234


Q ss_pred             EeeCCCeEEEEeccCceeeeeEeecCCC--eeEec-----CCCcEEEEee-CCeEEEEecccCCCCCeeeeeec--CCCC
Q 023822          138 SGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYD-----DQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVG--GDIS  207 (276)
Q Consensus       138 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~-----~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~--~~~~  207 (276)
                      ....+..++++...+.+..+........  .+.+-     ..+..|++-. +|.|++|.+-..+.  +....+.  ....
T Consensus       230 VvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke--i~~~~l~~~~d~~  307 (395)
T PF08596_consen  230 VVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE--IKSVSLPPPLDSR  307 (395)
T ss_dssp             EEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E--EEEEE-SS---HH
T ss_pred             EEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchH--hhcccCCCccccc
Confidence            4444678999998877766554322111  22231     2344444444 89999999987543  2122221  1112


Q ss_pred             CceEEEECCCCcEEEEeecC
Q 023822          208 DANVVKFSNDGRLMLLTTME  227 (276)
Q Consensus       208 ~i~~~~~~~~~~~l~~~~~d  227 (276)
                      .+....++++|..++-.+..
T Consensus       308 ~~~~ssis~~Gdi~~~~gps  327 (395)
T PF08596_consen  308 RLSSSSISRNGDIFYWTGPS  327 (395)
T ss_dssp             HHTT-EE-TTS-EEEE-SSS
T ss_pred             cccccEECCCCCEEEEeCcc
Confidence            34567789999877666543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.08  E-value=0.0029  Score=49.46  Aligned_cols=196  Identities=15%  Similarity=0.187  Sum_probs=115.4

Q ss_pred             EEEEcCCCCEEEEee--cCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEcc-CCceee
Q 023822           39 SMDFHKSSSYLVTAS--DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH-DNKYLR  115 (276)
Q Consensus        39 ~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~-~~~~~~  115 (276)
                      .++++.|+++++...  --..|.|-|+...+.+.++....  +..+--.+ ++.+.+.+.   ||.+.-..+. .|+...
T Consensus        99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~iyP~~-~~~F~~lC~---DGsl~~v~Ld~~Gk~~~  172 (342)
T PF06433_consen   99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLIYPSG-NRGFSMLCG---DGSLLTVTLDADGKEAQ  172 (342)
T ss_dssp             GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEEEEEE-TTEEEEEET---TSCEEEEEETSTSSEEE
T ss_pred             ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEEEecC-CCceEEEec---CCceEEEEECCCCCEeE
Confidence            467888888877654  33468889998888887775432  22222222 244556665   9999999887 455432


Q ss_pred             ee----cccCcce-EEEEeccCCCEEEEeeCCCeEEEEeccCceeeee--E------------eecCCCeeEecCCC-cE
Q 023822          116 YF----KGHHDRV-VSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL--L------------RVQGRPAAAYDDQG-LV  175 (276)
Q Consensus       116 ~~----~~~~~~i-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--~------------~~~~~~~~~~~~~~-~~  175 (276)
                      ..    ..-..++ ..-++...+..++--+.+|.|+--|+........  +            ...+-..+++++.. ++
T Consensus       173 ~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rl  252 (342)
T PF06433_consen  173 KSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRL  252 (342)
T ss_dssp             EEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEE
T ss_pred             eeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeE
Confidence            21    1111222 2333444555666678899999888876542211  1            23344468888655 44


Q ss_pred             EEEee--------C--CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCc-EEEEe-ecCCcEEEEECCCCcEEEE
Q 023822          176 FAVAF--------G--GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR-LMLLT-TMEGHIHVLDSFRGTLLST  243 (276)
Q Consensus       176 l~~~~--------d--~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~~dg~i~i~d~~~~~~~~~  243 (276)
                      ++.-.        |  ..|-+||+.+.+.    +..+.. ..++.+|+.+.+.+ +|++. ..++.+.+||..+|+.+.+
T Consensus       253 yvLMh~g~~gsHKdpgteVWv~D~~t~kr----v~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~  327 (342)
T PF06433_consen  253 YVLMHQGGEGSHKDPGTEVWVYDLKTHKR----VARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRS  327 (342)
T ss_dssp             EEEEEE--TT-TTS-EEEEEEEETTTTEE----EEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEE
T ss_pred             EEEecCCCCCCccCCceEEEEEECCCCeE----EEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEee
Confidence            44322        1  2577778777553    333321 23678999998765 56554 4578999999999999999


Q ss_pred             ee
Q 023822          244 YN  245 (276)
Q Consensus       244 ~~  245 (276)
                      +.
T Consensus       328 ~~  329 (342)
T PF06433_consen  328 IE  329 (342)
T ss_dssp             E-
T ss_pred             hh
Confidence            87

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>smart00320 WD40 WD40 repeats

Probab=98.07  E-value=1.5e-05  Score=40.66  Aligned_cols=38  Identities=34%  Similarity=0.573  Sum_probs=33.3

Q ss_pred             ceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEe
Q 023822          112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD  149 (276)
Q Consensus       112 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd  149 (276)
                      ++...+..|...|.++.|+++++.+++++.|+.+++||
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            44566677889999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.05  E-value=0.00087  Score=43.13  Aligned_cols=100  Identities=13%  Similarity=0.218  Sum_probs=65.3

Q ss_pred             eEEEEecc---CC-CEEEEeeCCCeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEeeCCeEEEEecccCCCCCee
Q 023822          124 VVSLSLCS---SK-DCFISGSLDRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFD  198 (276)
Q Consensus       124 i~~~~~~~---~~-~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~  198 (276)
                      |++|++..   +| +.|++|+.|..|++|+-.  +.+..+ ....+..+.-...+++.++-.+|+|-+|+-..      .
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~------R   73 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRSQ------R   73 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCcc------e
Confidence            55666554   33 489999999999999744  455555 44556677777777777777799999998643      1


Q ss_pred             eeeecCCCCCceEEEEC-CCC---cEEEEeecCCcEEE
Q 023822          199 IFSVGGDISDANVVKFS-NDG---RLMLLTTMEGHIHV  232 (276)
Q Consensus       199 ~~~~~~~~~~i~~~~~~-~~~---~~l~~~~~dg~i~i  232 (276)
                      ....+... .+.++++. .++   +.|++|-.+|.|-+
T Consensus        74 lWRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   74 LWRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             eeeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            33333333 35555443 332   46888888887643

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.04  E-value=0.0013  Score=56.24  Aligned_cols=188  Identities=8%  Similarity=-0.008  Sum_probs=105.3

Q ss_pred             CcEEEEEEcCCCCEEEEee------cCC--eEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccC---------
Q 023822           35 GRISSMDFHKSSSYLVTAS------DDE--SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN---------   97 (276)
Q Consensus        35 ~~v~~~~~~~~~~~l~~~~------~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~---------   97 (276)
                      ..+...+++|+|+.+|...      .|+  .|.+++. .+.. ..+.... ....-.|+|+++.+.+....         
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~g~-~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLEGH-SLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeecCC-CCCCceECCCCCceEEEecCcceEEEecc
Confidence            4577889999999887655      243  4555554 2222 3332222 37888999998877776531         


Q ss_pred             CCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEE---EeccCcee-e---eeE--eecC-CCee
Q 023822           98 GWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLL---WDQRAEKC-Q---GLL--RVQG-RPAA  167 (276)
Q Consensus        98 ~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i---wd~~~~~~-~---~~~--~~~~-~~~~  167 (276)
                      ...+.+.+.++..++...   .....|..+.|+|||..++... ++.|.+   -....+.. +   ..+  .... ...+
T Consensus       427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l  502 (591)
T PRK13616        427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL  502 (591)
T ss_pred             CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence            012344444555444332   3356799999999999887765 577776   33333431 1   011  1222 4678


Q ss_pred             EecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEE
Q 023822          168 AYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHV  232 (276)
Q Consensus       168 ~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  232 (276)
                      .|.+++.+++...++.-.+|.+.-...... .........++..++-+++  .++....+|.+.+
T Consensus       503 ~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~-~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~l  564 (591)
T PRK13616        503 DWRTGDSLVVGRSDPEHPVWYVNLDGSNSD-ALPSRNLSAPVVAVAASPS--TVYVTDARAVLQL  564 (591)
T ss_pred             eEecCCEEEEEecCCCCceEEEecCCcccc-ccCCCCccCceEEEecCCc--eEEEEcCCceEEe
Confidence            999999987665544334444332211110 1111112456667776663  3555666664443

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.00  E-value=0.0002  Score=58.09  Aligned_cols=135  Identities=9%  Similarity=0.125  Sum_probs=92.2

Q ss_pred             CCC-EEEEeeCCCeEEEEeccCceeeeeEeec-CCCeeEecCCC--------cEEEEeeCCeEEEEecccCCCCCeeeee
Q 023822          132 SKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQ-GRPAAAYDDQG--------LVFAVAFGGYIRMFDARKYEKGPFDIFS  201 (276)
Q Consensus       132 ~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~--------~~l~~~~d~~i~~~d~~~~~~~~~~~~~  201 (276)
                      +.+ +|.++.....++-.|++.++.+.....+ .++.+.+.|+.        .-|++-++..|.-||+|-.....+....
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q  423 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ  423 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence            444 3445555677999999999999888433 36777777764        3455666899999999864432221111


Q ss_pred             e--cCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcE-EEEeecCCCCCCceEEEEECCCCcEEEEecC
Q 023822          202 V--GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL-LSTYNVKPVSRNSTLEASFSPEGMFVISGRV  271 (276)
Q Consensus       202 ~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  271 (276)
                      .  ........|.+-..+| ++++||.+|.||+||- .+.. ...+.   +...+|..+..+.||++++..+.
T Consensus       424 ~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlP---gLG~~I~hVdvtadGKwil~Tc~  491 (644)
T KOG2395|consen  424 SKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALP---GLGDAIKHVDVTADGKWILATCK  491 (644)
T ss_pred             ccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhccc---ccCCceeeEEeeccCcEEEEecc
Confidence            1  1122356666666666 6999999999999996 4433 33344   78899999999999999876554

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.93  E-value=0.0043  Score=47.40  Aligned_cols=148  Identities=17%  Similarity=0.206  Sum_probs=89.0

Q ss_pred             ceEEEEeccCCCEEEEee---CCCeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee-CCeEEEEe-cccCCCCC
Q 023822          123 RVVSLSLCSSKDCFISGS---LDRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF-GGYIRMFD-ARKYEKGP  196 (276)
Q Consensus       123 ~i~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d-~~~~~~~~  196 (276)
                      .+.+.+++++++.++...   ....++++...  ...... .......-.|++++.+.+... +...+++. ...+...+
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~  102 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP  102 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence            678899999999777655   23345555433  322222 444666788999998887776 45555553 33333222


Q ss_pred             eeeeeecCCCCCceEEEECCCCcEEEEee---cCCcEEEEECC---CC---cEEEEeecCCCCCCceEEEEECCCCcEEE
Q 023822          197 FDIFSVGGDISDANVVKFSNDGRLMLLTT---MEGHIHVLDSF---RG---TLLSTYNVKPVSRNSTLEASFSPEGMFVI  267 (276)
Q Consensus       197 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~---~~---~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  267 (276)
                      ... ........|..+.+||||..++...   .++.|.+--+.   .+   ...............+.+++|.+++.+++
T Consensus       103 ~~v-~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V  181 (253)
T PF10647_consen  103 VEV-DWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV  181 (253)
T ss_pred             EEe-cccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence            211 1111112899999999998877765   34667766432   33   11111121112356889999999999887


Q ss_pred             EecCCC
Q 023822          268 SGRVSP  273 (276)
Q Consensus       268 ~~~~dg  273 (276)
                      .+...+
T Consensus       182 ~~~~~~  187 (253)
T PF10647_consen  182 LGRSAG  187 (253)
T ss_pred             EeCCCC
Confidence            766554

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.89  E-value=0.0066  Score=47.08  Aligned_cols=149  Identities=14%  Similarity=0.121  Sum_probs=93.3

Q ss_pred             ccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeee-------
Q 023822           86 SHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL-------  158 (276)
Q Consensus        86 ~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-------  158 (276)
                      ..++.++.|+.   +| +.++++........+. +...|..+...|+-+.+++-+ |+.++++++..-.....       
T Consensus         5 ~~~~~L~vGt~---~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~   78 (275)
T PF00780_consen    5 SWGDRLLVGTE---DG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP   78 (275)
T ss_pred             cCCCEEEEEEC---CC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence            35788899976   66 9999983332222222 233499999999888776665 59999999886544331       


Q ss_pred             --------E-eecCCCeeE---ecCCCcEEEEeeCCeEEEEecccCCCCC-eeeeeecCCCCCceEEEECCCCcEEEEee
Q 023822          159 --------L-RVQGRPAAA---YDDQGLVFAVAFGGYIRMFDARKYEKGP-FDIFSVGGDISDANVVKFSNDGRLMLLTT  225 (276)
Q Consensus       159 --------~-~~~~~~~~~---~~~~~~~l~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  225 (276)
                              + ...++...+   -......++++....|.+|......... .....+ .-...+..++|.  ++.++.|.
T Consensus        79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~-~lp~~~~~i~~~--~~~i~v~~  155 (275)
T PF00780_consen   79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI-SLPDPPSSIAFL--GNKICVGT  155 (275)
T ss_pred             ccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE-EcCCCcEEEEEe--CCEEEEEe
Confidence                    1 111222223   2234467777778899999988743211 112222 233678889998  45677776


Q ss_pred             cCCcEEEEECCCCcEEEEe
Q 023822          226 MEGHIHVLDSFRGTLLSTY  244 (276)
Q Consensus       226 ~dg~i~i~d~~~~~~~~~~  244 (276)
                      .+ ...+.|+.++.....+
T Consensus       156 ~~-~f~~idl~~~~~~~l~  173 (275)
T PF00780_consen  156 SK-GFYLIDLNTGSPSELL  173 (275)
T ss_pred             CC-ceEEEecCCCCceEEe
Confidence            55 4788998877665444

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.87  E-value=0.013  Score=49.91  Aligned_cols=102  Identities=8%  Similarity=0.072  Sum_probs=65.8

Q ss_pred             CCeEEEEEccCCeeeeeeeeeee-------------------------------ce-EEEEEeccCCeEEEeccC-----
Q 023822           55 DESIRLYDVTAATCLKTINSKKY-------------------------------GV-DLVCFTSHPTTVIYSSKN-----   97 (276)
Q Consensus        55 d~~i~iwd~~~~~~~~~~~~~~~-------------------------------~v-~~~~~~~~~~~l~~~~~~-----   97 (276)
                      +|.|.-+|.++|+.+-.+..-..                               .+ ..+++.+....++.+..+     
T Consensus       180 ~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~  259 (527)
T TIGR03075       180 RGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWN  259 (527)
T ss_pred             CcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCC
Confidence            68899999999987765432110                               01 133555666666666532     


Q ss_pred             C--------CCCceEEEEccCCceeeeecccCcceEE---------EEeccCCC---EEEEeeCCCeEEEEeccCceee
Q 023822           98 G--------WDESLRLLSLHDNKYLRYFKGHHDRVVS---------LSLCSSKD---CFISGSLDRTVLLWDQRAEKCQ  156 (276)
Q Consensus        98 ~--------~d~~i~~~d~~~~~~~~~~~~~~~~i~~---------~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~  156 (276)
                      +        +...|.-.|+++++....++.....+..         +.+..+|+   .++.+..+|.+++.|.++++.+
T Consensus       260 ~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       260 SHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             CCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            0        1226888899999988877643322222         22223665   7789999999999999998875

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.86  E-value=0.0016  Score=53.07  Aligned_cols=141  Identities=16%  Similarity=0.242  Sum_probs=97.8

Q ss_pred             cCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCC-------EEEEeeCCCeEEEEeccCcee-eee
Q 023822           87 HPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-------CFISGSLDRTVLLWDQRAEKC-QGL  158 (276)
Q Consensus        87 ~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~d~~i~iwd~~~~~~-~~~  158 (276)
                      +.+.++.....  ...++-.|++.|+.+..++-+.. |.-+.+.|+.+       .-+.|-.|..|.-||.|-... ...
T Consensus       344 dsnlil~~~~~--~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~  420 (644)
T KOG2395|consen  344 DSNLILMDGGE--QDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA  420 (644)
T ss_pred             ccceEeeCCCC--cCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceee
Confidence            34444443322  67789999999999999987766 77777887643       234566688999999984332 111


Q ss_pred             E-------eecCCCeeEecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEE
Q 023822          159 L-------RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIH  231 (276)
Q Consensus       159 ~-------~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  231 (276)
                      .       ......|.+-..+|.+++++.+|.|++||--. ...   ...+++...+|..+..+.+|++++..+ +..+.
T Consensus       421 ~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~-~~A---KTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLl  495 (644)
T KOG2395|consen  421 VVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIG-RRA---KTALPGLGDAIKHVDVTADGKWILATC-KTYLL  495 (644)
T ss_pred             eeeccccccccccceeeecCCceEEEeecCCcEEeehhhh-hhh---hhcccccCCceeeEEeeccCcEEEEec-ccEEE
Confidence            1       22234577777888888888899999999732 221   334567778999999999999887654 55677


Q ss_pred             EEEC
Q 023822          232 VLDS  235 (276)
Q Consensus       232 i~d~  235 (276)
                      +.++
T Consensus       496 Li~t  499 (644)
T KOG2395|consen  496 LIDT  499 (644)
T ss_pred             EEEE
Confidence            7664

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.85  E-value=0.0046  Score=46.71  Aligned_cols=186  Identities=15%  Similarity=0.157  Sum_probs=112.2

Q ss_pred             EEcCCCCEEEEeecC-----CeEEEEEccCC-eeeeeeeeeeeceEEEEEeccCCeEEEeccC---------------CC
Q 023822           41 DFHKSSSYLVTASDD-----ESIRLYDVTAA-TCLKTINSKKYGVDLVCFTSHPTTVIYSSKN---------------GW   99 (276)
Q Consensus        41 ~~~~~~~~l~~~~~d-----~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~---------------~~   99 (276)
                      .|||||.+|...-.|     |.|-|||...+ +.+.++..|.-....+.|.+|++.++.+..+               ..
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsM  199 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSM  199 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhc
Confidence            589999998865433     68899998743 5567778888788899999999999987531               01


Q ss_pred             CCceEEEEccCCceeee--ec--ccCcceEEEEeccCCCEEEEeeCCCe-----EEEEeccCceeeeeEe---------e
Q 023822          100 DESLRLLSLHDNKYLRY--FK--GHHDRVVSLSLCSSKDCFISGSLDRT-----VLLWDQRAEKCQGLLR---------V  161 (276)
Q Consensus       100 d~~i~~~d~~~~~~~~~--~~--~~~~~i~~~~~~~~~~~l~~~~~d~~-----i~iwd~~~~~~~~~~~---------~  161 (276)
                      .-.+.+.|..+++.+.+  +.  .+...|..++..+||..++-+-..|.     -.+=-.+.++....+.         .
T Consensus       200 ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~a  279 (366)
T COG3490         200 EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFA  279 (366)
T ss_pred             CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHH
Confidence            23344555445544332  22  24456788888888876665544331     1111112233333331         1


Q ss_pred             cCCCeeEecCCCcEEEEee--CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEE
Q 023822          162 QGRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD  234 (276)
Q Consensus       162 ~~~~~~~~~~~~~~l~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  234 (276)
                      +.+-+++.+.+..+++..+  .+...+||..++..     .... .-.....++-.  ..-+++.+.+|.+.++.
T Consensus       280 nYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~v-----v~~a-~l~daaGva~~--~~gf~vssg~G~~~~~s  346 (366)
T COG3490         280 NYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAV-----VSEA-ALPDAAGVAAA--KGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             hhhhheeecccCCeEEEecCCCCeEEEEEcCCCcE-----Eecc-cccccccceec--cCceEEecCCceEEecc
Confidence            2244778887777777666  67889999998763     1111 11122333333  33366777888888874

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.79  E-value=6.7e-05  Score=64.13  Aligned_cols=107  Identities=15%  Similarity=0.157  Sum_probs=83.8

Q ss_pred             EEEEeccCCCEEEEeeC----CCeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCee
Q 023822          125 VSLSLCSSKDCFISGSL----DRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFD  198 (276)
Q Consensus       125 ~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~  198 (276)
                      +-..|+|...+|++++-    .|+|.||- +++++.... ..-.+.+++|+|...+|+.+. -|.+.+|.....+.    
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~----   93 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET----   93 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCcee----
Confidence            44579999998887764    57888884 555554443 333456799999999999998 59999999876443    


Q ss_pred             eeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECC
Q 023822          199 IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF  236 (276)
Q Consensus       199 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  236 (276)
                      -.....|+.+|..+.|||+|..|+++..-|.|.+|...
T Consensus        94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            23345688999999999999999999999999999865

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.75  E-value=0.0081  Score=44.08  Aligned_cols=208  Identities=12%  Similarity=0.117  Sum_probs=112.9

Q ss_pred             CEEEEeecCCeEEEEEccCCeeee-eeeeeeeceEEEEEeccC--CeEEEeccCCCCCceEEEEcc--CCceeeeecc--
Q 023822           47 SYLVTASDDESIRLYDVTAATCLK-TINSKKYGVDLVCFTSHP--TTVIYSSKNGWDESLRLLSLH--DNKYLRYFKG--  119 (276)
Q Consensus        47 ~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~--~~l~~~~~~~~d~~i~~~d~~--~~~~~~~~~~--  119 (276)
                      .++.+-=..+.|.-||.+..+..+ .+...  +...+.+--.+  +.++++..  ..-.|.-||..  .....+++..  
T Consensus        28 sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G--~kf~i~nwd~~~~~a~v~~t~~ev~  103 (310)
T KOG4499|consen   28 SLLYVDIEAGEVHRYDIEQNKVYRAKIEGP--PSAGFILPVEGGPQEFAVGCG--SKFVIVNWDGVSESAKVYRTLFEVQ  103 (310)
T ss_pred             eEEEEEeccCceehhhhhhhheEEEEEecC--cceeEEEEecCCCceEEEeec--ceEEEEEcccccceeeeeeeccccC
Confidence            445554456677778887654332 22222  23333332222  23333321  03345556632  2222333211  


Q ss_pred             ---cCcceEEEEeccCCCEEEEeeCC---------CeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee--CCeE
Q 023822          120 ---HHDRVVSLSLCSSKDCFISGSLD---------RTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF--GGYI  184 (276)
Q Consensus       120 ---~~~~i~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~--d~~i  184 (276)
                         .....+.-..+|+|++++-.-.|         |.++.|-... +..... ...-.+.++|+.+.+.+..-.  +-.|
T Consensus       104 ~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h-~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V  182 (310)
T KOG4499|consen  104 PDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH-QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEV  182 (310)
T ss_pred             chHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCC-CceeeehhccCCccccccccCcEEEEEccCceEE
Confidence               13455667788999985432222         3344443221 111122 222234788888776665554  6777


Q ss_pred             EEEe--cccCCCC-CeeeeeecC----CCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEE
Q 023822          185 RMFD--ARKYEKG-PFDIFSVGG----DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA  257 (276)
Q Consensus       185 ~~~d--~~~~~~~-~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~  257 (276)
                      .-||  ..++... +..++.+..    .....-.+++..+|++.++.-..++|...|..+|+.+.++.   -....|+++
T Consensus       183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eik---lPt~qitsc  259 (310)
T KOG4499|consen  183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIK---LPTPQITSC  259 (310)
T ss_pred             eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEE---cCCCceEEE
Confidence            6677  4444321 112333222    11233456677788888888888999999999999999999   467889999


Q ss_pred             EECCC
Q 023822          258 SFSPE  262 (276)
Q Consensus       258 ~~s~~  262 (276)
                      +|--.
T Consensus       260 cFgGk  264 (310)
T KOG4499|consen  260 CFGGK  264 (310)
T ss_pred             EecCC
Confidence            99644

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.74  E-value=0.01  Score=44.93  Aligned_cols=149  Identities=15%  Similarity=0.247  Sum_probs=85.9

Q ss_pred             CcEEEEEEcCCCCEEEEeecCCeEEEEEccCCe------eeeeee-----eeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822           35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAAT------CLKTIN-----SKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (276)
Q Consensus        35 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i  103 (276)
                      +-.-.+++..++.++++.-.++.+.++++....      ....+.     .++..+-.++|.+.++.|+++-.   ....
T Consensus        65 ~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE---~~P~  141 (248)
T PF06977_consen   65 GDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE---RKPK  141 (248)
T ss_dssp             SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE---SSSE
T ss_pred             CCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC---CCCh
Confidence            456778888777777766568999999884321      111221     23456899999999999888876   6666


Q ss_pred             EEEEccC---Cceee--ee------cccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCceeeeeEeec---------
Q 023822          104 RLLSLHD---NKYLR--YF------KGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQ---------  162 (276)
Q Consensus       104 ~~~d~~~---~~~~~--~~------~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~---------  162 (276)
                      .+|.+..   .....  ..      ......+.+++++|... +++.......|..+| .+++.+..+...         
T Consensus       142 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~  220 (248)
T PF06977_consen  142 RLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKD  220 (248)
T ss_dssp             EEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS-
T ss_pred             hhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccc
Confidence            6776654   21111  11      12334578899999654 666667788899999 666666655222         


Q ss_pred             --CCCeeEecCCCcEEEEeeCCeEEEE
Q 023822          163 --GRPAAAYDDQGLVFAVAFGGYIRMF  187 (276)
Q Consensus       163 --~~~~~~~~~~~~~l~~~~d~~i~~~  187 (276)
                        ....+++.++|++++++.-+..++|
T Consensus       221 ~~QpEGIa~d~~G~LYIvsEpNlfy~f  247 (248)
T PF06977_consen  221 IPQPEGIAFDPDGNLYIVSEPNLFYRF  247 (248)
T ss_dssp             --SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred             cCCccEEEECCCCCEEEEcCCceEEEe
Confidence              2447999999998888875555544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.71  E-value=0.011  Score=44.63  Aligned_cols=187  Identities=13%  Similarity=0.117  Sum_probs=109.8

Q ss_pred             eEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCc-ceEEEEeccCCCEEEEeeCCCeEEEEeccCceeee
Q 023822           79 VDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHD-RVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG  157 (276)
Q Consensus        79 v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  157 (276)
                      ...+.|..++..+-+.+.-| ...|+.+|+.+++......-... ---.++.. +++...-.=.++...+||..+.+.+.
T Consensus        47 TQGL~~~~~g~LyESTG~yG-~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~  124 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYG-QSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIG  124 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTT-EEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred             CccEEecCCCEEEEeCCCCC-cEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEE
Confidence            56778877777777766633 56899999999987655432211 11233333 23344444468899999999998888


Q ss_pred             eEeec-CCCeeEecCCC-cEEEEeeCCeEEEEecccCCCCCeeeeeecC-CCCCceEEEECCCCcEEEEeecCCcEEEEE
Q 023822          158 LLRVQ-GRPAAAYDDQG-LVFAVAFGGYIRMFDARKYEKGPFDIFSVGG-DISDANVVKFSNDGRLMLLTTMEGHIHVLD  234 (276)
Q Consensus       158 ~~~~~-~~~~~~~~~~~-~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  234 (276)
                      .++.. .-..++  .++ .++.+.....++++|..+.+..........+ .-..++.+.|- +|...|=.=....|...|
T Consensus       125 ~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Id  201 (264)
T PF05096_consen  125 TFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRID  201 (264)
T ss_dssp             EEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEE
T ss_pred             EEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEe
Confidence            88433 334555  334 4444444789999998876532211111111 12245556665 676666666677899999


Q ss_pred             CCCCcEEEEeecCC------------CCCCceEEEEECCCCcEEEEec
Q 023822          235 SFRGTLLSTYNVKP------------VSRNSTLEASFSPEGMFVISGR  270 (276)
Q Consensus       235 ~~~~~~~~~~~~~~------------~~~~~v~~~~~s~~g~~l~~~~  270 (276)
                      ..+|+....+....            ....-.+.+|+.|..+.|...|
T Consensus       202 p~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  202 PETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             TTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             CCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            99999988764210            1134589999998776554443

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.66  E-value=0.024  Score=46.90  Aligned_cols=160  Identities=13%  Similarity=0.110  Sum_probs=88.1

Q ss_pred             eEEEEEeccCCeEEEeccCCC--CCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCC-----------eE
Q 023822           79 VDLVCFTSHPTTVIYSSKNGW--DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR-----------TV  145 (276)
Q Consensus        79 v~~~~~~~~~~~l~~~~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----------~i  145 (276)
                      +....++|++++++.+-..+.  ...++++|+.+++.+...-. ......+.|.++++.|+....+.           .|
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-ccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            446789999999987743211  24699999999976653211 11223499999988766554332           37


Q ss_pred             EEEeccCceee--eeEeec--C--CCeeEecCCCcEEEEee----C-CeEEEEecccCCCCCeeeeeecCCCCCceEEEE
Q 023822          146 LLWDQRAEKCQ--GLLRVQ--G--RPAAAYDDQGLVFAVAF----G-GYIRMFDARKYEKGPFDIFSVGGDISDANVVKF  214 (276)
Q Consensus       146 ~iwd~~~~~~~--~~~~~~--~--~~~~~~~~~~~~l~~~~----d-~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~  214 (276)
                      +.|.+.+....  ..+...  .  ...+..++++++++...    + ..+.+.|+............+......+....-
T Consensus       205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~  284 (414)
T PF02897_consen  205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD  284 (414)
T ss_dssp             EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred             EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence            88888766443  233221  1  23677889998877654    3 568888887641001112222222223333222


Q ss_pred             CCCCcEEEEee---cCCcEEEEECCCCc
Q 023822          215 SNDGRLMLLTT---MEGHIHVLDSFRGT  239 (276)
Q Consensus       215 ~~~~~~l~~~~---~dg~i~i~d~~~~~  239 (276)
                      +.++.+++...   ..+.|.-.++.+..
T Consensus       285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~  312 (414)
T PF02897_consen  285 HHGDRLYILTNDDAPNGRLVAVDLADPS  312 (414)
T ss_dssp             EETTEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred             ccCCEEEEeeCCCCCCcEEEEecccccc
Confidence            33444444433   34567777777665

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.65  E-value=0.02  Score=45.76  Aligned_cols=226  Identities=13%  Similarity=0.094  Sum_probs=106.6

Q ss_pred             EEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEe--ccCCeEEEeccC-------------------
Q 023822           39 SMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFT--SHPTTVIYSSKN-------------------   97 (276)
Q Consensus        39 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~~-------------------   97 (276)
                      ...++|+.+.++-......|+-.|+++.+....+.....-+-...|.  .++..++..-..                   
T Consensus        85 g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a  164 (386)
T PF14583_consen   85 GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEA  164 (386)
T ss_dssp             T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC
T ss_pred             ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhh
Confidence            45667877887665556788889999988766666665555445554  344444332110                   


Q ss_pred             CCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCC-----eEEEEeccCc-eeeeeEeecC----CCee
Q 023822           98 GWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR-----TVLLWDQRAE-KCQGLLRVQG----RPAA  167 (276)
Q Consensus        98 ~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~-~~~~~~~~~~----~~~~  167 (276)
                      .....|.-.|+.+++....+. -...+..+.|+|....+++=+..|     .-+||-+++. .....++...    +..-
T Consensus       165 ~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHE  243 (386)
T PF14583_consen  165 RPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHE  243 (386)
T ss_dssp             ---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEE
T ss_pred             CCCceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccc
Confidence            013456666777776544443 566778899999665444433322     1255655432 1222221111    2244


Q ss_pred             EecCCCcEEEE-ee-----CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCC-------------
Q 023822          168 AYDDQGLVFAV-AF-----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG-------------  228 (276)
Q Consensus       168 ~~~~~~~~l~~-~~-----d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-------------  228 (276)
                      .|.|+|..+.. +.     +..|.-+|+.+.+..  .....    .+......++||++++-=+.|.             
T Consensus       244 fw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~--~~~~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~  317 (386)
T PF14583_consen  244 FWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR--RLMEM----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIE  317 (386)
T ss_dssp             EE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE--EEEEE-----SEEEEEE-TTSSEEEEEE----------------
T ss_pred             cccCCCCEEEEEeecCCCCceEEEeeCCCCCCce--EEEeC----CceeeeEEcCCCCEEEecCCCCCccccccccceec
Confidence            67888855443 22     345667777765431  11111    1344566778998765433331             


Q ss_pred             ---cEEEEECCCCcEEEEeec------CCCCC-CceEEEEECCCCcEEEEecC
Q 023822          229 ---HIHVLDSFRGTLLSTYNV------KPVSR-NSTLEASFSPEGMFVISGRV  271 (276)
Q Consensus       229 ---~i~i~d~~~~~~~~~~~~------~~~~~-~~v~~~~~s~~g~~l~~~~~  271 (276)
                         .|++++...+........      ..++. ..=....|+|||++++..|.
T Consensus       318 ~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd  370 (386)
T PF14583_consen  318 NDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSD  370 (386)
T ss_dssp             ---EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-
T ss_pred             CCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECC
Confidence               466788877665322220      00000 01235789999998765543

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.65  E-value=0.00027  Score=38.01  Aligned_cols=34  Identities=15%  Similarity=0.325  Sum_probs=30.1

Q ss_pred             CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCee
Q 023822           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATC   68 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~   68 (276)
                      ..+|.+++|+|...+||.+..+|.|.++.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            457999999999999999999999999998 5543

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.62  E-value=0.016  Score=49.67  Aligned_cols=219  Identities=11%  Similarity=0.095  Sum_probs=113.3

Q ss_pred             CCCEEEEeecCC------eEEEEEccCCeeee--eeeeeeeceEEEEEeccCCeEEEeccC-C--CCCceEEEEccCCce
Q 023822           45 SSSYLVTASDDE------SIRLYDVTAATCLK--TINSKKYGVDLVCFTSHPTTVIYSSKN-G--WDESLRLLSLHDNKY  113 (276)
Q Consensus        45 ~~~~l~~~~~d~------~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~~-~--~d~~i~~~d~~~~~~  113 (276)
                      .+.+++.|+.++      .+..+|..+++...  .+.... .-.+++.. ++...++|+.+ +  .-..+..||..+++-
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r-~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W  361 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPR-CRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW  361 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCccc-ccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce
Confidence            456777887763      67788887764332  222222 22233333 55677777763 1  125677888877653


Q ss_pred             ee--eecccCcceEEEEeccCCCEEEEeeCCCe-----EEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-C--
Q 023822          114 LR--YFKGHHDRVVSLSLCSSKDCFISGSLDRT-----VLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-G--  181 (276)
Q Consensus       114 ~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-----i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d--  181 (276)
                      ..  .+...........  -+|.+.++|+.||.     +-.||.++.+-...-  ...........-++++.++|. +  
T Consensus       362 ~~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~  439 (571)
T KOG4441|consen  362 TPVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGS  439 (571)
T ss_pred             eccCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCC
Confidence            22  2221222211111  27788999999864     777887765433222  111111222334566666555 3  


Q ss_pred             ----CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCC-----cEEEEECCCCcEEEEeecCCCCCC
Q 023822          182 ----GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG-----HIHVLDSFRGTLLSTYNVKPVSRN  252 (276)
Q Consensus       182 ----~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~  252 (276)
                          ..+..||..+..=.  ....+........ ++ .-++.+.+.|+.|+     +|..||..+.+....-... ....
T Consensus       440 ~~~l~sve~YDP~t~~W~--~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~-~~rs  514 (571)
T KOG4441|consen  440 SNCLNSVECYDPETNTWT--LIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMT-SPRS  514 (571)
T ss_pred             ccccceEEEEcCCCCcee--ecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCc-cccc
Confidence                46788888774411  1111111111112 22 22567788888776     3777888776655442211 1122


Q ss_pred             ceEEEEECCCCcEEEEecCCCC
Q 023822          253 STLEASFSPEGMFVISGRVSPF  274 (276)
Q Consensus       253 ~v~~~~~s~~g~~l~~~~~dg~  274 (276)
                      .+..+  .-+++..++|+.||.
T Consensus       515 ~~g~~--~~~~~ly~vGG~~~~  534 (571)
T KOG4441|consen  515 AVGVV--VLGGKLYAVGGFDGN  534 (571)
T ss_pred             cccEE--EECCEEEEEecccCc
Confidence            22112  236678888888875

>PHA02713 hypothetical protein; Provisional

Probab=97.59  E-value=0.009  Score=51.21  Aligned_cols=194  Identities=10%  Similarity=0.086  Sum_probs=96.2

Q ss_pred             CCCEEEEeecC------CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCC--CCceEEEEccCCceee-
Q 023822           45 SSSYLVTASDD------ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW--DESLRLLSLHDNKYLR-  115 (276)
Q Consensus        45 ~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~--d~~i~~~d~~~~~~~~-  115 (276)
                      ++...+.|+.+      ..+..||..+......-.-....-......-+++..+.|+..+.  -..+..||..+++-.. 
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~  382 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML  382 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence            45666677643      34677887765432111111111111222236677777775221  1358889987664221 


Q ss_pred             -eecccCcceEEEEeccCCCEEEEeeCCC-----------------------eEEEEeccCceeeee--EeecCCCeeEe
Q 023822          116 -YFKGHHDRVVSLSLCSSKDCFISGSLDR-----------------------TVLLWDQRAEKCQGL--LRVQGRPAAAY  169 (276)
Q Consensus       116 -~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----------------------~i~iwd~~~~~~~~~--~~~~~~~~~~~  169 (276)
                       .+.........+.  -+++..+.|+.++                       .+..||.++.+-...  +..........
T Consensus       383 ~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~  460 (557)
T PHA02713        383 PDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV  460 (557)
T ss_pred             CCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEE
Confidence             2221111111222  2677777777652                       477788777654322  21122222222


Q ss_pred             cCCCcEEEEee-C------CeEEEEeccc-CCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCC--cEEEEECCCCc
Q 023822          170 DDQGLVFAVAF-G------GYIRMFDARK-YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG--HIHVLDSFRGT  239 (276)
Q Consensus       170 ~~~~~~l~~~~-d------~~i~~~d~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~  239 (276)
                      .-++++.+.|. +      ..+..||.++ .+  ......+.........+++  +|+..++|+.++  .+..||..+.+
T Consensus       461 ~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~--W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        461 SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNG--WELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             EECCEEEEEeCCCCCCccceeEEEecCCCCCC--eeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence            33455555554 3      2467888876 22  1112222222222233333  678888898888  67788887766


Q ss_pred             EEEEe
Q 023822          240 LLSTY  244 (276)
Q Consensus       240 ~~~~~  244 (276)
                      -....
T Consensus       537 W~~~~  541 (557)
T PHA02713        537 WNHIC  541 (557)
T ss_pred             ccchh
Confidence            55433

>PRK10115 protease 2; Provisional

Probab=97.59  E-value=0.046  Score=48.21  Aligned_cols=195  Identities=11%  Similarity=0.053  Sum_probs=100.9

Q ss_pred             CcEEEEEEcCCCCEEEEee-----cCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCC---CCCceEEE
Q 023822           35 GRISSMDFHKSSSYLVTAS-----DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG---WDESLRLL  106 (276)
Q Consensus        35 ~~v~~~~~~~~~~~l~~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~---~d~~i~~~  106 (276)
                      -.+..+.++||+++|+.+.     +...|++.|+.+++.+.......  -..++|.++++.|+......   ....|+.+
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h  204 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRH  204 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence            3466788999999888653     23468899998876432221111  14589999998887765421   13568888


Q ss_pred             EccCC--ceeeeecccCcceE-EEEeccCCCEEEEeeC---CCeEEEEecc--CceeeeeE-eecCCCeeEecCCCcEEE
Q 023822          107 SLHDN--KYLRYFKGHHDRVV-SLSLCSSKDCFISGSL---DRTVLLWDQR--AEKCQGLL-RVQGRPAAAYDDQGLVFA  177 (276)
Q Consensus       107 d~~~~--~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~---d~~i~iwd~~--~~~~~~~~-~~~~~~~~~~~~~~~~l~  177 (276)
                      ++.++  +-...+........ ....+.++++++..+.   ++.+.+++..  .+.....+ .......-..+..+.+++
T Consensus       205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~  284 (686)
T PRK10115        205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHYQHRFYL  284 (686)
T ss_pred             ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeCCCEEEE
Confidence            88877  33333443333333 3333447776554443   3578888853  23322222 222222112233344444


Q ss_pred             Eee-C---CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEE
Q 023822          178 VAF-G---GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD  234 (276)
Q Consensus       178 ~~~-d---~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  234 (276)
                      ... +   ..|...++....  .............+..+.+. .+.++++...+|.-+++-
T Consensus       285 ~tn~~~~~~~l~~~~~~~~~--~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~  342 (686)
T PRK10115        285 RSNRHGKNFGLYRTRVRDEQ--QWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQ  342 (686)
T ss_pred             EEcCCCCCceEEEecCCCcc--cCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEE
Confidence            443 2   234444444211  11121111123367777776 335555566676644443

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.58  E-value=0.038  Score=47.06  Aligned_cols=189  Identities=16%  Similarity=0.142  Sum_probs=110.1

Q ss_pred             CCEEEEeecCCeEEEEEccCCeeeeeeeeee-eceE----------EEEEeccCCeEEEeccCCCCCceEEEEccCCcee
Q 023822           46 SSYLVTASDDESIRLYDVTAATCLKTINSKK-YGVD----------LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL  114 (276)
Q Consensus        46 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~----------~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~  114 (276)
                      +..|+.++.++.|.-.|..+|+.+-.+.... ..+.          .+++  .+..+++++.   ++.|.-.|..+++.+
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~---dg~l~ALDa~TGk~~  143 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTL---DARLVALDAKTGKVV  143 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcC---CCEEEEEECCCCCEE
Confidence            4567777778899999999998877664321 1111          1122  2345666666   899999999999988


Q ss_pred             eeecccCcc-eEEEEecc---CCCEEEEee------CCCeEEEEeccCceeeeeEeecCC--------------------
Q 023822          115 RYFKGHHDR-VVSLSLCS---SKDCFISGS------LDRTVLLWDQRAEKCQGLLRVQGR--------------------  164 (276)
Q Consensus       115 ~~~~~~~~~-i~~~~~~~---~~~~l~~~~------~d~~i~iwd~~~~~~~~~~~~~~~--------------------  164 (276)
                      ......... -..+.-+|   ++ .++.+.      .+|.|.-+|.++++.+-.+...+.                    
T Consensus       144 W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~t  222 (527)
T TIGR03075       144 WSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKT  222 (527)
T ss_pred             eecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCC
Confidence            765421100 00111112   34 444443      268899999999887655411100                    


Q ss_pred             --------------CeeEecCCCcEEEEee-C-----C-----------eEEEEecccCCCCCeeeeeecCCC-------
Q 023822          165 --------------PAAAYDDQGLVFAVAF-G-----G-----------YIRMFDARKYEKGPFDIFSVGGDI-------  206 (276)
Q Consensus       165 --------------~~~~~~~~~~~l~~~~-d-----~-----------~i~~~d~~~~~~~~~~~~~~~~~~-------  206 (276)
                                    ..++++|...++..+. +     +           .|.-.|+++++..-.  ++...|.       
T Consensus       223 w~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~--~Q~~~~D~wD~d~~  300 (527)
T TIGR03075       223 WPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWH--YQTTPHDEWDYDGV  300 (527)
T ss_pred             CCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEe--eeCCCCCCccccCC
Confidence                          0346666555555444 1     1           556666666654211  1111121       


Q ss_pred             CCceEEEECCCCc---EEEEeecCCcEEEEECCCCcEEE
Q 023822          207 SDANVVKFSNDGR---LMLLTTMEGHIHVLDSFRGTLLS  242 (276)
Q Consensus       207 ~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~  242 (276)
                      .+..-+.+..+|+   .++.+..+|.+++.|..+|+.+.
T Consensus       301 ~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~  339 (527)
T TIGR03075       301 NEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS  339 (527)
T ss_pred             CCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence            1112223334665   78889999999999999999863

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.56  E-value=0.019  Score=43.37  Aligned_cols=195  Identities=12%  Similarity=0.064  Sum_probs=111.3

Q ss_pred             ccccceeeccCCC-cEEEEEEcCCCCEEEEeecCC--eEEEEEccCCeeeeeeeeeee-ceEEEEEeccCCeEEEeccCC
Q 023822           23 SMEVGMSFRDYNG-RISSMDFHKSSSYLVTASDDE--SIRLYDVTAATCLKTINSKKY-GVDLVCFTSHPTTVIYSSKNG   98 (276)
Q Consensus        23 ~~~~~~~~~~h~~-~v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~~~   98 (276)
                      .++.+.++..... -...+.|..++.++-+.+.-|  .|+.+|+.+++......-... ---.++.. +++.....-.  
T Consensus        32 ~~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk--  108 (264)
T PF05096_consen   32 SYEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWK--  108 (264)
T ss_dssp             EEEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESS--
T ss_pred             eeEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEec--
Confidence            3455555543222 344688877788777777666  789999999987765543221 11223333 2233333334  


Q ss_pred             CCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe--ec-----CCCeeEecC
Q 023822           99 WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR--VQ-----GRPAAAYDD  171 (276)
Q Consensus        99 ~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~-----~~~~~~~~~  171 (276)
                       ++...+||..+.+.+.++. ..+.=+.++  .+++.|+.......|+.+|..+.+....+.  ..     ..+.+.+- 
T Consensus       109 -~~~~f~yd~~tl~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-  183 (264)
T PF05096_consen  109 -EGTGFVYDPNTLKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-  183 (264)
T ss_dssp             -SSEEEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-
T ss_pred             -CCeEEEEccccceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-
Confidence             8999999999988888775 345557776  467777777777889999988877666652  11     22334443 


Q ss_pred             CCcEEEEee-CCeEEEEecccCCCCCee----eee---e----cCCCCCceEEEECCCCcEEEEee
Q 023822          172 QGLVFAVAF-GGYIRMFDARKYEKGPFD----IFS---V----GGDISDANVVKFSNDGRLMLLTT  225 (276)
Q Consensus       172 ~~~~l~~~~-d~~i~~~d~~~~~~~~~~----~~~---~----~~~~~~i~~~~~~~~~~~l~~~~  225 (276)
                      +|.+.|--. ...|...|..+++.....    +..   .    .....-.+.||+.|....|+..+
T Consensus       184 ~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  184 NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            566555555 677777777776521100    000   0    01134578899998765555444

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.56  E-value=0.0052  Score=48.10  Aligned_cols=139  Identities=17%  Similarity=0.144  Sum_probs=78.8

Q ss_pred             EEeccCCC-EEEEeeCCCeEEEEeccCceeeeeEeecCCCe-eEecCCCcEEEEeeCCeEEEEecccCCC-CCeeeeeec
Q 023822          127 LSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA-AAYDDQGLVFAVAFGGYIRMFDARKYEK-GPFDIFSVG  203 (276)
Q Consensus       127 ~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~d~~i~~~d~~~~~~-~~~~~~~~~  203 (276)
                      ..|.++.. ++.+--..+.|.-||..+++.........+.+ ......+.++++..  .+.+++.+.... .........
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~  107 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDG  107 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCC
Confidence            35666666 44455557789999988665444333333444 34444555544433  345556543332 111111111


Q ss_pred             CCCCCceEEEECCCCcEEEEeec-----------CCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecC
Q 023822          204 GDISDANVVKFSNDGRLMLLTTM-----------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRV  271 (276)
Q Consensus       204 ~~~~~i~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  271 (276)
                      ......+.+...|+|.+.+....           -|.|+.+|. .+...+.+.   .+-..-+.++||||++.|+.+..
T Consensus       108 ~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~---~~~~~~NGla~SpDg~tly~aDT  182 (307)
T COG3386         108 LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLD---DDLTIPNGLAFSPDGKTLYVADT  182 (307)
T ss_pred             CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeec---CcEEecCceEECCCCCEEEEEeC
Confidence            22346778899999987665433           133444443 566666665   34556678999999988877655

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.56  E-value=0.0011  Score=58.46  Aligned_cols=101  Identities=16%  Similarity=0.223  Sum_probs=73.6

Q ss_pred             CCEEEEeecCCeEEEEEccCC-eeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcce
Q 023822           46 SSYLVTASDDESIRLYDVTAA-TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRV  124 (276)
Q Consensus        46 ~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i  124 (276)
                      +..++.|+..|.+...|+... .+...-..-.++|++++|+.+|..++.|-.   +|.|.+||+..++..+.+..|..+.
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~---~G~V~v~D~~~~k~l~~i~e~~ap~  175 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLG---DGHVTVWDMHRAKILKVITEHGAPV  175 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccC---CCcEEEEEccCCcceeeeeecCCcc
Confidence            456788888888888886542 111112233578999999999999999988   9999999999999988887776655


Q ss_pred             EEEE---eccCCCEEEEeeCCCeEEEEecc
Q 023822          125 VSLS---LCSSKDCFISGSLDRTVLLWDQR  151 (276)
Q Consensus       125 ~~~~---~~~~~~~l~~~~~d~~i~iwd~~  151 (276)
                      ..+-   +..++..++++...|.  +|.+.
T Consensus       176 t~vi~v~~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  176 TGVIFVGRTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             ceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence            5443   4445567888887776  55543

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.56  E-value=0.00066  Score=59.72  Aligned_cols=104  Identities=14%  Similarity=0.174  Sum_probs=74.2

Q ss_pred             eEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEee
Q 023822          167 AAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  245 (276)
Q Consensus       167 ~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  245 (276)
                      ++..-.+..++.++ .|.+...|+...-. +  ...-..-..+|++++|+.+|+.++.|-.+|.|.+||+..++.++.+.
T Consensus        93 ~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~-~--~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~  169 (1206)
T KOG2079|consen   93 ISSAIVVVPIVIGTSHGHVLLSDMTGNLG-P--LHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT  169 (1206)
T ss_pred             eeeeeeeeeEEEEcCchhhhhhhhhcccc-h--hhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee
Confidence            33333445566666 58888888876311 1  22333445789999999999999999999999999999999999887


Q ss_pred             cCCCCCCceEEEEECCCCcEEEEecCCC
Q 023822          246 VKPVSRNSTLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       246 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg  273 (276)
                      .+......+..+.+..++..++++...|
T Consensus       170 e~~ap~t~vi~v~~t~~nS~llt~D~~G  197 (1206)
T KOG2079|consen  170 EHGAPVTGVIFVGRTSQNSKLLTSDTGG  197 (1206)
T ss_pred             ecCCccceEEEEEEeCCCcEEEEccCCC
Confidence            5433334455556666677788877766

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.55  E-value=0.00041  Score=37.33  Aligned_cols=35  Identities=17%  Similarity=0.114  Sum_probs=30.5

Q ss_pred             CCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcE
Q 023822          205 DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL  240 (276)
Q Consensus       205 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  240 (276)
                      ....|..++|+|...+||.++.+|.|.+|.+ +++.
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            3457899999999999999999999999998 5554

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.54  E-value=0.026  Score=44.09  Aligned_cols=226  Identities=10%  Similarity=0.078  Sum_probs=105.7

Q ss_pred             EEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeee---eeeceEEEEEeccCCeEEEeccCCCCCceEEEEccC-Cc
Q 023822           37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS---KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD-NK  112 (276)
Q Consensus        37 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~-~~  112 (276)
                      ..++.|..+ ..+++ +..+ +.+...+.|+.-..+..   -......+....++...+++ .   .|.|  |.... ++
T Consensus        64 l~~I~f~~~-~g~iv-G~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~-~---~G~i--y~T~DgG~  134 (302)
T PF14870_consen   64 LNSISFDGN-EGWIV-GEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAG-D---RGAI--YRTTDGGK  134 (302)
T ss_dssp             EEEEEEETT-EEEEE-EETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEE-T---T--E--EEESSTTS
T ss_pred             EEEEEecCC-ceEEE-cCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEc-C---CCcE--EEeCCCCC
Confidence            567777643 34444 4555 33444444543333321   11223334443344333333 2   4443  33222 22


Q ss_pred             e-eeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCc--eeeeeEeecCCCeeEecCCCcEEEEeeCCeEEEEec
Q 023822          113 Y-LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE--KCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDA  189 (276)
Q Consensus       113 ~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~  189 (276)
                      . ........+.+..+.-++++++++++.......-||--..  ++........+..+.|.|++.+..++..|.|++=+.
T Consensus       135 tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~  214 (302)
T PF14870_consen  135 TWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDD  214 (302)
T ss_dssp             SEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-
T ss_pred             CeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccC
Confidence            2 2223344567888888999998888876666667775432  222222345567899999999988888899888872


Q ss_pred             -ccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEE
Q 023822          190 -RKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS  268 (276)
Q Consensus       190 -~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  268 (276)
                       ...+.-.............+..++|.+++...++|+ .|.+ +.....|+.=+...........+..+.|.++.+-++.
T Consensus       215 ~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l  292 (302)
T PF14870_consen  215 PDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL  292 (302)
T ss_dssp             TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE
T ss_pred             CCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEE
Confidence             221110001111222333578899999988777665 4433 4555666655554422234566888898776555554


Q ss_pred             ecCCCC
Q 023822          269 GRVSPF  274 (276)
Q Consensus       269 ~~~dg~  274 (276)
                      | .+|.
T Consensus       293 G-~~G~  297 (302)
T PF14870_consen  293 G-QDGV  297 (302)
T ss_dssp             --STTE
T ss_pred             C-CCcE
Confidence            4 4543

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.52  E-value=0.027  Score=43.94  Aligned_cols=153  Identities=12%  Similarity=0.061  Sum_probs=79.5

Q ss_pred             eeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEec-cC
Q 023822           74 SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQ-RA  152 (276)
Q Consensus        74 ~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~-~~  152 (276)
                      ...+.+..+.-++++++++++..   .....-||.-...-...-+.....|..|.|.|++.+.+.+ +.|.|+.=+. ..
T Consensus       142 ~~~gs~~~~~r~~dG~~vavs~~---G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~  217 (302)
T PF14870_consen  142 ETSGSINDITRSSDGRYVAVSSR---GNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDD  217 (302)
T ss_dssp             S----EEEEEE-TTS-EEEEETT---SSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTE
T ss_pred             CCcceeEeEEECCCCcEEEEECc---ccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCC
Confidence            34467888888999999999875   4455577754322222233356789999999998765544 8888888772 22


Q ss_pred             ceeeee--E----eecCCCeeEecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeec
Q 023822          153 EKCQGL--L----RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM  226 (276)
Q Consensus       153 ~~~~~~--~----~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  226 (276)
                      .+.-..  .    ....+..+++.+++.+.+++..|.+. .....++.- ........-...+..+.|.+..+-++.| .
T Consensus       218 ~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~-~S~DgGktW-~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~  294 (302)
T PF14870_consen  218 GETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLL-VSTDGGKTW-QKDRVGENVPSNLYRIVFVNPDKGFVLG-Q  294 (302)
T ss_dssp             EEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EE-EESSTTSS--EE-GGGTTSSS---EEEEEETTEEEEE--S
T ss_pred             ccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEE-EeCCCCccc-eECccccCCCCceEEEEEcCCCceEEEC-C
Confidence            221111  1    22224578999999999998887544 333333321 1111122334567888888765655544 6


Q ss_pred             CCcEEEE
Q 023822          227 EGHIHVL  233 (276)
Q Consensus       227 dg~i~i~  233 (276)
                      +|.|.-|
T Consensus       295 ~G~ll~~  301 (302)
T PF14870_consen  295 DGVLLRY  301 (302)
T ss_dssp             TTEEEEE
T ss_pred             CcEEEEe
Confidence            7876555

>PHA02713 hypothetical protein; Provisional

Probab=97.50  E-value=0.029  Score=48.16  Aligned_cols=205  Identities=8%  Similarity=0.037  Sum_probs=97.5

Q ss_pred             eEEEEEccCCeeee--eeeeeeeceEEEEEeccCCeEEEeccCC---CCCceEEEEccCCcee--eeecccCcceEEEEe
Q 023822           57 SIRLYDVTAATCLK--TINSKKYGVDLVCFTSHPTTVIYSSKNG---WDESLRLLSLHDNKYL--RYFKGHHDRVVSLSL  129 (276)
Q Consensus        57 ~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~~~---~d~~i~~~d~~~~~~~--~~~~~~~~~i~~~~~  129 (276)
                      .+..||..+++...  .+...... .+++ ..++...++|+...   .-..+..||+.++.-.  ..+....... +++ 
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a-~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~-  348 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIIN-YASA-IVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA-  348 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccc-eEEE-EECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE-
Confidence            46778887654322  22211111 1222 23566666666421   1245778888766422  1111111111 122 


Q ss_pred             ccCCCEEEEeeCCC-----eEEEEeccCceeee--eEeecCCCeeEecCCCcEEEEee-C--------------------
Q 023822          130 CSSKDCFISGSLDR-----TVLLWDQRAEKCQG--LLRVQGRPAAAYDDQGLVFAVAF-G--------------------  181 (276)
Q Consensus       130 ~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~-d--------------------  181 (276)
                      .-+++..+.|+.++     ++..||..+.+-..  .+........+..-++++++.|+ +                    
T Consensus       349 ~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~  428 (557)
T PHA02713        349 VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT  428 (557)
T ss_pred             EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccc
Confidence            23677888888754     47889988764332  11111111111223566666654 3                    


Q ss_pred             ---CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecC------CcEEEEECCC-CcEE--EEeecCCC
Q 023822          182 ---GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME------GHIHVLDSFR-GTLL--STYNVKPV  249 (276)
Q Consensus       182 ---~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~-~~~~--~~~~~~~~  249 (276)
                         ..+..||.++.+=  .....+........ ++ .-+|+..+.|+.+      ..+..||..+ .+-.  ..+.   .
T Consensus       429 ~~~~~ve~YDP~td~W--~~v~~m~~~r~~~~-~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~---~  501 (557)
T PHA02713        429 HSSNKVIRYDTVNNIW--ETLPNFWTGTIRPG-VV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE---S  501 (557)
T ss_pred             cccceEEEECCCCCeE--eecCCCCcccccCc-EE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC---c
Confidence               2477788766321  00111111111111 22 2356766777654      2467899876 4433  2222   1


Q ss_pred             CCCceEEEEECCCCcEEEEecCCCC
Q 023822          250 SRNSTLEASFSPEGMFVISGRVSPF  274 (276)
Q Consensus       250 ~~~~v~~~~~s~~g~~l~~~~~dg~  274 (276)
                      .......+.+  +|+..++||.||.
T Consensus       502 ~r~~~~~~~~--~~~iyv~Gg~~~~  524 (557)
T PHA02713        502 RLSALHTILH--DNTIMMLHCYESY  524 (557)
T ss_pred             ccccceeEEE--CCEEEEEeeecce
Confidence            2222222232  7888999998873

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.43  E-value=0.032  Score=42.57  Aligned_cols=195  Identities=12%  Similarity=0.163  Sum_probs=119.0

Q ss_pred             eeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecc-cCcceEEEEeccCCCEEEEeeCCCeEEEEecc
Q 023822           73 NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKG-HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR  151 (276)
Q Consensus        73 ~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~  151 (276)
                      .+....+.++.|+|+.+.|++...   ...-.++=-..|+.+.++.- .-...-.+.+..++++.++--+++.+.++.+.
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n---~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd  158 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTN---KPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVD  158 (316)
T ss_pred             ccccccccceeeCCCcceEEEecC---CCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence            344455999999999999998886   66666666667777776531 12223567777788777777778888888776


Q ss_pred             Cceeeee-----E------e-ecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCC-------CCCceE
Q 023822          152 AEKCQGL-----L------R-VQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGD-------ISDANV  211 (276)
Q Consensus       152 ~~~~~~~-----~------~-~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~-------~~~i~~  211 (276)
                      .......     +      + ..+...++|+|..+.+.... -+-+.+|.+..... .........+       -..+.+
T Consensus       159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~-~l~~~~~~~~~~~~~~f~~DvSg  237 (316)
T COG3204         159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPS-SLSVHASLDPTADRDLFVLDVSG  237 (316)
T ss_pred             CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCc-ccccccccCcccccceEeecccc
Confidence            5422211     1      1 22344799999887777777 45666666653321 1111111111       135677


Q ss_pred             EEECCC-CcEEEEeecCCcEEEEECCCCcEEEEeecCCC---CCC---ceEEEEECCCCcEEEEecCC
Q 023822          212 VKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV---SRN---STLEASFSPEGMFVISGRVS  272 (276)
Q Consensus       212 ~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~~---~v~~~~~s~~g~~l~~~~~d  272 (276)
                      +.|++. +.+|+-+.+++.+.-.|. .|..+..+....+   ...   ..-.++..++|.+.+++--+
T Consensus       238 l~~~~~~~~LLVLS~ESr~l~Evd~-~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPn  304 (316)
T COG3204         238 LEFNAITNSLLVLSDESRRLLEVDL-SGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPN  304 (316)
T ss_pred             ceecCCCCcEEEEecCCceEEEEec-CCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecCC
Confidence            889875 556666667777777774 5555554432211   111   23467888888765554333

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.42  E-value=0.034  Score=47.77  Aligned_cols=209  Identities=14%  Similarity=0.121  Sum_probs=103.9

Q ss_pred             ccccceeeccCCCcEEEEEEcCCCCEEEEeecC------CeEEEEEccCCeeee--eeeeeeeceEEEEEeccCCeEEEe
Q 023822           23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDD------ESIRLYDVTAATCLK--TINSKKYGVDLVCFTSHPTTVIYS   94 (276)
Q Consensus        23 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~   94 (276)
                      .+.....+.... .-.+++.. ++...++|+.|      .++..||..+.+-..  .+..........  .-++...++|
T Consensus       312 ~w~~~a~m~~~r-~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~--~l~g~iYavG  387 (571)
T KOG4441|consen  312 EWSSLAPMPSPR-CRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVA--VLDGKLYAVG  387 (571)
T ss_pred             cEeecCCCCccc-ccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeE--EECCEEEEEe
Confidence            344444443222 23344444 35778888888      357788877665332  122111111122  2267777777


Q ss_pred             ccCCC--CCceEEEEccCCcee--eeecccCcceEEEEeccCCCEEEEeeCCC------eEEEEeccCceeeeeEe--ec
Q 023822           95 SKNGW--DESLRLLSLHDNKYL--RYFKGHHDRVVSLSLCSSKDCFISGSLDR------TVLLWDQRAEKCQGLLR--VQ  162 (276)
Q Consensus        95 ~~~~~--d~~i~~~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~--~~  162 (276)
                      +.++.  -..+-.||..+.+-.  ..+...........  -++...++|+.++      ++..||..+.+-...-.  ..
T Consensus       388 G~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~--~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~  465 (571)
T KOG4441|consen  388 GFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV--LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTR  465 (571)
T ss_pred             ccccccccccEEEecCCCCcccccCCCCcceeeeEEEE--ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccc
Confidence            76321  134777887765422  22221111122222  2777888888654      57788887765443321  11


Q ss_pred             CC-CeeEecCCCcEEEEee-CC-----eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCC-----cE
Q 023822          163 GR-PAAAYDDQGLVFAVAF-GG-----YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG-----HI  230 (276)
Q Consensus       163 ~~-~~~~~~~~~~~l~~~~-d~-----~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i  230 (276)
                      .. ..++.- ++.+++.|+ |+     .+..||.++.+=  ............+..+.+  +++..++|+.||     +|
T Consensus       466 R~~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W--~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~v  540 (571)
T KOG4441|consen  466 RSGFGVAVL-NGKIYVVGGFDGTSALSSVERYDPETNQW--TMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTV  540 (571)
T ss_pred             cccceEEEE-CCEEEEECCccCCCccceEEEEcCCCCce--eEcccCccccccccEEEE--CCEEEEEecccCcccccee
Confidence            11 123333 445555444 54     477888876431  111112222222222222  566777787776     47


Q ss_pred             EEEECCCCcEEE
Q 023822          231 HVLDSFRGTLLS  242 (276)
Q Consensus       231 ~i~d~~~~~~~~  242 (276)
                      ..||..+.+-..
T Consensus       541 e~ydp~~d~W~~  552 (571)
T KOG4441|consen  541 ECYDPETDTWTE  552 (571)
T ss_pred             EEcCCCCCceee
Confidence            778776655443

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.41  E-value=0.034  Score=42.44  Aligned_cols=158  Identities=9%  Similarity=0.096  Sum_probs=105.0

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeee-eeceEEEEEeccCCeEEEeccCCCCCceEEEEcc
Q 023822           31 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSK-KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH  109 (276)
Q Consensus        31 ~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~  109 (276)
                      .+-...|.++.|+|+.+.|++......-.|+=...|+.+.++.-. -.....+.+..++++.++--.   ++.+.++.+.
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER---~~~l~~~~vd  158 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDER---DRALYLFTVD  158 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehh---cceEEEEEEc
Confidence            344556999999999998888777777777777789888887532 123456777767766666555   8888888776


Q ss_pred             CCceeeee----------cccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceee------------eeEeecCCCee
Q 023822          110 DNKYLRYF----------KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ------------GLLRVQGRPAA  167 (276)
Q Consensus       110 ~~~~~~~~----------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~------------~~~~~~~~~~~  167 (276)
                      ....+..+          ...+...-.++|.|....|..+-+-.-+.||........            ..+....+..+
T Consensus       159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl  238 (316)
T COG3204         159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL  238 (316)
T ss_pred             CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence            55322211          112556788999999998888888777777766533211            11123445677


Q ss_pred             EecCC-CcEEEEee-CCeEEEEeccc
Q 023822          168 AYDDQ-GLVFAVAF-GGYIRMFDARK  191 (276)
Q Consensus       168 ~~~~~-~~~l~~~~-d~~i~~~d~~~  191 (276)
                      .|++. +.+++.+. ++.+.-.|...
T Consensus       239 ~~~~~~~~LLVLS~ESr~l~Evd~~G  264 (316)
T COG3204         239 EFNAITNSLLVLSDESRRLLEVDLSG  264 (316)
T ss_pred             eecCCCCcEEEEecCCceEEEEecCC
Confidence            77764 56666666 57777777654

>PHA03098 kelch-like protein; Provisional

Probab=97.37  E-value=0.056  Score=46.37  Aligned_cols=190  Identities=9%  Similarity=0.059  Sum_probs=89.6

Q ss_pred             CCCEEEEeecCC------eEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCC--CCCceEEEEccCCceee-
Q 023822           45 SSSYLVTASDDE------SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG--WDESLRLLSLHDNKYLR-  115 (276)
Q Consensus        45 ~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~--~d~~i~~~d~~~~~~~~-  115 (276)
                      ++..++.|+.++      .+..||..+.+....-.............-++..++.|+..+  .-..+..||..+++-.. 
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~  373 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREE  373 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence            445666666432      467788776654221111111111112223566667776521  12457778877654221 


Q ss_pred             -eecccCcceEEEEeccCCCEEEEeeCC------CeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-C----
Q 023822          116 -YFKGHHDRVVSLSLCSSKDCFISGSLD------RTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-G----  181 (276)
Q Consensus       116 -~~~~~~~~i~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d----  181 (276)
                       .+...... .+++ .-+++.++.|+.+      ..+..||..+.+-...-  ........+...++++++.|. +    
T Consensus       374 ~~lp~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~  451 (534)
T PHA03098        374 PPLIFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDN  451 (534)
T ss_pred             CCcCcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCC
Confidence             11111111 1122 2356777777742      45888998876543221  111111122233455555554 2    


Q ss_pred             ----CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecC-----CcEEEEECCCCcE
Q 023822          182 ----GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME-----GHIHVLDSFRGTL  240 (276)
Q Consensus       182 ----~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~  240 (276)
                          ..+.+||..+.+=..  .............+.+  +++.++.|+.+     ..+.+||..+.+-
T Consensus       452 ~~~~~~v~~yd~~~~~W~~--~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W  515 (534)
T PHA03098        452 IKVYNIVESYNPVTNKWTE--LSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTW  515 (534)
T ss_pred             CcccceEEEecCCCCceee--CCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence                138888887643111  1111111111122222  67777777654     4688888876654

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.34  E-value=0.062  Score=43.90  Aligned_cols=40  Identities=23%  Similarity=0.428  Sum_probs=33.9

Q ss_pred             CCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEee
Q 023822          206 ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  245 (276)
Q Consensus       206 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  245 (276)
                      ...+.+++.+|++++.|+...-|+|.++|+.++..++.++
T Consensus       307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWK  346 (415)
T PF14655_consen  307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWK  346 (415)
T ss_pred             CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhc
Confidence            3456789999999988888777999999999988887776

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.31  E-value=0.00069  Score=49.20  Aligned_cols=127  Identities=13%  Similarity=0.024  Sum_probs=72.3

Q ss_pred             EEEEeeCCCeEEEEeccCceeeeeE---eecCCCeeEecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCc-e
Q 023822          135 CFISGSLDRTVLLWDQRAEKCQGLL---RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDA-N  210 (276)
Q Consensus       135 ~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i-~  210 (276)
                      .+..-+.||.|+-++++..+....-   ....  ....-....+++++.+|.|++|....... ....+.  .....+ .
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~--~~v~~~~~~~~vG~~dg~v~~~n~n~~g~-~~d~~~--s~~e~i~~  106 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCRSERFIDEG--QRVVTASAKLMVGTSDGAVYVFNWNLEGA-HSDRVC--SGEESIDL  106 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhhhhhhhhcc--eeecccCceEEeecccceEEEecCCccch-HHHhhh--ccccccee
Confidence            3445566888888887754432211   1111  11122234556666699999998873221 000111  111122 2


Q ss_pred             EEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCC-CceEEEEECCCCcEEEEe
Q 023822          211 VVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR-NSTLEASFSPEGMFVISG  269 (276)
Q Consensus       211 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~  269 (276)
                      .+.--.++.+.+++..||.|+.|++...+.+....   .|. .++..+..+..+++++.+
T Consensus       107 ~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g---~h~~~~~e~~ivv~sd~~i~~a  163 (238)
T KOG2444|consen  107 GIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG---QHNFESGEELIVVGSDEFLKIA  163 (238)
T ss_pred             ccccccccceeEEeccCCceeeeccccCceeeeec---cccCCCcceeEEecCCceEEee
Confidence            22223345688899999999999999888877666   454 555556666666666666

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.29  E-value=0.0011  Score=48.12  Aligned_cols=104  Identities=18%  Similarity=0.265  Sum_probs=60.6

Q ss_pred             CCEEEEeecCCeEEEEEccCC-eeeeeeeeeeeceEEEEE-eccCCeEEEeccCCCCCceEEEEccCCceeeeecccC-c
Q 023822           46 SSYLVTASDDESIRLYDVTAA-TCLKTINSKKYGVDLVCF-TSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHH-D  122 (276)
Q Consensus        46 ~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~-~  122 (276)
                      +..+++|+.+|.|.+|+..-. .....+......+-++-- ..++....+++.   ++.|+.|++.-.+.+.....|. .
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~---dg~ir~~n~~p~k~~g~~g~h~~~  146 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQ---DGRIRACNIKPNKVLGYVGQHNFE  146 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEecc---CCceeeeccccCceeeeeccccCC
Confidence            457889999999999987622 111111122222322222 223445666666   9999999998888777766666 3


Q ss_pred             ceEEEEeccCCCEEEEe--eCCCeEEEEeccC
Q 023822          123 RVVSLSLCSSKDCFISG--SLDRTVLLWDQRA  152 (276)
Q Consensus       123 ~i~~~~~~~~~~~l~~~--~~d~~i~iwd~~~  152 (276)
                      ++........++.++.+  +.|..++.|++..
T Consensus       147 ~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  147 SGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             CcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            44444444444444444  5555555555543

>PHA02790 Kelch-like protein; Provisional

Probab=97.28  E-value=0.074  Score=44.91  Aligned_cols=186  Identities=8%  Similarity=-0.058  Sum_probs=88.3

Q ss_pred             CCCEEEEeecCC-----eEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCcee--eee
Q 023822           45 SSSYLVTASDDE-----SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL--RYF  117 (276)
Q Consensus        45 ~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~--~~~  117 (276)
                      ++..++.|+.++     .+..||..+++....-.............-++...++|+..+ ...+..||..+++-.  ..+
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~-~~sve~ydp~~n~W~~~~~l  349 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPN-PTSVERWFHGDAAWVNMPSL  349 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCC-CCceEEEECCCCeEEECCCC
Confidence            345567777543     466788776543222111111111111223666666766522 356788887655322  122


Q ss_pred             cccCcceEEEEeccCCCEEEEeeCCC---eEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEeeCCeEEEEecccC
Q 023822          118 KGHHDRVVSLSLCSSKDCFISGSLDR---TVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKY  192 (276)
Q Consensus       118 ~~~~~~i~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~  192 (276)
                      ..........  .-+++..+.|+.++   .+..||.++.+-...-  ........+..-++++.+.|  |.+.+||.++.
T Consensus       350 ~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G--G~~e~ydp~~~  425 (480)
T PHA02790        350 LKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG--RNAEFYCESSN  425 (480)
T ss_pred             CCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC--CceEEecCCCC
Confidence            2111111112  23677778877653   4678888766443321  11111122223456666666  45678888653


Q ss_pred             CCCCeeeeeecCCCCCceEEEECCCCcEEEEeecC-----CcEEEEECCCCc
Q 023822          193 EKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME-----GHIHVLDSFRGT  239 (276)
Q Consensus       193 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~  239 (276)
                      +  ......+.........+.  -+|+..+.|+.+     ..+..||..+++
T Consensus       426 ~--W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        426 T--WTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             c--EeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCCCe
Confidence            2  111111111111222222  366777777754     246666665543

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.27  E-value=0.12  Score=45.93  Aligned_cols=195  Identities=15%  Similarity=0.156  Sum_probs=113.2

Q ss_pred             CCEEEEeecCCeEEEEEccCCeeeeeeeeeeec--------eEEEEEec----------------cCCeEEEeccCCCCC
Q 023822           46 SSYLVTASDDESIRLYDVTAATCLKTINSKKYG--------VDLVCFTS----------------HPTTVIYSSKNGWDE  101 (276)
Q Consensus        46 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--------v~~~~~~~----------------~~~~l~~~~~~~~d~  101 (276)
                      +..|+.++.++.|.-.|..+|+.+-.+......        ...+.+..                .+..++.++.   |+
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~---Dg  270 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTS---DA  270 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecC---CC
Confidence            557777888899999999999988776543210        12233321                2347777776   99


Q ss_pred             ceEEEEccCCceeeeecccCcceE-------------EEEecc--CCCEEEEeeC----------CCeEEEEeccCceee
Q 023822          102 SLRLLSLHDNKYLRYFKGHHDRVV-------------SLSLCS--SKDCFISGSL----------DRTVLLWDQRAEKCQ  156 (276)
Q Consensus       102 ~i~~~d~~~~~~~~~~~~~~~~i~-------------~~~~~~--~~~~l~~~~~----------d~~i~iwd~~~~~~~  156 (276)
                      .+.-.|.++++....+.. .+.+.             .+.-.|  .+..+++++.          +|.|+-+|.++++.+
T Consensus       271 ~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~  349 (764)
T TIGR03074       271 RLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV  349 (764)
T ss_pred             eEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence            999999999998876532 21110             111112  2345666643          688999999999877


Q ss_pred             eeEeecC-----------------C---CeeEecCCCcEEEEee-------------------CCeEEEEecccCCCCCe
Q 023822          157 GLLRVQG-----------------R---PAAAYDDQGLVFAVAF-------------------GGYIRMFDARKYEKGPF  197 (276)
Q Consensus       157 ~~~~~~~-----------------~---~~~~~~~~~~~l~~~~-------------------d~~i~~~d~~~~~~~~~  197 (276)
                      -.++...                 .   ...+++++..++....                   .+.|.-.|.++++..- 
T Consensus       350 W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W-  428 (764)
T TIGR03074       350 WAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERW-  428 (764)
T ss_pred             eEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEE-
Confidence            6653210                 0   1234444433333222                   2345555555554311 


Q ss_pred             eeeeecCCC-------CCceEEEECC-CCc---EEEEeecCCcEEEEECCCCcEEEEeec
Q 023822          198 DIFSVGGDI-------SDANVVKFSN-DGR---LMLLTTMEGHIHVLDSFRGTLLSTYNV  246 (276)
Q Consensus       198 ~~~~~~~~~-------~~i~~~~~~~-~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~  246 (276)
                       .+....|.       .+..-+.+.. +|+   .++.++.+|.++++|.++|+.+...+.
T Consensus       429 -~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e  487 (764)
T TIGR03074       429 -VFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEE  487 (764)
T ss_pred             -EecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeecee
Confidence             11111111       1111122322 553   788899999999999999999877653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=97.26  E-value=0.052  Score=44.07  Aligned_cols=142  Identities=14%  Similarity=0.158  Sum_probs=78.2

Q ss_pred             ceEEEEeccCCCEEEEee-----------CCC-eEEEEeccC--cee--eeeE--eecCCCeeEecCCCcEEEEeeCCeE
Q 023822          123 RVVSLSLCSSKDCFISGS-----------LDR-TVLLWDQRA--EKC--QGLL--RVQGRPAAAYDDQGLVFAVAFGGYI  184 (276)
Q Consensus       123 ~i~~~~~~~~~~~l~~~~-----------~d~-~i~iwd~~~--~~~--~~~~--~~~~~~~~~~~~~~~~l~~~~d~~i  184 (276)
                      ....|+|.++|+++++-.           ..+ .|.+++-..  ++.  ...+  .......+++.+++ ++++. ...|
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~-~~~i   92 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVAT-PPDI   92 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeC-CCeE
Confidence            456788999998776643           223 677776432  221  2222  23345678888998 55544 3445


Q ss_pred             EEE-ecccCCC---CCeeeee-ecC----CCCCceEEEECCCCcEEEEeecC-------------------CcEEEEECC
Q 023822          185 RMF-DARKYEK---GPFDIFS-VGG----DISDANVVKFSNDGRLMLLTTME-------------------GHIHVLDSF  236 (276)
Q Consensus       185 ~~~-d~~~~~~---~~~~~~~-~~~----~~~~i~~~~~~~~~~~l~~~~~d-------------------g~i~i~d~~  236 (276)
                      ..| |......   ....+.. +..    +......++|.|||.+.++-+..                   |.|.-++..
T Consensus        93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd  172 (367)
T TIGR02604        93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD  172 (367)
T ss_pred             EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence            444 5432111   1111211 222    13457789999999866654411                   445556654


Q ss_pred             CCcEEEEeecCCCCCCceEEEEECCCCcEEEEec
Q 023822          237 RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGR  270 (276)
Q Consensus       237 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  270 (276)
                      +++ +..+..  + -.....++|+|+|+++++-.
T Consensus       173 g~~-~e~~a~--G-~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       173 GGK-LRVVAH--G-FQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             CCe-EEEEec--C-cCCCccceECCCCCEEEEcc
Confidence            433 333331  2 23456899999999877644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.25  E-value=0.052  Score=41.29  Aligned_cols=146  Identities=14%  Similarity=0.181  Sum_probs=96.9

Q ss_pred             cceEEEEeccCCC-EEEEeeCCCe-EEEEeccCceeeeeEeecCCC----eeEecCCCcEEEEee-C-----CeEEEEec
Q 023822          122 DRVVSLSLCSSKD-CFISGSLDRT-VLLWDQRAEKCQGLLRVQGRP----AAAYDDQGLVFAVAF-G-----GYIRMFDA  189 (276)
Q Consensus       122 ~~i~~~~~~~~~~-~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~-d-----~~i~~~d~  189 (276)
                      ..-..|+++|... -++.+-+-|+ ..++|....+....+....-+    .-.|+|+|.+|.... |     |-|-+||.
T Consensus        68 aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~  147 (366)
T COG3490          68 ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDA  147 (366)
T ss_pred             cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEec
Confidence            3345677887554 4556666665 568898887776666332222    457999999998887 2     78999999


Q ss_pred             ccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeec------C------------CcEEEEECCCCcEEEEeecC-CCC
Q 023822          190 RKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM------E------------GHIHVLDSFRGTLLSTYNVK-PVS  250 (276)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------d------------g~i~i~d~~~~~~~~~~~~~-~~~  250 (276)
                      +..-   ..+-.+..|.-....+.+.+||+.++.+..      |            -++.+.|..+|+++.+.... ..+
T Consensus       148 r~~f---qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~  224 (366)
T COG3490         148 REGF---QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLR  224 (366)
T ss_pred             cccc---ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhh
Confidence            8532   224445566666778999999998887642      1            13555666677766554422 124


Q ss_pred             CCceEEEEECCCCcEEEEec
Q 023822          251 RNSTLEASFSPEGMFVISGR  270 (276)
Q Consensus       251 ~~~v~~~~~s~~g~~l~~~~  270 (276)
                      ...|..++..+||+.++.+-
T Consensus       225 ~lSiRHld~g~dgtvwfgcQ  244 (366)
T COG3490         225 QLSIRHLDIGRDGTVWFGCQ  244 (366)
T ss_pred             hcceeeeeeCCCCcEEEEEE
Confidence            56788899999998776553

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.25  E-value=0.04  Score=39.86  Aligned_cols=180  Identities=16%  Similarity=0.153  Sum_probs=100.0

Q ss_pred             cCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEE-EeeCCCeEEEEeccCceeeeeEeecC-C
Q 023822           87 HPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFI-SGSLDRTVLLWDQRAEKCQGLLRVQG-R  164 (276)
Q Consensus        87 ~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~-~  164 (276)
                      ++..+.+.+.-+ ...|++||+.+++.+..-+-....+..=-...-++.+. -.=.+|.-..+|.++-+++..+.-.+ -
T Consensus        55 ~g~i~esTG~yg-~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG  133 (262)
T COG3823          55 DGHILESTGLYG-FSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG  133 (262)
T ss_pred             CCEEEEeccccc-cceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc
Confidence            444455544423 67899999999887665432212221111111223222 23347888899999888877763322 2


Q ss_pred             CeeEecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCC-CCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEE
Q 023822          165 PAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLST  243 (276)
Q Consensus       165 ~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  243 (276)
                      ..++.... .++.+.....++.-|.++............+. -..++.+.|- +|...|-.-.+..|...+..+|+.+..
T Consensus       134 WgLt~d~~-~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~w  211 (262)
T COG3823         134 WGLTSDDK-NLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAW  211 (262)
T ss_pred             eeeecCCc-ceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEE
Confidence            23333322 34444446778888887765433223332222 1233444543 566555555666777778888888776


Q ss_pred             eecCC---------CCCCceEEEEECCCC-cEEEEe
Q 023822          244 YNVKP---------VSRNSTLEASFSPEG-MFVISG  269 (276)
Q Consensus       244 ~~~~~---------~~~~~v~~~~~s~~g-~~l~~~  269 (276)
                      +....         .+..-.+.+++.|++ +++++|
T Consensus       212 idlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         212 IDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             EEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            65221         234567889999988 555555

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.13  E-value=0.061  Score=46.28  Aligned_cols=181  Identities=12%  Similarity=0.107  Sum_probs=96.5

Q ss_pred             CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeee-e--cccCcceEEEEeccC
Q 023822           56 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRY-F--KGHHDRVVSLSLCSS  132 (276)
Q Consensus        56 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~-~--~~~~~~i~~~~~~~~  132 (276)
                      ..|+||+. +|+.+..+.-...++-.+.|+.+...+++ ..   +|.+++|++........ .  ......|..+.+..+
T Consensus        64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~eeLI~v-~k---~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~  138 (829)
T KOG2280|consen   64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEELICV-QK---DGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHN  138 (829)
T ss_pred             eeEEEEec-cccchHHHHhcCCCeeeecccCCceEEEE-ec---cceEEEeecchhhhcccccccccccCceeEEEEecC
Confidence            45888886 57777776655668999999977665555 44   99999999854322110 1  222334555555555


Q ss_pred             CCEEEEeeCCCeEEEEeccCceeeeeE---eecCC--CeeEecCCCcEEEEee--C--CeEEEEecccCCCCCeeeeeec
Q 023822          133 KDCFISGSLDRTVLLWDQRAEKCQGLL---RVQGR--PAAAYDDQGLVFAVAF--G--GYIRMFDARKYEKGPFDIFSVG  203 (276)
Q Consensus       133 ~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~--~~~~~~~~~~~l~~~~--d--~~i~~~d~~~~~~~~~~~~~~~  203 (276)
                      |  ++.-..+|.+.+-+-........+   +....  .+-...+++......-  +  --..++-....   ......+.
T Consensus       139 G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~---~~q~~~~~  213 (829)
T KOG2280|consen  139 G--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEES---RVQLHALS  213 (829)
T ss_pred             c--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecc---cccccccC
Confidence            5  344444555544322111111111   11111  1222222221111111  1  00111111111   11122233


Q ss_pred             CCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeec
Q 023822          204 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV  246 (276)
Q Consensus       204 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  246 (276)
                      .....+..+..||+.++|+-=..+|.|.+-+....+.+..+..
T Consensus       214 ~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~  256 (829)
T KOG2280|consen  214 WPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNC  256 (829)
T ss_pred             CCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCC
Confidence            3345678899999999999999999999998887777766653

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.12  E-value=0.18  Score=44.95  Aligned_cols=149  Identities=15%  Similarity=0.182  Sum_probs=97.0

Q ss_pred             EEEEEEcCC-CCEEEEee----------cCCeEEEEEccCCeeeeeeeeee--eceEEEEEeccCCeEEEeccCCCCCce
Q 023822           37 ISSMDFHKS-SSYLVTAS----------DDESIRLYDVTAATCLKTINSKK--YGVDLVCFTSHPTTVIYSSKNGWDESL  103 (276)
Q Consensus        37 v~~~~~~~~-~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~~~~d~~i  103 (276)
                      |.++.|..| +.++++|.          ..|.|.++.....+.+.....+.  +.+.++..- +++.++.-     +..|
T Consensus       777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA~I-----n~~v  850 (1096)
T KOG1897|consen  777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLAGI-----NQSV  850 (1096)
T ss_pred             eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEEec-----CcEE
Confidence            445557776 66777775          24778888877644444433332  233333321 55555443     7799


Q ss_pred             EEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCce--eeeeE---eecCCCeeEecCCCcEEEE
Q 023822          104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK--CQGLL---RVQGRPAAAYDDQGLVFAV  178 (276)
Q Consensus       104 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~---~~~~~~~~~~~~~~~~l~~  178 (276)
                      ++|++.+.+.++.-..+..++..+...-.++.++.|..-+++.+.-.+..+  ....-   +......+.+-.+..++.+
T Consensus       851 rLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylga  930 (1096)
T KOG1897|consen  851 RLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGA  930 (1096)
T ss_pred             EEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEee
Confidence            999999988777777788899999999899999999988887766555443  22222   3344455666666666666


Q ss_pred             eeCCeEEEEeccc
Q 023822          179 AFGGYIRMFDARK  191 (276)
Q Consensus       179 ~~d~~i~~~d~~~  191 (276)
                      -.+|.+.+....+
T Consensus       931 e~~gNlf~v~~d~  943 (1096)
T KOG1897|consen  931 ENSGNLFTVRKDS  943 (1096)
T ss_pred             cccccEEEEEecC
Confidence            6678777765543

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.09  E-value=0.1  Score=41.70  Aligned_cols=237  Identities=15%  Similarity=0.148  Sum_probs=118.6

Q ss_pred             cEEEEEEcCCCCEEEEeecCCeEEEEEccCCee---eeee----eeeeeceEEEEEecc---CCeEEEeccC----C--C
Q 023822           36 RISSMDFHKSSSYLVTASDDESIRLYDVTAATC---LKTI----NSKKYGVDLVCFTSH---PTTVIYSSKN----G--W   99 (276)
Q Consensus        36 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~----~~~~~~v~~~~~~~~---~~~l~~~~~~----~--~   99 (276)
                      .-+.|+|.|||++|++ ...|.|++++ ..+..   +..+    .........++++|+   +.+|.+....    .  .
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            3578999999877665 5699999999 44443   2222    123456789999994   3444443320    0  0


Q ss_pred             CCceEEEEccCC-------cee-eeecc---cCcceEEEEeccCCCEEEEeeCC-------------CeEEEEeccCcee
Q 023822          100 DESLRLLSLHDN-------KYL-RYFKG---HHDRVVSLSLCSSKDCFISGSLD-------------RTVLLWDQRAEKC  155 (276)
Q Consensus       100 d~~i~~~d~~~~-------~~~-~~~~~---~~~~i~~~~~~~~~~~l~~~~~d-------------~~i~iwd~~~~~~  155 (276)
                      ...|.-|....+       +.+ ..+..   ....-..|.|.||+.++++.+..             |.|.-.+....-.
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p  160 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP  160 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence            124444544433       111 11111   12234679999999866665543             2333333221100


Q ss_pred             -----------eeeE---eecCCCeeEecCC-CcEEEEee--CCeEEEEecccCCC----------C-------------
Q 023822          156 -----------QGLL---RVQGRPAAAYDDQ-GLVFAVAF--GGYIRMFDARKYEK----------G-------------  195 (276)
Q Consensus       156 -----------~~~~---~~~~~~~~~~~~~-~~~l~~~~--d~~i~~~d~~~~~~----------~-------------  195 (276)
                                 ...+   -......++|+|. +.++++-.  +..=.+.-++.+..          .             
T Consensus       161 ~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~  240 (331)
T PF07995_consen  161 ADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCP  240 (331)
T ss_dssp             TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-T
T ss_pred             CCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCC
Confidence                       0011   1111226889998 77776654  32222222222210          0             


Q ss_pred             --CeeeeeecCCCCCceEEEECC-------CCcEEEEeecCCcEEEEECCCCcEEEEe-ecCCCCCCceEEEEECCCCcE
Q 023822          196 --PFDIFSVGGDISDANVVKFSN-------DGRLMLLTTMEGHIHVLDSFRGTLLSTY-NVKPVSRNSTLEASFSPEGMF  265 (276)
Q Consensus       196 --~~~~~~~~~~~~~i~~~~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~v~~~~~s~~g~~  265 (276)
                        ......+..| ..+..+.|..       .|.++++.-..+.|....+..+..+... .........+.++++.|||.+
T Consensus       241 ~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~L  319 (331)
T PF07995_consen  241 GFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGAL  319 (331)
T ss_dssp             TS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEE
T ss_pred             CcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeE
Confidence              0011222222 4455666653       3456666555677888887655433222 211234458999999999999


Q ss_pred             EEEecCCCCC
Q 023822          266 VISGRVSPFS  275 (276)
Q Consensus       266 l~~~~~dg~v  275 (276)
                      +++.+.+|.+
T Consensus       320 yv~~d~~G~i  329 (331)
T PF07995_consen  320 YVSDDSDGKI  329 (331)
T ss_dssp             EEEE-TTTTE
T ss_pred             EEEECCCCeE
Confidence            9988877754

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=97.07  E-value=0.022  Score=46.75  Aligned_cols=135  Identities=7%  Similarity=0.053  Sum_probs=88.4

Q ss_pred             CCCE-EEEeeCCCeEEEEeccCceeeeeEeecCCCeeEecCCC--------cEEEEeeCCeEEEEecccCCCCCeeeeee
Q 023822          132 SKDC-FISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQG--------LVFAVAFGGYIRMFDARKYEKGPFDIFSV  202 (276)
Q Consensus       132 ~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--------~~l~~~~d~~i~~~d~~~~~~~~~~~~~~  202 (276)
                      +.++ +..+.....++-.|++.++.+.....+.-..+.|.|..        .-|++-++..|.-.|.+.... .+.....
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gN-Ki~v~es  556 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGN-KIKVVES  556 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCccceEEeecccceEEecccccCC-ceeeeee
Confidence            4443 34555567788889999999988866665578888753        456666788888888876442 1112111


Q ss_pred             c--CCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecC
Q 023822          203 G--GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRV  271 (276)
Q Consensus       203 ~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  271 (276)
                      .  .......+..-.. ..|+|+++..|-|++||--.-.....+.   +....|..+..+.+|+++++.+.
T Consensus       557 KdY~tKn~Fss~~tTe-sGyIa~as~kGDirLyDRig~rAKtalP---~lG~aIk~idvta~Gk~ilaTCk  623 (776)
T COG5167         557 KDYKTKNKFSSGMTTE-SGYIAAASRKGDIRLYDRIGKRAKTALP---GLGDAIKHIDVTANGKHILATCK  623 (776)
T ss_pred             hhcccccccccccccc-CceEEEecCCCceeeehhhcchhhhcCc---ccccceeeeEeecCCcEEEEeec
Confidence            1  1112233333333 3589999999999999954333333344   67788999999999998776554

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=97.00  E-value=0.069  Score=45.90  Aligned_cols=110  Identities=13%  Similarity=0.111  Sum_probs=72.8

Q ss_pred             ceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeec-ccCcceEEEEec--cCCCEEEEeeCCCeEEEEecc---
Q 023822           78 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFK-GHHDRVVSLSLC--SSKDCFISGSLDRTVLLWDQR---  151 (276)
Q Consensus        78 ~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~i~~~~~~--~~~~~l~~~~~d~~i~iwd~~---  151 (276)
                      ...-+.-+.-++..++-..   ...+.|||.+.+.....-. ...+.|.++.|.  |+++.+++.+..+.|.+|--.   
T Consensus        31 ~~~li~gss~~k~a~V~~~---~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d  107 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSS---RSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD  107 (631)
T ss_pred             CcceEeecccCcEEEEECC---CCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence            3444555554554444443   6789999998876433221 357789999996  688888888889999988532   


Q ss_pred             ------CceeeeeE-----eecCCCeeEecCCCcEEEEeeCCeEEEEeccc
Q 023822          152 ------AEKCQGLL-----RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK  191 (276)
Q Consensus       152 ------~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~  191 (276)
                            +...++.+     ..+++....|.++|.+++++ ++++.++|-.-
T Consensus       108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk~~  157 (631)
T PF12234_consen  108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDKWL  157 (631)
T ss_pred             hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe-CCEEEEECCCc
Confidence                  11223333     34567788999998876655 57788887543

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.99  E-value=0.077  Score=38.46  Aligned_cols=174  Identities=11%  Similarity=-0.002  Sum_probs=88.7

Q ss_pred             CCCEEEEeecC--CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCc
Q 023822           45 SSSYLVTASDD--ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHD  122 (276)
Q Consensus        45 ~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~  122 (276)
                      +|.++.+.+.-  ..|++||+.+++.+....-....+..=-...-+.++..-.-.  ++.-..+|.++-+.+..+. .++
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~--egvaf~~d~~t~~~lg~~~-y~G  131 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWK--EGVAFKYDADTLEELGRFS-YEG  131 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEec--cceeEEEChHHhhhhcccc-cCC
Confidence            45566666543  479999999998876654332122211111123333332221  8888899998887766654 334


Q ss_pred             ceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCC-----CeeEecCCCcEEEEee-CCeEEEEecccCCC
Q 023822          123 RVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGR-----PAAAYDDQGLVFAVAF-GGYIRMFDARKYEK  194 (276)
Q Consensus       123 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~-----~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~  194 (276)
                      .=+.++-  |+..|+.++...+++.-|.++......+  ...++     +.+.|- +|.+++--. +..|...|..+++.
T Consensus       132 eGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV  208 (262)
T COG3823         132 EGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRV  208 (262)
T ss_pred             cceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcE
Confidence            4455543  5555666665667777776655444333  11111     122221 333333322 33444444444331


Q ss_pred             C--------CeeeeeecCCCCCceEEEECCCC-cEEEEe
Q 023822          195 G--------PFDIFSVGGDISDANVVKFSNDG-RLMLLT  224 (276)
Q Consensus       195 ~--------~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~  224 (276)
                      .        .........+..-.+.+++.|++ +++++|
T Consensus       209 ~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         209 VAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             EEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            0        00011112234467789999987 555555

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.87  E-value=0.03  Score=50.30  Aligned_cols=141  Identities=11%  Similarity=0.051  Sum_probs=89.8

Q ss_pred             ceEEEEeccCCCEEE--EeeCCCeEEEEeccCceeee-----eE--------eecCCCeeEecCCC--cEEEEeeCCeEE
Q 023822          123 RVVSLSLCSSKDCFI--SGSLDRTVLLWDQRAEKCQG-----LL--------RVQGRPAAAYDDQG--LVFAVAFGGYIR  185 (276)
Q Consensus       123 ~i~~~~~~~~~~~l~--~~~~d~~i~iwd~~~~~~~~-----~~--------~~~~~~~~~~~~~~--~~l~~~~d~~i~  185 (276)
                      ++..+...+|+...+  ..+.+-.|..||+++-....     .+        ...-..++.|+|.-  ..++...|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            455566666765433  33334478999988543211     11        11223467787754  445555589998


Q ss_pred             EEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCC-CCceEEEEECCCCc
Q 023822          186 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS-RNSTLEASFSPEGM  264 (276)
Q Consensus       186 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~  264 (276)
                      +..+.....    ......-....++++|+|.|+.++.|-..|++.-|.. .++....+...+.. ...|.+|+|-..-.
T Consensus       182 V~~~~~~~~----~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~e  256 (1405)
T KOG3630|consen  182 VKSTKQLAQ----NVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQE  256 (1405)
T ss_pred             hhhhhhhhh----hhcccCcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEeccee
Confidence            887765332    1111123346889999999999999999999999874 55655555543333 37899999988877


Q ss_pred             EEEE
Q 023822          265 FVIS  268 (276)
Q Consensus       265 ~l~~  268 (276)
                      +|++
T Consensus       257 flvv  260 (1405)
T KOG3630|consen  257 FLVV  260 (1405)
T ss_pred             EEEE
Confidence            7765

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.80  E-value=0.15  Score=39.02  Aligned_cols=148  Identities=16%  Similarity=0.101  Sum_probs=89.8

Q ss_pred             ceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEe-ccCceee
Q 023822           78 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD-QRAEKCQ  156 (276)
Q Consensus        78 ~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd-~~~~~~~  156 (276)
                      .+...+++++++.++..........+.++..  +....... ....+....|++++...+....+...+++. ...+...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            6889999999998877762111445555543  33333322 223678889999987666666566666663 2332222


Q ss_pred             e-eE---eec-CCCeeEecCCCcEEEEee----CCeEEEEecccCCCC-Ceee----eeecCCCCCceEEEECCCCcEEE
Q 023822          157 G-LL---RVQ-GRPAAAYDDQGLVFAVAF----GGYIRMFDARKYEKG-PFDI----FSVGGDISDANVVKFSNDGRLML  222 (276)
Q Consensus       157 ~-~~---~~~-~~~~~~~~~~~~~l~~~~----d~~i~~~d~~~~~~~-~~~~----~~~~~~~~~i~~~~~~~~~~~l~  222 (276)
                      . ..   ... .+..+.++|||.-++.-.    ++.|.+--+...... +...    .........+..+.|.+++.+++
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V  181 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV  181 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence            1 12   122 678999999997666555    688888876543332 1111    11112345789999999998777


Q ss_pred             EeecCC
Q 023822          223 LTTMEG  228 (276)
Q Consensus       223 ~~~~dg  228 (276)
                      .+...+
T Consensus       182 ~~~~~~  187 (253)
T PF10647_consen  182 LGRSAG  187 (253)
T ss_pred             EeCCCC
Confidence            765443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.79  E-value=0.22  Score=40.63  Aligned_cols=186  Identities=12%  Similarity=0.079  Sum_probs=92.0

Q ss_pred             EEEcCCCCEEEEee--c----CCeEEEEEccCCeeeeeeeeee---eceEEEEEeccCCeEEEeccC-------------
Q 023822           40 MDFHKSSSYLVTAS--D----DESIRLYDVTAATCLKTINSKK---YGVDLVCFTSHPTTVIYSSKN-------------   97 (276)
Q Consensus        40 ~~~~~~~~~l~~~~--~----d~~i~iwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~~-------------   97 (276)
                      +..-|+|+.++++-  .    -|-+.+.|-++.+.........   .--....|.|..+.++++.-.             
T Consensus       135 ~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d  214 (461)
T PF05694_consen  135 VHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPED  214 (461)
T ss_dssp             EEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTT
T ss_pred             eeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhH
Confidence            34456888777652  2    2467888887777776665432   234677888888888776432             


Q ss_pred             ----CCCCceEEEEccCCceeeeecccC--cceEEEEecc--CCCE-EEEeeCCCeEEEEec-cCcee----eeeEe---
Q 023822           98 ----GWDESLRLLSLHDNKYLRYFKGHH--DRVVSLSLCS--SKDC-FISGSLDRTVLLWDQ-RAEKC----QGLLR---  160 (276)
Q Consensus        98 ----~~d~~i~~~d~~~~~~~~~~~~~~--~~i~~~~~~~--~~~~-l~~~~~d~~i~iwd~-~~~~~----~~~~~---  160 (276)
                          .+..++.+||+.+.+.++++.--.  .....+.|..  +..+ |+.+-...+|..|-- +.++-    +..+.   
T Consensus       215 ~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~  294 (461)
T PF05694_consen  215 LEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKK  294 (461)
T ss_dssp             HHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE
T ss_pred             hhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcc
Confidence                126789999999999999886432  2355677754  3443 444444556655543 33321    11111   


Q ss_pred             ----------------ecCCCeeEecCCCcEEEEee--CCeEEEEecccCCCCCeeee-eecC--------------CCC
Q 023822          161 ----------------VQGRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDIF-SVGG--------------DIS  207 (276)
Q Consensus       161 ----------------~~~~~~~~~~~~~~~l~~~~--d~~i~~~d~~~~~~~~~~~~-~~~~--------------~~~  207 (276)
                                      ..-+..+.++.|.++|.++.  .|.|+.||+.....+.+.-. .+.+              -.+
T Consensus       295 v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~G  374 (461)
T PF05694_consen  295 VEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRG  374 (461)
T ss_dssp             --SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S
T ss_pred             cCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCC
Confidence                            11245788999999999888  89999999988665332211 1111              112


Q ss_pred             CceEEEECCCCcEEEEee
Q 023822          208 DANVVKFSNDGRLMLLTT  225 (276)
Q Consensus       208 ~i~~~~~~~~~~~l~~~~  225 (276)
                      ...-+..|-||+.|+..+
T Consensus       375 gPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  375 GPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             ----EEE-TTSSEEEEE-
T ss_pred             CCCeEEEccCCeEEEEEe
Confidence            346688999998887764

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.79  E-value=0.22  Score=40.56  Aligned_cols=140  Identities=14%  Similarity=0.105  Sum_probs=77.8

Q ss_pred             CcEEEEEEcCCCCEEEEee-----------cCC-eEEEEEccC--Ce--eeeeeeeeeeceEEEEEeccCCeEEEeccCC
Q 023822           35 GRISSMDFHKSSSYLVTAS-----------DDE-SIRLYDVTA--AT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNG   98 (276)
Q Consensus        35 ~~v~~~~~~~~~~~l~~~~-----------~d~-~i~iwd~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~   98 (276)
                      .....|+|.++|+++++-.           ..+ .|.+++-.+  |+  ....+...-.....+++.+++  ++++..  
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~--   89 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATP--   89 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCC--
Confidence            3456799999999777643           223 677776432  32  223333223346788998888  444443  


Q ss_pred             CCCceEEE-EccCC-----ce--e-eeecc----cCcceEEEEeccCCCEEEEeeCC-------------------CeEE
Q 023822           99 WDESLRLL-SLHDN-----KY--L-RYFKG----HHDRVVSLSLCSSKDCFISGSLD-------------------RTVL  146 (276)
Q Consensus        99 ~d~~i~~~-d~~~~-----~~--~-~~~~~----~~~~i~~~~~~~~~~~l~~~~~d-------------------~~i~  146 (276)
                       . .|..+ |....     +.  + ..+..    +......++|.|||.+.++-+..                   |.|.
T Consensus        90 -~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~  167 (367)
T TIGR02604        90 -P-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLF  167 (367)
T ss_pred             -C-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEE
Confidence             3 44444 44321     11  1 11221    12346789999999866654421                   4455


Q ss_pred             EEeccCceeeeeE-eecCCCeeEecCCCcEEEEee
Q 023822          147 LWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF  180 (276)
Q Consensus       147 iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~  180 (276)
                      -+|....+....- .......++|++++.++++-.
T Consensus       168 r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       168 RYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             EEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence            6665554432211 222245799999998887655

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PHA03098 kelch-like protein; Provisional

Probab=96.76  E-value=0.16  Score=43.62  Aligned_cols=145  Identities=10%  Similarity=0.085  Sum_probs=68.5

Q ss_pred             CCCEEEEeecC-----CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCC---CceEEEEccCCceee-
Q 023822           45 SSSYLVTASDD-----ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD---ESLRLLSLHDNKYLR-  115 (276)
Q Consensus        45 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d---~~i~~~d~~~~~~~~-  115 (276)
                      ++...+.|+.+     ..+..||..+.+....-..............+++..+.|+....+   ..+..||+.+++-.. 
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~  421 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG  421 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence            56677777765     346778877654322111111111111122356666666632111   468889987654322 


Q ss_pred             -eecccCcceEEEEeccCCCEEEEeeCC--------CeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-C--
Q 023822          116 -YFKGHHDRVVSLSLCSSKDCFISGSLD--------RTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-G--  181 (276)
Q Consensus       116 -~~~~~~~~i~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d--  181 (276)
                       .+...... .++ ...++..++.|+.+        ..+.+||..+.+-...-  ...........-++++++.|. +  
T Consensus       422 ~~~p~~r~~-~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~  499 (534)
T PHA03098        422 SPLPISHYG-GCA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYE  499 (534)
T ss_pred             CCCCccccC-ceE-EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEcCCcCC
Confidence             11111111 122 22356667777643        23888998876543221  111111111122566666554 2  


Q ss_pred             ---CeEEEEeccc
Q 023822          182 ---GYIRMFDARK  191 (276)
Q Consensus       182 ---~~i~~~d~~~  191 (276)
                         +.+.+||..+
T Consensus       500 ~~~~~v~~yd~~~  512 (534)
T PHA03098        500 YYINEIEVYDDKT  512 (534)
T ss_pred             cccceeEEEeCCC
Confidence               3677777765

>PRK13684 Ycf48-like protein; Provisional

Probab=96.75  E-value=0.21  Score=40.00  Aligned_cols=146  Identities=13%  Similarity=0.108  Sum_probs=80.9

Q ss_pred             CcceEEEEeccCCCEEEEeeCCCeEEE-EeccCceeeeeE---eecCCCeeEecCCCcEEEEeeCCeEEEEecccCCCCC
Q 023822          121 HDRVVSLSLCSSKDCFISGSLDRTVLL-WDQRAEKCQGLL---RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGP  196 (276)
Q Consensus       121 ~~~i~~~~~~~~~~~l~~~~~d~~i~i-wd~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~  196 (276)
                      ...+..+.+.|++.+++++. .|.+.. +|- .++.-...   ....+..+.+.+++.+++++..|.+++=....+..-.
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~  249 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWS  249 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccc
Confidence            45688899999886665554 555443 221 11211112   3345667889999998888888876542233322211


Q ss_pred             eeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEec
Q 023822          197 FDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGR  270 (276)
Q Consensus       197 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  270 (276)
                      ............+..+.+.|++..++ ++.+|.+. .....++.-.............+.+.|..+++.+++|.
T Consensus       250 ~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  321 (334)
T PRK13684        250 KPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQ  321 (334)
T ss_pred             cccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECC
Confidence            00100011223577889999887555 44667554 34455555444331112334678888887777766553

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.66  E-value=3.4e-05  Score=61.89  Aligned_cols=143  Identities=8%  Similarity=0.079  Sum_probs=95.5

Q ss_pred             CcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCcee
Q 023822           35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL  114 (276)
Q Consensus        35 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~  114 (276)
                      ..-....|-|++.-++.++.+..+..||- .++...... ..+....++|..++..+++....  .+.+.+||+.+....
T Consensus        35 v~pi~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek--~~piylwd~n~eytq  110 (615)
T KOG2247|consen   35 VGPIIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEK--TGPIYLWDVNSEYTQ  110 (615)
T ss_pred             cccceeeEecCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhc--CCCeeechhhhhhHH
Confidence            33445678887777998889989999984 344433332 34456778888888877776653  899999999875432


Q ss_pred             eeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEeeC
Q 023822          115 RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAFG  181 (276)
Q Consensus       115 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~d  181 (276)
                      +.-.+-...-.-+.|++....++.+...|.+.+++..+.+.+...  +...+.++++.+.+..+..+.|
T Consensus       111 qLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd  179 (615)
T KOG2247|consen  111 QLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCD  179 (615)
T ss_pred             HHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcH
Confidence            211111111122678888888888888999999998876655444  4555667777777665555443

>PRK13684 Ycf48-like protein; Provisional

Probab=96.55  E-value=0.3  Score=39.15  Aligned_cols=148  Identities=10%  Similarity=0.097  Sum_probs=85.1

Q ss_pred             CCcEEEEEEcCCCCEEEEeecCCeEEE-EEccCCeeeeee-eeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCC
Q 023822           34 NGRISSMDFHKSSSYLVTASDDESIRL-YDVTAATCLKTI-NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN  111 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~~~~~d~~i~i-wd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~  111 (276)
                      .+.+.++.+.|++.+++++ ..|.+.. ++ ..++..... ......+..+.+.++++.++++.    .|.+.+=..+.+
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~----~G~~~~~s~d~G  245 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR----GGQIRFNDPDDL  245 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEec----CCEEEEccCCCC
Confidence            3568889999988776665 4465543 22 222222222 23345788999999988777664    666543233333


Q ss_pred             ceeeeecc----cCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEee-----cCCCeeEecCCCcEEEEeeCC
Q 023822          112 KYLRYFKG----HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV-----QGRPAAAYDDQGLVFAVAFGG  182 (276)
Q Consensus       112 ~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~d~  182 (276)
                      ..-.....    ....+..+.+.+++..++ ++.+|.+.. ....++.-.....     .....+.+..+++.++++..|
T Consensus       246 ~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G  323 (334)
T PRK13684        246 ESWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRG  323 (334)
T ss_pred             CccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCc
Confidence            32221111    123477888998777555 455675543 3343333222211     123456777788888998889


Q ss_pred             eEEEEec
Q 023822          183 YIRMFDA  189 (276)
Q Consensus       183 ~i~~~d~  189 (276)
                      .|..|+-
T Consensus       324 ~il~~~~  330 (334)
T PRK13684        324 VLLRYVG  330 (334)
T ss_pred             eEEEecC
Confidence            8887764

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.51  E-value=0.13  Score=43.20  Aligned_cols=140  Identities=7%  Similarity=0.020  Sum_probs=82.0

Q ss_pred             cceEEEEeccCCCEE-EEee--CCCeEEEEeccCceeeeeEeecCCCeeEecCCC-----cEEEEeeCCeEEEEecccCC
Q 023822          122 DRVVSLSLCSSKDCF-ISGS--LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQG-----LVFAVAFGGYIRMFDARKYE  193 (276)
Q Consensus       122 ~~i~~~~~~~~~~~l-~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~~d~~i~~~d~~~~~  193 (276)
                      -++..++|. ||+.+ ++.-  .+|.+++=|-   +.+.  +...+..+.|.|-+     .+||+-....|.+|.+....
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~viG--qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~   93 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVIG--QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPST   93 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCCc---cEee--ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCc
Confidence            357888996 55543 3332  2333333221   1122  33456678888753     68888889999999986322


Q ss_pred             --CCCeeeeeecCC--CCC--ceEEEECCCCcEEEEeecCCcEEEEECCC--CcEEEEeecCCCCCCceEEEEECCCCcE
Q 023822          194 --KGPFDIFSVGGD--ISD--ANVVKFSNDGRLMLLTTMEGHIHVLDSFR--GTLLSTYNVKPVSRNSTLEASFSPEGMF  265 (276)
Q Consensus       194 --~~~~~~~~~~~~--~~~--i~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~v~~~~~s~~g~~  265 (276)
                        .........-..  .-+  ...+.|+|....|++-.....=.++++..  ......+.    ..+-|.+.+|.+||++
T Consensus        94 ~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~----~~G~IhCACWT~DG~R  169 (671)
T PF15390_consen   94 TERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK----TSGLIHCACWTKDGQR  169 (671)
T ss_pred             cccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc----CCceEEEEEecCcCCE
Confidence              111111111111  111  24588999988887765544434555543  33333443    6789999999999998


Q ss_pred             EEEecC
Q 023822          266 VISGRV  271 (276)
Q Consensus       266 l~~~~~  271 (276)
                      |+++-.
T Consensus       170 LVVAvG  175 (671)
T PF15390_consen  170 LVVAVG  175 (671)
T ss_pred             EEEEeC
Confidence            877643

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.47  E-value=0.17  Score=43.62  Aligned_cols=103  Identities=9%  Similarity=0.114  Sum_probs=68.4

Q ss_pred             eeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEEC--CCCcEEEEeecCCcEEEEECC------
Q 023822          166 AAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFS--NDGRLMLLTTMEGHIHVLDSF------  236 (276)
Q Consensus       166 ~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~i~i~d~~------  236 (276)
                      .+.-+.-+++.++.. ...+.+||.+....   ...........|..+.|.  |+|+.+++.+....|.+|--.      
T Consensus        34 li~gss~~k~a~V~~~~~~LtIWD~~~~~l---E~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~  110 (631)
T PF12234_consen   34 LISGSSIKKIAVVDSSRSELTIWDTRSGVL---EYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN  110 (631)
T ss_pred             eEeecccCcEEEEECCCCEEEEEEcCCcEE---EEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence            444455666666655 57899999987552   122222445688888876  688989888899999998531      


Q ss_pred             ---CCcEEEEeecCCCCCCceEEEEECCCCcEEEEecC
Q 023822          237 ---RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRV  271 (276)
Q Consensus       237 ---~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  271 (276)
                         +...+..+....-...+|.+..|.++|.+++.++.
T Consensus       111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN  148 (631)
T PF12234_consen  111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN  148 (631)
T ss_pred             CCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC
Confidence               22344444433223468999999999987766553

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.37  E-value=0.66  Score=41.15  Aligned_cols=94  Identities=7%  Similarity=0.037  Sum_probs=54.1

Q ss_pred             CCcEEEEEEcCCCCEEEEeecCCeEEEEEccC-CeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCc
Q 023822           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTA-ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK  112 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~  112 (276)
                      .-.|..+.+||+|.+||..|..| |.|-.+.. ......+......+.|-.+.-+..++                     
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~---------------------  141 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFF---------------------  141 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhc---------------------
Confidence            34688899999999999888765 55544432 11111222222223332222111111                     


Q ss_pred             eeeeecccCcceEEEEeccC---CCEEEEeeCCCeEEEEeccCc
Q 023822          113 YLRYFKGHHDRVVSLSLCSS---KDCFISGSLDRTVLLWDQRAE  153 (276)
Q Consensus       113 ~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~  153 (276)
                          ...+...|..+.|+|.   +..|+.-..|+++++||+...
T Consensus       142 ----~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  142 ----TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             ----cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence                1123456777888885   467888888889999988654

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=96.37  E-value=0.26  Score=37.19  Aligned_cols=142  Identities=12%  Similarity=0.079  Sum_probs=79.2

Q ss_pred             eEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeC-C--CeEEEEeccCc----eeee---eE-eecCCCeeEecC
Q 023822          103 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-D--RTVLLWDQRAE----KCQG---LL-RVQGRPAAAYDD  171 (276)
Q Consensus       103 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d--~~i~iwd~~~~----~~~~---~~-~~~~~~~~~~~~  171 (276)
                      -.+||+.+++....-........+-.+.+||+++.+|+. +  ..+++++....    ....   .+ ...-.+....-+
T Consensus        48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~  127 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP  127 (243)
T ss_pred             EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence            457888887643322222333344457789999998876 2  35788875441    1000   11 111233566678


Q ss_pred             CCcEEEEee--CCeEEEEecccCCCCCeeeeeec-----CCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEe
Q 023822          172 QGLVFAVAF--GGYIRMFDARKYEKGPFDIFSVG-----GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY  244 (276)
Q Consensus       172 ~~~~l~~~~--d~~i~~~d~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  244 (276)
                      +|++++.|.  .....+|..+...........+.     ....---.+...|+|++++.+..+.  .|||..+.+.++.+
T Consensus       128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~l  205 (243)
T PF07250_consen  128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTL  205 (243)
T ss_pred             CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeC
Confidence            898888887  34455665433221111111111     1111223567789999998887654  57798888777766


Q ss_pred             ec
Q 023822          245 NV  246 (276)
Q Consensus       245 ~~  246 (276)
                      ..
T Consensus       206 P~  207 (243)
T PF07250_consen  206 PD  207 (243)
T ss_pred             CC
Confidence            53

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=96.29  E-value=0.098  Score=43.21  Aligned_cols=143  Identities=10%  Similarity=0.123  Sum_probs=90.8

Q ss_pred             cCCCCEEE-EeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCC-------eEEEeccCCCCCceEEEEccCCc-e
Q 023822           43 HKSSSYLV-TASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT-------TVIYSSKNGWDESLRLLSLHDNK-Y  113 (276)
Q Consensus        43 ~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~~~~d~~i~~~d~~~~~-~  113 (276)
                      ..+.++|+ .|+....++-.|++.|+.+..+..+..-  .+.|.|..+       .-++|-+   +..|.-.|.+-.. .
T Consensus       476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS---~~svFrIDPR~~gNK  550 (776)
T COG5167         476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLS---DYSVFRIDPRARGNK  550 (776)
T ss_pred             cCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeec---ccceEEecccccCCc
Confidence            33445544 4555667888899999999988877643  567777542       2233443   6667666765332 1


Q ss_pred             eeeecccCcceEEEEec----cCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEeeCCeEEEE
Q 023822          114 LRYFKGHHDRVVSLSLC----SSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAFGGYIRMF  187 (276)
Q Consensus       114 ~~~~~~~~~~i~~~~~~----~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~d~~i~~~  187 (276)
                      +... ......+.-.|+    ..+.+++.++..|-|++||--..+....+  -+..+..+..+.+|+++.+.+...+.+-
T Consensus       551 i~v~-esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~  629 (776)
T COG5167         551 IKVV-ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLT  629 (776)
T ss_pred             eeee-eehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEE
Confidence            1111 111222222222    24458999999999999995443333333  3455778889999999999999999999


Q ss_pred             eccc
Q 023822          188 DARK  191 (276)
Q Consensus       188 d~~~  191 (276)
                      |++-
T Consensus       630 d~~i  633 (776)
T COG5167         630 DVPI  633 (776)
T ss_pred             eccc
Confidence            9764

>PHA02790 Kelch-like protein; Provisional

Probab=96.21  E-value=0.37  Score=40.80  Aligned_cols=107  Identities=9%  Similarity=0.057  Sum_probs=52.4

Q ss_pred             CCCEEEEeecC--CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceee--eeccc
Q 023822           45 SSSYLVTASDD--ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR--YFKGH  120 (276)
Q Consensus        45 ~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~--~~~~~  120 (276)
                      ++...+.|+.+  ..+..||..+++....-.............-+++..+.|+..+....+..||..+++-..  .+...
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~  397 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP  397 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc
Confidence            56666777754  357778876543322111111111112223366666777653223457788887654322  11111


Q ss_pred             CcceEEEEeccCCCEEEEeeCCCeEEEEeccCceee
Q 023822          121 HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ  156 (276)
Q Consensus       121 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  156 (276)
                      .... ++ ..-+++..+.|+   .+.+||.++.+-.
T Consensus       398 r~~~-~~-~~~~~~IYv~GG---~~e~ydp~~~~W~  428 (480)
T PHA02790        398 HYKS-CA-LVFGRRLFLVGR---NAEFYCESSNTWT  428 (480)
T ss_pred             cccc-eE-EEECCEEEEECC---ceEEecCCCCcEe
Confidence            1111 22 123566666663   5678888766443

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.19  E-value=0.033  Score=29.06  Aligned_cols=30  Identities=17%  Similarity=0.151  Sum_probs=23.3

Q ss_pred             ceEEEEeccCC---CEEEEeeCCCeEEEEeccC
Q 023822          123 RVVSLSLCSSK---DCFISGSLDRTVLLWDQRA  152 (276)
Q Consensus       123 ~i~~~~~~~~~---~~l~~~~~d~~i~iwd~~~  152 (276)
                      .+.++.|+|++   .+|+.+-.-+.|.++|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            57888898744   4777777778899999885

It contains a characteristic DLL sequence motif.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.15  E-value=0.085  Score=47.63  Aligned_cols=145  Identities=9%  Similarity=0.012  Sum_probs=89.3

Q ss_pred             eceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceee-----eec------ccCcceEEEEeccCCC-EEEEeeCCCe
Q 023822           77 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR-----YFK------GHHDRVVSLSLCSSKD-CFISGSLDRT  144 (276)
Q Consensus        77 ~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~-----~~~------~~~~~i~~~~~~~~~~-~l~~~~~d~~  144 (276)
                      -++..+...+|....++..... +-.|..||+++-..-.     -+.      .......++.|+|.-. ..+.+..|+.
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsn-g~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls  179 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSN-GEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS  179 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecC-CceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence            3566667777877666655422 5688999987542211     111      1223456788888543 4677778999


Q ss_pred             EEEEeccCceee-eeE-eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEE
Q 023822          145 VLLWDQRAEKCQ-GLL-RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLM  221 (276)
Q Consensus       145 i~iwd~~~~~~~-~~~-~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  221 (276)
                      |++.-+...... ..+ -.....+++|+|.|+-++++. .|++.-|...-.....+..-... ....|.++.|-....++
T Consensus       180 l~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~-e~yrvl~v~Wl~t~efl  258 (1405)
T KOG3630|consen  180 LRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVE-ENYRVLSVTWLSTQEFL  258 (1405)
T ss_pred             hhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcC-CCcceeEEEEecceeEE
Confidence            988876543222 222 334467999999999999998 79999887654211111111111 14678899998776666


Q ss_pred             EE
Q 023822          222 LL  223 (276)
Q Consensus       222 ~~  223 (276)
                      ++
T Consensus       259 vv  260 (1405)
T KOG3630|consen  259 VV  260 (1405)
T ss_pred             EE
Confidence            55

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=96.11  E-value=0.35  Score=35.45  Aligned_cols=141  Identities=11%  Similarity=0.146  Sum_probs=78.5

Q ss_pred             CEEEEeecCCeEEEEEcc--CCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCC---ceEEE-EccCC----ceee-
Q 023822           47 SYLVTASDDESIRLYDVT--AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE---SLRLL-SLHDN----KYLR-  115 (276)
Q Consensus        47 ~~l~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~---~i~~~-d~~~~----~~~~-  115 (276)
                      ..|+.+...+.|.+|++.  ..+....+..- +.|..+.++..|+++++.-......   .+++| +.+..    .++. 
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            344444556789999988  33455555544 6899999999999999976543233   56666 22211    1221 


Q ss_pred             eecc---------------------cCcceEEEEeccCCCEEEEeeCCCeEEEEeccCcee-ee---eEee--------c
Q 023822          116 YFKG---------------------HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC-QG---LLRV--------Q  162 (276)
Q Consensus       116 ~~~~---------------------~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~---~~~~--------~  162 (276)
                      .+-+                     -..++.+++..|-..-|+.|+ ++++.+|.+..... ..   .+..        .
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~  186 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHID  186 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhheec
Confidence            1112                     123456777777433455555 46788988775543 11   1111        1


Q ss_pred             CCCeeEecCCCcEEEEeeCCeEEEEec
Q 023822          163 GRPAAAYDDQGLVFAVAFGGYIRMFDA  189 (276)
Q Consensus       163 ~~~~~~~~~~~~~l~~~~d~~i~~~d~  189 (276)
                      ...-....--+.++|..++..++++.+
T Consensus       187 ~~~p~~v~ic~~yiA~~s~~ev~Vlkl  213 (215)
T PF14761_consen  187 NFKPTQVAICEGYIAVMSDLEVLVLKL  213 (215)
T ss_pred             CceEEEEEEEeeEEEEecCCEEEEEEE
Confidence            111111112345677777777777654

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.04  E-value=0.55  Score=39.76  Aligned_cols=147  Identities=11%  Similarity=0.077  Sum_probs=85.6

Q ss_pred             CCcEEEEEEcCCCCEEE-Eee--cCCeEEEEEccCCeeeeeeeeeeeceEEEEEecc----CCeEEEeccCCCCCceEEE
Q 023822           34 NGRISSMDFHKSSSYLV-TAS--DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH----PTTVIYSSKNGWDESLRLL  106 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~-~~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~~~~d~~i~~~  106 (276)
                      -.+|..++|. ||+.++ +.-  .+|.+++=|   .+.+..    -..|..+.|.|-    ...+++...   ...|.+|
T Consensus        19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGq----FEhV~GlsW~P~~~~~~paLLAVQH---kkhVtVW   87 (671)
T PF15390_consen   19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQ----FEHVHGLSWAPPCTADTPALLAVQH---KKHVTVW   87 (671)
T ss_pred             hccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeec----cceeeeeeecCcccCCCCceEEEec---cceEEEE
Confidence            3578889997 565544 332  233333222   122322    335889999985    334445554   8999999


Q ss_pred             EccC-----Cceeeeecc-----cCcceEEEEeccCCCEEEEeeCCCeEEEEeccCce--eeeeE-eecCCCeeEecCCC
Q 023822          107 SLHD-----NKYLRYFKG-----HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK--CQGLL-RVQGRPAAAYDDQG  173 (276)
Q Consensus       107 d~~~-----~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~-~~~~~~~~~~~~~~  173 (276)
                      .+.-     ++.+.....     ..---..+.|+|....|+.-.....-.+++++...  ....+ ..+.+.|.+|..||
T Consensus        88 qL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG  167 (671)
T PF15390_consen   88 QLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDG  167 (671)
T ss_pred             EeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcC
Confidence            8752     222221111     11122457799999888777665555566665433  22333 33447799999999


Q ss_pred             cEEEEeeC--CeEEEEeccc
Q 023822          174 LVFAVAFG--GYIRMFDARK  191 (276)
Q Consensus       174 ~~l~~~~d--~~i~~~d~~~  191 (276)
                      +.|+++-+  =.-++||-..
T Consensus       168 ~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  168 QRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             CEEEEEeCCeEEEEEecCch
Confidence            77776664  4567787544

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.03  E-value=0.41  Score=35.56  Aligned_cols=92  Identities=7%  Similarity=0.039  Sum_probs=63.2

Q ss_pred             eEEEEEeccCCeEEEeccCCCCCceEEEE--ccCCc-----eeeeecc----cCcceEEEEeccCCCEEEEeeCCCeEEE
Q 023822           79 VDLVCFTSHPTTVIYSSKNGWDESLRLLS--LHDNK-----YLRYFKG----HHDRVVSLSLCSSKDCFISGSLDRTVLL  147 (276)
Q Consensus        79 v~~~~~~~~~~~l~~~~~~~~d~~i~~~d--~~~~~-----~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d~~i~i  147 (276)
                      -..++|..+.+.+......  +-.|.-||  ..++.     .+..++.    ..-..-.++...+|++++++-..++|..
T Consensus       160 sNgl~Wd~d~K~fY~iDsl--n~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~  237 (310)
T KOG4499|consen  160 SNGLAWDSDAKKFYYIDSL--NYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQK  237 (310)
T ss_pred             CccccccccCcEEEEEccC--ceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEE
Confidence            4578898888887776542  77787777  45543     2333322    1111234556678888888888999999


Q ss_pred             EeccCceeeeeE--eecCCCeeEecCC
Q 023822          148 WDQRAEKCQGLL--RVQGRPAAAYDDQ  172 (276)
Q Consensus       148 wd~~~~~~~~~~--~~~~~~~~~~~~~  172 (276)
                      .|..+++.+.++  ....+.+++|-..
T Consensus       238 ~dp~tGK~L~eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  238 VDPTTGKILLEIKLPTPQITSCCFGGK  264 (310)
T ss_pred             ECCCCCcEEEEEEcCCCceEEEEecCC
Confidence            999999999888  5556778888654

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.96  E-value=0.64  Score=41.23  Aligned_cols=35  Identities=9%  Similarity=0.113  Sum_probs=28.7

Q ss_pred             CCCCceEEEECCC---CcEEEEeecCCcEEEEECCCCc
Q 023822          205 DISDANVVKFSND---GRLMLLTTMEGHIHVLDSFRGT  239 (276)
Q Consensus       205 ~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~  239 (276)
                      ....|..+.|+|.   +..|++-..|+.+|+||+...+
T Consensus       145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence            3457888999996   4789999999999999997543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.91  E-value=0.22  Score=39.84  Aligned_cols=23  Identities=17%  Similarity=0.244  Sum_probs=14.3

Q ss_pred             CCceEEEEECCCCcEEEEecCCC
Q 023822          251 RNSTLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       251 ~~~v~~~~~s~~g~~l~~~~~dg  273 (276)
                      ...-..+.|.|||.+.++.+..+
T Consensus       113 ~H~g~~l~fgpDG~LYvs~G~~~  135 (331)
T PF07995_consen  113 NHNGGGLAFGPDGKLYVSVGDGG  135 (331)
T ss_dssp             SS-EEEEEE-TTSEEEEEEB-TT
T ss_pred             CCCCccccCCCCCcEEEEeCCCC
Confidence            34556799999997776666543

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.83  E-value=0.072  Score=39.70  Aligned_cols=63  Identities=8%  Similarity=0.111  Sum_probs=46.0

Q ss_pred             eccCCCEEEEeeCCCeEEEEeccCceeeeeE-------e---------ecCCCeeEecCCCcEEEEeeCCeEEEEeccc
Q 023822          129 LCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-------R---------VQGRPAAAYDDQGLVFAVAFGGYIRMFDARK  191 (276)
Q Consensus       129 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-------~---------~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~  191 (276)
                      +..+++++++.+.+|.+++||+.+++....-       .         ...+..+.++.+|.-++.-++|..+.|+..-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecccc
Confidence            3457888999999999999999988764332       1         1224456777788777777778888888654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.81  E-value=0.19  Score=41.19  Aligned_cols=94  Identities=13%  Similarity=0.171  Sum_probs=63.7

Q ss_pred             hccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeec-eEEEEEeccC------------
Q 023822           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYG-VDLVCFTSHP------------   88 (276)
Q Consensus        22 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~------------   88 (276)
                      ..+.....|......+.++..+|++++.|+...=|.|.++|+.++..++.+++-... +.-+.....+            
T Consensus       295 ~~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~  374 (415)
T PF14655_consen  295 APLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKS  374 (415)
T ss_pred             cccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCC
Confidence            455666677778888999999999998888877899999999998888777654322 1111111111            


Q ss_pred             -----Ce-EEEeccCCCCCceEEEEccCCceeeeec
Q 023822           89 -----TT-VIYSSKNGWDESLRLLSLHDNKYLRYFK  118 (276)
Q Consensus        89 -----~~-l~~~~~~~~d~~i~~~d~~~~~~~~~~~  118 (276)
                           .+ ++.+..   .|.|.+|.++++..+..+.
T Consensus       375 ~~~~~l~LvIyapr---Rg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  375 SSRFALFLVIYAPR---RGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             CCcceEEEEEEecc---CCeEEEEecCCCCEEEEEE
Confidence                 11 222333   7889999988877665543

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=95.76  E-value=0.96  Score=37.63  Aligned_cols=30  Identities=27%  Similarity=0.243  Sum_probs=24.9

Q ss_pred             CceEEEECCCCcEEEEeecCCcEEEEECCC
Q 023822          208 DANVVKFSNDGRLMLLTTMEGHIHVLDSFR  237 (276)
Q Consensus       208 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  237 (276)
                      .|.+++..+..+.|++.+.+|.|.+|++..
T Consensus       191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            488899998889999999999999999974

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.73  E-value=0.078  Score=27.71  Aligned_cols=31  Identities=16%  Similarity=0.328  Sum_probs=25.5

Q ss_pred             CcEEEEEEcCCC---CEEEEeecCCeEEEEEccC
Q 023822           35 GRISSMDFHKSS---SYLVTASDDESIRLYDVTA   65 (276)
Q Consensus        35 ~~v~~~~~~~~~---~~l~~~~~d~~i~iwd~~~   65 (276)
                      +.|.++.|+|+.   .+|+.+-..|.|.|+|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468999999844   4788877789999999984

It contains a characteristic DLL sequence motif.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=95.68  E-value=0.094  Score=42.67  Aligned_cols=160  Identities=13%  Similarity=0.055  Sum_probs=96.1

Q ss_pred             eccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeee-ee-eeee----eceE-EEEEeccCCeEEEeccCCCCCc
Q 023822           30 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLK-TI-NSKK----YGVD-LVCFTSHPTTVIYSSKNGWDES  102 (276)
Q Consensus        30 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~-~~~~----~~v~-~~~~~~~~~~l~~~~~~~~d~~  102 (276)
                      +..-...|..+-..|||+.|..-+. .++.++++.+..... .+ ....    ..|+ .+..-..+..+++...   ||.
T Consensus       216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~---dG~  291 (733)
T COG4590         216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHE---DGL  291 (733)
T ss_pred             cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcC---CCc
Confidence            3344566778888999998876655 678888886543211 11 1111    1122 2222335666777777   898


Q ss_pred             eEEE-EccCC-ce----eeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE-eecCCCeeEecCCCcE
Q 023822          103 LRLL-SLHDN-KY----LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLV  175 (276)
Q Consensus       103 i~~~-d~~~~-~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~  175 (276)
                      |..| |.+.+ .+    ++.++-...++..+.-..+.+-+++-+.+|++..+.....+....- -......++++|.+..
T Consensus       292 vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~  371 (733)
T COG4590         292 VSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAY  371 (733)
T ss_pred             eeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccch
Confidence            8888 44332 21    1222222233333332223446778888888888765544433322 2335667899999999


Q ss_pred             EEEeeCCeEEEEecccCC
Q 023822          176 FAVAFGGYIRMFDARKYE  193 (276)
Q Consensus       176 l~~~~d~~i~~~d~~~~~  193 (276)
                      +..-..|.|+++.+++..
T Consensus       372 Ll~e~~gki~~~~l~Nr~  389 (733)
T COG4590         372 LLSEDQGKIRLAQLENRN  389 (733)
T ss_pred             heeecCCceEEEEecCCC
Confidence            998888999999988744

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.66  E-value=0.28  Score=40.08  Aligned_cols=107  Identities=10%  Similarity=0.068  Sum_probs=68.5

Q ss_pred             CeeEecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEe
Q 023822          165 PAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY  244 (276)
Q Consensus       165 ~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  244 (276)
                      +.+.|+..++.+.+...|.+.=|-...........+.. ...++|.++.||+|.+.||+--.++.|.+++....+....+
T Consensus        26 ngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm-~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~  104 (657)
T KOG2377|consen   26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDM-DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY  104 (657)
T ss_pred             cceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeee-cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence            45667777777766666667777766554322223332 34569999999999999999999999999997544333222


Q ss_pred             ec-CCCCCCceEEEEECCCCcEEEEecCCC
Q 023822          245 NV-KPVSRNSTLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       245 ~~-~~~~~~~v~~~~~s~~g~~l~~~~~dg  273 (276)
                      .. .......|....|+.+ .-+|.-+..|
T Consensus       105 ~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G  133 (657)
T KOG2377|consen  105 TQECKTKNANILGFCWTSS-TEIAFITDQG  133 (657)
T ss_pred             HHHhccCcceeEEEEEecC-eeEEEEecCC
Confidence            21 1123445888899876 3344444433

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=95.61  E-value=1  Score=36.96  Aligned_cols=147  Identities=9%  Similarity=0.017  Sum_probs=81.4

Q ss_pred             eEEEEeccCCCEEEEeeCCCeEEEEeccCc--eeeeeEeecCCCeeEecCCCcEEEEeeCCeEEEEecccCCCC---Cee
Q 023822          124 VVSLSLCSSKDCFISGSLDRTVLLWDQRAE--KCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKG---PFD  198 (276)
Q Consensus       124 i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~---~~~  198 (276)
                      ...+..++++.+++.+.....++-||-...  +....-....+..+.+.+++.+++++.+|.+..=+ ..+...   .+.
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~-d~G~~~~~~~f~  319 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYVSK-GTGLTEEDFDFE  319 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEEec-CCCCccccccee
Confidence            344556677776666654433333443221  22222233445678889999999888877765433 222211   111


Q ss_pred             eeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCC
Q 023822          199 IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPF  274 (276)
Q Consensus       199 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~  274 (276)
                      ..........+..+.|.+++..+++ +..|.+.... ..|+.-........-....+.+.|.++++.+++| .+|.
T Consensus       320 ~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~  392 (398)
T PLN00033        320 EADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGV  392 (398)
T ss_pred             ecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcE
Confidence            1112222345888999988875554 4677665554 4555533332111345678899998877766655 4443

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.52  E-value=0.14  Score=38.23  Aligned_cols=66  Identities=14%  Similarity=0.169  Sum_probs=46.6

Q ss_pred             EcCCCCEEEEeecCCeEEEEEccCCeeeeee-------e-------eeeeceEEEEEeccCCeEEEeccCCCCCceEEEE
Q 023822           42 FHKSSSYLVTASDDESIRLYDVTAATCLKTI-------N-------SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS  107 (276)
Q Consensus        42 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-------~-------~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d  107 (276)
                      +..++++|++-+.+|.+++||+.+++.+..-       .       .....|..+.++.+|.-+++-+    +|..+.|+
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls----ng~~y~y~   93 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS----NGDSYSYS   93 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe----CCCEEEec
Confidence            3456788999999999999999988764332       1       2335677777777777666655    66777777


Q ss_pred             ccCC
Q 023822          108 LHDN  111 (276)
Q Consensus       108 ~~~~  111 (276)
                      ..-+
T Consensus        94 ~~L~   97 (219)
T PF07569_consen   94 PDLG   97 (219)
T ss_pred             cccc
Confidence            6543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=95.52  E-value=0.98  Score=36.10  Aligned_cols=147  Identities=17%  Similarity=0.208  Sum_probs=83.6

Q ss_pred             CcceEEEEeccCCCEEEEeeCCCe------EEEEeccCc----eee---eeE--e-ec---------CCCeeEecCCCcE
Q 023822          121 HDRVVSLSLCSSKDCFISGSLDRT------VLLWDQRAE----KCQ---GLL--R-VQ---------GRPAAAYDDQGLV  175 (276)
Q Consensus       121 ~~~i~~~~~~~~~~~l~~~~~d~~------i~iwd~~~~----~~~---~~~--~-~~---------~~~~~~~~~~~~~  175 (276)
                      -+.+..+.+.+++..+++.+.+|.      +..+++...    ..+   ...  . ..         ....+++.+++.+
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            345778888866666777777776      665555431    111   111  1 11         2236777778888


Q ss_pred             EEEee-C------CeEEEEecccCCC-CCee---ee-------eecCCCCCceEEEECCCCcEEEEeec-----CC--c-
Q 023822          176 FAVAF-G------GYIRMFDARKYEK-GPFD---IF-------SVGGDISDANVVKFSNDGRLMLLTTM-----EG--H-  229 (276)
Q Consensus       176 l~~~~-d------~~i~~~d~~~~~~-~~~~---~~-------~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg--~-  229 (276)
                      +++.. +      ..|+.++.. ++. ..+.   .+       .....+..+-+++++|+|+.|+++.+     |+  . 
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~  177 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN  177 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence            77776 6      788888866 222 1110   01       11123456788999999996666532     22  1 


Q ss_pred             ------EEE--EECCC-CcEEEEeecCCC------CCCceEEEEECCCCcEEEE
Q 023822          230 ------IHV--LDSFR-GTLLSTYNVKPV------SRNSTLEASFSPEGMFVIS  268 (276)
Q Consensus       230 ------i~i--~d~~~-~~~~~~~~~~~~------~~~~v~~~~~s~~g~~l~~  268 (276)
                            +++  ||..+ ++....+.....      ....+..+.+.+++++|+.
T Consensus       178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence                  445  45444 333333321111      3567889999999987764

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.45  E-value=0.0022  Score=52.00  Aligned_cols=141  Identities=15%  Similarity=0.179  Sum_probs=94.0

Q ss_pred             EEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEee--CCeEEEEecccCCCCCeeeeee
Q 023822          125 VSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDIFSV  202 (276)
Q Consensus       125 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--d~~i~~~d~~~~~~~~~~~~~~  202 (276)
                      ....|.|.+.-++.++.+..+..||-........-.......++|+-++..++.-.  .+.+++||+.+....   ....
T Consensus        38 i~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq---qLE~  114 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ---QLES  114 (615)
T ss_pred             ceeeEecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH---HHhc
Confidence            44567777777888888888999985543333222334445677877775554443  799999999874321   1111


Q ss_pred             cCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCC
Q 023822          203 GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       203 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  273 (276)
                      .+. ..-.-+.|++.+..++.+...|.+.|++..+.+.....-   .|...+++++|.+.+. .+.++.|.
T Consensus       115 gg~-~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~G---kh~RRgtq~av~lEd~-vil~dcd~  180 (615)
T KOG2247|consen  115 GGT-SSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMG---KHQRRGTQIAVTLEDY-VILCDCDN  180 (615)
T ss_pred             cCc-chHHHHhhccCCccccccccccceEEEeccchhhhhhhc---ccccceeEEEecccce-eeecCcHH
Confidence            111 112227899999999999999999999987766655543   3888999999999765 44444443

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.31  E-value=0.03  Score=49.15  Aligned_cols=115  Identities=17%  Similarity=0.284  Sum_probs=64.2

Q ss_pred             eeccCCCcEEEEEEcC-CCCEEEEeecCCeEEEEEcc--CCeeeeeee-----eeeeceEEEEEec---cCCeEEEeccC
Q 023822           29 SFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVT--AATCLKTIN-----SKKYGVDLVCFTS---HPTTVIYSSKN   97 (276)
Q Consensus        29 ~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~--~~~~~~~~~-----~~~~~v~~~~~~~---~~~~l~~~~~~   97 (276)
                      .+++..+.|-.+.|-. +...++  -.-|.+.||++.  .|+....+.     .....+.-+.|.|   +..++..+-. 
T Consensus       127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~-  203 (1283)
T KOG1916|consen  127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK-  203 (1283)
T ss_pred             HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC-
Confidence            3566778888888853 222222  233678899876  444333332     2223345555554   5555655555 


Q ss_pred             CCCCceEEEEccCCceeeeecccCcceEEEEe-----------ccCCCEEEEeeCCCeEEEEe
Q 023822           98 GWDESLRLLSLHDNKYLRYFKGHHDRVVSLSL-----------CSSKDCFISGSLDRTVLLWD  149 (276)
Q Consensus        98 ~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~-----------~~~~~~l~~~~~d~~i~iwd  149 (276)
                        ++.+++..+.+... ..+.+|...+..++|           +|||+.|+.++.||.++.|.
T Consensus       204 --~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Q  263 (1283)
T KOG1916|consen  204 --GGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQ  263 (1283)
T ss_pred             --CCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceee
Confidence              78888877654432 344557766665554           45555555555555555554

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=95.18  E-value=0.18  Score=26.05  Aligned_cols=30  Identities=20%  Similarity=0.361  Sum_probs=24.3

Q ss_pred             CCCcEEEEee-cCCcEEEEECCCCcEEEEee
Q 023822          216 NDGRLMLLTT-MEGHIHVLDSFRGTLLSTYN  245 (276)
Q Consensus       216 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~  245 (276)
                      |++++|+++. .++.|.++|..+++.+..+.
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~   31 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP   31 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence            5677776655 57899999999999988887

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=95.00  E-value=1.2  Score=39.18  Aligned_cols=90  Identities=16%  Similarity=0.229  Sum_probs=53.3

Q ss_pred             EEEEeccCCCEEEEeeCCC-----eEEEEeccC---ceeeeeE-eecCCCeeEecCCCcEEEEeeCCeEEEEecccCCCC
Q 023822          125 VSLSLCSSKDCFISGSLDR-----TVLLWDQRA---EKCQGLL-RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKG  195 (276)
Q Consensus       125 ~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~---~~~~~~~-~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~  195 (276)
                      ..+.|-|+|..+++-..||     .|..+..+.   ++.-... ........+|+-....++.+..+.+++|-..+..- 
T Consensus       250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyhW-  328 (1243)
T COG5290         250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHW-  328 (1243)
T ss_pred             hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccceEE-
Confidence            3488999999999877665     344444221   1111111 11223356777777778888889999998776331 


Q ss_pred             CeeeeeecCCCCCceEEEECCCC
Q 023822          196 PFDIFSVGGDISDANVVKFSNDG  218 (276)
Q Consensus       196 ~~~~~~~~~~~~~i~~~~~~~~~  218 (276)
                         ..........+.-+.|+|..
T Consensus       329 ---YLK~e~~ip~~s~vkwhpe~  348 (1243)
T COG5290         329 ---YLKVERQIPGISYVKWHPEE  348 (1243)
T ss_pred             ---EEEEeecCCCcceeeecccc
Confidence               12222233456678888854

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=94.98  E-value=1.7  Score=36.35  Aligned_cols=110  Identities=10%  Similarity=-0.008  Sum_probs=52.0

Q ss_pred             CCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeee---eeecCCCCCceEEEECCCC------cEEEEee-------
Q 023822          163 GRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDI---FSVGGDISDANVVKFSNDG------RLMLLTT-------  225 (276)
Q Consensus       163 ~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~------~~l~~~~-------  225 (276)
                      ....++|.|++++|++-. .|.|++++...........   ............|+++|+-      .+|+...       
T Consensus        31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~  110 (454)
T TIGR03606        31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDK  110 (454)
T ss_pred             CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCC
Confidence            344666677776666665 4677666544322111100   0001124567778888763      2333321       


Q ss_pred             ---cCCcEEEEECCCC--c---EEEEeecCC-CCCCceEEEEECCCCcEEEEecCC
Q 023822          226 ---MEGHIHVLDSFRG--T---LLSTYNVKP-VSRNSTLEASFSPEGMFVISGRVS  272 (276)
Q Consensus       226 ---~dg~i~i~d~~~~--~---~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~d  272 (276)
                         ....|.-|.+...  .   ....+...+ .....-..++|.|||+++++.++.
T Consensus       111 ~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       111 ELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             CccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence               1223444544311  1   111121110 011223468899999877766654

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=94.90  E-value=2.8  Score=37.93  Aligned_cols=212  Identities=10%  Similarity=0.086  Sum_probs=120.3

Q ss_pred             EEEEeecCCeEEEEEccCCeee--eeeeeeeeceEEEEEeccCCeEEEeccC-----------CCCCceEEEEccCCcee
Q 023822           48 YLVTASDDESIRLYDVTAATCL--KTINSKKYGVDLVCFTSHPTTVIYSSKN-----------GWDESLRLLSLHDNKYL  114 (276)
Q Consensus        48 ~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~~-----------~~d~~i~~~d~~~~~~~  114 (276)
                      .|+++.. +.+++.-++.-+.+  +++.. ......+++.+....+.+.+..           .+-..++++|-++.+.+
T Consensus       686 ~l~~~~~-~~l~i~tid~iqkl~irtvpl-~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl  763 (1096)
T KOG1897|consen  686 SLASANG-GALTIGTIDEIQKLHIRTVPL-GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVL  763 (1096)
T ss_pred             eEEEecC-CceEEEEecchhhcceeeecC-CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEE
Confidence            4555543 45777666543322  22222 2345566666534333333221           01224666666665544


Q ss_pred             eeeccc-C---cceEEEEeccC-CCEEEEeeC----------CCeEEEEeccCceeeeeEeecCCC--eeEecCCCcEEE
Q 023822          115 RYFKGH-H---DRVVSLSLCSS-KDCFISGSL----------DRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVFA  177 (276)
Q Consensus       115 ~~~~~~-~---~~i~~~~~~~~-~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~l~  177 (276)
                      ...+-. .   -.|.++.|..| +.++++|..          .|.|.++.....+.+...+...+.  ..++.--+..+.
T Consensus       764 ~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkll  843 (1096)
T KOG1897|consen  764 SSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKLL  843 (1096)
T ss_pred             eeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCCeEE
Confidence            332211 1   13555568777 557777753          478888888775545544443333  233333333445


Q ss_pred             EeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECC--CCcEEEEeecCCCCCCceE
Q 023822          178 VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF--RGTLLSTYNVKPVSRNSTL  255 (276)
Q Consensus       178 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~v~  255 (276)
                      ++-+..|++|++...+.    ......+..++..+...-.|..+++|.--+++.+...+  .|.....-+.  -+..+++
T Consensus       844 A~In~~vrLye~t~~~e----Lr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD--~~p~Wmt  917 (1096)
T KOG1897|consen  844 AGINQSVRLYEWTTERE----LRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARD--YNPNWMT  917 (1096)
T ss_pred             EecCcEEEEEEccccce----ehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehh--hCcccee
Confidence            55678999999987643    44444566788888888899999999988887775544  3334333322  3567788


Q ss_pred             EEEECCCCcEEE
Q 023822          256 EASFSPEGMFVI  267 (276)
Q Consensus       256 ~~~~s~~g~~l~  267 (276)
                      ++.+-.+..++.
T Consensus       918 aveil~~d~ylg  929 (1096)
T KOG1897|consen  918 AVEILDDDTYLG  929 (1096)
T ss_pred             eEEEecCceEEe
Confidence            888766655543

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.87  E-value=0.55  Score=38.47  Aligned_cols=133  Identities=6%  Similarity=-0.057  Sum_probs=80.0

Q ss_pred             CCCEEEEeeCCCeEEEEeccCce--eeeeE---eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCC
Q 023822          132 SKDCFISGSLDRTVLLWDQRAEK--CQGLL---RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGD  205 (276)
Q Consensus       132 ~~~~l~~~~~d~~i~iwd~~~~~--~~~~~---~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~  205 (276)
                      |.+..+.+...|.+.=|-.....  ....+   ..+++.++.|++|++++++-. +..|.+++....+............
T Consensus        32 DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k  111 (657)
T KOG2377|consen   32 DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTK  111 (657)
T ss_pred             cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccC
Confidence            33333344444555666554322  11122   445788999999999999988 8999999985433322223333344


Q ss_pred             CCCceEEEECCCCcEEEEeecCCcEEEEECCCCc-EEEEeecCCCCCCceEEEEECCCCcEEEEe
Q 023822          206 ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT-LLSTYNVKPVSRNSTLEASFSPEGMFVISG  269 (276)
Q Consensus       206 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  269 (276)
                      ...|....|+.+ .-+|..+..| +.+|-....+ .++..+   .+...|.-..|.++.+.+.-+
T Consensus       112 ~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVk---s~~~nvnWy~yc~et~v~LL~  171 (657)
T KOG2377|consen  112 NANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVK---SHNLNVNWYMYCPETAVILLS  171 (657)
T ss_pred             cceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhh---hcccCccEEEEccccceEeee
Confidence            456888899877 4466665554 6666654332 233333   466777778888887654433

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=94.71  E-value=1.6  Score=34.05  Aligned_cols=218  Identities=12%  Similarity=0.138  Sum_probs=122.1

Q ss_pred             EEEEEEcCCCCEEEEeecCCeEEEEEcc------CC-eeeeeeee-----eeeceEEEEEeccCCe------------EE
Q 023822           37 ISSMDFHKSSSYLVTASDDESIRLYDVT------AA-TCLKTINS-----KKYGVDLVCFTSHPTT------------VI   92 (276)
Q Consensus        37 v~~~~~~~~~~~l~~~~~d~~i~iwd~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~~------------l~   92 (276)
                      -+.|+++|.+.+-++....+...+||..      .. ..+..+..     .....+.+.|+....+            ++
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi  104 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL  104 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence            4679999988877777778899999986      12 22333331     1235677777744332            56


Q ss_pred             EeccCCCCCceEEEEccCCce-----eeeeccc-Ccc-eEEEEeccC--CCEEEE-eeCCCeEEEEeccCceeee--eEe
Q 023822           93 YSSKNGWDESLRLLSLHDNKY-----LRYFKGH-HDR-VVSLSLCSS--KDCFIS-GSLDRTVLLWDQRAEKCQG--LLR  160 (276)
Q Consensus        93 ~~~~~~~d~~i~~~d~~~~~~-----~~~~~~~-~~~-i~~~~~~~~--~~~l~~-~~~d~~i~iwd~~~~~~~~--~~~  160 (276)
                      .+++   ||+|.-|...-+..     ...+... ... ...+++...  +++|.. --..++|.+||-.-.+...  .+.
T Consensus       105 f~tE---dGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~  181 (336)
T TIGR03118       105 FVTE---DGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI  181 (336)
T ss_pred             EEeC---CceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence            6666   99999998533222     1122211 122 334555433  444444 3457889999855332211  111


Q ss_pred             ecCCCeeEecC------CCcEEEE--------------eeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECC----
Q 023822          161 VQGRPAAAYDD------QGLVFAV--------------AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN----  216 (276)
Q Consensus       161 ~~~~~~~~~~~------~~~~l~~--------------~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~----  216 (276)
                      ...++ .-|.|      .++++++              ..-|.|-+||....   .+..+...+.-...+.++..|    
T Consensus       182 DP~iP-agyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~---l~~r~as~g~LNaPWG~a~APa~FG  257 (336)
T TIGR03118       182 DPALP-AGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ---LLRRVASSGRLNAPWGLAIAPESFG  257 (336)
T ss_pred             CCCCC-CCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc---EEEEeccCCcccCCceeeeChhhhC
Confidence            11111 01111      1222221              11368888888652   122233344445667788766    


Q ss_pred             --CCcEEEEeecCCcEEEEECCCCcEEEEeecCCCC---CCceEEEEECC
Q 023822          217 --DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS---RNSTLEASFSP  261 (276)
Q Consensus       217 --~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~v~~~~~s~  261 (276)
                        .|.+|+---.||+|..||..+++.+-.+....++   -..++.|+|-.
T Consensus       258 ~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       258 SLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             CCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence              4566665557999999999999988887742221   13457788855

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.70  E-value=2.8  Score=36.97  Aligned_cols=111  Identities=11%  Similarity=0.085  Sum_probs=68.7

Q ss_pred             eEEEEecc--CCCEEEEeeCCCeEEEEeccC-------c----e---------eeeeE-eecCCCeeEec--CCCcEEEE
Q 023822          124 VVSLSLCS--SKDCFISGSLDRTVLLWDQRA-------E----K---------CQGLL-RVQGRPAAAYD--DQGLVFAV  178 (276)
Q Consensus       124 i~~~~~~~--~~~~l~~~~~d~~i~iwd~~~-------~----~---------~~~~~-~~~~~~~~~~~--~~~~~l~~  178 (276)
                      |+.|....  ....|+.|..||.|.+|.++.       .    .         +...+ -......++++  ...+++|+
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAV  182 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAV  182 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEE
Confidence            44444432  455899999999999997631       1    0         00111 11234467887  77899999


Q ss_pred             ee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCC---c---EEEEeecCCcEEEEEC
Q 023822          179 AF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG---R---LMLLTTMEGHIHVLDS  235 (276)
Q Consensus       179 ~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~---~l~~~~~dg~i~i~d~  235 (276)
                      +. ...|.||-......... ......+...|.+|+|-++.   .   .+++++-.|.+.+|++
T Consensus       183 SsNs~~VTVFaf~l~~~r~~-~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  183 SSNSQEVTVFAFALVDERFY-HVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ecCCceEEEEEEeccccccc-cccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            98 46677766544221111 11112355678899998753   2   7788889999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.59  E-value=2.4  Score=39.42  Aligned_cols=30  Identities=17%  Similarity=0.377  Sum_probs=26.0

Q ss_pred             CcEEEEEEcCCCCEEEEeecCCeEEEEEcc
Q 023822           35 GRISSMDFHKSSSYLVTASDDESIRLYDVT   64 (276)
Q Consensus        35 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~   64 (276)
                      .....++|+|.-.++|.+...|.|+++-..
T Consensus        36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~   65 (993)
T KOG1983|consen   36 STPSALAFDPTQGLLAIGTRTGAIKIYGQP   65 (993)
T ss_pred             CCCcceeeccccceEEEEEecccEEEeccc
Confidence            456678999999999999999999999754

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.56  E-value=1  Score=41.87  Aligned_cols=137  Identities=12%  Similarity=0.186  Sum_probs=86.0

Q ss_pred             CCceEEEEccCCceeeeecccCcceEEEEec-c-------CCCEEEEeeCCCeEEEEeccCceee---------eeE--e
Q 023822          100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLC-S-------SKDCFISGSLDRTVLLWDQRAEKCQ---------GLL--R  160 (276)
Q Consensus       100 d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~-~-------~~~~l~~~~~d~~i~iwd~~~~~~~---------~~~--~  160 (276)
                      |+.+.+|+.+++.....+.+-...|..+..- |       .=++++....--.|.++-+.-.+..         ..+  .
T Consensus        98 Dn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~d  177 (1311)
T KOG1900|consen   98 DNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVD  177 (1311)
T ss_pred             CCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecC
Confidence            8999999999977777776666666655432 2       2233333333445565543321110         111  2


Q ss_pred             ecCCCeeEecCCCcEEEEeeCCeEEEEecccCC------CC-------------Ceeeeeec-CCCCCceEEEECCCCcE
Q 023822          161 VQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYE------KG-------------PFDIFSVG-GDISDANVVKFSNDGRL  220 (276)
Q Consensus       161 ~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~------~~-------------~~~~~~~~-~~~~~i~~~~~~~~~~~  220 (276)
                      .-.+.++....+|+++.+|.||.|+-.-.+...      +.             |. ...+. .+..+|..++....-..
T Consensus       178 g~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs-~~~~~~~~~dpI~qi~ID~SR~I  256 (1311)
T KOG1900|consen  178 GVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPS-LLSVPGSSKDPIRQITIDNSRNI  256 (1311)
T ss_pred             CceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhh-hhcCCCCCCCcceeeEeccccce
Confidence            233567888899999999998855433222211      00             01 12223 45678999999988889


Q ss_pred             EEEeecCCcEEEEECCC
Q 023822          221 MLLTTMEGHIHVLDSFR  237 (276)
Q Consensus       221 l~~~~~dg~i~i~d~~~  237 (276)
                      +++-+..|.|.+||+..
T Consensus       257 lY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  257 LYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             eeeeccCceEEEEEccC
Confidence            99999999999999865

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=94.10  E-value=2.6  Score=34.02  Aligned_cols=42  Identities=12%  Similarity=0.027  Sum_probs=22.3

Q ss_pred             cEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCC
Q 023822          229 HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       229 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  273 (276)
                      .+.+||..+.+-...-..   ....-...+..-++++++.|+.+.
T Consensus       291 ~~e~yd~~~~~W~~~~~l---p~~~~~~~~~~~~~~iyv~GG~~~  332 (346)
T TIGR03547       291 SSEVYALDNGKWSKVGKL---PQGLAYGVSVSWNNGVLLIGGENS  332 (346)
T ss_pred             EeeEEEecCCcccccCCC---CCCceeeEEEEcCCEEEEEeccCC
Confidence            467888776543222211   111122233455788889988764

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=94.04  E-value=2.3  Score=33.29  Aligned_cols=169  Identities=12%  Similarity=0.101  Sum_probs=88.5

Q ss_pred             CceEEEEccCCceeeeecc------cCcceEEEEeccCC-----CEEE-EeeCCCeEEEEeccCceeeeeEeecC-----
Q 023822          101 ESLRLLSLHDNKYLRYFKG------HHDRVVSLSLCSSK-----DCFI-SGSLDRTVLLWDQRAEKCQGLLRVQG-----  163 (276)
Q Consensus       101 ~~i~~~d~~~~~~~~~~~~------~~~~i~~~~~~~~~-----~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~-----  163 (276)
                      -.|.+||+.+++.++++.-      ..+.+..+.+....     .++. +=+..+.|.++|+.+++..+.++...     
T Consensus        34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~  113 (287)
T PF03022_consen   34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPD  113 (287)
T ss_dssp             -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred             cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence            4677788888877666532      24567777776522     2333 33334689999999988766652211     


Q ss_pred             ----------------CCeeEecC---CCcEEEEeeCCeEEEEeccc--CCCCC---ee-----eeeecCCCCCceEEEE
Q 023822          164 ----------------RPAAAYDD---QGLVFAVAFGGYIRMFDARK--YEKGP---FD-----IFSVGGDISDANVVKF  214 (276)
Q Consensus       164 ----------------~~~~~~~~---~~~~l~~~~d~~i~~~d~~~--~~~~~---~~-----~~~~~~~~~~i~~~~~  214 (276)
                                      +..++.+|   +++.|.-..=..-++|.+.+  .....   ..     ...+.........+++
T Consensus       114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~  193 (287)
T PF03022_consen  114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI  193 (287)
T ss_dssp             SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred             ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence                            11233332   44444444311112332221  11100   00     1111111235667899


Q ss_pred             CCCCcEEEEeecCCcEEEEECCCC---cEEEEeecCCCCCCceEEEEECC--CCcEEEEe
Q 023822          215 SNDGRLMLLTTMEGHIHVLDSFRG---TLLSTYNVKPVSRNSTLEASFSP--EGMFVISG  269 (276)
Q Consensus       215 ~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~~  269 (276)
                      +++|.++++--..+.|..|+..+.   +....+...+..-..+.++.+.+  +|.+.+..
T Consensus       194 D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  194 DPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             ETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             CCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence            999998888888999999997651   12222322111245788999999  77655443

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=93.98  E-value=1.2  Score=29.97  Aligned_cols=110  Identities=12%  Similarity=0.110  Sum_probs=68.0

Q ss_pred             EEEEcCCCCEEEEeecCCeEEEEEccCCe--------eeeeeeeeeeceEEEEEec-----cCCeEEEeccCCCCCceEE
Q 023822           39 SMDFHKSSSYLVTASDDESIRLYDVTAAT--------CLKTINSKKYGVDLVCFTS-----HPTTVIYSSKNGWDESLRL  105 (276)
Q Consensus        39 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~~~~d~~i~~  105 (276)
                      .-.|......|++++.-|.|.|++.....        .+..+.. ...|++++--+     ....|+.++    ...|..
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi-n~~italaaG~l~~~~~~D~LliGt----~t~lla   77 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI-NQEITALAAGRLKPDDGRDCLLIGT----QTSLLA   77 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC-CCceEEEEEEecCCCCCcCEEEEec----cceEEE
Confidence            34566666678888888999999876332        2233332 34567765544     345677776    789999


Q ss_pred             EEccCCceeeeecccCcceEEEEecc---CCCEEEEeeCCCeEEEEeccCce
Q 023822          106 LSLHDNKYLRYFKGHHDRVVSLSLCS---SKDCFISGSLDRTVLLWDQRAEK  154 (276)
Q Consensus       106 ~d~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~  154 (276)
                      ||+..+.-+.. +.-.+.+.++.+-.   ...-++..+.+..|.-||....+
T Consensus        78 YDV~~N~d~Fy-ke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e  128 (136)
T PF14781_consen   78 YDVENNSDLFY-KEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE  128 (136)
T ss_pred             EEcccCchhhh-hhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence            99988765443 23446677776632   12234444446777777765544

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=93.75  E-value=0.71  Score=33.03  Aligned_cols=31  Identities=16%  Similarity=0.116  Sum_probs=24.9

Q ss_pred             cceEEEEeccCC------CEEEEeeCCCeEEEEeccC
Q 023822          122 DRVVSLSLCSSK------DCFISGSLDRTVLLWDQRA  152 (276)
Q Consensus       122 ~~i~~~~~~~~~------~~l~~~~~d~~i~iwd~~~  152 (276)
                      ..+..++|+|.|      -+|++.+.++.|.+|....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            378899999843      3788889999999998664

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=93.57  E-value=0.048  Score=47.95  Aligned_cols=129  Identities=15%  Similarity=0.198  Sum_probs=75.8

Q ss_pred             cEEEEEEcC---CCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEE-----------EEeccCCeEEEeccCCCCC
Q 023822           36 RISSMDFHK---SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLV-----------CFTSHPTTVIYSSKNGWDE  101 (276)
Q Consensus        36 ~v~~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~-----------~~~~~~~~l~~~~~~~~d~  101 (276)
                      .+.-+.|.|   +..++..+-.++++++.++.+... ..+..|...+..+           ..+|||+.++.+..   ||
T Consensus       182 ~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~---dG  257 (1283)
T KOG1916|consen  182 DPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAIS---DG  257 (1283)
T ss_pred             CcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeec---CC
Confidence            345555654   556777777888888877654322 3333454443332           46899999999998   88


Q ss_pred             ceEEEEcc-----CCceeeeecccCc-ceEEEEeccCC---------CEEEEee-CCCeEEEEeccCceeeeeEeecCCC
Q 023822          102 SLRLLSLH-----DNKYLRYFKGHHD-RVVSLSLCSSK---------DCFISGS-LDRTVLLWDQRAEKCQGLLRVQGRP  165 (276)
Q Consensus       102 ~i~~~d~~-----~~~~~~~~~~~~~-~i~~~~~~~~~---------~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~  165 (276)
                      .++.|.+.     ..+++..++.|.+ +-.|..++.+.         .++++++ .+..+++|.....+|...+....+.
T Consensus       258 ~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~~d~v~  337 (1283)
T KOG1916|consen  258 SVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKLIDGVQ  337 (1283)
T ss_pred             ccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhcccceE
Confidence            88888753     2345556677763 32232243321         1333433 3567899988777776443334444


Q ss_pred             eeE
Q 023822          166 AAA  168 (276)
Q Consensus       166 ~~~  168 (276)
                      .+.
T Consensus       338 iV~  340 (1283)
T KOG1916|consen  338 IVG  340 (1283)
T ss_pred             eec
Confidence            444

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=93.49  E-value=2.7  Score=32.28  Aligned_cols=189  Identities=11%  Similarity=0.048  Sum_probs=120.1

Q ss_pred             cEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceee
Q 023822           36 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR  115 (276)
Q Consensus        36 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~  115 (276)
                      .-..++-.|||..-+++...+.|--.|..+|+....-.+....-..+..-|++..-++-..   . .|.-.|.++.+..+
T Consensus        63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~---~-aI~R~dpkt~evt~  138 (353)
T COG4257          63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTG---L-AIGRLDPKTLEVTR  138 (353)
T ss_pred             CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCc---c-eeEEecCcccceEE
Confidence            3456777788887778777777777788888765554444555667777788776655432   2 45555555544322


Q ss_pred             ---eecccCcceEEEEeccCCCEEEEeeCC---------CeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEee-CC
Q 023822          116 ---YFKGHHDRVVSLSLCSSKDCFISGSLD---------RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF-GG  182 (276)
Q Consensus       116 ---~~~~~~~~i~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-d~  182 (276)
                         ..+..........|.+.|++-+++...         +.|++|+..        .......++..|+|.+..++. ++
T Consensus       139 f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP--------qG~gpyGi~atpdGsvwyaslagn  210 (353)
T COG4257         139 FPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP--------QGGGPYGICATPDGSVWYASLAGN  210 (353)
T ss_pred             eecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC--------CCCCCcceEECCCCcEEEEecccc
Confidence               122334567788899999988877631         223333322        334567899999998888776 78


Q ss_pred             eEEEEecccCCCCCeeeeeec-CCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCc
Q 023822          183 YIRMFDARKYEKGPFDIFSVG-GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT  239 (276)
Q Consensus       183 ~i~~~d~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  239 (276)
                      .|...|.......   .+... ........+--+|.|+.-++....+.+..||-.+..
T Consensus       211 aiaridp~~~~ae---v~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s  265 (353)
T COG4257         211 AIARIDPFAGHAE---VVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS  265 (353)
T ss_pred             ceEEcccccCCcc---eecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc
Confidence            8888887765322   11111 112344556667888888887778888888865443

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=93.42  E-value=2.3  Score=32.25  Aligned_cols=135  Identities=13%  Similarity=0.083  Sum_probs=76.2

Q ss_pred             EEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeee------cccCcceEEEEecc
Q 023822           58 IRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF------KGHHDRVVSLSLCS  131 (276)
Q Consensus        58 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~------~~~~~~i~~~~~~~  131 (276)
                      -.+||+.+++....-...+.-+..-.+.+||+.+.+++.......+++++.........+      -.....--+....|
T Consensus        48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~  127 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP  127 (243)
T ss_pred             EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence            357888876543222222223344467789999999887543567888886541111111      11223334455567


Q ss_pred             CCCEEEEeeCCC-eEEEEeccCc--eeee--eE-------eecCCCeeEecCCCcEEEEeeCCeEEEEecccCC
Q 023822          132 SKDCFISGSLDR-TVLLWDQRAE--KCQG--LL-------RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYE  193 (276)
Q Consensus       132 ~~~~l~~~~~d~-~i~iwd~~~~--~~~~--~~-------~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~  193 (276)
                      ||+.|+.|+.+. +..+|.-+..  ....  .+       ...-.+.+...|+|++++.+..+ -.+||..+.+
T Consensus       128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~-s~i~d~~~n~  200 (243)
T PF07250_consen  128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG-SIIYDYKTNT  200 (243)
T ss_pred             CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC-cEEEeCCCCe
Confidence            999888888764 3445543211  1111  11       11223477888999999888754 4566877643

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=93.41  E-value=5.8  Score=35.83  Aligned_cols=104  Identities=16%  Similarity=0.107  Sum_probs=66.0

Q ss_pred             CCeEEEeccCCCCCceEEEEccCCceeeeecccCcc--------eEEEEecc----------------CCCEEEEeeCCC
Q 023822           88 PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDR--------VVSLSLCS----------------SKDCFISGSLDR  143 (276)
Q Consensus        88 ~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--------i~~~~~~~----------------~~~~l~~~~~d~  143 (276)
                      +..+++++.   ++.|.-.|..+++.+..+......        ...+.+..                .+..++.++.|+
T Consensus       194 gg~lYv~t~---~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg  270 (764)
T TIGR03074       194 GDTLYLCTP---HNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDA  270 (764)
T ss_pred             CCEEEEECC---CCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCC
Confidence            556666666   889999999999988876532211        11222211                234788888999


Q ss_pred             eEEEEeccCceeeeeEeecCC----------C----eeEecC---CCcEEEEee----------CCeEEEEecccCCC
Q 023822          144 TVLLWDQRAEKCQGLLRVQGR----------P----AAAYDD---QGLVFAVAF----------GGYIRMFDARKYEK  194 (276)
Q Consensus       144 ~i~iwd~~~~~~~~~~~~~~~----------~----~~~~~~---~~~~l~~~~----------d~~i~~~d~~~~~~  194 (276)
                      .+.-.|.++++..-.+..+..          .    ...-.|   ++.+++.+.          +|.|+-+|.++++.
T Consensus       271 ~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl  348 (764)
T TIGR03074       271 RLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGAL  348 (764)
T ss_pred             eEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcE
Confidence            999999999988765522110          0    111122   455666543          47899999998774

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PRK10115 protease 2; Provisional

Probab=93.37  E-value=5.6  Score=35.55  Aligned_cols=112  Identities=8%  Similarity=-0.003  Sum_probs=67.1

Q ss_pred             ceEEEEEeccCCeEEEeccCCC--CCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCC------CeEEEEe
Q 023822           78 GVDLVCFTSHPTTVIYSSKNGW--DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLD------RTVLLWD  149 (276)
Q Consensus        78 ~v~~~~~~~~~~~l~~~~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------~~i~iwd  149 (276)
                      .+..+.++|++++++.+...+.  ...|++.|+.+++.+...-....  ..++|.+|++.|+....+      ..|+.++
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            4677899999999988765322  23588889988764322211111  459999999866555432      3688888


Q ss_pred             ccCc--eeeeeEeec-C-CC-eeEecCCCcEEEEee----CCeEEEEeccc
Q 023822          150 QRAE--KCQGLLRVQ-G-RP-AAAYDDQGLVFAVAF----GGYIRMFDARK  191 (276)
Q Consensus       150 ~~~~--~~~~~~~~~-~-~~-~~~~~~~~~~l~~~~----d~~i~~~d~~~  191 (276)
                      +.++  +-...+... . .. ....+.++++++...    ++.+.+++...
T Consensus       206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~  256 (686)
T PRK10115        206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAEL  256 (686)
T ss_pred             CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcC
Confidence            8877  323333321 1 11 223344665544443    47889998543

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=93.35  E-value=3.9  Score=33.70  Aligned_cols=143  Identities=10%  Similarity=0.022  Sum_probs=79.8

Q ss_pred             EEEEEeccCCeEEEeccCCCCCceE-EEEccCCce--eeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCcee-
Q 023822           80 DLVCFTSHPTTVIYSSKNGWDESLR-LLSLHDNKY--LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC-  155 (276)
Q Consensus        80 ~~~~~~~~~~~l~~~~~~~~d~~i~-~~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-  155 (276)
                      ..+..++++..++++.    .|.+. -||-  +..  ...-......+..+.+.+++..++++ .+|.+.. ....++. 
T Consensus       242 ~~v~~~~dG~~~~vg~----~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~  313 (398)
T PLN00033        242 STVNRSPDGDYVAVSS----RGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTE  313 (398)
T ss_pred             eeEEEcCCCCEEEEEC----CccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcc
Confidence            3455667777777776    44433 2332  221  11122235568899999998876655 5666543 3333321 


Q ss_pred             ----eeeEee----cCCCeeEecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecC
Q 023822          156 ----QGLLRV----QGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME  227 (276)
Q Consensus       156 ----~~~~~~----~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  227 (276)
                          ......    ..+..+.+.+++..++++..|.+....- .++.-. .......-......+.|.++++.+++ +.+
T Consensus       314 ~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D-~G~tW~-~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~  390 (398)
T PLN00033        314 EDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTD-GGKSWK-RDKGADNIAANLYSVKFFDDKKGFVL-GND  390 (398)
T ss_pred             cccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCC-CCccee-EccccCCCCcceeEEEEcCCCceEEE-eCC
Confidence                122211    2255688889999999999887766642 222110 01111223356788999887765554 467


Q ss_pred             CcEEEE
Q 023822          228 GHIHVL  233 (276)
Q Consensus       228 g~i~i~  233 (276)
                      |.|.-|
T Consensus       391 G~il~~  396 (398)
T PLN00033        391 GVLLRY  396 (398)
T ss_pred             cEEEEe
Confidence            776554

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=93.31  E-value=0.96  Score=32.38  Aligned_cols=31  Identities=19%  Similarity=0.269  Sum_probs=25.4

Q ss_pred             CCceEEEECCCC------cEEEEeecCCcEEEEECCC
Q 023822          207 SDANVVKFSNDG------RLMLLTTMEGHIHVLDSFR  237 (276)
Q Consensus       207 ~~i~~~~~~~~~------~~l~~~~~dg~i~i~d~~~  237 (276)
                      ..+..++|||.|      -+|++.+.++.|.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            378899999954      3688889999999998653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=93.22  E-value=0.57  Score=24.11  Aligned_cols=32  Identities=9%  Similarity=0.163  Sum_probs=24.6

Q ss_pred             ccCCeEEEeccCCCCCceEEEEccCCceeeeecc
Q 023822           86 SHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKG  119 (276)
Q Consensus        86 ~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~  119 (276)
                      |++++++++...  ++.|.++|..+++.+..+..
T Consensus         1 pd~~~lyv~~~~--~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSG--SNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCC--CCEEEEEECCCCeEEEEEEC
Confidence            567777777653  88999999988887777654

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=93.19  E-value=3.1  Score=36.77  Aligned_cols=112  Identities=9%  Similarity=0.143  Sum_probs=71.4

Q ss_pred             cEEEEEEcC--CCCEEEEeecCCeEEEEEccC-------C----e---------eeeeeeeeeeceEEEEEe--ccCCeE
Q 023822           36 RISSMDFHK--SSSYLVTASDDESIRLYDVTA-------A----T---------CLKTINSKKYGVDLVCFT--SHPTTV   91 (276)
Q Consensus        36 ~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~-------~----~---------~~~~~~~~~~~v~~~~~~--~~~~~l   91 (276)
                      .|+-|....  ....|+.+..||.|.+|.+++       .    +         +-..+. -...+++++++  ...+.+
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI  180 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI  180 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence            455555543  556889999999999997631       1    0         111111 23468889988  666777


Q ss_pred             EEeccCCCCCceEEEEccC--Cceee-eecccCcceEEEEeccCC---C---EEEEeeCCCeEEEEecc
Q 023822           92 IYSSKNGWDESLRLLSLHD--NKYLR-YFKGHHDRVVSLSLCSSK---D---CFISGSLDRTVLLWDQR  151 (276)
Q Consensus        92 ~~~~~~~~d~~i~~~d~~~--~~~~~-~~~~~~~~i~~~~~~~~~---~---~l~~~~~d~~i~iwd~~  151 (276)
                      |+++.   ...|.||-...  .+... .-..+...|.+++|-++.   .   ++++++-.|.+.+|++.
T Consensus       181 AVSsN---s~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  181 AVSSN---SQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             EEecC---CceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence            77765   66677765443  22111 111256678899997643   2   78889999999998883

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=93.04  E-value=1.9  Score=29.14  Aligned_cols=109  Identities=11%  Similarity=0.102  Sum_probs=65.3

Q ss_pred             EEeccCCCEEEEeeCCCeEEEEeccCce--------eeeeEe-ecCCCeeE---ec--CCCcEEEEeeCCeEEEEecccC
Q 023822          127 LSLCSSKDCFISGSLDRTVLLWDQRAEK--------CQGLLR-VQGRPAAA---YD--DQGLVFAVAFGGYIRMFDARKY  192 (276)
Q Consensus       127 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~-~~~~~~~~---~~--~~~~~l~~~~d~~i~~~d~~~~  192 (276)
                      -.|......|+.++.-|+|.|++.....        .+..+. ...+.+++   +.  .+...|..++...+..||+...
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N   83 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENN   83 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccC
Confidence            3455556678888888999999866332        233332 22344443   32  2457889999999999999876


Q ss_pred             CCCCeeeeeecCCCCCceEEEECC---CCcEEEEeecCCcEEEEECCCCcE
Q 023822          193 EKGPFDIFSVGGDISDANVVKFSN---DGRLMLLTTMEGHIHVLDSFRGTL  240 (276)
Q Consensus       193 ~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~  240 (276)
                      ..    ++..+ -...++++.+-.   ...-|+..+.+..|.-||..-.+.
T Consensus        84 ~d----~Fyke-~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~  129 (136)
T PF14781_consen   84 SD----LFYKE-VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI  129 (136)
T ss_pred             ch----hhhhh-CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence            54    22222 224566666532   122344445566788888544443

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=93.04  E-value=4.2  Score=33.18  Aligned_cols=152  Identities=14%  Similarity=0.018  Sum_probs=0.0

Q ss_pred             CCeEEEeccCCCCCceEEEEccCCceeeeecccC--cceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecC--
Q 023822           88 PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHH--DRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--  163 (276)
Q Consensus        88 ~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--  163 (276)
                      +..+.++..   +|.|.-.|..+++.+.....-.  ..+..-.+..+|+ ++.++.++.++.+|.++++..-......  
T Consensus        68 dg~v~~~~~---~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~  143 (370)
T COG1520          68 DGTVYVGTR---DGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSP  143 (370)
T ss_pred             CCeEEEecC---CCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCe


Q ss_pred             -CCeeEecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeec--CCcEEEEECCCCcE
Q 023822          164 -RPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM--EGHIHVLDSFRGTL  240 (276)
Q Consensus       164 -~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~  240 (276)
                       ......-.++.++..+.++.+.-.|..+++.......... ....+..-.. .....++.+..  ++.+.-.|..+|+.
T Consensus       144 ~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~-~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~~G~~  221 (370)
T COG1520         144 YYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAP-LSLSIYGSPA-IASGTVYVGSDGYDGILYALNAEDGTL  221 (370)
T ss_pred             EEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCc-cccccccCce-eecceEEEecCCCcceEEEEEccCCcE


Q ss_pred             EEEee
Q 023822          241 LSTYN  245 (276)
Q Consensus       241 ~~~~~  245 (276)
                      .-..+
T Consensus       222 ~w~~~  226 (370)
T COG1520         222 KWSQK  226 (370)
T ss_pred             eeeee

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.82  E-value=1.5  Score=36.79  Aligned_cols=27  Identities=4%  Similarity=-0.097  Sum_probs=20.8

Q ss_pred             CcEEEEEEcCCCCEEEEeecCCeEEEE
Q 023822           35 GRISSMDFHKSSSYLVTASDDESIRLY   61 (276)
Q Consensus        35 ~~v~~~~~~~~~~~l~~~~~d~~i~iw   61 (276)
                      -.|..+..++.|..++-++.+|.+.++
T Consensus       104 feV~~vl~s~~GS~VaL~G~~Gi~vMe  130 (741)
T KOG4460|consen  104 FEVYQVLLSPTGSHVALIGIKGLMVME  130 (741)
T ss_pred             EEEEEEEecCCCceEEEecCCeeEEEE
Confidence            357778889999999988888855443

>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]

Probab=92.74  E-value=6.6  Score=34.66  Aligned_cols=170  Identities=15%  Similarity=0.112  Sum_probs=88.2

Q ss_pred             eeeeeceEEEEEeccCCeEEEeccCC-CCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEecc
Q 023822           73 NSKKYGVDLVCFTSHPTTVIYSSKNG-WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR  151 (276)
Q Consensus        73 ~~~~~~v~~~~~~~~~~~l~~~~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~  151 (276)
                      ..+...+..+.|+|++..++.....+ ....+.+.+.. +    .+..+...+....|+|+++.++....+...+.-   
T Consensus        56 ~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~-g----~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~---  127 (620)
T COG1506          56 LTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVG-G----LITKTAFGVSDARWSPDGDRIAFLTAEGASKRD---  127 (620)
T ss_pred             cccCCcccccccCCCCCEEEEEeccCCCcceEEEEecC-C----ceeeeecccccceeCCCCCeEEEEecccccccC---
Confidence            34556788899999999999888322 12334444443 2    333456677888999999988772222211000   


Q ss_pred             CceeeeeEeecCCCeeEecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCc--
Q 023822          152 AEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGH--  229 (276)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~--  229 (276)
                       +.   ......-..+.+...+     +....+.+.|..+ .     ..........+....++++++.++....+..  
T Consensus       128 -~~---~~~~~~~~~~~~~~~g-----~~~~~l~~~d~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (620)
T COG1506         128 -GG---DHLFVDRLPVWFDGRG-----GERSDLYVVDIES-K-----LIKLGLGNLDVVSFATDGDGRLVASIRLDDDAD  192 (620)
T ss_pred             -Cc---eeeeecccceeecCCC-----CcccceEEEccCc-c-----cccccCCCCceeeeeeCCCCceeEEeeeccccC
Confidence             00   0000000112222222     1134455555543 1     2222334445666777777776666543331  


Q ss_pred             -----EEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEe
Q 023822          230 -----IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG  269 (276)
Q Consensus       230 -----i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  269 (276)
                           ..++...++.......    ....+..+.|.++|+.++..
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~gk~~~~~  233 (620)
T COG1506         193 PWVTNLYVLIEGNGELESLTP----GEGSISKLAFDADGKSIALL  233 (620)
T ss_pred             CceEeeEEEecCCCceEEEcC----CCceeeeeeeCCCCCeeEEe
Confidence                 3333333444443333    45668889999999855443

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=92.72  E-value=5  Score=33.25  Aligned_cols=141  Identities=14%  Similarity=0.102  Sum_probs=83.5

Q ss_pred             CCCEEEEeecCCeEEEEEccCCe-----eeeeeeeeeeceEEEEEec-----cCCeEEEeccCCCCCceEEEEccCC--c
Q 023822           45 SSSYLVTASDDESIRLYDVTAAT-----CLKTINSKKYGVDLVCFTS-----HPTTVIYSSKNGWDESLRLLSLHDN--K  112 (276)
Q Consensus        45 ~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~~~~d~~i~~~d~~~~--~  112 (276)
                      +...+++|+..|.++||+.....     .+.+. .-+.+|..+..-.     ....|++-.    -..+.+|.+...  .
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaVLh----P~kl~vY~v~~~~g~  110 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAVLH----PRKLSVYSVSLVDGT  110 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEEec----CCEEEEEEEEecCCC
Confidence            34589999999999999986433     11111 2235677776542     234555554    788888887322  1


Q ss_pred             -------eeeeecccCc--ceEEEEecc----C-CCEEEEeeCCCeEEEEeccCceeeeeEeecC-CCeeEecCCCcEEE
Q 023822          113 -------YLRYFKGHHD--RVVSLSLCS----S-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-RPAAAYDDQGLVFA  177 (276)
Q Consensus       113 -------~~~~~~~~~~--~i~~~~~~~----~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~  177 (276)
                             .+..+..|.-  ....++.-|    . ..++.+=+.||.+.+|+-+.......+...- ...+.+.+....++
T Consensus       111 ~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfv  190 (418)
T PF14727_consen  111 VEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFV  190 (418)
T ss_pred             cccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEE
Confidence                   1222223332  223333322    2 3578888999999999977655444442222 22577777665555


Q ss_pred             Eee-CCeEEEEecc
Q 023822          178 VAF-GGYIRMFDAR  190 (276)
Q Consensus       178 ~~~-d~~i~~~d~~  190 (276)
                      +++ +..+.-|...
T Consensus       191 t~sss~~l~~Yky~  204 (418)
T PF14727_consen  191 TASSSWTLECYKYQ  204 (418)
T ss_pred             EecCceeEEEecHH
Confidence            554 7788888764

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=92.64  E-value=0.92  Score=39.19  Aligned_cols=71  Identities=18%  Similarity=0.301  Sum_probs=43.9

Q ss_pred             ccCCeEEEeccCCCCCceEEEEccC----Cceeee-----------ecc-----------cCcceEEEEecc----CCCE
Q 023822           86 SHPTTVIYSSKNGWDESLRLLSLHD----NKYLRY-----------FKG-----------HHDRVVSLSLCS----SKDC  135 (276)
Q Consensus        86 ~~~~~l~~~~~~~~d~~i~~~d~~~----~~~~~~-----------~~~-----------~~~~i~~~~~~~----~~~~  135 (276)
                      ++...++++..   ||.+.......    +.....           +.+           .......+++++    +..+
T Consensus       156 ~~~~~l~v~~~---dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (547)
T PF11715_consen  156 DSEANLVVSLQ---DGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTF  232 (547)
T ss_dssp             -SSSBEEEEES---SS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTE
T ss_pred             cCCCEEEEEEC---CCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCE
Confidence            36777788777   88888887654    211111           000           123345566665    6779


Q ss_pred             EEEeeCCCeEEEEeccCceeeeeE
Q 023822          136 FISGSLDRTVLLWDQRAEKCQGLL  159 (276)
Q Consensus       136 l~~~~~d~~i~iwd~~~~~~~~~~  159 (276)
                      +++.+.|+++++||+.+++++...
T Consensus       233 l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  233 LFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EEEEETTSEEEEEETTTTCEEEEE
T ss_pred             EEEEeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999999986554

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=92.60  E-value=4  Score=31.75  Aligned_cols=150  Identities=14%  Similarity=0.079  Sum_probs=86.3

Q ss_pred             ceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecc--cCcceEEEEeccCCCEEEEeeCCCeEEEEeccCcee
Q 023822           78 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKG--HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC  155 (276)
Q Consensus        78 ~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  155 (276)
                      -+..+.++  +++...+..   +.-+++.|+.+......+..  ..+.-.+  |.-.|++...+..|.-+.+.|+.....
T Consensus        88 l~~Dv~vs--e~yvyvad~---ssGL~IvDIS~P~sP~~~~~lnt~gyayg--v~vsGn~aYVadlddgfLivdvsdpss  160 (370)
T COG5276          88 LFADVRVS--EEYVYVADW---SSGLRIVDISTPDSPTLIGFLNTDGYAYG--VYVSGNYAYVADLDDGFLIVDVSDPSS  160 (370)
T ss_pred             hhheeEec--ccEEEEEcC---CCceEEEeccCCCCcceeccccCCceEEE--EEecCCEEEEeeccCcEEEEECCCCCC
Confidence            45566664  556666665   78899999987654333221  1122233  344788888888777788889876644


Q ss_pred             eeeE---eecC--CCeeEecCCCcEEEEe-eCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCc
Q 023822          156 QGLL---RVQG--RPAAAYDDQGLVFAVA-FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGH  229 (276)
Q Consensus       156 ~~~~---~~~~--~~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  229 (276)
                      ....   ....  ...++.+  |+...++ .|+-+.+-|+.....+.+. -... ....+.++..+++-.+++..  +--
T Consensus       161 P~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli-~~~n-~g~g~~sv~vsdnr~y~vvy--~eg  234 (370)
T COG5276         161 PQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLI-GSYN-TGPGTYSVSVSDNRAYLVVY--DEG  234 (370)
T ss_pred             ceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEE-EEEe-cCCceEEEEecCCeeEEEEc--ccc
Confidence            3322   1111  1233443  4444444 4888999999887653322 2211 12257777777776555544  333


Q ss_pred             EEEEECCCCcE
Q 023822          230 IHVLDSFRGTL  240 (276)
Q Consensus       230 i~i~d~~~~~~  240 (276)
                      +.+-|..+.+.
T Consensus       235 vlivd~s~~ss  245 (370)
T COG5276         235 VLIVDVSGPSS  245 (370)
T ss_pred             eEEEecCCCCC
Confidence            66666655543

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=92.48  E-value=1.1  Score=36.90  Aligned_cols=151  Identities=12%  Similarity=0.067  Sum_probs=83.1

Q ss_pred             ecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeee-E-eecC------CC-eeEecCCC-cEEEEeeCCeEEE
Q 023822          117 FKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL-L-RVQG------RP-AAAYDDQG-LVFAVAFGGYIRM  186 (276)
Q Consensus       117 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~-~~~~------~~-~~~~~~~~-~~l~~~~d~~i~~  186 (276)
                      +......+..+-..||++.+..-+. ..+.++++.+...... + ...+      +. .+..-..+ .+++...||-|.-
T Consensus       216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQ  294 (733)
T COG4590         216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQ  294 (733)
T ss_pred             cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceee
Confidence            4445566778888999998776665 6788888876543222 1 1111      11 11212233 4555555877766


Q ss_pred             E-ecccCCCCCee-eeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCc
Q 023822          187 F-DARKYEKGPFD-IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM  264 (276)
Q Consensus       187 ~-d~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  264 (276)
                      | |.+....+.+. +..+.-...++..+.=..+.+-+++-+..|.+.++.....+.+-.-.    .-..+.-+++||.+.
T Consensus       295 WFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~----~~~~~~~~~~Sp~~~  370 (733)
T COG4590         295 WFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER----AYQAPQLVAMSPNQA  370 (733)
T ss_pred             eeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh----hhcCcceeeeCcccc
Confidence            5 66554332221 11122222334333333344567777888888888754444332222    223566789999999


Q ss_pred             EEEEecCC
Q 023822          265 FVISGRVS  272 (276)
Q Consensus       265 ~l~~~~~d  272 (276)
                      +|++-...
T Consensus       371 ~Ll~e~~g  378 (733)
T COG4590         371 YLLSEDQG  378 (733)
T ss_pred             hheeecCC
Confidence            88775443

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=92.47  E-value=4.3  Score=31.84  Aligned_cols=165  Identities=13%  Similarity=0.146  Sum_probs=91.6

Q ss_pred             eEEEEEccCCeeeeeeeee------eeceEEEEEeccC-----CeEEEeccCCCCCceEEEEccCCceeeeeccc-----
Q 023822           57 SIRLYDVTAATCLKTINSK------KYGVDLVCFTSHP-----TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH-----  120 (276)
Q Consensus        57 ~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~-----~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~-----  120 (276)
                      .|.+||+.+++.++++..+      .+....+.+....     .++..+...  .+.|.++|+.+++.-+.+..+     
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~--~~glIV~dl~~~~s~Rv~~~~~~~~p  112 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSG--GPGLIVYDLATGKSWRVLHNSFSPDP  112 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETT--TCEEEEEETTTTEEEEEETCGCTTS-
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCC--cCcEEEEEccCCcEEEEecCCcceec
Confidence            7889999999988887543      3457778887633     244444432  568999999988755443321     


Q ss_pred             --------------CcceEEEEecc---CCCEEEEeeCCCeEEEEeccC-----c---------eeeeeE-e-ecCCCee
Q 023822          121 --------------HDRVVSLSLCS---SKDCFISGSLDRTVLLWDQRA-----E---------KCQGLL-R-VQGRPAA  167 (276)
Q Consensus       121 --------------~~~i~~~~~~~---~~~~l~~~~~d~~i~iwd~~~-----~---------~~~~~~-~-~~~~~~~  167 (276)
                                    ...+..++.+|   ++++|.-....+ -++|.+.+     .         ..++.+ . ......+
T Consensus       113 ~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~  191 (287)
T PF03022_consen  113 DAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGM  191 (287)
T ss_dssp             SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEE
T ss_pred             cccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceE
Confidence                          12255556554   555555544332 12333221     1         011122 1 1234578


Q ss_pred             EecCCCcEEEEee-CCeEEEEecccCCCC-CeeeeeecCC-CCCceEEEECC--CCcEEEEe
Q 023822          168 AYDDQGLVFAVAF-GGYIRMFDARKYEKG-PFDIFSVGGD-ISDANVVKFSN--DGRLMLLT  224 (276)
Q Consensus       168 ~~~~~~~~l~~~~-d~~i~~~d~~~~~~~-~~~~~~~~~~-~~~i~~~~~~~--~~~~l~~~  224 (276)
                      +++++|.++.+-- .+.|..|+..+.-.. ...+...... -..+..+.+.+  +|.+.+..
T Consensus       192 ~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  192 AIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             EEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             EECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence            8899998887776 799999998863211 2222222222 45678889988  76655544

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.45  E-value=7.2  Score=34.43  Aligned_cols=89  Identities=12%  Similarity=0.170  Sum_probs=50.3

Q ss_pred             CCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeee-----eEeecCCCeeEecCCCc
Q 023822          100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG-----LLRVQGRPAAAYDDQGL  174 (276)
Q Consensus       100 d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~  174 (276)
                      ...|+||++. |..+..+.-....+-.+.|+.+. .|+....+|++++|++-......     ......+..+.+..+|-
T Consensus        63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GV  140 (829)
T KOG2280|consen   63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGV  140 (829)
T ss_pred             ceeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCce
Confidence            4568888864 45444443334478889998665 46677889999999976433222     11222333444444554


Q ss_pred             EEEEeeCCeEEEEecc
Q 023822          175 VFAVAFGGYIRMFDAR  190 (276)
Q Consensus       175 ~l~~~~d~~i~~~d~~  190 (276)
                      .+.+.++.-+.+-+..
T Consensus       141 avlt~~g~v~~i~~~~  156 (829)
T KOG2280|consen  141 AVLTVSGQVILINGVE  156 (829)
T ss_pred             EEEecCCcEEEEcCCC
Confidence            4444433444444433

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.40  E-value=9.9  Score=35.88  Aligned_cols=166  Identities=12%  Similarity=0.160  Sum_probs=95.4

Q ss_pred             eeehHHHhhccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEE--------e
Q 023822           14 LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCF--------T   85 (276)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~--------~   85 (276)
                      +.++++.+..+.       |...=..+-+-|.=+..-. +-|+.+.+|+.+++.....+.+....|..+..        .
T Consensus        65 ~~IP~el~eq~~-------~~~~~~~mGiFpeI~RaWi-TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv  136 (1311)
T KOG1900|consen   65 VNIPDELLEQFS-------NIECKTDMGIFPEIGRAWI-TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFV  136 (1311)
T ss_pred             ccCCHHHHHHhc-------CcceeeeeccchhhcceEE-EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcch
Confidence            455555554444       2222233444554333322 35788999999998877777776666665543        3


Q ss_pred             ccCCeEEEeccCCCCCceEEEEccCCce---e------eeecccCcceEEEEeccCCCEEEEeeCCCeEEEEecc----C
Q 023822           86 SHPTTVIYSSKNGWDESLRLLSLHDNKY---L------RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR----A  152 (276)
Q Consensus        86 ~~~~~l~~~~~~~~d~~i~~~d~~~~~~---~------~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~----~  152 (276)
                      |.=+++++.+.   --.|.++-+.-.+.   .      .++......|.++....+|+.|++| .||  .+|.+-    .
T Consensus       137 ~~IqhlLvvaT---~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~  210 (1311)
T KOG1900|consen  137 PEIQHLLVVAT---PVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAED  210 (1311)
T ss_pred             hhhheeEEecc---cceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccC
Confidence            33345555555   56666665432211   1      1122234568888877788766655 455  445432    1


Q ss_pred             c----eee-------------eeE------eecCCCeeEecCCCcEEEEee-CCeEEEEecccCC
Q 023822          153 E----KCQ-------------GLL------RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYE  193 (276)
Q Consensus       153 ~----~~~-------------~~~------~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~  193 (276)
                      +    ++.             ..+      +..++..+.++....++.+-+ .+.|.+||+....
T Consensus       211 gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G  275 (1311)
T KOG1900|consen  211 GWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNG  275 (1311)
T ss_pred             chhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCC
Confidence            1    010             001      234567788888777777666 7999999998743

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.39  E-value=6.1  Score=33.41  Aligned_cols=37  Identities=14%  Similarity=0.082  Sum_probs=28.2

Q ss_pred             CceEEEECCCC---cEEEEeecCCcEEEEECCCCcEEEEe
Q 023822          208 DANVVKFSNDG---RLMLLTTMEGHIHVLDSFRGTLLSTY  244 (276)
Q Consensus       208 ~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~  244 (276)
                      .+..++|+|+.   ..|..-+.|+.||+||+.....+...
T Consensus       167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylq  206 (741)
T KOG4460|consen  167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQ  206 (741)
T ss_pred             eeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhcc
Confidence            46678899975   56777888999999998876655433

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=92.16  E-value=7.7  Score=34.06  Aligned_cols=156  Identities=11%  Similarity=0.094  Sum_probs=0.0

Q ss_pred             CCcEEEEEEcCCCCEEEEeecCCeEEEEEc---------cCCeeeeeeeeeeeceEEEEEeccCCeEEEecc-CCCCCce
Q 023822           34 NGRISSMDFHKSSSYLVTASDDESIRLYDV---------TAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK-NGWDESL  103 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~d~~i  103 (276)
                      .+.|-.+.|.++++.+++.-.+|.|.+||.         .....-..-..+..-|.....-....++++.+. .+..-..
T Consensus       129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y  208 (670)
T PF10395_consen  129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY  208 (670)
T ss_pred             ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE


Q ss_pred             EEEEc-cCCceeeeec---ccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeec-------CCCeeEecCC
Q 023822          104 RLLSL-HDNKYLRYFK---GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ-------GRPAAAYDDQ  172 (276)
Q Consensus       104 ~~~d~-~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~  172 (276)
                      +++.+ ........+.   .+........|+.+...|.-- .+++|.+|++...+..+.+...       .-..-...|.
T Consensus       209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s  287 (670)
T PF10395_consen  209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPPS  287 (670)
T ss_pred             EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEeecCC


Q ss_pred             CcEEEEeeCCeEEEEecc
Q 023822          173 GLVFAVAFGGYIRMFDAR  190 (276)
Q Consensus       173 ~~~l~~~~d~~i~~~d~~  190 (276)
                      ...+..+.++.|++.|+.
T Consensus       288 ~nRvLLs~~nkIyLld~~  305 (670)
T PF10395_consen  288 PNRVLLSVNNKIYLLDLK  305 (670)
T ss_pred             CCeEEEEcCCEEEEEeeh

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=92.05  E-value=4.5  Score=31.15  Aligned_cols=153  Identities=12%  Similarity=0.091  Sum_probs=97.5

Q ss_pred             ceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeee
Q 023822           78 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG  157 (276)
Q Consensus        78 ~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  157 (276)
                      .-..++-.||+..-+++..   .+.|--.|..+++....-.+....-..+..-||+..-++-+.. -|.-.|-++.+...
T Consensus        63 ap~dvapapdG~VWft~qg---~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~  138 (353)
T COG4257          63 APFDVAPAPDGAVWFTAQG---TGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR  138 (353)
T ss_pred             CccccccCCCCceEEecCc---cccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEE
Confidence            4556777788877777765   7788888888888766555555566778888888866554433 56666655544332


Q ss_pred             eE-----eecCCCeeEecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEE
Q 023822          158 LL-----RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHV  232 (276)
Q Consensus       158 ~~-----~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  232 (276)
                      .-     .........|++.|++-.++..|.---.|...   ..+.++... .....+.|+..|+|...++.-.++.|-.
T Consensus       139 f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~---~~i~vfpaP-qG~gpyGi~atpdGsvwyaslagnaiar  214 (353)
T COG4257         139 FPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPAR---NVISVFPAP-QGGGPYGICATPDGSVWYASLAGNAIAR  214 (353)
T ss_pred             eecccccCCCcccceeeCCCccEEEeeccccceecCccc---CceeeeccC-CCCCCcceEECCCCcEEEEeccccceEE
Confidence            21     12234578899999887777643322222222   112222222 3345677899999998887777778888


Q ss_pred             EECCCC
Q 023822          233 LDSFRG  238 (276)
Q Consensus       233 ~d~~~~  238 (276)
                      .|..++
T Consensus       215 idp~~~  220 (353)
T COG4257         215 IDPFAG  220 (353)
T ss_pred             cccccC
Confidence            887766

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=92.03  E-value=6.6  Score=32.99  Aligned_cols=107  Identities=9%  Similarity=0.031  Sum_probs=60.8

Q ss_pred             CCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCee--eeeee-----eeeeceEEEEEeccC------CeEEEeccC--
Q 023822           33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATC--LKTIN-----SKKYGVDLVCFTSHP------TTVIYSSKN--   97 (276)
Q Consensus        33 h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~-----~~~~~v~~~~~~~~~------~~l~~~~~~--   97 (276)
                      .-..-+.|+|.||+++|++--..|.|++++..++..  +..+.     ........++++|+-      .+|.+....  
T Consensus        28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~  107 (454)
T TIGR03606        28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN  107 (454)
T ss_pred             CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence            345678899999998777765469999998654432  21111     124668899999874      344444210  


Q ss_pred             C-----CCCceEEEEccCC--c---eeeeec------ccCcceEEEEeccCCCEEEEeeC
Q 023822           98 G-----WDESLRLLSLHDN--K---YLRYFK------GHHDRVVSLSLCSSKDCFISGSL  141 (276)
Q Consensus        98 ~-----~d~~i~~~d~~~~--~---~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~  141 (276)
                      +     ....|.-|.+...  .   ....+.      .|.  -..|.|.||+.++++.+.
T Consensus       108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~GD  165 (454)
T TIGR03606       108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIGE  165 (454)
T ss_pred             CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEECC
Confidence            0     0234444544321  1   111121      233  346889999986665544

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=91.97  E-value=6.5  Score=34.89  Aligned_cols=68  Identities=18%  Similarity=0.220  Sum_probs=42.7

Q ss_pred             CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEE
Q 023822           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS  107 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d  107 (276)
                      ..-++++.-+|.++.++.+..||.|++|+....+....... ..+-..+.|...|  ++++..   |..+.-|.
T Consensus        14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~-~~p~~nlv~tnhg--l~~~ts---drr~la~~   81 (1636)
T KOG3616|consen   14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEE-AKPKENLVFTNHG--LVTATS---DRRALAWK   81 (1636)
T ss_pred             cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhh-cCCccceeeeccc--eEEEec---cchhheee
Confidence            34567788889999999999999999999865443222211 1123344554333  444444   66666665

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=91.41  E-value=2.5  Score=36.58  Aligned_cols=71  Identities=20%  Similarity=0.222  Sum_probs=43.5

Q ss_pred             CCCCEEEEeecCCeEEEEEccC----Ceeeeee--ee--------------------eeeceEEEEEec----cCCeEEE
Q 023822           44 KSSSYLVTASDDESIRLYDVTA----ATCLKTI--NS--------------------KKYGVDLVCFTS----HPTTVIY   93 (276)
Q Consensus        44 ~~~~~l~~~~~d~~i~iwd~~~----~~~~~~~--~~--------------------~~~~v~~~~~~~----~~~~l~~   93 (276)
                      ++...|+.+..||.+.......    +......  ..                    ....+..+++.+    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3667888888999888877654    2111111  00                    122345556655    6778888


Q ss_pred             eccCCCCCceEEEEccCCceeeee
Q 023822           94 SSKNGWDESLRLLSLHDNKYLRYF  117 (276)
Q Consensus        94 ~~~~~~d~~i~~~d~~~~~~~~~~  117 (276)
                      .+.   |+.+++||+.+++++.+.
T Consensus       236 l~~---D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSR---DHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EET---TSEEEEEETTTTCEEEEE
T ss_pred             EeC---CCeEEEEECCCCeEEEEe
Confidence            888   999999999999986554

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PLN02153 epithiospecifier protein

Probab=90.95  E-value=7.2  Score=31.40  Aligned_cols=111  Identities=8%  Similarity=0.115  Sum_probs=52.3

Q ss_pred             CCCEEEEeecC-------CeEEEEEccCCeeeeeeee---eeece-EEEEEeccCCeEEEeccCC--CCCceEEEEccCC
Q 023822           45 SSSYLVTASDD-------ESIRLYDVTAATCLKTINS---KKYGV-DLVCFTSHPTTVIYSSKNG--WDESLRLLSLHDN  111 (276)
Q Consensus        45 ~~~~l~~~~~d-------~~i~iwd~~~~~~~~~~~~---~~~~v-~~~~~~~~~~~l~~~~~~~--~d~~i~~~d~~~~  111 (276)
                      ++.+++.|+.+       ..+.+||+.+.+-...-..   ..... ......-+++.++.|+..+  .-..+.+||+.+.
T Consensus        32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~  111 (341)
T PLN02153         32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKN  111 (341)
T ss_pred             CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCC
Confidence            35566666653       3577888876543221110   01000 1111222556666666421  1236788888765


Q ss_pred             ceee--eecc---cCcceEEEEeccCCCEEEEeeCC-----------CeEEEEeccCcee
Q 023822          112 KYLR--YFKG---HHDRVVSLSLCSSKDCFISGSLD-----------RTVLLWDQRAEKC  155 (276)
Q Consensus       112 ~~~~--~~~~---~~~~i~~~~~~~~~~~l~~~~~d-----------~~i~iwd~~~~~~  155 (276)
                      +-..  .+..   ........+..-++++++.|+.+           ..+.+||.++.+-
T Consensus       112 ~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W  171 (341)
T PLN02153        112 EWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKW  171 (341)
T ss_pred             EEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeE
Confidence            4321  1110   11111111122356677777753           2477888877643

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=90.69  E-value=1.5  Score=32.22  Aligned_cols=50  Identities=16%  Similarity=0.286  Sum_probs=37.3

Q ss_pred             cEEEEeecCCcEEEEECC--CCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCC
Q 023822          219 RLMLLTTMEGHIHVLDSF--RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVS  272 (276)
Q Consensus       219 ~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  272 (276)
                      ..|+.+...+.|.+|++.  ..+.+.+|.    .-+.|..+.++..|+||++--++
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~----Tv~~V~~l~y~~~GDYlvTlE~k   80 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFS----TVGRVLQLVYSEAGDYLVTLEEK   80 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEc----chhheeEEEeccccceEEEEEee
Confidence            344444666789999987  445566666    45889999999999999986443

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=90.57  E-value=7.7  Score=31.08  Aligned_cols=99  Identities=15%  Similarity=0.184  Sum_probs=59.2

Q ss_pred             eEEEEeccCCCEEEEeeCC------CeEEEEeccCceeeeeEe-----------------ecCCCeeEecCCCcEEEEee
Q 023822          124 VVSLSLCSSKDCFISGSLD------RTVLLWDQRAEKCQGLLR-----------------VQGRPAAAYDDQGLVFAVAF  180 (276)
Q Consensus       124 i~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~l~~~~  180 (276)
                      .-+|++.+++.++++.-.+      ..|..++.. ++....+.                 ..+...++++|+++.|.+..
T Consensus        87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~  165 (326)
T PF13449_consen   87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM  165 (326)
T ss_pred             hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence            3478887788888777777      789999876 44443331                 11233799999998444333


Q ss_pred             ------CC--e-------EEEE--ecccCC-CCCeeeeeecC-----CCCCceEEEECCCCcEEEE
Q 023822          181 ------GG--Y-------IRMF--DARKYE-KGPFDIFSVGG-----DISDANVVKFSNDGRLMLL  223 (276)
Q Consensus       181 ------d~--~-------i~~~--d~~~~~-~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~  223 (276)
                            |+  .       ++++  |..+.. ......+.+..     ....+..+.+-+++++|+.
T Consensus       166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  166 ESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             CccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence                  22  1       4444  444311 11122333332     4567889999999987665

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=90.15  E-value=8.3  Score=30.78  Aligned_cols=105  Identities=10%  Similarity=0.028  Sum_probs=50.0

Q ss_pred             cCCeEEEeccCCC--CCceEEEEccCCcee---eeecccCcce--EEEEeccCCCEEEEeeC-----CCeEEEEeccCce
Q 023822           87 HPTTVIYSSKNGW--DESLRLLSLHDNKYL---RYFKGHHDRV--VSLSLCSSKDCFISGSL-----DRTVLLWDQRAEK  154 (276)
Q Consensus        87 ~~~~l~~~~~~~~--d~~i~~~d~~~~~~~---~~~~~~~~~i--~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~  154 (276)
                      ++..++.++..+.  -..+..+|+.+.+..   ..+..-..+.  .+++. -++++++.|+.     ...+..||+.+.+
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE  150 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence            5556666664211  135667777665431   1221111111  12222 25666677764     2368888988765


Q ss_pred             eeee--Eee-cCCCeeEecCCCcEEEEee-CC----eEEEEecccC
Q 023822          155 CQGL--LRV-QGRPAAAYDDQGLVFAVAF-GG----YIRMFDARKY  192 (276)
Q Consensus       155 ~~~~--~~~-~~~~~~~~~~~~~~l~~~~-d~----~i~~~d~~~~  192 (276)
                      -...  +.. ......+...++++++.+. ++    .+..||+++.
T Consensus       151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~  196 (323)
T TIGR03548       151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN  196 (323)
T ss_pred             eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence            3322  111 1112223334556665554 32    3567887763

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=90.07  E-value=3.2  Score=25.91  Aligned_cols=42  Identities=14%  Similarity=0.137  Sum_probs=29.0

Q ss_pred             eecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEe
Q 023822          224 TTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG  269 (276)
Q Consensus       224 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  269 (276)
                      +..+|.+.-||..+++..-.+.    .-...+.+++++|+.+|+.+
T Consensus        33 ~~~~GRll~ydp~t~~~~vl~~----~L~fpNGVals~d~~~vlv~   74 (89)
T PF03088_consen   33 GRPTGRLLRYDPSTKETTVLLD----GLYFPNGVALSPDESFVLVA   74 (89)
T ss_dssp             T---EEEEEEETTTTEEEEEEE----EESSEEEEEE-TTSSEEEEE
T ss_pred             CCCCcCEEEEECCCCeEEEehh----CCCccCeEEEcCCCCEEEEE
Confidence            4567889999998887655555    23467889999999987765

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PLN02153 epithiospecifier protein

Probab=89.89  E-value=9.1  Score=30.84  Aligned_cols=110  Identities=7%  Similarity=0.128  Sum_probs=51.9

Q ss_pred             CCCEEEEeecC-----CeEEEEEccCCeeee--eeee---eeeceEEEEEeccCCeEEEeccCCC--------CCceEEE
Q 023822           45 SSSYLVTASDD-----ESIRLYDVTAATCLK--TINS---KKYGVDLVCFTSHPTTVIYSSKNGW--------DESLRLL  106 (276)
Q Consensus        45 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~--~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~--------d~~i~~~  106 (276)
                      ++.+++.|+.+     ..+.+||..+.+-..  .+..   ........+...+++..+.++....        -..+.+|
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y  164 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY  164 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence            45666777643     257788887654322  1110   1111122222335566666664210        1257788


Q ss_pred             EccCCceeee--ec---ccCcceEEEEeccCCCEEEEeeCC-------------CeEEEEeccCceee
Q 023822          107 SLHDNKYLRY--FK---GHHDRVVSLSLCSSKDCFISGSLD-------------RTVLLWDQRAEKCQ  156 (276)
Q Consensus       107 d~~~~~~~~~--~~---~~~~~i~~~~~~~~~~~l~~~~~d-------------~~i~iwd~~~~~~~  156 (276)
                      |+.+.+-...  ..   ...... +++. -++++++.++.+             ..+.+||+.+.+-.
T Consensus       165 d~~~~~W~~l~~~~~~~~~r~~~-~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~  230 (341)
T PLN02153        165 NIADGKWVQLPDPGENFEKRGGA-GFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWT  230 (341)
T ss_pred             ECCCCeEeeCCCCCCCCCCCCcc-eEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEE
Confidence            8876543211  10   011111 2222 256666655432             35888998876544

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=89.85  E-value=3  Score=25.85  Aligned_cols=30  Identities=27%  Similarity=0.372  Sum_probs=24.1

Q ss_pred             CCceEEEECCCCcEEEEee-cCCcEEEEECC
Q 023822          207 SDANVVKFSNDGRLMLLTT-MEGHIHVLDSF  236 (276)
Q Consensus       207 ~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~  236 (276)
                      ...+.|.++|++++|++++ ..+.|++|...
T Consensus        54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~   84 (86)
T PF01731_consen   54 SFANGIAISPDKKYLYVASSLAHSIHVYKRH   84 (86)
T ss_pred             CCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence            4567899999999888776 46789999864

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=89.55  E-value=10  Score=31.04  Aligned_cols=40  Identities=13%  Similarity=0.067  Sum_probs=19.7

Q ss_pred             EEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCC
Q 023822          230 IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVS  272 (276)
Q Consensus       230 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  272 (276)
                      +.+||..+.+-...-.. +.....  ..+..-++++++.|+..
T Consensus       314 ~e~yd~~~~~W~~~~~l-p~~r~~--~~av~~~~~iyv~GG~~  353 (376)
T PRK14131        314 DEIYALVNGKWQKVGEL-PQGLAY--GVSVSWNNGVLLIGGET  353 (376)
T ss_pred             hheEEecCCcccccCcC-CCCccc--eEEEEeCCEEEEEcCCC
Confidence            45788776654322111 111111  22344567788888764

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=89.03  E-value=1.9  Score=21.78  Aligned_cols=30  Identities=20%  Similarity=0.338  Sum_probs=19.5

Q ss_pred             cCCCcEEEEEEcCCCCEEEEee-cC--CeEEEE
Q 023822           32 DYNGRISSMDFHKSSSYLVTAS-DD--ESIRLY   61 (276)
Q Consensus        32 ~h~~~v~~~~~~~~~~~l~~~~-~d--~~i~iw   61 (276)
                      .....-....|+|||+.|+-++ .+  |...||
T Consensus         6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3455678899999999887655 34  555444

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=88.74  E-value=19  Score=32.89  Aligned_cols=114  Identities=7%  Similarity=0.129  Sum_probs=75.5

Q ss_pred             CcEEEEEEcC-CCCEEEEeecCCeEEEEEccCCe-----eeeeeeee----------eeceEEEEEeccCCeEEEeccCC
Q 023822           35 GRISSMDFHK-SSSYLVTASDDESIRLYDVTAAT-----CLKTINSK----------KYGVDLVCFTSHPTTVIYSSKNG   98 (276)
Q Consensus        35 ~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~----------~~~v~~~~~~~~~~~l~~~~~~~   98 (276)
                      .+...++|+| +...||.....|.-.||++....     ........          ...-..+.|.++...|+++.   
T Consensus       146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~---  222 (765)
T PF10214_consen  146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN---  222 (765)
T ss_pred             CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc---
Confidence            4677899999 56689999999999999992111     11111011          12334788988888888887   


Q ss_pred             CCCceEEEEccCCceee--eecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCc
Q 023822           99 WDESLRLLSLHDNKYLR--YFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAE  153 (276)
Q Consensus        99 ~d~~i~~~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~  153 (276)
                       ...+.++|+++.....  ........|.++.-+|... +++..+ ...|...|+...
T Consensus       223 -r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~~  278 (765)
T PF10214_consen  223 -RSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKSS  278 (765)
T ss_pred             -CCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccCC
Confidence             6889999998876533  1223456788888888632 232222 357888887763

These proteins are found in fungi.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=88.69  E-value=19  Score=32.87  Aligned_cols=156  Identities=13%  Similarity=0.061  Sum_probs=92.8

Q ss_pred             eeeeceEEEEEe---c----cCCeEEEeccCCCCCceEEEEccCC---------------ceeeeecc---cCcceEEEE
Q 023822           74 SKKYGVDLVCFT---S----HPTTVIYSSKNGWDESLRLLSLHDN---------------KYLRYFKG---HHDRVVSLS  128 (276)
Q Consensus        74 ~~~~~v~~~~~~---~----~~~~l~~~~~~~~d~~i~~~d~~~~---------------~~~~~~~~---~~~~i~~~~  128 (276)
                      ....+|..+.|.   .    ..+.|++-.    ...+.|+...-.               .++..+..   ...+..+++
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt----~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~  152 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVRT----ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVA  152 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEEc----CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEE
Confidence            345678888887   2    223555544    667777772211               12233321   233677899


Q ss_pred             eccC-CCEEEEeeCCCeEEEEeccCceee--eeE-----eecC----------CCeeEecCCCcEEEEeeCCeEEEEecc
Q 023822          129 LCSS-KDCFISGSLDRTVLLWDQRAEKCQ--GLL-----RVQG----------RPAAAYDDQGLVFAVAFGGYIRMFDAR  190 (276)
Q Consensus       129 ~~~~-~~~l~~~~~d~~i~iwd~~~~~~~--~~~-----~~~~----------~~~~~~~~~~~~l~~~~d~~i~~~d~~  190 (276)
                      |+|. .+.||.....|...|||+......  ..+     ..+.          -..+.|.++...|.++....+.++|++
T Consensus       153 FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~  232 (765)
T PF10214_consen  153 FNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFE  232 (765)
T ss_pred             eccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCceEEEECC
Confidence            9984 458999999999999999211110  011     0111          125778888888888888899999998


Q ss_pred             cCCCCCeeeeeecCCCCCceEEEECCC--CcEEEEeecCCcEEEEECCC
Q 023822          191 KYEKGPFDIFSVGGDISDANVVKFSND--GRLMLLTTMEGHIHVLDSFR  237 (276)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~  237 (276)
                      +......  .........|..+.-+|.  +..++..+  ..|...++.+
T Consensus       233 ~~~~~~~--l~~~~~~~~IlDv~~~~~~~~~~FiLTs--~eiiw~~~~~  277 (765)
T PF10214_consen  233 SNWQTEY--LVTAKTWSWILDVKRSPDNPSHVFILTS--KEIIWLDVKS  277 (765)
T ss_pred             CCCccch--hccCCChhheeeEEecCCccceEEEEec--CeEEEEEccC
Confidence            7654322  222334557888888876  33333222  3565666554

These proteins are found in fungi.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=88.67  E-value=2  Score=21.67  Aligned_cols=31  Identities=6%  Similarity=0.055  Sum_probs=19.5

Q ss_pred             eeceEEEEEeccCCeEEEeccCCCCCceEEE
Q 023822           76 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLL  106 (276)
Q Consensus        76 ~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~  106 (276)
                      ...-....|+|||+.|+.++.....|.-.||
T Consensus         8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3456778999999999988763101444444

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PLN02193 nitrile-specifier protein

Probab=88.61  E-value=14  Score=31.37  Aligned_cols=191  Identities=8%  Similarity=0.056  Sum_probs=87.1

Q ss_pred             CCEEEEeecC-------CeEEEEEccCCeeeeeeee---eee--ceEEEEEeccCCeEEEeccCC--CCCceEEEEccCC
Q 023822           46 SSYLVTASDD-------ESIRLYDVTAATCLKTINS---KKY--GVDLVCFTSHPTTVIYSSKNG--WDESLRLLSLHDN  111 (276)
Q Consensus        46 ~~~l~~~~~d-------~~i~iwd~~~~~~~~~~~~---~~~--~v~~~~~~~~~~~l~~~~~~~--~d~~i~~~d~~~~  111 (276)
                      +.+++.|+.+       ..+.+||+.+.+-.. +..   ...  ........-++...+.++..+  .-..+..||+.+.
T Consensus       176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~-~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~  254 (470)
T PLN02193        176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSI-SPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN  254 (470)
T ss_pred             CEEEEECCcCCCCCCeeCcEEEEECCCCEEEe-CCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC
Confidence            4555666643       247788887654332 111   000  111112222455566665421  1246888888775


Q ss_pred             ceeee--ec--ccCcceEEEEeccCCCEEEEeeCCC-----eEEEEeccCceeeeeEee-----cC-CCeeEecCCCcEE
Q 023822          112 KYLRY--FK--GHHDRVVSLSLCSSKDCFISGSLDR-----TVLLWDQRAEKCQGLLRV-----QG-RPAAAYDDQGLVF  176 (276)
Q Consensus       112 ~~~~~--~~--~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~-----~~-~~~~~~~~~~~~l  176 (276)
                      +-...  +.  .....-.+++ .-++++++.|+.++     .+..||+.+.+-...-..     .. ...++.. +++++
T Consensus       255 ~W~~l~~~~~~P~~R~~h~~~-~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~-~gkiy  332 (470)
T PLN02193        255 EWKLLTPVEEGPTPRSFHSMA-ADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVV-QGKVW  332 (470)
T ss_pred             EEEEcCcCCCCCCCccceEEE-EECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEE-CCcEE
Confidence            43221  10  0111111222 23566777776543     467788776653321110     00 1122222 44555


Q ss_pred             EEee-C----CeEEEEecccCCCCCeeeeeecCCC-CCceEEEECCCCcEEEEeecC--------------CcEEEEECC
Q 023822          177 AVAF-G----GYIRMFDARKYEKGPFDIFSVGGDI-SDANVVKFSNDGRLMLLTTME--------------GHIHVLDSF  236 (276)
Q Consensus       177 ~~~~-d----~~i~~~d~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d--------------g~i~i~d~~  236 (276)
                      +.+. +    ..+.+||+.+.+=  .........+ ......+..-++++++.|+..              ..+.+||+.
T Consensus       333 viGG~~g~~~~dv~~yD~~t~~W--~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~  410 (470)
T PLN02193        333 VVYGFNGCEVDDVHYYDPVQDKW--TQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTE  410 (470)
T ss_pred             EEECCCCCccCceEEEECCCCEE--EEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcC
Confidence            4443 3    5688999876431  1111110001 111111222356777777753              247889988


Q ss_pred             CCcEE
Q 023822          237 RGTLL  241 (276)
Q Consensus       237 ~~~~~  241 (276)
                      +.+-.
T Consensus       411 t~~W~  415 (470)
T PLN02193        411 TLQWE  415 (470)
T ss_pred             cCEEE
Confidence            77654

>smart00564 PQQ beta-propeller repeat

Probab=88.35  E-value=1.6  Score=20.93  Aligned_cols=25  Identities=28%  Similarity=0.510  Sum_probs=20.6

Q ss_pred             EEEEeecCCcEEEEECCCCcEEEEe
Q 023822          220 LMLLTTMEGHIHVLDSFRGTLLSTY  244 (276)
Q Consensus       220 ~l~~~~~dg~i~i~d~~~~~~~~~~  244 (276)
                      .+++++.+|.+..+|..+|+.+-.+
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEEc
Confidence            5777888999999999999887543

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=88.33  E-value=15  Score=31.31  Aligned_cols=169  Identities=12%  Similarity=0.030  Sum_probs=73.8

Q ss_pred             cCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCc---ceEEEEec
Q 023822           54 DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHD---RVVSLSLC  130 (276)
Q Consensus        54 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~---~i~~~~~~  130 (276)
                      ..+...+.|. +|.....+.........+...++|.+++..     ...+..+|+. |+.+..+.-...   .-..+...
T Consensus       126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~-----~~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l  198 (477)
T PF05935_consen  126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGS-----GNRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDEL  198 (477)
T ss_dssp             BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEE-----BTEEEEE-TT---EEEEEE--TTEE-B-S-EEE-
T ss_pred             CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEec-----CCceEEEcCC-CCEEEeeecCCcccccccccEEC
Confidence            3455666674 455544444332222225667777776654     5678888875 455444432221   12456778


Q ss_pred             cCCCEEEEeeCCCeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEeeCCeEEEEecccCCCCCee---------ee-
Q 023822          131 SSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFD---------IF-  200 (276)
Q Consensus       131 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~---------~~-  200 (276)
                      |+|++|+.+........     .......   .-..+.+++.|        ..+..||+...-.....         .. 
T Consensus       199 ~nGn~L~l~~~~~~~~~-----~~~~~~~---~D~Ivevd~tG--------~vv~~wd~~d~ld~~~~~~~~~~~~~~~~  262 (477)
T PF05935_consen  199 PNGNLLILASETKYVDE-----DKDVDTV---EDVIVEVDPTG--------EVVWEWDFFDHLDPYRDTVLKPYPYGDIS  262 (477)
T ss_dssp             TTS-EEEEEEETTEE-T-----S-EE------S-EEEEE-TTS---------EEEEEEGGGTS-TT--TTGGT--SSSSS
T ss_pred             CCCCEEEEEeecccccC-----CCCccEe---cCEEEEECCCC--------CEEEEEehHHhCCcccccccccccccccc
Confidence            99998887774222211     0000000   00112222222        34566766542100000         00 


Q ss_pred             --eecCCCCCceEEEECC-CCcEEEEeecCCcEEEEECCCCcEEEEee
Q 023822          201 --SVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGTLLSTYN  245 (276)
Q Consensus       201 --~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  245 (276)
                        .....-.-++++.+.+ ++.+++++-.-..|...|..+++....+.
T Consensus       263 ~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg  310 (477)
T PF05935_consen  263 GSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILG  310 (477)
T ss_dssp             -SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES
T ss_pred             cCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeC
Confidence              0011112478899988 55555555555588899988888877665

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=88.24  E-value=4.5  Score=25.24  Aligned_cols=42  Identities=19%  Similarity=0.128  Sum_probs=30.2

Q ss_pred             eeCCCeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee
Q 023822          139 GSLDRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF  180 (276)
Q Consensus       139 ~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~  180 (276)
                      +..+|.+..||..+++....+ ...-.+.+++++++.++..+.
T Consensus        33 ~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~E   75 (89)
T PF03088_consen   33 GRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAE   75 (89)
T ss_dssp             T---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEE
T ss_pred             CCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEe
Confidence            345688999999998765555 555667899999999888877

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=88.17  E-value=22  Score=33.02  Aligned_cols=157  Identities=13%  Similarity=0.145  Sum_probs=85.9

Q ss_pred             CCCceEEEEccCCceeeeecccC----cceEEEEeccCCC--EEEEeeC-----------CCeEEEEecc-CceeeeeEe
Q 023822           99 WDESLRLLSLHDNKYLRYFKGHH----DRVVSLSLCSSKD--CFISGSL-----------DRTVLLWDQR-AEKCQGLLR  160 (276)
Q Consensus        99 ~d~~i~~~d~~~~~~~~~~~~~~----~~i~~~~~~~~~~--~l~~~~~-----------d~~i~iwd~~-~~~~~~~~~  160 (276)
                      |-..|++.|..+++.+..+.-..    -.+..+.|+....  +++++..           +|.++.|++- .++.+..++
T Consensus       851 w~s~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh  930 (1205)
T KOG1898|consen  851 WVSSIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLH  930 (1205)
T ss_pred             ccceEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeee
Confidence            34468888888877665543222    2455666665333  3333332           3457777654 344344444


Q ss_pred             ecCCC--eeEecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEEC-CC
Q 023822          161 VQGRP--AAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDS-FR  237 (276)
Q Consensus       161 ~~~~~--~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~-~~  237 (276)
                      ...+.  ..++.|-...+.++....+++||+...+.  ........-+..|+.+.+  .+..+++|...-.++++.. +.
T Consensus       931 ~T~~~~~v~Ai~~f~~~~LagvG~~l~~YdlG~K~l--LRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~ 1006 (1205)
T KOG1898|consen  931 KTEIPGPVGAICPFQGRVLAGVGRFLRLYDLGKKKL--LRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRRE 1006 (1205)
T ss_pred             ccCCCccceEEeccCCEEEEecccEEEEeeCChHHH--HhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecC
Confidence            44433  56788877788888899999999976432  111112222345566665  3456777765545544332 23


Q ss_pred             CcEEEEeecCCCCCCceEEEEEC
Q 023822          238 GTLLSTYNVKPVSRNSTLEASFS  260 (276)
Q Consensus       238 ~~~~~~~~~~~~~~~~v~~~~~s  260 (276)
                      ++.+..+...+ ....|+.+.+-
T Consensus      1007 ~n~l~~fadD~-~pR~Vt~~~~l 1028 (1205)
T KOG1898|consen 1007 DNQLIVFADDP-VPRHVTALELL 1028 (1205)
T ss_pred             CCeEEEEeCCC-ccceeeEEEEe
Confidence            44444554332 33455555443

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=87.65  E-value=12  Score=29.44  Aligned_cols=191  Identities=12%  Similarity=0.056  Sum_probs=99.6

Q ss_pred             eEEEEEeccCCeEEEeccCCCCCceEEEEcc------CC-ceeeeecc-----cCcceEEEEeccCC------------C
Q 023822           79 VDLVCFTSHPTTVIYSSKNGWDESLRLLSLH------DN-KYLRYFKG-----HHDRVVSLSLCSSK------------D  134 (276)
Q Consensus        79 v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~------~~-~~~~~~~~-----~~~~i~~~~~~~~~------------~  134 (276)
                      -+.++++|.+..-++...   .+...+||..      .. ..+.++..     .....+.+.|+...            .
T Consensus        25 ~WGia~~p~~~~WVadng---T~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a  101 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTG---TGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS  101 (336)
T ss_pred             cceeEecCCCCEEEecCC---cceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence            568899998866665554   7889999986      11 22223331     12346667776422            2


Q ss_pred             EEEEeeCCCeEEEEeccCcee-----eeeEee---cC-CCeeEec--CCCcEEEEee--CCeEEEEecccCCCCCeeeee
Q 023822          135 CFISGSLDRTVLLWDQRAEKC-----QGLLRV---QG-RPAAAYD--DQGLVFAVAF--GGYIRMFDARKYEKGPFDIFS  201 (276)
Q Consensus       135 ~l~~~~~d~~i~iwd~~~~~~-----~~~~~~---~~-~~~~~~~--~~~~~l~~~~--d~~i~~~d~~~~~~~~~~~~~  201 (276)
                      .++.+++||+|.-|...-...     ...+..   .. ...+++.  ..+.+|....  .++|.+||-.-.+.....-+.
T Consensus       102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~  181 (336)
T TIGR03118       102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI  181 (336)
T ss_pred             eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence            368889999999998533222     111211   11 1234444  3345555554  799999986543210000000


Q ss_pred             ---ecCCCCC-----------ceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECC------
Q 023822          202 ---VGGDISD-----------ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP------  261 (276)
Q Consensus       202 ---~~~~~~~-----------i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~------  261 (276)
                         +...-.+           |+-..-.++++.=+.|..-|.|-+||+ +|+.++++... +.-...+.++..|      
T Consensus       182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~-g~LNaPWG~a~APa~FG~~  259 (336)
T TIGR03118       182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASS-GRLNAPWGLAIAPESFGSL  259 (336)
T ss_pred             CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccC-CcccCCceeeeChhhhCCC
Confidence               0010011           111111222222233344578999995 78888888532 2344556666654      


Q ss_pred             CCcEEEEecCCCC
Q 023822          262 EGMFVISGRVSPF  274 (276)
Q Consensus       262 ~g~~l~~~~~dg~  274 (276)
                      .|.+|+---.||+
T Consensus       260 sg~lLVGNFGDG~  272 (336)
T TIGR03118       260 SGALLVGNFGDGT  272 (336)
T ss_pred             CCCeEEeecCCce
Confidence            3455554444554

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=87.59  E-value=14  Score=30.01  Aligned_cols=140  Identities=12%  Similarity=0.038  Sum_probs=0.0

Q ss_pred             EEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEee----------cCCCeeEecCCC-cEEEEeeCCeEEEEecccCCC
Q 023822          126 SLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV----------QGRPAAAYDDQG-LVFAVAFGGYIRMFDARKYEK  194 (276)
Q Consensus       126 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----------~~~~~~~~~~~~-~~l~~~~d~~i~~~d~~~~~~  194 (276)
                      ++..+.+.....++..+|-|..-+............          ...-.++|...+ .++++-.---+...+...+..
T Consensus        69 ~~~v~dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a  148 (376)
T KOG1520|consen   69 YTGVVDGRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLA  148 (376)
T ss_pred             eEEEECCceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEEEecceeeEEECCCCCcc


Q ss_pred             CCeeeeeecCCCCCceEEEECCCCc-----------------EEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEE
Q 023822          195 GPFDIFSVGGDISDANVVKFSNDGR-----------------LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA  257 (276)
Q Consensus       195 ~~~~~~~~~~~~~~i~~~~~~~~~~-----------------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~  257 (276)
                      ...........-.-.+.+..+++|.                 .++.+..+|++.-||..+....-.+.    .-.-.+.+
T Consensus       149 ~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld----~L~F~NGl  224 (376)
T KOG1520|consen  149 ELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLD----GLYFPNGL  224 (376)
T ss_pred             eeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhhh----cccccccc


Q ss_pred             EECCCCcEEEEe
Q 023822          258 SFSPEGMFVISG  269 (276)
Q Consensus       258 ~~s~~g~~l~~~  269 (276)
                      +.|||+.+++.+
T Consensus       225 aLS~d~sfvl~~  236 (376)
T KOG1520|consen  225 ALSPDGSFVLVA  236 (376)
T ss_pred             cCCCCCCEEEEE

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	276
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		8e-17
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		8e-17
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-16
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-16
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-16
2h9l_A	329	Wdr5delta23 Length = 329		2e-16
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-16
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-16
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-16
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-16
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-16
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-16
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-16
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-16
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-16
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		1e-15
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		1e-15
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		4e-07
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		5e-07
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		5e-07
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		6e-07
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		6e-07
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		6e-07
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-06
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		6e-06
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		2e-05
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		4e-05
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		5e-05
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		5e-05
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		5e-05
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		5e-05
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		7e-05
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		1e-04
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-04
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-04
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		1e-04
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		4e-04
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		6e-04

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 84.0 bits (206), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 120/257 (46%), Gaps = 11/257 (4%)
Query: 17  SEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK 76
           SE +  +  +  +   +   +SS+ F  +  +L ++S D+ I+++        KTI+  K
Sbjct: 9   SEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 68
Query: 77  YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF 136
            G+  V ++S    ++ +S    D++L++  +   K L+  KGH + V   +     +  
Sbjct: 69  LGISDVAWSSDSNLLVSASD---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 137 ISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYE 193
           +SGS D +V +WD +  KC   L     P +A     D  L+ + ++ G  R++D     
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---A 182
Query: 194 KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS 253
            G      +  D    + VKFS +G+ +L  T++  + + D  +G  L TY     +   
Sbjct: 183 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKY 241
Query: 254 TLEASFS-PEGMFVISG 269
            + A+FS   G +++SG
Sbjct: 242 CIFANFSVTGGKWIVSG 258

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 84.0 bits (206), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 120/257 (46%), Gaps = 11/257 (4%)
Query: 17  SEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK 76
           SE +  +  +  +   +   +SS+ F  +  +L ++S D+ I+++        KTI+  K
Sbjct: 9   SEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 68
Query: 77  YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF 136
            G+  V ++S    ++ +S    D++L++  +   K L+  KGH + V   +     +  
Sbjct: 69  LGISDVAWSSDSNLLVSASD---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 137 ISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYE 193
           +SGS D +V +WD +  KC   L     P +A     D  L+ + ++ G  R++D     
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---A 182
Query: 194 KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS 253
            G      +  D    + VKFS +G+ +L  T++  + + D  +G  L TY     +   
Sbjct: 183 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKY 241
Query: 254 TLEASFS-PEGMFVISG 269
            + A+FS   G +++SG
Sbjct: 242 CIFANFSVTGGKWIVSG 258

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 119/257 (46%), Gaps = 11/257 (4%)
Query: 17  SEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK 76
           SE +  +  +  +   +   +SS+ F  +  +L  +S D+ I+++        KTI+  K
Sbjct: 9   SEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHK 68
Query: 77  YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF 136
            G+  V ++S    ++ +S    D++L++  +   K L+  KGH + V   +     +  
Sbjct: 69  LGISDVAWSSDSNLLVSASD---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 137 ISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYE 193
           +SGS D +V +WD +  KC   L     P +A     D  L+ + ++ G  R++D     
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---A 182
Query: 194 KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS 253
            G      +  D    + VKFS +G+ +L  T++  + + D  +G  L TY     +   
Sbjct: 183 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKY 241
Query: 254 TLEASFS-PEGMFVISG 269
            + A+FS   G +++SG
Sbjct: 242 CIFANFSVTGGKWIVSG 258

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 101/211 (47%), Gaps = 9/211 (4%)
Query: 37  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
           +SS+ F  +  +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S 
Sbjct: 50  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 109
Query: 97  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
              D++L++  +   K L+  KGH + V   +     +  +SGS D +V +WD +  KC 
Sbjct: 110 ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 166
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
             L     P +A     D  L+ + ++ G  R++D      G      +  D    + VK
Sbjct: 167 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 223
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY 244
           FS +G+ +L  T++  + + D  +G  L TY
Sbjct: 224 FSPNGKYILAATLDNTLKLWDYSKGKCLKTY 254

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 101/211 (47%), Gaps = 9/211 (4%)
Query: 37  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
           +SS+ F  +  +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S 
Sbjct: 48  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 107
Query: 97  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
              D++L++  +   K L+  KGH + V   +     +  +SGS D +V +WD +  KC 
Sbjct: 108 ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 164
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
             L     P +A     D  L+ + ++ G  R++D      G      +  D    + VK
Sbjct: 165 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 221
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY 244
           FS +G+ +L  T++  + + D  +G  L TY
Sbjct: 222 FSPNGKYILAATLDNTLKLWDYSKGKCLKTY 252

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 113/237 (47%), Gaps = 11/237 (4%)
Query: 37  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
           +SS+ F  +  +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S 
Sbjct: 43  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 102
Query: 97  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
              D++L++  +   K L+  KGH + V   +     +  +SGS D +V +WD +  KC 
Sbjct: 103 ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 159
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
             L     P +A     D  L+ + ++ G  R++D      G      +  D    + VK
Sbjct: 160 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 216
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS-PEGMFVISG 269
           FS +G+ +L  T++  + + D  +G  L TY     +    + A+FS   G +++SG
Sbjct: 217 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSG 272

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 101/211 (47%), Gaps = 9/211 (4%)
Query: 37  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
           +SS+ F  +  +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S 
Sbjct: 32  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 91
Query: 97  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
              D++L++  +   K L+  KGH + V   +     +  +SGS D +V +WD +  KC 
Sbjct: 92  ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 148
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
             L     P +A     D  L+ + ++ G  R++D      G      +  D    + VK
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 205
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY 244
           FS +G+ +L  T++  + + D  +G  L TY
Sbjct: 206 FSPNGKYILAATLDNTLKLWDYSKGKCLKTY 236

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 101/211 (47%), Gaps = 9/211 (4%)
Query: 37  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
           +SS+ F  +  +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S 
Sbjct: 32  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 91
Query: 97  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
              D++L++  +   K L+  KGH + V   +     +  +SGS D +V +WD +  KC 
Sbjct: 92  ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 148
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
             L     P +A     D  L+ + ++ G  R++D      G      +  D    + VK
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 205
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY 244
           FS +G+ +L  T++  + + D  +G  L TY
Sbjct: 206 FSPNGKYILAATLDNTLKLWDYSKGKCLKTY 236

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 113/237 (47%), Gaps = 11/237 (4%)
Query: 37  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
           +SS+ F  +  +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S 
Sbjct: 32  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 91
Query: 97  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
              D++L++  +   K L+  KGH + V   +     +  +SGS D +V +WD +  KC 
Sbjct: 92  ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 148
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
             L     P +A     D  L+ + ++ G  R++D      G      +  D    + VK
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 205
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS-PEGMFVISG 269
           FS +G+ +L  T++  + + D  +G  L TY     +    + A+FS   G +++SG
Sbjct: 206 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSG 261

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 113/237 (47%), Gaps = 11/237 (4%)
Query: 37  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
           +SS+ F  +  +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S 
Sbjct: 26  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 85
Query: 97  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
              D++L++  +   K L+  KGH + V   +     +  +SGS D +V +WD +  KC 
Sbjct: 86  ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 142
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
             L     P +A     D  L+ + ++ G  R++D      G      +  D    + VK
Sbjct: 143 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 199
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS-PEGMFVISG 269
           FS +G+ +L  T++  + + D  +G  L TY     +    + A+FS   G +++SG
Sbjct: 200 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSG 255

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 113/237 (47%), Gaps = 11/237 (4%)
Query: 37  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
           +SS+ F  +  +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S 
Sbjct: 22  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 81
Query: 97  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
              D++L++  +   K L+  KGH + V   +     +  +SGS D +V +WD +  KC 
Sbjct: 82  ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 138
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
             L     P +A     D  L+ + ++ G  R++D      G      +  D    + VK
Sbjct: 139 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 195
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS-PEGMFVISG 269
           FS +G+ +L  T++  + + D  +G  L TY     +    + A+FS   G +++SG
Sbjct: 196 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSG 251

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 119/257 (46%), Gaps = 11/257 (4%)
Query: 17  SEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK 76
           S  +  +  +  +   +   +SS+ F  +  +L ++S D+ I+++        KTI+  K
Sbjct: 5   STPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 64
Query: 77  YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF 136
            G+  V ++S    ++ +S    D++L++  +   K L+  KGH + V   +     +  
Sbjct: 65  LGISDVAWSSDSNLLVSASD---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 121
Query: 137 ISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYE 193
           +SGS D +V +WD +  KC   L     P +A     D  L+ + ++ G  R++D     
Sbjct: 122 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---A 178
Query: 194 KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS 253
            G      +  D    + VKFS +G+ +L  T++  + + D  +G  L TY     +   
Sbjct: 179 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKY 237
Query: 254 TLEASFS-PEGMFVISG 269
            + A+FS   G +++SG
Sbjct: 238 CIFANFSVTGGKWIVSG 254

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 113/237 (47%), Gaps = 11/237 (4%)
Query: 37  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
           +SS+ F  +  +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S 
Sbjct: 26  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 85
Query: 97  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
              D++L++  +   K L+  KGH + V   +     +  +SGS D +V +WD +  KC 
Sbjct: 86  ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 142
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
             L     P +A     D  L+ + ++ G  R++D      G      +  D    + VK
Sbjct: 143 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 199
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS-PEGMFVISG 269
           FS +G+ +L  T++  + + D  +G  L TY     +    + A+FS   G +++SG
Sbjct: 200 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSG 255

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 113/237 (47%), Gaps = 11/237 (4%)
Query: 37  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
           +SS+ F  +  +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S 
Sbjct: 27  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 86
Query: 97  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
              D++L++  +   K L+  KGH + V   +     +  +SGS D +V +WD +  KC 
Sbjct: 87  ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 143
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
             L     P +A     D  L+ + ++ G  R++D      G      +  D    + VK
Sbjct: 144 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 200
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS-PEGMFVISG 269
           FS +G+ +L  T++  + + D  +G  L TY     +    + A+FS   G +++SG
Sbjct: 201 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSG 256

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 113/237 (47%), Gaps = 11/237 (4%)
Query: 37  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
           +SS+ F  +  +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S 
Sbjct: 31  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 90
Query: 97  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
              D++L++  +   K L+  KGH + V   +     +  +SGS D +V +WD +  KC 
Sbjct: 91  ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 147
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
             L     P +A     D  L+ + ++ G  R++D      G      +  D    + VK
Sbjct: 148 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 204
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS-PEGMFVISG 269
           FS +G+ +L  T++  + + D  +G  L TY     +    + A+FS   G +++SG
Sbjct: 205 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSG 260

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 100/211 (47%), Gaps = 9/211 (4%)
Query: 37  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
           +SS+ F  +  +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S 
Sbjct: 29  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 97  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
              D++L++  +   K L+  KGH + V   +     +  +SGS D +V +WD +   C 
Sbjct: 89  ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCL 145
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
             L     P +A     D  L+ + ++ G  R++D      G      +  D    + VK
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 202
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY 244
           FS +G+ +L  T++  + + D  +G  L TY
Sbjct: 203 FSPNGKYILAATLDNDLKLWDYSKGKCLKTY 233

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 100/211 (47%), Gaps = 9/211 (4%)
Query: 37  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
           +SS+ F  +  +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S 
Sbjct: 29  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 97  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
              D++L++  +   K L+  KGH + V   +     +  +SGS D +V +WD +   C 
Sbjct: 89  ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCL 145
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
             L     P +A     D  L+ + ++ G  R++D      G      +  D    + VK
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 202
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY 244
           FS +G+ +L  T++  + + D  +G  L TY
Sbjct: 203 FSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 95/234 (40%), Gaps = 47/234 (20%)
Query: 37  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYS-S 95
           +S+  F  S   ++TAS D +  L+DV +   L++ +   +G D++C    P+    +  
Sbjct: 157 LSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHG--HGADVLCLDLAPSETGNTFV 214
Query: 96  KNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC 155
             G D+   +  +   + ++ F+ H   V S+    S D F SGS D T  L+D RA+  
Sbjct: 215 SGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD-- 272
Query: 156 QGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFS 215
                   R  A Y  + ++F                                A+ V FS
Sbjct: 273 --------REVAIYSKESIIFG-------------------------------ASSVDFS 293
Query: 216 NDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG 269
             GRL+     +  I+V D  +G+ +S       +R STL    SP+G    SG
Sbjct: 294 LSGRLLFAGYNDYTINVWDVLKGSRVSIL-FGHENRVSTLR--VSPDGTAFCSG 344

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 96/223 (43%), Gaps = 27/223 (12%)
Query: 29  SFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 87
           +   +NG ++S+       + L++AS D+++  + +T        + +K+GV +  F  H
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG-------DDQKFGVPVRSFKGH 64
Query: 88  PTTV---------IYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFIS 138
              V          Y+    WD++LRL  +   +  + F GH   V+S+ +       IS
Sbjct: 65  SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 139 GSLDRTVLLWDQRAEKCQGLL-------RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK 191
           GS D+T+ +W  + +    LL       +V+  P    DD  +    A  G  +M  A  
Sbjct: 125 GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA--GNDKMVKAWN 182
Query: 192 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD 234
             +   +   +G + S+ N +  S DG L+     +G I + +
Sbjct: 183 LNQFQIEADFIGHN-SNINTLTASPDGTLIASAGKDGEIMLWN 224

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 96/223 (43%), Gaps = 27/223 (12%)
Query: 29  SFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 87
           +   +NG ++S+       + L++AS D+++  + +T        + +K+GV +  F  H
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG-------DDQKFGVPVRSFKGH 64
Query: 88  PTTV---------IYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFIS 138
              V          Y+    WD++LRL  +   +  + F GH   V+S+ +       IS
Sbjct: 65  SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 139 GSLDRTVLLWDQRAEKCQGLL-------RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK 191
           GS D+T+ +W  + +    LL       +V+  P    DD  +    A  G  +M  A  
Sbjct: 125 GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA--GNDKMVKAWN 182
Query: 192 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD 234
             +   +   +G + S+ N +  S DG L+     +G I + +
Sbjct: 183 LNQFQIEADFIGHN-SNINTLTASPDGTLIASAGKDGEIMLWN 224

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 96/223 (43%), Gaps = 27/223 (12%)
Query: 29  SFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 87
           +   +NG ++S+       + L++AS D+++  + +T        + +K+GV +  F  H
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG-------DDQKFGVPVRSFKGH 64
Query: 88  PTTV---------IYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFIS 138
              V          Y+    WD++LRL  +   +  + F GH   V+S+ +       IS
Sbjct: 65  SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 139 GSLDRTVLLWDQRAEKCQGLL-------RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK 191
           GS D+T+ +W  + +    LL       +V+  P    DD  +    A  G  +M  A  
Sbjct: 125 GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA--GNDKMVKAWN 182
Query: 192 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD 234
             +   +   +G + S+ N +  S DG L+     +G I + +
Sbjct: 183 LNQFQIEADFIGHN-SNINTLTASPDGTLIASAGKDGEIMLWN 224

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 96/223 (43%), Gaps = 27/223 (12%)
Query: 29  SFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 87
           +   +NG ++S+       + L++AS D+++  + +T        + +K+GV +  F  H
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG-------DDQKFGVPVRSFKGH 64
Query: 88  PTTV---------IYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFIS 138
              V          Y+    WD++LRL  +   +  + F GH   V+S+ +       IS
Sbjct: 65  SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 139 GSLDRTVLLWDQRAEKCQGLL-------RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK 191
           GS D+T+ +W  + +    LL       +V+  P    DD  +    A  G  +M  A  
Sbjct: 125 GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA--GNDKMVKAWN 182
Query: 192 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD 234
             +   +   +G + S+ N +  S DG L+     +G I + +
Sbjct: 183 LNQFQIEADFIGHN-SNINTLTASPDGTLIASAGKDGEIMLWN 224

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 96/223 (43%), Gaps = 27/223 (12%)
Query: 29  SFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 87
           +   +NG ++S+       + L++AS D+++  + +T        + +K+GV +  F  H
Sbjct: 6   TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG-------DDQKFGVPVRSFKGH 58
Query: 88  PTTV---------IYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFIS 138
              V          Y+    WD++LRL  +   +  + F GH   V+S+ +       IS
Sbjct: 59  SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS 118
Query: 139 GSLDRTVLLWDQRAEKCQGLL-------RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK 191
           GS D+T+ +W  + +    LL       +V+  P    DD  +    A  G  +M  A  
Sbjct: 119 GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA--GNDKMVKAWN 176
Query: 192 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD 234
             +   +   +G + S+ N +  S DG L+     +G I + +
Sbjct: 177 LNQFQIEADFIGHN-SNINTLTASPDGTLIASAGKDGEIMLWN 218

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/132 (20%), Positives = 61/132 (46%), Gaps = 3/132 (2%)
Query: 29  SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP 88
           + + +   +  + F  S   L + S D +I+L+D     C++T++   + V  V    + 
Sbjct: 145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG 204
Query: 89  TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLW 148
             ++ +S+   D+++++  +     ++ F GH + V  +          S S D+TV +W
Sbjct: 205 DHIVSASR---DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Query: 149 DQRAEKCQGLLR 160
               ++C+  LR
Sbjct: 262 VVATKECKAELR 273

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/223 (22%), Positives = 94/223 (42%), Gaps = 27/223 (12%)
Query: 29  SFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 87
           +   +NG ++S+       + L++AS D+++  + +T        + +K+GV +  F  H
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG-------DDQKFGVPVRSFKGH 64
Query: 88  PTTV---------IYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFIS 138
              V          Y+    WD++LRL  +   +  + F GH   V S+ +       IS
Sbjct: 65  SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIIS 124
Query: 139 GSLDRTVLLWDQRAEKCQGLL-------RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK 191
           GS D+T+ +W  + +    LL       +V+  P    DD  +    A  G  +   A  
Sbjct: 125 GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA--GNDKXVKAWN 182
Query: 192 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD 234
             +   +   +G + S+ N +  S DG L+     +G I + +
Sbjct: 183 LNQFQIEADFIGHN-SNINTLTASPDGTLIASAGKDGEIXLWN 224

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 15/139 (10%)
Query: 21  LQSMEVGMSFRDYNGR---ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKY 77
           L  +  G+S R + G    + S+ F   +  +V+AS D +I+L++ T   C  TI+    
Sbjct: 456 LWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN-TLGECKYTISEGGE 514
Query: 78  G----VDLVCF---TSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLC 130
           G    V  V F   T  PT V  S    WD+++++ +L + K      GH   V ++++ 
Sbjct: 515 GHRDWVSCVRFSPNTLQPTIVSAS----WDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVS 570
Query: 131 SSKDCFISGSLDRTVLLWD 149
                  SG  D  VLLWD
Sbjct: 571 PDGSLCASGGKDGVVLLWD 589

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/126 (21%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
Query: 24  MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVC 83
           +++  +F + + R+  +DFH +  +++T      + L++      +++I   +  V    
Sbjct: 3   LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK 62
Query: 84  FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR 143
           F +    +I  S    D  +R+ + +  + +  F+ H D + S+++  +K   +SGS D 
Sbjct: 63  FIARKNWIIVGSD---DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 144 TVLLWD 149
           TV LW+
Sbjct: 120 TVKLWN 125

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/126 (21%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
Query: 24  MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVC 83
           +++  +F + + R+  +DFH +  +++T      + L++      +++I   +  V    
Sbjct: 3   LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK 62
Query: 84  FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR 143
           F +    +I  S    D  +R+ + +  + +  F+ H D + S+++  +K   +SGS D 
Sbjct: 63  FIARKNWIIVGSD---DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 144 TVLLWD 149
           TV LW+
Sbjct: 120 TVKLWN 125

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/126 (21%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
Query: 24  MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVC 83
           +++  +F + + R+  +DFH +  +++T      + L++      +++I   +  V    
Sbjct: 3   LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK 62
Query: 84  FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR 143
           F +    +I  S    D  +R+ + +  + +  F+ H D + S+++  +K   +SGS D 
Sbjct: 63  FIARKNWIIVGSD---DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 144 TVLLWD 149
           TV LW+
Sbjct: 120 TVKLWN 125

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 159
           D  +R+  + + K +   +GH   + SL    S D  +SGS DRTV +WD R  +C   L
Sbjct: 144 DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL 203
Query: 160 RVQG---RPAAAYDDQGLVFAVAFGGYIRMFDAR 190
            ++      A +  D   + A +    +R++D+ 
Sbjct: 204 SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 237

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/126 (20%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
Query: 24  MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVC 83
           +++  +F + + R+  +DFH +  +++T      + +++      +++I   +  V    
Sbjct: 3   LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGK 62
Query: 84  FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR 143
           F +    +I  S    D  +R+ + +  + +  F+ H D + S+++  +K   +SGS D 
Sbjct: 63  FIARKNWIIVGSD---DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 144 TVLLWD 149
           TV LW+
Sbjct: 120 TVKLWN 125

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 9/117 (7%)
Query: 33  YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVI 92
           +   ++ +DF     Y+V+AS D +I++++ +    ++T+N  K G+   C       V+
Sbjct: 255 HRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI--ACLQYRDRLVV 310
Query: 93  YSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD 149
             S    D ++RL  +     LR  +GH + V  +   + +   +SG+ D  + +WD
Sbjct: 311 SGSS---DNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR--IVSGAYDGKIKVWD 362

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 17/147 (11%)
Query: 13  SLELSEEILQSMEVGMSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTAATCLKT 71
           +L     + + M +  + + +NG ++ +         +++AS D++I ++ +T       
Sbjct: 17  NLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTR------ 70
Query: 72  INSKKYGVDLVCFTSHP---TTVIYSS------KNGWDESLRLLSLHDNKYLRYFKGHHD 122
            +   YG+       H    + V+ SS         WD +LRL  L      R F GH  
Sbjct: 71  -DETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTK 129
Query: 123 RVVSLSLCSSKDCFISGSLDRTVLLWD 149
            V+S++  S     +SGS D+T+ LW+
Sbjct: 130 DVLSVAFSSDNRQIVSGSRDKTIKLWN 156

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/126 (22%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 33  YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVI 92
           ++  ++ + F      + +ASDD++++L++      L+T+      V  V F+    T+ 
Sbjct: 261 HSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDGQTIA 319
Query: 93  YSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA 152
            +S    D++++L +  + ++L+   GH   V  ++         S S D+TV LW++  
Sbjct: 320 SASD---DKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 375
Query: 153 EKCQGL 158
           +  Q L
Sbjct: 376 QLLQTL 381

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 100/232 (43%), Gaps = 22/232 (9%)
Query: 42  FHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE 101
           F      + +ASDD++++L++      L+T+      V  V F+    T+  +S    D+
Sbjct: 106 FSPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDGQTIASASD---DK 161
Query: 102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-- 159
           +++L +  + + L+   GH   V  ++         S S D+TV LW++  +  Q L   
Sbjct: 162 TVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH 220
Query: 160 --RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN 216
              V+G    A+   G   A A     +++++      G   + ++ G  S  N V F  
Sbjct: 221 SSSVRG---VAFSPDGQTIASASDDKTVKLWN----RNGQL-LQTLTGHSSSVNGVAFRP 272
Query: 217 DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS 268
           DG+ +   + +  + + +   G LL T        +S    +FSP+G  + S
Sbjct: 273 DGQTIASASDDKTVKLWNR-NGQLLQTLTGH---SSSVWGVAFSPDGQTIAS 320

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 63/140 (45%), Gaps = 17/140 (12%)
Query: 20  ILQSMEVGMSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTAATCLKTINSKKYG 78
           + + M +  + + +NG ++ +         +++AS D++I ++ +T        +   YG
Sbjct: 1   MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTR-------DETNYG 53
Query: 79  VDLVCFTSHP---TTVIYSS------KNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSL 129
           +       H    + V+ SS         WD +LRL  L      R F GH   V+S++ 
Sbjct: 54  IPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAF 113
Query: 130 CSSKDCFISGSLDRTVLLWD 149
            S     +SGS D+T+ LW+
Sbjct: 114 SSDNRQIVSGSRDKTIKLWN 133

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 77/190 (40%), Gaps = 29/190 (15%)
Query: 30  FRDYNGRISSMDF--HKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 87
           F  +N  +  +D   +K+  Y+VT S D ++ ++ +   + +   + +++   LV  T  
Sbjct: 199 FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPD-HGEEHDYPLVFHTPE 257
Query: 88  PTTVIYSSKNGWDESLRLLSLHDN-------------------KYLRYFKGHHDRVVSLS 128
                     G   S+R +S H N                   K L    GH DR+ S  
Sbjct: 258 ENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTI 317
Query: 129 LCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAA----YDDQGLVFAVAFGGYI 184
               +   IS S+D T+ +WD   E  + +  +QG  A        D+ LV A A  G I
Sbjct: 318 YDHERKRCISASMDTTIRIWD--LENGELMYTLQGHTALVGLLRLSDKFLVSAAA-DGSI 374
Query: 185 RMFDARKYEK 194
           R +DA  Y +
Sbjct: 375 RGWDANDYSR 384

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 24  MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA---TCLKTINSKKYGVD 80
            E   +   +   + S+ +  S + L T S D+S+ +++V       C+  +NS    V 
Sbjct: 95  FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVK 154
Query: 81  LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL--RYFKGHHDRVVSLSLCSSKDCFIS 138
            V +  HP+  + +S + +D++++L    ++ ++     +GH   V SL+   S     S
Sbjct: 155 HVVW--HPSQELLASAS-YDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLAS 211
Query: 139 GSLDRTVLLWDQ 150
            S DRTV +W Q
Sbjct: 212 CSDDRTVRIWRQ 223

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	276
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.97
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.97
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.96
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.95
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.95
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.95
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.95
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.95
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.95
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.94
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.94
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.94
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.94
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.94
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.94
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.94
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.93
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.93
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.93
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.93
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.93
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.92
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.92
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.92
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.92
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.91
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.91
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.9
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.9
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.9
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.9
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.9
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.89
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.89
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.88
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.88
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.88
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.88
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.88
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.87
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.86
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.85
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.85
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.85
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.85
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.83
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.83
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.83
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.82
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.82
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.82
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.82
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.8
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.8
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.79
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.79
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.78
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.77
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.76
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.76
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.75
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.75
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.75
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.74
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.74
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.74
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.74
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.74
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.74
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.73
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.72
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.71
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.69
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.68
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.67
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.67
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.67
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.67
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.66
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.66
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.65
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.64
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.63
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.57
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.57
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.57
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.54
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.54
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.52
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.51
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.51
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.51
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.48
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.48
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.46
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.44
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.44
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.43
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.42
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.41
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.41
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.39
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.39
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.39
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.38
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.36
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.36
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.34
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.27
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.27
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.27
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.27
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.26
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.25
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.25
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.24
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.23
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.23
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.2
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.19
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.19
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.09
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.07
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.07
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.05
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.04
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.04
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.03
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.02
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.02
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	99.02
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.99
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.98
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.96
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.95
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.94
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.94
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.93
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.93
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.92
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.89
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.88
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.87
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.83
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.83
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.81
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.8
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.79
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.76
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.76
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.76
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.76
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.74
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.71
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.63
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.62
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.62
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.59
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.59
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.58
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.57
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.55
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	98.55
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.52
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.5
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.49
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.45
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.44
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.39
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.37
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.36
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.36
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	98.35
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.26
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.23
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.23
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.22
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.2
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	98.16
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.16
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	98.12
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.11
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	98.1
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.1
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.09
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	98.08
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	98.05
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	98.01
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.84
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.77
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.75
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.73
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.72
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.69
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.66
3ott_A	758	Two-component system sensor histidine kinase; beta	97.65
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.65
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	97.59
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.58
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.53
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.52
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.48
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.45
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.4
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.33
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.25
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.19
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.12
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.03
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	96.89
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.81
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.73
3ott_A	758	Two-component system sensor histidine kinase; beta	96.67
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	96.17
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.93
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	95.64
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.21
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	95.17
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.11
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	94.49
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.3
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	93.68
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	91.96
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	91.63
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	90.92
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	90.33
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	89.93
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	89.48
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	88.32
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	87.18
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	80.95

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.5e-47  Score=298.28  Aligned_cols=243  Identities=18%  Similarity=0.269  Sum_probs=218.0

Q ss_pred             cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i  103 (276)
                      ++..+++++|.+.|++++|+|++++|++++.||+|++||+++++.+..+..|..+|.+++|+|+++.+++++.   |+.|
T Consensus         3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~---d~~i   79 (304)
T 2ynn_A            3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD---DFRI   79 (304)
T ss_dssp             CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEET---TSEE
T ss_pred             ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECC---CCEE
Confidence            4567889999999999999999999999999999999999999999999999999999999999999999998   9999


Q ss_pred             EEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCce-eeeeE--eecCCCeeEecC-CCcEEEEe
Q 023822          104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK-CQGLL--RVQGRPAAAYDD-QGLVFAVA  179 (276)
Q Consensus       104 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~--~~~~~~~~~~~~-~~~~l~~~  179 (276)
                      ++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||++++. ....+  +...+.+++|+| ++.+++++
T Consensus        80 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sg  159 (304)
T 2ynn_A           80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG  159 (304)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEE
T ss_pred             EEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEE
Confidence            999999999999999999999999999999999999999999999999874 34444  556688999999 56777766


Q ss_pred             e-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECC--CCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEE
Q 023822          180 F-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN--DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE  256 (276)
Q Consensus       180 ~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~  256 (276)
                      + |+.|++||++.....   ......+...+..+.|+|  ++++|++++.|+.|++||+++++++..+.   +|...|..
T Consensus       160 s~D~~v~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~---~h~~~v~~  233 (304)
T 2ynn_A          160 CLDRTVKVWSLGQSTPN---FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE---GHMSNVSF  233 (304)
T ss_dssp             ETTSEEEEEETTCSSCS---EEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEE---CCSSCEEE
T ss_pred             eCCCeEEEEECCCCCcc---ceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeC---CCCCCEEE
Confidence            6 999999999875531   222345667889999987  67899999999999999999999999998   79999999


Q ss_pred             EEECCCCcEEEEecCCCCC
Q 023822          257 ASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       257 ~~~s~~g~~l~~~~~dg~v  275 (276)
                      ++|+|++++|++|+.||+|
T Consensus       234 ~~~~p~~~~l~s~s~Dg~i  252 (304)
T 2ynn_A          234 AVFHPTLPIIISGSEDGTL  252 (304)
T ss_dssp             EEECSSSSEEEEEETTSCE
T ss_pred             EEECCCCCEEEEEcCCCeE
Confidence            9999999999999999986

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=4e-47  Score=299.08  Aligned_cols=241  Identities=15%  Similarity=0.212  Sum_probs=224.7

Q ss_pred             ccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceE
Q 023822           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (276)
Q Consensus        25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~  104 (276)
                      .....+.+|...|.+++|++++.++++++.|++|++||+.+++.+..+..+...+.+++|+|+++++++++.   ++.|+
T Consensus        71 ~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~---dg~v~  147 (321)
T 3ow8_A           71 DLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTH---VGKVN  147 (321)
T ss_dssp             EEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECT---TSEEE
T ss_pred             eeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcC---CCcEE
Confidence            445568999999999999999999999999999999999999999999988889999999999999999998   99999


Q ss_pred             EEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-C
Q 023822          105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-G  181 (276)
Q Consensus       105 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d  181 (276)
                      +|++++++....+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+  +...+.+++|+|++.+|++++ |
T Consensus       148 i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~d  227 (321)
T 3ow8_A          148 IFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDD  227 (321)
T ss_dssp             EEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTT
T ss_pred             EEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCC
Confidence            9999999999999999999999999999999999999999999999999988887  455688999999999988888 8


Q ss_pred             CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECC
Q 023822          182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP  261 (276)
Q Consensus       182 ~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~  261 (276)
                      +.|++||++..+.    ...+.+|...|.+++|+|++++|++++.|+.|++||+.+++++..+.   +|...|.+++|+|
T Consensus       228 g~i~iwd~~~~~~----~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~---~h~~~v~~v~~s~  300 (321)
T 3ow8_A          228 GYIKIYDVQHANL----AGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF---DHQDQVWGVKYNG  300 (321)
T ss_dssp             SCEEEEETTTCCE----EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCEEEEEECT
T ss_pred             CeEEEEECCCcce----eEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEc---CCCCcEEEEEECC
Confidence            9999999987553    56677899999999999999999999999999999999999999998   7899999999999


Q ss_pred             CCcEEEEecCCCCC
Q 023822          262 EGMFVISGRVSPFS  275 (276)
Q Consensus       262 ~g~~l~~~~~dg~v  275 (276)
                      +|++|++++.||+|
T Consensus       301 ~g~~l~s~~~d~~i  314 (321)
T 3ow8_A          301 NGSKIVSVGDDQEI  314 (321)
T ss_dssp             TSSEEEEEETTCCE
T ss_pred             CCCEEEEEeCCCeE
Confidence            99999999999976

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.7e-46  Score=305.02  Aligned_cols=239  Identities=18%  Similarity=0.278  Sum_probs=222.3

Q ss_pred             ceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEE
Q 023822           27 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL  106 (276)
Q Consensus        27 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~  106 (276)
                      ...+.+|.++|++++|+|++++|++|+.||+|++||+.+++....+.+|...|.+++|+|+++++++++.   |+.|++|
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~---D~~i~iw  177 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA---DMTIKLW  177 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEET---TSCCCEE
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeC---CCeEEEE
Confidence            4567899999999999999999999999999999999999999999999999999999999999999998   9999999


Q ss_pred             EccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-CCe
Q 023822          107 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-GGY  183 (276)
Q Consensus       107 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d~~  183 (276)
                      |+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||++++.++..+  +...+..+.++|++.++++++ |+.
T Consensus       178 d~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~  257 (410)
T 1vyh_C          178 DFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT  257 (410)
T ss_dssp             ETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             eCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCe
Confidence            99999999999999999999999999999999999999999999999988887  445577899999999888887 999


Q ss_pred             EEEEecccCCCCCeeeeeecCCCCCceEEEECCC--------------------CcEEEEeecCCcEEEEECCCCcEEEE
Q 023822          184 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSND--------------------GRLMLLTTMEGHIHVLDSFRGTLLST  243 (276)
Q Consensus       184 i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------------------~~~l~~~~~dg~i~i~d~~~~~~~~~  243 (276)
                      |++||+++.+.    ...+..|...|.+++|+|+                    |.+|++|+.|+.|++||+.+++++..
T Consensus       258 v~vwd~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~  333 (410)
T 1vyh_C          258 VRVWVVATKEC----KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT  333 (410)
T ss_dssp             EEEEETTTCCE----EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             EEEEECCCCce----eeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence            99999987654    5567788999999999996                    67899999999999999999999999


Q ss_pred             eecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          244 YNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       244 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      +.   +|...|.+++|+|+|++|++|+.||+|
T Consensus       334 ~~---~h~~~v~~v~~~~~g~~l~s~s~D~~i  362 (410)
T 1vyh_C          334 LV---GHDNWVRGVLFHSGGKFILSCADDKTL  362 (410)
T ss_dssp             EE---CCSSCEEEEEECSSSSCEEEEETTTEE
T ss_pred             EE---CCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence            98   799999999999999999999999975

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=5.2e-46  Score=295.21  Aligned_cols=247  Identities=23%  Similarity=0.328  Sum_probs=210.2

Q ss_pred             cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCC-----
Q 023822           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG-----   98 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-----   98 (276)
                      ++...++++|.++|++++|+|++++|++++.||+|++||+.+++.+..+..|...|.+++|+|+++++++++.++     
T Consensus        45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw  124 (340)
T 1got_B           45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY  124 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred             chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            455678999999999999999999999999999999999988888777777777777777777777666655410     


Q ss_pred             -------------------------------------CCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeC
Q 023822           99 -------------------------------------WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL  141 (276)
Q Consensus        99 -------------------------------------~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  141 (276)
                                                           .|+.|++||+++++.+..+.+|...|.+++|+|++++|++++.
T Consensus       125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~  204 (340)
T 1got_B          125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC  204 (340)
T ss_dssp             ETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeC
Confidence                                                 1566666776667777778889999999999999999999999


Q ss_pred             CCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCC
Q 023822          142 DRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG  218 (276)
Q Consensus       142 d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  218 (276)
                      |+.|++||++++++...+  +...+.+++|+|++.++++++ |+.|++||++..+.  ...+....+...+.+++|+|+|
T Consensus       205 d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~~g  282 (340)
T 1got_B          205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE--LMTYSHDNIICGITSVSFSKSG  282 (340)
T ss_dssp             TSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--EEEECCTTCCSCEEEEEECTTS
T ss_pred             CCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE--EEEEccCCcccceEEEEECCCC
Confidence            999999999999888877  556688999999999888888 89999999987542  1222223344579999999999


Q ss_pred             cEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          219 RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       219 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      ++|++|+.||.|++||+.+++.+..+.   +|...|.+++|+|+|++|++|+.||+|
T Consensus       283 ~~l~~g~~d~~i~vwd~~~~~~~~~~~---~h~~~v~~~~~s~dg~~l~s~s~D~~i  336 (340)
T 1got_B          283 RLLLAGYDDFNCNVWDALKADRAGVLA---GHDNRVSCLGVTDDGMAVATGSWDSFL  336 (340)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEE---CCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred             CEEEEECCCCeEEEEEcccCcEeeEee---cCCCcEEEEEEcCCCCEEEEEcCCccE
Confidence            999999999999999999999999998   799999999999999999999999986

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.6e-46  Score=305.26  Aligned_cols=242  Identities=18%  Similarity=0.314  Sum_probs=223.7

Q ss_pred             cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i  103 (276)
                      .+....+++|.+.|.+++|+|++++|++|+.|++|++||+.+++++..+.+|...|.+++|+|+++++++++.   |+.|
T Consensus       140 ~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~---D~~i  216 (410)
T 1vyh_C          140 GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASR---DKTI  216 (410)
T ss_dssp             CCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEET---TSEE
T ss_pred             CcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeC---CCeE
Confidence            4556788999999999999999999999999999999999999999999999999999999999999999998   9999


Q ss_pred             EEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCC---------
Q 023822          104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQ---------  172 (276)
Q Consensus       104 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~---------  172 (276)
                      ++||+++++++..+.+|...|.++.|+|++++|++++.|+.|++||++++++...+  +...+.+++|+|+         
T Consensus       217 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  296 (410)
T 1vyh_C          217 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEA  296 (410)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGC
T ss_pred             EEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhh
Confidence            99999999999999999999999999999999999999999999999999888777  5556778999986         


Q ss_pred             -----------CcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcE
Q 023822          173 -----------GLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL  240 (276)
Q Consensus       173 -----------~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  240 (276)
                                 +.++++++ |+.|++||++++..    ...+.+|...|.+++|+|+|++|++++.||.|++||+.++++
T Consensus       297 ~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~----~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~  372 (410)
T 1vyh_C          297 TGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC----LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC  372 (410)
T ss_dssp             CSCC-------CCEEEEEETTSEEEEEETTTTEE----EEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCC
T ss_pred             ccccccccCCCCCEEEEEeCCCeEEEEECCCCce----EEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Confidence                       55677666 99999999987654    566778999999999999999999999999999999999999


Q ss_pred             EEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          241 LSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       241 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      +..+.   +|...|++++|+|++.+|++|+.||+|
T Consensus       373 ~~~~~---~h~~~v~~l~~~~~~~~l~sgs~D~~i  404 (410)
T 1vyh_C          373 MKTLN---AHEHFVTSLDFHKTAPYVVTGSVDQTV  404 (410)
T ss_dssp             CEEEE---CCSSCEEEEEECSSSSCEEEEETTSEE
T ss_pred             EEEEc---CCCCcEEEEEEcCCCCEEEEEeCCCcE
Confidence            99998   789999999999999999999999975

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.4e-45  Score=292.44  Aligned_cols=234  Identities=20%  Similarity=0.250  Sum_probs=202.3

Q ss_pred             eccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeee----eeeeeeceEEEEEeccCCeEEEeccCCCCCceEE
Q 023822           30 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKT----INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL  105 (276)
Q Consensus        30 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~  105 (276)
                      ...|...|.+++|+|++ .|++|+.||+|+|||+.+++.+..    ..+|...|.+++|+|++++|++++.   |+.|++
T Consensus        78 ~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~---d~~i~i  153 (344)
T 4gqb_B           78 GVQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSK---DICIKV  153 (344)
T ss_dssp             EEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEET---TSCEEE
T ss_pred             eeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeC---CCeEEE
Confidence            34567889999999985 788999999999999998875544    3478899999999999999999998   999999


Q ss_pred             EEccCCceeeeecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCceeeeeE----eecCCCeeEecCC-CcEEEEe
Q 023822          106 LSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLL----RVQGRPAAAYDDQ-GLVFAVA  179 (276)
Q Consensus       106 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~-~~~l~~~  179 (276)
                      ||+++++.+..+.+|...|.+++|+|++. +|++++.|++|++||+++++....+    +...+.+++|+|+ +++++++
T Consensus       154 wd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg  233 (344)
T 4gqb_B          154 WDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFG  233 (344)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEE
T ss_pred             EECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEe
Confidence            99999999999999999999999999885 7899999999999999998887766    2334668999985 5677776


Q ss_pred             e-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCC-cEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEE
Q 023822          180 F-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA  257 (276)
Q Consensus       180 ~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~  257 (276)
                      + |+.|++||+++++.    +..+.+|...|++++|+|++ ++|++|+.|+.|+|||+.+++++. +.   +|.+.|+++
T Consensus       234 ~~dg~v~~wd~~~~~~----~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~---~H~~~V~~v  305 (344)
T 4gqb_B          234 DENGTVSLVDTKSTSC----VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ---AHRDFVRDA  305 (344)
T ss_dssp             ETTSEEEEEESCC--C----CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC---CCSSCEEEE
T ss_pred             ccCCcEEEEECCCCcE----EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec---CCCCCEEEE
Confidence            6 89999999998765    56677899999999999998 679999999999999999887654 44   699999999


Q ss_pred             EECCCCc-EEEEecCCCCC
Q 023822          258 SFSPEGM-FVISGRVSPFS  275 (276)
Q Consensus       258 ~~s~~g~-~l~~~~~dg~v  275 (276)
                      +|+|+++ +|++++.||+|
T Consensus       306 ~~sp~~~~llas~s~D~~v  324 (344)
T 4gqb_B          306 TWSPLNHSLLTTVGWDHQV  324 (344)
T ss_dssp             EECSSSTTEEEEEETTSCE
T ss_pred             EEeCCCCeEEEEEcCCCeE
Confidence            9999986 67799999986

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.4e-45  Score=291.89  Aligned_cols=243  Identities=23%  Similarity=0.362  Sum_probs=211.5

Q ss_pred             ccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeee---------------------------------
Q 023822           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKT---------------------------------   71 (276)
Q Consensus        25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~---------------------------------   71 (276)
                      +....+++|.++|++++|+|++++|++|+.||+|++||..+++....                                 
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~  134 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP  134 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence            45677899999999999999999999999999999999876554332                                 


Q ss_pred             ---------------eeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEecc--CCC
Q 023822           72 ---------------INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS--SKD  134 (276)
Q Consensus        72 ---------------~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~--~~~  134 (276)
                                     +..|...|.+++|+|++..+++++.   |+.|++||+++++.+..+.+|...|.+++|+|  +++
T Consensus       135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~---D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~  211 (354)
T 2pbi_B          135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASG---DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGN  211 (354)
T ss_dssp             CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEET---TSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCC
T ss_pred             EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeC---CCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCC
Confidence                           2346667888999999999999988   99999999999999999999999999999987  467


Q ss_pred             EEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceE
Q 023822          135 CFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANV  211 (276)
Q Consensus       135 ~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~  211 (276)
                      +|++++.|+.|++||+++++++..+  +...+.+++|+|++.++++++ |+.|++||++..+.  ...+....+...+.+
T Consensus       212 ~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~--~~~~~~~~~~~~~~~  289 (354)
T 2pbi_B          212 TFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADRE--VAIYSKESIIFGASS  289 (354)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--EEEECCTTCCSCEEE
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE--EEEEcCCCcccceeE
Confidence            9999999999999999999988877  556688999999999888887 99999999987542  222222333457889


Q ss_pred             EEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          212 VKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       212 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      ++|+|+|++|++|+.|+.|++||+.+++.+..+.   +|...|++++|+|+|++|++|+.||+|
T Consensus       290 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~---~h~~~v~~l~~spdg~~l~sgs~D~~v  350 (354)
T 2pbi_B          290 VDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF---GHENRVSTLRVSPDGTAFCSGSWDHTL  350 (354)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC---CCSSCEEEEEECTTSSCEEEEETTSEE
T ss_pred             EEEeCCCCEEEEEECCCcEEEEECCCCceEEEEE---CCCCcEEEEEECCCCCEEEEEcCCCCE
Confidence            9999999999999999999999999999998888   799999999999999999999999975

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.5e-45  Score=287.39  Aligned_cols=239  Identities=18%  Similarity=0.227  Sum_probs=215.7

Q ss_pred             ceeeccCCCcEEEEEEcCC----CCEEEEeecCCeEEEEEccCCee--eeeeeeeeeceEEEEEeccCCeEEEeccCCCC
Q 023822           27 GMSFRDYNGRISSMDFHKS----SSYLVTASDDESIRLYDVTAATC--LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD  100 (276)
Q Consensus        27 ~~~~~~h~~~v~~~~~~~~----~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d  100 (276)
                      .+.+++|.++|++++|+|+    +.+|++|+.|++|++|++..++.  ...+.+|...|.+++|++++..+++++.   |
T Consensus        25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~---D  101 (321)
T 3ow8_A           25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSL---D  101 (321)
T ss_dssp             EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEET---T
T ss_pred             eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeC---C
Confidence            4567899999999999974    56899999999999999987654  4467899999999999999999999998   9


Q ss_pred             CceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe--ecCCCeeEecCCCcEEEE
Q 023822          101 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR--VQGRPAAAYDDQGLVFAV  178 (276)
Q Consensus       101 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~  178 (276)
                      +.|++||+.+++.+..+..|...+.+++|+|++++|++++.|+.|++||+++++....+.  ...+.+++|+|++++|++
T Consensus       102 ~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~las  181 (321)
T 3ow8_A          102 AHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLAS  181 (321)
T ss_dssp             SEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEE
T ss_pred             CcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEE
Confidence            999999999999999999999999999999999999999999999999999988877763  345678999999999988


Q ss_pred             ee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEE
Q 023822          179 AF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA  257 (276)
Q Consensus       179 ~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~  257 (276)
                      +. |+.|++||+++++.    ...+..|..+|.+++|+|++++|++++.|+.|++||+++++....+.   +|...|.++
T Consensus       182 g~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~h~~~v~~~  254 (321)
T 3ow8_A          182 GAIDGIINIFDIATGKL----LHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS---GHASWVLNV  254 (321)
T ss_dssp             EETTSCEEEEETTTTEE----EEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEEC---CCSSCEEEE
T ss_pred             EcCCCeEEEEECCCCcE----EEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEc---CCCCceEEE
Confidence            88 99999999987653    56677899999999999999999999999999999999999998888   799999999


Q ss_pred             EECCCCcEEEEecCCCCC
Q 023822          258 SFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       258 ~~s~~g~~l~~~~~dg~v  275 (276)
                      +|+|++++|++++.||+|
T Consensus       255 ~~sp~~~~l~s~s~D~~v  272 (321)
T 3ow8_A          255 AFCPDDTHFVSSSSDKSV  272 (321)
T ss_dssp             EECTTSSEEEEEETTSCE
T ss_pred             EECCCCCEEEEEeCCCcE
Confidence            999999999999999976

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=6.3e-45  Score=284.63  Aligned_cols=242  Identities=18%  Similarity=0.266  Sum_probs=215.0

Q ss_pred             cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i  103 (276)
                      .+....+..|..+|.+++|+|++++|++|+.|++|++||+.+++.+..+..|...|.+++|+|+++++++++.   |+.|
T Consensus        45 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~---D~~v  121 (304)
T 2ynn_A           45 QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD---DLTV  121 (304)
T ss_dssp             TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEET---TSCE
T ss_pred             CceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECC---CCeE
Confidence            4456778899999999999999999999999999999999999999999999999999999999999999998   9999


Q ss_pred             EEEEccCC-ceeeeecccCcceEEEEecc-CCCEEEEeeCCCeEEEEeccCceeeeeEe---ecCCCeeEecC--CCcEE
Q 023822          104 RLLSLHDN-KYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLR---VQGRPAAAYDD--QGLVF  176 (276)
Q Consensus       104 ~~~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~--~~~~l  176 (276)
                      ++||++++ .....+.+|...|.+++|+| ++.+|++++.|++|++||++.......+.   ...+..+.++|  ++.++
T Consensus       122 ~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  201 (304)
T 2ynn_A          122 KLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYM  201 (304)
T ss_dssp             EEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEE
T ss_pred             EEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEE
Confidence            99999887 45567889999999999999 57899999999999999998877665553   24456777876  66677


Q ss_pred             EEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceE
Q 023822          177 AVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTL  255 (276)
Q Consensus       177 ~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  255 (276)
                      ++++ |+.|++||+++++.    ...+.+|...|.+++|+|++++|++|+.||.|++||+.+++.+..+.   .+...+.
T Consensus       202 ~s~s~D~~i~iWd~~~~~~----~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~---~~~~~~~  274 (304)
T 2ynn_A          202 ITASDDLTIKIWDYQTKSC----VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN---VGLERSW  274 (304)
T ss_dssp             EEEETTSEEEEEETTTTEE----EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC---CSSSSEE
T ss_pred             EEEcCCCeEEEEeCCCCcc----ceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeecc---CCCccEE
Confidence            7776 99999999987654    66778899999999999999999999999999999999999999998   6788999


Q ss_pred             EEEECCCCc--EEEEecCCCCC
Q 023822          256 EASFSPEGM--FVISGRVSPFS  275 (276)
Q Consensus       256 ~~~~s~~g~--~l~~~~~dg~v  275 (276)
                      +++|+|++.  ++++|+.||++
T Consensus       275 ~~~~~~~~~~~~~asg~~~g~~  296 (304)
T 2ynn_A          275 CIATHPTGRKNYIASGFDNGFT  296 (304)
T ss_dssp             EEEECTTCGGGCEEEEETTEEE
T ss_pred             EEEECCCCCceEEEEecCCceE
Confidence            999999885  69999998864

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=5.1e-44  Score=281.27  Aligned_cols=239  Identities=18%  Similarity=0.294  Sum_probs=209.3

Q ss_pred             ccccceeeccCCCcEEEEEEcCCC-CEEEEeecCCeEEEEEccC-----CeeeeeeeeeeeceEEEEEeccCCeEEEecc
Q 023822           23 SMEVGMSFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTA-----ATCLKTINSKKYGVDLVCFTSHPTTVIYSSK   96 (276)
Q Consensus        23 ~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   96 (276)
                      .+.+..++.+|.++|++++|+|++ ++|++|+.|++|++|++..     +.++..+.+|...|.+++|+|+++++++++.
T Consensus         6 ~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~   85 (319)
T 3frx_A            6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW   85 (319)
T ss_dssp             EEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeC
Confidence            456667899999999999999965 8999999999999999864     3456788999999999999999999999998


Q ss_pred             CCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCC-
Q 023822           97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQG-  173 (276)
Q Consensus        97 ~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~-  173 (276)
                         |+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||++.. +...+  +...+..+.+.|.. 
T Consensus        86 ---D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-~~~~~~~h~~~v~~~~~~~~~~  161 (319)
T 3frx_A           86 ---DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEK  161 (319)
T ss_dssp             ---TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-EEEEECCCSSCEEEEEECCC--
T ss_pred             ---CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEEeccCCcEEEEEEccCCC
Confidence               999999999999999999999999999999999999999999999999999754 34444  45567788888854 


Q ss_pred             -----cEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecC
Q 023822          174 -----LVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK  247 (276)
Q Consensus       174 -----~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  247 (276)
                           ..+++++ |+.|++||+++.+.    ...+.+|...|.+++|+|+|++|++++.||.|++||+.+++.+..+.  
T Consensus       162 ~~~~~~~l~s~~~d~~i~~wd~~~~~~----~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~--  235 (319)
T 3frx_A          162 ADDDSVTIISAGNDKMVKAWNLNQFQI----EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS--  235 (319)
T ss_dssp             ----CCEEEEEETTSCEEEEETTTTEE----EEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE--
T ss_pred             CCCCccEEEEEeCCCEEEEEECCcchh----heeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec--
Confidence                 3555555 99999999987543    55677899999999999999999999999999999999999998887  


Q ss_pred             CCCCCceEEEEECCCCcEEEEecCCC
Q 023822          248 PVSRNSTLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       248 ~~~~~~v~~~~~s~~g~~l~~~~~dg  273 (276)
                        +...|.+++|+|++.+|++++.++
T Consensus       236 --~~~~v~~~~~sp~~~~la~~~~~~  259 (319)
T 3frx_A          236 --AQDEVFSLAFSPNRYWLAAATATG  259 (319)
T ss_dssp             --CCSCEEEEEECSSSSEEEEEETTE
T ss_pred             --CCCcEEEEEEcCCCCEEEEEcCCC
Confidence              457899999999999999988765

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=5.3e-44  Score=278.48  Aligned_cols=244  Identities=12%  Similarity=0.081  Sum_probs=203.7

Q ss_pred             eeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccC--CeeeeeeeeeeeceEEEEEecc--CCeEEEeccCCCCCce
Q 023822           28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA--ATCLKTINSKKYGVDLVCFTSH--PTTVIYSSKNGWDESL  103 (276)
Q Consensus        28 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~~d~~i  103 (276)
                      ..+.+|.+.|++++|+|+|++||+|+.|++|+|||+..  .+.+..+.+|..+|.+++|+++  ++.|++++.   |+.|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~---D~~v   79 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY---DGKV   79 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEET---TTEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcC---CCEE
Confidence            45789999999999999999999999999999999974  4677889999999999999864  889999998   9999


Q ss_pred             EEEEccCCc--eeeeecccCcceEEEEeccC--CCEEEEeeCCCeEEEEeccCceee--eeE--eecCCCeeEecCC---
Q 023822          104 RLLSLHDNK--YLRYFKGHHDRVVSLSLCSS--KDCFISGSLDRTVLLWDQRAEKCQ--GLL--RVQGRPAAAYDDQ---  172 (276)
Q Consensus       104 ~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~--~~~--~~~~~~~~~~~~~---  172 (276)
                      ++||+++++  .+..+..|...|.+++|+|+  +++|++++.|+.|++||++.....  ..+  +...+.+++|+|+   
T Consensus        80 ~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  159 (297)
T 2pm7_B           80 MIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE  159 (297)
T ss_dssp             EEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC--
T ss_pred             EEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccc
Confidence            999998874  55677889999999999997  889999999999999999876322  222  4556778999996   


Q ss_pred             ----------CcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCC---cEEEEeecCCcEEEEECCCC
Q 023822          173 ----------GLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG---RLMLLTTMEGHIHVLDSFRG  238 (276)
Q Consensus       173 ----------~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~  238 (276)
                                +++|++++ |+.|++||++...........+.+|...|.+++|+|++   ++|++++.|+.|++||+.+.
T Consensus       160 ~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~  239 (297)
T 2pm7_B          160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE  239 (297)
T ss_dssp             ----------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             ccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence                      45666666 99999999987553222345677899999999999984   89999999999999998775


Q ss_pred             cE---EEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          239 TL---LSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       239 ~~---~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      ..   ...+. ...+...|.+++|+|+|++|++++.||+|
T Consensus       240 ~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~las~~~D~~v  278 (297)
T 2pm7_B          240 QGPWKKTLLK-EEKFPDVLWRASWSLSGNVLALSGGDNKV  278 (297)
T ss_dssp             TSCCEEEESS-SSCCSSCEEEEEECSSSCCEEEEETTSCE
T ss_pred             CCccceeeee-cccCCCcEEEEEECCCCCEEEEEcCCCcE
Confidence            31   22221 12578899999999999999999999976

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=6.9e-44  Score=287.09  Aligned_cols=250  Identities=21%  Similarity=0.324  Sum_probs=204.5

Q ss_pred             cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccC------
Q 023822           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN------   97 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~------   97 (276)
                      +...+++++|.++|++++|+|++++|++|+.|++|++||+.+++....+..|...|.+++|+|+++++++++.+      
T Consensus        56 ~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw  135 (380)
T 3iz6_a           56 LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIF  135 (380)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEE
T ss_pred             eEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEE
Confidence            34567799999999999999999999999999999999999999999888888888888888888777766540      


Q ss_pred             -----------------------------------------CCCCceEEEEccCCceeeee-----cccCcceEEEEecc
Q 023822           98 -----------------------------------------GWDESLRLLSLHDNKYLRYF-----KGHHDRVVSLSLCS  131 (276)
Q Consensus        98 -----------------------------------------~~d~~i~~~d~~~~~~~~~~-----~~~~~~i~~~~~~~  131 (276)
                                                               +.|+.|++||+.+++.+..+     .+|...|.+++|++
T Consensus       136 ~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  215 (380)
T 3iz6_a          136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS  215 (380)
T ss_dssp             ECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred             ECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence                                                     01556666666666555554     56888999999987


Q ss_pred             -CCCEEEEeeCCCeEEEEeccC-ceeeeeE--eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeee----
Q 023822          132 -SKDCFISGSLDRTVLLWDQRA-EKCQGLL--RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSV----  202 (276)
Q Consensus       132 -~~~~l~~~~~d~~i~iwd~~~-~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~----  202 (276)
                       ++++|++|+.|++|++||++. .+....+  +...+.+++|+|++.+|++++ |+.|++||+++++.  ...+..    
T Consensus       216 ~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~--~~~~~~~~~~  293 (380)
T 3iz6_a          216 LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQ--LQVYNREPDR  293 (380)
T ss_dssp             SSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEE--EEEECCCCSS
T ss_pred             CCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcE--EEEecccccc
Confidence             788999999999999999984 4555555  566789999999999888887 89999999997653  111111    


Q ss_pred             -cCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeec-CCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          203 -GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV-KPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       203 -~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                       ..+...+.+++|+|+|++|++|+.||.|++||+.+++.+..+.. ..+|.+.|.+++|+|+|++|++|+.||++
T Consensus       294 ~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i  368 (380)
T 3iz6_a          294 NDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNL  368 (380)
T ss_dssp             SCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCE
T ss_pred             cccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCE
Confidence             11223589999999999999999999999999999998877732 12688999999999999999999999986

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=5.3e-44  Score=285.28  Aligned_cols=238  Identities=16%  Similarity=0.224  Sum_probs=199.9

Q ss_pred             cceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeee----eeeeeeceEEEEEeccCCeEEEeccCCCCC
Q 023822           26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKT----INSKKYGVDLVCFTSHPTTVIYSSKNGWDE  101 (276)
Q Consensus        26 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~  101 (276)
                      ......+|...|++++|+|++. +++++.||+|+|||+.+++....    ...|...|.+++|+|++++|++++.   |+
T Consensus        86 ~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~---dg  161 (357)
T 4g56_B           86 LCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGK---DF  161 (357)
T ss_dssp             GCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEET---TS
T ss_pred             EecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeC---CC
Confidence            3445567999999999999975 55678899999999988765433    3468889999999999999999998   99


Q ss_pred             ceEEEEccCCceeeeecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCceeeeeE----eecCCCeeEecCCC-cE
Q 023822          102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLL----RVQGRPAAAYDDQG-LV  175 (276)
Q Consensus       102 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~-~~  175 (276)
                      .|++||+++++.+..+.+|...|.+++|+|++. ++++++.|+.|++||++++++...+    +...+.+++|+|++ .+
T Consensus       162 ~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~  241 (357)
T 4g56_B          162 SVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDT  241 (357)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTE
T ss_pred             eEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccce
Confidence            999999999999999999999999999999875 7899999999999999998877655    23346689999974 67


Q ss_pred             EEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCC-cEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCc
Q 023822          176 FAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS  253 (276)
Q Consensus       176 l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  253 (276)
                      ++++. |+.|++||+++++.    ...+..|...|++++|+|++ ++|++++.|+.|+|||+++++++..+    +|.+.
T Consensus       242 la~g~~d~~i~~wd~~~~~~----~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~----~H~~~  313 (357)
T 4g56_B          242 FACGDETGNVSLVNIKNPDS----AQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL----SHRDF  313 (357)
T ss_dssp             EEEEESSSCEEEEESSCGGG----CEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC----CCSSC
T ss_pred             EEEeecccceeEEECCCCcE----eEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC----CCCCC
Confidence            77766 89999999998664    55677888999999999987 67999999999999999999887665    48999


Q ss_pred             eEEEEECC-CCcEEEEecCCCCC
Q 023822          254 TLEASFSP-EGMFVISGRVSPFS  275 (276)
Q Consensus       254 v~~~~~s~-~g~~l~~~~~dg~v  275 (276)
                      |++++|+| ++++|++++.||+|
T Consensus       314 V~~vafsP~d~~~l~s~s~Dg~v  336 (357)
T 4g56_B          314 VTGVAWSPLDHSKFTTVGWDHKV  336 (357)
T ss_dssp             EEEEEECSSSTTEEEEEETTSCE
T ss_pred             EEEEEEeCCCCCEEEEEcCCCeE
Confidence            99999998 89999999999986

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.8e-43  Score=281.12  Aligned_cols=246  Identities=12%  Similarity=0.172  Sum_probs=207.9

Q ss_pred             ccccceeeccCCC-cEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeee---eeeeeeeceEEEEEeccCCeEEEeccCC
Q 023822           23 SMEVGMSFRDYNG-RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLK---TINSKKYGVDLVCFTSHPTTVIYSSKNG   98 (276)
Q Consensus        23 ~~~~~~~~~~h~~-~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~~~   98 (276)
                      .++...++.+|.. .|.+++|+|++++||+|+.|++|+|||+.+++...   ...+|...|.+++|+|++++|++++.  
T Consensus         4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~--   81 (345)
T 3fm0_A            4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF--   81 (345)
T ss_dssp             CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEET--
T ss_pred             cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEEC--
Confidence            4567788999988 99999999999999999999999999998876432   23578899999999999999999998  


Q ss_pred             CCCceEEEEccCCc--eeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCcee---eeeE--eecCCCeeEecC
Q 023822           99 WDESLRLLSLHDNK--YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC---QGLL--RVQGRPAAAYDD  171 (276)
Q Consensus        99 ~d~~i~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~--~~~~~~~~~~~~  171 (276)
                       |+.+++||+..+.  .+..+.+|...|.+++|+|++++|++++.|++|++||++....   ...+  +...+.+++|+|
T Consensus        82 -D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p  160 (345)
T 3fm0_A           82 -DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP  160 (345)
T ss_dssp             -TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS
T ss_pred             -CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC
Confidence             9999999998764  5678899999999999999999999999999999999987643   3333  455678999999


Q ss_pred             CCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCC------------
Q 023822          172 QGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG------------  238 (276)
Q Consensus       172 ~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~------------  238 (276)
                      ++.+|++++ |+.|++||.+..+.  .....+.+|...|.+++|+|+|++|++++.|+.|++|+....            
T Consensus       161 ~~~~l~s~s~d~~i~~w~~~~~~~--~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~  238 (345)
T 3fm0_A          161 SQELLASASYDDTVKLYREEEDDW--VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSD  238 (345)
T ss_dssp             SSSCEEEEETTSCEEEEEEETTEE--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---
T ss_pred             CCCEEEEEeCCCcEEEEEecCCCE--EEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccC
Confidence            998888887 99999999986431  224567789999999999999999999999999999996322            


Q ss_pred             ---cEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          239 ---TLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       239 ---~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                         +++..+..  .|...|.+++|+|++..|++++.|+.+
T Consensus       239 ~~~~~~~~~~~--~h~~~v~~v~~~~~~~~l~s~~~d~~i  276 (345)
T 3fm0_A          239 PSWKCICTLSG--FHSRTIYDIAWCQLTGALATACGDDAI  276 (345)
T ss_dssp             CEEEEEEEECS--SCSSCEEEEEECTTTCCEEEEETTSCE
T ss_pred             CccceeEEecC--CCCCcEEEEEEecCCCEEEEEeCCCeE
Confidence               22333331  378899999999999999999999875

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2e-42  Score=271.42  Aligned_cols=247  Identities=22%  Similarity=0.419  Sum_probs=215.3

Q ss_pred             hccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCC
Q 023822           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE  101 (276)
Q Consensus        22 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~  101 (276)
                      ..+....++.+|.++|++++|+|++++|++++.||.|++|++.+++....+..|...|.+++|+|+++++++++.   |+
T Consensus        11 ~~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---d~   87 (312)
T 4ery_A           11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD---DK   87 (312)
T ss_dssp             CCCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET---TS
T ss_pred             CCceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECC---CC
Confidence            345667788999999999999999999999999999999999999999999999999999999999999999998   99


Q ss_pred             ceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEe
Q 023822          102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVA  179 (276)
Q Consensus       102 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~  179 (276)
                      .|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||+++++....+  +...+.+++|+|++.+++++
T Consensus        88 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  167 (312)
T 4ery_A           88 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS  167 (312)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             EEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEE
Confidence            9999999999999999999999999999999999999999999999999999888777  44567789999999888887


Q ss_pred             e-CCeEEEEecccCCCCCeeeee-ecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEE
Q 023822          180 F-GGYIRMFDARKYEKGPFDIFS-VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA  257 (276)
Q Consensus       180 ~-d~~i~~~d~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~  257 (276)
                      + |+.|++||+++.+.    ... ...+..++..++|+|++++|++++.|+.|++||+.+++.+..+..+......+...
T Consensus       168 ~~d~~i~~wd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  243 (312)
T 4ery_A          168 SYDGLCRIWDTASGQC----LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN  243 (312)
T ss_dssp             ETTSCEEEEETTTCCE----EEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEE
T ss_pred             eCCCcEEEEECCCCce----eeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEE
Confidence            7 99999999987543    222 33456689999999999999999999999999999999998887432112223333


Q ss_pred             EECCCCcEEEEecCCCCC
Q 023822          258 SFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       258 ~~s~~g~~l~~~~~dg~v  275 (276)
                      ...+++++|++|+.||.|
T Consensus       244 ~~~~~~~~l~sg~~dg~i  261 (312)
T 4ery_A          244 FSVTGGKWIVSGSEDNLV  261 (312)
T ss_dssp             EECSSSCEEEECCTTSCE
T ss_pred             EEeCCCcEEEEECCCCEE
Confidence            344788999999999975

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=3.8e-42  Score=270.64  Aligned_cols=241  Identities=17%  Similarity=0.256  Sum_probs=209.9

Q ss_pred             ccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceE
Q 023822           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (276)
Q Consensus        25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~  104 (276)
                      .+...+++|...|.+++|+|++++|++++.|++|++||+.+++.+..+.+|...|.+++|+|++..+++++.   |+.|+
T Consensus        56 ~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~---D~~i~  132 (319)
T 3frx_A           56 VPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR---DKTIK  132 (319)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEET---TSCEE
T ss_pred             ccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeC---CCeEE
Confidence            446778999999999999999999999999999999999999999999999999999999999999999998   99999


Q ss_pred             EEEccCCceeeeecccCcceEEEEeccC------CCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEE
Q 023822          105 LLSLHDNKYLRYFKGHHDRVVSLSLCSS------KDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVF  176 (276)
Q Consensus       105 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~------~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l  176 (276)
                      +||++ ++.+..+.+|...|.+++|.|.      +..+++++.|+.|++||+++.+....+  +...+.+++|+|++++|
T Consensus       133 vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l  211 (319)
T 3frx_A          133 VWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLI  211 (319)
T ss_dssp             EEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEE
T ss_pred             EEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEE
Confidence            99996 4567788899999999999985      448999999999999999998887777  56678899999999998


Q ss_pred             EEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecC-----CCC
Q 023822          177 AVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK-----PVS  250 (276)
Q Consensus       177 ~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~  250 (276)
                      ++++ |+.|++||+++.+.    ...+. +..++.+++|+|++.+|++++.+ .+++|++..+..+..+...     ..+
T Consensus       212 ~s~~~dg~i~iwd~~~~~~----~~~~~-~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~  285 (319)
T 3frx_A          212 ASAGKDGEIMLWNLAAKKA----MYTLS-AQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAA  285 (319)
T ss_dssp             EEEETTCEEEEEETTTTEE----EEEEE-CCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGG
T ss_pred             EEEeCCCeEEEEECCCCcE----EEEec-CCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCc
Confidence            8887 89999999987553    33343 34689999999999999888755 5999999888777766421     124


Q ss_pred             CCceEEEEECCCCcEEEEecCCCCC
Q 023822          251 RNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       251 ~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      ...+.+++|+|||++|++|+.||+|
T Consensus       286 ~~~v~~~~~spdg~~l~sg~~Dg~i  310 (319)
T 3frx_A          286 EPHAVSLAWSADGQTLFAGYTDNVI  310 (319)
T ss_dssp             CCCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CcceeEEEECCCCCEEEEeecCceE
Confidence            5678999999999999999999986

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=4.7e-42  Score=269.29  Aligned_cols=242  Identities=17%  Similarity=0.275  Sum_probs=213.5

Q ss_pred             cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i  103 (276)
                      .+....+.+|...|.+++|+|++++|++++.|+.|++||+.+++++..+..|...|.++.|+|+++.+++++.   |+.|
T Consensus        55 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---d~~i  131 (312)
T 4ery_A           55 GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF---DESV  131 (312)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEET---TSCE
T ss_pred             cccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeC---CCcE
Confidence            3455678899999999999999999999999999999999999999999999999999999999999999998   9999


Q ss_pred             EEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE---eecCCCeeEecCCCcEEEEee
Q 023822          104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL---RVQGRPAAAYDDQGLVFAVAF  180 (276)
Q Consensus       104 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~  180 (276)
                      ++||+++++.+..+..|...|.+++|+|++++|++++.|+.|++||+++++....+   +...+..++|+|++++++++.
T Consensus       132 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  211 (312)
T 4ery_A          132 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT  211 (312)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEE
T ss_pred             EEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEc
Confidence            99999999999999999999999999999999999999999999999998877766   233466899999999888887


Q ss_pred             -CCeEEEEecccCCCCCeeeeeecCCCCCc---eEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEE
Q 023822          181 -GGYIRMFDARKYEKGPFDIFSVGGDISDA---NVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE  256 (276)
Q Consensus       181 -d~~i~~~d~~~~~~~~~~~~~~~~~~~~i---~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~  256 (276)
                       |+.|++||+++++.    ...+..|....   ......+++++|++|+.||.|++||+.+++.+..+.   +|...|.+
T Consensus       212 ~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~---~h~~~v~~  284 (312)
T 4ery_A          212 LDNTLKLWDYSKGKC----LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ---GHTDVVIS  284 (312)
T ss_dssp             TTTEEEEEETTTTEE----EEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEEC---CCSSCEEE
T ss_pred             CCCeEEEEECCCCcE----EEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhh---ccCCcEEE
Confidence             89999999987553    44444554433   233344678999999999999999999999999998   78999999


Q ss_pred             EEECCCCcEEEEec--CCCCC
Q 023822          257 ASFSPEGMFVISGR--VSPFS  275 (276)
Q Consensus       257 ~~~s~~g~~l~~~~--~dg~v  275 (276)
                      ++|+|++++|++++  .|++|
T Consensus       285 ~~~~p~~~~l~s~~~~~d~~i  305 (312)
T 4ery_A          285 TACHPTENIIASAALENDKTI  305 (312)
T ss_dssp             EEECSSSSEEEEEECTTTCCE
T ss_pred             EeecCcCCceEEEEccCCccE
Confidence            99999999999986  57765

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.6e-42  Score=273.46  Aligned_cols=241  Identities=12%  Similarity=0.157  Sum_probs=199.3

Q ss_pred             ccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceE
Q 023822           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (276)
Q Consensus        25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~  104 (276)
                      .+...+.+|...|.+++|+|++.+|++++.|++|++||+.+++.+..+.+|...|.+++|+|+++++++++.   |+.|+
T Consensus        67 ~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~---d~~i~  143 (343)
T 2xzm_R           67 IPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA---EREIK  143 (343)
T ss_dssp             EEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEET---TSCEE
T ss_pred             cccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcC---CCEEE
Confidence            345678899999999999999999999999999999999999999999999999999999999999999998   99999


Q ss_pred             EEEccCCceeeee---cccCcceEEEEeccCC----------CEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEe
Q 023822          105 LLSLHDNKYLRYF---KGHHDRVVSLSLCSSK----------DCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAY  169 (276)
Q Consensus       105 ~~d~~~~~~~~~~---~~~~~~i~~~~~~~~~----------~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~  169 (276)
                      +||+.... ....   ..|...|.+++|+|++          .+|++++.|+.|++||.+ .+....+  +...+.+++|
T Consensus       144 ~wd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~h~~~v~~~~~  221 (343)
T 2xzm_R          144 LWNILGEC-KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHLSI  221 (343)
T ss_dssp             EEESSSCE-EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEECCSSCEEEEEE
T ss_pred             EEeccCCc-eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEcCccccceEEEE
Confidence            99997433 3222   3688999999999987          789999999999999944 4444444  5556789999


Q ss_pred             cCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEE--Eeec
Q 023822          170 DDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS--TYNV  246 (276)
Q Consensus       170 ~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~  246 (276)
                      +|++++|++++ |+.|++||++.....   ...+ .+...|.+++|+|++++++++ .|+.|++||+.+++...  .+..
T Consensus       222 s~~g~~l~sgs~dg~v~iwd~~~~~~~---~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~  296 (343)
T 2xzm_R          222 SPNGKYIATGGKDKKLLIWDILNLTYP---QREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEA  296 (343)
T ss_dssp             CTTSSEEEEEETTCEEEEEESSCCSSC---SEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCC
T ss_pred             CCCCCEEEEEcCCCeEEEEECCCCccc---ceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeec
Confidence            99999988887 999999999654321   1111 234579999999999877655 67789999998876544  3321


Q ss_pred             --------CCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          247 --------KPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       247 --------~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                              ..+|...|.+++|+|+|++|++|+.||+|
T Consensus       297 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v  333 (343)
T 2xzm_R          297 EPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVI  333 (343)
T ss_dssp             CSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEE
T ss_pred             CcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceE
Confidence                    11477889999999999999999999976

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=9.6e-42  Score=270.99  Aligned_cols=238  Identities=16%  Similarity=0.225  Sum_probs=200.3

Q ss_pred             ccccceeeccCCCcEEEEEE-----cC-CCCEEEEeecCCeEEEEEccC-------CeeeeeeeeeeeceEEEEEeccCC
Q 023822           23 SMEVGMSFRDYNGRISSMDF-----HK-SSSYLVTASDDESIRLYDVTA-------ATCLKTINSKKYGVDLVCFTSHPT   89 (276)
Q Consensus        23 ~~~~~~~~~~h~~~v~~~~~-----~~-~~~~l~~~~~d~~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~   89 (276)
                      .++....+++|.+.|++++|     ++ ++++|++|+.|++|++||+.+       +.+...+.+|...|.+++|+|++.
T Consensus        10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~   89 (343)
T 2xzm_R           10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC   89 (343)
T ss_dssp             EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT
T ss_pred             EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC
Confidence            34556789999999999999     76 899999999999999999874       345677889999999999999999


Q ss_pred             eEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE----eecCCC
Q 023822           90 TVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL----RVQGRP  165 (276)
Q Consensus        90 ~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~~~~  165 (276)
                      ++++++.   |+.|++||+++++.+..+.+|...|.+++|+|++++|++++.|++|++||+.........    +...+.
T Consensus        90 ~l~s~s~---D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~  166 (343)
T 2xzm_R           90 FAISSSW---DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVS  166 (343)
T ss_dssp             EEEEEET---TSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEE
T ss_pred             EEEEEcC---CCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceee
Confidence            9999998   999999999999999999999999999999999999999999999999999854332222    344567


Q ss_pred             eeEecCCC----------cEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEE
Q 023822          166 AAAYDDQG----------LVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD  234 (276)
Q Consensus       166 ~~~~~~~~----------~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  234 (276)
                      +++|+|++          .++++++ |+.|++||...     .....+..|...|.+++|+|+|++|++|+.||.|++||
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd  241 (343)
T 2xzm_R          167 CVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-----QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWD  241 (343)
T ss_dssp             EEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-----EEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred             eeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-----ceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEE
Confidence            89999876          5666665 99999999432     12455678889999999999999999999999999999


Q ss_pred             CC-CCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCC
Q 023822          235 SF-RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVS  272 (276)
Q Consensus       235 ~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  272 (276)
                      +. .......+.    +...|.+++|+|++++|++++.+
T Consensus       242 ~~~~~~~~~~~~----~~~~v~~v~~sp~~~~la~~~d~  276 (343)
T 2xzm_R          242 ILNLTYPQREFD----AGSTINQIAFNPKLQWVAVGTDQ  276 (343)
T ss_dssp             SSCCSSCSEEEE----CSSCEEEEEECSSSCEEEEEESS
T ss_pred             CCCCcccceeec----CCCcEEEEEECCCCCEEEEECCC
Confidence            94 444444443    45679999999999988876543

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.9e-42  Score=271.23  Aligned_cols=244  Identities=16%  Similarity=0.250  Sum_probs=197.8

Q ss_pred             hccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCC--eeeeee-ee-eeeceEEEEEeccCCeEEEeccC
Q 023822           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA--TCLKTI-NS-KKYGVDLVCFTSHPTTVIYSSKN   97 (276)
Q Consensus        22 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~~   97 (276)
                      ..++....+++|.++|.+++|+|+  +|++|+.|++|++||+..+  +....+ .. |...|.+++|+|++++|++++. 
T Consensus         2 ~~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~-   78 (330)
T 2hes_X            2 ASINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF-   78 (330)
T ss_dssp             -CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEET-
T ss_pred             cccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeC-
Confidence            345677889999999999999987  9999999999999999875  445555 34 8889999999999999999998 


Q ss_pred             CCCCceEEEEccC-------CceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCc----eeeeeE--eecCC
Q 023822           98 GWDESLRLLSLHD-------NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE----KCQGLL--RVQGR  164 (276)
Q Consensus        98 ~~d~~i~~~d~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~--~~~~~  164 (276)
                        |+.|++||+..       .+.+..+.+|...|.+++|+|++++|++++.|++|++||++..    +++..+  +...+
T Consensus        79 --D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v  156 (330)
T 2hes_X           79 --DSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDV  156 (330)
T ss_dssp             --TSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCE
T ss_pred             --CCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCce
Confidence              99999999853       3456778899999999999999999999999999999999532    344444  45567


Q ss_pred             CeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCC--CcEEEEeecCCcEEEEECCCC---
Q 023822          165 PAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND--GRLMLLTTMEGHIHVLDSFRG---  238 (276)
Q Consensus       165 ~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~---  238 (276)
                      .+++|+|++.+|++++ |+.|++||.+....  .....+.+|...|.+++|+|+  +.+|++++.|+.|++||+.++   
T Consensus       157 ~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~  234 (330)
T 2hes_X          157 KHVIWHPSEALLASSSYDDTVRIWKDYDDDW--ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDED  234 (330)
T ss_dssp             EEEEECSSSSEEEEEETTSCEEEEEEETTEE--EEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTT
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCCCCe--eEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcc
Confidence            8999999999888887 99999999876421  225567789999999999998  778999999999999998654   


Q ss_pred             -----cEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          239 -----TLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       239 -----~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                           .....+..  .|...|.+++|++++ +|++++.||+|
T Consensus       235 ~~~~~~~~~~~~~--~h~~~v~~v~~s~~~-~l~s~~~dg~v  273 (330)
T 2hes_X          235 DQQEWVCEAILPD--VHKRQVYNVAWGFNG-LIASVGADGVL  273 (330)
T ss_dssp             SCEEEEEEEECCS--CCSSCEEEEEECTTS-CEEEEETTSCE
T ss_pred             ccceeEEeeeccc--ccccceEEEEEcCCC-EEEEEeCCCEE
Confidence                 23333331  388999999999765 89999999975

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=6e-43  Score=274.84  Aligned_cols=241  Identities=12%  Similarity=0.087  Sum_probs=195.4

Q ss_pred             eeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCe--eeeeeeeeeeceEEEEEec--cCCeEEEeccCCCCCce
Q 023822           28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTS--HPTTVIYSSKNGWDESL  103 (276)
Q Consensus        28 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~~d~~i  103 (276)
                      ..+.+|.++|++++|+|++++||+|+.|++|+|||+.+++  .+..+.+|..+|.+++|++  +++.|++++.   |+.|
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~---D~~v   83 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSY---DRKV   83 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEET---TSCE
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEEC---CCEE
Confidence            3467899999999999999999999999999999998775  4677889999999999986  4889999998   9999


Q ss_pred             EEEEccCCc--eeeeecccCcceEEEEeccC--CCEEEEeeCCCeEEEEeccCcee---eeeE--eecCCCeeEecCC--
Q 023822          104 RLLSLHDNK--YLRYFKGHHDRVVSLSLCSS--KDCFISGSLDRTVLLWDQRAEKC---QGLL--RVQGRPAAAYDDQ--  172 (276)
Q Consensus       104 ~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~---~~~~--~~~~~~~~~~~~~--  172 (276)
                      ++||+++++  ....+.+|...|.+++|+|+  +.+|++++.|+.|++||++....   ...+  +...+.+++|+|+  
T Consensus        84 ~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  163 (316)
T 3bg1_A           84 IIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVV  163 (316)
T ss_dssp             EEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCC
T ss_pred             EEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccC
Confidence            999998874  56677889999999999998  78999999999999999987632   2222  4556778999987  


Q ss_pred             ---------------CcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCC----cEEEEeecCCcEEE
Q 023822          173 ---------------GLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG----RLMLLTTMEGHIHV  232 (276)
Q Consensus       173 ---------------~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~i  232 (276)
                                     +.+|++++ |+.|++||++.... ......+.+|...|.+++|+|++    ++|++++.|++|++
T Consensus       164 ~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~-~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~i  242 (316)
T 3bg1_A          164 PGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ-WKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFI  242 (316)
T ss_dssp             C------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC-EEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEE
T ss_pred             CccccccccccCccccceEEEecCCCeEEEEEeCCCCc-cceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEE
Confidence                           35666666 99999999975321 12245667899999999999986    88999999999999


Q ss_pred             EECCCCc----EEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          233 LDSFRGT----LLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       233 ~d~~~~~----~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      |++.+..    ....+.   .|...|.+++|+|+|++|++++.||+|
T Consensus       243 w~~~~~~~~~~~~~~~~---~~~~~v~~v~~sp~g~~las~~~D~~v  286 (316)
T 3bg1_A          243 WTCDDASSNTWSPKLLH---KFNDVVWHVSWSITANILAVSGGDNKV  286 (316)
T ss_dssp             EECSSTTCCCCBCCEEE---ECSSCEEEEEECTTTCCEEEEESSSCE
T ss_pred             EEccCccccchhhhhhh---cCCCcEEEEEEcCCCCEEEEEcCCCeE
Confidence            9987631    122334   478899999999999999999999986

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=6.7e-42  Score=276.66  Aligned_cols=237  Identities=21%  Similarity=0.325  Sum_probs=201.3

Q ss_pred             cCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeee------------------ceEEEEEeccCCeEEE
Q 023822           32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKY------------------GVDLVCFTSHPTTVIY   93 (276)
Q Consensus        32 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~------------------~v~~~~~~~~~~~l~~   93 (276)
                      +|.+.|.+++|+|+|++||+++ ++.+++|++.+++.+..+..+..                  .|.+++|+|+++++++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            6999999999999999999986 68999999999988877765432                  3899999999999999


Q ss_pred             eccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE-eecCCCeeEecC-
Q 023822           94 SSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-RVQGRPAAAYDD-  171 (276)
Q Consensus        94 ~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~-  171 (276)
                      ++.   |+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||++++++...+ ....+..++++| 
T Consensus       141 ~~~---d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~  217 (393)
T 1erj_A          141 GAE---DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPG  217 (393)
T ss_dssp             EET---TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECST
T ss_pred             EcC---CCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECC
Confidence            998   999999999999999999999999999999999999999999999999999999887776 445677899999 


Q ss_pred             CCcEEEEee-CCeEEEEecccCCCCCee---eeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCC---------
Q 023822          172 QGLVFAVAF-GGYIRMFDARKYEKGPFD---IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG---------  238 (276)
Q Consensus       172 ~~~~l~~~~-d~~i~~~d~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---------  238 (276)
                      ++.++++++ |+.|++||++++......   .....+|...|.+++|+|+|++|++++.|+.|++||+.+.         
T Consensus       218 ~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  297 (393)
T 1erj_A          218 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP  297 (393)
T ss_dssp             TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------
T ss_pred             CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCC
Confidence            888888777 999999999875421000   0112468889999999999999999999999999998763         


Q ss_pred             ---cEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          239 ---TLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       239 ---~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                         .+...+.   +|...|.+++|+|++++|++|+.||.|
T Consensus       298 ~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~sgs~D~~v  334 (393)
T 1erj_A          298 NSGTCEVTYI---GHKDFVLSVATTQNDEYILSGSKDRGV  334 (393)
T ss_dssp             ---CEEEEEE---CCSSCEEEEEECGGGCEEEEEETTSEE
T ss_pred             CCCcceEEEe---cccCcEEEEEECCCCCEEEEEeCCCeE
Confidence               3344555   688999999999999999999999875

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3e-42  Score=293.39  Aligned_cols=246  Identities=14%  Similarity=0.189  Sum_probs=205.7

Q ss_pred             ccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeee-------eeeeceEEEEEeccCCeEEEec
Q 023822           23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN-------SKKYGVDLVCFTSHPTTVIYSS   95 (276)
Q Consensus        23 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~   95 (276)
                      ..+....+.+|.+.|.+++|+|++++|++++.|++|++||+.+++++..+.       .|...|.+++|+|++++|++++
T Consensus       179 ~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s  258 (611)
T 1nr0_A          179 PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS  258 (611)
T ss_dssp             TBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEE
T ss_pred             CCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEe
Confidence            345567889999999999999999999999999999999999998888874       7899999999999999999999


Q ss_pred             cCCCCCceEEEEccCCceee-------------------------------------------eecccCcceEEEEeccC
Q 023822           96 KNGWDESLRLLSLHDNKYLR-------------------------------------------YFKGHHDRVVSLSLCSS  132 (276)
Q Consensus        96 ~~~~d~~i~~~d~~~~~~~~-------------------------------------------~~~~~~~~i~~~~~~~~  132 (276)
                      .   |+.|++||+.+++.+.                                           .+.+|...|.+++|+|+
T Consensus       259 ~---D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spd  335 (611)
T 1nr0_A          259 A---DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSAD  335 (611)
T ss_dssp             T---TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             C---CCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCC
Confidence            8   9999999998765433                                           33578899999999999


Q ss_pred             CCEEEEeeCCCeEEEEeccCceeeeeE-----------------------------------------------------
Q 023822          133 KDCFISGSLDRTVLLWDQRAEKCQGLL-----------------------------------------------------  159 (276)
Q Consensus       133 ~~~l~~~~~d~~i~iwd~~~~~~~~~~-----------------------------------------------------  159 (276)
                      +++|++++.|++|++||+.+++....+                                                     
T Consensus       336 g~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~  415 (611)
T 1nr0_A          336 GKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPL  415 (611)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEE
T ss_pred             CCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCc
Confidence            999999999999999998865432211                                                     


Q ss_pred             -------------------------------eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCC
Q 023822          160 -------------------------------RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDIS  207 (276)
Q Consensus       160 -------------------------------~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~  207 (276)
                                                     +...+.+++|+|+++++++++ |+.|++||+.....   .......|..
T Consensus       416 ~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~---~~~~~~~h~~  492 (611)
T 1nr0_A          416 GLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV---SEVKTIVHPA  492 (611)
T ss_dssp             EEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEE---EEEEEEECSS
T ss_pred             EEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCce---eeeeccCCCC
Confidence                                           001234688999999999888 89999999976431   1112256888


Q ss_pred             CceEEEECCCCcEEEEeecCCcEEEEECCC-CcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          208 DANVVKFSNDGRLMLLTTMEGHIHVLDSFR-GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       208 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      .|++++|+|+|++|++++.|+.|++|++.+ ++++.... ...|...|.+++|+|||++|++|+.|++|
T Consensus       493 ~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~-~~~H~~~V~~v~fspdg~~lasgs~D~~v  560 (611)
T 1nr0_A          493 EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNS-WTFHTAKVACVSWSPDNVRLATGSLDNSV  560 (611)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCC-CCCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeee-eeecccceeEEEECCCCCEEEEEECCCcE
Confidence            999999999999999999999999999987 55544311 11489999999999999999999999986

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.5e-41  Score=274.66  Aligned_cols=234  Identities=15%  Similarity=0.211  Sum_probs=205.5

Q ss_pred             CcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCcee
Q 023822           35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL  114 (276)
Q Consensus        35 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~  114 (276)
                      ..|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|+++.+++++.   |+.|++||+++++..
T Consensus       124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~---d~~v~iwd~~~~~~~  200 (393)
T 1erj_A          124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG---DRTVRIWDLRTGQCS  200 (393)
T ss_dssp             CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET---TSEEEEEETTTTEEE
T ss_pred             eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecC---CCcEEEEECCCCeeE
Confidence            35999999999999999999999999999999999999999999999999999999999998   999999999999887


Q ss_pred             eeecccCcceEEEEecc-CCCEEEEeeCCCeEEEEeccCceeeeeE---------eecCCCeeEecCCCcEEEEee-CCe
Q 023822          115 RYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLL---------RVQGRPAAAYDDQGLVFAVAF-GGY  183 (276)
Q Consensus       115 ~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~-d~~  183 (276)
                      ..+. +...+.+++|+| ++++|++++.|+.|++||+++++....+         +...+.+++|+|+++++++++ |+.
T Consensus       201 ~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~  279 (393)
T 1erj_A          201 LTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS  279 (393)
T ss_dssp             EEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             EEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence            7776 667799999999 8999999999999999999998776655         334577899999999888887 999


Q ss_pred             EEEEecccCCCC--------CeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceE
Q 023822          184 IRMFDARKYEKG--------PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTL  255 (276)
Q Consensus       184 i~~~d~~~~~~~--------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  255 (276)
                      |++||++.....        ......+.+|...|.+++|+|++++|++|+.|+.|++||..+++.+..+.   +|...|.
T Consensus       280 v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~---~h~~~v~  356 (393)
T 1erj_A          280 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ---GHRNSVI  356 (393)
T ss_dssp             EEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE---CCSSCEE
T ss_pred             EEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC---CCCCCEE
Confidence            999999864321        11234556788899999999999999999999999999999999999998   7999999


Q ss_pred             EEEECC------CCcEEEEecCCCCC
Q 023822          256 EASFSP------EGMFVISGRVSPFS  275 (276)
Q Consensus       256 ~~~~s~------~g~~l~~~~~dg~v  275 (276)
                      +++|++      ++++|++|+.||+|
T Consensus       357 ~v~~~~~~~~~p~~~~l~sgs~Dg~i  382 (393)
T 1erj_A          357 SVAVANGSSLGPEYNVFATGSGDCKA  382 (393)
T ss_dssp             EEEECSSCTTCTTCEEEEEEETTSEE
T ss_pred             EEEecCCcCcCCCCCEEEEECCCCcE
Confidence            999986      78999999999975

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.8e-41  Score=288.61  Aligned_cols=246  Identities=16%  Similarity=0.152  Sum_probs=209.2

Q ss_pred             cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCe--eeeeeeeeeeceEEEEEeccCCeEEEeccCC-CC
Q 023822           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNG-WD  100 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~d  100 (276)
                      .+....+.+|...|++++|+|+|++||+|+.|++|+|||+.+++  ....+..|..+|.+++|+|+++.+++++.+. ..
T Consensus        49 ~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~  128 (611)
T 1nr0_A           49 LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERF  128 (611)
T ss_dssp             SSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCS
T ss_pred             cccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCce
Confidence            45567789999999999999999999999999999999997543  4557788999999999999999999887521 01


Q ss_pred             CceEEEEccCCceeeeecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEE
Q 023822          101 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFA  177 (276)
Q Consensus       101 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~  177 (276)
                      +.|++||  .++....+.+|...|.+++|+|++. .|++++.|++|++||.++.+....+  |...+.+++|+|++++|+
T Consensus       129 ~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~la  206 (611)
T 1nr0_A          129 GHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFA  206 (611)
T ss_dssp             EEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             eEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEE
Confidence            4677776  5666778899999999999999987 6999999999999999998888777  555688999999999888


Q ss_pred             Eee-CCeEEEEecccCCCCCeeeeeec-------CCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeec---
Q 023822          178 VAF-GGYIRMFDARKYEKGPFDIFSVG-------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV---  246 (276)
Q Consensus       178 ~~~-d~~i~~~d~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---  246 (276)
                      +++ |+.|++||+++++.    ...+.       +|...|.+++|+|+|++|++++.|+.|++||+.+++++..+..   
T Consensus       207 s~s~D~~i~lwd~~~g~~----~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~  282 (611)
T 1nr0_A          207 STGGDGTIVLYNGVDGTK----TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR  282 (611)
T ss_dssp             EEETTSCEEEEETTTCCE----EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             EEECCCcEEEEECCCCcE----eeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCC
Confidence            887 99999999987553    22221       6889999999999999999999999999999998877654421   


Q ss_pred             -------------------------------------CCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          247 -------------------------------------KPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       247 -------------------------------------~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                                                           ..+|...|++++|+|+|++|++++.||+|
T Consensus       283 ~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v  348 (611)
T 1nr0_A          283 IEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHI  348 (611)
T ss_dssp             GGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcE
Confidence                                                 12688899999999999999999999975

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.1e-42  Score=274.08  Aligned_cols=246  Identities=12%  Similarity=0.082  Sum_probs=210.9

Q ss_pred             cceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEcc--CCeeeeeeeeeeeceEEEEEecc--CCeEEEeccCCCCC
Q 023822           26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVT--AATCLKTINSKKYGVDLVCFTSH--PTTVIYSSKNGWDE  101 (276)
Q Consensus        26 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~~d~  101 (276)
                      +...+++|.++|++++|+|++++|++++.||.|++||+.  +++.+..+..|...|.+++|+++  ++++++++.   |+
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg   79 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY---DG   79 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET---TS
T ss_pred             ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEecc---CC
Confidence            456789999999999999999999999999999999998  66778888999999999999977  899999998   99


Q ss_pred             ceEEEEccCCc--eeeeecccCcceEEEEeccC--CCEEEEeeCCCeEEEEeccCceeeeeE----eecCCCeeEecC--
Q 023822          102 SLRLLSLHDNK--YLRYFKGHHDRVVSLSLCSS--KDCFISGSLDRTVLLWDQRAEKCQGLL----RVQGRPAAAYDD--  171 (276)
Q Consensus       102 ~i~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~--  171 (276)
                      .|++||+.+++  ....+..|...|.+++|+|+  +++|++++.|+.|++||++........    +...+.+++|+|  
T Consensus        80 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  159 (379)
T 3jrp_A           80 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT  159 (379)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC
T ss_pred             EEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcc
Confidence            99999999987  67778889999999999999  899999999999999999987443332    445677999999  


Q ss_pred             -----------CCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCC---CcEEEEeecCCcEEEEECC
Q 023822          172 -----------QGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND---GRLMLLTTMEGHIHVLDSF  236 (276)
Q Consensus       172 -----------~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~  236 (276)
                                 ++.++++++ |+.|++||++...........+..|...|.+++|+|+   +++|++++.||.|++||+.
T Consensus       160 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~  239 (379)
T 3jrp_A          160 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD  239 (379)
T ss_dssp             ----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred             ccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence                       577777776 9999999998766433345567789999999999999   8999999999999999998


Q ss_pred             CCcE---EEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          237 RGTL---LSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       237 ~~~~---~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      ++..   ...+. ...+...|.+++|+|+|++|++++.||.+
T Consensus       240 ~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~~~~~dg~i  280 (379)
T 3jrp_A          240 NEQGPWKKTLLK-EEKFPDVLWRASWSLSGNVLALSGGDNKV  280 (379)
T ss_dssp             STTSCCEEEESS-SSCCSSCEEEEEECSSSCCEEEEESSSSE
T ss_pred             CCCccceeeeec-cccCCCcEEEEEEcCCCCEEEEecCCCcE
Confidence            8742   22222 12478899999999999999999999975

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-41  Score=268.47  Aligned_cols=244  Identities=14%  Similarity=0.187  Sum_probs=192.3

Q ss_pred             cceee-cc-CCCcEEEEEEcCCCCEEEEeecCCeEEEEEccC-------CeeeeeeeeeeeceEEEEEeccCCeEEEecc
Q 023822           26 VGMSF-RD-YNGRISSMDFHKSSSYLVTASDDESIRLYDVTA-------ATCLKTINSKKYGVDLVCFTSHPTTVIYSSK   96 (276)
Q Consensus        26 ~~~~~-~~-h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   96 (276)
                      ....+ .+ |.++|.+++|+|++++|++++.|++|++||+..       .+.+..+.+|...|.+++|+|++++|++++.
T Consensus        48 ~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~  127 (330)
T 2hes_X           48 LIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSR  127 (330)
T ss_dssp             EEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEET
T ss_pred             EEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeC
Confidence            33444 34 999999999999999999999999999999853       3567778899999999999999999999998


Q ss_pred             CCCCCceEEEEccCC----ceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCc--eeeeeE--eecCCCeeE
Q 023822           97 NGWDESLRLLSLHDN----KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE--KCQGLL--RVQGRPAAA  168 (276)
Q Consensus        97 ~~~d~~i~~~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~--~~~~~~~~~  168 (276)
                         |+.|++||++..    +.+..+.+|...|.+++|+|++++|++++.|++|++||++.+  +++..+  +...+.+++
T Consensus       128 ---D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~  204 (330)
T 2hes_X          128 ---DKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSD  204 (330)
T ss_dssp             ---TSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEE
T ss_pred             ---CCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEE
Confidence               999999999432    456778899999999999999999999999999999999876  455555  555678899


Q ss_pred             ecCC--CcEEEEee-CCeEEEEecccCCCCC----eeeeeecC-CCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcE
Q 023822          169 YDDQ--GLVFAVAF-GGYIRMFDARKYEKGP----FDIFSVGG-DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL  240 (276)
Q Consensus       169 ~~~~--~~~l~~~~-d~~i~~~d~~~~~~~~----~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  240 (276)
                      |+|+  +..+++++ |+.|++||++......    .....+.. |...|.+++|++++ +|++++.||.|++||..+++.
T Consensus       205 ~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~  283 (330)
T 2hes_X          205 FDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEW  283 (330)
T ss_dssp             ECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEE
T ss_pred             ecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCce
Confidence            9998  66666666 9999999997643211    11222333 78899999999776 799999999999999987743


Q ss_pred             --EEEeecCCCCCC-ceEEEEECC--CCcEEEEecCCCCC
Q 023822          241 --LSTYNVKPVSRN-STLEASFSP--EGMFVISGRVSPFS  275 (276)
Q Consensus       241 --~~~~~~~~~~~~-~v~~~~~s~--~g~~l~~~~~dg~v  275 (276)
                        .....  .+|.. .|.+++|+|  ++++|++|+.||+|
T Consensus       284 ~~~~~~~--~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v  321 (330)
T 2hes_X          284 KVFAKRA--LCHGVYEINVVKWLELNGKTILATGGDDGIV  321 (330)
T ss_dssp             EEEEEES--CTTTTSCEEEEEEC-----CCEEEEETTSEE
T ss_pred             EEEeccc--cccccceEEEEEEecCCCceEEEEecCCCcE
Confidence              22221  15666 899999999  78999999999976

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.6e-41  Score=267.26  Aligned_cols=243  Identities=14%  Similarity=0.160  Sum_probs=202.4

Q ss_pred             eccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCC--eeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEE
Q 023822           30 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA--TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS  107 (276)
Q Consensus        30 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d  107 (276)
                      ..+|...|.+++|+|++++|++|+.|+++++|++..+  +++..+.+|...|.+++|+|++++|++++.   |+.|++||
T Consensus        57 ~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~---D~~v~iwd  133 (345)
T 3fm0_A           57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSR---DKSVWVWE  133 (345)
T ss_dssp             CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEET---TSCEEEEE
T ss_pred             ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEEC---CCeEEEEE
Confidence            4689999999999999999999999999999998866  467788899999999999999999999998   99999999


Q ss_pred             ccCCc---eeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceee--eeE--eecCCCeeEecCCCcEEEEee
Q 023822          108 LHDNK---YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ--GLL--RVQGRPAAAYDDQGLVFAVAF  180 (276)
Q Consensus       108 ~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~--~~~~~~~~~~~~~~~~l~~~~  180 (276)
                      +.++.   .+..+..|...|.+++|+|++++|++++.|+.|++||++.++..  ..+  +...+.+++|+|++++|++++
T Consensus       134 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s  213 (345)
T 3fm0_A          134 VDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS  213 (345)
T ss_dssp             ECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEe
Confidence            98764   45677889999999999999999999999999999999887543  344  556678999999999888887


Q ss_pred             -CCeEEEEecccCCCCC-----------eeeeeec-CCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcE----EE-
Q 023822          181 -GGYIRMFDARKYEKGP-----------FDIFSVG-GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL----LS-  242 (276)
Q Consensus       181 -d~~i~~~d~~~~~~~~-----------~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~-  242 (276)
                       |+.|++||........           .....+. .|...|.+++|+|++..|++++.|+.|++|+...+..    .. 
T Consensus       214 ~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~  293 (345)
T 3fm0_A          214 DDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFS  293 (345)
T ss_dssp             TTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEE
T ss_pred             CCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEE
Confidence             9999999975432211           0111222 3778899999999999999999999999999875431    11 


Q ss_pred             -EeecCCCCCCceEEEEECCCC-cEEEEecCCCCC
Q 023822          243 -TYNVKPVSRNSTLEASFSPEG-MFVISGRVSPFS  275 (276)
Q Consensus       243 -~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v  275 (276)
                       ......+|...|++++|+|++ .+|++|+.||+|
T Consensus       294 ~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v  328 (345)
T 3fm0_A          294 LTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEV  328 (345)
T ss_dssp             EEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCE
T ss_pred             EEeeecccccCcEeEeEEeCCCceEEEEcCCCCcE
Confidence             111223689999999999998 599999999986

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.2e-41  Score=269.91  Aligned_cols=235  Identities=16%  Similarity=0.163  Sum_probs=189.6

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCC-----------eeeeeeeeeeeceEEEEEeccCCeEEEeccCCC
Q 023822           31 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA-----------TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW   99 (276)
Q Consensus        31 ~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~   99 (276)
                      ..|...|.+++|+|||++|++++ |+++++||....           ........+...|.+++|+|++ .+++++.   
T Consensus        27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~---  101 (344)
T 4gqb_B           27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASD---  101 (344)
T ss_dssp             SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEET---
T ss_pred             ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEEC---
Confidence            45778899999999999999887 677888873211           1111223355679999999985 6778887   


Q ss_pred             CCceEEEEccCCceeee----ecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCC
Q 023822          100 DESLRLLSLHDNKYLRY----FKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQG  173 (276)
Q Consensus       100 d~~i~~~d~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~  173 (276)
                      ||.|++||+.+++....    +.+|.+.|.+++|+|++++|++++.|++|++||+++++++..+  |...+.+++|+|++
T Consensus       102 dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~  181 (344)
T 4gqb_B          102 SGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHK  181 (344)
T ss_dssp             TSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSC
T ss_pred             CCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCC
Confidence            99999999998876543    3479999999999999999999999999999999999999888  55678899999987


Q ss_pred             -cEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCC-CcEEEEeecCCcEEEEECCCCcEEEEeecCCCC
Q 023822          174 -LVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS  250 (276)
Q Consensus       174 -~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  250 (276)
                       .++++++ |+.|++||+++++.  ........+...+.+++|+|+ +++|++|+.||.|++||+++++++..+.   +|
T Consensus       182 ~~~l~s~s~D~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~---~h  256 (344)
T 4gqb_B          182 DSVFLSCSEDNRILLWDTRCPKP--ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSA---VH  256 (344)
T ss_dssp             TTEEEEEETTSCEEEEETTSSSC--EEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEE---CC
T ss_pred             CCceeeeccccccccccccccce--eeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEc---CC
Confidence             4566555 99999999998664  222333445567899999995 5788999999999999999999999998   79


Q ss_pred             CCceEEEEECCCC-cEEEEecCCCCC
Q 023822          251 RNSTLEASFSPEG-MFVISGRVSPFS  275 (276)
Q Consensus       251 ~~~v~~~~~s~~g-~~l~~~~~dg~v  275 (276)
                      ...|++++|+|++ ++|++|+.||+|
T Consensus       257 ~~~v~~v~fsp~g~~~lasgs~D~~i  282 (344)
T 4gqb_B          257 SQCVTGLVFSPHSVPFLASLSEDCSL  282 (344)
T ss_dssp             SSCEEEEEECSSSSCCEEEEETTSCE
T ss_pred             CCCEEEEEEccCCCeEEEEEeCCCeE
Confidence            9999999999998 589999999976

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.4e-40  Score=263.60  Aligned_cols=251  Identities=18%  Similarity=0.249  Sum_probs=209.4

Q ss_pred             HHHhhccccceeeccCCCcEEEEEEcCC-CCEEEEeecCCeEEEEEccCC-----eeeeeeeeeeeceEEEEEeccCCeE
Q 023822           18 EEILQSMEVGMSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTAA-----TCLKTINSKKYGVDLVCFTSHPTTV   91 (276)
Q Consensus        18 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l   91 (276)
                      ....+++++..+|+||.+.|++++|+|+ +++|+||+.|++|+|||+.+.     .+...+.+|...|.+++|+|+++++
T Consensus        22 ~~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l  101 (340)
T 4aow_A           22 SMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFA  101 (340)
T ss_dssp             ----CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             EccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEE
Confidence            3344666777889999999999999997 689999999999999998754     3566778899999999999999999


Q ss_pred             EEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE---eecCCCeeE
Q 023822           92 IYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL---RVQGRPAAA  168 (276)
Q Consensus        92 ~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~  168 (276)
                      ++++.   |+.|++|+............+...+..+.+++++++|++++.|+.+++||+.........   +...+..++
T Consensus       102 ~s~~~---d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~  178 (340)
T 4aow_A          102 LSGSW---DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVR  178 (340)
T ss_dssp             EEEET---TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEE
T ss_pred             EEEcc---cccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceE
Confidence            99998   999999999999888888888899999999999999999999999999999876554333   445566788


Q ss_pred             ecCCC--cEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEee
Q 023822          169 YDDQG--LVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  245 (276)
Q Consensus       169 ~~~~~--~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  245 (276)
                      +++++  .+++++. |+.|++||+++.+.    ...+.+|..+|++++|+|++++|++++.||.|++||+.+.+.+..+.
T Consensus       179 ~~~~~~~~~~~s~~~d~~i~i~d~~~~~~----~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~  254 (340)
T 4aow_A          179 FSPNSSNPIIVSCGWDKLVKVWNLANCKL----KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD  254 (340)
T ss_dssp             ECSCSSSCEEEEEETTSCEEEEETTTTEE----EEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             EccCCCCcEEEEEcCCCEEEEEECCCCce----eeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeec
Confidence            87764  4555555 99999999987554    56677899999999999999999999999999999988776654432


Q ss_pred             cC----------------------------------------------CCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          246 VK----------------------------------------------PVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       246 ~~----------------------------------------------~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      ..                                              .+|...|++++|+|+|++|++|+.||+|
T Consensus       255 ~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v  330 (340)
T 4aow_A          255 GGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLV  330 (340)
T ss_dssp             CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEE
Confidence            11                                              1356778999999999999999999976

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=9.1e-42  Score=272.37  Aligned_cols=237  Identities=16%  Similarity=0.146  Sum_probs=190.3

Q ss_pred             eccCCCcEEEEEEcCCCCEEEEeec------CCeEEEEEccCCeeee----eeeeeeeceEEEEEeccCCeEEEeccCCC
Q 023822           30 FRDYNGRISSMDFHKSSSYLVTASD------DESIRLYDVTAATCLK----TINSKKYGVDLVCFTSHPTTVIYSSKNGW   99 (276)
Q Consensus        30 ~~~h~~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~~~~   99 (276)
                      ...|...|++++|+|||++||+++.      |+.|++|+..++....    ....|...|.+++|+|++..+ +++.   
T Consensus        38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l-~~s~---  113 (357)
T 4g56_B           38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGIL-VASD---  113 (357)
T ss_dssp             --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEE-EEET---
T ss_pred             cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEE-EEEC---
Confidence            4579999999999999999999997      7889999987765433    335677889999999998655 5555   


Q ss_pred             CCceEEEEccCCceee----eecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCC
Q 023822          100 DESLRLLSLHDNKYLR----YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQG  173 (276)
Q Consensus       100 d~~i~~~d~~~~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~  173 (276)
                      |+.|++||+.+++...    ...+|...|.+++|+|++++|++++.|+.|++||+++++.+..+  +...+.+++|+|++
T Consensus       114 dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~  193 (357)
T 4g56_B          114 SGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGK  193 (357)
T ss_dssp             TSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTC
T ss_pred             CCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCC
Confidence            9999999998876543    33479999999999999999999999999999999999988887  45667899999987


Q ss_pred             c-EEEE-eeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCC-CcEEEEeecCCcEEEEECCCCcEEEEeecCCCC
Q 023822          174 L-VFAV-AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS  250 (276)
Q Consensus       174 ~-~l~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  250 (276)
                      . ++++ +.|+.|++||+++++.  ........+...+.+++|+|+ +.+|++|+.|+.|++||+++++.+..+.   +|
T Consensus       194 ~~~~~s~~~dg~v~~wd~~~~~~--~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~---~~  268 (357)
T 4g56_B          194 DTIFLSCGEDGRILLWDTRKPKP--ATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA---VH  268 (357)
T ss_dssp             SSCEEEEETTSCEEECCTTSSSC--BCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC---CC
T ss_pred             CceeeeeccCCceEEEECCCCce--eeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe---cc
Confidence            3 4444 4499999999988654  223344556778999999997 4788999999999999999999999888   78


Q ss_pred             CCceEEEEECCCC-cEEEEecCCCCC
Q 023822          251 RNSTLEASFSPEG-MFVISGRVSPFS  275 (276)
Q Consensus       251 ~~~v~~~~~s~~g-~~l~~~~~dg~v  275 (276)
                      ...|++++|+|++ ++|++|+.||+|
T Consensus       269 ~~~v~~l~~sp~~~~~lasgs~D~~i  294 (357)
T 4g56_B          269 SQNITGLAYSYHSSPFLASISEDCTV  294 (357)
T ss_dssp             SSCEEEEEECSSSSCCEEEEETTSCE
T ss_pred             ceeEEEEEEcCCCCCEEEEEeCCCEE
Confidence            9999999999997 689999999976

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=5.5e-40  Score=259.69  Aligned_cols=232  Identities=16%  Similarity=0.264  Sum_probs=211.9

Q ss_pred             cCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCe--eeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEcc
Q 023822           32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH  109 (276)
Q Consensus        32 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~  109 (276)
                      +|...|.+++|+|++++|++++.|+.|++||+.+++  ....+..|...+.+++|+|+++.+++++.   |+.|++||++
T Consensus        95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~v~~~d~~  171 (337)
T 1gxr_A           95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS---DGNIAVWDLH  171 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET---TSCEEEEETT
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeC---CCcEEEEeCC
Confidence            799999999999999999999999999999999877  56677788889999999999999999998   9999999999


Q ss_pred             CCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee-CCeEEEE
Q 023822          110 DNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF-GGYIRMF  187 (276)
Q Consensus       110 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-d~~i~~~  187 (276)
                      +++....+..|...|.+++|+|++++|++++.|+.|++||+++++....+ +...+.+++|+|++.+++++. ++.|++|
T Consensus       172 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~  251 (337)
T 1gxr_A          172 NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVL  251 (337)
T ss_dssp             TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             CCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEE
Confidence            99999999999999999999999999999999999999999999888777 445677899999999888887 8999999


Q ss_pred             ecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEE
Q 023822          188 DARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVI  267 (276)
Q Consensus       188 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  267 (276)
                      |++..+     ......|...+.+++|+|++++|++++.||.|++||+.+++.+....    +...+.+++|+|++++|+
T Consensus       252 ~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~  322 (337)
T 1gxr_A          252 HVNKPD-----KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK----ESSSVLSCDISVDDKYIV  322 (337)
T ss_dssp             ETTSSC-----EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE----CSSCEEEEEECTTSCEEE
T ss_pred             ECCCCC-----eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEec----CCCcEEEEEECCCCCEEE
Confidence            998754     34566788899999999999999999999999999999999886655    788999999999999999


Q ss_pred             EecCCCCC
Q 023822          268 SGRVSPFS  275 (276)
Q Consensus       268 ~~~~dg~v  275 (276)
                      +++.||.+
T Consensus       323 ~~~~dg~i  330 (337)
T 1gxr_A          323 TGSGDKKA  330 (337)
T ss_dssp             EEETTSCE
T ss_pred             EecCCCeE
Confidence            99999975

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.2e-42  Score=279.46  Aligned_cols=239  Identities=12%  Similarity=0.080  Sum_probs=198.8

Q ss_pred             eeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCC--eeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEE
Q 023822           29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA--TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL  106 (276)
Q Consensus        29 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~  106 (276)
                      .++.|.++|++++|+|++++|++++.|+.|++||+.++  +.+..+..|...|.+++|+|++++|++++.   |+.|++|
T Consensus         6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~---d~~v~vw   82 (377)
T 3dwl_C            6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQ---DRNAYVY   82 (377)
T ss_dssp             EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEET---TSSEEEC
T ss_pred             eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeC---CCeEEEE
Confidence            34557789999999999999999999999999999988  788889999999999999999999999998   9999999


Q ss_pred             EccCCc---eeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCcee---eeeE---eecCCCeeEecCCCcEEE
Q 023822          107 SLHDNK---YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC---QGLL---RVQGRPAAAYDDQGLVFA  177 (276)
Q Consensus       107 d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~---~~~~~~~~~~~~~~~~l~  177 (276)
                      |+.+++   ....+..|...|.+++|+|++++|++++.|+.|++||++.++.   ...+   +...+.+++|+|++.+++
T Consensus        83 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  162 (377)
T 3dwl_C           83 EKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLA  162 (377)
T ss_dssp             ------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEE
T ss_pred             EcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEE
Confidence            999877   6677788999999999999999999999999999999998763   4444   455678999999998888


Q ss_pred             Eee-CCeEEEEecccCCCC--------------CeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcE--
Q 023822          178 VAF-GGYIRMFDARKYEKG--------------PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL--  240 (276)
Q Consensus       178 ~~~-d~~i~~~d~~~~~~~--------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--  240 (276)
                      +++ |+.|++||++.....              ......+ .|...|.+++|+|++++|++++.||.|++||+.+++.  
T Consensus       163 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~  241 (377)
T 3dwl_C          163 AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPP  241 (377)
T ss_dssp             EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCE
T ss_pred             EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcc
Confidence            877 899999998643211              1112233 7888999999999999999999999999999999987  


Q ss_pred             --EEEeecCCCCCCceEEEEECCCCcEEEEecCCCC
Q 023822          241 --LSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPF  274 (276)
Q Consensus       241 --~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~  274 (276)
                        +..+.   +|...|.+++|+|+|++|++|+.++.
T Consensus       242 ~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~~~~  274 (377)
T 3dwl_C          242 RALITVK---LSQLPLRSLLWANESAIVAAGYNYSP  274 (377)
T ss_dssp             EECCCEE---CSSSCEEEEEEEETTEEEEEESSSSE
T ss_pred             eeeEeec---CCCCceEEEEEcCCCCEEEEEcCCcE
Confidence              66777   68899999999999999999988775

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.6e-40  Score=281.17  Aligned_cols=235  Identities=20%  Similarity=0.342  Sum_probs=210.4

Q ss_pred             cceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEE
Q 023822           26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL  105 (276)
Q Consensus        26 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~  105 (276)
                      ....+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+..|...|.+++|+|+++++++++.   |+.|++
T Consensus       336 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~---d~~v~~  411 (577)
T 2ymu_A          336 HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASD---DKTVKL  411 (577)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEET---TSEEEE
T ss_pred             eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeC---CCEEEE
Confidence            34567889999999999999999999999999999995 67888889999999999999999999999998   999999


Q ss_pred             EEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-CC
Q 023822          106 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-GG  182 (276)
Q Consensus       106 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d~  182 (276)
                      ||. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||.. ++....+  +...+.+++|+|++++|+++. |+
T Consensus       412 ~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~  489 (577)
T 2ymu_A          412 WNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK  489 (577)
T ss_dssp             ECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTSCEEEEEETTS
T ss_pred             EeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence            995 567788899999999999999999999999999999999975 4445555  556678999999999998887 89


Q ss_pred             eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCC
Q 023822          183 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  262 (276)
Q Consensus       183 ~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~  262 (276)
                      .|++||... +    ....+.+|...|++++|+|+|++|++++.||.|++||. +++++..+.   +|.+.|++++|+||
T Consensus       490 ~i~iw~~~~-~----~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~---~h~~~v~~~~fs~d  560 (577)
T 2ymu_A          490 TVKLWNRNG-Q----LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT---GHSSSVWGVAFSPD  560 (577)
T ss_dssp             EEEEEETTS-C----EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE---CCSSCEEEEEECTT
T ss_pred             EEEEEcCCC-C----EEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc---CCCCCEEEEEEcCC
Confidence            999999642 2    25567789999999999999999999999999999995 788888888   79999999999999


Q ss_pred             CcEEEEecCCCCC
Q 023822          263 GMFVISGRVSPFS  275 (276)
Q Consensus       263 g~~l~~~~~dg~v  275 (276)
                      |++|++++.||+|
T Consensus       561 g~~l~s~~~D~~i  573 (577)
T 2ymu_A          561 GQTIASASSDKTV  573 (577)
T ss_dssp             SSCEEEEETTSCE
T ss_pred             CCEEEEEeCCCEE
Confidence            9999999999976

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=2e-40  Score=263.00  Aligned_cols=240  Identities=12%  Similarity=0.082  Sum_probs=205.2

Q ss_pred             eeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCC----eeeeeeeeeeeceEEEEEec--cCCeEEEeccCCCCC
Q 023822           28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA----TCLKTINSKKYGVDLVCFTS--HPTTVIYSSKNGWDE  101 (276)
Q Consensus        28 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~~d~  101 (276)
                      ..+.+|.+.|++++|+|++++|++++.||.|++||+.++    +....+..|...|.+++|+|  ++++|++++.   |+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~---dg   81 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASY---DK   81 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEET---TS
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcC---CC
Confidence            457899999999999999999999999999999999876    46677788999999999999  6999999998   99


Q ss_pred             ceEEEEccCC---------ceeeeecccCcceEEEEeccC--CCEEEEeeCCCeEEEEeccCceeeeeE-----------
Q 023822          102 SLRLLSLHDN---------KYLRYFKGHHDRVVSLSLCSS--KDCFISGSLDRTVLLWDQRAEKCQGLL-----------  159 (276)
Q Consensus       102 ~i~~~d~~~~---------~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~-----------  159 (276)
                      .|++||++++         +....+..|...|.+++|+|+  +++|++++.|+.|++||+++++....+           
T Consensus        82 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  161 (351)
T 3f3f_A           82 TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSI  161 (351)
T ss_dssp             CEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSC
T ss_pred             eEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccc
Confidence            9999999887         457778899999999999999  999999999999999999987655433           


Q ss_pred             ----eecCCCeeEecCC---CcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCC----cEEEEeecC
Q 023822          160 ----RVQGRPAAAYDDQ---GLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG----RLMLLTTME  227 (276)
Q Consensus       160 ----~~~~~~~~~~~~~---~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~d  227 (276)
                          +...+.++.|+|+   +.+++++. ++.+.+|+.....  ......+..|...|.+++|+|++    ++|++++.|
T Consensus       162 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~d  239 (351)
T 3f3f_A          162 PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK--LHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKD  239 (351)
T ss_dssp             CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC--EEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETT
T ss_pred             ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc--eeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCC
Confidence                2234668999996   77777777 7888777766533  22355667789999999999998    899999999


Q ss_pred             CcEEEEECCCC----------------------------------------------cEEEEeecCCCCCCceEEEEECC
Q 023822          228 GHIHVLDSFRG----------------------------------------------TLLSTYNVKPVSRNSTLEASFSP  261 (276)
Q Consensus       228 g~i~i~d~~~~----------------------------------------------~~~~~~~~~~~~~~~v~~~~~s~  261 (276)
                      |.|++||+.++                                              +.+..+.   +|...|++++|+|
T Consensus       240 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~s~  316 (351)
T 3f3f_A          240 GRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD---DHNGEVWSVSWNL  316 (351)
T ss_dssp             SCEEEEEEEECC---------------------------------------CCSEEEEEEEEEC---TTSSCEEEEEECS
T ss_pred             CeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEe---cccccEEEEEEcC
Confidence            99999999865                                              4555555   7889999999999


Q ss_pred             CCcEEEEecCCCCC
Q 023822          262 EGMFVISGRVSPFS  275 (276)
Q Consensus       262 ~g~~l~~~~~dg~v  275 (276)
                      ++++|++++.||.|
T Consensus       317 ~~~~l~s~~~dg~v  330 (351)
T 3f3f_A          317 TGTILSSAGDDGKV  330 (351)
T ss_dssp             SSCCEEEEETTSCE
T ss_pred             CCCEEEEecCCCcE
Confidence            99999999999975

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=2.1e-40  Score=265.03  Aligned_cols=247  Identities=17%  Similarity=0.230  Sum_probs=203.7

Q ss_pred             hhccccceeeccCCCcEEEEEEcCC---CCEEEEeecCCeEEEEEccC-Ceee-eeeeeeeeceEEEEEeccCCeEEEec
Q 023822           21 LQSMEVGMSFRDYNGRISSMDFHKS---SSYLVTASDDESIRLYDVTA-ATCL-KTINSKKYGVDLVCFTSHPTTVIYSS   95 (276)
Q Consensus        21 ~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~~~~~d~~i~iwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~   95 (276)
                      ...++....+.+|.+.|++++|+|+   |++|++|+.||.|++||+.+ ++.+ ..+..|...|.+++|+|++++|++++
T Consensus        26 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~  105 (368)
T 3mmy_A           26 HNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTAS  105 (368)
T ss_dssp             SCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEc
Confidence            3456677788999999999999998   69999999999999999987 5544 77888999999999999999999999


Q ss_pred             cCCCCCceEEEEccCCceeeeecccCcceEEEEe--ccCCCEEEEeeCCCeEEEEeccCceeeeeEeecC----------
Q 023822           96 KNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSL--CSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG----------  163 (276)
Q Consensus        96 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----------  163 (276)
                      .   |+.|++||+++++... +..|...|.+++|  +|++++|++++.|+.|++||+++++....+..+.          
T Consensus       106 ~---dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  181 (368)
T 3mmy_A          106 C---DKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYP  181 (368)
T ss_dssp             T---TSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETT
T ss_pred             C---CCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCC
Confidence            8   9999999999988766 5569999999999  8899999999999999999999887665543211          


Q ss_pred             ---------------------------------CCeeEecCCCc-----EEEEeeCCeEEEEecccCCCCCeeeeeecCC
Q 023822          164 ---------------------------------RPAAAYDDQGL-----VFAVAFGGYIRMFDARKYEKGPFDIFSVGGD  205 (276)
Q Consensus       164 ---------------------------------~~~~~~~~~~~-----~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~  205 (276)
                                                       ..++.+.++..     +++++.|+.|++||++.... ......+..|
T Consensus       182 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~-~~~~~~~~~~  260 (368)
T 3mmy_A          182 MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP-AKDNFTFKCH  260 (368)
T ss_dssp             EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCH-HHHSEEEECS
T ss_pred             eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCc-cccceeeeee
Confidence                                             11233322221     44444489999999987532 0113334444


Q ss_pred             CC------------CceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCC
Q 023822          206 IS------------DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       206 ~~------------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  273 (276)
                      ..            +|.+++|+|++++|++++.||.|++||+.+++++..+.   .|...|.+++|+|+|++|++++.|+
T Consensus       261 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~g~~l~~~s~d~  337 (368)
T 3mmy_A          261 RSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE---QLDQPISACCFNHNGNIFAYASSYD  337 (368)
T ss_dssp             EEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC---CCSSCEEEEEECTTSSCEEEEECCC
T ss_pred             ecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec---CCCCCceEEEECCCCCeEEEEeccc
Confidence            43            79999999999999999999999999999999999888   7899999999999999999999998


Q ss_pred             CC
Q 023822          274 FS  275 (276)
Q Consensus       274 ~v  275 (276)
                      +.
T Consensus       338 ~~  339 (368)
T 3mmy_A          338 WS  339 (368)
T ss_dssp             ST
T ss_pred             cc
Confidence            64

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=7.7e-40  Score=282.56  Aligned_cols=239  Identities=19%  Similarity=0.253  Sum_probs=207.8

Q ss_pred             cccceeeccCCCcEEEEEEcCC-CCEEEEeecCCeEEEEEccCC-----eeeeeeeeeeeceEEEEEeccCCeEEEeccC
Q 023822           24 MEVGMSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTAA-----TCLKTINSKKYGVDLVCFTSHPTTVIYSSKN   97 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~   97 (276)
                      ++....+++|.+.|++++|+|+ +++|++|+.|++|++|++.+.     .....+.+|...|.+++|+|+++++++++. 
T Consensus       372 l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~-  450 (694)
T 3dm0_A          372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSW-  450 (694)
T ss_dssp             SEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEET-
T ss_pred             cchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeC-
Confidence            4555678999999999999986 479999999999999998753     456678899999999999999999999998 


Q ss_pred             CCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE-----eecCCCeeEecCC
Q 023822           98 GWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-----RVQGRPAAAYDDQ  172 (276)
Q Consensus        98 ~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~  172 (276)
                        |+.|++||+.+++....+.+|...|.+++|+|++++|++++.|++|++||+.........     |...+.+++|+|+
T Consensus       451 --Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  528 (694)
T 3dm0_A          451 --DGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPN  528 (694)
T ss_dssp             --TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSC
T ss_pred             --CCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCC
Confidence              999999999999999999999999999999999999999999999999998765433322     3445779999998


Q ss_pred             C--cEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCC
Q 023822          173 G--LVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV  249 (276)
Q Consensus       173 ~--~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  249 (276)
                      +  ..+++++ |+.|++||+++.+.    ...+.+|...|++++|+|+|++|++++.||.|++||+.+++.+..+.    
T Consensus       529 ~~~~~l~s~s~d~~v~vwd~~~~~~----~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~----  600 (694)
T 3dm0_A          529 TLQPTIVSASWDKTVKVWNLSNCKL----RSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE----  600 (694)
T ss_dssp             SSSCEEEEEETTSCEEEEETTTCCE----EEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB----
T ss_pred             CCcceEEEEeCCCeEEEEECCCCcE----EEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec----
Confidence            6  4555555 99999999987553    56677899999999999999999999999999999999999988776    


Q ss_pred             CCCceEEEEECCCCcEEEEecCCC
Q 023822          250 SRNSTLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       250 ~~~~v~~~~~s~~g~~l~~~~~dg  273 (276)
                      +...|.+++|+|++.+|++++.++
T Consensus       601 ~~~~v~~~~~sp~~~~l~~~~~~~  624 (694)
T 3dm0_A          601 ANSVIHALCFSPNRYWLCAATEHG  624 (694)
T ss_dssp             CSSCEEEEEECSSSSEEEEEETTE
T ss_pred             CCCcEEEEEEcCCCcEEEEEcCCC
Confidence            457899999999999998887654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.1e-39  Score=286.17  Aligned_cols=242  Identities=18%  Similarity=0.287  Sum_probs=218.9

Q ss_pred             cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i  103 (276)
                      ++..+.+.+|.+.|.+++|+|++++|++++.||.|++||+.+++.+..+..|..+|.+++|+|+++.|++++.   |+.|
T Consensus         3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i   79 (814)
T 3mkq_A            3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD---DFRI   79 (814)
T ss_dssp             CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEET---TSEE
T ss_pred             cccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeC---CCeE
Confidence            4567889999999999999999999999999999999999999999999999999999999999999999998   9999


Q ss_pred             EEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCc-eeeeeE--eecCCCeeEecC-CCcEEEEe
Q 023822          104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE-KCQGLL--RVQGRPAAAYDD-QGLVFAVA  179 (276)
Q Consensus       104 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~--~~~~~~~~~~~~-~~~~l~~~  179 (276)
                      ++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||++++ .....+  +...+.+++|+| ++..++++
T Consensus        80 ~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~  159 (814)
T 3mkq_A           80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG  159 (814)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred             EEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEE
Confidence            99999999999999999999999999999999999999999999999987 555555  455678999999 77777777


Q ss_pred             e-CCeEEEEecccCCCCCeeeeee-cCCCCCceEEEECC--CCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceE
Q 023822          180 F-GGYIRMFDARKYEKGPFDIFSV-GGDISDANVVKFSN--DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTL  255 (276)
Q Consensus       180 ~-d~~i~~~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  255 (276)
                      + |+.|++||++....    .... ..+...+.+++|+|  ++++|++++.||.|++||+.+++.+..+.   +|...|.
T Consensus       160 ~~dg~v~vwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~---~~~~~v~  232 (814)
T 3mkq_A          160 CLDRTVKVWSLGQSTP----NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE---GHMSNVS  232 (814)
T ss_dssp             ETTSEEEEEETTCSSC----SEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEE---CCSSCEE
T ss_pred             eCCCeEEEEECCCCcc----eeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEc---CCCCCEE
Confidence            7 89999999987554    2222 33447899999999  99999999999999999999999999988   7889999


Q ss_pred             EEEECCCCcEEEEecCCCCC
Q 023822          256 EASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       256 ~~~~s~~g~~l~~~~~dg~v  275 (276)
                      +++|+|++++|++++.||.|
T Consensus       233 ~~~~~~~~~~l~~~~~dg~v  252 (814)
T 3mkq_A          233 FAVFHPTLPIIISGSEDGTL  252 (814)
T ss_dssp             EEEECSSSSEEEEEETTSCE
T ss_pred             EEEEcCCCCEEEEEeCCCeE
Confidence            99999999999999999975

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.3e-39  Score=259.59  Aligned_cols=239  Identities=13%  Similarity=0.143  Sum_probs=207.5

Q ss_pred             eccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCe--eeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEE
Q 023822           30 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS  107 (276)
Q Consensus        30 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d  107 (276)
                      +..|.++|++++|+|++++|++++.|+.|++||+.+++  .+..+..|...|.+++|+|+++++++++.   |+.|++||
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~---dg~i~vwd   80 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT---DRNAYVWT   80 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEET---TSCEEEEE
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcC---CCeEEEEE
Confidence            45689999999999999999999999999999999887  88889999999999999999999999998   99999999


Q ss_pred             ccCCceeee--ecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCcee---eeeE---eecCCCeeEecCCCcEEEEe
Q 023822          108 LHDNKYLRY--FKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC---QGLL---RVQGRPAAAYDDQGLVFAVA  179 (276)
Q Consensus       108 ~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~---~~~~~~~~~~~~~~~~l~~~  179 (276)
                      +.+++....  +..|...|.+++|+|++++|++++.|+.|++||++..+.   ...+   +...+.+++|+|++.+++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  160 (372)
T 1k8k_C           81 LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG  160 (372)
T ss_dssp             EETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEE
T ss_pred             CCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEE
Confidence            988875443  467899999999999999999999999999999998763   2222   35567899999999888887


Q ss_pred             e-CCeEEEEecccCC--------------CCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEe
Q 023822          180 F-GGYIRMFDARKYE--------------KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY  244 (276)
Q Consensus       180 ~-d~~i~~~d~~~~~--------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  244 (276)
                      . |+.|++||++...              ........+..|...+.+++|+|++++|++++.||.|++||+.+++.+..+
T Consensus       161 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  240 (372)
T 1k8k_C          161 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL  240 (372)
T ss_dssp             ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE
T ss_pred             cCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEE
Confidence            7 8999999975321              011224556678889999999999999999999999999999999999999


Q ss_pred             ecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          245 NVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       245 ~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      .   .|..+|.+++|+|++++|++| .||.+
T Consensus       241 ~---~~~~~v~~~~~~~~~~~l~~~-~d~~i  267 (372)
T 1k8k_C          241 A---SETLPLLAVTFITESSLVAAG-HDCFP  267 (372)
T ss_dssp             E---CSSCCEEEEEEEETTEEEEEE-TTSSC
T ss_pred             c---cCCCCeEEEEEecCCCEEEEE-eCCeE
Confidence            8   688899999999999999888 77654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-39  Score=259.48  Aligned_cols=241  Identities=14%  Similarity=0.184  Sum_probs=213.9

Q ss_pred             hccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCC
Q 023822           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE  101 (276)
Q Consensus        22 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~  101 (276)
                      ........+.+|.++|++++|+|++++|++++.||.|++||+.+++.+..+..|...|.+++|+|+++++++++.   |+
T Consensus        20 G~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---dg   96 (369)
T 3zwl_B           20 GSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSA---DY   96 (369)
T ss_dssp             CCSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET---TT
T ss_pred             ccccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeC---CC
Confidence            344555678999999999999999999999999999999999999999999999999999999999999999998   99


Q ss_pred             ceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCC-----CeEEEEeccCceeeeeE-------------eec-
Q 023822          102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLD-----RTVLLWDQRAEKCQGLL-------------RVQ-  162 (276)
Q Consensus       102 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~-------------~~~-  162 (276)
                      .|++||+.+++.+..+. +...+.+++|+|+++++++++.+     +.|++||++.......+             +.. 
T Consensus        97 ~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (369)
T 3zwl_B           97 SIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL  175 (369)
T ss_dssp             EEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTC
T ss_pred             eEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCc
Confidence            99999999999988887 88999999999999999999999     99999999876432222             111 


Q ss_pred             -CCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcE
Q 023822          163 -GRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL  240 (276)
Q Consensus       163 -~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  240 (276)
                       .+.+++|+|++.+++++. |+.|++||+++..   .....+..|...+.+++|+|++++|++++.|+.|++||+.+++.
T Consensus       176 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  252 (369)
T 3zwl_B          176 DAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY---EYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQV  252 (369)
T ss_dssp             CCEEEEEECGGGCEEEEEETTSEEEEEETTTTT---EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred             cceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc---EeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCce
Confidence             567899999998888877 8999999998732   22556667888999999999999999999999999999999999


Q ss_pred             EEEeecCCCCCCceEEEEECCCCcEEEEecCCC
Q 023822          241 LSTYNVKPVSRNSTLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       241 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  273 (276)
                      +..+.    +...+..++|+|+++++++++.++
T Consensus       253 ~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~  281 (369)
T 3zwl_B          253 LKKYE----TDCPLNTAVITPLKEFIILGGGQE  281 (369)
T ss_dssp             EEEEE----CSSCEEEEEECSSSSEEEEEECCC
T ss_pred             eeeec----CCCCceeEEecCCCceEEEeecCC
Confidence            99887    678899999999999999998876

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=7.4e-40  Score=264.85  Aligned_cols=238  Identities=15%  Similarity=0.182  Sum_probs=209.0

Q ss_pred             ccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCe------eeeeeeeeeeceEEEEEecc----C---CeE
Q 023822           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT------CLKTINSKKYGVDLVCFTSH----P---TTV   91 (276)
Q Consensus        25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~~~~v~~~~~~~~----~---~~l   91 (276)
                      .....+.+|.++|++++|+|  ++|++++.||.|++||+.+++      .+..+..|...|.+++|+|+    +   ++|
T Consensus         7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l   84 (397)
T 1sq9_A            7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV   84 (397)
T ss_dssp             EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred             hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence            44567889999999999998  799999999999999999887      78888899999999999999    9   999


Q ss_pred             EEeccCCCCCceEEEEccCCce-----eeeeccc-----CcceEEEEec----cCCCE-EEEeeCCCeEEEEeccC----
Q 023822           92 IYSSKNGWDESLRLLSLHDNKY-----LRYFKGH-----HDRVVSLSLC----SSKDC-FISGSLDRTVLLWDQRA----  152 (276)
Q Consensus        92 ~~~~~~~~d~~i~~~d~~~~~~-----~~~~~~~-----~~~i~~~~~~----~~~~~-l~~~~~d~~i~iwd~~~----  152 (276)
                      ++++.   |+.|++||+.+++.     ...+..|     ...|.+++|+    |++++ |++++.||.|++||++.    
T Consensus        85 ~s~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  161 (397)
T 1sq9_A           85 ATTSF---SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE  161 (397)
T ss_dssp             EEEET---TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred             EEEcC---CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccc
Confidence            99998   99999999999887     7888888     5899999999    99999 99999999999999998    


Q ss_pred             --ceeee-----eE---------eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecC---C---CCCc
Q 023822          153 --EKCQG-----LL---------RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGG---D---ISDA  209 (276)
Q Consensus       153 --~~~~~-----~~---------~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~---~---~~~i  209 (276)
                        .+.+.     .+         +...+.+++|+|++ +++++. |+.|++||+++.+.    ...+..   |   ...+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~h~~~~~~i  236 (397)
T 1sq9_A          162 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRP----LYNFESQHSMINNSNSI  236 (397)
T ss_dssp             HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEE----EEEEECCC---CCCCCE
T ss_pred             cccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCce----eEEEeccccccccCCcc
Confidence              65555     44         35568899999999 777777 89999999987543    455555   7   8899


Q ss_pred             eEEEECCCCcEEEEeecC---CcEEEEECCCCcEEEEeecCCC-------------CCCceEEEEECCCCcEEEEecCCC
Q 023822          210 NVVKFSNDGRLMLLTTME---GHIHVLDSFRGTLLSTYNVKPV-------------SRNSTLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       210 ~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~-------------~~~~v~~~~~s~~g~~l~~~~~dg  273 (276)
                      .+++|+|++++|++++.|   |.|++||+.+++.+..+.   .             |...|.+++|+|++++|++++.||
T Consensus       237 ~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  313 (397)
T 1sq9_A          237 RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLS---VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG  313 (397)
T ss_dssp             EEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEEC---BC--------CCBSBSSCEEEEEECSSSSEEEEEETTS
T ss_pred             ceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceec---cCcccccccccccccCCcEEEEEECCCCCEEEEEeCCC
Confidence            999999999999999999   999999999999999887   5             789999999999999999999998


Q ss_pred             CC
Q 023822          274 FS  275 (276)
Q Consensus       274 ~v  275 (276)
                      .+
T Consensus       314 ~i  315 (397)
T 1sq9_A          314 KL  315 (397)
T ss_dssp             EE
T ss_pred             eE
Confidence            65

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2.3e-39  Score=259.13  Aligned_cols=192  Identities=11%  Similarity=0.094  Sum_probs=160.3

Q ss_pred             eEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeee
Q 023822           79 VDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL  158 (276)
Q Consensus        79 v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  158 (276)
                      +.+++|+||++++++++. +.|+.|++||+++++.+..+. |...|.+++|+|+++++++++.+ .+++|+..+++....
T Consensus       136 ~~~v~fSpDg~~la~as~-~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~  212 (365)
T 4h5i_A          136 TKLVYISREGTVAAIASS-KVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIAR  212 (365)
T ss_dssp             EEEEEECTTSSCEEEEES-CSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEE
T ss_pred             EEEEEEcCCCCEEEEEEC-CCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceee
Confidence            678999999999887653 228999999999999888886 78889999999999999999855 566777666655443


Q ss_pred             E----eecCCCeeEecCCCcEEEEee-CC----eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCc
Q 023822          159 L----RVQGRPAAAYDDQGLVFAVAF-GG----YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGH  229 (276)
Q Consensus       159 ~----~~~~~~~~~~~~~~~~l~~~~-d~----~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  229 (276)
                      .    +...+..++|+|++.++++++ |+    .++.|++............+..|..+|++++|+|+|++||+|+.|+.
T Consensus       213 ~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~  292 (365)
T 4h5i_A          213 KTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNS  292 (365)
T ss_dssp             ECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSC
T ss_pred             eecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCE
Confidence            3    334467899999998888776 54    68889987755434445567788899999999999999999999999


Q ss_pred             EEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          230 IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       230 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      |+|||+.+++++..+..  +|..+|++++|+|||++||+||.|++|
T Consensus       293 V~iwd~~~~~~~~~~~~--gH~~~V~~v~fSpdg~~laS~S~D~tv  336 (365)
T 4h5i_A          293 IALVKLKDLSMSKIFKQ--AHSFAITEVTISPDSTYVASVSAANTI  336 (365)
T ss_dssp             EEEEETTTTEEEEEETT--SSSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred             EEEEECCCCcEEEEecC--cccCCEEEEEECCCCCEEEEEeCCCeE
Confidence            99999999999987632  799999999999999999999999986

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=9e-39  Score=270.42  Aligned_cols=236  Identities=20%  Similarity=0.317  Sum_probs=209.2

Q ss_pred             ccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceE
Q 023822           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (276)
Q Consensus        25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~  104 (276)
                      +....+.+|...|.+++|+|+++.|++++.|+.|++||.. ++.+..+..|...+.+++|+|+++.+++++.   |+.|+
T Consensus       294 ~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~---dg~v~  369 (577)
T 2ymu_A          294 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASD---DKTVK  369 (577)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEET---TSEEE
T ss_pred             cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeC---CCEEE
Confidence            4556788999999999999999999999999999999975 4556778889999999999999999999998   99999


Q ss_pred             EEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-C
Q 023822          105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-G  181 (276)
Q Consensus       105 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d  181 (276)
                      +||. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||.. ++....+  +...+.+++|+|++++++++. |
T Consensus       370 ~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d  447 (577)
T 2ymu_A          370 LWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDD  447 (577)
T ss_dssp             EEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-CCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEcCC
Confidence            9995 567788899999999999999999999999999999999964 4555555  555677899999999888887 8


Q ss_pred             CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECC
Q 023822          182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP  261 (276)
Q Consensus       182 ~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~  261 (276)
                      +.|++||... +    ....+..|...|.+++|+|++++|++++.|+.|++|| .+++++..+.   +|...|++++|+|
T Consensus       448 ~~v~~w~~~~-~----~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~-~~~~~~~~~~---~h~~~v~~l~~s~  518 (577)
T 2ymu_A          448 KTVKLWNRNG-Q----LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT---GHSSSVRGVAFSP  518 (577)
T ss_dssp             SEEEEEETTS-C----EEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEE-TTSCEEEEEE---CCSSCEEEEEECT
T ss_pred             CEEEEEECCC-C----EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEc-CCCCEEEEEe---CCCCCEEEEEEcC
Confidence            9999999643 2    2456678889999999999999999999999999999 5788888888   7999999999999


Q ss_pred             CCcEEEEecCCCCC
Q 023822          262 EGMFVISGRVSPFS  275 (276)
Q Consensus       262 ~g~~l~~~~~dg~v  275 (276)
                      +|++|++++.||.|
T Consensus       519 dg~~l~s~~~dg~v  532 (577)
T 2ymu_A          519 DGQTIASASDDKTV  532 (577)
T ss_dssp             TSSCEEEEETTSEE
T ss_pred             CCCEEEEEECcCEE
Confidence            99999999999975

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.1e-39  Score=260.74  Aligned_cols=237  Identities=17%  Similarity=0.222  Sum_probs=203.5

Q ss_pred             CCCcEEEEEEcCC----CCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEec-cCCeEEEeccCCCCCceEEEE
Q 023822           33 YNGRISSMDFHKS----SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTS-HPTTVIYSSKNGWDESLRLLS  107 (276)
Q Consensus        33 h~~~v~~~~~~~~----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~d~~i~~~d  107 (276)
                      |...|++++|+|+    +++|++++.||.|++||+.+++.+..+..|...|.+++|+| ++..+++++.   |+.|++||
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~---dg~i~iwd  144 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK---DHALRLWN  144 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEET---TSCEEEEE
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeC---CCeEEEEE
Confidence            6788999999998    67999999999999999999999999999999999999999 8999999998   99999999


Q ss_pred             ccCCceeeee---cccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE-------------------------
Q 023822          108 LHDNKYLRYF---KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-------------------------  159 (276)
Q Consensus       108 ~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-------------------------  159 (276)
                      +++++.+..+   ..|...|.+++|+|++++|++++.|+.|++||+++++....+                         
T Consensus       145 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (366)
T 3k26_A          145 IQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDF  224 (366)
T ss_dssp             TTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSE
T ss_pred             eecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcc
Confidence            9999988887   689999999999999999999999999999999977544322                         


Q ss_pred             -----eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCC----------CeeeeeecCCCCCceEEEECCC--CcEE
Q 023822          160 -----RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKG----------PFDIFSVGGDISDANVVKFSND--GRLM  221 (276)
Q Consensus       160 -----~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~----------~~~~~~~~~~~~~i~~~~~~~~--~~~l  221 (276)
                           +...+.+++|+  +.++++++ |+.|++||+++....          ......+..|...+.+++|+|+  +++|
T Consensus       225 ~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l  302 (366)
T 3k26_A          225 STRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKML  302 (366)
T ss_dssp             EECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEE
T ss_pred             ccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEE
Confidence                 44567788998  44555555 999999999875431          1224556678889999999999  9999


Q ss_pred             EEeecCCcEEEEECCCCcEE----EEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          222 LLTTMEGHIHVLDSFRGTLL----STYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       222 ~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      ++++.||.|++||+.+++..    ..+..+ .+...|++++|+|++++|++++.||.|
T Consensus       303 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~i  359 (366)
T 3k26_A          303 ALGNQVGKLYVWDLEVEDPHKAKCTTLTHH-KCGAAIRQTSFSRDSSILIAVCDDASI  359 (366)
T ss_dssp             EEECTTSCEEEEECCSSSGGGCEEEEECCT-TCCSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EEEecCCcEEEEECCCCCCccccceEEccc-ccCCceEEEEeCCCCCeEEEEeCCCEE
Confidence            99999999999999987643    355521 137999999999999999999999975

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2e-39  Score=262.27  Aligned_cols=244  Identities=13%  Similarity=0.139  Sum_probs=211.9

Q ss_pred             cccceeeccCCCcEEEEEEcCC----C---CEEEEeecCCeEEEEEccCCee-----eeeeeee-----eeceEEEEEe-
Q 023822           24 MEVGMSFRDYNGRISSMDFHKS----S---SYLVTASDDESIRLYDVTAATC-----LKTINSK-----KYGVDLVCFT-   85 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~----~---~~l~~~~~d~~i~iwd~~~~~~-----~~~~~~~-----~~~v~~~~~~-   85 (276)
                      .+....+.+|..+|.+++|+|+    +   ++|++++.||.|++||+.+++.     ...+..|     ...|.+++|+ 
T Consensus        52 ~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  131 (397)
T 1sq9_A           52 KDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA  131 (397)
T ss_dssp             GGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEEC
T ss_pred             CCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEee
Confidence            4567788899999999999999    9   9999999999999999998886     7888888     5899999999 


Q ss_pred             ---ccCCe-EEEeccCCCCCceEEEEccC------Cceee-----ee-------cccCcceEEEEeccCCCEEEEeeCCC
Q 023822           86 ---SHPTT-VIYSSKNGWDESLRLLSLHD------NKYLR-----YF-------KGHHDRVVSLSLCSSKDCFISGSLDR  143 (276)
Q Consensus        86 ---~~~~~-l~~~~~~~~d~~i~~~d~~~------~~~~~-----~~-------~~~~~~i~~~~~~~~~~~l~~~~~d~  143 (276)
                         |+++. +++++.   |+.|++||+.+      ++.+.     .+       ..|...|.+++|+|++ +|++++.|+
T Consensus       132 ~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg  207 (397)
T 1sq9_A          132 SNDRLLSHRLVATDV---KGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNG  207 (397)
T ss_dssp             CC----CEEEEEEET---TSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTS
T ss_pred             ccCCCCceEEEEEeC---CCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCC
Confidence               99999 999988   99999999998      66665     66       4488999999999999 999999999


Q ss_pred             eEEEEeccCceeeeeEe--------ecCCCeeEecCCCcEEEEee-C---CeEEEEecccCCCCCeeeeeecC-------
Q 023822          144 TVLLWDQRAEKCQGLLR--------VQGRPAAAYDDQGLVFAVAF-G---GYIRMFDARKYEKGPFDIFSVGG-------  204 (276)
Q Consensus       144 ~i~iwd~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~-d---~~i~~~d~~~~~~~~~~~~~~~~-------  204 (276)
                      .|++||+++.+.+..+.        ...+.+++|+|++.+|+++. |   +.|++||+++.+.    ...+..       
T Consensus       208 ~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~----~~~~~~~~~~~~~  283 (397)
T 1sq9_A          208 TVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER----IGSLSVPTHSSQA  283 (397)
T ss_dssp             EEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE----EEEECBC------
T ss_pred             cEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc----cceeccCcccccc
Confidence            99999999998888774        34577999999999888887 7   8999999987653    445555       


Q ss_pred             ------CCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEee------cC------------CCCCCceEEEEEC
Q 023822          205 ------DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN------VK------------PVSRNSTLEASFS  260 (276)
Q Consensus       205 ------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~------------~~~~~~v~~~~~s  260 (276)
                            |...|.+++|+|++++|++++.||.|++||+.+++.+..+.      .+            ..|...|.+++|+
T Consensus       284 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~  363 (397)
T 1sq9_A          284 SLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFL  363 (397)
T ss_dssp             --CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEE
T ss_pred             cccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEec
Confidence                  88899999999999999999999999999999999998887      31            0127899999999


Q ss_pred             CCC----------cEEEEecCCCCC
Q 023822          261 PEG----------MFVISGRVSPFS  275 (276)
Q Consensus       261 ~~g----------~~l~~~~~dg~v  275 (276)
                      |+|          ++|++++.||.|
T Consensus       364 ~~g~~~~~~~~~~~~l~s~~~dg~i  388 (397)
T 1sq9_A          364 KKGWRSGMGADLNESLCCVCLDRSI  388 (397)
T ss_dssp             CTTTSBSTTCTTSCEEEEEETTTEE
T ss_pred             cccccccccccccceEEEecCCCcE
Confidence            999          799999999975

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=9.8e-39  Score=275.68  Aligned_cols=241  Identities=18%  Similarity=0.238  Sum_probs=205.2

Q ss_pred             cceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEE
Q 023822           26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL  105 (276)
Q Consensus        26 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~  105 (276)
                      ....+.+|...|.+++|+|++++|++|+.|++|++||+.+++....+..|...|.+++|+|+++.+++++.   |+.|++
T Consensus       422 ~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~---D~~i~i  498 (694)
T 3dm0_A          422 AQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR---DRTIKL  498 (694)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET---TSCEEE
T ss_pred             ccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeC---CCEEEE
Confidence            34678899999999999999999999999999999999999999999999999999999999999999998   999999


Q ss_pred             EEccCCceeee---ecccCcceEEEEeccCC--CEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEE
Q 023822          106 LSLHDNKYLRY---FKGHHDRVVSLSLCSSK--DCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAV  178 (276)
Q Consensus       106 ~d~~~~~~~~~---~~~~~~~i~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~  178 (276)
                      ||+........   ..+|...|.+++|+|++  ..+++++.|++|++||+++.+....+  |...+.+++|+|++.++++
T Consensus       499 wd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s  578 (694)
T 3dm0_A          499 WNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCAS  578 (694)
T ss_dssp             ECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             EECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEE
Confidence            99865543322   24688999999999987  58999999999999999999888777  5566889999999999988


Q ss_pred             ee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCC---------
Q 023822          179 AF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP---------  248 (276)
Q Consensus       179 ~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------  248 (276)
                      ++ |+.|++||+++++.    +..+. +...+.+++|+|++.+|++++ ++.|++||+.+++.+..+..+.         
T Consensus       579 g~~Dg~i~iwd~~~~~~----~~~~~-~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  652 (694)
T 3dm0_A          579 GGKDGVVLLWDLAEGKK----LYSLE-ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADN  652 (694)
T ss_dssp             EETTSBCEEEETTTTEE----EECCB-CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC--------
T ss_pred             EeCCCeEEEEECCCCce----EEEec-CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccc
Confidence            87 99999999987653    33333 446799999999998877765 5669999999999888775211         


Q ss_pred             -------CCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          249 -------VSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       249 -------~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                             .+...+++++|+|+|++|++|+.||+|
T Consensus       653 ~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i  686 (694)
T 3dm0_A          653 SGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVI  686 (694)
T ss_dssp             --------CCCCEEEEEECTTSSEEEEEETTSEE
T ss_pred             cccccCCceeEEeeeEEEcCCCCEEEEEcCCCeE
Confidence                   011237899999999999999999976

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.4e-38  Score=251.67  Aligned_cols=233  Identities=10%  Similarity=0.173  Sum_probs=202.3

Q ss_pred             eccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeee---ee--eeeeceEEEEEeccCCeEEEeccCCCCCceE
Q 023822           30 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKT---IN--SKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (276)
Q Consensus        30 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~---~~--~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~  104 (276)
                      ..+|..+|++++|+|++++|++++ ||.|++||+.+++....   +.  .|...|.+++|+|+++.+++++.   |+.|+
T Consensus        47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~  122 (337)
T 1gxr_A           47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE---ASTLS  122 (337)
T ss_dssp             EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES---SSEEE
T ss_pred             eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcC---CCcEE
Confidence            347999999999999999999998 99999999987653332   32  67889999999999999999998   99999


Q ss_pred             EEEccCCc--eeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee
Q 023822          105 LLSLHDNK--YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF  180 (276)
Q Consensus       105 ~~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~  180 (276)
                      +||+.+++  ....+..|...|.+++|+|+++++++++.|+.|++||+++++....+  +...+.+++|+|++.+++++.
T Consensus       123 ~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  202 (337)
T 1gxr_A          123 IWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG  202 (337)
T ss_dssp             EEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEe
Confidence            99999887  56677889999999999999999999999999999999999888877  455678999999998888877


Q ss_pred             -CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEE
Q 023822          181 -GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF  259 (276)
Q Consensus       181 -d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~  259 (276)
                       |+.|++||+++.+.    ... ..+...+.+++|+|++++|++++.|+.|++||+.+++.. .+.   .|...|.+++|
T Consensus       203 ~dg~i~~~d~~~~~~----~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~---~~~~~v~~~~~  273 (337)
T 1gxr_A          203 LDNTVRSWDLREGRQ----LQQ-HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLH---LHESCVLSLKF  273 (337)
T ss_dssp             TTSEEEEEETTTTEE----EEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EEC---CCSSCEEEEEE
T ss_pred             cCCcEEEEECCCCce----Eee-ecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEc---CCccceeEEEE
Confidence             89999999987553    222 236678999999999999999999999999999988765 344   58899999999


Q ss_pred             CCCCcEEEEecCCCCC
Q 023822          260 SPEGMFVISGRVSPFS  275 (276)
Q Consensus       260 s~~g~~l~~~~~dg~v  275 (276)
                      +|++++|++++.||.+
T Consensus       274 ~~~~~~l~~~~~dg~i  289 (337)
T 1gxr_A          274 AYCGKWFVSTGKDNLL  289 (337)
T ss_dssp             CTTSSEEEEEETTSEE
T ss_pred             CCCCCEEEEecCCCcE
Confidence            9999999999999865

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-38  Score=247.87  Aligned_cols=241  Identities=15%  Similarity=0.222  Sum_probs=204.5

Q ss_pred             hccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCC
Q 023822           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE  101 (276)
Q Consensus        22 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~  101 (276)
                      ..++....+.+|.+.|++++| |++++|++++.||.|++||+.+++....+..|...|.+++|+|+++.+++++.   |+
T Consensus         6 ~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg   81 (313)
T 3odt_A            6 TGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGK---DT   81 (313)
T ss_dssp             CCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEET---TS
T ss_pred             ccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecC---CC
Confidence            356777889999999999999 99999999999999999999999999999999999999999999999999988   88


Q ss_pred             ceEEEEccCC-----------------------------------------ceeeeecccCcceEEEEecc-CCCEEEEe
Q 023822          102 SLRLLSLHDN-----------------------------------------KYLRYFKGHHDRVVSLSLCS-SKDCFISG  139 (276)
Q Consensus       102 ~i~~~d~~~~-----------------------------------------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~  139 (276)
                      .|++|++...                                         +....+..|...+.+++|.| ++++++++
T Consensus        82 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  161 (313)
T 3odt_A           82 MINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTA  161 (313)
T ss_dssp             CEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEE
T ss_pred             eEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEE
Confidence            8888886542                                         12223446778888999988 88999999


Q ss_pred             eCCCeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCC
Q 023822          140 SLDRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG  218 (276)
Q Consensus       140 ~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  218 (276)
                      +.|+.|++||.......... +...+.+++++|++.+++++.|+.|++||+++++.    ...+..|..++.+++|+|++
T Consensus       162 ~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~  237 (313)
T 3odt_A          162 SADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDV----LRTYEGHESFVYCIKLLPNG  237 (313)
T ss_dssp             ETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCE----EEEEECCSSCEEEEEECTTS
T ss_pred             ECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhh----hhhhhcCCceEEEEEEecCC
Confidence            99999999994433222222 55567899999999966666699999999987653    56667888999999999999


Q ss_pred             cEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          219 RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       219 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                       .|++++.||.|++||+.+++.+..+.   .|...|.+++|+|+++ +++++.||.+
T Consensus       238 -~l~~~~~dg~v~iwd~~~~~~~~~~~---~~~~~i~~~~~~~~~~-~~~~~~dg~i  289 (313)
T 3odt_A          238 -DIVSCGEDRTVRIWSKENGSLKQVIT---LPAISIWSVDCMSNGD-IIVGSSDNLV  289 (313)
T ss_dssp             -CEEEEETTSEEEEECTTTCCEEEEEE---CSSSCEEEEEECTTSC-EEEEETTSCE
T ss_pred             -CEEEEecCCEEEEEECCCCceeEEEe---ccCceEEEEEEccCCC-EEEEeCCCcE
Confidence             58899999999999999999999998   6888999999999998 5568888875

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5e-38  Score=251.32  Aligned_cols=241  Identities=15%  Similarity=0.151  Sum_probs=211.8

Q ss_pred             ccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCC--
Q 023822           23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD--  100 (276)
Q Consensus        23 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d--  100 (276)
                      ..+....+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+. +...+.+++|+|+++.+++++.   +  
T Consensus        63 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~---~~~  138 (369)
T 3zwl_B           63 NGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILD---NVM  138 (369)
T ss_dssp             TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEEC---CBT
T ss_pred             CchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecC---Ccc
Confidence            346677888999999999999999999999999999999999999888887 7789999999999999999987   7  


Q ss_pred             ---CceEEEEccCCc-----------eeeeecccCc--ceEEEEeccCCCEEEEeeCCCeEEEEeccC-ceeeeeE--ee
Q 023822          101 ---ESLRLLSLHDNK-----------YLRYFKGHHD--RVVSLSLCSSKDCFISGSLDRTVLLWDQRA-EKCQGLL--RV  161 (276)
Q Consensus       101 ---~~i~~~d~~~~~-----------~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~--~~  161 (276)
                         +.|.+||+....           ....+..|..  .+.+++|+|++++|++++.||.|++||+++ .+....+  +.
T Consensus       139 ~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  218 (369)
T 3zwl_B          139 KNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHE  218 (369)
T ss_dssp             TBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCS
T ss_pred             CCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCC
Confidence               999999998764           3344455665  899999999999999999999999999998 6766666  45


Q ss_pred             cCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCC------------
Q 023822          162 QGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG------------  228 (276)
Q Consensus       162 ~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------------  228 (276)
                      ..+.+++|+|++.+|++++ |+.|++||+++.+.    ...+. +...+..++|+|+++++++++.++            
T Consensus       219 ~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~----~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  293 (369)
T 3zwl_B          219 KSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQV----LKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEG  293 (369)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE----EEEEE-CSSCEEEEEECSSSSEEEEEECCC------------
T ss_pred             CceeEEEECCCCCEEEEecCCceEEEEECCCCce----eeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCC
Confidence            5678999999999888877 89999999987553    22332 667899999999999999999888            


Q ss_pred             --cEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          229 --HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       229 --~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                        .+++||..+++.+..+.   +|...|.+++|+|++++|++++.||.|
T Consensus       294 ~~~i~~~d~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~s~~~dg~v  339 (369)
T 3zwl_B          294 KFEARFYHKIFEEEIGRVQ---GHFGPLNTVAISPQGTSYASGGEDGFI  339 (369)
T ss_dssp             -CEEEEEETTTCCEEEEEE---CCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             cceeEEEecCCCcchhhee---cccCcEEEEEECCCCCEEEEEcCCCeE
Confidence              89999999999999998   789999999999999999999999975

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-39  Score=283.27  Aligned_cols=246  Identities=13%  Similarity=0.075  Sum_probs=206.1

Q ss_pred             ceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEcc--CCeeeeeeeeeeeceEEEEEecc--CCeEEEeccCCCCCc
Q 023822           27 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVT--AATCLKTINSKKYGVDLVCFTSH--PTTVIYSSKNGWDES  102 (276)
Q Consensus        27 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~~d~~  102 (276)
                      ...+.+|.++|++++|+|++++|++|+.||.|++||+.  +++....+..|..+|.+++|+|+  ++.+++++.   ||.
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~---Dg~   78 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY---DGK   78 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEET---TSC
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeC---CCe
Confidence            35678999999999999999999999999999999998  56778888999999999999988  899999998   999


Q ss_pred             eEEEEccCCc--eeeeecccCcceEEEEeccC--CCEEEEeeCCCeEEEEeccCceeeeeE----eecCCCeeEecC---
Q 023822          103 LRLLSLHDNK--YLRYFKGHHDRVVSLSLCSS--KDCFISGSLDRTVLLWDQRAEKCQGLL----RVQGRPAAAYDD---  171 (276)
Q Consensus       103 i~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~---  171 (276)
                      |++||+.+++  ....+..|...|.+++|+|+  ++++++++.||.|++||++........    +...+.++.|+|   
T Consensus        79 I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~  158 (753)
T 3jro_A           79 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI  158 (753)
T ss_dssp             EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-
T ss_pred             EEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccc
Confidence            9999999986  67778889999999999999  999999999999999999987433322    455678999999   


Q ss_pred             ----------CCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCC---CcEEEEeecCCcEEEEECCC
Q 023822          172 ----------QGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND---GRLMLLTTMEGHIHVLDSFR  237 (276)
Q Consensus       172 ----------~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~  237 (276)
                                ++.++++++ ||.|++||+++..........+..|..+|.+++|+|+   +++|++++.||.|++||+.+
T Consensus       159 ~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~  238 (753)
T 3jro_A          159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN  238 (753)
T ss_dssp             --------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred             ccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence                      466666666 9999999999865433445567789999999999999   99999999999999999988


Q ss_pred             CcEE--EEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          238 GTLL--STYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       238 ~~~~--~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      ++..  ........|...|++++|+|+|++|++|+.||.|
T Consensus       239 ~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I  278 (753)
T 3jro_A          239 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKV  278 (753)
T ss_dssp             SSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCE
T ss_pred             CCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEE
Confidence            6421  1111222588899999999999999999999975

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.3e-38  Score=254.55  Aligned_cols=232  Identities=16%  Similarity=0.224  Sum_probs=203.5

Q ss_pred             CCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEcc-CC
Q 023822           33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH-DN  111 (276)
Q Consensus        33 h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~-~~  111 (276)
                      |...|.+++|+|++++|++|+.||.|++||+.+++.+..+..|...|.+++|  ++..+++++.   |+.|++||++ ..
T Consensus       133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~---dg~i~i~d~~~~~  207 (401)
T 4aez_A          133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSR---SGAIHHHDVRIAN  207 (401)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEET---TSEEEEEETTSSS
T ss_pred             CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcC---CCCEEEEecccCc
Confidence            8899999999999999999999999999999999999999999999999999  5679999998   9999999998 56


Q ss_pred             ceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCC-cEEEEee---CCeEE
Q 023822          112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQG-LVFAVAF---GGYIR  185 (276)
Q Consensus       112 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~-~~l~~~~---d~~i~  185 (276)
                      .....+.+|...|.+++|+|++++|++++.|+.|++||+++++....+  +...+.+++|+|++ .+++++.   |+.|+
T Consensus       208 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~  287 (401)
T 4aez_A          208 HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIH  287 (401)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEE
T ss_pred             ceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEE
Confidence            677888899999999999999999999999999999999998888777  55678899999966 5666654   89999


Q ss_pred             EEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEE--eecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCC
Q 023822          186 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLL--TTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG  263 (276)
Q Consensus       186 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  263 (276)
                      +||+++++.    ...+ .+...+.+++|+|+++++++  |+.||.|++||+.+++........ +|...|.+++|+|+|
T Consensus       288 i~d~~~~~~----~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~-~h~~~v~~~~~s~dg  361 (401)
T 4aez_A          288 FWNAATGAR----VNTV-DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIP-AHDTRVLYSALSPDG  361 (401)
T ss_dssp             EEETTTCCE----EEEE-ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEE-CCSSCCCEEEECTTS
T ss_pred             EEECCCCCE----EEEE-eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEec-CCCCCEEEEEECCCC
Confidence            999987553    3333 35568999999999999999  458999999999987666553322 688999999999999


Q ss_pred             cEEEEecCCCCC
Q 023822          264 MFVISGRVSPFS  275 (276)
Q Consensus       264 ~~l~~~~~dg~v  275 (276)
                      ++|++++.||.+
T Consensus       362 ~~l~s~~~dg~i  373 (401)
T 4aez_A          362 RILSTAASDENL  373 (401)
T ss_dssp             SEEEEECTTSEE
T ss_pred             CEEEEEeCCCcE
Confidence            999999999975

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=8.9e-39  Score=260.43  Aligned_cols=237  Identities=14%  Similarity=0.165  Sum_probs=203.8

Q ss_pred             eeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEc
Q 023822           29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL  108 (276)
Q Consensus        29 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~  108 (276)
                      .+..| ..+....|+|++++|++++.||.|++||+.+++....+..|...|.+++|+|++++|++++.   |+.|++||+
T Consensus        93 ~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~---d~~i~iwd~  168 (420)
T 3vl1_A           93 MLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQ---DMQLKIWSV  168 (420)
T ss_dssp             TSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEET---TSEEEEEET
T ss_pred             EEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeC---CCeEEEEeC
Confidence            34444 44555678999999999999999999999999998888899999999999999999999998   999999999


Q ss_pred             cCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEee--------------------------c
Q 023822          109 HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV--------------------------Q  162 (276)
Q Consensus       109 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--------------------------~  162 (276)
                      .+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+++++....+..                          .
T Consensus       169 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  248 (420)
T 3vl1_A          169 KDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTS  248 (420)
T ss_dssp             TTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCC
T ss_pred             CCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccC
Confidence            99999999999999999999999999999999999999999999988877742                          4


Q ss_pred             CCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCc-EEEEeecCCcEEEEECCCCcE
Q 023822          163 GRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR-LMLLTTMEGHIHVLDSFRGTL  240 (276)
Q Consensus       163 ~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~  240 (276)
                      .+..++|+|++++++++. |+.|++||+++.+.   .......|...+.+++|+|+++ +|++++.||.|++||+++++.
T Consensus       249 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~  325 (420)
T 3vl1_A          249 KKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQ---TIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC  325 (420)
T ss_dssp             CCCTTCSSCTTEEEEEEETTSCEEEEETTTCCE---EEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS
T ss_pred             cccceEEcCCCCEEEEEcCCCeEEEEECCCCce---eEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC
Confidence            456778899998888887 89999999987553   1222345778999999999998 999999999999999998754


Q ss_pred             -EEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          241 -LSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       241 -~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                       +..+..  .+...+..+.| +++++|++++.||.+
T Consensus       326 ~~~~~~~--~~~~~v~~~~~-~~~~~l~s~~~d~~v  358 (420)
T 3vl1_A          326 PVGEFLI--NEGTPINNVYF-AAGALFVSSGFDTSI  358 (420)
T ss_dssp             CSEEEEE--STTSCEEEEEE-ETTEEEEEETTTEEE
T ss_pred             chhhhhc--cCCCCceEEEe-CCCCEEEEecCCccE
Confidence             666663  26677888855 578999999999875

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2.2e-38  Score=255.20  Aligned_cols=246  Identities=14%  Similarity=0.156  Sum_probs=200.1

Q ss_pred             hccccceeeccCCCcEEEEEEcCCC-CEEEEeecCCeEEEEEccCCeeeeeee--eeeeceEEEEEec-cCCeEEEeccC
Q 023822           22 QSMEVGMSFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTIN--SKKYGVDLVCFTS-HPTTVIYSSKN   97 (276)
Q Consensus        22 ~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~~   97 (276)
                      ..++....+.+|.+.|++++|+|++ ++|++|+.||.|++||+.+++....+.  .|...|.+++|+| +++.+++++. 
T Consensus        61 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-  139 (383)
T 3ei3_B           61 KSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSI-  139 (383)
T ss_dssp             TTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEET-
T ss_pred             cccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeC-
Confidence            4566778889999999999999998 999999999999999999887776665  5889999999999 7789999988 


Q ss_pred             CCCCceEEEEccCCceeeeecc---cCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCC
Q 023822           98 GWDESLRLLSLHDNKYLRYFKG---HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQ  172 (276)
Q Consensus        98 ~~d~~i~~~d~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~  172 (276)
                        |+.|++||+.+ +....+..   |...|.+++|+|++++|++++.|+.|++||++ ++....+  +...+.+++|+|+
T Consensus       140 --d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~  215 (383)
T 3ei3_B          140 --RGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPR  215 (383)
T ss_dssp             --TTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSS
T ss_pred             --CCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCC
Confidence              99999999986 44555543   34789999999999999999999999999995 5555555  5566889999999


Q ss_pred             Cc-EEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECC-CCcEEEEeecCCcEEEEECCCCcEEEEeecCC-
Q 023822          173 GL-VFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP-  248 (276)
Q Consensus       173 ~~-~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-  248 (276)
                      +. ++++++ |+.|++||+++.+......... .|...+.+++|+| ++++|++++.|+.|++||+.+++.+..+..+. 
T Consensus       216 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  294 (383)
T 3ei3_B          216 CDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPH  294 (383)
T ss_dssp             CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCB
T ss_pred             CCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccc
Confidence            97 777666 9999999999855332223333 5888999999999 99999999999999999999988777665321 


Q ss_pred             ---CCC----------CceEEEEECCCCcEEEEecCCCCC
Q 023822          249 ---VSR----------NSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       249 ---~~~----------~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                         .+.          ..+..++|+|+|++  +++.||.|
T Consensus       295 ~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i  332 (383)
T 3ei3_B          295 RQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTI  332 (383)
T ss_dssp             CCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCE
T ss_pred             cccccccceEEeccCCCCceEEEecCCccc--ccCCCCeE
Confidence               112          33445666777666  77788765

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-38  Score=258.86  Aligned_cols=242  Identities=15%  Similarity=0.217  Sum_probs=212.1

Q ss_pred             ccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeec---------------eEEEEEecc
Q 023822           23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYG---------------VDLVCFTSH   87 (276)
Q Consensus        23 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---------------v~~~~~~~~   87 (276)
                      ..+....+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+..+...               +.++.|+++
T Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (425)
T 1r5m_A          138 TGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD  217 (425)
T ss_dssp             TSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEET
T ss_pred             CCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCC
Confidence            34566778899999999999999999999999999999999999999888877766               999999987


Q ss_pred             CCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCC
Q 023822           88 PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRP  165 (276)
Q Consensus        88 ~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~  165 (276)
                      + .+++++.   ++.|++||+.+++.+..+..|...|.+++|+|++++|++++.|+.|++||+++++....+  +...+.
T Consensus       218 ~-~~~~~~~---~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~  293 (425)
T 1r5m_A          218 D-KFVIPGP---KGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIV  293 (425)
T ss_dssp             T-EEEEECG---GGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEE
T ss_pred             C-EEEEEcC---CCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEE
Confidence            5 4677776   999999999999999999999999999999999999999999999999999998877777  455678


Q ss_pred             eeEecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCc------
Q 023822          166 AAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT------  239 (276)
Q Consensus       166 ~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------  239 (276)
                      +++|+|++.+++++.|+.|++||+++.+.    ...+..|...+.+++|+|++++|++++.||.|++||+.+++      
T Consensus       294 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~  369 (425)
T 1r5m_A          294 SASWVGDDKVISCSMDGSVRLWSLKQNTL----LALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSL  369 (425)
T ss_dssp             EEEEETTTEEEEEETTSEEEEEETTTTEE----EEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC-----
T ss_pred             EEEECCCCEEEEEeCCCcEEEEECCCCcE----eEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeee
Confidence            99999999444444599999999987553    55566788899999999999999999999999999999888      


Q ss_pred             --------------EEEEeecCCCCCC--ceEEEEECCCCcEEEEecCCCCC
Q 023822          240 --------------LLSTYNVKPVSRN--STLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       240 --------------~~~~~~~~~~~~~--~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                                    .+..+.   .|..  .|.+++|+|++++|++++.||.|
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  418 (425)
T 1r5m_A          370 YGNRDGILNPLPIPLYASYQ---SSQDNDYIFDLSWNCAGNKISVAYSLQEG  418 (425)
T ss_dssp             ---------CEECCEEEEEC---CTTCCCCEEEEEECTTSSEEEEEESSSCC
T ss_pred             ecccccccCcccchhhhhhc---CcccCCceEEEEccCCCceEEEEecCceE
Confidence                          777777   5655  99999999999999999999976

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.9e-39  Score=261.52  Aligned_cols=235  Identities=16%  Similarity=0.242  Sum_probs=207.0

Q ss_pred             cCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccC----CeeeeeeeeeeeceEEEEEecc-CCeEEEeccCCCCCceEEE
Q 023822           32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA----ATCLKTINSKKYGVDLVCFTSH-PTTVIYSSKNGWDESLRLL  106 (276)
Q Consensus        32 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~d~~i~~~  106 (276)
                      .|...|++++|+|++++|++++.||.|++||+.+    .+.+..+..|...|.+++|+|+ +..+++++.   |+.|++|
T Consensus        65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---dg~v~iw  141 (416)
T 2pm9_A           65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGN---NGEIFIW  141 (416)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECS---SSCEEBC
T ss_pred             ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcC---CCeEEEE
Confidence            5889999999999999999999999999999987    4578888899999999999998 889999988   9999999


Q ss_pred             EccCCc------eee---eecccCcceEEEEeccC-CCEEEEeeCCCeEEEEeccCceeeeeEe--------ecCCCeeE
Q 023822          107 SLHDNK------YLR---YFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLR--------VQGRPAAA  168 (276)
Q Consensus       107 d~~~~~------~~~---~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~--------~~~~~~~~  168 (276)
                      |+.+++      ...   .+..|...|.+++|+|+ +.+|++++.|+.|++||+++++....+.        ...+.+++
T Consensus       142 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~  221 (416)
T 2pm9_A          142 DMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVE  221 (416)
T ss_dssp             BTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEE
T ss_pred             ECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEE
Confidence            999876      333   23678999999999999 7899999999999999999998888773        45577999


Q ss_pred             ecCCC-cEEEEee-CC---eEEEEecccCCCCCeeeeeec-CCCCCceEEEECC-CCcEEEEeecCCcEEEEECCCCcEE
Q 023822          169 YDDQG-LVFAVAF-GG---YIRMFDARKYEKGPFDIFSVG-GDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGTLL  241 (276)
Q Consensus       169 ~~~~~-~~l~~~~-d~---~i~~~d~~~~~~~~~~~~~~~-~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~  241 (276)
                      |+|++ .+++++. |+   .|++||+++....   ...+. .|...|.+++|+| ++++|++++.||.|++||+.+++.+
T Consensus       222 ~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~  298 (416)
T 2pm9_A          222 WHPKNSTRVATATGSDNDPSILIWDLRNANTP---LQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQL  298 (416)
T ss_dssp             ECSSCTTEEEEEECCSSSCCCCEEETTSTTSC---SBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEE
T ss_pred             ECCCCCCEEEEEECCCCCceEEEEeCCCCCCC---cEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccc
Confidence            99997 5666666 67   9999999985421   33445 6888999999999 8999999999999999999999999


Q ss_pred             EEeecCCCCCCceEEEEECCCC-cEEEEecCCCCC
Q 023822          242 STYNVKPVSRNSTLEASFSPEG-MFVISGRVSPFS  275 (276)
Q Consensus       242 ~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v  275 (276)
                      ..+.   .|...|.+++|+|++ .+|++++.||.|
T Consensus       299 ~~~~---~~~~~v~~~~~s~~~~~~l~s~~~d~~i  330 (416)
T 2pm9_A          299 SQFP---ARGNWCFKTKFAPEAPDLFACASFDNKI  330 (416)
T ss_dssp             EEEE---CSSSCCCCEEECTTCTTEEEECCSSSEE
T ss_pred             eeec---CCCCceEEEEECCCCCCEEEEEecCCcE
Confidence            9998   788999999999999 899999999875

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-39  Score=268.21  Aligned_cols=240  Identities=11%  Similarity=0.107  Sum_probs=194.0

Q ss_pred             eeeccCCCcEEEEEEcCC------CCEEEEeecCCeEEEEEccCCee-----------eeeeeeeeeceEEEEEeccCCe
Q 023822           28 MSFRDYNGRISSMDFHKS------SSYLVTASDDESIRLYDVTAATC-----------LKTINSKKYGVDLVCFTSHPTT   90 (276)
Q Consensus        28 ~~~~~h~~~v~~~~~~~~------~~~l~~~~~d~~i~iwd~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~   90 (276)
                      ..+.+|.+.|.+++|+|+      +.+||+++.||+|++||+.+++.           ...+..|...|.+++|+++ ..
T Consensus       201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~  279 (524)
T 2j04_B          201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TT  279 (524)
T ss_dssp             EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SE
T ss_pred             EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-Ce
Confidence            446778899999999996      57999999999999999986632           2356778889999999986 47


Q ss_pred             EEEeccCCCCCceEEEEccCCc-eeeeecccCcceEEE--EeccCC-CEEEEeeCCCeEEEEeccCceeeeeEee--c--
Q 023822           91 VIYSSKNGWDESLRLLSLHDNK-YLRYFKGHHDRVVSL--SLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRV--Q--  162 (276)
Q Consensus        91 l~~~~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~i~~~--~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~--  162 (276)
                      |++++.   ||+|++||+++++ +...+.+|...|.++  +|+|++ ++|++++.|++|++||++++++...+..  .  
T Consensus       280 lasgs~---DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~  356 (524)
T 2j04_B          280 VVCGFK---NGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGS  356 (524)
T ss_dssp             EEEEET---TSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCC
T ss_pred             EEEEeC---CCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccC
Confidence            899988   9999999998764 455688999999999  578887 8999999999999999999877666532  2  


Q ss_pred             CCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCC---
Q 023822          163 GRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG---  238 (276)
Q Consensus       163 ~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---  238 (276)
                      .+.+++|+|++..++++. |+.|++||++.+..    ...+.+|...|++++|+|+|++|++|+.||+|++||+..+   
T Consensus       357 ~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~----~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~  432 (524)
T 2j04_B          357 NLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFA----VHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLH  432 (524)
T ss_dssp             SCCCEEEETTTTEEEEECSSSEEEEEETTCTTC----CEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTT
T ss_pred             cccceEeCCCcCeEEEeCCCCcEEEEECccccc----ceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhcc
Confidence            367899999998777766 89999999998654    4455679999999999999999999999999999985321   


Q ss_pred             --c---------EEEEe---------------------------ecCCCCCCceEEEEECCCCc---EEEEecCCCCC
Q 023822          239 --T---------LLSTY---------------------------NVKPVSRNSTLEASFSPEGM---FVISGRVSPFS  275 (276)
Q Consensus       239 --~---------~~~~~---------------------------~~~~~~~~~v~~~~~s~~g~---~l~~~~~dg~v  275 (276)
                        +         .+..+                           ....+|...|.+++|+|++.   +||+|+.||+|
T Consensus       433 ~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~v  510 (524)
T 2j04_B          433 GIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLL  510 (524)
T ss_dssp             CC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEE
T ss_pred             ccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceE
Confidence              0         01001                           00114778899999999964   99999999986

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2e-38  Score=252.81  Aligned_cols=203  Identities=20%  Similarity=0.272  Sum_probs=184.6

Q ss_pred             ccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEec--cCCeEEEeccCCCCCc
Q 023822           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTS--HPTTVIYSSKNGWDES  102 (276)
Q Consensus        25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~~d~~  102 (276)
                      .....+.+|.+.|.+++|+|++..|++++.|++|++||+++++++..+.+|...|.++.|+|  +++.+++++.   |+.
T Consensus       145 ~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~---Dg~  221 (354)
T 2pbi_B          145 AKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGC---DKK  221 (354)
T ss_dssp             GGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEET---TSC
T ss_pred             ccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeC---CCe
Confidence            44566788999999999999999999999999999999999999999999999999999988  4679999998   999


Q ss_pred             eEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEee----cCCCeeEecCCCcEEEE
Q 023822          103 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV----QGRPAAAYDDQGLVFAV  178 (276)
Q Consensus       103 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~  178 (276)
                      |++||+++++++..+..|...|.+++|+|++++|++++.|++|++||++..+....+..    ..+.+++|+|++.++++
T Consensus       222 v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~  301 (354)
T 2pbi_B          222 AMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFA  301 (354)
T ss_dssp             EEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEE
T ss_pred             EEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEE
Confidence            99999999999999999999999999999999999999999999999999887766632    24568999999999988


Q ss_pred             ee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEE
Q 023822          179 AF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD  234 (276)
Q Consensus       179 ~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  234 (276)
                      +. |+.|++||+.+++.    ...+.+|...|.+++|+|+|++|++|+.||.|++|+
T Consensus       302 g~~d~~i~vwd~~~~~~----~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          302 GYNDYTINVWDVLKGSR----VSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EETTSCEEEEETTTCSE----EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EECCCcEEEEECCCCce----EEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            88 89999999987653    556778999999999999999999999999999996

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=2e-38  Score=251.48  Aligned_cols=241  Identities=12%  Similarity=0.063  Sum_probs=203.7

Q ss_pred             ceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCe---eeeeeeeeeeceEEEEEeccCC-eEEEeccCCCCCc
Q 023822           27 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT---CLKTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDES  102 (276)
Q Consensus        27 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~d~~  102 (276)
                      .....+|.+.|++++|+|++++|++++.|+.|++|++.+++   ....+..|...|.+++|+|+++ .+++++.   |+.
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~   80 (342)
T 1yfq_A            4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTV---QGE   80 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEET---TSC
T ss_pred             eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcC---CCe
Confidence            34456899999999999999999999999999999998776   3455668889999999999999 9999998   999


Q ss_pred             eEEEEc-cCCceeeeecc--cCcceEEEEeccCCCEEEEeeCCCeEEEEeccC---------ceeeeeE-eecCCCeeEe
Q 023822          103 LRLLSL-HDNKYLRYFKG--HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA---------EKCQGLL-RVQGRPAAAY  169 (276)
Q Consensus       103 i~~~d~-~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~---------~~~~~~~-~~~~~~~~~~  169 (276)
                      |++||+ .+++. ..+..  |...|.+++|+| +++|++++.|+.|++||+++         .+++..+ +...+.+++|
T Consensus        81 i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  158 (342)
T 1yfq_A           81 ILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT  158 (342)
T ss_dssp             EEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE
T ss_pred             EEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEe
Confidence            999999 77754 67788  999999999999 99999999999999999997         6655555 4556778999


Q ss_pred             cCCCcEEEEeeCCeEEEEeccc-CCCCCeeeeeecCCCCCceEEEECC-CCcEEEEeecCCcEEEEECCCC------cEE
Q 023822          170 DDQGLVFAVAFGGYIRMFDARK-YEKGPFDIFSVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRG------TLL  241 (276)
Q Consensus       170 ~~~~~~l~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~------~~~  241 (276)
                      +|++ +++++.|+.|++||++. .....  ......+...+.+++|+| +++++++++.||.|++|++...      +..
T Consensus       159 ~~~~-l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~  235 (342)
T 1yfq_A          159 NSSR-LIVGMNNSQVQWFRLPLCEDDNG--TIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR  235 (342)
T ss_dssp             CSSE-EEEEESTTEEEEEESSCCTTCCC--EEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTC
T ss_pred             cCCc-EEEEeCCCeEEEEECCccccccc--eeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccc
Confidence            9988 66666699999999987 54321  233446777899999999 9999999999999999999887      777


Q ss_pred             EEeecCCC------CCCceEEEEECCCCcEEEEecCCCCC
Q 023822          242 STYNVKPV------SRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       242 ~~~~~~~~------~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      ..+..+..      |...|.+++|+|++++|++++.||.|
T Consensus       236 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  275 (342)
T 1yfq_A          236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGII  275 (342)
T ss_dssp             EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCE
T ss_pred             eeeecccccccccccceeEEEEEEcCCCCEEEEecCCceE
Confidence            77773211      23499999999999999999999975

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.2e-38  Score=251.36  Aligned_cols=202  Identities=17%  Similarity=0.292  Sum_probs=184.5

Q ss_pred             ccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceE
Q 023822           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (276)
Q Consensus        25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~  104 (276)
                      +....+.+|.+.|.++.|++++. +++++.|++|++||+.+++.+..+..|...|.+++|+|+++.+++++.   |+.|+
T Consensus       134 ~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~---d~~v~  209 (340)
T 1got_B          134 RVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC---DASAK  209 (340)
T ss_dssp             EEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET---TSCEE
T ss_pred             eeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeC---CCcEE
Confidence            44567889999999999998764 889999999999999999999999999999999999999999999998   99999


Q ss_pred             EEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEee----cCCCeeEecCCCcEEEEee
Q 023822          105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV----QGRPAAAYDDQGLVFAVAF  180 (276)
Q Consensus       105 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~  180 (276)
                      +||+++++....+.+|...|.+++|+|++++|++++.|++|++||+++.+....+..    ..+.+++|+|++.++++++
T Consensus       210 ~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~  289 (340)
T 1got_B          210 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY  289 (340)
T ss_dssp             EEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred             EEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEEC
Confidence            999999999999999999999999999999999999999999999999887776632    2467899999999998888


Q ss_pred             -CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEE
Q 023822          181 -GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD  234 (276)
Q Consensus       181 -d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  234 (276)
                       |+.|++||+.+.+.    ...+.+|..+|.+++|+|+|++|++|+.|+.|++||
T Consensus       290 ~d~~i~vwd~~~~~~----~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          290 DDFNCNVWDALKADR----AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TTSEEEEEETTTCCE----EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCeEEEEEcccCcE----eeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence             89999999987553    556778999999999999999999999999999997

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=2.8e-38  Score=256.33  Aligned_cols=240  Identities=11%  Similarity=0.163  Sum_probs=205.3

Q ss_pred             ccceeeccCCCcEEEEEEcC-CCCEEEEeecCCeEEEEEccCC-------eeeeeeeeeeeceEEEEEeccC-CeEEEec
Q 023822           25 EVGMSFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAA-------TCLKTINSKKYGVDLVCFTSHP-TTVIYSS   95 (276)
Q Consensus        25 ~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~   95 (276)
                      +....+.+|.+.|++++|+| ++++|++|+.||.|++||+.++       +++..+..|...|.+++|+|++ ..+++++
T Consensus        72 ~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~  151 (402)
T 2aq5_A           72 KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAG  151 (402)
T ss_dssp             TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEE
T ss_pred             CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEc
Confidence            34556789999999999999 9999999999999999999987       5678888999999999999998 6888888


Q ss_pred             cCCCCCceEEEEccCCceeeee--cccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE-eec---CCCeeEe
Q 023822           96 KNGWDESLRLLSLHDNKYLRYF--KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-RVQ---GRPAAAY  169 (276)
Q Consensus        96 ~~~~d~~i~~~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~---~~~~~~~  169 (276)
                      .   |+.|++||+++++.+..+  ..|...|.+++|+|++++|++++.|+.|++||+++++.+..+ ..+   .+..+.|
T Consensus       152 ~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  228 (402)
T 2aq5_A          152 C---DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVF  228 (402)
T ss_dssp             T---TSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEE
T ss_pred             C---CCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEE
Confidence            8   999999999999999998  889999999999999999999999999999999999888776 222   2678999


Q ss_pred             cCCCcEEEEe----eCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEE-eecCCcEEEEECCCCcE-EEE
Q 023822          170 DDQGLVFAVA----FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLL-TTMEGHIHVLDSFRGTL-LST  243 (276)
Q Consensus       170 ~~~~~~l~~~----~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~-~~~  243 (276)
                      +|++.+++++    .|+.|++||+++.+.. .... ...+...+.+++|+|++++|++ ++.||.|++||+.+++. +..
T Consensus       229 ~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~-~~~~-~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~  306 (402)
T 2aq5_A          229 VSEGKILTTGFSRMSERQVALWDTKHLEEP-LSLQ-ELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHY  306 (402)
T ss_dssp             CSTTEEEEEEECTTCCEEEEEEETTBCSSC-SEEE-ECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEE
T ss_pred             cCCCcEEEEeccCCCCceEEEEcCccccCC-ceEE-eccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEe
Confidence            9999999998    4899999999986542 2222 2345678999999999999865 55799999999998884 555


Q ss_pred             eecCCCCCCceEEEEECCCCcEEEEec
Q 023822          244 YNVKPVSRNSTLEASFSPEGMFVISGR  270 (276)
Q Consensus       244 ~~~~~~~~~~v~~~~~s~~g~~l~~~~  270 (276)
                      +..+. +...|.+++|+|++.++++++
T Consensus       307 l~~~~-~~~~v~~~~~sp~~~~~~s~~  332 (402)
T 2aq5_A          307 LSMFS-SKESQRGMGYMPKRGLEVNKC  332 (402)
T ss_dssp             EEEEC-CSSCCSEEEECCGGGSCGGGT
T ss_pred             ecccc-cCCcccceEEecccccceecc
Confidence            54332 678999999999999887644

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=8e-38  Score=253.48  Aligned_cols=244  Identities=17%  Similarity=0.206  Sum_probs=205.1

Q ss_pred             ccceeeccCCCcEEEEEEcC-CCCEEEEeecCCeEEEEEccCCeeeeeee-------------eeeeceEEEEEec-cCC
Q 023822           25 EVGMSFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATCLKTIN-------------SKKYGVDLVCFTS-HPT   89 (276)
Q Consensus        25 ~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------------~~~~~v~~~~~~~-~~~   89 (276)
                      +....+.+|.++|++++|+| ++++|++++.||.|++||+.+++....+.             .|...|.+++|+| ++.
T Consensus        34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  113 (408)
T 4a11_B           34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG  113 (408)
T ss_dssp             TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred             cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc
Confidence            45566788999999999999 99999999999999999999876655543             4888999999999 777


Q ss_pred             eEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCC---CEEEEeeCCCeEEEEeccCceeeeeE--eecCC
Q 023822           90 TVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK---DCFISGSLDRTVLLWDQRAEKCQGLL--RVQGR  164 (276)
Q Consensus        90 ~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~  164 (276)
                      .+++++.   |+.|++||+.+++....+. +...+.++.|+|.+   .++++++.|+.|++||+++++....+  +...+
T Consensus       114 ~l~s~~~---d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v  189 (408)
T 4a11_B          114 MFTSSSF---DKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEI  189 (408)
T ss_dssp             CEEEEET---TSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCE
T ss_pred             EEEEEeC---CCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcE
Confidence            8999988   9999999999998887776 78889999999854   49999999999999999998887777  45567


Q ss_pred             CeeEecCCCc-EEEEee-CCeEEEEecccCCCCCee------------eeeecCCCCCceEEEECCCCcEEEEeecCCcE
Q 023822          165 PAAAYDDQGL-VFAVAF-GGYIRMFDARKYEKGPFD------------IFSVGGDISDANVVKFSNDGRLMLLTTMEGHI  230 (276)
Q Consensus       165 ~~~~~~~~~~-~l~~~~-d~~i~~~d~~~~~~~~~~------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  230 (276)
                      .+++|+|++. +++++. |+.|++||++........            ......|...|.+++|+|++++|++++.||.|
T Consensus       190 ~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  269 (408)
T 4a11_B          190 LAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRM  269 (408)
T ss_dssp             EEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             EEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeE
Confidence            8999999987 465555 999999999876522111            11124677899999999999999999999999


Q ss_pred             EEEECCCCcE-----------------------------------------------EEEeecCCCCCCceEEEEECCCC
Q 023822          231 HVLDSFRGTL-----------------------------------------------LSTYNVKPVSRNSTLEASFSPEG  263 (276)
Q Consensus       231 ~i~d~~~~~~-----------------------------------------------~~~~~~~~~~~~~v~~~~~s~~g  263 (276)
                      ++||+.+++.                                               +..+.   +|...|.+++|+|++
T Consensus       270 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~---~~~~~v~~~~~s~~~  346 (408)
T 4a11_B          270 RLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK---GHYKTVDCCVFQSNF  346 (408)
T ss_dssp             EEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEEC---CCSSCEEEEEEETTT
T ss_pred             EEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeec---cCCCeEEEEEEcCCC
Confidence            9999876543                                               33334   688999999999999


Q ss_pred             cEEEEecCCCCC
Q 023822          264 MFVISGRVSPFS  275 (276)
Q Consensus       264 ~~l~~~~~dg~v  275 (276)
                      ++|++++.||.+
T Consensus       347 ~~l~s~~~dg~i  358 (408)
T 4a11_B          347 QELYSGSRDCNI  358 (408)
T ss_dssp             TEEEEEETTSCE
T ss_pred             CEEEEECCCCeE
Confidence            999999999975

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=9.1e-38  Score=254.67  Aligned_cols=236  Identities=16%  Similarity=0.196  Sum_probs=201.6

Q ss_pred             ceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEE
Q 023822           27 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL  106 (276)
Q Consensus        27 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~  106 (276)
                      ...+.+|...|++++|+|+|++||+|+.||+|++||+++++++..+..|...+.++.+  ++..+++++.   |+.+++|
T Consensus       140 ~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~--~~~~l~sgs~---d~~i~~~  214 (420)
T 4gga_A          140 LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSR---SGHIHHH  214 (420)
T ss_dssp             EEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTEEEEEET---TSEEEEE
T ss_pred             EEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee--CCCEEEEEeC---CCceeEe
Confidence            3445678899999999999999999999999999999999999999999999988877  5778999988   9999999


Q ss_pred             EccCC-ceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceee----eeE--eecCCCeeEecCCC-cEEEE
Q 023822          107 SLHDN-KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ----GLL--RVQGRPAAAYDDQG-LVFAV  178 (276)
Q Consensus       107 d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~----~~~--~~~~~~~~~~~~~~-~~l~~  178 (276)
                      |.... ..+..+.+|...+..+.|+|+++++++++.|+.+++||...++..    ...  +...+..++|+|.+ .++++
T Consensus       215 d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~  294 (420)
T 4gga_A          215 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLAT  294 (420)
T ss_dssp             ETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEE
T ss_pred             eecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEE
Confidence            98765 456778899999999999999999999999999999999876532    222  44557789999865 45544


Q ss_pred             e--e-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEee--cCCcEEEEECCCCcEEEEeecCCCCCCc
Q 023822          179 A--F-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT--MEGHIHVLDSFRGTLLSTYNVKPVSRNS  253 (276)
Q Consensus       179 ~--~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~  253 (276)
                      +  + |+.|++||+++++.    ...+. +...+.++.|+|+++.+++++  .|+.|+|||+.+++++..+.   +|.+.
T Consensus       295 ~~gs~D~~I~iwd~~t~~~----~~~~~-~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~---gH~~~  366 (420)
T 4gga_A          295 GGGTSDRHIRIWNVCSGAC----LSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK---GHTSR  366 (420)
T ss_dssp             EECTTTCEEEEEETTTTEE----EEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC---CCSSC
T ss_pred             EeecCCCEEEEEeCCcccc----ceeec-cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEc---CCCCC
Confidence            3  2 89999999988653    33333 345789999999999888765  78999999999999999998   89999


Q ss_pred             eEEEEECCCCcEEEEecCCCCC
Q 023822          254 TLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       254 v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      |++++|+|||++|++|+.||+|
T Consensus       367 V~~l~~spdg~~l~S~s~D~tv  388 (420)
T 4gga_A          367 VLSLTMSPDGATVASAAADETL  388 (420)
T ss_dssp             EEEEEECTTSSCEEEEETTTEE
T ss_pred             EEEEEEcCCCCEEEEEecCCeE
Confidence            9999999999999999999976

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-38  Score=256.69  Aligned_cols=234  Identities=15%  Similarity=0.200  Sum_probs=203.6

Q ss_pred             eccCCCcEEEEEEcCCCC-EEEEeecCCeEEEEEc----cCCe------eeeeeee----------eeeceEEEEEeccC
Q 023822           30 FRDYNGRISSMDFHKSSS-YLVTASDDESIRLYDV----TAAT------CLKTINS----------KKYGVDLVCFTSHP   88 (276)
Q Consensus        30 ~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~----~~~~------~~~~~~~----------~~~~v~~~~~~~~~   88 (276)
                      ...|.++|++++|+|+++ +||+++.||.|++|++    .+++      ....+..          |...|.+++|+|++
T Consensus        41 ~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  120 (425)
T 1r5m_A           41 EIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG  120 (425)
T ss_dssp             EEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS
T ss_pred             eeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC
Confidence            345669999999999999 9999999999999999    8877      4555544          67799999999999


Q ss_pred             CeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe--ecC---
Q 023822           89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR--VQG---  163 (276)
Q Consensus        89 ~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~---  163 (276)
                      ++|++++.   |+.|++|| .+++.+..+..|...|.+++|+|++++|++++.|+.|++||+++++....+.  ...   
T Consensus       121 ~~l~~~~~---dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  196 (425)
T 1r5m_A          121 NSIVTGVE---NGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS  196 (425)
T ss_dssp             SEEEEEET---TSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC------
T ss_pred             CEEEEEeC---CCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccc
Confidence            99999998   99999999 6778888899999999999999999999999999999999999998887772  222   


Q ss_pred             ------------CCeeEecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEE
Q 023822          164 ------------RPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIH  231 (276)
Q Consensus       164 ------------~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  231 (276)
                                  +.++.|+|++.+++++.++.|++||++..+.    ...+..|...+.+++|+|++++|++++.|+.|+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~  272 (425)
T 1r5m_A          197 INAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTP----TGKLIGHHGPISVLEFNDTNKLLLSASDDGTLR  272 (425)
T ss_dssp             ---------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSC----SEEECCCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             eeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCce----eeeeccCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence                        7789999999888888899999999998654    455667888999999999999999999999999


Q ss_pred             EEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          232 VLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       232 i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      +||+.+++.+..+.   .|...|.+++|+|++ +|++++.||.+
T Consensus       273 i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~-~l~~~~~d~~i  312 (425)
T 1r5m_A          273 IWHGGNGNSQNCFY---GHSQSIVSASWVGDD-KVISCSMDGSV  312 (425)
T ss_dssp             EECSSSBSCSEEEC---CCSSCEEEEEEETTT-EEEEEETTSEE
T ss_pred             EEECCCCccceEec---CCCccEEEEEECCCC-EEEEEeCCCcE
Confidence            99999999988887   688999999999999 99999999865

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.1e-38  Score=254.13  Aligned_cols=238  Identities=13%  Similarity=0.143  Sum_probs=202.2

Q ss_pred             cCCCcEEEEEEcCC---CCEEEEeecCCeEEEEEccCCe-eeeeeeeeeeceEEEEE------eccCCeEEEeccCCCCC
Q 023822           32 DYNGRISSMDFHKS---SSYLVTASDDESIRLYDVTAAT-CLKTINSKKYGVDLVCF------TSHPTTVIYSSKNGWDE  101 (276)
Q Consensus        32 ~h~~~v~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~------~~~~~~l~~~~~~~~d~  101 (276)
                      +|..+|.+++|+|+   +++|++++.||.|++||+.+++ .+..+..|...|.++.|      +|+++.+++++.   |+
T Consensus        63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~---d~  139 (357)
T 3i2n_A           63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSR---DG  139 (357)
T ss_dssp             EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEET---TS
T ss_pred             cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeC---CC
Confidence            78999999999998   6999999999999999999888 88889999999999965      678999999998   99


Q ss_pred             ceEEEEccCCc-eeeeecccCc----ceEEEE----eccCCCEEEEeeCCCeEEEEeccCceeeeeE-eecCCCeeEecC
Q 023822          102 SLRLLSLHDNK-YLRYFKGHHD----RVVSLS----LCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-RVQGRPAAAYDD  171 (276)
Q Consensus       102 ~i~~~d~~~~~-~~~~~~~~~~----~i~~~~----~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~  171 (276)
                      .|++||+++++ ....+..|.+    .+.+++    |+|+++++++++.|+.|++||+++++..... +...+.+++|+|
T Consensus       140 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~  219 (357)
T 3i2n_A          140 TVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDR  219 (357)
T ss_dssp             CEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESC
T ss_pred             eEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCC
Confidence            99999999887 6777766554    788888    7889999999999999999999998876555 556788999999


Q ss_pred             ---CCcEEEEee-CCeEEEEecccCCCCCe-eeeeecCCCCCceEEEECCCCc-EEEEeecCCcEEEEECCCC-------
Q 023822          172 ---QGLVFAVAF-GGYIRMFDARKYEKGPF-DIFSVGGDISDANVVKFSNDGR-LMLLTTMEGHIHVLDSFRG-------  238 (276)
Q Consensus       172 ---~~~~l~~~~-d~~i~~~d~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-------  238 (276)
                         ++.+++++. |+.|++||+++.+.... .......|...|.+++|+|+++ +|++++.||.|++||+.++       
T Consensus       220 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  299 (357)
T 3i2n_A          220 KDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKD  299 (357)
T ss_dssp             SSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CC
T ss_pred             CCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccccccc
Confidence               787777777 89999999988654221 1223447889999999999998 8999999999999998754       


Q ss_pred             ------------cEEEEeecCCCCCCceEEEEECCCCcEEE-EecCCCCC
Q 023822          239 ------------TLLSTYNVKPVSRNSTLEASFSPEGMFVI-SGRVSPFS  275 (276)
Q Consensus       239 ------------~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~~~dg~v  275 (276)
                                  +.+..+.   +|...|.+++|+|++++|+ +++.||.+
T Consensus       300 ~~g~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~s~~~d~~i  346 (357)
T 3i2n_A          300 SEGIEMGVAGSVSLLQNVT---LSTQPISSLDWSPDKRGLCVCSSFDQTV  346 (357)
T ss_dssp             TTSCCCCCCCEEEEEEEEE---CCSSCEEEEEECSSSTTEEEEEETTSEE
T ss_pred             CCCCccccccccceeeccc---cCCCCeeEEEEcCCCCeEEEEecCCCcE
Confidence                        3455555   6899999999999999998 89999875

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.2e-37  Score=284.32  Aligned_cols=243  Identities=14%  Similarity=0.221  Sum_probs=218.1

Q ss_pred             ceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEE
Q 023822           27 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL  106 (276)
Q Consensus        27 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~  106 (276)
                      ...+.+|.+.|++++|+|++++|++|+.||+|++||+.+++.+..+..|...|.+++|+|+++++++++.   |+.|++|
T Consensus       608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~---d~~v~vw  684 (1249)
T 3sfz_A          608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSA---DKKVKIW  684 (1249)
T ss_dssp             SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET---TSEEEEE
T ss_pred             eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeC---CCeEEEE
Confidence            4467899999999999999999999999999999999999999999999999999999999999999998   9999999


Q ss_pred             EccCCceeeeecccCcceEEEEecc--CCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-C
Q 023822          107 SLHDNKYLRYFKGHHDRVVSLSLCS--SKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-G  181 (276)
Q Consensus       107 d~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d  181 (276)
                      |+.+++.+..+.+|...|.+++|+|  ++.++++++.|+.|++||++++++...+  +...+.+++|+|++.++++++ |
T Consensus       685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d  764 (1249)
T 3sfz_A          685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSAD  764 (1249)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESS
T ss_pred             ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECC
Confidence            9999999999999999999999999  4558999999999999999999988877  556688999999998888887 8


Q ss_pred             CeEEEEecccCCCCC---------------------------------------------------eeeeeecCCCCCce
Q 023822          182 GYIRMFDARKYEKGP---------------------------------------------------FDIFSVGGDISDAN  210 (276)
Q Consensus       182 ~~i~~~d~~~~~~~~---------------------------------------------------~~~~~~~~~~~~i~  210 (276)
                      +.|++||+++.+...                                                   ........|...+.
T Consensus       765 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~  844 (1249)
T 3sfz_A          765 GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQ  844 (1249)
T ss_dssp             SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCC
T ss_pred             CeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceE
Confidence            999999987653100                                                   00011125778899


Q ss_pred             EEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          211 VVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       211 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      +++|+|+++++++++.||.|++||+.++..+..+.   +|...|.+++|+|+|++|++++.||.+
T Consensus       845 ~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~---~h~~~v~~v~~spdg~~l~s~s~dg~v  906 (1249)
T 3sfz_A          845 YCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR---GHLSWVHGVMFSPDGSSFLTASDDQTI  906 (1249)
T ss_dssp             EEEECSSTTEEEEECSSSCEEEEETTTTEEEEEEC---CCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecC---CCccceEEEEECCCCCEEEEEeCCCeE
Confidence            99999999999999999999999999999999888   799999999999999999999999975

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.6e-38  Score=260.80  Aligned_cols=236  Identities=19%  Similarity=0.284  Sum_probs=192.5

Q ss_pred             cCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCe-----------eeeeeeeee------------eceEEEEEeccC
Q 023822           32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT-----------CLKTINSKK------------YGVDLVCFTSHP   88 (276)
Q Consensus        32 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~   88 (276)
                      .|.+.|++++|+|++++||+|+.||.|+|||+.+++           ....+.+|.            ..|.+++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            367899999999999999999999999999998776           577888887            889999999998


Q ss_pred             --CeEEEeccCCCCCceEEEEccCCcee---------------------------------------ee-ecccCcceEE
Q 023822           89 --TTVIYSSKNGWDESLRLLSLHDNKYL---------------------------------------RY-FKGHHDRVVS  126 (276)
Q Consensus        89 --~~l~~~~~~~~d~~i~~~d~~~~~~~---------------------------------------~~-~~~~~~~i~~  126 (276)
                        ..+++++.   |+.|++||+.+++..                                       .. ..+|...|.+
T Consensus       106 ~~~~l~s~s~---d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  182 (447)
T 3dw8_B          106 NAAQFLLSTN---DKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS  182 (447)
T ss_dssp             SSSEEEEEEC---SSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred             CcceEEEeCC---CCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence              78999988   999999999764432                                       12 3679999999


Q ss_pred             EEeccCCCEEEEeeCCCeEEEEeccC-ceeeee-------E--eecCCCeeEecCCC-cEEEEee-CCeEEEEecccCCC
Q 023822          127 LSLCSSKDCFISGSLDRTVLLWDQRA-EKCQGL-------L--RVQGRPAAAYDDQG-LVFAVAF-GGYIRMFDARKYEK  194 (276)
Q Consensus       127 ~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~-------~--~~~~~~~~~~~~~~-~~l~~~~-d~~i~~~d~~~~~~  194 (276)
                      ++|+|++++|+++ .|+.|++||++. .+....       +  +...+.+++|+|++ .++++++ |+.|++||+++.+.
T Consensus       183 ~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~  261 (447)
T 3dw8_B          183 ISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASAL  261 (447)
T ss_dssp             EEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSS
T ss_pred             EEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcc
Confidence            9999999999998 799999999994 444432       1  44557899999998 7777777 99999999998663


Q ss_pred             CCeeeeeecCCCC------------CceEEEECCCCcEEEEeecCCcEEEEECCC-CcEEEEeecCCCCCCc--------
Q 023822          195 GPFDIFSVGGDIS------------DANVVKFSNDGRLMLLTTMEGHIHVLDSFR-GTLLSTYNVKPVSRNS--------  253 (276)
Q Consensus       195 ~~~~~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~--------  253 (276)
                      .......+..|..            .|.+++|+|+|++|++++. +.|++||+.+ ++++..+.   +|...        
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~---~~~~~~~~l~~~~  337 (447)
T 3dw8_B          262 CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQ---VHEYLRSKLCSLY  337 (447)
T ss_dssp             SCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEE---SCGGGTTTHHHHH
T ss_pred             ccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceee---ccccccccccccc
Confidence            2222344455554            8999999999999999998 9999999997 88888887   45321        


Q ss_pred             -------eEEEEECCCCcEEEEecCCCCC
Q 023822          254 -------TLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       254 -------v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                             +..++|+|++++|++|+.||.|
T Consensus       338 ~~~~i~~~~~~~~s~~~~~l~s~s~dg~v  366 (447)
T 3dw8_B          338 ENDCIFDKFECCWNGSDSVVMTGSYNNFF  366 (447)
T ss_dssp             HTSGGGCCCCEEECTTSSEEEEECSTTEE
T ss_pred             cccccccceEEEECCCCCEEEEeccCCEE
Confidence                   3348999999999999999975

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=8.5e-38  Score=250.51  Aligned_cols=244  Identities=13%  Similarity=0.089  Sum_probs=203.8

Q ss_pred             cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeee--eeeeeceEEEEEeccCCeEEEeccCCCCC
Q 023822           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTI--NSKKYGVDLVCFTSHPTTVIYSSKNGWDE  101 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~~~~d~  101 (276)
                      ++....+.+|...|.+++|+|++++|++++.||.|++||+.+++....+  ..|...|.+++|+|+++++++++.   |+
T Consensus        42 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~  118 (372)
T 1k8k_C           42 WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSG---SR  118 (372)
T ss_dssp             EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEET---TS
T ss_pred             EEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeC---CC
Confidence            3467788899999999999999999999999999999999988755443  568889999999999999999998   99


Q ss_pred             ceEEEEccCCce----eeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEecc------------------CceeeeeE
Q 023822          102 SLRLLSLHDNKY----LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR------------------AEKCQGLL  159 (276)
Q Consensus       102 ~i~~~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~------------------~~~~~~~~  159 (276)
                      .|++||++.++.    ......|...|.+++|+|++++|++++.|+.|++||++                  .++....+
T Consensus       119 ~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (372)
T 1k8k_C          119 VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES  198 (372)
T ss_dssp             SEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC
T ss_pred             EEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEec
Confidence            999999998763    23336789999999999999999999999999999964                  45566555


Q ss_pred             --eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECC
Q 023822          160 --RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF  236 (276)
Q Consensus       160 --~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  236 (276)
                        +...+.+++|+|++.+++++. |+.|++||+++++.    ...+..|..++.+++|+|++++|+++ .|+.|++|++.
T Consensus       199 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~  273 (372)
T 1k8k_C          199 SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA----VATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYD  273 (372)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTE----EEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEE
T ss_pred             CCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCce----eEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEcc
Confidence              445678999999998888777 89999999998654    55666788899999999999988877 89999999998


Q ss_pred             C--CcEEE--E----------------------------------eecCCCCCCceEEEEEC-CCC---cEEEEecCCCC
Q 023822          237 R--GTLLS--T----------------------------------YNVKPVSRNSTLEASFS-PEG---MFVISGRVSPF  274 (276)
Q Consensus       237 ~--~~~~~--~----------------------------------~~~~~~~~~~v~~~~~s-~~g---~~l~~~~~dg~  274 (276)
                      +  ++...  .                                  .....+|...|++++|. ++|   ++|++|+.||.
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~  353 (372)
T 1k8k_C          274 SAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGG  353 (372)
T ss_dssp             TTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSE
T ss_pred             CcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCc
Confidence            7  43100  0                                  11112688999999966 677   99999999997


Q ss_pred             C
Q 023822          275 S  275 (276)
Q Consensus       275 v  275 (276)
                      |
T Consensus       354 i  354 (372)
T 1k8k_C          354 M  354 (372)
T ss_dssp             E
T ss_pred             e
Confidence            5

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=4.9e-38  Score=253.21  Aligned_cols=237  Identities=20%  Similarity=0.198  Sum_probs=193.0

Q ss_pred             eccCCCcEEEEEEcC-CCCEEEEeecCCeEEEEEccCCeeeeeeeee---eeceEEEEEeccCCeEEEeccCCCCCceEE
Q 023822           30 FRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSK---KYGVDLVCFTSHPTTVIYSSKNGWDESLRL  105 (276)
Q Consensus        30 ~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~  105 (276)
                      +.+|...|.+++|+| ++++|++++.|+.|++||+.+ +....+..+   ...|.+++|+|+++.+++++.   |+.|++
T Consensus       114 ~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~i  189 (383)
T 3ei3_B          114 GMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDS---TGRLLL  189 (383)
T ss_dssp             CCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEET---TSEEEE
T ss_pred             cCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECC---CCCEEE
Confidence            347999999999999 789999999999999999985 445555443   377999999999999999998   999999


Q ss_pred             EEccCCceeeeecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccC----ceeeeeE-eecCCCeeEecC-CCcEEEE
Q 023822          106 LSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRA----EKCQGLL-RVQGRPAAAYDD-QGLVFAV  178 (276)
Q Consensus       106 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~----~~~~~~~-~~~~~~~~~~~~-~~~~l~~  178 (276)
                      ||+ +++.+..+..|...|.+++|+|+++ +|++++.|+.|++||+++    ......+ +...+.+++|+| ++.++++
T Consensus       190 ~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~  268 (383)
T 3ei3_B          190 LGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLT  268 (383)
T ss_dssp             EET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEE
T ss_pred             EEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEE
Confidence            999 5778888999999999999999999 999999999999999998    5555555 556688999999 9988887


Q ss_pred             ee-CCeEEEEecccCCCCCeeeee---ecCCCC----------CceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEe
Q 023822          179 AF-GGYIRMFDARKYEKGPFDIFS---VGGDIS----------DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY  244 (276)
Q Consensus       179 ~~-d~~i~~~d~~~~~~~~~~~~~---~~~~~~----------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  244 (276)
                      ++ |+.|++||+++.+........   ...+..          .+..++|+|++++  +++.|+.|++||+.+++.+..+
T Consensus       269 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l  346 (383)
T 3ei3_B          269 TDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQL  346 (383)
T ss_dssp             EESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEE
T ss_pred             EcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeee
Confidence            77 899999999987653221110   111222          3334666666665  7778999999999999999998


Q ss_pred             ecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          245 NVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       245 ~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      ..+. +...+..++|+|++++|++|+ ||.|
T Consensus       347 ~~~~-~~~~~~~~~~s~~g~~l~s~s-d~~i  375 (383)
T 3ei3_B          347 RDPN-AAGIISLNKFSPTGDVLASGM-GFNI  375 (383)
T ss_dssp             CBTT-BCSCCCEEEECTTSSEEEEEE-TTEE
T ss_pred             cCCC-CCceEEEEEEecCccEEEEec-CCcE
Confidence            7432 567788889999999999997 7764

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=4.1e-38  Score=256.50  Aligned_cols=243  Identities=14%  Similarity=0.145  Sum_probs=199.8

Q ss_pred             ccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCc
Q 023822           23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES  102 (276)
Q Consensus        23 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~  102 (276)
                      ..+....+.+|.+.|++++|+|++++|++++.|+.|++||+.+++.+..+..|...|.+++|+|+++.+++++.   |+.
T Consensus       128 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---d~~  204 (420)
T 3vl1_A          128 FNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL---DGT  204 (420)
T ss_dssp             SCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEET---TSC
T ss_pred             CcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC---CCc
Confidence            34455667899999999999999999999999999999999999999999999999999999999999999998   999


Q ss_pred             eEEEEccCCceeeeecc---cC---------------------cceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeee
Q 023822          103 LRLLSLHDNKYLRYFKG---HH---------------------DRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL  158 (276)
Q Consensus       103 i~~~d~~~~~~~~~~~~---~~---------------------~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  158 (276)
                      |++||+++++.+..+..   |.                     ..+.+++|+|++++|++++.||.|++||+++++....
T Consensus       205 v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~  284 (420)
T 3vl1_A          205 IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQ  284 (420)
T ss_dssp             EEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             EEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEE
Confidence            99999999998888764   33                     3444555678999999999999999999999887777


Q ss_pred             E---eecCCCeeEecCCCc-EEEEee-CCeEEEEecccCCCCCeeeeeec-CCCCCceEEEECCCCcEEEEeecCCcEEE
Q 023822          159 L---RVQGRPAAAYDDQGL-VFAVAF-GGYIRMFDARKYEKGPFDIFSVG-GDISDANVVKFSNDGRLMLLTTMEGHIHV  232 (276)
Q Consensus       159 ~---~~~~~~~~~~~~~~~-~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  232 (276)
                      +   +...+.+++|+|++. ++++++ |+.|++||+++.+..   ...+. .+...+.++.+ |++++|++++.|+.|++
T Consensus       285 ~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~---~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~i  360 (420)
T 3vl1_A          285 LPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECP---VGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKL  360 (420)
T ss_dssp             ECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC---SEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEE
T ss_pred             cccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCc---hhhhhccCCCCceEEEe-CCCCEEEEecCCccEEE
Confidence            6   344577999999997 777776 899999999986532   22222 35667777755 57889999999999999


Q ss_pred             EECCCCcEE---------EEeecCCCCCCceEEEEECCCCc---EEEEecCCCCC
Q 023822          233 LDSFRGTLL---------STYNVKPVSRNSTLEASFSPEGM---FVISGRVSPFS  275 (276)
Q Consensus       233 ~d~~~~~~~---------~~~~~~~~~~~~v~~~~~s~~g~---~l~~~~~dg~v  275 (276)
                      |++.+....         ..+.   .+...|.+++|+|+++   .|++.+.+|++
T Consensus       361 w~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~  412 (420)
T 3vl1_A          361 DIISDPESERPAIEFETPTFLV---SNDDAVSQFCYVSDDESNGEVLEVGKNNFC  412 (420)
T ss_dssp             EEECCTTCCSCEECTTSCEEEC---CSSCCCCEEEEECCSSSSCEEEEEETTTEE
T ss_pred             EeccCCCCCccceeccCccEEc---cCCcceEEEEEccCCCCcceEEEEcCCceE
Confidence            998774221         2222   5788999999999999   66666666653

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=6.4e-38  Score=257.30  Aligned_cols=243  Identities=11%  Similarity=0.176  Sum_probs=195.9

Q ss_pred             cccceeeccCC------------CcEEEEEEcCCC--CEEEEeecCCeEEEEEccCCeee--------------------
Q 023822           24 MEVGMSFRDYN------------GRISSMDFHKSS--SYLVTASDDESIRLYDVTAATCL--------------------   69 (276)
Q Consensus        24 ~~~~~~~~~h~------------~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~--------------------   69 (276)
                      ++....+.+|.            ++|++++|+|++  ..|++++.|+.|++||+.+++..                    
T Consensus        71 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~  150 (447)
T 3dw8_B           71 YNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVT  150 (447)
T ss_dssp             EEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCC
T ss_pred             eeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCccccc
Confidence            34567888998            889999999998  79999999999999999765432                    


Q ss_pred             -------------------ee-eeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccC-Cceee-------eecccC
Q 023822           70 -------------------KT-INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD-NKYLR-------YFKGHH  121 (276)
Q Consensus        70 -------------------~~-~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~-~~~~~-------~~~~~~  121 (276)
                                         .. ...|...|.+++|+|+++.++++ .   |+.|++||+++ ++...       .+.+|.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  226 (447)
T 3dw8_B          151 TLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-D---DLRINLWHLEITDRSFNIVDIKPANMEELT  226 (447)
T ss_dssp             SCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-C---SSEEEEEETTEEEEEEEEEECCCSSGGGCC
T ss_pred             ceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-C---CCeEEEEECCCCCceeeeeecccccccccC
Confidence                               12 35688899999999999999998 6   99999999984 33433       356899


Q ss_pred             cceEEEEeccCC-CEEEEeeCCCeEEEEeccCcee----eeeEee--c------------CCCeeEecCCCcEEEEeeCC
Q 023822          122 DRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKC----QGLLRV--Q------------GRPAAAYDDQGLVFAVAFGG  182 (276)
Q Consensus       122 ~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~----~~~~~~--~------------~~~~~~~~~~~~~l~~~~d~  182 (276)
                      ..|.+++|+|++ ++|++++.||.|++||+++++.    ...+..  .            .+.+++|+|++++|++++++
T Consensus       227 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~  306 (447)
T 3dw8_B          227 EVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYL  306 (447)
T ss_dssp             CCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESS
T ss_pred             cceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCC
Confidence            999999999998 8999999999999999998876    455522  2            67899999999999988889


Q ss_pred             eEEEEeccc-CCCCCeeeeeecCCCCC---------------ceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeec
Q 023822          183 YIRMFDARK-YEKGPFDIFSVGGDISD---------------ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV  246 (276)
Q Consensus       183 ~i~~~d~~~-~~~~~~~~~~~~~~~~~---------------i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  246 (276)
                      .|++||++. .+.    ...+..|...               +..++|+|++++|++++.||.|++||+.+++.+.....
T Consensus       307 ~v~iwd~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~  382 (447)
T 3dw8_B          307 SVKVWDLNMENRP----VETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEAS  382 (447)
T ss_dssp             EEEEEETTCCSSC----SCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECC
T ss_pred             eEEEEeCCCCccc----cceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeec
Confidence            999999986 332    3333344321               33499999999999999999999999999887642210


Q ss_pred             -----------------------------CCCCCCceEEEEECCCCcEEEEecCCCC
Q 023822          247 -----------------------------KPVSRNSTLEASFSPEGMFVISGRVSPF  274 (276)
Q Consensus       247 -----------------------------~~~~~~~v~~~~~s~~g~~l~~~~~dg~  274 (276)
                                                   .......|..++|+|++++||+++.++.
T Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~~  439 (447)
T 3dw8_B          383 RENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNNL  439 (447)
T ss_dssp             STTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSCE
T ss_pred             ccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEeccee
Confidence                                         0023457889999999999999998874

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=4e-37  Score=253.89  Aligned_cols=235  Identities=17%  Similarity=0.305  Sum_probs=205.2

Q ss_pred             cceeeccCCCcE-EEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceE
Q 023822           26 VGMSFRDYNGRI-SSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (276)
Q Consensus        26 ~~~~~~~h~~~v-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~  104 (276)
                      ....+.+|...| .++.+  ++++|++|+.||+|++||+.+++.+..+.+|...|.+++|+|++ .+++++.   |+.|+
T Consensus       113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~---dg~i~  186 (464)
T 3v7d_B          113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGST---DRTVR  186 (464)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEET---TSCEE
T ss_pred             ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeC---CCCEE
Confidence            445788999885 66666  46799999999999999999999999999999999999999888 8888888   99999


Q ss_pred             EEEccCCceeeeecccCcceEEEEec--cCCCEEEEeeCCCeEEEEeccCceeee-----------------------eE
Q 023822          105 LLSLHDNKYLRYFKGHHDRVVSLSLC--SSKDCFISGSLDRTVLLWDQRAEKCQG-----------------------LL  159 (276)
Q Consensus       105 ~~d~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~~~-----------------------~~  159 (276)
                      +||+++++.+..+.+|...|.+++|+  ++++++++++.|+.|++||+++.....                       .+
T Consensus       187 vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (464)
T 3v7d_B          187 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL  266 (464)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE
T ss_pred             EEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc
Confidence            99999999999999999999999998  477899999999999999998765332                       22


Q ss_pred             eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCC
Q 023822          160 RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG  238 (276)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  238 (276)
                      ..+.....++++++.++++++ |+.|++||+++.+.    ...+..|...+.+++|+|+++++++|+.||.|++||+.++
T Consensus       267 ~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~  342 (464)
T 3v7d_B          267 RGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKC----LYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG  342 (464)
T ss_dssp             CCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEE----EEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT
T ss_pred             cCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcE----EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Confidence            334444556678888887777 99999999987554    6667789999999999999999999999999999999999


Q ss_pred             cEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          239 TLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       239 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      +.+..+.   +|...|.+++|+  +++|++++.||.|
T Consensus       343 ~~~~~~~---~h~~~v~~~~~~--~~~l~s~s~dg~v  374 (464)
T 3v7d_B          343 ELMYTLQ---GHTALVGLLRLS--DKFLVSAAADGSI  374 (464)
T ss_dssp             EEEEEEC---CCSSCEEEEEEC--SSEEEEEETTSEE
T ss_pred             cEEEEEe---CCCCcEEEEEEc--CCEEEEEeCCCcE
Confidence            9999998   789999999997  5799999999975

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-38  Score=258.71  Aligned_cols=244  Identities=11%  Similarity=0.102  Sum_probs=204.9

Q ss_pred             ccceeeccCCCcEEEEEEcCC-CCEEEEeecCCeEEEEEccCCe------eeee---eeeeeeceEEEEEecc-CCeEEE
Q 023822           25 EVGMSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTAAT------CLKT---INSKKYGVDLVCFTSH-PTTVIY   93 (276)
Q Consensus        25 ~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~------~~~~---~~~~~~~v~~~~~~~~-~~~l~~   93 (276)
                      +....+.+|...|.+++|+|+ +++|++++.|+.|++||+.+++      ....   +..|...|.+++|+|+ +..+++
T Consensus       104 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  183 (416)
T 2pm9_A          104 NSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFAS  183 (416)
T ss_dssp             CEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEE
T ss_pred             cchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEE
Confidence            466778899999999999998 8999999999999999999876      3333   3678889999999999 788888


Q ss_pred             eccCCCCCceEEEEccCCceeeeeccc------CcceEEEEeccCC-CEEEEeeCCC---eEEEEeccCc-eeeeeE---
Q 023822           94 SSKNGWDESLRLLSLHDNKYLRYFKGH------HDRVVSLSLCSSK-DCFISGSLDR---TVLLWDQRAE-KCQGLL---  159 (276)
Q Consensus        94 ~~~~~~d~~i~~~d~~~~~~~~~~~~~------~~~i~~~~~~~~~-~~l~~~~~d~---~i~iwd~~~~-~~~~~~---  159 (276)
                      ++.   |+.|++||+++++.+..+..+      ...|.+++|+|++ .++++++.|+   .|++||+++. .....+   
T Consensus       184 ~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~  260 (416)
T 2pm9_A          184 AGS---SNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQG  260 (416)
T ss_dssp             ESS---SSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSC
T ss_pred             EcC---CCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecC
Confidence            888   999999999999988888776      7899999999997 5899999998   9999999986 444444   


Q ss_pred             eecCCCeeEecC-CCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCC-cEEEEeecCCcEEEEECC
Q 023822          160 RVQGRPAAAYDD-QGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSF  236 (276)
Q Consensus       160 ~~~~~~~~~~~~-~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~  236 (276)
                      +...+.+++|+| ++.+++++. |+.|++||+++++.    ...+..|...+.+++|+|++ ++|++++.||.|++||+.
T Consensus       261 ~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~  336 (416)
T 2pm9_A          261 HQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ----LSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQ  336 (416)
T ss_dssp             CSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCE----EEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESC
T ss_pred             ccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcc----ceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEcc
Confidence            345577999999 888777777 89999999988654    56677888999999999999 899999999999999998


Q ss_pred             CCcEEEEeec--------------------------------CCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          237 RGTLLSTYNV--------------------------------KPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       237 ~~~~~~~~~~--------------------------------~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      +++.......                                ...+..++.+++|+|+|++|++++.||.|
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v  407 (416)
T 2pm9_A          337 NLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGV  407 (416)
T ss_dssp             CCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCB
T ss_pred             CCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeE
Confidence            7664332210                                00156778899999999999999999986

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.7e-37  Score=253.81  Aligned_cols=239  Identities=13%  Similarity=0.194  Sum_probs=202.1

Q ss_pred             eeeccCCCcEEEEEEcCC-CCEEEEeecCCeEEEEEccC----------CeeeeeeeeeeeceEEEEEeccCC-eEEEec
Q 023822           28 MSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTA----------ATCLKTINSKKYGVDLVCFTSHPT-TVIYSS   95 (276)
Q Consensus        28 ~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~   95 (276)
                      .....|.+.|++++|+|+ +.+|++++.||.|++|++.+          .+....+..|...+.+++|+|++. .|++++
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            345679999999999997 67999999999999999987          577888899999999999999988 888888


Q ss_pred             cCCCCCceEEEEccCCce-------eeeecccCcceEEEEecc-CCCEEEEeeCCCeEEEEeccCc---eeeeeE--eec
Q 023822           96 KNGWDESLRLLSLHDNKY-------LRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAE---KCQGLL--RVQ  162 (276)
Q Consensus        96 ~~~~d~~i~~~d~~~~~~-------~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~---~~~~~~--~~~  162 (276)
                      .   ||.|++||+..+..       ...+..|...|.+++|+| ++.+|++++.|+.|++||+++.   +....+  +..
T Consensus       202 ~---dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  278 (430)
T 2xyi_A          202 D---DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTA  278 (430)
T ss_dssp             T---TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSS
T ss_pred             C---CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCC
Confidence            8   99999999987422       456678999999999999 6779999999999999999977   344444  455


Q ss_pred             CCCeeEecCCCc-EEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCc-EEEEeecCCcEEEEECCC--
Q 023822          163 GRPAAAYDDQGL-VFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR-LMLLTTMEGHIHVLDSFR--  237 (276)
Q Consensus       163 ~~~~~~~~~~~~-~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~--  237 (276)
                      .+.+++|+|++. +++++. |+.|++||++....   ....+..|...|.+++|+|+++ +|++++.||.|++||+..  
T Consensus       279 ~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~---~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~  355 (430)
T 2xyi_A          279 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKL---KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG  355 (430)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS---CSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTT
T ss_pred             CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC---CeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCc
Confidence            678999999886 566665 89999999997443   2455567888999999999985 689999999999999986  


Q ss_pred             ------------CcEEEEeecCCCCCCceEEEEECCCCc-EEEEecCCCCC
Q 023822          238 ------------GTLLSTYNVKPVSRNSTLEASFSPEGM-FVISGRVSPFS  275 (276)
Q Consensus       238 ------------~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~v  275 (276)
                                  .+++..+.   +|...|.+++|+|+++ +|++++.||.+
T Consensus       356 ~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~p~~~~~l~s~s~dg~i  403 (430)
T 2xyi_A          356 EEQSTEDAEDGPPELLFIHG---GHTAKISDFSWNPNEPWIICSVSEDNIM  403 (430)
T ss_dssp             CCCCHHHHHHCCTTEEEECC---CCSSCEEEEEECSSSTTEEEEEETTSEE
T ss_pred             cccCccccccCCcceEEEcC---CCCCCceEEEECCCCCCEEEEEECCCCE
Confidence                        24555555   7889999999999999 89999999865

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=6.9e-38  Score=250.33  Aligned_cols=238  Identities=13%  Similarity=0.175  Sum_probs=202.1

Q ss_pred             eccCCCcEEEEEEcCC----CCEEEEeecCCeEEEEEccCCeeeeeeeeee-----eceEEEEEecc----CCeEEEecc
Q 023822           30 FRDYNGRISSMDFHKS----SSYLVTASDDESIRLYDVTAATCLKTINSKK-----YGVDLVCFTSH----PTTVIYSSK   96 (276)
Q Consensus        30 ~~~h~~~v~~~~~~~~----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~----~~~l~~~~~   96 (276)
                      ..+|.++|++++|+|+    ...+++++.++.|++||+.+++.+..+..+.     ..|.+++|+|+    +.++++++.
T Consensus        14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   93 (366)
T 3k26_A           14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS   93 (366)
T ss_dssp             ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred             ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence            4589999999999984    4566777777899999999888877776544     67999999999    568999988


Q ss_pred             CCCCCceEEEEccCCceeeeecccCcceEEEEecc-CCCEEEEeeCCCeEEEEeccCceeeeeE-----eecCCCeeEec
Q 023822           97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLL-----RVQGRPAAAYD  170 (276)
Q Consensus        97 ~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~~~~~~~~~  170 (276)
                         |+.|++||+.+++.+..+.+|...|.+++|+| ++++|++++.||.|++||+++++....+     +...+.+++|+
T Consensus        94 ---dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~  170 (366)
T 3k26_A           94 ---RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD  170 (366)
T ss_dssp             ---TCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEEC
T ss_pred             ---CCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEEC
Confidence               99999999999999999999999999999999 8999999999999999999999888776     45567899999


Q ss_pred             CCCcEEEEee-CCeEEEEecccCCCCC------------------------eeeeeecCCCCCceEEEECCCCcEEEEee
Q 023822          171 DQGLVFAVAF-GGYIRMFDARKYEKGP------------------------FDIFSVGGDISDANVVKFSNDGRLMLLTT  225 (276)
Q Consensus       171 ~~~~~l~~~~-d~~i~~~d~~~~~~~~------------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  225 (276)
                      |++.+++++. |+.|++||+++.+...                        ........|...|.+++|+  +++|++++
T Consensus       171 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~  248 (366)
T 3k26_A          171 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKS  248 (366)
T ss_dssp             TTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEEC
T ss_pred             CCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEe
Confidence            9998888877 8999999998643200                        0012233488899999998  67999999


Q ss_pred             cCCcEEEEECCCCcE--------------EEEeecCCCCCCceEEEEECCC--CcEEEEecCCCCC
Q 023822          226 MEGHIHVLDSFRGTL--------------LSTYNVKPVSRNSTLEASFSPE--GMFVISGRVSPFS  275 (276)
Q Consensus       226 ~dg~i~i~d~~~~~~--------------~~~~~~~~~~~~~v~~~~~s~~--g~~l~~~~~dg~v  275 (276)
                      .|+.|++||+.+++.              +..+.   .|...|.+++|+|+  +++|++|+.||.|
T Consensus       249 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~~~l~~~~~dg~i  311 (366)
T 3k26_A          249 CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFD---YSQCDIWYMRFSMDFWQKMLALGNQVGKL  311 (366)
T ss_dssp             SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEE---CSSCCSSCCCCEECTTSSEEEEECTTSCE
T ss_pred             cCCEEEEEeCCCccccccccccCCcchheecccc---ccCCcEEEEEEcCCCCCcEEEEEecCCcE
Confidence            999999999987754              66666   68889999999999  9999999999975

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.7e-38  Score=255.33  Aligned_cols=247  Identities=13%  Similarity=0.111  Sum_probs=191.0

Q ss_pred             ccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCe---eeeeeeeeeeceEEEEEeccCCeEEEeccCCCCC
Q 023822           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT---CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE  101 (276)
Q Consensus        25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~  101 (276)
                      +....+.+|...|.+++|+|++++|++++.|+.|++||+.+++   ....+..|...|.+++|+|+++.+++++.   |+
T Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~  122 (377)
T 3dwl_C           46 KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSG---AR  122 (377)
T ss_dssp             EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEES---SS
T ss_pred             EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEec---CC
Confidence            5667788999999999999999999999999999999999877   66777889999999999999999999998   99


Q ss_pred             ceEEEEccCCc---eeeeecc-cCcceEEEEeccCCCEEEEeeCCCeEEEEeccC------------------ceeeeeE
Q 023822          102 SLRLLSLHDNK---YLRYFKG-HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA------------------EKCQGLL  159 (276)
Q Consensus       102 ~i~~~d~~~~~---~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~------------------~~~~~~~  159 (276)
                      .|++||+++++   ....+.. |...|.+++|+|++++|++++.|+.|++||++.                  +++...+
T Consensus       123 ~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (377)
T 3dwl_C          123 VISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY  202 (377)
T ss_dssp             CEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC
T ss_pred             eEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc
Confidence            99999999887   3667777 999999999999999999999999999999852                  3333333


Q ss_pred             -eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCC
Q 023822          160 -RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR  237 (276)
Q Consensus       160 -~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  237 (276)
                       +...+.+++|+|++++|++++ |+.|++||+++.+..+.....+..|..++.+++|+|++++|++++.++.+ +|+...
T Consensus       203 ~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~  281 (377)
T 3dwl_C          203 PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNE  281 (377)
T ss_dssp             CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred             cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence             444577999999999888777 89999999998765433355667888899999999999999998876655 666542


Q ss_pred             CcE---------------------------E---------EEee-------------cCCCCCCceEEEEECCCC-c---
Q 023822          238 GTL---------------------------L---------STYN-------------VKPVSRNSTLEASFSPEG-M---  264 (276)
Q Consensus       238 ~~~---------------------------~---------~~~~-------------~~~~~~~~v~~~~~s~~g-~---  264 (276)
                      ...                           .         ..+.             ....|...|+++++.+.. .   
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~  361 (377)
T 3dwl_C          282 SGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNIT  361 (377)
T ss_dssp             ---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEE
T ss_pred             CceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceE
Confidence            110                           0         0010             011388999999976644 3   


Q ss_pred             EEEEecCCCCC
Q 023822          265 FVISGRVSPFS  275 (276)
Q Consensus       265 ~l~~~~~dg~v  275 (276)
                      .|++|+.||.|
T Consensus       362 ~~~s~g~Dg~i  372 (377)
T 3dwl_C          362 AFTSSGTDGRV  372 (377)
T ss_dssp             EEEEEETTSEE
T ss_pred             EEEeecCCCcE
Confidence            69999999976

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-38  Score=265.08  Aligned_cols=232  Identities=13%  Similarity=0.128  Sum_probs=185.7

Q ss_pred             CCCcEEEEEEcCCC---------CEEEE-------------------eecCCeEEEEEccCCeee----eeeeeeeeceE
Q 023822           33 YNGRISSMDFHKSS---------SYLVT-------------------ASDDESIRLYDVTAATCL----KTINSKKYGVD   80 (276)
Q Consensus        33 h~~~v~~~~~~~~~---------~~l~~-------------------~~~d~~i~iwd~~~~~~~----~~~~~~~~~v~   80 (276)
                      +.+.|.+|+|+|++         ++||+                   ++.|++|+|||+.+++..    ..+..|.+.|.
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~  211 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW  211 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence            57889999999976         66766                   447789999999877642    34556778899


Q ss_pred             EEEEecc------CCeEEEeccCCCCCceEEEEccCCce-----------eeeecccCcceEEEEeccCCCEEEEeeCCC
Q 023822           81 LVCFTSH------PTTVIYSSKNGWDESLRLLSLHDNKY-----------LRYFKGHHDRVVSLSLCSSKDCFISGSLDR  143 (276)
Q Consensus        81 ~~~~~~~------~~~l~~~~~~~~d~~i~~~d~~~~~~-----------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  143 (276)
                      .++|+|+      +..|++++.   |+.|++||+.+++.           ...+.+|...|.+++|++++ .|++|+.||
T Consensus       212 ~v~wsp~~~~~~~~~~LAs~s~---DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~Dg  287 (524)
T 2j04_B          212 DLKWHEGCHAPHLVGCLSFVSQ---EGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNG  287 (524)
T ss_dssp             EEEECSSCCCSSSSCEEEEEET---TSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTS
T ss_pred             EEEECCCCCCCCCCceEEEEec---CCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCC
Confidence            9999997      578999988   99999999976642           23677899999999999864 899999999


Q ss_pred             eEEEEeccCcee-eeeE--eecCCCee--EecCCC-cEEEEee-CCeEEEEecccCCCCCeeeeeecCCC--CCceEEEE
Q 023822          144 TVLLWDQRAEKC-QGLL--RVQGRPAA--AYDDQG-LVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDI--SDANVVKF  214 (276)
Q Consensus       144 ~i~iwd~~~~~~-~~~~--~~~~~~~~--~~~~~~-~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~--~~i~~~~~  214 (276)
                      +|++||++++.. ...+  |...+.++  +++|++ .+|++++ |++|++||+++.+.    ...+.+|.  ..+.+++|
T Consensus       288 tV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~----~~~~~~~~~~~~v~~v~f  363 (524)
T 2j04_B          288 FVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT----TKTTVSRFRGSNLVPVVY  363 (524)
T ss_dssp             EEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH----HCEEEEECSCCSCCCEEE
T ss_pred             EEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc----ccccccccccCcccceEe
Confidence            999999997643 3334  55667777  578887 7777776 99999999987553    11222232  35789999


Q ss_pred             CCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          215 SNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       215 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      +|+++.+++++.|+.|++||++++.++..+.   +|.+.|++++|+|+|++|++|+.||+|
T Consensus       364 sp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~---gH~~~V~sva~Sp~g~~l~Sgs~Dgtv  421 (524)
T 2j04_B          364 CPQIYSYIYSDGASSLRAVPSRAAFAVHPLV---SRETTITAIGVSRLHPMVLAGSADGSL  421 (524)
T ss_dssp             ETTTTEEEEECSSSEEEEEETTCTTCCEEEE---ECSSCEEEEECCSSCCBCEEEETTTEE
T ss_pred             CCCcCeEEEeCCCCcEEEEECcccccceeee---cCCCceEEEEeCCCCCeEEEEECCCEE
Confidence            9999999999999999999999999888887   699999999999999999999999976

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1e-37  Score=251.18  Aligned_cols=209  Identities=20%  Similarity=0.284  Sum_probs=182.6

Q ss_pred             cccceeeccCCCcEEEEEEcCC-CCEEEEeecCCeEEEEEccCCeeeeee-----eeeeeceEEEEEec-cCCeEEEecc
Q 023822           24 MEVGMSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTAATCLKTI-----NSKKYGVDLVCFTS-HPTTVIYSSK   96 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~   96 (276)
                      ......+.+|.+.|.++.|+|+ +..|++|+.|++|++||+.+++.+..+     .+|...|.++.|++ ++..+++++.
T Consensus       147 ~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~  226 (380)
T 3iz6_a          147 MPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSC  226 (380)
T ss_dssp             STTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEET
T ss_pred             ccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEEC
Confidence            4455678899999999999996 457999999999999999999988777     56888999999987 7889999998


Q ss_pred             CCCCCceEEEEcc-CCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeec---------CCCe
Q 023822           97 NGWDESLRLLSLH-DNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ---------GRPA  166 (276)
Q Consensus        97 ~~~d~~i~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---------~~~~  166 (276)
                         |+.|++||++ ..+.+..+.+|...|.+++|+|++++|++++.|++|++||+++++.+..+...         .+.+
T Consensus       227 ---D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~  303 (380)
T 3iz6_a          227 ---DTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTS  303 (380)
T ss_dssp             ---TSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSE
T ss_pred             ---CCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEE
Confidence               9999999998 45778889999999999999999999999999999999999999888776321         2678


Q ss_pred             eEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeee----cCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCc
Q 023822          167 AAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSV----GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT  239 (276)
Q Consensus       167 ~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  239 (276)
                      ++|+|++++++++. |+.|++||+...+.    ...+    .+|...|.+++|+|+|++|++|+.|+.|++|++...+
T Consensus       304 ~~~s~~g~~l~~g~~dg~i~vwd~~~~~~----~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          304 VAFSISGRLLFAGYSNGDCYVWDTLLAEM----VLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             EEECSSSSEEEEECTTSCEEEEETTTCCE----EEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             EEECCCCCEEEEEECCCCEEEEECCCCce----EEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence            99999999998888 89999999987553    2222    5788999999999999999999999999999987654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=6.3e-38  Score=249.84  Aligned_cols=240  Identities=15%  Similarity=0.209  Sum_probs=196.9

Q ss_pred             eeeccCCCcEEEEEEcCCCCEE-EEeec---CCeEEEEEccCCeeeeee-eeeeeceEEEEEecc---CCeEEEeccCCC
Q 023822           28 MSFRDYNGRISSMDFHKSSSYL-VTASD---DESIRLYDVTAATCLKTI-NSKKYGVDLVCFTSH---PTTVIYSSKNGW   99 (276)
Q Consensus        28 ~~~~~h~~~v~~~~~~~~~~~l-~~~~~---d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~---~~~l~~~~~~~~   99 (276)
                      ..+++|...|.+++|+|++..+ ++++.   |+.|++||+.+++..... ..|..+|.+++|+|+   ++.+++++.   
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~---   88 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDF---   88 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEET---
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecC---
Confidence            4457899999999999998655 56655   899999999988765443 368889999999998   699999998   


Q ss_pred             CCceEEEEccCCc-eeeeecccCcceEEEE------eccCCCEEEEeeCCCeEEEEeccCce-eeeeEee------cCCC
Q 023822          100 DESLRLLSLHDNK-YLRYFKGHHDRVVSLS------LCSSKDCFISGSLDRTVLLWDQRAEK-CQGLLRV------QGRP  165 (276)
Q Consensus       100 d~~i~~~d~~~~~-~~~~~~~~~~~i~~~~------~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~------~~~~  165 (276)
                      |+.|++||+.+++ .+..+.+|...|.+++      |+|++++|++++.|+.|++||+++++ ....+..      ..+.
T Consensus        89 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~  168 (357)
T 3i2n_A           89 GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCW  168 (357)
T ss_dssp             TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEE
T ss_pred             CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceE
Confidence            9999999999988 8888999999999995      46889999999999999999999876 5555522      1344


Q ss_pred             eeE----ecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECC---CCcEEEEeecCCcEEEEECCC
Q 023822          166 AAA----YDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN---DGRLMLLTTMEGHIHVLDSFR  237 (276)
Q Consensus       166 ~~~----~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~  237 (276)
                      ++.    |+|++.+++++. |+.|++||+++.+.     .....+...+.+++|+|   ++.+|++++.||.|++||+++
T Consensus       169 ~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  243 (357)
T 3i2n_A          169 TVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL-----RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT  243 (357)
T ss_dssp             EEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE-----EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE
T ss_pred             EEEEEeccCCCCCEEEEEccCCeEEEEECccCce-----eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC
Confidence            566    788999888888 79999999987552     23345778999999999   999999999999999999987


Q ss_pred             CcEEEEee--cCCCCCCceEEEEECCCCc-EEEEecCCCCC
Q 023822          238 GTLLSTYN--VKPVSRNSTLEASFSPEGM-FVISGRVSPFS  275 (276)
Q Consensus       238 ~~~~~~~~--~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~v  275 (276)
                      ++.+..+.  ...+|...|.+++|+|+++ +|++++.||.+
T Consensus       244 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  284 (357)
T 3i2n_A          244 QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGL  284 (357)
T ss_dssp             EETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred             CCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcE
Confidence            76544432  1115889999999999998 89999999875

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=5.3e-37  Score=269.22  Aligned_cols=241  Identities=18%  Similarity=0.265  Sum_probs=216.1

Q ss_pred             cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i  103 (276)
                      .+....+.+|.++|.+++|+|++++|++++.||.|++||+.+++.+..+..|...|.+++|+|+++.+++++.   |+.|
T Consensus        45 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i  121 (814)
T 3mkq_A           45 QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD---DLTV  121 (814)
T ss_dssp             TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEET---TSEE
T ss_pred             CceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcC---CCEE
Confidence            4566778899999999999999999999999999999999999999999999999999999999999999998   9999


Q ss_pred             EEEEccCC-ceeeeecccCcceEEEEecc-CCCEEEEeeCCCeEEEEeccCceeeeeEe---ecCCCeeEecC--CCcEE
Q 023822          104 RLLSLHDN-KYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLR---VQGRPAAAYDD--QGLVF  176 (276)
Q Consensus       104 ~~~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~--~~~~l  176 (276)
                      ++||+.++ .....+.+|...|.+++|+| +++.|++++.||.|++||+++++....+.   ...+..++|+|  ++.++
T Consensus       122 ~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  201 (814)
T 3mkq_A          122 KLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYM  201 (814)
T ss_dssp             EEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEE
T ss_pred             EEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEE
Confidence            99999987 66778889999999999999 88899999999999999998887766662   25688999999  88888


Q ss_pred             EEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceE
Q 023822          177 AVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTL  255 (276)
Q Consensus       177 ~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  255 (276)
                      +++. |+.|++||+++++.    ...+..|...+.+++|+|++++|++++.||.|++||+.+++.+..+.   .+...+.
T Consensus       202 ~~~~~dg~i~~~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~---~~~~~v~  274 (814)
T 3mkq_A          202 ITASDDLTIKIWDYQTKSC----VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN---VGLERSW  274 (814)
T ss_dssp             EEECTTSEEEEEETTTTEE----EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEEC---CSSSSEE
T ss_pred             EEEeCCCEEEEEECCCCcE----EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee---cCCCcEE
Confidence            8877 89999999987553    55667788899999999999999999999999999999999999888   6788999


Q ss_pred             EEEECCCCc--EEEEecCCCC
Q 023822          256 EASFSPEGM--FVISGRVSPF  274 (276)
Q Consensus       256 ~~~~s~~g~--~l~~~~~dg~  274 (276)
                      +++|+|+|+  ++++++.++.
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~  295 (814)
T 3mkq_A          275 CIATHPTGRKNYIASGFDNGF  295 (814)
T ss_dssp             EEEECTTCGGGEEEEEETTEE
T ss_pred             EEEEccCCCceEEEEEeCCCE
Confidence            999999997  5777776653

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.4e-38  Score=255.77  Aligned_cols=244  Identities=15%  Similarity=0.208  Sum_probs=198.8

Q ss_pred             ccccceee-ccCCCcEEEEEEcC-CCCEEEEeecCCeEEEEEccC---Ce---eeeeeeeeeeceEEEEEeccCCeEEEe
Q 023822           23 SMEVGMSF-RDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTA---AT---CLKTINSKKYGVDLVCFTSHPTTVIYS   94 (276)
Q Consensus        23 ~~~~~~~~-~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~---~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~   94 (276)
                      ..+.+..+ .+|.++|++++|+| ++++|++|+.||+|++||+.+   +.   ....+ .|...|.+++|+|+++.++++
T Consensus        51 ~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~  129 (437)
T 3gre_A           51 RGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVS  129 (437)
T ss_dssp             CCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEE
T ss_pred             cceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEE
Confidence            34556677 88999999999999 999999999999999999976   43   22222 588899999999999999999


Q ss_pred             ccCCCCCceEEEEcc---CCceeeeecc------------cCcceEEEE--eccCCCEEEEeeCCCeEEEEeccCceeee
Q 023822           95 SKNGWDESLRLLSLH---DNKYLRYFKG------------HHDRVVSLS--LCSSKDCFISGSLDRTVLLWDQRAEKCQG  157 (276)
Q Consensus        95 ~~~~~d~~i~~~d~~---~~~~~~~~~~------------~~~~i~~~~--~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  157 (276)
                      +.   |+.|++||+.   +++....+..            +...+.++.  +++++++|++++.|+.|++||+++++.+.
T Consensus       130 s~---dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  206 (437)
T 3gre_A          130 SK---DGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQ  206 (437)
T ss_dssp             ET---TSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEE
T ss_pred             eC---CCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeE
Confidence            98   9999999995   5554443332            344566666  45788999999999999999999999888


Q ss_pred             eEe----ecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeec-CCCCCceEEEEC----CCCcEEEEeecC
Q 023822          158 LLR----VQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVG-GDISDANVVKFS----NDGRLMLLTTME  227 (276)
Q Consensus       158 ~~~----~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~-~~~~~i~~~~~~----~~~~~l~~~~~d  227 (276)
                      .+.    ...+.+++|+|++.++++++ |+.|++||++..+.    ...+. .|..+|.+++|+    |++++|++++.|
T Consensus       207 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~d  282 (437)
T 3gre_A          207 IIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVL----IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSK  282 (437)
T ss_dssp             EEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEE----EEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTT
T ss_pred             EEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccE----EEEEecCCCCceEEEEeccccCCCccEEEEEcCC
Confidence            874    35688999999999888887 89999999987443    33332 566789999665    468899999999


Q ss_pred             CcEEEEECCCCcEEEEeecCC-----------------------CCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          228 GHIHVLDSFRGTLLSTYNVKP-----------------------VSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       228 g~i~i~d~~~~~~~~~~~~~~-----------------------~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      |.|++||+.+++.+..+..+.                       .|...|++++|+ ++++|++|+.||.|
T Consensus       283 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i  352 (437)
T 3gre_A          283 TFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSI  352 (437)
T ss_dssp             EEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEE
T ss_pred             CcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeE
Confidence            999999999999888876321                       156678999999 78999999999875

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.3e-37  Score=254.92  Aligned_cols=242  Identities=16%  Similarity=0.167  Sum_probs=190.5

Q ss_pred             cccceeeccCCCcEEEEEEcC-CCCEEEEeecCCeEEEEEccCCee--eeeeeeeeeceEEEEEec-cCCeEEEeccCCC
Q 023822           24 MEVGMSFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATC--LKTINSKKYGVDLVCFTS-HPTTVIYSSKNGW   99 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~   99 (276)
                      ++......+|...|+||+|+| ++++||+|+.||.|+|||+.+++.  ...+.+|...|.+++|+| ++.+|++++.   
T Consensus       109 ~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~---  185 (435)
T 4e54_B          109 YRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSM---  185 (435)
T ss_dssp             TTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECS---
T ss_pred             eeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeC---
Confidence            344556678999999999999 567999999999999999987654  344568999999999998 6789999988   


Q ss_pred             CCceEEEEccCCceeeeec--ccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCc-
Q 023822          100 DESLRLLSLHDNKYLRYFK--GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGL-  174 (276)
Q Consensus       100 d~~i~~~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~-  174 (276)
                      |+.|++||++++.......  .+...+.+++|+|++++|++|+.||.|++||++... +..+  +...+.+++|+|++. 
T Consensus       186 D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~-~~~~~~h~~~v~~v~~~p~~~~  264 (435)
T 4e54_B          186 EGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-LWNLRMHKKKVTHVALNPCCDW  264 (435)
T ss_dssp             SSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB-CCCSBCCSSCEEEEEECTTCSS
T ss_pred             CCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce-eEEEecccceEEeeeecCCCce
Confidence            9999999998765433333  234467899999999999999999999999997643 3334  566788999999875 


Q ss_pred             EEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCC---C
Q 023822          175 VFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV---S  250 (276)
Q Consensus       175 ~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~  250 (276)
                      ++++++ |+.|++||+++.+... .......|..+|++++|+|+|++|++++.||.|++||+.+++....+..+..   .
T Consensus       265 ~~~s~s~d~~v~iwd~~~~~~~~-~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~  343 (435)
T 4e54_B          265 FLATASVDQTVKIWDLRQVRGKA-SFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQ  343 (435)
T ss_dssp             EEEEEETTSBCCEEETTTCCSSS-CCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCS
T ss_pred             EEEEecCcceeeEEecccccccc-eEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccc
Confidence            666665 9999999998765422 2334456888999999999999999999999999999999988777653211   1


Q ss_pred             CCceEEEEECCCCcEEEEec
Q 023822          251 RNSTLEASFSPEGMFVISGR  270 (276)
Q Consensus       251 ~~~v~~~~~s~~g~~l~~~~  270 (276)
                      ...+....|+|++.++++++
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~  363 (435)
T 4e54_B          344 HLTPIKAAWHPRYNLIVVGR  363 (435)
T ss_dssp             SSCCCBCEECSSSSCEEEEC
T ss_pred             cceeEEEEEcCCCCEEEEEE
Confidence            12344567888887777664

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=4.6e-36  Score=235.46  Aligned_cols=234  Identities=16%  Similarity=0.177  Sum_probs=196.8

Q ss_pred             eeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEc
Q 023822           29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL  108 (276)
Q Consensus        29 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~  108 (276)
                      .+.+|...|++++|+|++++|++|+.||+|++||+++++++..+..|...+.++.  +++..+++++.   ++.+++|+.
T Consensus        62 ~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~--~~~~~l~s~~~---~~~~~~~~~  136 (318)
T 4ggc_A           62 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLS--WNSYILSSGSR---SGHIHHHDV  136 (318)
T ss_dssp             ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE--EETTEEEEEET---TSEEEEEET
T ss_pred             EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEee--cCCCEEEEEec---CCceEeeec
Confidence            4567889999999999999999999999999999999999999999987776654  56788999988   999999998


Q ss_pred             cCC-ceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE------eecCCCeeEecCCC-cEEE--E
Q 023822          109 HDN-KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL------RVQGRPAAAYDDQG-LVFA--V  178 (276)
Q Consensus       109 ~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------~~~~~~~~~~~~~~-~~l~--~  178 (276)
                      ... ..+..+.+|...+..+.+.+++++|++++.|+.|++||+++++.....      +...+..+.++|.+ .++.  .
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  216 (318)
T 4ggc_A          137 RVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG  216 (318)
T ss_dssp             TSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE
T ss_pred             CCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe
Confidence            776 456678899999999999999999999999999999999876543222      33446678888865 3333  2


Q ss_pred             ee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEee--cCCcEEEEECCCCcEEEEeecCCCCCCceE
Q 023822          179 AF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT--MEGHIHVLDSFRGTLLSTYNVKPVSRNSTL  255 (276)
Q Consensus       179 ~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  255 (276)
                      +. ++.|++||.+...     ......+...+..+.|+|+++.+++++  .|+.|++||+.+++++..+.   +|.+.|+
T Consensus       217 ~~~~~~i~lwd~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~---gH~~~V~  288 (318)
T 4ggc_A          217 GTSDRHIRIWNVCSGA-----CLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK---GHTSRVL  288 (318)
T ss_dssp             CTTTCEEEEEETTTCC-----EEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC---CCSSCEE
T ss_pred             cCCCCEEEEEeccccc-----ccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc---CCCCCEE
Confidence            33 7999999998754     223334667899999999998887654  79999999999999999998   7999999


Q ss_pred             EEEECCCCcEEEEecCCCCC
Q 023822          256 EASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       256 ~~~~s~~g~~l~~~~~dg~v  275 (276)
                      +++|+|+|++|++|+.||+|
T Consensus       289 ~l~~spdg~~l~S~s~D~~v  308 (318)
T 4ggc_A          289 SLTMSPDGATVASAAADETL  308 (318)
T ss_dssp             EEEECTTSSCEEEEETTTEE
T ss_pred             EEEEcCCCCEEEEEecCCeE
Confidence            99999999999999999976

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=3.5e-37  Score=244.33  Aligned_cols=235  Identities=12%  Similarity=0.131  Sum_probs=199.9

Q ss_pred             ceeeccCCCcEEEEEEcCCCC-EEEEeecCCeEEEEEc-cCCeeeeeeee--eeeceEEEEEeccCCeEEEeccCCCCCc
Q 023822           27 GMSFRDYNGRISSMDFHKSSS-YLVTASDDESIRLYDV-TAATCLKTINS--KKYGVDLVCFTSHPTTVIYSSKNGWDES  102 (276)
Q Consensus        27 ~~~~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~d~~  102 (276)
                      ...+.+|...|.+++|+|+++ +|++++.||.|++||+ .+++. ..+..  |...|.+++|+| +..+++++.   |+.
T Consensus        49 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~---d~~  123 (342)
T 1yfq_A           49 LLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASW---DGL  123 (342)
T ss_dssp             EEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEET---TSE
T ss_pred             ceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcC---CCe
Confidence            345568999999999999999 9999999999999999 77754 66777  999999999999 999999998   999


Q ss_pred             eEEEEccC---------CceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccC-ceeeeeE----eecCCCeeE
Q 023822          103 LRLLSLHD---------NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA-EKCQGLL----RVQGRPAAA  168 (276)
Q Consensus       103 i~~~d~~~---------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~----~~~~~~~~~  168 (276)
                      |++||+++         ++++..+. |...|.+++|+|++  +++++.|+.|++||+++ .......    +...+.+++
T Consensus       124 i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~  200 (342)
T 1yfq_A          124 IEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVA  200 (342)
T ss_dssp             EEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEE
T ss_pred             EEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEE
Confidence            99999988         77777776 88999999999887  99999999999999998 5432211    445677999


Q ss_pred             ecC-CCcEEEEee-CCeEEEEecccC--CCCCeeeeeecCCC---------CCceEEEECCCCcEEEEeecCCcEEEEEC
Q 023822          169 YDD-QGLVFAVAF-GGYIRMFDARKY--EKGPFDIFSVGGDI---------SDANVVKFSNDGRLMLLTTMEGHIHVLDS  235 (276)
Q Consensus       169 ~~~-~~~~l~~~~-d~~i~~~d~~~~--~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  235 (276)
                      |+| ++.+++++. |+.|++|+++..  .........+..|.         ..|.+++|+|++++|++++.||.|++||+
T Consensus       201 ~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~  280 (342)
T 1yfq_A          201 LLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL  280 (342)
T ss_dssp             ECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred             ECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcC
Confidence            999 988888877 899999999875  10011133344443         48999999999999999999999999999


Q ss_pred             CCCcEEEEeecCCCC-CCceEEEEECCCCcEEEEecCCCC
Q 023822          236 FRGTLLSTYNVKPVS-RNSTLEASFSPEGMFVISGRVSPF  274 (276)
Q Consensus       236 ~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~~dg~  274 (276)
                      .+++.+..+.   +| ...|.+++  |++++|++++.||+
T Consensus       281 ~~~~~~~~~~---~~h~~~v~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          281 QTRKKIKNFA---KFNEDSVVKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             TTTEEEEECC---CCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred             ccHhHhhhhh---cccCCCceEec--CCCCeEEEEecCCc
Confidence            9999999888   67 89999999  99999999999997

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.9e-37  Score=251.54  Aligned_cols=240  Identities=10%  Similarity=0.098  Sum_probs=193.9

Q ss_pred             cCCCcEEEEEEcCCCCEEEEeecCCeEEEEEcc---CCeeeeeeeee------------eeceEEEE--EeccCCeEEEe
Q 023822           32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVT---AATCLKTINSK------------KYGVDLVC--FTSHPTTVIYS   94 (276)
Q Consensus        32 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~---~~~~~~~~~~~------------~~~v~~~~--~~~~~~~l~~~   94 (276)
                      +|.++|++++|+|++++|++++.||.|++||++   +++....+..+            ...+.++.  +++++..++++
T Consensus       109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  188 (437)
T 3gre_A          109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL  188 (437)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE
T ss_pred             cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE
Confidence            599999999999999999999999999999995   55544444332            33455555  45678899999


Q ss_pred             ccCCCCCceEEEEccCCceeeeecc--cCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe---ecCCCeeEe
Q 023822           95 SKNGWDESLRLLSLHDNKYLRYFKG--HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR---VQGRPAAAY  169 (276)
Q Consensus        95 ~~~~~d~~i~~~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~  169 (276)
                      +.   |+.|++||+++++.+..+..  |...|.+++|+|++++|++++.||.|++||+++++++..+.   ...+.++++
T Consensus       189 ~~---d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  265 (437)
T 3gre_A          189 TN---LSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEV  265 (437)
T ss_dssp             ET---TSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEE
T ss_pred             eC---CCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEe
Confidence            98   99999999999999999987  89999999999999999999999999999999998888763   334667854


Q ss_pred             c----CCCcEEEEee-CCeEEEEecccCCCCCeee----------e----------eecC--CCCCceEEEECCCCcEEE
Q 023822          170 D----DQGLVFAVAF-GGYIRMFDARKYEKGPFDI----------F----------SVGG--DISDANVVKFSNDGRLML  222 (276)
Q Consensus       170 ~----~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~----------~----------~~~~--~~~~i~~~~~~~~~~~l~  222 (276)
                      +    +++.++++++ |+.|++||+++++......          +          .+.+  |...|.+++|+ ++++|+
T Consensus       266 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~  344 (437)
T 3gre_A          266 CQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILL  344 (437)
T ss_dssp             CTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEE
T ss_pred             ccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEE
Confidence            4    5677888887 8999999998754210000          0          0112  66779999999 779999


Q ss_pred             EeecCCcEEEEECCCCcEEEEeecC----------------------------------CCCCCceEEEEECCC--CcEE
Q 023822          223 LTTMEGHIHVLDSFRGTLLSTYNVK----------------------------------PVSRNSTLEASFSPE--GMFV  266 (276)
Q Consensus       223 ~~~~dg~i~i~d~~~~~~~~~~~~~----------------------------------~~~~~~v~~~~~s~~--g~~l  266 (276)
                      +++.|+.|++||+.+++....+..+                                  ..|...|++++|+++  +.+|
T Consensus       345 s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l  424 (437)
T 3gre_A          345 TDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLL  424 (437)
T ss_dssp             EEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEE
T ss_pred             ecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEE
Confidence            9999999999999999887776631                                  027889999999998  8899


Q ss_pred             EEecCCCCC
Q 023822          267 ISGRVSPFS  275 (276)
Q Consensus       267 ~~~~~dg~v  275 (276)
                      ++|+.||+|
T Consensus       425 ~s~~~dG~I  433 (437)
T 3gre_A          425 VACDNSGLI  433 (437)
T ss_dssp             EEEETTSCE
T ss_pred             EEEcCCceE
Confidence            999999986

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=6.5e-37  Score=250.68  Aligned_cols=239  Identities=16%  Similarity=0.193  Sum_probs=188.3

Q ss_pred             ccceeeccCCCcEEEEEEcC-CCCEEEEeecCCeEEEEEccCCeeeeeeee--eeeceEEEEEeccCCeEEEeccCCCCC
Q 023822           25 EVGMSFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINS--KKYGVDLVCFTSHPTTVIYSSKNGWDE  101 (276)
Q Consensus        25 ~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~d~  101 (276)
                      .....+.+|.++|++++|+| ++++|++++.||+|++||++++........  +...+.+++|+|+++++++++.   |+
T Consensus       155 ~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~---dg  231 (435)
T 4e54_B          155 PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDN---VG  231 (435)
T ss_dssp             CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECS---SS
T ss_pred             eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeC---CC
Confidence            34455678999999999998 789999999999999999987654333332  3345789999999999999998   99


Q ss_pred             ceEEEEccCCceeeeecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCceeeeeE-----eecCCCeeEecCCCcE
Q 023822          102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLL-----RVQGRPAAAYDDQGLV  175 (276)
Q Consensus       102 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~  175 (276)
                      .|++||++. +.+..+.+|...|.+++|+|+++ +|++++.|+.|++||+++.+....+     +...+.+++|+|++.+
T Consensus       232 ~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~  310 (435)
T 4e54_B          232 NVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGAR  310 (435)
T ss_dssp             BEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSE
T ss_pred             cEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCe
Confidence            999999864 56778889999999999999876 7889999999999999987655443     4556789999999988


Q ss_pred             EEEee-CCeEEEEecccCCCCCeeeeeecCCC------CCceEEEECCCCcEEEEee------------cCCcEEEEECC
Q 023822          176 FAVAF-GGYIRMFDARKYEKGPFDIFSVGGDI------SDANVVKFSNDGRLMLLTT------------MEGHIHVLDSF  236 (276)
Q Consensus       176 l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~~~~------------~dg~i~i~d~~  236 (276)
                      |++++ |+.|++||+++++.    ...+..|.      ..+..+.|+|++.++++++            .++.|++||..
T Consensus       311 l~s~~~D~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~  386 (435)
T 4e54_B          311 LLTTDQKSEIRVYSASQWDC----PLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGN  386 (435)
T ss_dssp             EEEEESSSCEEEEESSSSSS----EEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSS
T ss_pred             eEEEcCCCEEEEEECCCCcc----ceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECC
Confidence            88877 99999999988664    22222221      1233456777776666553            34579999999


Q ss_pred             CCcEEEEeecCCCCCCceEEE-EECCCCcEEEEecCCCC
Q 023822          237 RGTLLSTYNVKPVSRNSTLEA-SFSPEGMFVISGRVSPF  274 (276)
Q Consensus       237 ~~~~~~~~~~~~~~~~~v~~~-~~s~~g~~l~~~~~dg~  274 (276)
                      +++.+..+..  +|...|.++ +|+|+|++|++|+ |+.
T Consensus       387 ~g~~~~~l~~--~~~~~v~s~~~fspdg~~lasg~-d~~  422 (435)
T 4e54_B          387 SGKMMCQLYD--PESSGISSLNEFNPMGDTLASAM-GYH  422 (435)
T ss_dssp             SCCEEEEECC--SSCCCCCCEEEECTTSSCEEEEC-SSE
T ss_pred             CCcEEEEEeC--CCCCcEEEEEEECCCCCEEEEEc-CCc
Confidence            9999888753  467788887 6999999999987 554

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=8e-36  Score=246.13  Aligned_cols=236  Identities=18%  Similarity=0.342  Sum_probs=206.4

Q ss_pred             ccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEec--cCCeEEEeccCCCC
Q 023822           23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTS--HPTTVIYSSKNGWD  100 (276)
Q Consensus        23 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~~d  100 (276)
                      ..+....+.+|.+.|.+++|+|++ .|++|+.||+|++||+.+++.+..+..|...|.+++|++  ++.++++++.   |
T Consensus       151 ~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~---d  226 (464)
T 3v7d_B          151 NKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSR---D  226 (464)
T ss_dssp             TTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEET---T
T ss_pred             CCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcC---C
Confidence            345677888999999999999987 999999999999999999999999999999999999994  6788999998   9


Q ss_pred             CceEEEEccCCce-----------------------eeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeee
Q 023822          101 ESLRLLSLHDNKY-----------------------LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG  157 (276)
Q Consensus       101 ~~i~~~d~~~~~~-----------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  157 (276)
                      +.|++||+++++.                       ...+.+|...+.++  +++++++++++.|+.|++||+++++.+.
T Consensus       227 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~  304 (464)
T 3v7d_B          227 NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLY  304 (464)
T ss_dssp             SCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEE
T ss_pred             CcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            9999999987653                       44567788888877  5788999999999999999999999888


Q ss_pred             eE--eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEE
Q 023822          158 LL--RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD  234 (276)
Q Consensus       158 ~~--~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  234 (276)
                      .+  +...+.+++|+|++.++++++ |+.|++||+++++.    ...+..|...+.+++|+  +++|++++.||.|++||
T Consensus       305 ~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~----~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd  378 (464)
T 3v7d_B          305 ILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL----MYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWD  378 (464)
T ss_dssp             EECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE----EEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred             EecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE----EEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEE
Confidence            87  456678999999998888887 89999999987654    66777899999999997  57899999999999999


Q ss_pred             CCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          235 SFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      +.+++......    +...+..++|+|++++|++|+ ||.+
T Consensus       379 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~-dg~i  414 (464)
T 3v7d_B          379 ANDYSRKFSYH----HTNLSAITTFYVSDNILVSGS-ENQF  414 (464)
T ss_dssp             TTTCCEEEEEE----CTTCCCEEEEEECSSEEEEEE-TTEE
T ss_pred             CCCCceeeeec----CCCCccEEEEEeCCCEEEEec-CCeE
Confidence            99988777765    667788899999999999998 6654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=4.5e-37  Score=248.35  Aligned_cols=233  Identities=10%  Similarity=0.009  Sum_probs=172.8

Q ss_pred             CcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeee-----eeeeeeeeceEEEEEec--------cCCeEEEeccCCCCC
Q 023822           35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL-----KTINSKKYGVDLVCFTS--------HPTTVIYSSKNGWDE  101 (276)
Q Consensus        35 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----~~~~~~~~~v~~~~~~~--------~~~~l~~~~~~~~d~  101 (276)
                      ..+....+.+++.+|++++.|++|+|||..+++..     ..+.+|...|.+++|+|        +++.|++++.   |+
T Consensus        90 ~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~---D~  166 (393)
T 4gq1_A           90 GDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD---DC  166 (393)
T ss_dssp             -------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET---TS
T ss_pred             CCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEEC---CC
Confidence            33333444456678999999999999999887643     34678999999999998        7889999998   99


Q ss_pred             ceEEEEccCCceeeeecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCceeeeeE---------------------
Q 023822          102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLL---------------------  159 (276)
Q Consensus       102 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~---------------------  159 (276)
                      +|++||+.++.+...+..|...+.+++|+|++. +|++++.|++|++||+++++.....                     
T Consensus       167 tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~  246 (393)
T 4gq1_A          167 TLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN  246 (393)
T ss_dssp             EEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred             eEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence            999999999988888888999999999999875 8999999999999999887644322                     


Q ss_pred             ------eecCCCeeEec-CCCcEEEEee-CCeEEEEecccCCCCCee---------------eeeecCCCCCceEEEECC
Q 023822          160 ------RVQGRPAAAYD-DQGLVFAVAF-GGYIRMFDARKYEKGPFD---------------IFSVGGDISDANVVKFSN  216 (276)
Q Consensus       160 ------~~~~~~~~~~~-~~~~~l~~~~-d~~i~~~d~~~~~~~~~~---------------~~~~~~~~~~i~~~~~~~  216 (276)
                            +...+.++.|. ++++.++++. |+.+++||+...+.....               ......+. ......|+|
T Consensus       247 ~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  325 (393)
T 4gq1_A          247 TCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFP-SLLGACPHP  325 (393)
T ss_dssp             -----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSC-CSSCCEECS
T ss_pred             eeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccC-cceeEEEcc
Confidence                  12234566665 7888777777 999999999875431100               00111111 222334444


Q ss_pred             --CCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCC
Q 023822          217 --DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPF  274 (276)
Q Consensus       217 --~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~  274 (276)
                        ++.++++|+.||.|++||+.+++....+.   .|..+|.+++|+|||++||+++++|.
T Consensus       326 ~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~---~~~~~V~svafspdG~~LA~as~~Gv  382 (393)
T 4gq1_A          326 RYMDYFATAHSQHGLIQLINTYEKDSNSIPI---QLGMPIVDFCWHQDGSHLAIATEGSV  382 (393)
T ss_dssp             SCTTEEEEEETTTTEEEEEETTCTTCCEEEE---ECSSCEEEEEECTTSSEEEEEESSEE
T ss_pred             CCCCEEEEEECCCCEEEEEECCCCcEEEEec---CCCCcEEEEEEcCCCCEEEEEeCCCe
Confidence              44567788899999999999999888777   57889999999999999999999985

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.2e-35  Score=240.75  Aligned_cols=230  Identities=17%  Similarity=0.220  Sum_probs=195.9

Q ss_pred             ccCCCc--EEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeee-eeeceEEEEEeccCCeEEEeccCCCCCceEEEE
Q 023822           31 RDYNGR--ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS  107 (276)
Q Consensus        31 ~~h~~~--v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d  107 (276)
                      .+|...  +.+++|++  ..+++++.|+.|++||+.+++....+.. |...|.+++|+|+++++++++.   ||.|++||
T Consensus        88 ~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~---dg~i~iwd  162 (401)
T 4aez_A           88 PGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLG---NGLVDIYD  162 (401)
T ss_dssp             TTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEET---TSCEEEEE
T ss_pred             CCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECC---CCeEEEEE
Confidence            366655  44466664  5688888999999999999988877765 6788999999999999999998   99999999


Q ss_pred             ccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccC-ceeeeeE--eecCCCeeEecCCCcEEEEee-CCe
Q 023822          108 LHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA-EKCQGLL--RVQGRPAAAYDDQGLVFAVAF-GGY  183 (276)
Q Consensus       108 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d~~  183 (276)
                      +.+++.+..+.+|...|.+++|  ++++|++++.||.|++||++. ......+  +...+.+++|+|++.++++++ |+.
T Consensus       163 ~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~  240 (401)
T 4aez_A          163 VESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNV  240 (401)
T ss_dssp             TTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             CcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCe
Confidence            9999999999999999999999  457999999999999999994 4445555  556678999999999888887 899


Q ss_pred             EEEEecccCCCCCeeeeeecCCCCCceEEEECCCC-cEEEEee--cCCcEEEEECCCCcEEEEeecCCCCCCceEEEEEC
Q 023822          184 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTT--MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS  260 (276)
Q Consensus       184 i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s  260 (276)
                      |++||+++.+.    ...+..|...|.+++|+|++ .++++++  .|+.|++||+.+++.+..+.    +...|.+++|+
T Consensus       241 v~iwd~~~~~~----~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~----~~~~v~~~~~s  312 (401)
T 4aez_A          241 VQIWDARSSIP----KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD----AGSQVTSLIWS  312 (401)
T ss_dssp             EEEEETTCSSE----EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE----CSSCEEEEEEC
T ss_pred             EEEccCCCCCc----cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe----CCCcEEEEEEC
Confidence            99999997553    55667888999999999976 5556654  79999999999999999887    66789999999


Q ss_pred             CCCcEEEE--ecCCCCC
Q 023822          261 PEGMFVIS--GRVSPFS  275 (276)
Q Consensus       261 ~~g~~l~~--~~~dg~v  275 (276)
                      |++++|++  |+.||.+
T Consensus       313 ~~~~~l~~~~g~~dg~i  329 (401)
T 4aez_A          313 PHSKEIMSTHGFPDNNL  329 (401)
T ss_dssp             SSSSEEEEEECTTTCEE
T ss_pred             CCCCeEEEEeecCCCcE
Confidence            99999999  5578764

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=4.5e-35  Score=240.48  Aligned_cols=235  Identities=17%  Similarity=0.303  Sum_probs=186.4

Q ss_pred             ccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceE
Q 023822           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (276)
Q Consensus        25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~  104 (276)
                      +....+.+|...|.+++|+  ++.|++++.||.|++||+.+++.+..+..|...+.++.|  +++.+++++.   |+.|+
T Consensus       190 ~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~---dg~i~  262 (445)
T 2ovr_B          190 ECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAY---DFMVK  262 (445)
T ss_dssp             EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEET---TSCEE
T ss_pred             cEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcC---CCEEE
Confidence            4456677788888888875  456888888888888888888877777778888888877  6777888877   88888


Q ss_pred             EEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEee-CCe
Q 023822          105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF-GGY  183 (276)
Q Consensus       105 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-d~~  183 (276)
                      +||+++++.+..+.+|...|.+++|  +++++++++.|+.|++||+++++....+..+......+.+++.++++++ |+.
T Consensus       263 iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~  340 (445)
T 2ovr_B          263 VWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADST  340 (445)
T ss_dssp             EEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSC
T ss_pred             EEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCe
Confidence            8888888888888888888888888  7778888888888888888888887777544444444445566666666 899


Q ss_pred             EEEEecccCCCCCeeeeeecC---CCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecC--CCCCCceEEEE
Q 023822          184 IRMFDARKYEKGPFDIFSVGG---DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK--PVSRNSTLEAS  258 (276)
Q Consensus       184 i~~~d~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~v~~~~  258 (276)
                      |++||+++++.    ...+..   |...|.+++|+  +++|++++.||.|++||+.+++.+..+...  ..+.+.|.+++
T Consensus       341 i~vwd~~~~~~----~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  414 (445)
T 2ovr_B          341 VKIWDIKTGQC----LQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIR  414 (445)
T ss_dssp             EEEEETTTCCE----EEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEE
T ss_pred             EEEEECCCCcE----EEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEE
Confidence            99999987553    334433   77889999996  579999999999999999999999888311  14778999999


Q ss_pred             ECCCCcEEEEecCCCC
Q 023822          259 FSPEGMFVISGRVSPF  274 (276)
Q Consensus       259 ~s~~g~~l~~~~~dg~  274 (276)
                      |+|++.+|++|+.||+
T Consensus       415 ~s~~~~~la~~~~dg~  430 (445)
T 2ovr_B          415 ASNTKLVCAVGSRNGT  430 (445)
T ss_dssp             ECSSEEEEEEECSSSS
T ss_pred             ecCCEEEEEEcccCCC
Confidence            9999999999999996

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1e-35  Score=231.69  Aligned_cols=210  Identities=12%  Similarity=0.142  Sum_probs=174.2

Q ss_pred             cccceeeccCCCcEEEEEEcC--CCCEEEEeecCCeEEEEEccCCe--eeeeeeeeeeceEEEEEecc--CCeEEEeccC
Q 023822           24 MEVGMSFRDYNGRISSMDFHK--SSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSH--PTTVIYSSKN   97 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~   97 (276)
                      .+...++.+|.++|++++|+|  ++++|++|+.|++|++||+++++  .+..+..|...|.+++|+|+  +..+++++. 
T Consensus        43 ~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~-  121 (297)
T 2pm7_B           43 HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASS-  121 (297)
T ss_dssp             BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEET-
T ss_pred             cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEEC-
Confidence            355678999999999999986  38999999999999999998774  55667788999999999997  889999998 


Q ss_pred             CCCCceEEEEccCCce--eeeecccCcceEEEEeccC-------------CCEEEEeeCCCeEEEEeccCce----eeee
Q 023822           98 GWDESLRLLSLHDNKY--LRYFKGHHDRVVSLSLCSS-------------KDCFISGSLDRTVLLWDQRAEK----CQGL  158 (276)
Q Consensus        98 ~~d~~i~~~d~~~~~~--~~~~~~~~~~i~~~~~~~~-------------~~~l~~~~~d~~i~iwd~~~~~----~~~~  158 (276)
                        |+.|++||++++..  ...+.+|...|.+++|+|+             +++|++++.|++|++||+++.+    ....
T Consensus       122 --d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~  199 (297)
T 2pm7_B          122 --DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST  199 (297)
T ss_dssp             --TSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEE
T ss_pred             --CCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEE
Confidence              99999999987642  4567789999999999997             5699999999999999998765    3444


Q ss_pred             E--eecCCCeeEecCCC---cEEEEee-CCeEEEEecccCCCCCe-eeeeecCCCCCceEEEECCCCcEEEEeecCCcEE
Q 023822          159 L--RVQGRPAAAYDDQG---LVFAVAF-GGYIRMFDARKYEKGPF-DIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIH  231 (276)
Q Consensus       159 ~--~~~~~~~~~~~~~~---~~l~~~~-d~~i~~~d~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  231 (276)
                      +  |...+.+++|+|++   .+|++++ |+.|++||++....... .......+...+.+++|+|+|++|++++.||.|+
T Consensus       200 l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~  279 (297)
T 2pm7_B          200 LEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVT  279 (297)
T ss_dssp             ECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEE
T ss_pred             ecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEE
Confidence            4  45568899999984   7777776 99999999987432111 1222245678899999999999999999999999


Q ss_pred             EEECC
Q 023822          232 VLDSF  236 (276)
Q Consensus       232 i~d~~  236 (276)
                      +|+..
T Consensus       280 lw~~~  284 (297)
T 2pm7_B          280 LWKEN  284 (297)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99976

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.2e-35  Score=269.49  Aligned_cols=206  Identities=19%  Similarity=0.286  Sum_probs=175.0

Q ss_pred             ccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEec--cCCeEEEeccCCCC
Q 023822           23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTS--HPTTVIYSSKNGWD  100 (276)
Q Consensus        23 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~~d  100 (276)
                      +.+....+.+|.+.|.+++|+|++++|++++.|+.|++||+.+++.+..+..|...|.+++|+|  ++..+++++.   |
T Consensus       646 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~---d  722 (1249)
T 3sfz_A          646 TGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSN---D  722 (1249)
T ss_dssp             TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEET---T
T ss_pred             CCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeC---C
Confidence            3456677889999999999999999999999999999999999999999999999999999999  4557888887   9


Q ss_pred             CceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe--------------------
Q 023822          101 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR--------------------  160 (276)
Q Consensus       101 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--------------------  160 (276)
                      +.|++||+.+++....+.+|...|.+++|+|+++++++++.||.|++||+++++....+.                    
T Consensus       723 ~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  802 (1249)
T 3sfz_A          723 FFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVK  802 (1249)
T ss_dssp             SCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBC
T ss_pred             CeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEE
Confidence            999999999999999999999999999999999999999999999999998776544331                    


Q ss_pred             -------------------------------------ecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeee
Q 023822          161 -------------------------------------VQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSV  202 (276)
Q Consensus       161 -------------------------------------~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~  202 (276)
                                                           ...+.+++|+|++.+++++. |+.|++||+.++..    ...+
T Consensus       803 ~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~----~~~~  878 (1249)
T 3sfz_A          803 CCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLK----VADC  878 (1249)
T ss_dssp             CCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEE----EEEE
T ss_pred             EEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce----eeec
Confidence                                                 22345677777777777776 78888888876443    5556


Q ss_pred             cCCCCCceEEEECCCCcEEEEeecCCcEEEEEC
Q 023822          203 GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDS  235 (276)
Q Consensus       203 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  235 (276)
                      .+|...|.+++|+|+|++|++++.||.|++|++
T Consensus       879 ~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~  911 (1249)
T 3sfz_A          879 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWET  911 (1249)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEH
T ss_pred             CCCccceEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence            678888888888888888888888888888874

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.7e-35  Score=233.22  Aligned_cols=212  Identities=18%  Similarity=0.226  Sum_probs=172.2

Q ss_pred             ccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeee--------------------------------
Q 023822           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTI--------------------------------   72 (276)
Q Consensus        25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--------------------------------   72 (276)
                      .+...+++|...|.+++|+|++++|++++.|+.|++|+..........                                
T Consensus        77 ~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d  156 (340)
T 4aow_A           77 IPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN  156 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             eeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEE
Confidence            345678999999999999999999999999999999998654332222                                


Q ss_pred             -----------eeeeeceEEEEEeccC--CeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEe
Q 023822           73 -----------NSKKYGVDLVCFTSHP--TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISG  139 (276)
Q Consensus        73 -----------~~~~~~v~~~~~~~~~--~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  139 (276)
                                 ..|...+..++|++++  ..+++++.   |+.|++||+++++....+.+|.+.|.+++|+|++++|+++
T Consensus       157 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~---d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~  233 (340)
T 4aow_A          157 TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGW---DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASG  233 (340)
T ss_dssp             TTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEET---TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             eCCCceEEEEeccccCcccceEEccCCCCcEEEEEcC---CCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEE
Confidence                       2234556777777654  34566665   8999999999999989999999999999999999999999


Q ss_pred             eCCCeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEeeCCeEEEEecccCCC-----CCeeeeeecCCCCCceEEE
Q 023822          140 SLDRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEK-----GPFDIFSVGGDISDANVVK  213 (276)
Q Consensus       140 ~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~-----~~~~~~~~~~~~~~i~~~~  213 (276)
                      +.|+.|++||+++.+.+..+ ....+..+.++|++.+++++.|+.|++||++....     ..........|...|++++
T Consensus       234 s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  313 (340)
T 4aow_A          234 GKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLA  313 (340)
T ss_dssp             ETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEE
T ss_pred             eCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEE
Confidence            99999999999999988887 44457789999999999999999999999986432     1111223446788999999


Q ss_pred             ECCCCcEEEEeecCCcEEEEECCCCc
Q 023822          214 FSNDGRLMLLTTMEGHIHVLDSFRGT  239 (276)
Q Consensus       214 ~~~~~~~l~~~~~dg~i~i~d~~~~~  239 (276)
                      |+|+|++|++|+.||.|+|||+.+|+
T Consensus       314 ~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          314 WSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             ECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             ECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            99999999999999999999999886

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-35  Score=259.32  Aligned_cols=232  Identities=10%  Similarity=0.145  Sum_probs=189.8

Q ss_pred             eccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEcc
Q 023822           30 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH  109 (276)
Q Consensus        30 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~  109 (276)
                      ..+|.+.|++++|+|++++||+|+.||+|+||+..+.+....+. |..+|.+++|+| +++|++++.   |+.|++||+.
T Consensus        13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~---D~~v~lWd~~   87 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINA---KDTVYVLSLY   87 (902)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEET---TCEEEEEETT
T ss_pred             ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEEC---cCeEEEEECC
Confidence            34899999999999999999999999999999998877665543 677899999999 888999988   9999999999


Q ss_pred             CCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeee-----------eE--eecCCCeeEecCCC-cE
Q 023822          110 DNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG-----------LL--RVQGRPAAAYDDQG-LV  175 (276)
Q Consensus       110 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-----------~~--~~~~~~~~~~~~~~-~~  175 (276)
                      +++.+..+. |...|++++|+|++++|++|+.||.|++||+++++...           .+  +...+.+++|+|++ ..
T Consensus        88 ~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~  166 (902)
T 2oaj_A           88 SQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGT  166 (902)
T ss_dssp             TCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEE
T ss_pred             CCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCE
Confidence            999888886 77899999999999999999999999999999887531           11  44578899999964 55


Q ss_pred             EEEee-CCeEEEEecccCCCCCeeeeeecC------------------CCCCceEEEECCCCcEEEEeecCCcEEEEECC
Q 023822          176 FAVAF-GGYIRMFDARKYEKGPFDIFSVGG------------------DISDANVVKFSNDGRLMLLTTMEGHIHVLDSF  236 (276)
Q Consensus       176 l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~------------------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  236 (276)
                      ++++. |+.| +||+++.+.    ...+..                  |...|.+++|+|+|++|++++.||.|++||++
T Consensus       167 l~~g~~dg~v-lWd~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~  241 (902)
T 2oaj_A          167 VLISYEYVTL-TYSLVENEI----KQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDAN  241 (902)
T ss_dssp             EEEECSSCEE-EEETTTTEE----EEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETT
T ss_pred             EEEEeCCCcE-EEECCCCce----EEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence            55555 8999 999987543    222222                  34679999999999999999999999999999


Q ss_pred             CCcEEEE--ee---cCC----------CCCCceEEEEEC----CCC-cEEEEecCC
Q 023822          237 RGTLLST--YN---VKP----------VSRNSTLEASFS----PEG-MFVISGRVS  272 (276)
Q Consensus       237 ~~~~~~~--~~---~~~----------~~~~~v~~~~~s----~~g-~~l~~~~~d  272 (276)
                      +++++..  +.   .+.          .+...|.+++|+    |++ .+|++|+.|
T Consensus       242 ~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~  297 (902)
T 2oaj_A          242 SGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSI  297 (902)
T ss_dssp             TCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECS
T ss_pred             CCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCC
Confidence            9988764  21   010          134579999995    554 567777665

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.8e-35  Score=242.11  Aligned_cols=231  Identities=19%  Similarity=0.302  Sum_probs=200.6

Q ss_pred             ccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCc
Q 023822           23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES  102 (276)
Q Consensus        23 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~  102 (276)
                      +.+....+.+|.+.|.+++|  ++++|++|+.||.|++||+.+++.+..+..|...|.+++|+  +..+++++.   |+.
T Consensus       162 ~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~---dg~  234 (435)
T 1p22_A          162 TLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSK---DRS  234 (435)
T ss_dssp             SCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEET---TSC
T ss_pred             CCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeC---CCc
Confidence            45566788899999999999  68899999999999999999999999999999999999996  458999988   999


Q ss_pred             eEEEEccCCcee---eeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEee--cCCCeeEecCCCcEEE
Q 023822          103 LRLLSLHDNKYL---RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV--QGRPAAAYDDQGLVFA  177 (276)
Q Consensus       103 i~~~d~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~l~  177 (276)
                      |++||+.+++..   ..+.+|...|.+++|  +++++++++.||.|++||+++++.+..+..  ..+.++.+  ++.+++
T Consensus       235 i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~  310 (435)
T 1p22_A          235 IAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVV  310 (435)
T ss_dssp             EEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEE
T ss_pred             EEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEE
Confidence            999999988765   677889999999999  778999999999999999999998888844  34556666  455666


Q ss_pred             Eee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCc---------EEEEeecC
Q 023822          178 VAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT---------LLSTYNVK  247 (276)
Q Consensus       178 ~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~  247 (276)
                      +++ |+.|++||+++++.    ...+..|...+.+++|  ++++|++|+.||.|++||+.+++         .+..+.  
T Consensus       311 ~g~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--  382 (435)
T 1p22_A          311 SGSSDNTIRLWDIECGAC----LRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV--  382 (435)
T ss_dssp             EEETTSCEEEEETTTCCE----EEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC--
T ss_pred             EEeCCCeEEEEECCCCCE----EEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeecc--
Confidence            665 99999999998654    6667789999999999  78899999999999999987766         777777  


Q ss_pred             CCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          248 PVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       248 ~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                       +|.+.|.+++|  ++++|++|+.||+|
T Consensus       383 -~h~~~v~~l~~--~~~~l~s~s~Dg~i  407 (435)
T 1p22_A          383 -EHSGRVFRLQF--DEFQIVSSSHDDTI  407 (435)
T ss_dssp             -CCSSCCCCEEE--CSSCEEECCSSSEE
T ss_pred             -CCCCCeEEEEe--CCCEEEEEeCCCEE
Confidence             78999999999  78899999999975

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-36  Score=241.65  Aligned_cols=222  Identities=13%  Similarity=0.109  Sum_probs=177.8

Q ss_pred             EEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEcc---------CC
Q 023822           41 DFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH---------DN  111 (276)
Q Consensus        41 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~---------~~  111 (276)
                      .+.+++++|++|+.||+|++||+.+++.+..+.  ...|..+.|+|+   +++++.   |+.|++|+..         ++
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~---D~~i~~w~~~~~~~~~~~~~~  114 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGP---CNRLLLLYPGNQITILDSKTN  114 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECS---TTEEEEEETTTEEEEEETTTC
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecC---CCeEEEEEccCceEEeecCCc
Confidence            445678899999999999999999999888776  457888889888   888887   9999999765         44


Q ss_pred             ceeeeec-ccCcceEEEEecc--CCCEEEEeeCCCeEEEEeccCceeeeeE---eecCCCeeEecCCCcEEEEee-CCeE
Q 023822          112 KYLRYFK-GHHDRVVSLSLCS--SKDCFISGSLDRTVLLWDQRAEKCQGLL---RVQGRPAAAYDDQGLVFAVAF-GGYI  184 (276)
Q Consensus       112 ~~~~~~~-~~~~~i~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~-d~~i  184 (276)
                      +.+..+. .|...|.+++|+|  +++++++++.|++|++||+++++.....   +...+.+++|+|++.++++++ |+.|
T Consensus       115 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i  194 (343)
T 3lrv_A          115 KVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGIL  194 (343)
T ss_dssp             CEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCE
T ss_pred             ceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEE
Confidence            4344443 6778999999999  9999999999999999999999886555   233588999999999999877 9999


Q ss_pred             EEEecccCCCCCeeeeeecC-CCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceE--EEEECC
Q 023822          185 RMFDARKYEKGPFDIFSVGG-DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTL--EASFSP  261 (276)
Q Consensus       185 ~~~d~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~--~~~~s~  261 (276)
                      ++||+++++..   ...+.. |..+|.+++|+|+|.+|++++ |+.|++||+++++.+..+.....+...+.  +++|+|
T Consensus       195 ~iwd~~~~~~~---~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (343)
T 3lrv_A          195 DVYNLSSPDQA---SSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD  270 (343)
T ss_dssp             EEEESSCTTSC---CEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECT
T ss_pred             EEEECCCCCCC---ccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECC
Confidence            99999987642   134455 889999999999999999999 55999999999887666553212333443  699999


Q ss_pred             CCcEEEEecC-CCC
Q 023822          262 EGMFVISGRV-SPF  274 (276)
Q Consensus       262 ~g~~l~~~~~-dg~  274 (276)
                      +|++|++++. |+.
T Consensus       271 ~g~~l~~~s~~d~~  284 (343)
T 3lrv_A          271 SGKNMIAYSNESNS  284 (343)
T ss_dssp             TSSEEEEEETTTTE
T ss_pred             CCCEEEEecCCCCc
Confidence            9999999877 664

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=4.7e-35  Score=233.43  Aligned_cols=238  Identities=11%  Similarity=0.133  Sum_probs=182.9

Q ss_pred             ccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceE
Q 023822           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (276)
Q Consensus        25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~  104 (276)
                      ++...+..|...|++++|+||+++|++|+.++ +++|++++++.......  ..+..+.+.++++.++..+..  |+.|+
T Consensus        10 ~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--d~~v~   84 (355)
T 3vu4_A           10 NPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGV--KEVVH   84 (355)
T ss_dssp             ---------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSS--TTEEE
T ss_pred             CCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECC--ccEEE
Confidence            34455688999999999999999999998775 78999988776654432  257888999998888554432  88999


Q ss_pred             EEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCc-eeeeeEeecCCCeeEecCCCcEEEE--ee-
Q 023822          105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE-KCQGLLRVQGRPAAAYDDQGLVFAV--AF-  180 (276)
Q Consensus       105 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~--~~-  180 (276)
                      +||+.+++.+..+. +...|.+++|+++.  ++++ .|+.|++||+.+. +.+..+.. ....+++++  .+++.  +. 
T Consensus        85 iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~-~~~~~~~s~--~~la~~sg~~  157 (355)
T 3vu4_A           85 IWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR-FGGVCEFSN--GLLVYSNEFN  157 (355)
T ss_dssp             EEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE-EEEEEEEET--TEEEEEESSC
T ss_pred             EEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc-CCceEEEEc--cEEEEeCCCc
Confidence            99999999988887 67799999998764  4444 4789999999988 66666644 444566777  44444  34 


Q ss_pred             CCeEEEEecccCCCC------C-----ee-eeeecCCCCCceEEEECCCCcEEEEeecCCc-EEEEECCCCcEEEEeecC
Q 023822          181 GGYIRMFDARKYEKG------P-----FD-IFSVGGDISDANVVKFSNDGRLMLLTTMEGH-IHVLDSFRGTLLSTYNVK  247 (276)
Q Consensus       181 d~~i~~~d~~~~~~~------~-----~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~  247 (276)
                      +|.|++||+++....      .     .. ...+.+|..+|.+++|+|+|++|++++.|++ |++||+.+++++..+...
T Consensus       158 ~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g  237 (355)
T 3vu4_A          158 LGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRG  237 (355)
T ss_dssp             TTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECT
T ss_pred             CcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC
Confidence            899999999875410      0     01 4556789999999999999999999999998 999999999999988731


Q ss_pred             CCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          248 PVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       248 ~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                       .|...|.+++|+|+|++|++++.|++|
T Consensus       238 -~h~~~v~~~~~s~~~~~l~s~s~d~~v  264 (355)
T 3vu4_A          238 -LDRADVVDMKWSTDGSKLAVVSDKWTL  264 (355)
T ss_dssp             -TCCSCEEEEEECTTSCEEEEEETTCEE
T ss_pred             -CCCCcEEEEEECCCCCEEEEEECCCEE
Confidence             178999999999999999999999875

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.1e-35  Score=240.02  Aligned_cols=233  Identities=13%  Similarity=0.083  Sum_probs=192.4

Q ss_pred             eeccCCCcEEEEEEcCCCCEE-EEeecCCeEEEEEcc--CCeeeeeee--eeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822           29 SFRDYNGRISSMDFHKSSSYL-VTASDDESIRLYDVT--AATCLKTIN--SKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (276)
Q Consensus        29 ~~~~h~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i  103 (276)
                      ...+|.+.|.+++|+|++++| ++++.||.|++||+.  +++.+..+.  .+...|.+++|+|++++|++++.   ++.+
T Consensus        97 ~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---~g~v  173 (450)
T 2vdu_B           97 GAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADK---FGDV  173 (450)
T ss_dssp             ---CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEET---TSEE
T ss_pred             CCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeC---CCcE
Confidence            345788899999999999996 899999999999999  888888876  45578999999999999999998   9999


Q ss_pred             EEEEccCCceee----eecccCcceEEEEeccC---CCEEEEeeCCCeEEEEeccCceeeeeE---eecCCCeeEecCCC
Q 023822          104 RLLSLHDNKYLR----YFKGHHDRVVSLSLCSS---KDCFISGSLDRTVLLWDQRAEKCQGLL---RVQGRPAAAYDDQG  173 (276)
Q Consensus       104 ~~~d~~~~~~~~----~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~  173 (276)
                      ++|++.+++...    .+.+|...|.+++|+|+   +++|++++.|+.|++||+++++.+..+   +...+.+++|+ ++
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~  252 (450)
T 2vdu_B          174 YSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KD  252 (450)
T ss_dssp             EEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-ST
T ss_pred             EEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CC
Confidence            999998877554    77889999999999999   999999999999999999988877663   55667899999 99


Q ss_pred             cEEEEee-CCeEEEEecccCCCCCeeeeeec-----------------------CCCCCceEEEECCCCcEEEEee-cCC
Q 023822          174 LVFAVAF-GGYIRMFDARKYEKGPFDIFSVG-----------------------GDISDANVVKFSNDGRLMLLTT-MEG  228 (276)
Q Consensus       174 ~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~-----------------------~~~~~i~~~~~~~~~~~l~~~~-~dg  228 (276)
                      .+|++++ |+.|++||+++++.  .......                       .....+.+++|+|++++|++++ .|+
T Consensus       253 ~~l~s~~~d~~v~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~  330 (450)
T 2vdu_B          253 YLLLSAGGDDKIFAWDWKTGKN--LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATK  330 (450)
T ss_dssp             TEEEEEESSSEEEEEETTTCCE--EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCS
T ss_pred             CEEEEEeCCCeEEEEECCCCcE--eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCC
Confidence            8888877 89999999988653  1111110                       2335688999999999999998 899


Q ss_pred             cEEEEEC--CCC---cEEEEeecCCCCCCceEEEEECCCCcEEEEecC
Q 023822          229 HIHVLDS--FRG---TLLSTYNVKPVSRNSTLEASFSPEGMFVISGRV  271 (276)
Q Consensus       229 ~i~i~d~--~~~---~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  271 (276)
                      .|++|++  .++   +.+..+.   .+ ..|.+++|+|++.++++++.
T Consensus       331 ~i~iw~~~~~~~~~l~~~~~~~---~~-~~v~~~~~~~~~~~v~~~~~  374 (450)
T 2vdu_B          331 CIIILEMSEKQKGDLALKQIIT---FP-YNVISLSAHNDEFQVTLDNK  374 (450)
T ss_dssp             EEEEEEECSSSTTCEEEEEEEE---CS-SCEEEEEEETTEEEEEECCT
T ss_pred             eEEEEEeccCCCCceeeccEec---cC-CceEEEEecCCcEEEEEecc
Confidence            9999999  665   5666666   45 88999999997655555544

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=6.6e-36  Score=234.76  Aligned_cols=208  Identities=14%  Similarity=0.179  Sum_probs=171.5

Q ss_pred             cceeeccCCCcEEEEEEcC--CCCEEEEeecCCeEEEEEccCCe--eeeeeeeeeeceEEEEEecc--CCeEEEeccCCC
Q 023822           26 VGMSFRDYNGRISSMDFHK--SSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSH--PTTVIYSSKNGW   99 (276)
Q Consensus        26 ~~~~~~~h~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~~   99 (276)
                      ....+++|.++|.+++|+|  ++++|++|+.|++|++||+++++  ....+..|...|.+++|+|+  +..+++++.   
T Consensus        49 ~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~---  125 (316)
T 3bg1_A           49 LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSS---  125 (316)
T ss_dssp             EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECS---
T ss_pred             EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcC---
Confidence            4567889999999999986  48999999999999999998873  56677889999999999998  788999998   


Q ss_pred             CCceEEEEccCCce---eeeecccCcceEEEEeccC-----------------CCEEEEeeCCCeEEEEeccCc---eee
Q 023822          100 DESLRLLSLHDNKY---LRYFKGHHDRVVSLSLCSS-----------------KDCFISGSLDRTVLLWDQRAE---KCQ  156 (276)
Q Consensus       100 d~~i~~~d~~~~~~---~~~~~~~~~~i~~~~~~~~-----------------~~~l~~~~~d~~i~iwd~~~~---~~~  156 (276)
                      |+.|++||++.+..   ...+.+|...|.+++|+|+                 +++|++++.|++|++||++..   +..
T Consensus       126 D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~  205 (316)
T 3bg1_A          126 DGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEE  205 (316)
T ss_dssp             SSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEE
T ss_pred             CCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcccee
Confidence            99999999987632   3456789999999999997                 468999999999999999754   344


Q ss_pred             eeE--eecCCCeeEecCCC----cEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCc
Q 023822          157 GLL--RVQGRPAAAYDDQG----LVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGH  229 (276)
Q Consensus       157 ~~~--~~~~~~~~~~~~~~----~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  229 (276)
                      ..+  |...+.+++|+|++    .+|++++ |+.|++||++...........+..|...|.+++|+|++++|++++.|+.
T Consensus       206 ~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~  285 (316)
T 3bg1_A          206 QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNK  285 (316)
T ss_dssp             ECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSC
T ss_pred             eecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCe
Confidence            444  55568899999986    6676666 9999999998632211112223456789999999999999999999999


Q ss_pred             EEEEECC
Q 023822          230 IHVLDSF  236 (276)
Q Consensus       230 i~i~d~~  236 (276)
                      |++|+..
T Consensus       286 v~lw~~~  292 (316)
T 3bg1_A          286 VTLWKES  292 (316)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            9999975

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=9e-35  Score=247.45  Aligned_cols=240  Identities=11%  Similarity=0.098  Sum_probs=209.6

Q ss_pred             ccceeeccCCCc-EEEEEEcC--CCCEEEEeecCCeEEEEEccCC--------eeeeeeeeeeeceEEEEEeccCCeEEE
Q 023822           25 EVGMSFRDYNGR-ISSMDFHK--SSSYLVTASDDESIRLYDVTAA--------TCLKTINSKKYGVDLVCFTSHPTTVIY   93 (276)
Q Consensus        25 ~~~~~~~~h~~~-v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~   93 (276)
                      +....+.+|.+. |++++|+|  ++++|++++.||.|++||+.++        +....+..|..+|.+++|+|+++++++
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  133 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV  133 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence            567788999999 99999999  9999999999999999999754        677788889999999999999999999


Q ss_pred             eccCCCC----CceEEEEccCCceeeeecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCceeeeeE--eec---C
Q 023822           94 SSKNGWD----ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLL--RVQ---G  163 (276)
Q Consensus        94 ~~~~~~d----~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~--~~~---~  163 (276)
                      ++.   +    +.|++||  .++.+..+.+|...|.+++|+|+++ ++++++.|+.|++||+++.+....+  +..   .
T Consensus       134 ~~~---~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~  208 (615)
T 1pgu_A          134 VGE---GRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSF  208 (615)
T ss_dssp             EEC---CSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCC
T ss_pred             ecc---CCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCce
Confidence            986   4    6788887  6778888999999999999999998 8999999999999999999988887  444   6


Q ss_pred             CCeeEecCC-CcEEEEee-CCeEEEEecccCCCCCeeeeee-c---CCCCCceEEEECCCCcEEEEeecCCcEEEEECCC
Q 023822          164 RPAAAYDDQ-GLVFAVAF-GGYIRMFDARKYEKGPFDIFSV-G---GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR  237 (276)
Q Consensus       164 ~~~~~~~~~-~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~-~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  237 (276)
                      +.+++|+|+ +.+++++. |+.|++||+++++.    ...+ .   .|...|.+++|+ ++++|++++.|+.|++||+.+
T Consensus       209 v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~  283 (615)
T 1pgu_A          209 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF----LKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTT  283 (615)
T ss_dssp             EEEEEECSTTCCEEEEEETTCCEEEEETTTCCE----EEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTT
T ss_pred             EEEEEECCCCCCEEEEEeCCCeEEEEECCCCCE----eEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCC
Confidence            779999999 98888777 89999999987653    4444 4   788899999999 999999999999999999999


Q ss_pred             CcEEEEeecC-CCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          238 GTLLSTYNVK-PVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       238 ~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      ++.+..+..+ ......+.++.|+ +++++++++.||.+
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i  321 (615)
T 1pgu_A          284 SKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTL  321 (615)
T ss_dssp             TEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCE
T ss_pred             CcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCE
Confidence            9999888732 1124678888886 89999999999875

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=4.1e-35  Score=234.53  Aligned_cols=197  Identities=13%  Similarity=0.120  Sum_probs=165.6

Q ss_pred             cCCCcEEEEEEcCCCCEEEE--eecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEcc
Q 023822           32 DYNGRISSMDFHKSSSYLVT--ASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH  109 (276)
Q Consensus        32 ~h~~~v~~~~~~~~~~~l~~--~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~  109 (276)
                      .+...+.+++|+|||++|++  ++.|++|+|||+++++++..+. |...|.+++|+|+++++++++    ++.+.+|+..
T Consensus       131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s----~~~~~~~~~~  205 (365)
T 4h5i_A          131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYIT----GSSLEVISTV  205 (365)
T ss_dssp             CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEEC----SSCEEEEETT
T ss_pred             CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecc----ceeEEEEEec
Confidence            35566899999999999865  4478999999999999988876 667899999999999999987    6667788877


Q ss_pred             CCceee--eecccCcceEEEEeccCCCEEEEeeCCC----eEEEEeccCceeee----eE--eecCCCeeEecCCCcEEE
Q 023822          110 DNKYLR--YFKGHHDRVVSLSLCSSKDCFISGSLDR----TVLLWDQRAEKCQG----LL--RVQGRPAAAYDDQGLVFA  177 (276)
Q Consensus       110 ~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d~----~i~iwd~~~~~~~~----~~--~~~~~~~~~~~~~~~~l~  177 (276)
                      +++.+.  ....|...|.+++|+|+++++++++.|+    .+++||+.......    .+  +...+.+++|+|++++|+
T Consensus       206 ~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~la  285 (365)
T 4h5i_A          206 TGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAV  285 (365)
T ss_dssp             TCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEE
T ss_pred             cCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceE
Confidence            776553  3456888999999999999999999887    68899988765432    22  345678999999999999


Q ss_pred             Eee-CCeEEEEecccCCCCCeeeee-ecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCC
Q 023822          178 VAF-GGYIRMFDARKYEKGPFDIFS-VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR  237 (276)
Q Consensus       178 ~~~-d~~i~~~d~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  237 (276)
                      +++ |+.|++||+++++.    +.. +.+|..+|++++|+|||++|++||.|++|+|||+..
T Consensus       286 sgs~D~~V~iwd~~~~~~----~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          286 LASNDNSIALVKLKDLSM----SKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             EEETTSCEEEEETTTTEE----EEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             EEcCCCEEEEEECCCCcE----EEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            888 89999999988653    444 468999999999999999999999999999999864

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2.3e-35  Score=251.06  Aligned_cols=234  Identities=10%  Similarity=0.077  Sum_probs=203.6

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCC----eeeeeeeeeeec-eEEEEEec--cCCeEEEeccCCCCCce
Q 023822           31 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA----TCLKTINSKKYG-VDLVCFTS--HPTTVIYSSKNGWDESL  103 (276)
Q Consensus        31 ~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~-v~~~~~~~--~~~~l~~~~~~~~d~~i  103 (276)
                      ..|.+.|.+++|+|++++|++++ ++.|++||+.++    +....+..|... |.+++|+|  +++++++++.   |+.|
T Consensus        15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~---dg~v   90 (615)
T 1pgu_A           15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDE---SGKV   90 (615)
T ss_dssp             CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEET---TSEE
T ss_pred             CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecC---CCEE
Confidence            36889999999999999999998 789999999998    889999999999 99999999  9999999998   9999


Q ss_pred             EEEEccCC--------ceeeeecccCcceEEEEeccCCCEEEEeeCC----CeEEEEeccCceeeeeE--eecCCCeeEe
Q 023822          104 RLLSLHDN--------KYLRYFKGHHDRVVSLSLCSSKDCFISGSLD----RTVLLWDQRAEKCQGLL--RVQGRPAAAY  169 (276)
Q Consensus       104 ~~~d~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~--~~~~~~~~~~  169 (276)
                      ++||+.++        +....+..|...|.+++|+|++++|++++.+    +.|++||  .++....+  +...+.+++|
T Consensus        91 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~  168 (615)
T 1pgu_A           91 IVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHL  168 (615)
T ss_dssp             EEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEE
T ss_pred             EEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEE
Confidence            99999754        6677888899999999999999999999988    6899998  34444444  5566889999


Q ss_pred             cCCCc-EEEEee-CCeEEEEecccCCCCCeeeeeecCCCC---CceEEEECCC-CcEEEEeecCCcEEEEECCCCcEEEE
Q 023822          170 DDQGL-VFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDIS---DANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLST  243 (276)
Q Consensus       170 ~~~~~-~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~  243 (276)
                      +|++. +++++. |+.|++||+++.+.    ...+..|..   .|.+++|+|+ +++|++++.||.|++||+.+++.+..
T Consensus       169 ~~~~~~~l~~~~~d~~v~vwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  244 (615)
T 1pgu_A          169 KQSRPMRSMTVGDDGSVVFYQGPPFKF----SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY  244 (615)
T ss_dssp             CSSSSCEEEEEETTTEEEEEETTTBEE----EEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEE
T ss_pred             CCCCCcEEEEEeCCCcEEEEeCCCcce----eeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEE
Confidence            99996 555555 89999999887553    556777888   8999999999 99999999999999999999999888


Q ss_pred             e-ecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          244 Y-NVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       244 ~-~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      + .....|...|.+++|+ ++++|++++.||.+
T Consensus       245 ~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i  276 (615)
T 1pgu_A          245 IEDDQEPVQGGIFALSWL-DSQKFATVGADATI  276 (615)
T ss_dssp             CCBTTBCCCSCEEEEEES-SSSEEEEEETTSEE
T ss_pred             ecccccccCCceEEEEEc-CCCEEEEEcCCCcE
Confidence            8 2111378999999999 99999999999865

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.8e-35  Score=239.40  Aligned_cols=233  Identities=12%  Similarity=0.041  Sum_probs=193.5

Q ss_pred             CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCe---eeeeeeee-----------------------------------
Q 023822           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT---CLKTINSK-----------------------------------   75 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~-----------------------------------   75 (276)
                      ..++.+++|+|+|++|+++ .++.|++||+.+++   .+..+..+                                   
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            3578999999999966665 57899999999988   55555422                                   


Q ss_pred             -------------------eeceEEEEEeccCCeE-EEeccCCCCCceEEEEcc--CCceeeeec--ccCcceEEEEecc
Q 023822           76 -------------------KYGVDLVCFTSHPTTV-IYSSKNGWDESLRLLSLH--DNKYLRYFK--GHHDRVVSLSLCS  131 (276)
Q Consensus        76 -------------------~~~v~~~~~~~~~~~l-~~~~~~~~d~~i~~~d~~--~~~~~~~~~--~~~~~i~~~~~~~  131 (276)
                                         ...|.+++|+|++++| ++++.   |+.|++||+.  +++.+..+.  .|...|.+++|+|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp  159 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADS---DKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE  159 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGG---GTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECC---CCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC
Confidence                               2269999999999996 77777   9999999999  888888776  5678999999999


Q ss_pred             CCCEEEEeeCCCeEEEEeccCceeee----eE--eecCCCeeEecCC---CcEEEEee-CCeEEEEecccCCCCCeeeee
Q 023822          132 SKDCFISGSLDRTVLLWDQRAEKCQG----LL--RVQGRPAAAYDDQ---GLVFAVAF-GGYIRMFDARKYEKGPFDIFS  201 (276)
Q Consensus       132 ~~~~l~~~~~d~~i~iwd~~~~~~~~----~~--~~~~~~~~~~~~~---~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~  201 (276)
                      ++++|++++.++.|++|++.+.+...    .+  +...+.+++|+|+   +++|++++ |+.|++||+++++.    ...
T Consensus       160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~----~~~  235 (450)
T 2vdu_B          160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI----VDK  235 (450)
T ss_dssp             TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTC----EEE
T ss_pred             CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCce----eee
Confidence            99999999999999999998876543    33  5566889999999   88888777 89999999987653    333


Q ss_pred             -ecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCC----------------------CCCCceEEEE
Q 023822          202 -VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP----------------------VSRNSTLEAS  258 (276)
Q Consensus       202 -~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----------------------~~~~~v~~~~  258 (276)
                       ..+|...|.+++|+ ++++|++++.|+.|++||+.+++++..+....                      .....|.+++
T Consensus       236 ~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  314 (450)
T 2vdu_B          236 WLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKII  314 (450)
T ss_dssp             ECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEE
T ss_pred             eecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEE
Confidence             45788999999999 99999999999999999999999888876210                      1245789999


Q ss_pred             ECCCCcEEEEec-CCCCC
Q 023822          259 FSPEGMFVISGR-VSPFS  275 (276)
Q Consensus       259 ~s~~g~~l~~~~-~dg~v  275 (276)
                      |+|++++|++++ .|+.|
T Consensus       315 ~~~~~~~l~~~~~~d~~i  332 (450)
T 2vdu_B          315 KSKNLPFVAFFVEATKCI  332 (450)
T ss_dssp             ECSSSSEEEEEETTCSEE
T ss_pred             EeCCCCEEEEEECCCCeE
Confidence            999999999998 77654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=3.6e-35  Score=238.04  Aligned_cols=232  Identities=14%  Similarity=0.178  Sum_probs=192.4

Q ss_pred             CcEEEEEEcCCCCEEE-EeecCCeEEEEEccCCe----eeeeeeeeeeceEEEEEec-cCCeEEEeccCCCCCceEEEEc
Q 023822           35 GRISSMDFHKSSSYLV-TASDDESIRLYDVTAAT----CLKTINSKKYGVDLVCFTS-HPTTVIYSSKNGWDESLRLLSL  108 (276)
Q Consensus        35 ~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~d~~i~~~d~  108 (276)
                      .....++++|+...++ +++.||.|+||++....    ....+.+|...|.+++|+| +++.|++++.   |+.|++||+
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~---dg~v~vw~~  111 (402)
T 2aq5_A           35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSE---DCTVMVWEI  111 (402)
T ss_dssp             CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEET---TSEEEEEEC
T ss_pred             cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeC---CCeEEEEEc
Confidence            3445688998765444 57889999999996542    3445778999999999999 8999999998   999999999


Q ss_pred             cCC-------ceeeeecccCcceEEEEeccCC-CEEEEeeCCCeEEEEeccCceeeeeE----eecCCCeeEecCCCcEE
Q 023822          109 HDN-------KYLRYFKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLL----RVQGRPAAAYDDQGLVF  176 (276)
Q Consensus       109 ~~~-------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~l  176 (276)
                      .++       +++..+.+|...|.+++|+|++ ++|++++.|+.|++||+++++....+    +...+.+++|+|++.+|
T Consensus       112 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  191 (402)
T 2aq5_A          112 PDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI  191 (402)
T ss_dssp             CTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCE
T ss_pred             cCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEE
Confidence            987       5678889999999999999998 69999999999999999999988877    55667899999999888


Q ss_pred             EEee-CCeEEEEecccCCCCCeeeeee-cCCCCC-ceEEEECCCCcEEEEe---ecCCcEEEEECCCCcE-EEEeecCCC
Q 023822          177 AVAF-GGYIRMFDARKYEKGPFDIFSV-GGDISD-ANVVKFSNDGRLMLLT---TMEGHIHVLDSFRGTL-LSTYNVKPV  249 (276)
Q Consensus       177 ~~~~-d~~i~~~d~~~~~~~~~~~~~~-~~~~~~-i~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~-~~~~~~~~~  249 (276)
                      ++++ |+.|++||+++++.    ...+ ..|... +.+++|+|++++|++|   +.|+.|++||+.+++. +.....  .
T Consensus       192 ~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~--~  265 (402)
T 2aq5_A          192 CTSCRDKRVRVIEPRKGTV----VAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL--D  265 (402)
T ss_dssp             EEEETTSEEEEEETTTTEE----EEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC--C
T ss_pred             EEEecCCcEEEEeCCCCce----eeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec--c
Confidence            7777 99999999987553    4444 456554 8999999999999999   7999999999988765 333321  3


Q ss_pred             CCCceEEEEECCCCcEEE-EecCCCCC
Q 023822          250 SRNSTLEASFSPEGMFVI-SGRVSPFS  275 (276)
Q Consensus       250 ~~~~v~~~~~s~~g~~l~-~~~~dg~v  275 (276)
                      +...+.+++|+|++++|+ +|+.||.|
T Consensus       266 ~~~~v~~~~~s~~~~~l~~~g~~dg~i  292 (402)
T 2aq5_A          266 TSSGVLLPFFDPDTNIVYLCGKGDSSI  292 (402)
T ss_dssp             CCSSCEEEEEETTTTEEEEEETTCSCE
T ss_pred             CCCceeEEEEcCCCCEEEEEEcCCCeE
Confidence            677899999999999986 55678865

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.4e-34  Score=235.45  Aligned_cols=223  Identities=15%  Similarity=0.278  Sum_probs=195.0

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccC
Q 023822           31 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD  110 (276)
Q Consensus        31 ~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~  110 (276)
                      .+|...|.++++  ++++|++|+.||.|++||+.+++....+.+|...|.+++|  +++.+++++.   ||.|++||+.+
T Consensus       130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~---dg~i~vwd~~~  202 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSS---DSTVRVWDVNT  202 (435)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEET---TSCEEEEESSS
T ss_pred             cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcC---CCeEEEEECCC
Confidence            456778998887  7899999999999999999999999999999999999999  7889999998   99999999999


Q ss_pred             CceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceee---eeE--eecCCCeeEecCCCcEEEEee-CCeE
Q 023822          111 NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ---GLL--RVQGRPAAAYDDQGLVFAVAF-GGYI  184 (276)
Q Consensus       111 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~--~~~~~~~~~~~~~~~~l~~~~-d~~i  184 (276)
                      ++.+..+.+|...|.+++|+  ++.+++++.||.|++||+++++..   ..+  +...+.++.+  ++.++++++ |+.|
T Consensus       203 ~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i  278 (435)
T 1p22_A          203 GEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTI  278 (435)
T ss_dssp             CCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEE
T ss_pred             CcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeE
Confidence            99999999999999999996  458999999999999999987655   333  3344556666  666666666 9999


Q ss_pred             EEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCc
Q 023822          185 RMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM  264 (276)
Q Consensus       185 ~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  264 (276)
                      ++||+++++.    ...+..|...+.+++|  +++++++|+.||.|++||+.+++.+..+.   +|...|.+++|  +++
T Consensus       279 ~vwd~~~~~~----~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~~~~--~~~  347 (435)
T 1p22_A          279 KVWNTSTCEF----VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE---GHEELVRCIRF--DNK  347 (435)
T ss_dssp             EEEETTTCCE----EEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEEC---CCSSCEEEEEC--CSS
T ss_pred             EEEECCcCcE----EEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEe---CCcCcEEEEEe--cCC
Confidence            9999988654    5666788889999998  46799999999999999999999999998   78999999999  788


Q ss_pred             EEEEecCCCCC
Q 023822          265 FVISGRVSPFS  275 (276)
Q Consensus       265 ~l~~~~~dg~v  275 (276)
                      +|++|+.||.|
T Consensus       348 ~l~sg~~dg~i  358 (435)
T 1p22_A          348 RIVSGAYDGKI  358 (435)
T ss_dssp             EEEEEETTSCE
T ss_pred             EEEEEeCCCcE
Confidence            99999999976

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.3e-35  Score=239.37  Aligned_cols=227  Identities=10%  Similarity=0.078  Sum_probs=180.8

Q ss_pred             cCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCe-----------------------------eeeeee-eeeeceEE
Q 023822           32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT-----------------------------CLKTIN-SKKYGVDL   81 (276)
Q Consensus        32 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----------------------------~~~~~~-~~~~~v~~   81 (276)
                      .-...|.+++|+|||+++|+++.|++|+  |...++                             ....+. .|...|.+
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~   90 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRV   90 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEE
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEE
Confidence            4457899999999999999999999995  433222                             111111 34677999


Q ss_pred             EEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCc-----ceEEEEeccCCCEEEEeeCCCeEEEEeccCcee-
Q 023822           82 VCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHD-----RVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC-  155 (276)
Q Consensus        82 ~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-  155 (276)
                      ++|+|+|+.+++++.   ||.|++||...  .+..+. |..     .+.+++|+|+|++|++|+.||+|++||+..+.. 
T Consensus        91 vawSPdG~~LAs~s~---dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~  164 (588)
T 2j04_A           91 CKPSPIDDWMAVLSN---NGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSEN  164 (588)
T ss_dssp             EEECSSSSCEEEEET---TSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTT
T ss_pred             EEECCCCCEEEEEeC---CCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccc
Confidence            999999999999998   99999999544  566666 665     499999999999999999999999999998752 


Q ss_pred             ------eeeE------eecCCCeeEecCCCcEEEEeeCCeEEEEecccCCCCCeeeeee-cCCCCCceEEEECCCCcEEE
Q 023822          156 ------QGLL------RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSV-GGDISDANVVKFSNDGRLML  222 (276)
Q Consensus       156 ------~~~~------~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~  222 (276)
                            +..+      |...+.+++|+|++ +++++.|+.|++||+....... ....+ ..|...|.+++|+  |+.||
T Consensus       165 ~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~-~~~tL~~~h~~~V~svaFs--g~~LA  240 (588)
T 2j04_A          165 TPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQP-VSRMIQNASRRKITDLKIV--DYKVV  240 (588)
T ss_dssp             CCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCC-CEEEEECCCSSCCCCEEEE--TTEEE
T ss_pred             cccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCcccc-ceeeecccccCcEEEEEEE--CCEEE
Confidence                  3343      23467899999999 7777779999999998755311 11233 3677899999999  68898


Q ss_pred             EeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEE--CCCCcEEEEecCCCC
Q 023822          223 LTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF--SPEGMFVISGRVSPF  274 (276)
Q Consensus       223 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~--s~~g~~l~~~~~dg~  274 (276)
                      +++ ++.|++||+.+++......   +|...+.+++|  +||+..|+++++||+
T Consensus       241 Sa~-~~tIkLWd~~~~~~~~~~~---gh~~~V~~va~~~s~d~~~La~a~edG~  290 (588)
T 2j04_A          241 LTC-PGYVHKIDLKNYSISSLKT---GSLENFHIIPLNHEKESTILLMSNKTSY  290 (588)
T ss_dssp             EEC-SSEEEEEETTTTEEEEEEC---SCCSCCCEEEETTCSSCEEEEECSSCEE
T ss_pred             EEe-CCeEEEEECCCCeEEEEEc---CCCceEEEEEeeeCCCCCEEEEEcCCCC
Confidence            887 6999999998887754443   58999999999  999999999999986

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.2e-33  Score=231.97  Aligned_cols=234  Identities=17%  Similarity=0.302  Sum_probs=204.0

Q ss_pred             ccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCc
Q 023822           23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES  102 (276)
Q Consensus        23 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~  102 (276)
                      +.+....+.+|.+.|.+++|+  +++|++|+.||+|++||+.+++.+..+..|...|.++.|+  ++.+++++.   |+.
T Consensus       148 ~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~---dg~  220 (445)
T 2ovr_B          148 TGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSR---DAT  220 (445)
T ss_dssp             TCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEET---TSE
T ss_pred             CCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeC---CCE
Confidence            345667888999999999998  5799999999999999999999999999999999999994  678999988   999


Q ss_pred             eEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe--ecCCCeeEecCCCcEEEEee
Q 023822          103 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR--VQGRPAAAYDDQGLVFAVAF  180 (276)
Q Consensus       103 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~  180 (276)
                      |++||+.+++.+..+.+|...|.+++|  +++++++++.|+.|++||+++++....+.  ...+.++.+  ++..+++++
T Consensus       221 i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~  296 (445)
T 2ovr_B          221 LRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGS  296 (445)
T ss_dssp             EEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEE
T ss_pred             EEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEe
Confidence            999999999999999999999999999  78899999999999999999999888884  344556666  666666666


Q ss_pred             -CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEE
Q 023822          181 -GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF  259 (276)
Q Consensus       181 -d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~  259 (276)
                       |+.|++||+++++.    ...+..|...+.++.+  +++++++++.||.|++||+.+++.+..+..+..|...|.+++|
T Consensus       297 ~d~~i~i~d~~~~~~----~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~  370 (445)
T 2ovr_B          297 LDTSIRVWDVETGNC----IHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF  370 (445)
T ss_dssp             TTSCEEEEETTTCCE----EEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE
T ss_pred             CCCeEEEEECCCCCE----EEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEE
Confidence             99999999988654    5566778888888777  4679999999999999999999999999854458899999999


Q ss_pred             CCCCcEEEEecCCCCC
Q 023822          260 SPEGMFVISGRVSPFS  275 (276)
Q Consensus       260 s~~g~~l~~~~~dg~v  275 (276)
                      +  +++|++|+.||.|
T Consensus       371 ~--~~~l~s~~~dg~v  384 (445)
T 2ovr_B          371 N--KNFVITSSDDGTV  384 (445)
T ss_dssp             C--SSEEEEEETTSEE
T ss_pred             C--CCEEEEEeCCCeE
Confidence            6  5799999999975

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-34  Score=255.13  Aligned_cols=125  Identities=18%  Similarity=0.214  Sum_probs=106.6

Q ss_pred             cceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeee-----------eeeeeeeeceEEEEEecc-CCeEEE
Q 023822           26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL-----------KTINSKKYGVDLVCFTSH-PTTVIY   93 (276)
Q Consensus        26 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----------~~~~~~~~~v~~~~~~~~-~~~l~~   93 (276)
                      ....+. |.+.|++++|+|++++|++|+.||.|++||+.+++..           ..+..|..+|.+++|+|+ +..+++
T Consensus        91 ~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~  169 (902)
T 2oaj_A           91 VLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLI  169 (902)
T ss_dssp             EEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEE
T ss_pred             EEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEE
Confidence            344454 6789999999999999999999999999999988754           234568889999999996 467888


Q ss_pred             eccCCCCCceEEEEccCCceeeeeccc------------------CcceEEEEeccCCCEEEEeeCCCeEEEEeccCcee
Q 023822           94 SSKNGWDESLRLLSLHDNKYLRYFKGH------------------HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC  155 (276)
Q Consensus        94 ~~~~~~d~~i~~~d~~~~~~~~~~~~~------------------~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  155 (276)
                      ++.   |+.| +||+++++.+..+..|                  ...|.+++|+|++++|++++.|++|++||++++++
T Consensus       170 g~~---dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~  245 (902)
T 2oaj_A          170 SYE---YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHM  245 (902)
T ss_dssp             ECS---SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCE
T ss_pred             EeC---CCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcE
Confidence            877   9999 9999999888877655                  47799999999999999999999999999876543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-34  Score=236.72  Aligned_cols=221  Identities=12%  Similarity=0.182  Sum_probs=179.8

Q ss_pred             cCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeee-----ceEEEEEeccCCeEEEeccCCCCCceEEE
Q 023822           32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKY-----GVDLVCFTSHPTTVIYSSKNGWDESLRLL  106 (276)
Q Consensus        32 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~~~~d~~i~~~  106 (276)
                      .|...|.+++|+|+|++||+++.||.|++||.+.  ++..+. |..     .+.+++|+|++++|++++.   ||+|++|
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~---DGtVkIW  156 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNE---DGELQFF  156 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEET---TSEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcC---CCEEEEE
Confidence            5688999999999999999999999999999644  666666 654     4999999999999999999   9999999


Q ss_pred             EccCCce-------eeee----cccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceee---eeE---eecCCCeeEe
Q 023822          107 SLHDNKY-------LRYF----KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ---GLL---RVQGRPAAAY  169 (276)
Q Consensus       107 d~~~~~~-------~~~~----~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~---~~~~~~~~~~  169 (276)
                      |+.+++.       +.++    .+|...|.+++|+|++  +++++.|++|++||+..++..   ..+   +...+..++|
T Consensus       157 d~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaF  234 (588)
T 2j04_A          157 SIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKI  234 (588)
T ss_dssp             ECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEE
T ss_pred             ECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEE
Confidence            9998753       5665    6788899999999999  888899999999999887742   233   3456889999


Q ss_pred             cCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEE--CCCCcEEEEeecCCcEEEEECCC------C---
Q 023822          170 DDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKF--SNDGRLMLLTTMEGHIHVLDSFR------G---  238 (276)
Q Consensus       170 ~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~dg~i~i~d~~~------~---  238 (276)
                      +  +..+++++++.|++||+.+.+.    .....+|...+..++|  +|++..|++++.||. ++|....      +   
T Consensus       235 s--g~~LASa~~~tIkLWd~~~~~~----~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~  307 (588)
T 2j04_A          235 V--DYKVVLTCPGYVHKIDLKNYSI----SSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIA  307 (588)
T ss_dssp             E--TTEEEEECSSEEEEEETTTTEE----EEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSH
T ss_pred             E--CCEEEEEeCCeEEEEECCCCeE----EEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEE
Confidence            9  5777777789999999987442    2233379999999999  999999999999999 9998642      1   


Q ss_pred             --------------cEEEEeecCCCCCCceEEEEECCCCcEEEEecC
Q 023822          239 --------------TLLSTYNVKPVSRNSTLEASFSPEGMFVISGRV  271 (276)
Q Consensus       239 --------------~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  271 (276)
                                    +.+..+    .+...|.+++|||||+.+|+++.
T Consensus       308 a~~d~~v~lW~~~g~~l~~~----~~~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          308 PYLEKKFKKWSTIWNEFNNY----ETTLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             HHHHHHHHHTTTTTTSSSSS----CCEEEEEEEEECTTSSEEEEEEE
T ss_pred             EEcCCEEEEEECCCCceeee----ccceEEEEEEECCCCCEEEEEEe
Confidence                          111111    12446899999999999998864

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-33  Score=226.83  Aligned_cols=213  Identities=12%  Similarity=0.139  Sum_probs=180.7

Q ss_pred             ccccceeeccCCCcEEEEEEcCC--CCEEEEeecCCeEEEEEccCCe--eeeeeeeeeeceEEEEEecc--CCeEEEecc
Q 023822           23 SMEVGMSFRDYNGRISSMDFHKS--SSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSH--PTTVIYSSK   96 (276)
Q Consensus        23 ~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~   96 (276)
                      ..+....+.+|.++|++++|+++  +++|++++.||.|++||+.+++  .+..+..|...|.+++|+|+  +..+++++.
T Consensus        44 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~  123 (379)
T 3jrp_A           44 THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS  123 (379)
T ss_dssp             EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred             cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecC
Confidence            45566788899999999999987  8999999999999999999987  67778889999999999999  899999998


Q ss_pred             CCCCCceEEEEccCCc--eeeeecccCcceEEEEecc-------------CCCEEEEeeCCCeEEEEeccCceee----e
Q 023822           97 NGWDESLRLLSLHDNK--YLRYFKGHHDRVVSLSLCS-------------SKDCFISGSLDRTVLLWDQRAEKCQ----G  157 (276)
Q Consensus        97 ~~~d~~i~~~d~~~~~--~~~~~~~~~~~i~~~~~~~-------------~~~~l~~~~~d~~i~iwd~~~~~~~----~  157 (276)
                         |+.|++||+.++.  ....+..|...|.+++|+|             ++++|++++.|+.|++||++.....    .
T Consensus       124 ---d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  200 (379)
T 3jrp_A          124 ---DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES  200 (379)
T ss_dssp             ---TSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEE
T ss_pred             ---CCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEE
Confidence               9999999998874  3446678999999999999             6899999999999999999876432    2


Q ss_pred             eE--eecCCCeeEecCC---CcEEEEee-CCeEEEEecccCCCCC-eeeeeecCCCCCceEEEECCCCcEEEEeecCCcE
Q 023822          158 LL--RVQGRPAAAYDDQ---GLVFAVAF-GGYIRMFDARKYEKGP-FDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHI  230 (276)
Q Consensus       158 ~~--~~~~~~~~~~~~~---~~~l~~~~-d~~i~~~d~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  230 (276)
                      .+  +...+.+++|+|+   +.++++++ |+.|++||++...... ........+...+.+++|+|+|++|++++.||.|
T Consensus       201 ~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i  280 (379)
T 3jrp_A          201 TLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKV  280 (379)
T ss_dssp             EECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSE
T ss_pred             EEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcE
Confidence            33  4556789999999   88888877 9999999998864321 1233334577899999999999999999999999


Q ss_pred             EEEECCCC
Q 023822          231 HVLDSFRG  238 (276)
Q Consensus       231 ~i~d~~~~  238 (276)
                      ++|++..+
T Consensus       281 ~iw~~~~~  288 (379)
T 3jrp_A          281 TLWKENLE  288 (379)
T ss_dssp             EEEEEEET
T ss_pred             EEEeCCCC
Confidence            99998743

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=2.8e-33  Score=221.83  Aligned_cols=218  Identities=17%  Similarity=0.221  Sum_probs=183.8

Q ss_pred             ccceeeccCCCcEEEEEEcC--CCCEEEEeecCCeEEEEEccCC---------eeeeeeeeeeeceEEEEEecc--CCeE
Q 023822           25 EVGMSFRDYNGRISSMDFHK--SSSYLVTASDDESIRLYDVTAA---------TCLKTINSKKYGVDLVCFTSH--PTTV   91 (276)
Q Consensus        25 ~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l   91 (276)
                      +....+.+|..+|++++|+|  ++++|++++.||.|++||+.++         +.+..+..|...|.+++|+|+  +.++
T Consensus        48 ~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  127 (351)
T 3f3f_A           48 ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL  127 (351)
T ss_dssp             EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEE
T ss_pred             eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEE
Confidence            45677889999999999999  6999999999999999999876         567788889999999999999  9999


Q ss_pred             EEeccCCCCCceEEEEccCCceeeeec-------------ccCcceEEEEeccC---CCEEEEeeCCCeEEEEeccCcee
Q 023822           92 IYSSKNGWDESLRLLSLHDNKYLRYFK-------------GHHDRVVSLSLCSS---KDCFISGSLDRTVLLWDQRAEKC  155 (276)
Q Consensus        92 ~~~~~~~~d~~i~~~d~~~~~~~~~~~-------------~~~~~i~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~  155 (276)
                      ++++.   |+.|++||+++++.+..+.             .|...+.+++|+|+   +.++++++.|+.+.+|+...++.
T Consensus       128 ~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~  204 (351)
T 3f3f_A          128 ACLGN---DGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL  204 (351)
T ss_dssp             EEEET---TCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCE
T ss_pred             EEecC---CCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCce
Confidence            99998   9999999999887554432             57888999999997   88999999999998888877664


Q ss_pred             --eeeE--eecCCCeeEecCCC----cEEEEee-CCeEEEEecccCCCC-------------------------------
Q 023822          156 --QGLL--RVQGRPAAAYDDQG----LVFAVAF-GGYIRMFDARKYEKG-------------------------------  195 (276)
Q Consensus       156 --~~~~--~~~~~~~~~~~~~~----~~l~~~~-d~~i~~~d~~~~~~~-------------------------------  195 (276)
                        ...+  +...+.+++|+|++    .++++++ |+.|++||++.....                               
T Consensus       205 ~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (351)
T 3f3f_A          205 HVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNT  284 (351)
T ss_dssp             EEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------
T ss_pred             eeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccccccc
Confidence              3333  45567899999998    6777777 899999999874210                               


Q ss_pred             -----------CeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEee
Q 023822          196 -----------PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  245 (276)
Q Consensus       196 -----------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  245 (276)
                                 ......+..|...|++++|+|++++|++++.||.|++|++.+++.+..+.
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~  345 (351)
T 3f3f_A          285 EEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS  345 (351)
T ss_dssp             ------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred             ceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence                       12344566788999999999999999999999999999999887766654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=6.9e-32  Score=217.80  Aligned_cols=238  Identities=12%  Similarity=0.129  Sum_probs=193.8

Q ss_pred             cccceeeccCCCcEEEEEEcCCCCEE-EEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCc
Q 023822           24 MEVGMSFRDYNGRISSMDFHKSSSYL-VTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES  102 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~  102 (276)
                      .+....+..|. .+.+++|+|++++| ++++.|+.|++||+.+++.+..+..+. .+.+++|+|+++++++++..  ++.
T Consensus        22 ~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~--~~~   97 (391)
T 1l0q_A           22 NKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMA--SST   97 (391)
T ss_dssp             TEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETT--TTE
T ss_pred             CeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECC--CCE
Confidence            34555666664 48999999999977 677789999999999999988887665 89999999999988766542  799


Q ss_pred             eEEEEccCCceeeeecccCcceEEEEeccCCCEE-EEeeCCCeEEEEeccCceeeeeEe-ecCCCeeEecCCCcEEE-Ee
Q 023822          103 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF-ISGSLDRTVLLWDQRAEKCQGLLR-VQGRPAAAYDDQGLVFA-VA  179 (276)
Q Consensus       103 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~l~-~~  179 (276)
                      |++||+.+++.+..+..+ ..+.+++|+|+++.+ ++++.++.|++||+++++....+. ...+..++|+|+++.++ ++
T Consensus        98 v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~  176 (391)
T 1l0q_A           98 LSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVAN  176 (391)
T ss_dssp             EEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEE
T ss_pred             EEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEe
Confidence            999999999888877744 568999999999977 688889999999999998887774 34457899999997764 44


Q ss_pred             e-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEee---cCCcEEEEECCCCcEEEEeecCCCCCCceE
Q 023822          180 F-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT---MEGHIHVLDSFRGTLLSTYNVKPVSRNSTL  255 (276)
Q Consensus       180 ~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  255 (276)
                      . ++.|++||+++.+.    .... .+...+.+++|+|+|++|++++   .++.|++||+.+++.+..+.   .+ ..+.
T Consensus       177 ~~~~~v~~~d~~~~~~----~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~---~~-~~~~  247 (391)
T 1l0q_A          177 FDSMSISVIDTVTNSV----IDTV-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP---VG-PDPA  247 (391)
T ss_dssp             TTTTEEEEEETTTTEE----EEEE-ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE---CC-SSEE
T ss_pred             CCCCEEEEEECCCCeE----EEEE-ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEe---cC-CCcc
Confidence            4 79999999987542    2222 2445789999999999999887   68999999999999988887   33 4578


Q ss_pred             EEEECCCCcEE-EEecCCCCC
Q 023822          256 EASFSPEGMFV-ISGRVSPFS  275 (276)
Q Consensus       256 ~~~~s~~g~~l-~~~~~dg~v  275 (276)
                      +++|+|+|++| ++++.|+.+
T Consensus       248 ~~~~s~dg~~l~~s~~~d~~v  268 (391)
T 1l0q_A          248 GIAVTPDGKKVYVALSFXNTV  268 (391)
T ss_dssp             EEEECTTSSEEEEEETTTTEE
T ss_pred             EEEEccCCCEEEEEcCCCCEE
Confidence            99999999877 666777754

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.3e-32  Score=222.74  Aligned_cols=228  Identities=18%  Similarity=0.216  Sum_probs=192.0

Q ss_pred             EEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeee--eeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCcee
Q 023822           37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN--SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL  114 (276)
Q Consensus        37 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~  114 (276)
                      ++.|+|+++ +.||+| .|++|+|||..+++....+.  .|...|++++|+|++++|++++.   |+.|++||+.+++.+
T Consensus       108 ~~~l~wS~~-n~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~---Dg~v~iWd~~~~~~~  182 (420)
T 4gga_A          108 LNLVDWSSG-NVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTS---SAEVQLWDVQQQKRL  182 (420)
T ss_dssp             CBCEEECTT-SEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEET---TSCEEEEETTTTEEE
T ss_pred             ceeEEECCC-CEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEEC---CCeEEEEEcCCCcEE
Confidence            567999975 577776 48999999999998877665  56678999999999999999998   999999999999999


Q ss_pred             eeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCcee-eeeE--eecCCCeeEecCCCcEEEEee-CCeEEEEecc
Q 023822          115 RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC-QGLL--RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDAR  190 (276)
Q Consensus       115 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~--~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~  190 (276)
                      ..+.+|...+.++++  ++..|++++.|+.+++||.+.... +..+  +...+..+.++|++.+++++. |+.+++|+..
T Consensus       183 ~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~  260 (420)
T 4gga_A          183 RNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA  260 (420)
T ss_dssp             EEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred             EEEeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeec
Confidence            999999999998877  467999999999999999887543 3334  455677899999999888887 8999999998


Q ss_pred             cCCCCCeeeeeecCCCCCceEEEECCCC-cEEEE--eecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEE
Q 023822          191 KYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLL--TTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVI  267 (276)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  267 (276)
                      .++...........|...|.+++|+|.+ .++++  |+.|+.|++||+.+++++..+.    +...+.++.|+|+++.++
T Consensus       261 ~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~----~~~~v~~~~~~~~~~~lv  336 (420)
T 4gga_A          261 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD----AHSQVCSILWSPHYKELI  336 (420)
T ss_dssp             CCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE----CSSCEEEEEEETTTTEEE
T ss_pred             cccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec----cccceeeeeecCCCCeEE
Confidence            8765555566677888999999999975 45554  4579999999999999999887    457899999999999887


Q ss_pred             Eec--CCCCC
Q 023822          268 SGR--VSPFS  275 (276)
Q Consensus       268 ~~~--~dg~v  275 (276)
                      +++  .||.|
T Consensus       337 ~~sg~~d~~I  346 (420)
T 4gga_A          337 SGHGFAQNQL  346 (420)
T ss_dssp             EEECTTTCCE
T ss_pred             EEEecCCCEE
Confidence            754  67754

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=5e-32  Score=221.50  Aligned_cols=235  Identities=11%  Similarity=0.161  Sum_probs=197.6

Q ss_pred             eeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEc
Q 023822           29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL  108 (276)
Q Consensus        29 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~  108 (276)
                      .+.+|.+.|.+++|+|+++++++++.|+.|++||+++++.+..+..|...+.+++|+|+++.+++++..  ++.|++||+
T Consensus       164 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~i~~~d~  241 (433)
T 3bws_A          164 KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWI--SEDISVIDR  241 (433)
T ss_dssp             HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETT--TTEEEEEET
T ss_pred             cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecC--CCcEEEEEC
Confidence            456899999999999999999999999999999999999999998888899999999999988665531  899999999


Q ss_pred             cCCceeeeecccCcceEEEEeccCCCEEEEee--------CCCeEEEEeccCceeeeeE-eecCCCeeEecCCCcEE-EE
Q 023822          109 HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS--------LDRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVF-AV  178 (276)
Q Consensus       109 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--------~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l-~~  178 (276)
                      ++++.+..+..+ ..+.+++|+|+++++++++        .|+.|++||+++++....+ +...+..++|+|+++.+ ++
T Consensus       242 ~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~  320 (433)
T 3bws_A          242 KTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVS  320 (433)
T ss_dssp             TTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEE
T ss_pred             CCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEE
Confidence            999888877654 5589999999999998888        4889999999998877766 44567789999999644 44


Q ss_pred             ee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeec---------------CCcEEEEECCCCcEEE
Q 023822          179 AF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM---------------EGHIHVLDSFRGTLLS  242 (276)
Q Consensus       179 ~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------------dg~i~i~d~~~~~~~~  242 (276)
                      +. ++.|++||+++++.    ...+ .+...+.+++|+|+|++|++++.               ||.|++||+.+++.+.
T Consensus       321 ~~~~~~v~v~d~~~~~~----~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~  395 (433)
T 3bws_A          321 DMCCSKIEVYDLKEKKV----QKSI-PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKE  395 (433)
T ss_dssp             ETTTTEEEEEETTTTEE----EEEE-ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEE
T ss_pred             ecCCCEEEEEECCCCcE----EEEe-cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEE
Confidence            44 89999999986542    2222 25567899999999998888876               5799999999999998


Q ss_pred             EeecCCCCCCceEEEEECCCCcEEEEecC-CCCC
Q 023822          243 TYNVKPVSRNSTLEASFSPEGMFVISGRV-SPFS  275 (276)
Q Consensus       243 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~v  275 (276)
                      .+.    ....+.+++|+|+|++|++++. |+.+
T Consensus       396 ~~~----~~~~~~~~~~s~dg~~l~~~~~~d~~i  425 (433)
T 3bws_A          396 FWE----AGNQPTGLDVSPDNRYLVISDFLDHQI  425 (433)
T ss_dssp             EEE----CSSSEEEEEECTTSCEEEEEETTTTEE
T ss_pred             Eec----CCCCCceEEEcCCCCEEEEEECCCCeE
Confidence            887    3567899999999999988764 7754

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-33  Score=243.29  Aligned_cols=212  Identities=12%  Similarity=0.145  Sum_probs=181.6

Q ss_pred             ccccceeeccCCCcEEEEEEcCC--CCEEEEeecCCeEEEEEccCCe--eeeeeeeeeeceEEEEEecc--CCeEEEecc
Q 023822           23 SMEVGMSFRDYNGRISSMDFHKS--SSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSH--PTTVIYSSK   96 (276)
Q Consensus        23 ~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~   96 (276)
                      ..+....+.+|.++|++++|+|+  +++|++|+.||.|++||+.+++  ....+..|...|.+++|+|+  +..+++++.
T Consensus        42 ~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~  121 (753)
T 3jro_A           42 THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS  121 (753)
T ss_dssp             EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred             CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeC
Confidence            45667788999999999999987  9999999999999999999887  67778889999999999999  999999998


Q ss_pred             CCCCCceEEEEccCCc--eeeeecccCcceEEEEecc-------------CCCEEEEeeCCCeEEEEeccCce----eee
Q 023822           97 NGWDESLRLLSLHDNK--YLRYFKGHHDRVVSLSLCS-------------SKDCFISGSLDRTVLLWDQRAEK----CQG  157 (276)
Q Consensus        97 ~~~d~~i~~~d~~~~~--~~~~~~~~~~~i~~~~~~~-------------~~~~l~~~~~d~~i~iwd~~~~~----~~~  157 (276)
                         ||.|++||++++.  ....+.+|...|.+++|+|             +++++++++.||.|++||++++.    ...
T Consensus       122 ---dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~  198 (753)
T 3jro_A          122 ---DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES  198 (753)
T ss_dssp             ---TSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEE
T ss_pred             ---CCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeee
Confidence               9999999998873  3456678999999999999             58899999999999999998763    333


Q ss_pred             eE--eecCCCeeEecCC---CcEEEEee-CCeEEEEecccCCCCC-eeeeeecCCCCCceEEEECCCCcEEEEeecCCcE
Q 023822          158 LL--RVQGRPAAAYDDQ---GLVFAVAF-GGYIRMFDARKYEKGP-FDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHI  230 (276)
Q Consensus       158 ~~--~~~~~~~~~~~~~---~~~l~~~~-d~~i~~~d~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  230 (276)
                      .+  +...+.+++|+|+   +.++++++ |+.|++||++...... ........|...+.+++|+|+|+++++++.||.|
T Consensus       199 ~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I  278 (753)
T 3jro_A          199 TLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKV  278 (753)
T ss_dssp             EECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCE
T ss_pred             eecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEE
Confidence            44  4566889999999   88888877 9999999998864221 1233445678899999999999999999999999


Q ss_pred             EEEECCC
Q 023822          231 HVLDSFR  237 (276)
Q Consensus       231 ~i~d~~~  237 (276)
                      ++|++.+
T Consensus       279 ~vwd~~~  285 (753)
T 3jro_A          279 TLWKENL  285 (753)
T ss_dssp             ECCBCCS
T ss_pred             EEEecCC
Confidence            9999874

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=4.2e-32  Score=209.17  Aligned_cols=248  Identities=11%  Similarity=0.168  Sum_probs=178.3

Q ss_pred             hccccceeeccCCCc----EEEEEEcCCCC---EEEEeecCCeEEEEEccCC---eeeeeeeeeee--------------
Q 023822           22 QSMEVGMSFRDYNGR----ISSMDFHKSSS---YLVTASDDESIRLYDVTAA---TCLKTINSKKY--------------   77 (276)
Q Consensus        22 ~~~~~~~~~~~h~~~----v~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~--------------   77 (276)
                      ..++.+.+++...+.    +.++-|-..+-   .++++++ ..|++|+..++   +++.++..|+.              
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  101 (356)
T 2w18_A           23 GNLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNL  101 (356)
T ss_dssp             -CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSC
T ss_pred             ceeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccce
Confidence            456677777765543    44565654333   5677766 58999999988   77777766554              


Q ss_pred             -----------ceEEEEEecc----CCeEEEecc-----------------CCCCCceEEEEc-cCCceeeeecccCcce
Q 023822           78 -----------GVDLVCFTSH----PTTVIYSSK-----------------NGWDESLRLLSL-HDNKYLRYFKGHHDRV  124 (276)
Q Consensus        78 -----------~v~~~~~~~~----~~~l~~~~~-----------------~~~d~~i~~~d~-~~~~~~~~~~~~~~~i  124 (276)
                                 .|..++++|+    ++.++.++.                 .+.|+.|++|++ .+++.+..+..|...+
T Consensus       102 ~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v  181 (356)
T 2w18_A          102 VCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEE  181 (356)
T ss_dssp             EEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSS
T ss_pred             eeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCce
Confidence                       4566777778    666766542                 234889999998 5577888888899999


Q ss_pred             EEEEecc---CCCEEEEeeCCCeEEEEeccCceeeeeEeec-----CCCeeEecCCCcEEE------------Eee-CCe
Q 023822          125 VSLSLCS---SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ-----GRPAAAYDDQGLVFA------------VAF-GGY  183 (276)
Q Consensus       125 ~~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~------------~~~-d~~  183 (276)
                      ..++|+|   ++.+|++++.|++|++||++++++++.+..+     .+.+++|+|++.+++            +++ |++
T Consensus       182 ~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~t  261 (356)
T 2w18_A          182 TILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQ  261 (356)
T ss_dssp             CEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEE
T ss_pred             eeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcE
Confidence            9999998   6789999999999999999999999988532     244668999998763            344 899


Q ss_pred             EEEEecccCCCCCeeeee-ecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceE-EEEECC
Q 023822          184 IRMFDARKYEKGPFDIFS-VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTL-EASFSP  261 (276)
Q Consensus       184 i~~~d~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~-~~~~s~  261 (276)
                      |++||..+++........ ..+|...+.+..+  ++.++++++.|++|+|||+.+++++.++.   +|...+. .++|+|
T Consensus       262 IklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~---gH~~~vvs~vafSP  336 (356)
T 2w18_A          262 LIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLP---PVSDQHWSFVKWSG  336 (356)
T ss_dssp             EEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEEC---CC--CCCCEEEECS
T ss_pred             EEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEec---CCCCCeEEEEEECC
Confidence            999999876531111111 1244444433333  47889999999999999999999999998   6766555 589999


Q ss_pred             CCcEEEEecCCCCC
Q 023822          262 EGMFVISGRVSPFS  275 (276)
Q Consensus       262 ~g~~l~~~~~dg~v  275 (276)
                      ||++|++|+.|++|
T Consensus       337 DG~~LaSGS~D~TI  350 (356)
T 2w18_A          337 TDSHLLAGQKDGNI  350 (356)
T ss_dssp             SSSEEEEECTTSCE
T ss_pred             CCCEEEEEECCCcE
Confidence            99999999999986

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-33  Score=221.65  Aligned_cols=228  Identities=10%  Similarity=0.002  Sum_probs=172.9

Q ss_pred             CCcEEEEEEcCCCCEEEEeecCCeEEEEEcc---------CCeeeeeee-eeeeceEEEEEec--cCCeEEEeccCCCCC
Q 023822           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVT---------AATCLKTIN-SKKYGVDLVCFTS--HPTTVIYSSKNGWDE  101 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~---------~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~~~~d~  101 (276)
                      ...|.++.|+|+   +++++.|++|++|+..         +++.+..+. .|..+|.+++|+|  +++++++++.   |+
T Consensus        76 ~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~---dg  149 (343)
T 3lrv_A           76 TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADN---RG  149 (343)
T ss_dssp             EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEET---TC
T ss_pred             cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeC---CC
Confidence            356778888887   9999999999999765         344344433 4557899999999  9999999998   99


Q ss_pred             ceEEEEccCCceeeeec-ccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceee-eeE---eecCCCeeEecCCCcEE
Q 023822          102 SLRLLSLHDNKYLRYFK-GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ-GLL---RVQGRPAAAYDDQGLVF  176 (276)
Q Consensus       102 ~i~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~---~~~~~~~~~~~~~~~~l  176 (276)
                      .|++||+++++...... .|...+.+++|+|++++|++|+.||.|++||+++++.. ..+   |...+.+++|+|++.+|
T Consensus       150 ~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l  229 (343)
T 3lrv_A          150 TIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWM  229 (343)
T ss_dssp             CEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEE
T ss_pred             cEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEE
Confidence            99999999998876663 45568999999999999999999999999999998876 444   34667899999999999


Q ss_pred             EEeeCCeEEEEecccCCCCCeeeeeecCCCCCce--EEEECCCCcEEEEeec-CCcEEEEECCCCcEEEEeecCCCCCCc
Q 023822          177 AVAFGGYIRMFDARKYEKGPFDIFSVGGDISDAN--VVKFSNDGRLMLLTTM-EGHIHVLDSFRGTLLSTYNVKPVSRNS  253 (276)
Q Consensus       177 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~  253 (276)
                      ++++++.|++||+++.+... .+..+..+...+.  +++|+|+|++|++++. |+.|++|++.+.......       .+
T Consensus       230 ~s~~~~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-------~~  301 (343)
T 3lrv_A          230 VVECDQTVVCFDLRKDVGTL-AYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK-------DE  301 (343)
T ss_dssp             EEEESSBEEEEETTSSTTCB-SSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-------EE
T ss_pred             EEEeCCeEEEEEcCCCCcce-eecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe-------cC
Confidence            99998899999999865411 1111112333444  6999999999999988 999999998765433221       34


Q ss_pred             eEEEEECC---CCcEEEEecCCCCC
Q 023822          254 TLEASFSP---EGMFVISGRVSPFS  275 (276)
Q Consensus       254 v~~~~~s~---~g~~l~~~~~dg~v  275 (276)
                      +..++|.+   +++.|++++.||.+
T Consensus       302 ~~~~~~~~~~~~~~~l~~~~~d~~~  326 (343)
T 3lrv_A          302 ESALCLQSDTADFTDMDVVCGDGGI  326 (343)
T ss_dssp             EEECCC----CCCCEEEEEEETTEE
T ss_pred             ceeEecCccccccceeEEEecCCce
Confidence            56667776   66777777776643

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=6e-32  Score=218.95  Aligned_cols=211  Identities=14%  Similarity=0.198  Sum_probs=173.6

Q ss_pred             ccCCCcEEEEEEcC-CCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccC---CeEEEeccCCCCCceEEE
Q 023822           31 RDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP---TTVIYSSKNGWDESLRLL  106 (276)
Q Consensus        31 ~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~~~~d~~i~~~  106 (276)
                      .+|...|.+++|+| ++++|++++.||.|++||+.+++....+. +...+.++.+++.+   ..+++++.   ++.|++|
T Consensus        96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~  171 (408)
T 4a11_B           96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTR---GPKVQLC  171 (408)
T ss_dssp             TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEES---SSSEEEE
T ss_pred             ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcC---CCeEEEE
Confidence            36999999999999 78899999999999999999998887776 56689999999854   48999888   9999999


Q ss_pred             EccCCceeeeecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCce-eeeeE-----------------eecCCCee
Q 023822          107 SLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEK-CQGLL-----------------RVQGRPAA  167 (276)
Q Consensus       107 d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~-~~~~~-----------------~~~~~~~~  167 (276)
                      |+++++.+..+..|...|.+++|+|+++ +|++++.||.|++||++... ....+                 +...+.++
T Consensus       172 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  251 (408)
T 4a11_B          172 DLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGL  251 (408)
T ss_dssp             ESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEE
T ss_pred             eCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEE
Confidence            9999999999999999999999999998 58999999999999998764 22211                 34456789


Q ss_pred             EecCCCcEEEEee-CCeEEEEecccCCCCC-------------------------------------------eeeeeec
Q 023822          168 AYDDQGLVFAVAF-GGYIRMFDARKYEKGP-------------------------------------------FDIFSVG  203 (276)
Q Consensus       168 ~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~-------------------------------------------~~~~~~~  203 (276)
                      +|+|++.+++++. |+.|++||+++++...                                           .....+.
T Consensus       252 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~  331 (408)
T 4a11_B          252 CFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK  331 (408)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEEC
T ss_pred             EEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeec
Confidence            9999998888777 8999999998754211                                           1233456


Q ss_pred             CCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEee
Q 023822          204 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  245 (276)
Q Consensus       204 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  245 (276)
                      .|...|.+++|+|++++|++++.||.|++||+.+++.+....
T Consensus       332 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  373 (408)
T 4a11_B          332 GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDD  373 (408)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--------
T ss_pred             cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCC
Confidence            788899999999999999999999999999999998876554

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=6e-32  Score=220.96  Aligned_cols=212  Identities=18%  Similarity=0.263  Sum_probs=178.5

Q ss_pred             cccceeeccCCCcEEEEEEcCCCC-EEEEeecCCeEEEEEccCCee-------eeeeeeeeeceEEEEEec-cCCeEEEe
Q 023822           24 MEVGMSFRDYNGRISSMDFHKSSS-YLVTASDDESIRLYDVTAATC-------LKTINSKKYGVDLVCFTS-HPTTVIYS   94 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~~~   94 (276)
                      .+....+.+|...|++++|+|++. +|++|+.||.|++|++.++..       ...+..|...|.+++|+| ++..++++
T Consensus       171 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~  250 (430)
T 2xyi_A          171 CQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV  250 (430)
T ss_dssp             CCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEE
T ss_pred             CCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEE
Confidence            566778899999999999999988 999999999999999987322       455668888999999999 66778888


Q ss_pred             ccCCCCCceEEEEccCC---ceeeeecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccC-ceeeeeE--eecCCCee
Q 023822           95 SKNGWDESLRLLSLHDN---KYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRA-EKCQGLL--RVQGRPAA  167 (276)
Q Consensus        95 ~~~~~d~~i~~~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~-~~~~~~~--~~~~~~~~  167 (276)
                      +.   |+.|++||++++   +....+..|...|.+++|+|+++ +|++++.||.|++||++. ...+..+  +...+.++
T Consensus       251 ~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i  327 (430)
T 2xyi_A          251 AD---DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV  327 (430)
T ss_dssp             ET---TSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEE
T ss_pred             eC---CCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEE
Confidence            87   999999999987   56777888999999999999987 689999999999999998 4455555  55668899


Q ss_pred             EecCCCc-EEEEee-CCeEEEEecccCCCC----------CeeeeeecCCCCCceEEEECCCCc-EEEEeecCCcEEEEE
Q 023822          168 AYDDQGL-VFAVAF-GGYIRMFDARKYEKG----------PFDIFSVGGDISDANVVKFSNDGR-LMLLTTMEGHIHVLD  234 (276)
Q Consensus       168 ~~~~~~~-~l~~~~-d~~i~~~d~~~~~~~----------~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d  234 (276)
                      +|+|++. ++++++ |+.|++||++.....          +.......+|...|.+++|+|+++ +|++++.||.|++|+
T Consensus       328 ~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~  407 (430)
T 2xyi_A          328 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ  407 (430)
T ss_dssp             EECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred             EECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence            9999984 565555 999999999874321          234566678888999999999998 899999999999999


Q ss_pred             CCCC
Q 023822          235 SFRG  238 (276)
Q Consensus       235 ~~~~  238 (276)
                      +...
T Consensus       408 ~~~~  411 (430)
T 2xyi_A          408 MAEN  411 (430)
T ss_dssp             ECHH
T ss_pred             cccc
Confidence            8653

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-31  Score=208.41  Aligned_cols=207  Identities=14%  Similarity=0.189  Sum_probs=178.0

Q ss_pred             cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEec-cCCeEEEeccCCCCCc
Q 023822           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTS-HPTTVIYSSKNGWDES  102 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~d~~  102 (276)
                      .+....+.+|...|.+++|  ++++|++++.|+.|++||  .++....+..|...+.++.|.| +++.+++++.   |+.
T Consensus        94 ~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~~  166 (313)
T 3odt_A           94 EDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASA---DKT  166 (313)
T ss_dssp             SCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEET---TSC
T ss_pred             CCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEEC---CCC
Confidence            3556778899999999999  567999999999999999  6788888899999999999998 8999999998   999


Q ss_pred             eEEEEccCCceeeeecc-cCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEe
Q 023822          103 LRLLSLHDNKYLRYFKG-HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVA  179 (276)
Q Consensus       103 i~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~  179 (276)
                      |++||  ..+....+.. |...+.+++|+|++. +++++.|+.|++||+++++.+..+  +...+.+++|+|++++++++
T Consensus       167 i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~  243 (313)
T 3odt_A          167 IKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCG  243 (313)
T ss_dssp             EEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEEEE
T ss_pred             EEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCEEEEe
Confidence            99999  4556666766 899999999999998 999999999999999999888877  45567899999999877777


Q ss_pred             eCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEee
Q 023822          180 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  245 (276)
Q Consensus       180 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  245 (276)
                      .|+.|++||+++++.    ...+..|..++.+++|+|+++ +++++.||.|++||+.+++......
T Consensus       244 ~dg~v~iwd~~~~~~----~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~  304 (313)
T 3odt_A          244 EDRTVRIWSKENGSL----KQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDE  304 (313)
T ss_dssp             TTSEEEEECTTTCCE----EEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC---
T ss_pred             cCCEEEEEECCCCce----eEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehhh
Confidence            799999999988654    555667888999999999998 6678999999999999887766554

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=4.4e-32  Score=209.07  Aligned_cols=193  Identities=12%  Similarity=0.095  Sum_probs=147.2

Q ss_pred             cEEEEEEcCC----CCEEEEeec--------------------CCeEEEEEc-cCCeeeeeeeeeeeceEEEEEec---c
Q 023822           36 RISSMDFHKS----SSYLVTASD--------------------DESIRLYDV-TAATCLKTINSKKYGVDLVCFTS---H   87 (276)
Q Consensus        36 ~v~~~~~~~~----~~~l~~~~~--------------------d~~i~iwd~-~~~~~~~~~~~~~~~v~~~~~~~---~   87 (276)
                      .|.+++++|+    ++.+++++.                    |+.|++|++ .+++.+..+..|...+..++|++   +
T Consensus       113 ~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~  192 (356)
T 2w18_A          113 EIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGM  192 (356)
T ss_dssp             EEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETS
T ss_pred             ceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCC
Confidence            5566667777    777776553                    888999998 45888888888888899999999   6


Q ss_pred             CCeEEEeccCCCCCceEEEEccCCceeeeecccC---cceEEEEeccCCCEE------------EEeeCCCeEEEEeccC
Q 023822           88 PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHH---DRVVSLSLCSSKDCF------------ISGSLDRTVLLWDQRA  152 (276)
Q Consensus        88 ~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l------------~~~~~d~~i~iwd~~~  152 (276)
                      +..|++++.   |++|++||+.+++.+.++.+|.   ..+.+++|+|++.++            ++|+.|++|++||..+
T Consensus       193 ~~~LaSgS~---D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t  269 (356)
T 2w18_A          193 QEALLGTTI---MNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT  269 (356)
T ss_dssp             TTEEEEEET---TSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTT
T ss_pred             CceEEEecC---CCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC
Confidence            789999998   9999999999999999998654   357778999999876            5678899999999999


Q ss_pred             ceeeeeEe-----ecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCce-EEEECCCCcEEEEee
Q 023822          153 EKCQGLLR-----VQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDAN-VVKFSNDGRLMLLTT  225 (276)
Q Consensus       153 ~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~  225 (276)
                      ++.+..+.     .+....+..+.++.++++++ |++|++||+++++.    ...+.+|...+. .++|+|+|++|++|+
T Consensus       270 gk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~----l~tL~gH~~~vvs~vafSPDG~~LaSGS  345 (356)
T 2w18_A          270 TLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQC----TALLPPVSDQHWSFVKWSGTDSHLLAGQ  345 (356)
T ss_dssp             TEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSE----EEEECCC--CCCCEEEECSSSSEEEEEC
T ss_pred             CEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcE----EEEecCCCCCeEEEEEECCCCCEEEEEE
Confidence            98876542     11112333333355677776 99999999998775    666777766555 689999999999999


Q ss_pred             cCCcEEEEEC
Q 023822          226 MEGHIHVLDS  235 (276)
Q Consensus       226 ~dg~i~i~d~  235 (276)
                      .|++|+|||+
T Consensus       346 ~D~TIklWd~  355 (356)
T 2w18_A          346 KDGNIFVYHY  355 (356)
T ss_dssp             TTSCEEEEEE
T ss_pred             CCCcEEEecC
Confidence            9999999995

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=7.8e-31  Score=205.69  Aligned_cols=228  Identities=18%  Similarity=0.198  Sum_probs=189.2

Q ss_pred             EEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeee--eeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCcee
Q 023822           37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN--SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL  114 (276)
Q Consensus        37 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~  114 (276)
                      .++|+||+++ +||+| .|++|+|||+++++++..+.  .|...|.+++|+|+++++++++.   |+.|++||+++++.+
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~---Dg~v~iw~~~~~~~~  102 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTS---SAEVQLWDVQQQKRL  102 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEET---TSEEEEEETTTTEEE
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEEC---CCcEEEeecCCceeE
Confidence            5789999875 77765 58999999999999887765  56678999999999999999998   999999999999999


Q ss_pred             eeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceee-eeE--eecCCCeeEecCCCcEEEEee-CCeEEEEecc
Q 023822          115 RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ-GLL--RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDAR  190 (276)
Q Consensus       115 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~--~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~  190 (276)
                      ..+.+|...+.++.+  ++..+++++.++.+++|+....... ..+  +...+..+.+.+++.+++++. |+.|++||++
T Consensus       103 ~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~  180 (318)
T 4ggc_A          103 RNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA  180 (318)
T ss_dssp             EEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred             EEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECC
Confidence            999999998877655  5679999999999999998876443 333  455567889999998888877 8999999999


Q ss_pred             cCCCCCeeeeeecCCCCCceEEEECCCCcE---EEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEE
Q 023822          191 KYEKGPFDIFSVGGDISDANVVKFSNDGRL---MLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVI  267 (276)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  267 (276)
                      +++...........+...+..++++|++..   +++++.++.|++||...........    +...+..+.|+|+++.++
T Consensus       181 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~  256 (318)
T 4ggc_A          181 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD----AHSQVCSILWSPHYKELI  256 (318)
T ss_dssp             CBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE----CSSCEEEEEEETTTTEEE
T ss_pred             CCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc----ceeeeeeeeecccccceE
Confidence            877554455666677889999999997643   3456788999999999988877766    678899999999998877


Q ss_pred             Eec--CCCCC
Q 023822          268 SGR--VSPFS  275 (276)
Q Consensus       268 ~~~--~dg~v  275 (276)
                      +++  .||.|
T Consensus       257 ~~sg~~d~~i  266 (318)
T 4ggc_A          257 SGHGFAQNQL  266 (318)
T ss_dssp             EEECTTTCCE
T ss_pred             EEEEcCCCEE
Confidence            654  67764

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=3e-31  Score=216.88  Aligned_cols=235  Identities=12%  Similarity=0.128  Sum_probs=192.3

Q ss_pred             ccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeee-----eeeeeeeceEEEEEeccCCeEEEeccCCC
Q 023822           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLK-----TINSKKYGVDLVCFTSHPTTVIYSSKNGW   99 (276)
Q Consensus        25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~~~~   99 (276)
                      +....+..+ ..+.+++|+|++.++++++.++.|++||+.+++...     .+..|...+.+++|++++..+++++.   
T Consensus       114 ~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~---  189 (433)
T 3bws_A          114 RFISRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQ---  189 (433)
T ss_dssp             EEEEEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGG---
T ss_pred             eEEEEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECC---
Confidence            344445544 446699999977788888889999999999998876     34467778999999999999999988   


Q ss_pred             CCceEEEEccCCceeeeecccCcceEEEEeccCCCEEE-EeeCCCeEEEEeccCceeeeeEe-ecCCCeeEecCCCcEEE
Q 023822          100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFI-SGSLDRTVLLWDQRAEKCQGLLR-VQGRPAAAYDDQGLVFA  177 (276)
Q Consensus       100 d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~l~  177 (276)
                      ++.|++||+++++.+..+..|...+.+++|+|+++.++ +++.|+.|++||+++++....+. ...+..++++|+++.++
T Consensus       190 d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~  269 (433)
T 3bws_A          190 ANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELY  269 (433)
T ss_dssp             GTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEE
T ss_pred             CCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEE
Confidence            99999999999999999988999999999999999775 55579999999999988877663 33467899999997776


Q ss_pred             Eee---------CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEE-EEeecCCcEEEEECCCCcEEEEeecC
Q 023822          178 VAF---------GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLM-LLTTMEGHIHVLDSFRGTLLSTYNVK  247 (276)
Q Consensus       178 ~~~---------d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~  247 (276)
                      ++.         |+.|++||+++++.     .....+...+.+++|+|+++.+ ++++.|+.|++||+.+++.+..+.  
T Consensus       270 ~~~~~~~~~~~~dg~i~~~d~~~~~~-----~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~--  342 (433)
T 3bws_A          270 IAQFSASNQESGGGRLGIYSMDKEKL-----IDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP--  342 (433)
T ss_dssp             EEEEESCTTCSCCEEEEEEETTTTEE-----EEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE--
T ss_pred             EEECCCCccccCCCeEEEEECCCCcE-----EeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec--
Confidence            665         67999999987542     2222344578899999999755 566889999999999999888876  


Q ss_pred             CCCCCceEEEEECCCCcEEEEecCC
Q 023822          248 PVSRNSTLEASFSPEGMFVISGRVS  272 (276)
Q Consensus       248 ~~~~~~v~~~~~s~~g~~l~~~~~d  272 (276)
                        +...+.+++|+|+|++|++++.+
T Consensus       343 --~~~~~~~~~~s~dg~~l~~~~~~  365 (433)
T 3bws_A          343 --VFDKPNTIALSPDGKYLYVSCRG  365 (433)
T ss_dssp             --CSSSEEEEEECTTSSEEEEEECC
T ss_pred             --CCCCCCeEEEcCCCCEEEEEecC
Confidence              56789999999999988887763

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=6.2e-32  Score=218.29  Aligned_cols=203  Identities=10%  Similarity=0.043  Sum_probs=153.5

Q ss_pred             ccceeeccCCCcEEEEEEcC--------CCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCC-eEEEec
Q 023822           25 EVGMSFRDYNGRISSMDFHK--------SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT-TVIYSS   95 (276)
Q Consensus        25 ~~~~~~~~h~~~v~~~~~~~--------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~   95 (276)
                      .....+.+|.+.|++++|+|        |+++||+++.|++|+|||+.++.++..+..|..++.+++|+|++. +|++++
T Consensus       127 ~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~  206 (393)
T 4gq1_A          127 HVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGE  206 (393)
T ss_dssp             EEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEE
T ss_pred             eeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecC
Confidence            34456789999999999998        789999999999999999999988888888999999999999875 688888


Q ss_pred             cCCCCCceEEEEccCCceeee-------------------------ecccCcceEEEEec-cCCCEEEEeeCCCeEEEEe
Q 023822           96 KNGWDESLRLLSLHDNKYLRY-------------------------FKGHHDRVVSLSLC-SSKDCFISGSLDRTVLLWD  149 (276)
Q Consensus        96 ~~~~d~~i~~~d~~~~~~~~~-------------------------~~~~~~~i~~~~~~-~~~~~l~~~~~d~~i~iwd  149 (276)
                      .   |+.|++||+++++....                         ..+|...+.++.|. |+++.+++++.|+++++||
T Consensus       207 ~---d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd  283 (393)
T 4gq1_A          207 R---NGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWN  283 (393)
T ss_dssp             T---TSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEE
T ss_pred             C---CCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEE
Confidence            7   99999999987754322                         23577788899987 7999999999999999999


Q ss_pred             ccCceeeeeEee--c------------------CCCeeEecC--CCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCC
Q 023822          150 QRAEKCQGLLRV--Q------------------GRPAAAYDD--QGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDI  206 (276)
Q Consensus       150 ~~~~~~~~~~~~--~------------------~~~~~~~~~--~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~  206 (276)
                      +...+....+..  .                  ......++|  ++.++++++ |+.|++||+.+++.    ......|.
T Consensus       284 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~----~~~~~~~~  359 (393)
T 4gq1_A          284 LFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDS----NSIPIQLG  359 (393)
T ss_dssp             C-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTC----CEEEEECS
T ss_pred             CccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcE----EEEecCCC
Confidence            987665444311  1                  111233333  345666666 89999999988665    34445677


Q ss_pred             CCceEEEECCCCcEEEEeecCCcEEEEEC
Q 023822          207 SDANVVKFSNDGRLMLLTTMEGHIHVLDS  235 (276)
Q Consensus       207 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  235 (276)
                      .+|.+++|+|+|++||+++.+| +.+|.+
T Consensus       360 ~~V~svafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          360 MPIVDFCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             SCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred             CcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence            8999999999999999998776 556654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=2.4e-30  Score=206.27  Aligned_cols=225  Identities=12%  Similarity=0.130  Sum_probs=173.2

Q ss_pred             CcEEEEEEcCCCCEE-EEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCC-c
Q 023822           35 GRISSMDFHKSSSYL-VTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN-K  112 (276)
Q Consensus        35 ~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~-~  112 (276)
                      ..+..+++.++++.+ ++++.|++|++||..+++++..+. +..+|.++.++++  .++++.    ++.|++||+.++ +
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~--~~~~~~----~~~i~i~d~~~~~~  131 (355)
T 3vu4_A           59 RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSRE--FIVVSY----GDVISVFKFGNPWK  131 (355)
T ss_dssp             SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSS--EEEEEE----TTEEEEEESSTTCC
T ss_pred             CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCC--EEEEEE----cCEEEEEECCCCce
Confidence            357888999988877 567788999999999999988887 5568999999765  455554    889999999988 6


Q ss_pred             eeeeecccCcceEEEEeccCCCEEEE--eeCCCeEEEEeccCce----------------eeeeE--eecCCCeeEecCC
Q 023822          113 YLRYFKGHHDRVVSLSLCSSKDCFIS--GSLDRTVLLWDQRAEK----------------CQGLL--RVQGRPAAAYDDQ  172 (276)
Q Consensus       113 ~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~d~~i~iwd~~~~~----------------~~~~~--~~~~~~~~~~~~~  172 (276)
                      .+..+..   +...+++++  .+++.  ++.||.|++||+++++                ....+  |...+.+++|+|+
T Consensus       132 ~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~  206 (355)
T 3vu4_A          132 RITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRK  206 (355)
T ss_dssp             BSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTT
T ss_pred             eeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCC
Confidence            6666654   444566666  55665  6889999999999765                13444  5667889999999


Q ss_pred             CcEEEEee-CCe-EEEEecccCCCCCeeeeeec-C-CCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEE--E---
Q 023822          173 GLVFAVAF-GGY-IRMFDARKYEKGPFDIFSVG-G-DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS--T---  243 (276)
Q Consensus       173 ~~~l~~~~-d~~-i~~~d~~~~~~~~~~~~~~~-~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~---  243 (276)
                      +.+|++++ |++ |++||+++++.    ...+. + |...|.+++|+|+|++|++++.|+.|++||+.++....  .   
T Consensus       207 g~~l~s~s~d~~~v~iwd~~~~~~----~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~  282 (355)
T 3vu4_A          207 SDMVATCSQDGTIIRVFKTEDGVL----VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKG  282 (355)
T ss_dssp             SSEEEEEETTCSEEEEEETTTCCE----EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTT
T ss_pred             CCEEEEEeCCCCEEEEEECCCCcE----EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccc
Confidence            99998888 898 99999998654    44454 4 88999999999999999999999999999997653211  1   


Q ss_pred             ---------------eecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          244 ---------------YNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       244 ---------------~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                                     +............++|++||++|++++.||.+
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~  329 (355)
T 3vu4_A          283 WINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMI  329 (355)
T ss_dssp             TEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEE
T ss_pred             eeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeE
Confidence                           11111122334679999999999999999854

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=1.4e-30  Score=208.04  Aligned_cols=203  Identities=13%  Similarity=0.168  Sum_probs=165.0

Q ss_pred             cceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEE--eccCCeEEEeccCCCCCce
Q 023822           26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCF--TSHPTTVIYSSKNGWDESL  103 (276)
Q Consensus        26 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~~~~d~~i  103 (276)
                      ....+.+|.++|++++|+|++++|++++.||.|++||+.+++.+. +..|...|.+++|  ++++..+++++.   |+.|
T Consensus        78 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~---dg~i  153 (368)
T 3mmy_A           78 IPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSW---DKTL  153 (368)
T ss_dssp             EEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEET---TSEE
T ss_pred             eEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccC---CCcE
Confidence            336788999999999999999999999999999999999988766 5678899999999  889999999998   9999


Q ss_pred             EEEEccCCceeeeecccC-----------------------------------------cceEEEEeccCCCE----EEE
Q 023822          104 RLLSLHDNKYLRYFKGHH-----------------------------------------DRVVSLSLCSSKDC----FIS  138 (276)
Q Consensus       104 ~~~d~~~~~~~~~~~~~~-----------------------------------------~~i~~~~~~~~~~~----l~~  138 (276)
                      ++||+++++.+..+..+.                                         ..+.++.+.++...    +++
T Consensus       154 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (368)
T 3mmy_A          154 KFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFAL  233 (368)
T ss_dssp             EEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEE
T ss_pred             EEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEE
Confidence            999999887766655332                                         22344455444433    999


Q ss_pred             eeCCCeEEEEeccCc---eeeeeE--eec------------CCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeee
Q 023822          139 GSLDRTVLLWDQRAE---KCQGLL--RVQ------------GRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIF  200 (276)
Q Consensus       139 ~~~d~~i~iwd~~~~---~~~~~~--~~~------------~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~  200 (276)
                      ++.|+.|++||++..   .....+  +..            .+.+++|+|++++|++++ |+.|++||+++++.    ..
T Consensus       234 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~----~~  309 (368)
T 3mmy_A          234 GSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTK----LK  309 (368)
T ss_dssp             EETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE----EE
T ss_pred             ecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcE----EE
Confidence            999999999999876   333333  222            578999999998888777 99999999997654    56


Q ss_pred             eecCCCCCceEEEECCCCcEEEEeecCCcEEEEECC
Q 023822          201 SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF  236 (276)
Q Consensus       201 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  236 (276)
                      .+..|..+|.+++|+|+|++|++++.|+..+.|++.
T Consensus       310 ~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~  345 (368)
T 3mmy_A          310 TSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFY  345 (368)
T ss_dssp             ECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred             EecCCCCCceEEEECCCCCeEEEEeccccccccccc
Confidence            677888999999999999999999998865555543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=8.3e-29  Score=199.79  Aligned_cols=211  Identities=13%  Similarity=0.151  Sum_probs=174.3

Q ss_pred             CEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEE-EeccCCCCCceEEEEccCCceeeeecccCcceE
Q 023822           47 SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVI-YSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV  125 (276)
Q Consensus        47 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~  125 (276)
                      .++++++.|+.|++||+.+++.+..+..+. .+.+++|+|++++++ +++.   ++.|++||+.+++.+..+..+. .+.
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~---d~~i~v~d~~~~~~~~~~~~~~-~v~   77 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAH---SNDVSIIDTATNNVIATVPAGS-SPQ   77 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGG---GTEEEEEETTTTEEEEEEECSS-SEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCC---CCeEEEEECCCCeEEEEEECCC-Ccc
Confidence            467888999999999999999988888765 589999999999874 5545   9999999999999888887555 899


Q ss_pred             EEEeccCCCEEEE-eeCCCeEEEEeccCceeeeeEe-ecCCCeeEecCCCcEE-EEee-CCeEEEEecccCCCCCeeeee
Q 023822          126 SLSLCSSKDCFIS-GSLDRTVLLWDQRAEKCQGLLR-VQGRPAAAYDDQGLVF-AVAF-GGYIRMFDARKYEKGPFDIFS  201 (276)
Q Consensus       126 ~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~l-~~~~-d~~i~~~d~~~~~~~~~~~~~  201 (276)
                      +++|+|++++++. ++.++.|++||+.+++....+. ...+..++|+|+++.+ +++. ++.|++||+++++.    ...
T Consensus        78 ~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~----~~~  153 (391)
T 1l0q_A           78 GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV----INT  153 (391)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE----EEE
T ss_pred             ceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcE----EEE
Confidence            9999999997754 5567999999999998887773 3446789999999866 4555 89999999987543    333


Q ss_pred             ecCCCCCceEEEECCCCcEE-EEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecC
Q 023822          202 VGGDISDANVVKFSNDGRLM-LLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRV  271 (276)
Q Consensus       202 ~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  271 (276)
                      +..+ ..+..++|+|++++| ++++.++.|++||+.+++.+..+.    +...+.+++|+|+|++|++++.
T Consensus       154 ~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~~~~  219 (391)
T 1l0q_A          154 VSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK----VEAAPSGIAVNPEGTKAYVTNV  219 (391)
T ss_dssp             EECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE----CSSEEEEEEECTTSSEEEEEEE
T ss_pred             EecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe----cCCCccceEECCCCCEEEEEec
Confidence            3333 457899999999887 567788999999999999888876    5678999999999999988873

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.97  E-value=1.4e-28  Score=199.93  Aligned_cols=227  Identities=9%  Similarity=0.064  Sum_probs=179.7

Q ss_pred             cceeeccCCCcEEEEEEcCCCCEEEEeecCC---eEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCc
Q 023822           26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDE---SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES  102 (276)
Q Consensus        26 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~  102 (276)
                      ..+.+.+|...|.+++|+|+|++|++++.++   .|++||+.+++.. .+..+...+.+++|+|+++.|+.......+..
T Consensus       170 ~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~  248 (415)
T 2hqs_A          170 NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLN  248 (415)
T ss_dssp             SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred             CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCce
Confidence            4566778999999999999999999999875   9999999988765 46667778999999999998885433211445


Q ss_pred             eEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeC-CC--eEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEE
Q 023822          103 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DR--TVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAV  178 (276)
Q Consensus       103 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~  178 (276)
                      |++||+.+++. ..+..|...+.+++|+|++++|++++. ++  .|++||+.+++..... +...+..++|+|++++|+.
T Consensus       249 i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~  327 (415)
T 2hqs_A          249 LYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVM  327 (415)
T ss_dssp             EEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEE
T ss_pred             EEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEE
Confidence            99999988775 566778889999999999998888876 44  6888898887643322 3344567899999998877


Q ss_pred             ee-C---CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCC---cEEEEECCCCcEEEEeecCCCCC
Q 023822          179 AF-G---GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG---HIHVLDSFRGTLLSTYNVKPVSR  251 (276)
Q Consensus       179 ~~-d---~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~  251 (276)
                      +. +   ..|++||+.+++.     ..+..+. .+.+++|+|+|++|++++.++   .|++||+. ++....+.   .+.
T Consensus       328 ~~~~~g~~~i~~~d~~~~~~-----~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~---~~~  397 (415)
T 2hqs_A          328 VSSNGGQQHIAKQDLATGGV-----QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLP---ATD  397 (415)
T ss_dssp             EEECSSCEEEEEEETTTCCE-----EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECC---CSS
T ss_pred             EECcCCceEEEEEECCCCCE-----EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEee---CCC
Confidence            76 3   5899999987542     2333343 789999999999999988776   79999986 55566666   688


Q ss_pred             CceEEEEECCCCc
Q 023822          252 NSTLEASFSPEGM  264 (276)
Q Consensus       252 ~~v~~~~~s~~g~  264 (276)
                      +.|.+++|+|...
T Consensus       398 ~~v~~~~~~~~~~  410 (415)
T 2hqs_A          398 GQVKFPAWSPYLH  410 (415)
T ss_dssp             SEEEEEEECCCCC
T ss_pred             CCCcCCccccccc
Confidence            9999999999754

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.97  E-value=4.8e-29  Score=202.63  Aligned_cols=234  Identities=10%  Similarity=0.087  Sum_probs=181.2

Q ss_pred             eeeccCCCcEEEEEEcC--------------CCCEEEEeecC------CeEEEEEccCCeeeeeeeeeeeceEEEEEecc
Q 023822           28 MSFRDYNGRISSMDFHK--------------SSSYLVTASDD------ESIRLYDVTAATCLKTINSKKYGVDLVCFTSH   87 (276)
Q Consensus        28 ~~~~~h~~~v~~~~~~~--------------~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~   87 (276)
                      ..+.+|...+..+++++              .+..++.++.+      +.|++||+. +.....+..|...+.+++|+|+
T Consensus       111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spd  189 (415)
T 2hqs_A          111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPD  189 (415)
T ss_dssp             EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTT
T ss_pred             eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCC
Confidence            55778888888777764              15667766654      799999997 4556778888889999999999


Q ss_pred             CCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEE-EeeCCC--eEEEEeccCceeeeeE-eecC
Q 023822           88 PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFI-SGSLDR--TVLLWDQRAEKCQGLL-RVQG  163 (276)
Q Consensus        88 ~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~--~i~iwd~~~~~~~~~~-~~~~  163 (276)
                      ++.+++++..+.+..|++||+.+++.. .+..|...+.+++|+|++++|+ +++.++  .|++||+++++..... +...
T Consensus       190 g~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~  268 (415)
T 2hqs_A          190 GSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSN  268 (415)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSC
T ss_pred             CCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCc
Confidence            999999987222359999999998765 4666888999999999999877 666655  4999999987764333 3345


Q ss_pred             CCeeEecCCCcEEEEee--CC--eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecC---CcEEEEECC
Q 023822          164 RPAAAYDDQGLVFAVAF--GG--YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME---GHIHVLDSF  236 (276)
Q Consensus       164 ~~~~~~~~~~~~l~~~~--d~--~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~  236 (276)
                      +..++|+|+++.|+.++  ++  .|++||+.+++.     ..+..+...+.+++|+|+|++|++++.+   ..|++||+.
T Consensus       269 ~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-----~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~  343 (415)
T 2hqs_A          269 NTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-----QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA  343 (415)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-----EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETT
T ss_pred             ccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-----EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECC
Confidence            66899999999777766  34  788889877542     2233455678899999999999988764   589999999


Q ss_pred             CCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCC
Q 023822          237 RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       237 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  273 (276)
                      +++.. .+.   .+. .+.+++|+|||++|++++.++
T Consensus       344 ~~~~~-~l~---~~~-~~~~~~~spdg~~l~~~s~~~  375 (415)
T 2hqs_A          344 TGGVQ-VLS---STF-LDETPSLAPNGTMVIYSSSQG  375 (415)
T ss_dssp             TCCEE-ECC---CSS-SCEEEEECTTSSEEEEEEEET
T ss_pred             CCCEE-Eec---CCC-CcCCeEEcCCCCEEEEEEcCC
Confidence            88774 343   233 899999999999999888765

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.97  E-value=2.7e-28  Score=189.00  Aligned_cols=237  Identities=11%  Similarity=0.080  Sum_probs=175.7

Q ss_pred             eeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccC-Ceeeeeeeee-eeceEEEEEeccCCeEEEeccCCCCCceEEE
Q 023822           29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA-ATCLKTINSK-KYGVDLVCFTSHPTTVIYSSKNGWDESLRLL  106 (276)
Q Consensus        29 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~  106 (276)
                      .+..|...|.+++|+|++++|++++ ++.|++||+.+ ++.......+ ...+.+++|+|+++.++++.... ++...+|
T Consensus        36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~-~~~~~l~  113 (297)
T 2ojh_A           36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVE-FGKSAIY  113 (297)
T ss_dssp             EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTT-TSSCEEE
T ss_pred             eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCC-CCcceEE
Confidence            4556889999999999999999986 78999999998 7776666555 36789999999999999988411 3455555


Q ss_pred             Ec--cCCceeeeecccCcceEEEEeccCCCEEE-EeeCCCeEEEEecc--CceeeeeE-eecCCCeeEecCCCcEEEEee
Q 023822          107 SL--HDNKYLRYFKGHHDRVVSLSLCSSKDCFI-SGSLDRTVLLWDQR--AEKCQGLL-RVQGRPAAAYDDQGLVFAVAF  180 (276)
Q Consensus       107 d~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~iwd~~--~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~  180 (276)
                      .+  .+++ ...+..+ ..+..++|+|++++|+ ++..++.+++|+++  +++..... +...+..+.|+|+++.++.+.
T Consensus       114 ~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  191 (297)
T 2ojh_A          114 LLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNS  191 (297)
T ss_dssp             EEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEE
T ss_pred             EEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEe
Confidence            54  4444 3444433 3488999999999777 77889999999864  33332222 334567899999998766554


Q ss_pred             --CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecC-----------CcEEEEECCCCcEEEEeecC
Q 023822          181 --GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME-----------GHIHVLDSFRGTLLSTYNVK  247 (276)
Q Consensus       181 --d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~  247 (276)
                        ++.+++|++......   ...+..+...+..++|+|+|++|++++.+           +.|++||+.+++........
T Consensus       192 ~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~  268 (297)
T 2ojh_A          192 SRTGQMQIWRVRVDGSS---VERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLF  268 (297)
T ss_dssp             CTTSSCEEEEEETTSSC---EEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEE
T ss_pred             cCCCCccEEEECCCCCC---cEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccC
Confidence              788999988632221   34455566778899999999999888765           56999999888764333211


Q ss_pred             CCCCCceEEEEECCCCcEEEEecCCC
Q 023822          248 PVSRNSTLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       248 ~~~~~~v~~~~~s~~g~~l~~~~~dg  273 (276)
                       ++...+..++|+|+|++|++++.+.
T Consensus       269 -~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          269 -GGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             -ESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             -CCCcccccceECCCCCEEEEEEecc
Confidence             3677889999999999988877664

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.96  E-value=4e-27  Score=204.75  Aligned_cols=232  Identities=11%  Similarity=0.048  Sum_probs=181.9

Q ss_pred             CCcEEEEEEcCCCCEEEEeec-CC-----eEEEEEccCCeeeeeeeeee------------------------eceEEEE
Q 023822           34 NGRISSMDFHKSSSYLVTASD-DE-----SIRLYDVTAATCLKTINSKK------------------------YGVDLVC   83 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~~~~~-d~-----~i~iwd~~~~~~~~~~~~~~------------------------~~v~~~~   83 (276)
                      ...+.+++|+|||++|++++. |+     .|++||+.+++....+..+.                        ..+..++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            457999999999999999998 88     89999999988766665443                        2378999


Q ss_pred             EeccCCeEEEeccCCCCCceEEEEccCCc--eeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEee
Q 023822           84 FTSHPTTVIYSSKNGWDESLRLLSLHDNK--YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV  161 (276)
Q Consensus        84 ~~~~~~~l~~~~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  161 (276)
                      |+||+++|++++    ++.|++||+.+++  ....+..|...+..++|+|||++|+.++ ++.|++||+.+++.......
T Consensus       116 ~SpDg~~l~~~~----~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~  190 (741)
T 2ecf_A          116 WSPDAQRLLFPL----GGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTAD  190 (741)
T ss_dssp             ECTTSSEEEEEE----TTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCC
T ss_pred             ECCCCCEEEEEe----CCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccC
Confidence            999999999988    6899999999873  4455667888899999999999999887 56999999998876654422


Q ss_pred             cC------------------CCeeEecCCCcEEEEee-CC---------------------------------eEEEEec
Q 023822          162 QG------------------RPAAAYDDQGLVFAVAF-GG---------------------------------YIRMFDA  189 (276)
Q Consensus       162 ~~------------------~~~~~~~~~~~~l~~~~-d~---------------------------------~i~~~d~  189 (276)
                      ..                  +..++|+|+|+.|+.+. |+                                 .|++||+
T Consensus       191 ~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~  270 (741)
T 2ecf_A          191 GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISP  270 (741)
T ss_dssp             CCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECS
T ss_pred             CccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEEC
Confidence            21                  46799999998777765 44                                 7889998


Q ss_pred             cc-CCCCCeeeeeecCCCCCceEEEECCCCcEEEEeec-----CCcEEEEECCCCcEEEEeecCCCCCC---ceEEEEEC
Q 023822          190 RK-YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM-----EGHIHVLDSFRGTLLSTYNVKPVSRN---STLEASFS  260 (276)
Q Consensus       190 ~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~---~v~~~~~s  260 (276)
                      .+ ++..  .+.....+...+..++| |||++|++++.     +..|++||+.+++....+..+  ...   .+..++|+
T Consensus       271 ~~~~~~~--~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~--~~~~~~~~~~~~~s  345 (741)
T 2ecf_A          271 AEQAQTQ--WIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHET--SPTWVPLHNSLRFL  345 (741)
T ss_dssp             STTCCCE--EECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEE--CSSCCCCCSCCEEC
T ss_pred             CCCCceE--EecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcC--CCCcCCcCCceEEC
Confidence            77 5531  11111145667899999 99999987654     567999999999887776532  112   45688999


Q ss_pred             CCCcEEEEecCCCCC
Q 023822          261 PEGMFVISGRVSPFS  275 (276)
Q Consensus       261 ~~g~~l~~~~~dg~v  275 (276)
                      |||+++++++.||++
T Consensus       346 pdg~~~~~~~~~g~~  360 (741)
T 2ecf_A          346 DDGSILWSSERTGFQ  360 (741)
T ss_dssp             TTSCEEEEECTTSSC
T ss_pred             CCCeEEEEecCCCcc
Confidence            999999999888853

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.96  E-value=7.7e-26  Score=189.26  Aligned_cols=238  Identities=12%  Similarity=0.097  Sum_probs=183.1

Q ss_pred             ccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEc--cCCeeeeeeeeeeeceEEEEEec----cCCeEEEecc
Q 023822           23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDV--TAATCLKTINSKKYGVDLVCFTS----HPTTVIYSSK   96 (276)
Q Consensus        23 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~--~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~   96 (276)
                      +.+...++..+.. +.+++|+|+|++|++++.|+.|++||+  .+++.+.++.. ...+..++|+|    ++++++++..
T Consensus       168 t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~  245 (543)
T 1nir_A          168 SKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAY  245 (543)
T ss_dssp             TCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEE
T ss_pred             CceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEc
Confidence            3455566663333 889999999999999999999999999  88888888874 44679999999    9999999875


Q ss_pred             CCCCCceEEEEccCCceeeeecc----------cCc-ceEEEEeccCCC-EEEEeeCCCeEEEEeccCceeee--eE-ee
Q 023822           97 NGWDESLRLLSLHDNKYLRYFKG----------HHD-RVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQG--LL-RV  161 (276)
Q Consensus        97 ~~~d~~i~~~d~~~~~~~~~~~~----------~~~-~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~--~~-~~  161 (276)
                      .  ++.|.+||..+++++..+..          |.. .+..+.++|++. ++++...++.|.+||+.+.+...  .+ ..
T Consensus       246 ~--~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~  323 (543)
T 1nir_A          246 W--PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAA  323 (543)
T ss_dssp             E--SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECC
T ss_pred             c--CCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccC
Confidence            2  89999999999998887764          223 688999999776 56677778999999998765443  33 23


Q ss_pred             cCCCeeEecCCCcEEEEee--CCeEEEEecccCCCCCeeeeeec--CCCCCceEEEECCC-CcEEEEee-cCCcEEEEEC
Q 023822          162 QGRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDIFSVG--GDISDANVVKFSND-GRLMLLTT-MEGHIHVLDS  235 (276)
Q Consensus       162 ~~~~~~~~~~~~~~l~~~~--d~~i~~~d~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~-~~~l~~~~-~dg~i~i~d~  235 (276)
                      .....+.|+|++++++++.  +++|.+||..+++.  .......  .|......+ ++|+ |.+++++. .|++|.+||+
T Consensus       324 ~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l--~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~  400 (543)
T 1nir_A          324 PFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRL--SALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGT  400 (543)
T ss_dssp             SSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEE--EEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEEC
T ss_pred             cCccCceECCCCCEEEEEecCCCeEEEEECCCCeE--EEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEe
Confidence            4466899999998765544  79999999998653  1112211  133323333 4677 66666665 5899999999


Q ss_pred             CC-------CcEEEEeecCCCCCCceEEEEECCCCcEEEEec
Q 023822          236 FR-------GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGR  270 (276)
Q Consensus       236 ~~-------~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  270 (276)
                      .+       .++++++.   .+...+..++|+|+|++|++++
T Consensus       401 ~~~~~~~~~~~~v~~l~---~~g~~~~~v~~~pdg~~l~v~~  439 (543)
T 1nir_A          401 DPKNHPQYAWKKVAELQ---GQGGGSLFIKTHPKSSHLYVDT  439 (543)
T ss_dssp             CTTTCTTTBTSEEEEEE---CSCSCCCCEECCTTCCEEEECC
T ss_pred             CCCCCchhcCeEEEEEE---cCCCCceEEEcCCCCCcEEEec
Confidence            98       89999998   6777888899999999999987

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.95  E-value=7.2e-26  Score=179.16  Aligned_cols=235  Identities=10%  Similarity=0.102  Sum_probs=167.1

Q ss_pred             cCCCcEEEEEEcCCCCEEEEeecC-CeEEEEEcc--CCe--eeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEE
Q 023822           32 DYNGRISSMDFHKSSSYLVTASDD-ESIRLYDVT--AAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL  106 (276)
Q Consensus        32 ~h~~~v~~~~~~~~~~~l~~~~~d-~~i~iwd~~--~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~  106 (276)
                      .|...+.+++|+|++++|++++.+ +.|.+|++.  +++  .+..+..+. .+..++|+|+++++++++..  ++.|.+|
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~--~~~i~~~  111 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYN--AGNVSVT  111 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETT--TTEEEEE
T ss_pred             ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecC--CCeEEEE
Confidence            467789999999999999888876 999999997  444  334444433 78899999999988777642  7889999


Q ss_pred             Ecc---CCceeeeecccCcceEEEEeccCCCEEEEee-CCCeEEEEeccC-ceeee----eEe---ecCCCeeEecCCCc
Q 023822          107 SLH---DNKYLRYFKGHHDRVVSLSLCSSKDCFISGS-LDRTVLLWDQRA-EKCQG----LLR---VQGRPAAAYDDQGL  174 (276)
Q Consensus       107 d~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~-~~~~~----~~~---~~~~~~~~~~~~~~  174 (276)
                      |+.   ..+....+.. ...+.+++|+|+++++++++ .++.|.+||+.+ ++...    ...   ...+..++|+|+++
T Consensus       112 d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~  190 (343)
T 1ri6_A          112 RLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQ  190 (343)
T ss_dssp             EEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSS
T ss_pred             ECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCC
Confidence            994   3344445543 34588999999999888777 899999999987 54332    221   12445799999998


Q ss_pred             EEEEee--CCeEEEEecccCCCCC--eeeee-ecCC---CCCceEEEECCCCcEEEEe-ecCCcEEEEECC--CC--cEE
Q 023822          175 VFAVAF--GGYIRMFDARKYEKGP--FDIFS-VGGD---ISDANVVKFSNDGRLMLLT-TMEGHIHVLDSF--RG--TLL  241 (276)
Q Consensus       175 ~l~~~~--d~~i~~~d~~~~~~~~--~~~~~-~~~~---~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~--~~--~~~  241 (276)
                      +++++.  ++.|.+||+.......  ..... ....   ...+..++|+|+|++|+++ ..++.|.+||+.  ++  +.+
T Consensus       191 ~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~  270 (343)
T 1ri6_A          191 YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKE  270 (343)
T ss_dssp             EEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEE
T ss_pred             EEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEe
Confidence            665443  7999999996422111  11111 1111   2345689999999888754 478999999998  33  344


Q ss_pred             EEeecCCCCCCceEEEEECCCCcEEEEec-CCCC
Q 023822          242 STYNVKPVSRNSTLEASFSPEGMFVISGR-VSPF  274 (276)
Q Consensus       242 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~dg~  274 (276)
                      ..+.   .+ ..+..++|+|+|++|++++ .++.
T Consensus       271 ~~~~---~~-~~~~~~~~s~dg~~l~~~~~~~~~  300 (343)
T 1ri6_A          271 GFQP---TE-TQPRGFNVDHSGKYLIAAGQKSHH  300 (343)
T ss_dssp             EEEE---CS-SSCCCEEECTTSSEEEEECTTTCE
T ss_pred             eeec---CC-CccceEEECCCCCEEEEecCCCCe
Confidence            4444   23 3388999999999888877 4554

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.95  E-value=2.2e-25  Score=177.20  Aligned_cols=228  Identities=11%  Similarity=0.068  Sum_probs=179.9

Q ss_pred             CcEEEEEEcCCCCEEEE-eecCCeEEEEEccCCeeeeeeeeeee---------ceEEEEEeccCCeEEEeccCCCCCceE
Q 023822           35 GRISSMDFHKSSSYLVT-ASDDESIRLYDVTAATCLKTINSKKY---------GVDLVCFTSHPTTVIYSSKNGWDESLR  104 (276)
Q Consensus        35 ~~v~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~~~~~d~~i~  104 (276)
                      ..+..++|+|++++++. ...++.|.+||..+++.+..+..+..         .+..++|+|+++.++++... .++.|.
T Consensus        89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-~~~~i~  167 (353)
T 3vgz_A           89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG-KESVIW  167 (353)
T ss_dssp             SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES-SSCEEE
T ss_pred             CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC-CCceEE
Confidence            44778999999996554 45579999999999998887765432         26889999999988887631 178899


Q ss_pred             EEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeec------CCCeeEecCCCcEEEE
Q 023822          105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ------GRPAAAYDDQGLVFAV  178 (276)
Q Consensus       105 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~  178 (276)
                      +||+.+++....+..+...+..++|+|+++++++++.++.|.+||+.+++....+...      ....++++|+++.+++
T Consensus       168 ~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~  247 (353)
T 3vgz_A          168 VVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFI  247 (353)
T ss_dssp             EEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEE
T ss_pred             EEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEE
Confidence            9999999988888756666889999999999999999999999999999887776431      1335899999986665


Q ss_pred             ee--CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEee-cCCcEEEEECCCCcEEEEeecCCCCCCceE
Q 023822          179 AF--GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGTLLSTYNVKPVSRNSTL  255 (276)
Q Consensus       179 ~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  255 (276)
                      +.  ++.|.+||..+++.    .......  ....++|+|+|+++++++ .++.|.+||..+++.+..+.    ....+.
T Consensus       248 ~~~~~~~v~~~d~~~~~~----~~~~~~~--~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~----~~~~~~  317 (353)
T 3vgz_A          248 TDSKAAEVLVVDTRNGNI----LAKVAAP--ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD----TPTHPN  317 (353)
T ss_dssp             EESSSSEEEEEETTTCCE----EEEEECS--SCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE----CCSEEE
T ss_pred             EeCCCCEEEEEECCCCcE----EEEEEcC--CCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe----cCCCCC
Confidence            55  59999999987553    2222222  235699999999766655 68999999999999988887    345789


Q ss_pred             EEEECCCCcEEEEecCCC
Q 023822          256 EASFSPEGMFVISGRVSP  273 (276)
Q Consensus       256 ~~~~s~~g~~l~~~~~dg  273 (276)
                      .++|+|||++|+++..++
T Consensus       318 ~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          318 SLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             EEEECTTSCEEEEEEECC
T ss_pred             eEEEcCCCCEEEEEEccc
Confidence            999999999887776653

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.95  E-value=1.3e-25  Score=178.28  Aligned_cols=235  Identities=11%  Similarity=0.107  Sum_probs=163.6

Q ss_pred             cCCCcEEEEEEcCCCCEEEEeec---CCeEEEEEccCCe--eeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEE
Q 023822           32 DYNGRISSMDFHKSSSYLVTASD---DESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL  106 (276)
Q Consensus        32 ~h~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~  106 (276)
                      .+...+..++|+|+|+ |++++.   ++.|++|++.+++  .+..+..+...+..++|+|++++++++...  ++.|.+|
T Consensus        37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~--~~~v~v~  113 (347)
T 3hfq_A           37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYH--KGTAEVM  113 (347)
T ss_dssp             EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETT--TTEEEEE
T ss_pred             eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCC--CCEEEEE
Confidence            3456678899999999 555554   6899999998765  344445566778999999999999888742  8999999


Q ss_pred             EccC-Cc--eeeeecc---------cCcceEEEEeccCCCEEEEeeCCCeEEEEecc-Cceeeee--Ee---ecCCCeeE
Q 023822          107 SLHD-NK--YLRYFKG---------HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR-AEKCQGL--LR---VQGRPAAA  168 (276)
Q Consensus       107 d~~~-~~--~~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~--~~---~~~~~~~~  168 (276)
                      ++.. +.  .+..+..         +...+.+++|+|+++++++...++.|.+||+. .++....  +.   ......++
T Consensus       114 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~  193 (347)
T 3hfq_A          114 KIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLV  193 (347)
T ss_dssp             EECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEE
T ss_pred             EeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEE
Confidence            9963 22  2222221         12247889999999966666678899999998 4433221  11   12345789


Q ss_pred             ecCCCcEEEEee--CCeEEEEecccCCCCCeeeeeecCCC------CCceEEEECCCCcEEEE-eecCCcEEEEECCCC-
Q 023822          169 YDDQGLVFAVAF--GGYIRMFDARKYEKGPFDIFSVGGDI------SDANVVKFSNDGRLMLL-TTMEGHIHVLDSFRG-  238 (276)
Q Consensus       169 ~~~~~~~l~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~-  238 (276)
                      |+|++++++++.  ++.|.+|++.................      ..+..++|+|+|++|++ ...++.|.+|++... 
T Consensus       194 ~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g  273 (347)
T 3hfq_A          194 FSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG  273 (347)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC
Confidence            999998665544  79999999875221111111221111      34788999999998755 456899999998732 


Q ss_pred             --cEEEEeecCCCCCCceEEEEECCCCcEEEEecCC
Q 023822          239 --TLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVS  272 (276)
Q Consensus       239 --~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  272 (276)
                        +.+..+.   .+...+..++|+|||++|++++.+
T Consensus       274 ~~~~~~~~~---~~~~~~~~~~~spdg~~l~v~~~~  306 (347)
T 3hfq_A          274 HLTLIQQIS---TEGDFPRDFDLDPTEAFVVVVNQN  306 (347)
T ss_dssp             CEEEEEEEE---CSSSCCCEEEECTTSSEEEEEETT
T ss_pred             cEEEeEEEe---cCCCCcCeEEECCCCCEEEEEEcC
Confidence              3444444   345678899999999988887754

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.95  E-value=2.1e-25  Score=175.94  Aligned_cols=242  Identities=12%  Similarity=0.101  Sum_probs=171.2

Q ss_pred             ccceeeccCCCcEEEEEEcCCCCEEEEeec-CCeEEEEEccCCee-eeeeeeeeeceEEEEEeccCCeEEEeccCCCC-C
Q 023822           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASD-DESIRLYDVTAATC-LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD-E  101 (276)
Q Consensus        25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d-~  101 (276)
                      +....+..+...+ +++|+|+++++++++. ++.|.+||+.+++. ...+..+..+..+++|+|+++++++...   + +
T Consensus        31 ~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~~  106 (331)
T 3u4y_A           31 EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTG---LNH  106 (331)
T ss_dssp             CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCC---SSS
T ss_pred             ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecC---CCC
Confidence            3444455556667 9999999997766665 88999999999887 6666666655555999999999995543   3 3


Q ss_pred             --ceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEe-eCCCe-EEEEeccCceeee-----eE-eecCCCeeEecC
Q 023822          102 --SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISG-SLDRT-VLLWDQRAEKCQG-----LL-RVQGRPAAAYDD  171 (276)
Q Consensus       102 --~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~-i~iwd~~~~~~~~-----~~-~~~~~~~~~~~~  171 (276)
                        .|.+||+.+++.+..+..+ ....+++|+|++++++++ ..++. |.+|++.......     .+ .......++|+|
T Consensus       107 ~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~sp  185 (331)
T 3u4y_A          107 PFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTP  185 (331)
T ss_dssp             SCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECT
T ss_pred             cccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECC
Confidence              8999999999888777644 456899999999855554 55578 9999987543321     11 223456899999


Q ss_pred             CCcEEEEee--CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEee-cCCcEEEEECCCCcE--EEEeec
Q 023822          172 QGLVFAVAF--GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGTL--LSTYNV  246 (276)
Q Consensus       172 ~~~~l~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~--~~~~~~  246 (276)
                      +++.++++.  ++.|.+||+.+++.. .....+. ....+..++|+|+|++|++++ .++.|.+||+.+++.  +..+..
T Consensus       186 dg~~l~v~~~~~~~v~v~d~~~~~~~-~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~  263 (331)
T 3u4y_A          186 DGNFAFVANLIGNSIGILETQNPENI-TLLNAVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGH  263 (331)
T ss_dssp             TSSEEEEEETTTTEEEEEECSSTTSC-EEEEEEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEEC
T ss_pred             CCCEEEEEeCCCCeEEEEECCCCccc-ceeeecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccccc
Confidence            998554444  799999999875531 1122222 335678899999999776655 577899999999887  443331


Q ss_pred             CC-CCCC---ceEEEEECCCCcEEEEecCCC
Q 023822          247 KP-VSRN---STLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       247 ~~-~~~~---~v~~~~~s~~g~~l~~~~~dg  273 (276)
                      .. ....   ....++|+|||++|++++.++
T Consensus       264 ~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~  294 (331)
T 3u4y_A          264 GLLIDPRPLFGANQMALNKTETKLFISANIS  294 (331)
T ss_dssp             CCCCCCGGGTTCCCEEECTTSSEEEEEETTT
T ss_pred             ccccCCCCcccccceEECCCCCEEEEecCCC
Confidence            10 0112   224589999999887665543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.95  E-value=4.8e-25  Score=173.84  Aligned_cols=224  Identities=12%  Similarity=0.076  Sum_probs=167.7

Q ss_pred             EEcCCCCE-EEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCce-eeeec
Q 023822           41 DFHKSSSY-LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY-LRYFK  118 (276)
Q Consensus        41 ~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~-~~~~~  118 (276)
                      .|.+++++ +++++.++.|.+||+.+++....+..+...+ .++|+|+++++++++..  ++.|.+||+.+++. ...+.
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~--~~~i~~~d~~~~~~~~~~~~   80 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDF--CQTLVQIETQLEPPKVVAIQ   80 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEEST--TCEEEEEECSSSSCEEEEEE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCC--CCeEEEEECCCCceeEEecc
Confidence            45555554 6777889999999999999888877666666 99999999987777653  78999999999987 77777


Q ss_pred             ccCcceEEEEeccCCCEEEEeeCCC---eEEEEeccCceeeeeEee-cCCCeeEecCCCcEE-EEee-CCe-EEEEeccc
Q 023822          119 GHHDRVVSLSLCSSKDCFISGSLDR---TVLLWDQRAEKCQGLLRV-QGRPAAAYDDQGLVF-AVAF-GGY-IRMFDARK  191 (276)
Q Consensus       119 ~~~~~i~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~l-~~~~-d~~-i~~~d~~~  191 (276)
                      .+..+..+++|+|++++++++..++   .|.+||+.+++.+..+.. .....++|+|+++.+ ++.. ++. |.+|++..
T Consensus        81 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~  160 (331)
T 3u4y_A           81 EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA  160 (331)
T ss_dssp             ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred             cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence            6666666599999999888655553   899999999988877743 345689999999744 4444 577 99999875


Q ss_pred             CCCCCeeeeeecCCCCCceEEEECCCCcEEEEee-cCCcEEEEECCCCcE---EEEeecCCCCCCceEEEEECCCCcEEE
Q 023822          192 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGTL---LSTYNVKPVSRNSTLEASFSPEGMFVI  267 (276)
Q Consensus       192 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~---~~~~~~~~~~~~~v~~~~~s~~g~~l~  267 (276)
                      .................+..++|+|+|+++++++ .++.|++||+.+++.   +..+.    ....+..++|+|||++|+
T Consensus       161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~----~~~~~~~~~~spdg~~l~  236 (331)
T 3u4y_A          161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG----TNNLPGTIVVSRDGSTVY  236 (331)
T ss_dssp             TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE----CSSCCCCEEECTTSSEEE
T ss_pred             CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc----CCCCCceEEECCCCCEEE
Confidence            3321000011113344578999999999665554 688999999999988   77666    346778899999999776


Q ss_pred             EecC
Q 023822          268 SGRV  271 (276)
Q Consensus       268 ~~~~  271 (276)
                      +++.
T Consensus       237 v~~~  240 (331)
T 3u4y_A          237 VLTE  240 (331)
T ss_dssp             EECS
T ss_pred             EEEc
Confidence            6543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.95  E-value=8.5e-25  Score=173.78  Aligned_cols=232  Identities=10%  Similarity=0.076  Sum_probs=179.7

Q ss_pred             CCcEEEEEEcCCCCEEEEeec-------CCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEE
Q 023822           34 NGRISSMDFHKSSSYLVTASD-------DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL  106 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~~~~~-------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~  106 (276)
                      ...+..++|+|+++++++++.       ++.|.+||..+++.+..+... ..+..++|+|++++++++...  ++.|.+|
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~--~~~v~~~  116 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTV--NSAVTAI  116 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETT--TTEEEEE
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecC--CCEEEEE
Confidence            456889999999998888773       568999999999988877653 357889999999977766542  7899999


Q ss_pred             EccCCceeeeecccCc---------ceEEEEeccCCCEEEEee--CCCeEEEEeccCceeeeeEe--ecCCCeeEecCCC
Q 023822          107 SLHDNKYLRYFKGHHD---------RVVSLSLCSSKDCFISGS--LDRTVLLWDQRAEKCQGLLR--VQGRPAAAYDDQG  173 (276)
Q Consensus       107 d~~~~~~~~~~~~~~~---------~i~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~  173 (276)
                      |+.+++.+..+..+..         .+.+++|+|+++++++++  .++.|.+||+++++....+.  ......++++|++
T Consensus       117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg  196 (353)
T 3vgz_A          117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEG  196 (353)
T ss_dssp             ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTT
T ss_pred             eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCC
Confidence            9999998877765432         268899999999777766  47899999999998888774  3347789999999


Q ss_pred             cEEEEee-CCeEEEEecccCCCCCeeeeee--cCCCCCceEEEECCCCcEEEEeec-CCcEEEEECCCCcEEEEeecCCC
Q 023822          174 LVFAVAF-GGYIRMFDARKYEKGPFDIFSV--GGDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFRGTLLSTYNVKPV  249 (276)
Q Consensus       174 ~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~  249 (276)
                      +.++++. ++.|.+||..+++..  .....  ..+...+..++|+|+|+++++++. ++.|.+||..+++.+..+..   
T Consensus       197 ~~l~~~~~~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~---  271 (353)
T 3vgz_A          197 KRLYTTNADGELITIDTADNKIL--SRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA---  271 (353)
T ss_dssp             TEEEEECTTSEEEEEETTTTEEE--EEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC---
T ss_pred             CEEEEEcCCCeEEEEECCCCeEE--EEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc---
Confidence            8777776 899999999875531  11111  123446778999999998777665 48999999999999888873   


Q ss_pred             CCCceEEEEECCCCcEEEEec-CCCCC
Q 023822          250 SRNSTLEASFSPEGMFVISGR-VSPFS  275 (276)
Q Consensus       250 ~~~~v~~~~~s~~g~~l~~~~-~dg~v  275 (276)
                      ..  ...++|+|+|+++++++ .++.+
T Consensus       272 ~~--~~~~~~s~dg~~l~v~~~~~~~v  296 (353)
T 3vgz_A          272 PE--SLAVLFNPARNEAYVTHRQAGKV  296 (353)
T ss_dssp             SS--CCCEEEETTTTEEEEEETTTTEE
T ss_pred             CC--CceEEECCCCCEEEEEECCCCeE
Confidence            22  25689999999665554 45543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.95  E-value=1.8e-25  Score=176.47  Aligned_cols=228  Identities=11%  Similarity=-0.016  Sum_probs=176.3

Q ss_pred             cEEEEEEcCCCCEEE-EeecCCeEEEEEccCCeeeeeeeee-----eeceEEEEEeccCCeEEEeccC------C---CC
Q 023822           36 RISSMDFHKSSSYLV-TASDDESIRLYDVTAATCLKTINSK-----KYGVDLVCFTSHPTTVIYSSKN------G---WD  100 (276)
Q Consensus        36 ~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~~------~---~d  100 (276)
                      .+..++|+|+++.++ ++..++.|.+||+.+++.+..+...     ...+..++|+|++++++++...      .   .+
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence            478899999998664 5556789999999999887766532     2367889999999999888510      0   16


Q ss_pred             CceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecC-CCeeEecCCCcEEEEe
Q 023822          101 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-RPAAAYDDQGLVFAVA  179 (276)
Q Consensus       101 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~  179 (276)
                      +.|.+||+.+++....+.. ...+.+++|+|++++++++  ++.|.+||+.+++....+.... ...+.++|++..++..
T Consensus       115 ~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  191 (337)
T 1pby_B          115 TRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQ  191 (337)
T ss_dssp             CEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCC
T ss_pred             ceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeee
Confidence            9999999999888777664 4567889999999988887  6889999999998877664333 2355888988765544


Q ss_pred             e--CC-----------------------eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEE
Q 023822          180 F--GG-----------------------YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD  234 (276)
Q Consensus       180 ~--d~-----------------------~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  234 (276)
                      .  ++                       .|.+||+++++..   ......+...+..++|+|+|++++++  ++.|++||
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~---~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d  266 (337)
T 1pby_B          192 HESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA---MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFD  266 (337)
T ss_dssp             CTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE---EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEE
T ss_pred             ccCCCceeeeeeccccccccccccccccceEEEeCCCCCce---EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEE
Confidence            3  22                       4789999875532   33344455678889999999999888  78999999


Q ss_pred             CCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          235 SFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      +.+++.+..+.    ....+.+++|+|+|++|++++.++.+
T Consensus       267 ~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~~~i  303 (337)
T 1pby_B          267 LEKNASIKRVP----LPHSYYSVNVSTDGSTVWLGGALGDL  303 (337)
T ss_dssp             TTTTEEEEEEE----CSSCCCEEEECTTSCEEEEESBSSEE
T ss_pred             CCCCcCcceec----CCCceeeEEECCCCCEEEEEcCCCcE
Confidence            99999888876    34567899999999999988877654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.94  E-value=1.3e-24  Score=181.86  Aligned_cols=226  Identities=14%  Similarity=0.153  Sum_probs=176.3

Q ss_pred             EEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEc--cCCceeeeec
Q 023822           41 DFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL--HDNKYLRYFK  118 (276)
Q Consensus        41 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~--~~~~~~~~~~  118 (276)
                      +++|++.++++++.|++|.+||..+++++.++..+.. +..++|+|+++++++++.   ++.|.+||+  .+++.+..+.
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~---d~~V~v~D~~~~t~~~~~~i~  219 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGR---DARIDMIDLWAKEPTKVAEIK  219 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEET---TSEEEEEETTSSSCEEEEEEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECC---CCeEEEEECcCCCCcEEEEEe
Confidence            4889999999999999999999999999988874433 889999999999999998   899999999  8888888887


Q ss_pred             ccCcceEEEEecc----CCCEEEEeeC-CCeEEEEeccCceeeeeEeec-------------CCCeeEecCCCcEEEEee
Q 023822          119 GHHDRVVSLSLCS----SKDCFISGSL-DRTVLLWDQRAEKCQGLLRVQ-------------GRPAAAYDDQGLVFAVAF  180 (276)
Q Consensus       119 ~~~~~i~~~~~~~----~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~~  180 (276)
                       +...+..++|+|    +++++++++. +++|.+||..+.+++..+...             .+..+.++|++..++++.
T Consensus       220 -~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~  298 (543)
T 1nir_A          220 -IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV  298 (543)
T ss_dssp             -CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred             -cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEE
Confidence             455679999999    9999988885 899999999999888877431             345788999776555544


Q ss_pred             --CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEee-cCCcEEEEECCCCcEEEEeecCC-CCCCceEE
Q 023822          181 --GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGTLLSTYNVKP-VSRNSTLE  256 (276)
Q Consensus       181 --d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~-~~~~~v~~  256 (276)
                        ++.|.+||+.+.+..  ....+ .+...+..++|+|+|+++++++ .++.|.+||..+++++..+.... .|.+....
T Consensus       299 ~~~g~i~vvd~~~~~~l--~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~  375 (543)
T 1nir_A          299 KETGKVLLVNYKDIDNL--TVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGAN  375 (543)
T ss_dssp             TTTTEEEEEECTTSSSC--EEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEE
T ss_pred             CCCCeEEEEEecCCCcc--eeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcc
Confidence              799999999875532  12222 2445688899999999877654 58899999999999998887311 14333333


Q ss_pred             EEECCC-CcEEEEec-CCCCC
Q 023822          257 ASFSPE-GMFVISGR-VSPFS  275 (276)
Q Consensus       257 ~~~s~~-g~~l~~~~-~dg~v  275 (276)
                      + ++|+ |.+++++. .|++|
T Consensus       376 ~-~~p~~g~~~~s~~~~d~~V  395 (543)
T 1nir_A          376 F-VHPKYGPVWSTSHLGDGSI  395 (543)
T ss_dssp             E-EETTTEEEEEEEBSSSSEE
T ss_pred             c-CCCCCccEEEeccCCCceE
Confidence            3 4677 66677765 46665

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.94  E-value=9.8e-25  Score=173.10  Aligned_cols=225  Identities=11%  Similarity=0.038  Sum_probs=169.3

Q ss_pred             EEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeee-eceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeee
Q 023822           39 SMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK-YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF  117 (276)
Q Consensus        39 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~  117 (276)
                      .+++++++.++++++.++.|++||+.+++.+..+..+. ..+..++|+|+++.++++...  ++.|.+||+.+++....+
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~--~~~i~~~d~~t~~~~~~~   81 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH--YGDIYGIDLDTCKNTFHA   81 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETT--TTEEEEEETTTTEEEEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCC--CCcEEEEeCCCCcEEEEE
Confidence            45678888899999999999999999999888776543 257889999999977665432  899999999999887766


Q ss_pred             cccC------cceEEEEeccCCCEEEEeeCC------------CeEEEEeccCceeee---eE-eecCCCeeEecCCCcE
Q 023822          118 KGHH------DRVVSLSLCSSKDCFISGSLD------------RTVLLWDQRAEKCQG---LL-RVQGRPAAAYDDQGLV  175 (276)
Q Consensus       118 ~~~~------~~i~~~~~~~~~~~l~~~~~d------------~~i~iwd~~~~~~~~---~~-~~~~~~~~~~~~~~~~  175 (276)
                      ..+.      ..+..++|+|+++++++++.+            +.|.+||+.+++...   .+ ....+.+++|+|++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~l  161 (349)
T 1jmx_B           82 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSL  161 (349)
T ss_dssp             ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCE
T ss_pred             EcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCcE
Confidence            5322      237889999999999988865            899999998854332   23 2334678889999995


Q ss_pred             EEEeeCCeEEEEecccCCCCCeeeeeec----------------------------------------------------
Q 023822          176 FAVAFGGYIRMFDARKYEKGPFDIFSVG----------------------------------------------------  203 (276)
Q Consensus       176 l~~~~d~~i~~~d~~~~~~~~~~~~~~~----------------------------------------------------  203 (276)
                      ++ + ++.|.+||..+++..  ......                                                    
T Consensus       162 ~~-~-~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  237 (349)
T 1jmx_B          162 YV-A-GPDIYKMDVKTGKYT--VALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLS  237 (349)
T ss_dssp             EE-E-SSSEEEECTTTCCEE--EEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEE
T ss_pred             EE-c-cCcEEEEeCCCCcee--ccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEE
Confidence            54 3 445999998775421  011000                                                    


Q ss_pred             --------------CCCCCceEEEECC-CCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEE
Q 023822          204 --------------GDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS  268 (276)
Q Consensus       204 --------------~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  268 (276)
                                    .....+..++|+| +|++++++  ++.|.+||+.+++.+..+.    ....+.+++|+|+|++|++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~  311 (349)
T 1jmx_B          238 VDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN----LDHTYYCVAFDKKGDKLYL  311 (349)
T ss_dssp             EETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE----CSSCCCEEEECSSSSCEEE
T ss_pred             EeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc----CCCCccceEECCCCCEEEE
Confidence                          0112345678889 99998888  8899999999999888876    3345778999999998888


Q ss_pred             ecCCCCC
Q 023822          269 GRVSPFS  275 (276)
Q Consensus       269 ~~~dg~v  275 (276)
                      ++.++.+
T Consensus       312 ~~~~~~v  318 (349)
T 1jmx_B          312 GGTFNDL  318 (349)
T ss_dssp             ESBSSEE
T ss_pred             ecCCCeE
Confidence            8777653

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.94  E-value=2.4e-25  Score=188.55  Aligned_cols=230  Identities=11%  Similarity=0.036  Sum_probs=168.2

Q ss_pred             CCcEEEEEEcCCCCEEEEeec-CCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccC--
Q 023822           34 NGRISSMDFHKSSSYLVTASD-DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD--  110 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~--  110 (276)
                      ..+|++++|+|||+.||+++. ||+++||++.+++..+....+...+..+.|+|+ +.++++...+.+....+|.+..  
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~   99 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR   99 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence            457999999999999999887 999999999776655444333368999999999 6565554312255566665543  


Q ss_pred             CceeeeecccCcceEEEEeccCCCE-EEEeeCCCeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEee-C----CeE
Q 023822          111 NKYLRYFKGHHDRVVSLSLCSSKDC-FISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF-G----GYI  184 (276)
Q Consensus       111 ~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-d----~~i  184 (276)
                      ......+.... .+...+|+|+++. +++...++.+.+||+.+++......... ..++|+|+|+.++.+. +    ..|
T Consensus       100 ~g~~~~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~-~~~~~spDG~~la~~~~~~~~~~~i  177 (582)
T 3o4h_A          100 PGEEQRLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG-FGFVSDIRGDLIAGLGFFGGGRVSL  177 (582)
T ss_dssp             TTCCEECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS-CEEEEEEETTEEEEEEEEETTEEEE
T ss_pred             CCccccccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC-ceEEECCCCCEEEEEEEcCCCCeEE
Confidence            22222343222 3446688888863 3333444455699999987666554444 8899999999998665 4    689


Q ss_pred             EEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCC--cEEEEECCCCcEEEEeecCCCCCCceEEEE----
Q 023822          185 RMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG--HIHVLDSFRGTLLSTYNVKPVSRNSTLEAS----  258 (276)
Q Consensus       185 ~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~----  258 (276)
                      ++||+.+++.     ..+..+...+..++|+|||+.|+++..++  .|++||+.+++.. .+.   .+...+..++    
T Consensus       178 ~~~d~~~g~~-----~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~---~~~~~~~~~~~~~~  248 (582)
T 3o4h_A          178 FTSNLSSGGL-----RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLE---LPSKDFSSYRPTAI  248 (582)
T ss_dssp             EEEETTTCCC-----EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECC---CSCSHHHHHCCSEE
T ss_pred             EEEcCCCCCc-----eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ecc---CCCcChhhhhhccc
Confidence            9999987653     24456777789999999999999888888  8999999998887 555   5666677777    


Q ss_pred             ----ECCCCcEEEEecCCCCC
Q 023822          259 ----FSPEGMFVISGRVSPFS  275 (276)
Q Consensus       259 ----~s~~g~~l~~~~~dg~v  275 (276)
                          |+|||.++++++.||.+
T Consensus       249 ~~~~~spdg~~~~~~~~~g~~  269 (582)
T 3o4h_A          249 TWLGYLPDGRLAVVARREGRS  269 (582)
T ss_dssp             EEEEECTTSCEEEEEEETTEE
T ss_pred             cceeEcCCCcEEEEEEcCCcE
Confidence                99999989999888753

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.94  E-value=1.1e-24  Score=168.52  Aligned_cols=211  Identities=11%  Similarity=0.071  Sum_probs=161.0

Q ss_pred             EeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccC-Cceeeeeccc-CcceEEEE
Q 023822           51 TASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD-NKYLRYFKGH-HDRVVSLS  128 (276)
Q Consensus        51 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~-~~~~~~~~~~-~~~i~~~~  128 (276)
                      .++.|+.|++||+.+++.. .+..|...+.+++|+|++++++++.    ++.|++||+.+ ++.......+ ...+.+++
T Consensus        17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~   91 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS----EGLLYRLSLAGDPSPEKVDTGFATICNNDHG   91 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE----TTEEEEEESSSCCSCEECCCTTCCCBCSCCE
T ss_pred             CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc----CCeEEEEeCCCCCCceEeccccccccccceE
Confidence            4467899999999988765 4556788899999999999999986    88999999999 8777666555 36789999


Q ss_pred             eccCCCEEEEeeC--CCe--EEEEeccCceeeeeEeecCCCeeEecCCCcEEE-Eee-CCeEEEEecccCCCCCeeeeee
Q 023822          129 LCSSKDCFISGSL--DRT--VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFA-VAF-GGYIRMFDARKYEKGPFDIFSV  202 (276)
Q Consensus       129 ~~~~~~~l~~~~~--d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~-d~~i~~~d~~~~~~~~~~~~~~  202 (276)
                      |+|++++|++++.  ++.  |..|++.+++.........+..++|+|+++.++ ++. ++.+++|++......   ...+
T Consensus        92 ~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~---~~~~  168 (297)
T 2ojh_A           92 ISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV---ETRL  168 (297)
T ss_dssp             ECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC---EEEC
T ss_pred             ECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCc---ceEc
Confidence            9999999999983  344  455555555433322334466789999998776 343 899999997543221   3444


Q ss_pred             cCCCCCceEEEECCCCcEEEEee-cCCcEEEEECC-CCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCC
Q 023822          203 GGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSF-RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVS  272 (276)
Q Consensus       203 ~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  272 (276)
                      ..+...+.+++|+|+|++|++++ .++.+++|++. .+..+..+.   .+...+..++|+|+|++|++++.+
T Consensus       169 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~~~~  237 (297)
T 2ojh_A          169 THGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERIT---DSAYGDWFPHPSPSGDKVVFVSYD  237 (297)
T ss_dssp             CCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECC---CCSEEEEEEEECTTSSEEEEEEEE
T ss_pred             ccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEe---cCCcccCCeEECCCCCEEEEEEcC
Confidence            55667899999999999888766 58899999876 555566665   567889999999999999888765

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.94  E-value=4.9e-26  Score=197.44  Aligned_cols=229  Identities=10%  Similarity=0.063  Sum_probs=171.5

Q ss_pred             cEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeee---ceEEEEEeccCCeEEEeccCC------CCCceEEE
Q 023822           36 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKY---GVDLVCFTSHPTTVIYSSKNG------WDESLRLL  106 (276)
Q Consensus        36 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~~~------~d~~i~~~  106 (276)
                      .+.+++|+|||+++++ +.||+|++||+.+++....+..+..   .+..++|+||+++|+++....      .++.+.+|
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            4678999999997776 7899999999999988777766654   489999999999999987521      13789999


Q ss_pred             EccCCceeeee---cccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEee--cCC-----------------
Q 023822          107 SLHDNKYLRYF---KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV--QGR-----------------  164 (276)
Q Consensus       107 d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~-----------------  164 (276)
                      |+.+++. ..+   ..|...+..++|+|||++|+.++. +.|++||+.+++.......  ..+                 
T Consensus        97 d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~  174 (723)
T 1xfd_A           97 KIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT  174 (723)
T ss_dssp             ESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred             ECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccC
Confidence            9998875 333   334455889999999999999886 7999999998876655422  222                 


Q ss_pred             -CeeEecCCCcEEEEee-CC----------------------------------eEEEEecccCCCCCeeeeeecC----
Q 023822          165 -PAAAYDDQGLVFAVAF-GG----------------------------------YIRMFDARKYEKGPFDIFSVGG----  204 (276)
Q Consensus       165 -~~~~~~~~~~~l~~~~-d~----------------------------------~i~~~d~~~~~~~~~~~~~~~~----  204 (276)
                       ..++|+|+|+.|+.+. ++                                  .|++||+.+++.    ...+..    
T Consensus       175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~----~~~l~~~~~~  250 (723)
T 1xfd_A          175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH----DLEMMPPDDP  250 (723)
T ss_dssp             SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC----CEECCCCCCG
T ss_pred             cceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce----eEEeeCCccC
Confidence             5799999999887765 32                                  789999887653    122222    


Q ss_pred             --CCCCceEEEECCCCcEEEEeec----CCcEEEEECCCCcEEEEeecCCCCCCce----EEEEECCCCcEEEEe--cCC
Q 023822          205 --DISDANVVKFSNDGRLMLLTTM----EGHIHVLDSFRGTLLSTYNVKPVSRNST----LEASFSPEGMFVISG--RVS  272 (276)
Q Consensus       205 --~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~v----~~~~~s~~g~~l~~~--~~d  272 (276)
                        +...+..++|+|||++|++.+.    +..|++||+.+++....+..  .+...+    ..++|+|||+.|+..  ..+
T Consensus       251 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~--~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  328 (723)
T 1xfd_A          251 RMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED--ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQ  328 (723)
T ss_dssp             GGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE--ECSSCCCCCCCCCEECTTSCSEEEEEEECC
T ss_pred             CCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEe--ccCCEEeccCCCceEcCCCCeEEEEEeccc
Confidence              2456889999999998877653    35799999999987766542  123333    378999999977753  344


Q ss_pred             C
Q 023822          273 P  273 (276)
Q Consensus       273 g  273 (276)
                      +
T Consensus       329 ~  329 (723)
T 1xfd_A          329 G  329 (723)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.94  E-value=2.6e-24  Score=186.16  Aligned_cols=235  Identities=11%  Similarity=0.127  Sum_probs=172.9

Q ss_pred             eeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccC-----Ceeeeeeeeeeec--------------eEEEEEeccCC
Q 023822           29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA-----ATCLKTINSKKYG--------------VDLVCFTSHPT   89 (276)
Q Consensus        29 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-----~~~~~~~~~~~~~--------------v~~~~~~~~~~   89 (276)
                      .+..+...+.+++|+|||+.|+++ .|+.|++||+.+     ++.......+...              +..+.|+||++
T Consensus       115 ~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~  193 (706)
T 2z3z_A          115 YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGS  193 (706)
T ss_dssp             EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSS
T ss_pred             EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCC
Confidence            345567788999999999999985 689999999998     7766544443332              48999999999


Q ss_pred             eEEEeccC------------------------------CCCCceEEEEccCCceeeeec--ccCcceEEEEeccCCCEEE
Q 023822           90 TVIYSSKN------------------------------GWDESLRLLSLHDNKYLRYFK--GHHDRVVSLSLCSSKDCFI  137 (276)
Q Consensus        90 ~l~~~~~~------------------------------~~d~~i~~~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~  137 (276)
                      +|++++.+                              ..+..|++||+.+++......  .|...+.+++|+||+++|+
T Consensus       194 ~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~  273 (706)
T 2z3z_A          194 CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILY  273 (706)
T ss_dssp             EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEE
T ss_pred             EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEE
Confidence            99998620                              015789999999887654432  4667899999999999999


Q ss_pred             EeeCCC-----eEEEEeccCc-eeeeeEee-c-----CCCeeEecC--CCcEEEEee-CCeEEEEecccCCCCCeeeeee
Q 023822          138 SGSLDR-----TVLLWDQRAE-KCQGLLRV-Q-----GRPAAAYDD--QGLVFAVAF-GGYIRMFDARKYEKGPFDIFSV  202 (276)
Q Consensus       138 ~~~~d~-----~i~iwd~~~~-~~~~~~~~-~-----~~~~~~~~~--~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~  202 (276)
                      +++.++     .|++||+.++ ........ .     .+..+.|+|  ++++++++. ++.+++|++.....   ....+
T Consensus       274 ~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~---~~~~l  350 (706)
T 2z3z_A          274 VAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGR---LIRQV  350 (706)
T ss_dssp             EEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSC---EEEEC
T ss_pred             EEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCC---EEEec
Confidence            887775     8999999988 43333321 1     135689999  999888777 78888888762111   13344


Q ss_pred             cCCCCCceE-EEECCCCcEEEEeec-CC----cEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCC
Q 023822          203 GGDISDANV-VKFSNDGRLMLLTTM-EG----HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVS  272 (276)
Q Consensus       203 ~~~~~~i~~-~~~~~~~~~l~~~~~-dg----~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  272 (276)
                      ..+...+.. ++|+|+|+.|++++. ++    .|..||+.+++ ...+.    +...+.+++|+|||++|+....+
T Consensus       351 ~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~----~~~~~~~~~~spdg~~l~~~~~~  421 (706)
T 2z3z_A          351 TKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT----PESGMHRTQLSPDGSAIIDIFQS  421 (706)
T ss_dssp             CCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC----CSSSEEEEEECTTSSEEEEEEEC
T ss_pred             CCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc----CCCceEEEEECCCCCEEEEEecC
Confidence            556666776 799999988766554 44    67777877765 33443    55678999999999988876544

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.94  E-value=1e-24  Score=177.86  Aligned_cols=234  Identities=8%  Similarity=0.089  Sum_probs=163.6

Q ss_pred             CCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCe----------eeee-----eeeeeeceEEEEEeccCCeEE----E
Q 023822           33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT----------CLKT-----INSKKYGVDLVCFTSHPTTVI----Y   93 (276)
Q Consensus        33 h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~----------~~~~-----~~~~~~~v~~~~~~~~~~~l~----~   93 (276)
                      +...++.+++++++.++++++.|+ +++|+.....          ....     ...+...|.+++|+|++++|+    +
T Consensus        35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s  113 (434)
T 2oit_A           35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS  113 (434)
T ss_dssp             CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred             CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence            344689999999999999999887 8998764211          0110     112345799999999999999    5


Q ss_pred             eccCCCCCceEEEEccCC--------ce---eeeecccCcceEEEEeccC-CCEEEEeeCCCeEEEEeccCceeeeeE--
Q 023822           94 SSKNGWDESLRLLSLHDN--------KY---LRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLL--  159 (276)
Q Consensus        94 ~~~~~~d~~i~~~d~~~~--------~~---~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~--  159 (276)
                      ++.   |+.|++||+.++        ++   ...+.+|...|.+++|+|+ +++|++++.||+|++||++++......  
T Consensus       114 gs~---d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~  190 (434)
T 2oit_A          114 SEY---GSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLP  190 (434)
T ss_dssp             TTT---EEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEEC
T ss_pred             cCC---CceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccC
Confidence            555   999999998765        22   3456679999999999998 789999999999999999988665444  


Q ss_pred             eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeec-----CCCCCceEEEECCCCcEEEEe-ecCC----
Q 023822          160 RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVG-----GDISDANVVKFSNDGRLMLLT-TMEG----  228 (276)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~-~~dg----  228 (276)
                      +...+.+++|+|++++|++++ |+.|++||++ ++.  .......     .|...+.+++|++++.++++. +.+|    
T Consensus       191 ~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~--~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~  267 (434)
T 2oit_A          191 STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQE--KKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLET  267 (434)
T ss_dssp             GGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCE--EEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSS
T ss_pred             CCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccc--cccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCC
Confidence            345788999999998888887 8999999998 221  1111111     123478999999998877553 3443    


Q ss_pred             --cEEEEECCCCc-----EEEEeecC----CCCCCceEEEEECCCCcEEEEecCCC
Q 023822          229 --HIHVLDSFRGT-----LLSTYNVK----PVSRNSTLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       229 --~i~i~d~~~~~-----~~~~~~~~----~~~~~~v~~~~~s~~g~~l~~~~~dg  273 (276)
                        .+++|++...+     ....+...    .+...+-..+.+.++.+++++++...
T Consensus       268 ~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s  323 (434)
T 2oit_A          268 SPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAAS  323 (434)
T ss_dssp             CCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTC
T ss_pred             CCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCC
Confidence              38999997652     11221110    01222333344447777777766543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.93  E-value=6.5e-25  Score=190.89  Aligned_cols=224  Identities=8%  Similarity=0.071  Sum_probs=168.8

Q ss_pred             cEEEEEEcCCCCEEEEeecCCeEEEEEccCCe--eeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCce
Q 023822           36 RISSMDFHKSSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY  113 (276)
Q Consensus        36 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~  113 (276)
                      .|.+++|+|||++|++++. +.|++||+.+++  ....+..+...+..++|+|++++|+++.    ++.|++||+.+++.
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~----~~~i~~~d~~~g~~  184 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR----GRNLWVIDLASGRQ  184 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE----TTEEEEEETTTTEE
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe----CCcEEEEecCCCCE
Confidence            4889999999999999886 899999998873  4455666777899999999999999987    67999999998876


Q ss_pred             eeeecccCcc----------------eEEEEeccCCCEEEEeeCCC---------------------------------e
Q 023822          114 LRYFKGHHDR----------------VVSLSLCSSKDCFISGSLDR---------------------------------T  144 (276)
Q Consensus       114 ~~~~~~~~~~----------------i~~~~~~~~~~~l~~~~~d~---------------------------------~  144 (276)
                      ......+...                +..++|+|||++|++++.|+                                 .
T Consensus       185 ~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~  264 (741)
T 2ecf_A          185 MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK  264 (741)
T ss_dssp             EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred             EEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence            6554433332                47899999999999988765                                 8


Q ss_pred             EEEEeccC-ceeeeeE----eecCCCeeEecCCCcEEEEee------CCeEEEEecccCCCCCeeeeeecCCC-C---Cc
Q 023822          145 VLLWDQRA-EKCQGLL----RVQGRPAAAYDDQGLVFAVAF------GGYIRMFDARKYEKGPFDIFSVGGDI-S---DA  209 (276)
Q Consensus       145 i~iwd~~~-~~~~~~~----~~~~~~~~~~~~~~~~l~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~~-~---~i  209 (276)
                      |++||+.+ ++.....    +...+..++| |+++.|+...      +..|++||+.+++..    .....+. .   .+
T Consensus       265 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~----~~~~~~~~~~~~~~  339 (741)
T 2ecf_A          265 LGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQR----VLAHETSPTWVPLH  339 (741)
T ss_dssp             EEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEE----EEEEEECSSCCCCC
T ss_pred             EEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceE----EEEEcCCCCcCCcC
Confidence            89999988 7654433    1233568899 9998877654      367999999876531    1111121 1   45


Q ss_pred             eEEEECCCCcEEEEeecCCcEEEEECC-CCcEEEEeecCCCCCCceEEE-EECCCCcEEEE-ecCCC
Q 023822          210 NVVKFSNDGRLMLLTTMEGHIHVLDSF-RGTLLSTYNVKPVSRNSTLEA-SFSPEGMFVIS-GRVSP  273 (276)
Q Consensus       210 ~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~v~~~-~~s~~g~~l~~-~~~dg  273 (276)
                      ..++|+|+|+++++++.||.++||.+. +++ ...+.   .+...+..+ .|+|+|+.|+. ++.++
T Consensus       340 ~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~---~~~~~v~~~~~~s~dg~~l~~~~~~~~  402 (741)
T 2ecf_A          340 NSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALT---HGNWSVDELLAVDEKAGLAYFRAGIES  402 (741)
T ss_dssp             SCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESC---CSSSCEEEEEEEETTTTEEEEEECSSC
T ss_pred             CceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeee---ecceEEEeEeEEeCCCCEEEEEEeCCC
Confidence            689999999988999999988888765 445 56665   466778887 59999987754 44443

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.93  E-value=1.5e-24  Score=187.61  Aligned_cols=226  Identities=12%  Similarity=0.059  Sum_probs=169.1

Q ss_pred             CcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccC----
Q 023822           35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD----  110 (276)
Q Consensus        35 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~----  110 (276)
                      ..|.+++|+|| +.++.+ .++.+++||+.+++... +..+...+..++|+|+++.++++.    ++.|++||+.+    
T Consensus        82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~~----~~~i~v~~~~~~~~~  154 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYVR----NHNLYIARGGKLGEG  154 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEEE----TTEEEEEECBCTTSC
T ss_pred             cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEEE----CCeEEEEecCccccc
Confidence            56999999999 666655 45999999998887644 344556788999999999999964    89999999998    


Q ss_pred             -CceeeeecccCcc--------------eEEEEeccCCCEEEEee---------------------------------CC
Q 023822          111 -NKYLRYFKGHHDR--------------VVSLSLCSSKDCFISGS---------------------------------LD  142 (276)
Q Consensus       111 -~~~~~~~~~~~~~--------------i~~~~~~~~~~~l~~~~---------------------------------~d  142 (276)
                       ++.......+...              +.+++|+|||++|++++                                 .+
T Consensus       155 ~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~  234 (706)
T 2z3z_A          155 MSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHH  234 (706)
T ss_dssp             CCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCE
T ss_pred             CCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCe
Confidence             7766544433332              48899999999999987                                 44


Q ss_pred             CeEEEEeccCceeeeeEee----cCCCeeEecCCCcEEEEee-CC-----eEEEEecccCCCCCeeeeeecCCC---CCc
Q 023822          143 RTVLLWDQRAEKCQGLLRV----QGRPAAAYDDQGLVFAVAF-GG-----YIRMFDARKYEKGPFDIFSVGGDI---SDA  209 (276)
Q Consensus       143 ~~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~-d~-----~i~~~d~~~~~~~~~~~~~~~~~~---~~i  209 (276)
                      ..|++||+.+++.......    ..+..++|+|+++.++.+. ++     .|++||+.+++.  ........+.   ..+
T Consensus       235 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~--~~~~~~~~~~~~~~~~  312 (706)
T 2z3z_A          235 VTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF--VRTLFVETDKHYVEPL  312 (706)
T ss_dssp             EEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCE--EEEEEEEECSSCCCCC
T ss_pred             eEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCce--eeEEEEccCCCeECcc
Confidence            6799999998876544321    2355899999999777655 54     899999987621  1111111122   234


Q ss_pred             eEEEECC--CCcEEEEeecCCcEEEEECC-CCcEEEEeecCCCCCCceEE-EEECCCCcEEEEecCC
Q 023822          210 NVVKFSN--DGRLMLLTTMEGHIHVLDSF-RGTLLSTYNVKPVSRNSTLE-ASFSPEGMFVISGRVS  272 (276)
Q Consensus       210 ~~~~~~~--~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~v~~-~~~s~~g~~l~~~~~d  272 (276)
                      ..++|+|  +|+++++++.|+.++||++. +++.+..+.   .+...+.. ++|+|+|+.|+.++.+
T Consensus       313 ~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~---~~~~~v~~~~~~spdg~~l~~~~~~  376 (706)
T 2z3z_A          313 HPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT---KGEWEVTNFAGFDPKGTRLYFESTE  376 (706)
T ss_dssp             SCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC---CSSSCEEEEEEECTTSSEEEEEESS
T ss_pred             CCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC---CCCeEEEeeeEEcCCCCEEEEEecC
Confidence            6789999  99999999999999999876 667777776   46667776 7999999887665544

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.93  E-value=3.2e-23  Score=165.47  Aligned_cols=231  Identities=8%  Similarity=0.087  Sum_probs=159.4

Q ss_pred             CCCcEEEEEEcCCCCEEEEeecC----CeEEEEEccC--Cee--eeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceE
Q 023822           33 YNGRISSMDFHKSSSYLVTASDD----ESIRLYDVTA--ATC--LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (276)
Q Consensus        33 h~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~  104 (276)
                      +...+..++|+|++++|++++.+    +.|.+|++..  ++.  +.....+......+++  ++++++++...  ++.|.
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~--~~~v~  123 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYS--GGSIT  123 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETT--TTEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECC--CCEEE
Confidence            66778889999999999998876    7999999875  443  2333333445667777  88888877642  88999


Q ss_pred             EEEccCCceeeeec--------------ccCcceEEEEeccCCCEEEEee-CCCeEEEEeccCcee------e------e
Q 023822          105 LLSLHDNKYLRYFK--------------GHHDRVVSLSLCSSKDCFISGS-LDRTVLLWDQRAEKC------Q------G  157 (276)
Q Consensus       105 ~~d~~~~~~~~~~~--------------~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~------~------~  157 (276)
                      +|++.....+..+.              .+...+.+++|+|+++++++++ .++.|.+|++.....      +      .
T Consensus       124 ~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~  203 (361)
T 3scy_A          124 VFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPE  203 (361)
T ss_dssp             EEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEE
T ss_pred             EEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccc
Confidence            99997543322111              1123457899999999666555 488999999875431      1      1


Q ss_pred             eE---eecCCCeeEecCCCcEEEEee--CCeEEEEecccCCCCCeeee-eecCCCCCceEEEECCCCcEEEEeecC--Cc
Q 023822          158 LL---RVQGRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDIF-SVGGDISDANVVKFSNDGRLMLLTTME--GH  229 (276)
Q Consensus       158 ~~---~~~~~~~~~~~~~~~~l~~~~--d~~i~~~d~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~  229 (276)
                      ..   .......++|+|++++++++.  ++.|.+||+.++........ ....+...+..++|+|+|++|+++..+  +.
T Consensus       204 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~  283 (361)
T 3scy_A          204 AFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADG  283 (361)
T ss_dssp             EEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCE
T ss_pred             ceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCE
Confidence            11   223355899999998766655  79999999985432111111 122233456799999999998776654  89


Q ss_pred             EEEEECC--CCc--EEEEeecCCCCCCceEEEEECCCCcEEEEecC
Q 023822          230 IHVLDSF--RGT--LLSTYNVKPVSRNSTLEASFSPEGMFVISGRV  271 (276)
Q Consensus       230 i~i~d~~--~~~--~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  271 (276)
                      |.+|++.  +++  .+..+.   . ...+..++|+|||++|++++.
T Consensus       284 i~v~~~~~~~g~~~~~~~~~---~-g~~~~~~~~spdg~~l~~~~~  325 (361)
T 3scy_A          284 VAIFKVDETNGTLTKVGYQL---T-GIHPRNFIITPNGKYLLVACR  325 (361)
T ss_dssp             EEEEEECTTTCCEEEEEEEE---C-SSCCCEEEECTTSCEEEEEET
T ss_pred             EEEEEEcCCCCcEEEeeEec---C-CCCCceEEECCCCCEEEEEEC
Confidence            9999985  455  333343   2 457789999999999888874

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.93  E-value=4.3e-24  Score=191.95  Aligned_cols=229  Identities=13%  Similarity=0.096  Sum_probs=180.9

Q ss_pred             eeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeee-----------eeeceEEEEEe-ccCCeEEEecc
Q 023822           29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS-----------KKYGVDLVCFT-SHPTTVIYSSK   96 (276)
Q Consensus        29 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~~l~~~~~   96 (276)
                      .+..|. .+..++|+|+|+.|+.+ .++.|++|++...+ +..+..           +...+..++|+ |+++.++++. 
T Consensus       240 ~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-  315 (1045)
T 1k32_A          240 KHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-  315 (1045)
T ss_dssp             ECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-
T ss_pred             EecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-
Confidence            344444 46678999999999887 58999999985443 334443           34468999999 9999999987 


Q ss_pred             CCCCCceEEEEccCCceeeeecccCc-ceEEEEeccCCCEEEEeeCCCeEE-EEeccCceeeeeE-eecCCCeeEecCCC
Q 023822           97 NGWDESLRLLSLHDNKYLRYFKGHHD-RVVSLSLCSSKDCFISGSLDRTVL-LWDQRAEKCQGLL-RVQGRPAAAYDDQG  173 (276)
Q Consensus        97 ~~~d~~i~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~i~-iwd~~~~~~~~~~-~~~~~~~~~~~~~~  173 (276)
                         ++.|.+|++.+++.. .+..|.. .+..++|+ +++.|++++.++.+. +||+..++..... +...+..++|+|++
T Consensus       316 ---~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG  390 (1045)
T 1k32_A          316 ---RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNG  390 (1045)
T ss_dssp             ---TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTS
T ss_pred             ---cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCC
Confidence               789999999877654 3566777 89999999 999999999888898 9999877654333 22345689999999


Q ss_pred             cEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCC----------cEEEEECCCCcEEE
Q 023822          174 LVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG----------HIHVLDSFRGTLLS  242 (276)
Q Consensus       174 ~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----------~i~i~d~~~~~~~~  242 (276)
                      +.++.+. ++.|++||+.+++.    ......|...+..++|+|||++|++++.++          .|++||+.+++ +.
T Consensus       391 ~~la~~~~~~~v~~~d~~tg~~----~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~  465 (1045)
T 1k32_A          391 KFAVVANDRFEIMTVDLETGKP----TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IF  465 (1045)
T ss_dssp             SEEEEEETTSEEEEEETTTCCE----EEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EE
T ss_pred             CEEEEECCCCeEEEEECCCCce----EEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EE
Confidence            9888777 78999999987653    333346777889999999999999887654          89999999887 45


Q ss_pred             EeecCCCCCCceEEEEECCCCcEEEEecCCCC
Q 023822          243 TYNVKPVSRNSTLEASFSPEGMFVISGRVSPF  274 (276)
Q Consensus       243 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~  274 (276)
                      .+.   .+...+..++|+|||++|++++.++.
T Consensus       466 ~l~---~~~~~~~~~~~spdG~~l~~~s~~~~  494 (1045)
T 1k32_A          466 AAT---TENSHDYAPAFDADSKNLYYLSYRSL  494 (1045)
T ss_dssp             ECS---CSSSBEEEEEECTTSCEEEEEESCCC
T ss_pred             Eee---CCCcccCCceEcCCCCEEEEEecccC
Confidence            555   47778899999999999999887654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.93  E-value=3.1e-24  Score=186.18  Aligned_cols=237  Identities=8%  Similarity=0.055  Sum_probs=167.1

Q ss_pred             ccceeeccCCC---cEEEEEEcCCCCEEEEeecC---------CeEEEEEccCCeeeeeee---eeeeceEEEEEeccCC
Q 023822           25 EVGMSFRDYNG---RISSMDFHKSSSYLVTASDD---------ESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHPT   89 (276)
Q Consensus        25 ~~~~~~~~h~~---~v~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~   89 (276)
                      +....+.+|..   .|.+++|||||++|++++.+         +.+++||+.+++. ..+.   .+...+..++|+|+++
T Consensus        48 ~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~  126 (723)
T 1xfd_A           48 TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ  126 (723)
T ss_dssp             CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT
T ss_pred             cEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC
Confidence            33445556654   49999999999999998764         7888999998875 3332   3444588999999999


Q ss_pred             eEEEeccCCCCCceEEEEccCCceeeeecccCcce------------------EEEEeccCCCEEEEeeCCC--------
Q 023822           90 TVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRV------------------VSLSLCSSKDCFISGSLDR--------  143 (276)
Q Consensus        90 ~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i------------------~~~~~~~~~~~l~~~~~d~--------  143 (276)
                      .|++++    ++.|++||+.+++.......+...+                  .+++|+|||++|++++.|+        
T Consensus       127 ~la~~~----~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~  202 (723)
T 1xfd_A          127 QLIFIF----ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMEL  202 (723)
T ss_dssp             CEEEEE----TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred             EEEEEE----CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEe
Confidence            999988    6799999999888766555444333                  7899999999999887553        


Q ss_pred             --------------------------eEEEEeccCceeeeeEe--------ecCCCeeEecCCCcEEEEee-----CCeE
Q 023822          144 --------------------------TVLLWDQRAEKCQGLLR--------VQGRPAAAYDDQGLVFAVAF-----GGYI  184 (276)
Q Consensus       144 --------------------------~i~iwd~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~-----d~~i  184 (276)
                                                .|++||+.+++....+.        ...+..++|+|+|++++...     +..|
T Consensus       203 ~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i  282 (723)
T 1xfd_A          203 PTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSIL  282 (723)
T ss_dssp             CCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEE
T ss_pred             eccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEE
Confidence                                      79999999887544442        22345799999999886654     2579


Q ss_pred             EEEecccCCCCCeeeeeecCCCCCc----eEEEECCCCcEEEEe--ecCC------cEEEEE-CCCCcE--EEEeecCCC
Q 023822          185 RMFDARKYEKGPFDIFSVGGDISDA----NVVKFSNDGRLMLLT--TMEG------HIHVLD-SFRGTL--LSTYNVKPV  249 (276)
Q Consensus       185 ~~~d~~~~~~~~~~~~~~~~~~~~i----~~~~~~~~~~~l~~~--~~dg------~i~i~d-~~~~~~--~~~~~~~~~  249 (276)
                      ++||+.+++..  .... ..+...+    ..++|+|||+.|+..  ..++      .|.+|| ..+++.  ...+.   .
T Consensus       283 ~~~d~~~g~~~--~~~~-~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~---~  356 (723)
T 1xfd_A          283 TLCDATTGVCT--KKHE-DESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSIT---S  356 (723)
T ss_dssp             EEEETTTCCEE--EEEE-EECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSC---C
T ss_pred             EEEeCCCCcce--EEEE-eccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEee---c
Confidence            99999876531  1111 1222333    378999999977654  4566      577777 344441  44444   2


Q ss_pred             CCCceEE-EEECCCCcEEEEecCC
Q 023822          250 SRNSTLE-ASFSPEGMFVISGRVS  272 (276)
Q Consensus       250 ~~~~v~~-~~~s~~g~~l~~~~~d  272 (276)
                      ....+.. ++|+|||++|+..+.+
T Consensus       357 ~~~~~~~~~~~spdg~~l~~~~~~  380 (723)
T 1xfd_A          357 GDWDVTKILAYDEKGNKIYFLSTE  380 (723)
T ss_dssp             SSSCEEEEEEEETTTTEEEEEESS
T ss_pred             CCeEEEeeeEEcCCCCEEEEEEcC
Confidence            3344444 6999999998766554

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.92  E-value=1.8e-22  Score=159.54  Aligned_cols=229  Identities=9%  Similarity=0.101  Sum_probs=155.9

Q ss_pred             cceeeccCCCcEEEEEEcCCCCEEEEeec-CCeEEEEEcc---CCeeeeeeeeeeeceEEEEEeccCCeEEEec-cCCCC
Q 023822           26 VGMSFRDYNGRISSMDFHKSSSYLVTASD-DESIRLYDVT---AATCLKTINSKKYGVDLVCFTSHPTTVIYSS-KNGWD  100 (276)
Q Consensus        26 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~~d  100 (276)
                      ....+..+. .+..++|+|++++|++++. ++.|.+||+.   ..+....+..+ ..+.+++|+|++++++++. .   +
T Consensus        76 ~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~---~  150 (343)
T 1ri6_A           76 FAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALK---Q  150 (343)
T ss_dssp             EEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGG---G
T ss_pred             eccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCC---C
Confidence            334444443 7889999999998876664 8899999994   34444444433 3588999999999888877 5   8


Q ss_pred             CceEEEEccC-Cceee----eecc-cCcceEEEEeccCCCEEEEee-CCCeEEEEeccC--cee--eeeEeec-------
Q 023822          101 ESLRLLSLHD-NKYLR----YFKG-HHDRVVSLSLCSSKDCFISGS-LDRTVLLWDQRA--EKC--QGLLRVQ-------  162 (276)
Q Consensus       101 ~~i~~~d~~~-~~~~~----~~~~-~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~--~~~--~~~~~~~-------  162 (276)
                      +.|.+||+.+ ++...    .+.. ....+..++|+|+++++++++ .++.|.+||++.  ++.  .......       
T Consensus       151 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~  230 (343)
T 1ri6_A          151 DRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDT  230 (343)
T ss_dssp             TEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSC
T ss_pred             CEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcccccc
Confidence            9999999987 54432    2222 334688899999999765554 789999999954  322  2222111       


Q ss_pred             -CCCeeEecCCCcEEEEee--CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEee-cCCcEEEE--ECC
Q 023822          163 -GRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT-MEGHIHVL--DSF  236 (276)
Q Consensus       163 -~~~~~~~~~~~~~l~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~--d~~  236 (276)
                       .+..++|+|+++.++++.  ++.|.+||+...............+. .+..++|+|+|++|++++ .++.|.+|  |..
T Consensus       231 ~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~  309 (343)
T 1ri6_A          231 RWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGE  309 (343)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEETT
T ss_pred             CCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC-ccceEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence             122599999997766444  79999999984221112222333333 388999999999888887 67999999  444


Q ss_pred             CCcE--EEEeecCCCCCCceEEEEECCCCc
Q 023822          237 RGTL--LSTYNVKPVSRNSTLEASFSPEGM  264 (276)
Q Consensus       237 ~~~~--~~~~~~~~~~~~~v~~~~~s~~g~  264 (276)
                      +++.  +..+.    ......+++|.|+.+
T Consensus       310 ~g~~~~~~~~~----~g~~p~~i~~~~~~~  335 (343)
T 1ri6_A          310 QGLLHEKGRYA----VGQGPMWVVVNAHEG  335 (343)
T ss_dssp             TTEEEEEEEEE----CSSSCCEEEEEEEC-
T ss_pred             CceeeEccccc----cCCCCeeEEEEcccC
Confidence            6644  33343    234567788887654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.92  E-value=4.9e-23  Score=164.66  Aligned_cols=239  Identities=9%  Similarity=0.035  Sum_probs=163.2

Q ss_pred             CCCcEEEEEEcCCCCEEEEeecCCeEEEEEcc-CCeeeeeeeee-eeceEEEEEeccCCe--EEEec-------------
Q 023822           33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVT-AATCLKTINSK-KYGVDLVCFTSHPTT--VIYSS-------------   95 (276)
Q Consensus        33 h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~--l~~~~-------------   95 (276)
                      +...+..++|+|++++|++++.+ .|.+|++. +++........ .+.+..++|+|++++  ++++.             
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  116 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence            34568899999999999999888 99999997 77765433211 123566899999995  34442             


Q ss_pred             cCCCCCceEEEEcc-CCceeeeec----ccCcceEEEEeccCCCEEEEeeC-CCeEEEEecc-Cceeee--eEe----ec
Q 023822           96 KNGWDESLRLLSLH-DNKYLRYFK----GHHDRVVSLSLCSSKDCFISGSL-DRTVLLWDQR-AEKCQG--LLR----VQ  162 (276)
Q Consensus        96 ~~~~d~~i~~~d~~-~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~-d~~i~iwd~~-~~~~~~--~~~----~~  162 (276)
                      .   ++.+.+|++. .++....+.    .+...+.+++|+|+|++++++.. ++.|++||+. +++...  .+.    ..
T Consensus       117 ~---~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~  193 (365)
T 1jof_A          117 F---AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGD  193 (365)
T ss_dssp             S---CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTC
T ss_pred             C---CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCC
Confidence            3   8899999997 455544333    24567899999999998887664 6799999998 665432  222    23


Q ss_pred             CCCeeEecCCCcEEEEee--CCeEEEEeccc--CCCCC-ee-eeeecC----CCC------CceEEE-ECCCCcEEEEee
Q 023822          163 GRPAAAYDDQGLVFAVAF--GGYIRMFDARK--YEKGP-FD-IFSVGG----DIS------DANVVK-FSNDGRLMLLTT  225 (276)
Q Consensus       163 ~~~~~~~~~~~~~l~~~~--d~~i~~~d~~~--~~~~~-~~-~~~~~~----~~~------~i~~~~-~~~~~~~l~~~~  225 (276)
                      .+..++|+|++++++++.  ++.|.+|++..  ++... .. +..+..    +..      .+..++ |+|+|++|++++
T Consensus       194 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~  273 (365)
T 1jof_A          194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS  273 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred             CCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEEC
Confidence            456899999998877665  68999998753  22100 00 111211    121      478899 999999988776


Q ss_pred             cC-C-----cEEEEECC-CCcEEEEeecCCCCCCceEEEEECC---CCcEEEEecCC-CCC
Q 023822          226 ME-G-----HIHVLDSF-RGTLLSTYNVKPVSRNSTLEASFSP---EGMFVISGRVS-PFS  275 (276)
Q Consensus       226 ~d-g-----~i~i~d~~-~~~~~~~~~~~~~~~~~v~~~~~s~---~g~~l~~~~~d-g~v  275 (276)
                      .+ +     .|.+|++. +++..........+...+..++|+|   ||++|++++.+ +.|
T Consensus       274 ~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v  334 (365)
T 1jof_A          274 RANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWL  334 (365)
T ss_dssp             EESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEE
T ss_pred             CCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeE
Confidence            43 2     89999986 6665432110002344566789999   89999998865 543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.92  E-value=2.1e-23  Score=170.11  Aligned_cols=200  Identities=13%  Similarity=0.072  Sum_probs=147.9

Q ss_pred             cCCCcEEEEEEcCCCCEEE----EeecCCeEEEEEccCC--------ee---eeeeeeeeeceEEEEEecc-CCeEEEec
Q 023822           32 DYNGRISSMDFHKSSSYLV----TASDDESIRLYDVTAA--------TC---LKTINSKKYGVDLVCFTSH-PTTVIYSS   95 (276)
Q Consensus        32 ~h~~~v~~~~~~~~~~~l~----~~~~d~~i~iwd~~~~--------~~---~~~~~~~~~~v~~~~~~~~-~~~l~~~~   95 (276)
                      .|...|.+++|+|++++|+    +++.|+.|+|||+.++        +.   ...+.+|...|.+++|+|+ +..+++++
T Consensus        90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s  169 (434)
T 2oit_A           90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL  169 (434)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred             cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence            3567899999999999999    7889999999998765        22   3455668899999999998 78899898


Q ss_pred             cCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEee---------cCCCe
Q 023822           96 KNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV---------QGRPA  166 (276)
Q Consensus        96 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---------~~~~~  166 (276)
                      .   |+.|++||++++.......+|...|.+++|+|++++|++|+.||+|++||++ ++....+..         ..+.+
T Consensus       170 ~---Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~  245 (434)
T 2oit_A          170 A---DGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLD  245 (434)
T ss_dssp             T---TSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEE
T ss_pred             C---CCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEE
Confidence            8   9999999999987776677789999999999999999999999999999998 444443311         14568


Q ss_pred             eEecCCCcEEEEee--CC------eEEEEecccCCCC-Ceeeeeec-------CCCCCceEEEECCCCcEEEEeec-CCc
Q 023822          167 AAYDDQGLVFAVAF--GG------YIRMFDARKYEKG-PFDIFSVG-------GDISDANVVKFSNDGRLMLLTTM-EGH  229 (276)
Q Consensus       167 ~~~~~~~~~l~~~~--d~------~i~~~d~~~~~~~-~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~-dg~  229 (276)
                      +.|++++.++++..  +|      .+++|+++..+.. +.....+.       ....+...+.+-++.+++++++. .+.
T Consensus       246 v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~d  325 (434)
T 2oit_A          246 VLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTE  325 (434)
T ss_dssp             EEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSB
T ss_pred             EEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCc
Confidence            89999988886655  33      3899999875422 11111111       22223333444477777666553 455


Q ss_pred             EEEEEC
Q 023822          230 IHVLDS  235 (276)
Q Consensus       230 i~i~d~  235 (276)
                      |.++..
T Consensus       326 v~vl~~  331 (434)
T 2oit_A          326 VSILAR  331 (434)
T ss_dssp             CEEEEE
T ss_pred             eeEEEe
Confidence            666654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.92  E-value=2.1e-23  Score=187.44  Aligned_cols=229  Identities=11%  Similarity=0.073  Sum_probs=179.6

Q ss_pred             eeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccC-CeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEE
Q 023822           28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA-ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL  106 (276)
Q Consensus        28 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~  106 (276)
                      ..+.+|...+.++.|+++ .++++++.|+.+.||.+.. +.....+..+. .+...+|+|+++.++++.    ++.|++|
T Consensus       197 ~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~----~~~i~~~  270 (1045)
T 1k32_A          197 KKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK----GGSIYIF  270 (1045)
T ss_dssp             EEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE----TTEEEEE
T ss_pred             EECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe----CCEEEEe
Confidence            445789999999999998 6777888889999998753 44445555444 466779999999999885    8999999


Q ss_pred             EccCCceeeeecc-----------cCcceEEEEec-cCCCEEEEeeCCCeEEEEeccCceeeeeE-eec-CCCeeEecCC
Q 023822          107 SLHDNKYLRYFKG-----------HHDRVVSLSLC-SSKDCFISGSLDRTVLLWDQRAEKCQGLL-RVQ-GRPAAAYDDQ  172 (276)
Q Consensus       107 d~~~~~~~~~~~~-----------~~~~i~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~-~~~~~~~~~~  172 (276)
                      |+...+ +..+..           |...+.+++|+ |+|++|++++ ++.|.+|++..++..... +.. .+..++|+ +
T Consensus       271 d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-d  347 (1045)
T 1k32_A          271 NPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-T  347 (1045)
T ss_dssp             CTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-S
T ss_pred             cCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-C
Confidence            995443 334443           34478999999 9999998888 789999999887654432 222 45678999 9


Q ss_pred             CcEEEEee-CCeEE-EEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCC
Q 023822          173 GLVFAVAF-GGYIR-MFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS  250 (276)
Q Consensus       173 ~~~l~~~~-d~~i~-~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  250 (276)
                      ++.++.+. +..+. +||+...+     ...+..+...+..++|+|+|++|++++.++.|++||+.+++......   +|
T Consensus       348 g~~l~~~s~~~~l~~~~d~~~~~-----~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~---~~  419 (1045)
T 1k32_A          348 KVAFIHGTREGDFLGIYDYRTGK-----AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER---SR  419 (1045)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCC-----EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---CS
T ss_pred             CCeEEEEECCCceEEEEECCCCC-----ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEecc---CC
Confidence            88777766 57777 88887643     22333566789999999999999999999999999999999888776   57


Q ss_pred             CCceEEEEECCCCcEEEEecCCC
Q 023822          251 RNSTLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       251 ~~~v~~~~~s~~g~~l~~~~~dg  273 (276)
                      ...+..++|+|||++|++++.++
T Consensus       420 ~~~v~~~~~SpDG~~la~~~~~~  442 (1045)
T 1k32_A          420 EAMITDFTISDNSRFIAYGFPLK  442 (1045)
T ss_dssp             SSCCCCEEECTTSCEEEEEEEEC
T ss_pred             CCCccceEECCCCCeEEEEecCc
Confidence            88899999999999998887643

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.91  E-value=2.9e-22  Score=158.02  Aligned_cols=213  Identities=10%  Similarity=0.048  Sum_probs=160.6

Q ss_pred             CEEEEeecCCeEEEEEccCCeeeeeeeeeee--ceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeeccc----
Q 023822           47 SYLVTASDDESIRLYDVTAATCLKTINSKKY--GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH----  120 (276)
Q Consensus        47 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~----  120 (276)
                      ++|++++.++.|++||+.+++.+..+.....  .+..++|+|+++.++++...  ++.|.+||+.+++.+..+...    
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~--~~~v~~~d~~~~~~~~~~~~~~~~~   79 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNK--SESLVKIDLVTGETLGRIDLSTPEE   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETT--TTEEEEEETTTCCEEEEEECCBTTE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCC--CCeEEEEECCCCCeEeeEEcCCccc
Confidence            4788999999999999999998887764332  47899999999887665542  789999999999887766531    


Q ss_pred             -CcceEEEEeccCCCEEEEee------------CCCeEEEEeccCceeeeeEe-ecCCCeeEecCCCcEEEEeeCCeEEE
Q 023822          121 -HDRVVSLSLCSSKDCFISGS------------LDRTVLLWDQRAEKCQGLLR-VQGRPAAAYDDQGLVFAVAFGGYIRM  186 (276)
Q Consensus       121 -~~~i~~~~~~~~~~~l~~~~------------~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~d~~i~~  186 (276)
                       ...+..++|+|++++++++.            .++.|.+||+.+++....+. ...+..++|+|+++.++++ ++.|++
T Consensus        80 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~i~~  158 (337)
T 1pby_B           80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL-GRDLHV  158 (337)
T ss_dssp             EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE-SSSEEE
T ss_pred             ccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe-CCeEEE
Confidence             22577899999999888886            57999999999988777664 3456789999999877776 789999


Q ss_pred             EecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCC------------------------cEEEEECCCCcEEE
Q 023822          187 FDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG------------------------HIHVLDSFRGTLLS  242 (276)
Q Consensus       187 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------------------------~i~i~d~~~~~~~~  242 (276)
                      ||+.+++.    ...+..+. ....+.|+|+|++++..+.++                        .|.+||+.+++.. 
T Consensus       159 ~d~~~~~~----~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-  232 (337)
T 1pby_B          159 MDPEAGTL----VEDKPIQS-WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-  232 (337)
T ss_dssp             EETTTTEE----EEEECSTT-TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-
T ss_pred             EECCCCcE----eeeeeccc-cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-
Confidence            99987543    22222222 111237899998776654332                        4689999998875 


Q ss_pred             EeecCCCCCCceEEEEECCCCcEEEEe
Q 023822          243 TYNVKPVSRNSTLEASFSPEGMFVISG  269 (276)
Q Consensus       243 ~~~~~~~~~~~v~~~~~s~~g~~l~~~  269 (276)
                      .+... .+...+..++|+|||++|+++
T Consensus       233 ~~~~~-~~~~~~~~~~~s~dg~~l~~~  258 (337)
T 1pby_B          233 MREVR-IMDVFYFSTAVNPAKTRAFGA  258 (337)
T ss_dssp             EEEEE-ECSSCEEEEEECTTSSEEEEE
T ss_pred             EeecC-CCCCceeeEEECCCCCEEEEe
Confidence            33322 355678899999999998887

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.91  E-value=2.2e-23  Score=180.70  Aligned_cols=230  Identities=11%  Similarity=0.096  Sum_probs=164.1

Q ss_pred             EEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeee---ceEEEEEeccCCeEEEeccC------CCCCceEEEEcc
Q 023822           39 SMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKY---GVDLVCFTSHPTTVIYSSKN------GWDESLRLLSLH  109 (276)
Q Consensus        39 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~~------~~d~~i~~~d~~  109 (276)
                      .++|+|+++++++ +.|++|++||+.+++....+..+..   .+..++|+||+++|++++..      +.++.|++||+.
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            7899999965555 4699999999999988777765544   38999999999999988641      014899999999


Q ss_pred             CCcee--eeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe-ec-------------------CCCee
Q 023822          110 DNKYL--RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR-VQ-------------------GRPAA  167 (276)
Q Consensus       110 ~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~-------------------~~~~~  167 (276)
                      +++.+  ..+   ...+..++|+|||+.|+.+. ++.|++||+.+++...... ..                   ....+
T Consensus        99 ~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~  174 (719)
T 1z68_A           99 NGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYAL  174 (719)
T ss_dssp             TTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCE
T ss_pred             CCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccE
Confidence            88763  222   35688999999999999886 7899999998877654331 11                   11479


Q ss_pred             EecCCCcEEEEee-C-C---------------------------------eEEEEecccCCCC-Ceee---eeecCCCCC
Q 023822          168 AYDDQGLVFAVAF-G-G---------------------------------YIRMFDARKYEKG-PFDI---FSVGGDISD  208 (276)
Q Consensus       168 ~~~~~~~~l~~~~-d-~---------------------------------~i~~~d~~~~~~~-~~~~---~~~~~~~~~  208 (276)
                      +|+|||+.|+.+. | +                                 .|++||+.+++.. ...+   ..+..+...
T Consensus       175 ~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~  254 (719)
T 1z68_A          175 WWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYY  254 (719)
T ss_dssp             EECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEE
T ss_pred             EECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcce
Confidence            9999999888776 3 1                                 7889998765420 0011   112346667


Q ss_pred             ceEEEECCCCcEEEEeecC----CcEEEEE----CCCCcEEEEee-cCCCCCCceE-----EEEECCCCcEEEE--ecCC
Q 023822          209 ANVVKFSNDGRLMLLTTME----GHIHVLD----SFRGTLLSTYN-VKPVSRNSTL-----EASFSPEGMFVIS--GRVS  272 (276)
Q Consensus       209 i~~~~~~~~~~~l~~~~~d----g~i~i~d----~~~~~~~~~~~-~~~~~~~~v~-----~~~~s~~g~~l~~--~~~d  272 (276)
                      +..++|+||++++++....    ..|.+||    ..+++....+. ....+...+.     .++|+|||+.|+.  +..+
T Consensus       255 ~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  334 (719)
T 1z68_A          255 FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKD  334 (719)
T ss_dssp             EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTT
T ss_pred             EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccC
Confidence            8999999999877764432    2488899    87777655441 0003556665     7899999986544  4444


Q ss_pred             C
Q 023822          273 P  273 (276)
Q Consensus       273 g  273 (276)
                      |
T Consensus       335 g  335 (719)
T 1z68_A          335 G  335 (719)
T ss_dssp             S
T ss_pred             C
Confidence            4

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.90  E-value=3e-22  Score=174.05  Aligned_cols=224  Identities=8%  Similarity=0.054  Sum_probs=161.9

Q ss_pred             cEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeec-----eEEEEEeccCCeEEEeccCCCC---------C
Q 023822           36 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYG-----VDLVCFTSHPTTVIYSSKNGWD---------E  101 (276)
Q Consensus        36 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~~~~d---------~  101 (276)
                      ...+++|+||+++++++  |++|++||+.++++...+..+...     ...+.|+||++++++++.   +         +
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~---~~~~~r~~~~~   92 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYN---YVKQWRHSYTA   92 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEE---EEECSSSCEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEEC---CeeeEEEccce
Confidence            45689999999988886  899999999999887777666432     234889999999999885   4         6


Q ss_pred             ceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe-e-------------------
Q 023822          102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR-V-------------------  161 (276)
Q Consensus       102 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~-------------------  161 (276)
                      .+.+||+.+++.. .+..|...+...+|+|||+.|+.+. ++.|++||+.+++..+... .                   
T Consensus        93 ~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~  170 (740)
T 4a5s_A           93 SYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF  170 (740)
T ss_dssp             EEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred             EEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence            6789999998754 4666788899999999999998885 7899999998876544321 1                   


Q ss_pred             cCCCeeEecCCCcEEEEee--CC-----------------------------------eEEEEeccc---CCCCCeeeee
Q 023822          162 QGRPAAAYDDQGLVFAVAF--GG-----------------------------------YIRMFDARK---YEKGPFDIFS  201 (276)
Q Consensus       162 ~~~~~~~~~~~~~~l~~~~--d~-----------------------------------~i~~~d~~~---~~~~~~~~~~  201 (276)
                      .....+.|+|||+.|+...  +.                                   .|++||+.+   ++...  ...
T Consensus       171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~--~~~  248 (740)
T 4a5s_A          171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNAT--SIQ  248 (740)
T ss_dssp             SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCC--EEE
T ss_pred             CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcce--EEE
Confidence            1123488999999887764  22                                   477778776   42111  112


Q ss_pred             ec------CCCCCceEEEECCCCcEEEEeec----CCcEEEEECCCCc----EEE--Ee-ecCCCCCCceE-----EEEE
Q 023822          202 VG------GDISDANVVKFSNDGRLMLLTTM----EGHIHVLDSFRGT----LLS--TY-NVKPVSRNSTL-----EASF  259 (276)
Q Consensus       202 ~~------~~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~----~~~--~~-~~~~~~~~~v~-----~~~~  259 (276)
                      +.      .+...+..++|+|||+.++....    +..|++||+.+++    +..  .+ ..  .+...+.     .++|
T Consensus       249 l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~--~~~~~v~~~~~~~p~f  326 (740)
T 4a5s_A          249 ITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEM--STTGWVGRFRPSEPHF  326 (740)
T ss_dssp             ECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEE--CSSSCSSSSSCCCCEE
T ss_pred             ecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeec--cCCceEccCcCCCceE
Confidence            22      25567889999999997665532    3479999999887    221  12 11  3444443     7899


Q ss_pred             CCCCcEEE-Eec
Q 023822          260 SPEGMFVI-SGR  270 (276)
Q Consensus       260 s~~g~~l~-~~~  270 (276)
                      +|||+.|+ ..+
T Consensus       327 spDG~~l~~~~s  338 (740)
T 4a5s_A          327 TLDGNSFYKIIS  338 (740)
T ss_dssp             CTTSSEEEEEEE
T ss_pred             cCCCCEEEEEEE
Confidence            99999876 554

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.90  E-value=1.5e-20  Score=149.24  Aligned_cols=214  Identities=8%  Similarity=0.059  Sum_probs=146.1

Q ss_pred             ccceeeccCCCcEEEEEEcCCCCEEEEee-cCCeEEEEEccC-C--eeeeeeeee---------eeceEEEEEeccCCeE
Q 023822           25 EVGMSFRDYNGRISSMDFHKSSSYLVTAS-DDESIRLYDVTA-A--TCLKTINSK---------KYGVDLVCFTSHPTTV   91 (276)
Q Consensus        25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~-~--~~~~~~~~~---------~~~v~~~~~~~~~~~l   91 (276)
                      +....+..+...+..++|+|++++|++++ .++.+.+|++.. +  +.+..+...         ...+.+++|+|+++.+
T Consensus        76 ~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~  155 (347)
T 3hfq_A           76 HKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLA  155 (347)
T ss_dssp             EEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEE
T ss_pred             EEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEE
Confidence            34444555777889999999999988887 789999999963 3  223332211         1247889999999944


Q ss_pred             EEeccCCCCCceEEEEcc-CCceee--eecc-cCcceEEEEeccCCCEEEE-eeCCCeEEEEeccC--ceeee--eEee-
Q 023822           92 IYSSKNGWDESLRLLSLH-DNKYLR--YFKG-HHDRVVSLSLCSSKDCFIS-GSLDRTVLLWDQRA--EKCQG--LLRV-  161 (276)
Q Consensus        92 ~~~~~~~~d~~i~~~d~~-~~~~~~--~~~~-~~~~i~~~~~~~~~~~l~~-~~~d~~i~iwd~~~--~~~~~--~~~~-  161 (276)
                      ++...   ++.|.+|++. +++...  .+.. ....+..++|+|+++++++ ...++.|.+|++..  ++...  .+.. 
T Consensus       156 v~~~~---~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~  232 (347)
T 3hfq_A          156 VIDLG---SDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTI  232 (347)
T ss_dssp             EEETT---TTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESS
T ss_pred             EEeCC---CCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeec
Confidence            44444   7899999998 454322  2222 2235778999999996555 56688999999884  44322  2211 


Q ss_pred             -------cCCCeeEecCCCcEEEEe-e-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecC-CcEE
Q 023822          162 -------QGRPAAAYDDQGLVFAVA-F-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME-GHIH  231 (276)
Q Consensus       162 -------~~~~~~~~~~~~~~l~~~-~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~  231 (276)
                             .....++|+|++++++++ . ++.|.+|++.... ..........+...+..++|+|+|++|++++.+ +.|.
T Consensus       233 ~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g-~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~  311 (347)
T 3hfq_A          233 PADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG-HLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNAT  311 (347)
T ss_dssp             CTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG-CEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEE
T ss_pred             CCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC-cEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEE
Confidence                   124469999999876444 4 7999999997422 112233344445568899999999988888754 8999


Q ss_pred             EE--ECCCCcEEE
Q 023822          232 VL--DSFRGTLLS  242 (276)
Q Consensus       232 i~--d~~~~~~~~  242 (276)
                      +|  |..++++..
T Consensus       312 v~~~d~~tg~l~~  324 (347)
T 3hfq_A          312 LYARDLTSGKLSL  324 (347)
T ss_dssp             EEEECTTTCCEEE
T ss_pred             EEEEeCCCCeEEe
Confidence            99  556677654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.90  E-value=2.4e-21  Score=153.59  Aligned_cols=209  Identities=11%  Similarity=-0.008  Sum_probs=155.3

Q ss_pred             ccceeeccCC-CcEEEEEEcCCCCEEE-EeecCCeEEEEEccCCeeeeeeeee------eeceEEEEEeccCCeEEEecc
Q 023822           25 EVGMSFRDYN-GRISSMDFHKSSSYLV-TASDDESIRLYDVTAATCLKTINSK------KYGVDLVCFTSHPTTVIYSSK   96 (276)
Q Consensus        25 ~~~~~~~~h~-~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~   96 (276)
                      +....+..+. ..+..++|+|++++++ ++..++.|.+||+.+++.+..+...      ...+..++|+|++++++++..
T Consensus        32 ~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  111 (349)
T 1jmx_B           32 TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVN  111 (349)
T ss_dssp             EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEE
T ss_pred             cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcc
Confidence            3334444332 2577899999998665 5557899999999999887776532      234789999999999999885


Q ss_pred             CCCC------------CceEEEEccCCcee---eeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEee
Q 023822           97 NGWD------------ESLRLLSLHDNKYL---RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV  161 (276)
Q Consensus        97 ~~~d------------~~i~~~d~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  161 (276)
                         +            +.|.+||+.+++..   ..+. +...+.+++|+|+++ +++++.  .|.+||+.+++....+..
T Consensus       112 ---~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~  184 (349)
T 1jmx_B          112 ---PTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPL  184 (349)
T ss_dssp             ---EEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECS
T ss_pred             ---cccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccc
Confidence               4            89999999885433   3333 444688999999999 555543  499999988876655422


Q ss_pred             c----------------------------------------------------------------------CCCeeEecC
Q 023822          162 Q----------------------------------------------------------------------GRPAAAYDD  171 (276)
Q Consensus       162 ~----------------------------------------------------------------------~~~~~~~~~  171 (276)
                      .                                                                      ....++++|
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  264 (349)
T 1jmx_B          185 RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSP  264 (349)
T ss_dssp             TTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECS
T ss_pred             cccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecC
Confidence            1                                                                      112456678


Q ss_pred             -CCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeec
Q 023822          172 -QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV  246 (276)
Q Consensus       172 -~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  246 (276)
                       ++++++++ ++.|.+||+.+++.    ...+. ....+.+++|+|+|++|++++.++.|++||..+++.+..+..
T Consensus       265 ~dg~~l~~~-~~~v~~~d~~~~~~----~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~  334 (349)
T 1jmx_B          265 KDPNQIYGV-LNRLAKYDLKQRKL----IKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL  334 (349)
T ss_dssp             SCTTEEEEE-ESEEEEEETTTTEE----EEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred             CCCCEEEEE-cCeEEEEECccCeE----EEEEc-CCCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeec
Confidence             99888888 89999999987542    22222 233578999999999888888899999999999999988873

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.90  E-value=3.1e-22  Score=169.54  Aligned_cols=224  Identities=11%  Similarity=0.084  Sum_probs=161.0

Q ss_pred             eeeccCC-CcEEEEEEcCCCCEEEEeec---CCeEEEEEccC---CeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCC
Q 023822           28 MSFRDYN-GRISSMDFHKSSSYLVTASD---DESIRLYDVTA---ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD  100 (276)
Q Consensus        28 ~~~~~h~-~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d  100 (276)
                      +.+..|. ..+..++|+|| +++++++.   +...++|.+..   +... .+.... .....+|+|+++.++..+..  +
T Consensus        57 ~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~--~  131 (582)
T 3o4h_A           57 VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGAT--E  131 (582)
T ss_dssp             EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEEC--S
T ss_pred             EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecC--C
Confidence            3444555 68999999999 77777765   45556655433   2222 332222 34466899998754443321  5


Q ss_pred             CceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCC----CeEEEEeccCceeeeeE-eecCCCeeEecCCCcE
Q 023822          101 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLD----RTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLV  175 (276)
Q Consensus       101 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~  175 (276)
                      +.+.+||+.+++...... +..  .+++|+|||+++++++.+    +.|++||+.+++..... +...+..++|+|||+.
T Consensus       132 ~~~~l~d~~~g~~~~l~~-~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~  208 (582)
T 3o4h_A          132 DRVALYALDGGGLRELAR-LPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKV  208 (582)
T ss_dssp             SCEEEEEEETTEEEEEEE-ESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCE
T ss_pred             CCceEEEccCCcEEEeec-CCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCE
Confidence            566699999887655444 333  789999999999988877    78999999888765333 3333568999999999


Q ss_pred             EEEee-CC--eEEEEecccCCCCCeeeeeecCCCCCceEEE--------ECCCCcEEEEeecCCcEEEEECCCCcEEEEe
Q 023822          176 FAVAF-GG--YIRMFDARKYEKGPFDIFSVGGDISDANVVK--------FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY  244 (276)
Q Consensus       176 l~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  244 (276)
                      |+.+. ++  .|++||+.+++.    . .+..+...+..++        |+|||.++++++.|+.+++|++  ++...  
T Consensus       209 l~~~~~~~~~~i~~~d~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~--  279 (582)
T 3o4h_A          209 TAGLETAREARLVTVDPRDGSV----E-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE--  279 (582)
T ss_dssp             EEEEECSSCEEEEEECTTTCCE----E-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC--
T ss_pred             EEEccCCCeeEEEEEcCCCCcE----E-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec--
Confidence            98665 67  899999987553    2 4455666676677        9999988899999999999999  66544  


Q ss_pred             ecCCCCCCceEEEEECCCCcEEEEecCCC
Q 023822          245 NVKPVSRNSTLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       245 ~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  273 (276)
                      .    ..+.+.+++|+ +|+++++++.+.
T Consensus       280 ~----~~~~v~~~~~s-dg~~l~~~s~~~  303 (582)
T 3o4h_A          280 A----PQGNHGRVVLW-RGKLVTSHTSLS  303 (582)
T ss_dssp             C----CSSEEEEEEEE-TTEEEEEEEETT
T ss_pred             c----CCCceEEEEec-CCEEEEEEcCCC
Confidence            1    34678999999 999998887764

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.90  E-value=1.8e-20  Score=147.66  Aligned_cols=236  Identities=11%  Similarity=0.108  Sum_probs=173.0

Q ss_pred             CCcEEEEEEcCCCCEEEEeecC------------------------CeEEEEEccCCeeeeeee-eeeeceEEEEEeccC
Q 023822           34 NGRISSMDFHKSSSYLVTASDD------------------------ESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSHP   88 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~~~~~d------------------------~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~   88 (276)
                      -+.+.+++++|+|+++++...+                        +.|.+||..+++.+..+. .+-.....+++++++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            4679999999999999888777                        479999998888776554 233468899999999


Q ss_pred             CeEEEeccCCCCCceEEEEccCCc-eeeee---------cccCcceEEEEecc-CCCEEEEee-CCCeEEEEeccCceee
Q 023822           89 TTVIYSSKNGWDESLRLLSLHDNK-YLRYF---------KGHHDRVVSLSLCS-SKDCFISGS-LDRTVLLWDQRAEKCQ  156 (276)
Q Consensus        89 ~~l~~~~~~~~d~~i~~~d~~~~~-~~~~~---------~~~~~~i~~~~~~~-~~~~l~~~~-~d~~i~iwd~~~~~~~  156 (276)
                      +.+++...   ++.|++||..... .+..+         ..+......++++| +++++++.+ .++.|++|| ..++.+
T Consensus       103 ~l~v~d~~---~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~  178 (329)
T 3fvz_A          103 NYWVTDVA---LHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFV  178 (329)
T ss_dssp             CEEEEETT---TTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEE
T ss_pred             CEEEEECC---CCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEE
Confidence            97776665   8999999986542 44444         23444688999999 788888776 689999999 455555


Q ss_pred             eeEee------------cCCCeeEecCC-CcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECC------
Q 023822          157 GLLRV------------QGRPAAAYDDQ-GLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN------  216 (276)
Q Consensus       157 ~~~~~------------~~~~~~~~~~~-~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~------  216 (276)
                      ..+..            .....++++|+ +.++++.. ++.|++||..+++.  ........+...+..++|+|      
T Consensus       179 ~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~--~~~~~~~~~~~~~~~~~~~pg~~~~~  256 (329)
T 3fvz_A          179 TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEF--VREIKHASFGRNVFAISYIPGFLFAV  256 (329)
T ss_dssp             EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE--EEEECCTTTTTCEEEEEEETTEEEEE
T ss_pred             EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcE--EEEEeccccCCCcceeeecCCEEEEe
Confidence            55521            12557999998 77777766 79999999985442  22222234556788899999      


Q ss_pred             CCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          217 DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       217 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      +|+.+++...+..|++|+..+++.+..+.....+...+..++++|+|.++++...++.|
T Consensus       257 ~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I  315 (329)
T 3fvz_A          257 NGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTV  315 (329)
T ss_dssp             ECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCE
T ss_pred             CCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEE
Confidence            33322223345589999999999998875323466779999999999888887777654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.89  E-value=1.1e-19  Score=145.06  Aligned_cols=229  Identities=10%  Similarity=0.088  Sum_probs=153.0

Q ss_pred             ccceeeccCCCcEEEEEEcCCCCEEEEee-cCCeEEEEEccCCeeeeeee---e-----------eeeceEEEEEeccCC
Q 023822           25 EVGMSFRDYNGRISSMDFHKSSSYLVTAS-DDESIRLYDVTAATCLKTIN---S-----------KKYGVDLVCFTSHPT   89 (276)
Q Consensus        25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~---~-----------~~~~v~~~~~~~~~~   89 (276)
                      +.+.....+......+++  ++++|++++ .++.|.+|++.....+..+.   .           +...+.+++|+|+++
T Consensus        90 ~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~  167 (361)
T 3scy_A           90 HLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGK  167 (361)
T ss_dssp             EEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSS
T ss_pred             EEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCC
Confidence            334444445566777888  788777766 67899999997543332211   1           122357899999999


Q ss_pred             eEEEeccCCCCCceEEEEccCCce------e-------eeecccCcceEEEEeccCCCEEEEee-CCCeEEEEeccCcee
Q 023822           90 TVIYSSKNGWDESLRLLSLHDNKY------L-------RYFKGHHDRVVSLSLCSSKDCFISGS-LDRTVLLWDQRAEKC  155 (276)
Q Consensus        90 ~l~~~~~~~~d~~i~~~d~~~~~~------~-------~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~  155 (276)
                      +++++...  ++.|.+|++.....      +       .....+...+..++|+|+++++++++ .++.|.+||+.+++.
T Consensus       168 ~l~~~~~~--~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~  245 (361)
T 3scy_A          168 YLLADDLG--TDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML  245 (361)
T ss_dssp             EEEEEETT--TTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE
T ss_pred             EEEEEeCC--CCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce
Confidence            88776642  78999999875431      1       11223445678999999999877776 689999999987654


Q ss_pred             eee--Eee-----cCCCeeEecCCCcEEEEee-C--CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEee
Q 023822          156 QGL--LRV-----QGRPAAAYDDQGLVFAVAF-G--GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT  225 (276)
Q Consensus       156 ~~~--~~~-----~~~~~~~~~~~~~~l~~~~-d--~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  225 (276)
                      ...  +..     .....++|+|++++|+++. +  +.|.+|++............... ...+..++|+|+|++|++++
T Consensus       246 ~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~  324 (361)
T 3scy_A          246 DEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVAC  324 (361)
T ss_dssp             EEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEE
T ss_pred             EEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEE
Confidence            322  211     1234899999999876655 4  78999999632221112222333 45688999999999988887


Q ss_pred             -cCCcEEEE--ECCCCcEEEEeecCCCCCCceEEEEEC
Q 023822          226 -MEGHIHVL--DSFRGTLLSTYNVKPVSRNSTLEASFS  260 (276)
Q Consensus       226 -~dg~i~i~--d~~~~~~~~~~~~~~~~~~~v~~~~~s  260 (276)
                       .++.|.+|  |..++++......  .+...+.++.|.
T Consensus       325 ~~~~~v~v~~~d~~~g~~~~~~~~--~~~~~p~~v~~~  360 (361)
T 3scy_A          325 RDTNVIQIFERDQATGLLTDIKKD--IKVDKPVCLKFV  360 (361)
T ss_dssp             TTTTEEEEEEECTTTCCEEECSCC--EECSSEEEEEEE
T ss_pred             CCCCCEEEEEEECCCCcEeeccee--eeCCCCeEEEEc
Confidence             57889996  5557776554321  134568888885

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.89  E-value=2.2e-19  Score=141.60  Aligned_cols=241  Identities=8%  Similarity=0.052  Sum_probs=169.0

Q ss_pred             ceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCC----Cc
Q 023822           27 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD----ES  102 (276)
Q Consensus        27 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d----~~  102 (276)
                      ...+..+...+.+++|+|++++++++..++.|.+||.++++.......+...+.+++++++++.+++...   +    +.
T Consensus        37 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~---~~~~~~~  113 (333)
T 2dg1_A           37 WLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLG---DFKSTGG  113 (333)
T ss_dssp             EEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECT---TSSSCCE
T ss_pred             eEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCC---CCCCCce
Confidence            3455667777899999999998888888999999999887765544345567999999999987776654   4    68


Q ss_pred             eEEEEccCCceeeeec--ccCcceEEEEeccCCCEEEEeeC------CCeEEEEeccCceeeeeE-eecCCCeeEecCCC
Q 023822          103 LRLLSLHDNKYLRYFK--GHHDRVVSLSLCSSKDCFISGSL------DRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQG  173 (276)
Q Consensus       103 i~~~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~  173 (276)
                      |.+||..+++....+.  .+...+.+++++|+++++++...      .+.|..+|..+++..... .......++++|++
T Consensus       114 i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg  193 (333)
T 2dg1_A          114 IFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDE  193 (333)
T ss_dssp             EEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTS
T ss_pred             EEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCC
Confidence            9999988876543332  23457899999999987776653      356777776655443332 23345678999999


Q ss_pred             cEEEEe-e-CCeEEEEecccCCCCCee-----eeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeec
Q 023822          174 LVFAVA-F-GGYIRMFDARKYEKGPFD-----IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV  246 (276)
Q Consensus       174 ~~l~~~-~-d~~i~~~d~~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  246 (276)
                      +.+..+ . ++.|.+||+.........     ......+ ..+..++++++|+++++...++.|.+||. +++.+..+..
T Consensus       194 ~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~  271 (333)
T 2dg1_A          194 KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILI  271 (333)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEEC
T ss_pred             CEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEc
Confidence            755444 3 689999998642111000     0111122 35778999999998887777889999997 5777777752


Q ss_pred             CC---CCCCceEEEEECCCCcEEEEecCC
Q 023822          247 KP---VSRNSTLEASFSPEGMFVISGRVS  272 (276)
Q Consensus       247 ~~---~~~~~v~~~~~s~~g~~l~~~~~d  272 (276)
                      ..   ++...+.+++|+||++.|+.++.+
T Consensus       272 ~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          272 PGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             TTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             CCCccccccCcceEEECCCCCEEEEEeCc
Confidence            11   111268899999998777766555

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.88  E-value=2e-21  Score=156.36  Aligned_cols=237  Identities=10%  Similarity=0.006  Sum_probs=163.3

Q ss_pred             ccceeeccCCCcEEE-----EEEcCCCCEEEEeec-CC--eEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEecc
Q 023822           25 EVGMSFRDYNGRISS-----MDFHKSSSYLVTASD-DE--SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK   96 (276)
Q Consensus        25 ~~~~~~~~h~~~v~~-----~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   96 (276)
                      .....+..|......     .+|+|||++|+.++. ++  .|.+||+.+++.......+...+..+.|+|+++.|+++..
T Consensus        21 ~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~  100 (388)
T 3pe7_A           21 AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKD  100 (388)
T ss_dssp             CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEET
T ss_pred             cceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeC
Confidence            344566677766666     899999999998887 66  4888999988887776666656667889999999999987


Q ss_pred             CCCCCceEEEEccCCceeeeecccCcceEEEE--eccCCCEEEEe----------------------eCCCeEEEEeccC
Q 023822           97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLS--LCSSKDCFISG----------------------SLDRTVLLWDQRA  152 (276)
Q Consensus        97 ~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~--~~~~~~~l~~~----------------------~~d~~i~iwd~~~  152 (276)
                         ++.|++||+.+++....+..+...+....  ++|++++++..                      ..+..|.+||+.+
T Consensus       101 ---~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~  177 (388)
T 3pe7_A          101 ---GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT  177 (388)
T ss_dssp             ---TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT
T ss_pred             ---CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCC
Confidence               88999999999987766665665554444  48899887742                      2446899999998


Q ss_pred             ceeeeeE-eecCCCeeEecC-CCcEEEEeeC-------CeEEEEecccCCCCCeeeeeecCCC--CCceEEEECCCCcEE
Q 023822          153 EKCQGLL-RVQGRPAAAYDD-QGLVFAVAFG-------GYIRMFDARKYEKGPFDIFSVGGDI--SDANVVKFSNDGRLM  221 (276)
Q Consensus       153 ~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~d-------~~i~~~d~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l  221 (276)
                      ++..... ....+..+.|+| +++.++...+       ..|.++|......     ..+..+.  ..+..++|+|+|+.|
T Consensus       178 g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-----~~l~~~~~~~~~~~~~~spdg~~l  252 (388)
T 3pe7_A          178 GESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-----RKVKTHAEGESCTHEFWVPDGSAL  252 (388)
T ss_dssp             CCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-----EESCCCCTTEEEEEEEECTTSSCE
T ss_pred             CceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-----EEeeeCCCCcccccceECCCCCEE
Confidence            8765554 333456889999 9987776652       2678888765432     2222222  247788999999977


Q ss_pred             EEeec-CC----cEEEEECCCCcEEEEeecCCCCCCc---eEEEEECCCCcEEEEec
Q 023822          222 LLTTM-EG----HIHVLDSFRGTLLSTYNVKPVSRNS---TLEASFSPEGMFVISGR  270 (276)
Q Consensus       222 ~~~~~-dg----~i~i~d~~~~~~~~~~~~~~~~~~~---v~~~~~s~~g~~l~~~~  270 (276)
                      +..+. ++    .|++||+.+++........ ++...   ...++|+|||+.|+...
T Consensus       253 ~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~~~~~~~~~~~~~~spdg~~l~~~~  308 (388)
T 3pe7_A          253 VYVSYLKGSPDRFIYSADPETLENRQLTSMP-ACSHLMSNYDGSLMVGDGSDAPVDV  308 (388)
T ss_dssp             EEEEEETTCCCEEEEEECTTTCCEEEEEEEC-CEEEEEECTTSSEEEEEECCC----
T ss_pred             EEEecCCCCCcceEEEEecCCCceEEEEcCC-CceeeeecCCCCeEccCCCcceeEe
Confidence            66543 22    3999999998754332210 11000   11237999999887643

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.88  E-value=1.2e-21  Score=169.89  Aligned_cols=225  Identities=9%  Similarity=0.120  Sum_probs=157.4

Q ss_pred             cEEEEEEcCCCCEEEEeec---------CCeEEEEEccCCeee--eeeeeeeeceEEEEEeccCCeEEEeccCCCCCceE
Q 023822           36 RISSMDFHKSSSYLVTASD---------DESIRLYDVTAATCL--KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (276)
Q Consensus        36 ~v~~~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~  104 (276)
                      .+.+++|||||++|++++.         ++.|++||+.+++.+  ..+   ...+..++|+|||+.|+++.    ++.|+
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~----~~~i~  133 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY----QNNIY  133 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE----TTEEE
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE----CCeEE
Confidence            3889999999999998876         789999999988863  222   24688999999999999986    88999


Q ss_pred             EEEccCCceeeee-cccCcce-----------------EEEEeccCCCEEEEeeCCC-----------------------
Q 023822          105 LLSLHDNKYLRYF-KGHHDRV-----------------VSLSLCSSKDCFISGSLDR-----------------------  143 (276)
Q Consensus       105 ~~d~~~~~~~~~~-~~~~~~i-----------------~~~~~~~~~~~l~~~~~d~-----------------------  143 (276)
                      +|++.+++..+.. .++...+                 .+++|+|||++|++++.|.                       
T Consensus       134 ~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  213 (719)
T 1z68_A          134 LKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIP  213 (719)
T ss_dssp             EESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEE
T ss_pred             EEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeec
Confidence            9999888765432 2222222                 4899999999999987652                       


Q ss_pred             -----------eEEEEeccCceee---ee-----E--eecCCCeeEecCCCcEEEEeeC-----CeEEEEe----cccCC
Q 023822          144 -----------TVLLWDQRAEKCQ---GL-----L--RVQGRPAAAYDDQGLVFAVAFG-----GYIRMFD----ARKYE  193 (276)
Q Consensus       144 -----------~i~iwd~~~~~~~---~~-----~--~~~~~~~~~~~~~~~~l~~~~d-----~~i~~~d----~~~~~  193 (276)
                                 .|++||+.+++..   ..     +  +...+..++|+|++++++...+     ..|.+||    ..+++
T Consensus       214 yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~  293 (719)
T 1z68_A          214 YPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWD  293 (719)
T ss_dssp             CCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEE
T ss_pred             CCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCc
Confidence                       7889999887643   11     1  2233568899999988777542     3488899    66654


Q ss_pred             CCCeeeeeecCCCCCce-----EEEECCCCcEEEE--eecCC--cEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCc
Q 023822          194 KGPFDIFSVGGDISDAN-----VVKFSNDGRLMLL--TTMEG--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM  264 (276)
Q Consensus       194 ~~~~~~~~~~~~~~~i~-----~~~~~~~~~~l~~--~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  264 (276)
                      ...........+...+.     .++|+|+|+.|+.  ...+|  .|.+||+.+++ ...+.   .+...+..+.++ +++
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt---~~~~~v~~~~~~-d~~  368 (719)
T 1z68_A          294 CPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQIT---SGKWEAINIFRV-TQD  368 (719)
T ss_dssp             CCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECS---CSSSCEEEEEEE-CSS
T ss_pred             eEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecc---cCceEEEEEEEE-eCC
Confidence            32211100134555565     7899999986554  44455  57777877766 34444   345567777777 777


Q ss_pred             EEEEecCC
Q 023822          265 FVISGRVS  272 (276)
Q Consensus       265 ~l~~~~~d  272 (276)
                      .|+..+.+
T Consensus       369 ~i~~~~~~  376 (719)
T 1z68_A          369 SLFYSSNE  376 (719)
T ss_dssp             EEEEEESC
T ss_pred             EEEEEEec
Confidence            76665544

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.88  E-value=1.1e-19  Score=140.98  Aligned_cols=234  Identities=12%  Similarity=0.061  Sum_probs=168.8

Q ss_pred             cceeeccCCCcEEEEEEcCCCC-EEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceE
Q 023822           26 VGMSFRDYNGRISSMDFHKSSS-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (276)
Q Consensus        26 ~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~  104 (276)
                      ....+..+.....+++|+|+++ +++++..++.|..||..++  ...+..+...+.+++++++++.+++...   ++.|.
T Consensus        19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~---~~~i~   93 (296)
T 3e5z_A           19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHG---LRRLE   93 (296)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETT---TTEEE
T ss_pred             cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecC---CCeEE
Confidence            3455556677788999999998 7788888999999999876  5566666677999999999997776654   68999


Q ss_pred             EEEccCCceeeeeccc----CcceEEEEeccCCCEEEE----ee-------------CCCeEEEEeccCceeeeeE-eec
Q 023822          105 LLSLHDNKYLRYFKGH----HDRVVSLSLCSSKDCFIS----GS-------------LDRTVLLWDQRAEKCQGLL-RVQ  162 (276)
Q Consensus       105 ~~d~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~----~~-------------~d~~i~iwd~~~~~~~~~~-~~~  162 (276)
                      +||..+++........    ...+..++++|+|+++++    ++             ..+.|..++.. ++..... ...
T Consensus        94 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~  172 (296)
T 3e5z_A           94 RQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRV  172 (296)
T ss_dssp             EECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCS
T ss_pred             EEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCC
Confidence            9999887754433221    234678999999998887    33             13466666665 3332222 223


Q ss_pred             CCCeeEecCCCcEEEEee-CCeEEEEeccc-CCC-CCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCc
Q 023822          163 GRPAAAYDDQGLVFAVAF-GGYIRMFDARK-YEK-GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT  239 (276)
Q Consensus       163 ~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~-~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  239 (276)
                      ....++|+|+++++++.. ++.|.+||+.. +.. .....+  ..+...+..++++++|+++++.  ++.|.+||.. ++
T Consensus       173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~--~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~  247 (296)
T 3e5z_A          173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF--TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GD  247 (296)
T ss_dssp             SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE--CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SC
T ss_pred             CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe--eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CC
Confidence            345799999998885554 68999999872 221 001122  3345567889999999866655  7889999975 88


Q ss_pred             EEEEeecCCCCCCceEEEEE-CCCCcEEEEecCCCC
Q 023822          240 LLSTYNVKPVSRNSTLEASF-SPEGMFVISGRVSPF  274 (276)
Q Consensus       240 ~~~~~~~~~~~~~~v~~~~~-s~~g~~l~~~~~dg~  274 (276)
                      .+..+.   .+.. +.+++| +|+++.|++++.+++
T Consensus       248 ~~~~~~---~~~~-~~~~~f~~~d~~~L~v~t~~~l  279 (296)
T 3e5z_A          248 ELGRVL---TPQT-TSNLCFGGPEGRTLYMTVSTEF  279 (296)
T ss_dssp             EEEEEE---CSSC-CCEEEEESTTSCEEEEEETTEE
T ss_pred             EEEEEE---CCCC-ceeEEEECCCCCEEEEEcCCeE
Confidence            888777   3445 889999 689999988887765

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.88  E-value=2.9e-21  Score=155.51  Aligned_cols=237  Identities=10%  Similarity=0.011  Sum_probs=159.3

Q ss_pred             eeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEE--EEeccCCeEEEecc---------
Q 023822           28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLV--CFTSHPTTVIYSSK---------   96 (276)
Q Consensus        28 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~~~---------   96 (276)
                      ....+|...+..++|+||++.|+.++.++.|++||+.+++....+..+...+...  .++++++.++....         
T Consensus        74 ~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~  153 (388)
T 3pe7_A           74 QLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLT  153 (388)
T ss_dssp             ECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC
T ss_pred             EeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCccccccc
Confidence            3344555556678999999999999999999999999988776666555444333  34889988874320         


Q ss_pred             ----------CCCCCceEEEEccCCceeeeecccCcceEEEEecc-CCCEEEEeeCC------CeEEEEeccCceeeeeE
Q 023822           97 ----------NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLD------RTVLLWDQRAEKCQGLL  159 (276)
Q Consensus        97 ----------~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------~~i~iwd~~~~~~~~~~  159 (276)
                                .+.+..|.+||+.+++... +..+...+..++|+| +++.|+.+..+      ..|.++|+...+.....
T Consensus       154 ~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~  232 (388)
T 3pe7_A          154 DWKKFHEFYFTKPCCRLMRVDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVK  232 (388)
T ss_dssp             SHHHHHHHGGGCCCEEEEEEETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESC
T ss_pred             ccchhhhhhccCCcceEEEEECCCCceEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEee
Confidence                      1125789999999886544 445677789999999 99988877653      37888887765443333


Q ss_pred             eec---CCCeeEecCCCcEEEE-ee-CC----eEEEEecccCCCCCeeeeeecCCC---CCceEEEECCCCcEEEEe---
Q 023822          160 RVQ---GRPAAAYDDQGLVFAV-AF-GG----YIRMFDARKYEKGPFDIFSVGGDI---SDANVVKFSNDGRLMLLT---  224 (276)
Q Consensus       160 ~~~---~~~~~~~~~~~~~l~~-~~-d~----~i~~~d~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~---  224 (276)
                      ...   .+....|+|+|+.|+. +. ++    .|++||+.+++...  +.....+.   .....++|+|+|+.|+..   
T Consensus       233 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~--l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  310 (388)
T 3pe7_A          233 THAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQ--LTSMPACSHLMSNYDGSLMVGDGSDAPVDVQD  310 (388)
T ss_dssp             CCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEE--EEEECCEEEEEECTTSSEEEEEECCC------
T ss_pred             eCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEE--EEcCCCceeeeecCCCCeEccCCCcceeEeee
Confidence            222   2446789999986644 33 22    39999998865321  22222210   012234799999988754   


Q ss_pred             ------ecCCcEEEEECCCCcEEEEeecCCCCCC-----------ceEEEEECCCCcEEEEecC
Q 023822          225 ------TMEGHIHVLDSFRGTLLSTYNVKPVSRN-----------STLEASFSPEGMFVISGRV  271 (276)
Q Consensus       225 ------~~dg~i~i~d~~~~~~~~~~~~~~~~~~-----------~v~~~~~s~~g~~l~~~~~  271 (276)
                            ..+..|++||+.+++... +..   +..           .+..++|+|||++|+..+.
T Consensus       311 ~~~~~~~~~~~i~~~d~~~~~~~~-l~~---~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~  370 (388)
T 3pe7_A          311 DSGYKIENDPFLYVFNMKNGTQHR-VAR---HDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSD  370 (388)
T ss_dssp             ------CCCCEEEEEETTTTEEEE-EEE---CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred             ccccccCCCCEEEEEeccCCceEE-ecc---ccCcccccccccccCCCCccCCCCCCEEEEEec
Confidence                  446689999998877643 432   333           4778899999998877664

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.88  E-value=3.6e-19  Score=137.43  Aligned_cols=234  Identities=9%  Similarity=0.161  Sum_probs=167.9

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeee------eeeceEEEEEe-ccCCeEEEeccCCCCCce
Q 023822           31 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS------KKYGVDLVCFT-SHPTTVIYSSKNGWDESL  103 (276)
Q Consensus        31 ~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~------~~~~v~~~~~~-~~~~~l~~~~~~~~d~~i  103 (276)
                      .++-..+.+++++++++++++...++.|.+||.. ++.+..+..      +...+..+++. +++..+++...  .++.|
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~--~~~~i  102 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS--PTHQI  102 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG--GGCEE
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC--CCCEE
Confidence            3456779999999999988888889999999976 665555532      23467899995 55555554421  16889


Q ss_pred             EEEEccCCceeeeec-ccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe----ecCCCeeEecCCCcEEEE
Q 023822          104 RLLSLHDNKYLRYFK-GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR----VQGRPAAAYDDQGLVFAV  178 (276)
Q Consensus       104 ~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~  178 (276)
                      .+|| .+++.+..+. .+...+..++++|+++++++...++.|.+||.. ++....+.    ...+..++++++++++++
T Consensus       103 ~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~  180 (286)
T 1q7f_A          103 QIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFIS  180 (286)
T ss_dssp             EEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred             EEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEE
Confidence            9999 5666666553 234568999999999988887788999999965 44444442    123568999999998887


Q ss_pred             ee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCC-cEEEEECCCCcEEEEeecCCCCCCceEE
Q 023822          179 AF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG-HIHVLDSFRGTLLSTYNVKPVSRNSTLE  256 (276)
Q Consensus       179 ~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~v~~  256 (276)
                      .. ++.|++||....   ....+...++...+..++++|+|+++++...++ .|.+||. +++.+..+.... ....+.+
T Consensus       181 ~~~~~~i~~~~~~g~---~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~~  255 (286)
T 1q7f_A          181 DNRAHCVKVFNYEGQ---YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKV-KHAQCFD  255 (286)
T ss_dssp             EGGGTEEEEEETTCC---EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESS-CCSCEEE
T ss_pred             ECCCCEEEEEcCCCC---EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccC-CCCccee
Confidence            76 799999997531   111222222235688999999999888887776 9999994 677777776422 2335789


Q ss_pred             EEECCCCcEEEEecCCCCC
Q 023822          257 ASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       257 ~~~s~~g~~l~~~~~dg~v  275 (276)
                      ++++|+|+++++ +.|+.|
T Consensus       256 i~~~~~g~l~vs-~~~~~v  273 (286)
T 1q7f_A          256 VALMDDGSVVLA-SKDYRL  273 (286)
T ss_dssp             EEEETTTEEEEE-ETTTEE
T ss_pred             EEECCCCcEEEE-CCCCeE
Confidence            999999987777 456644

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.87  E-value=3.2e-19  Score=142.17  Aligned_cols=227  Identities=15%  Similarity=0.142  Sum_probs=155.2

Q ss_pred             ccccceeeccCCCcEEEEEEcCCCCEEEEee----------cCCeEEEEEccCCeeeeeeeee------eeceEEEEEec
Q 023822           23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTAS----------DDESIRLYDVTAATCLKTINSK------KYGVDLVCFTS   86 (276)
Q Consensus        23 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~   86 (276)
                      +.+....+..+..+  .++|+||+++|+++.          .++.|.+||..+++.+..+...      ......++++|
T Consensus        40 t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~sp  117 (361)
T 2oiz_A           40 NGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTT  117 (361)
T ss_dssp             TCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECT
T ss_pred             CCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECC
Confidence            34445566666555  899999999999886          3678999999999888887643      23467899999


Q ss_pred             cCCeEEEeccCCCCCceEEEEccCCceeee-ecccCcceEEEEeccCC-CEEEEee------------------------
Q 023822           87 HPTTVIYSSKNGWDESLRLLSLHDNKYLRY-FKGHHDRVVSLSLCSSK-DCFISGS------------------------  140 (276)
Q Consensus        87 ~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~i~~~~~~~~~-~~l~~~~------------------------  140 (276)
                      ++++++++... .++.|.+||+.+++.+.. +.. ... ..+.+.|++ ..+++.+                        
T Consensus       118 dg~~l~v~n~~-~~~~v~v~d~~~~~~~~~~i~~-~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~  194 (361)
T 2oiz_A          118 DGKFIVLQNAS-PATSIGIVDVAKGDYVEDVTAA-AGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQ  194 (361)
T ss_dssp             TSSEEEEEEES-SSEEEEEEETTTTEEEEEEGGG-TTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCC
T ss_pred             CCCEEEEECCC-CCCeEEEEECCCCcEEEEEecC-CCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccc
Confidence            99999998641 157899999999988776 432 111 112222322 2223333                        


Q ss_pred             ------------------------CCCeEEEEeccCcee--eeeE------------eecCCCeeEecCCCcEEEEee--
Q 023822          141 ------------------------LDRTVLLWDQRAEKC--QGLL------------RVQGRPAAAYDDQGLVFAVAF--  180 (276)
Q Consensus       141 ------------------------~d~~i~iwd~~~~~~--~~~~------------~~~~~~~~~~~~~~~~l~~~~--  180 (276)
                                              .++.|.++|+.....  ...+            ...+...++++|++..+.+..  
T Consensus       195 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~  274 (361)
T 2oiz_A          195 MFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHP  274 (361)
T ss_dssp             CSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEES
T ss_pred             eEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEcc
Confidence                                    344455555443211  1111            011223478899875555432  


Q ss_pred             ----------CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCC--cEEEEeecCC
Q 023822          181 ----------GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG--TLLSTYNVKP  248 (276)
Q Consensus       181 ----------d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~  248 (276)
                                .+.|.+||+.+.+.    +..+..+.  +..++|+|+|++|++++. +.|.+||..++  +.+..+.   
T Consensus       275 ~~~~~~~~~~~~~v~viD~~t~~~----v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~---  344 (361)
T 2oiz_A          275 DGKEGTHKFPAAEIWVMDTKTKQR----VARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIE---  344 (361)
T ss_dssp             SCCTTCTTCCCSEEEEEETTTTEE----EEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEET---
T ss_pred             CCCcccccCCCceEEEEECCCCcE----EEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEec---
Confidence                      24899999988653    44455554  899999999999998887 99999999999  9888875   


Q ss_pred             CCCCceEEEEECCCCc
Q 023822          249 VSRNSTLEASFSPEGM  264 (276)
Q Consensus       249 ~~~~~v~~~~~s~~g~  264 (276)
                      ........++++|+|+
T Consensus       345 ~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          345 GAAEASLQVQFHPVGG  360 (361)
T ss_dssp             TSCSSEEEEEECCCSC
T ss_pred             cCCCCcEEEEecCCCC
Confidence            4667788999999986

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.86  E-value=6.7e-19  Score=152.42  Aligned_cols=233  Identities=12%  Similarity=0.082  Sum_probs=160.9

Q ss_pred             cCCCcEEEEEEcCCCCEEEEeecCC-----eEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCC-------
Q 023822           32 DYNGRISSMDFHKSSSYLVTASDDE-----SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW-------   99 (276)
Q Consensus        32 ~h~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-------   99 (276)
                      +|...+..++|||||++||.+..++     .|++||+.+++....... ...+..++|+||++.|+.+.....       
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-CcccceEEEEeCCCEEEEEEECCcccccccc
Confidence            3555788999999999998776543     899999999987664332 234678999999999999886211       


Q ss_pred             ------CCceEEEEccCCcee--e--eecccCcceEEEEeccCCCEEEEeeC-----CCeEEEEeccC------ce-eee
Q 023822          100 ------DESLRLLSLHDNKYL--R--YFKGHHDRVVSLSLCSSKDCFISGSL-----DRTVLLWDQRA------EK-CQG  157 (276)
Q Consensus       100 ------d~~i~~~d~~~~~~~--~--~~~~~~~~i~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~------~~-~~~  157 (276)
                            ...|++|++.+++..  .  ....|...+..+.|+|||++|+..+.     +..|++||+.+      +. ...
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~  280 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV  280 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred             ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence                  123999999887632  2  22234556789999999998887765     56899999986      42 233


Q ss_pred             eEe-ecCCCeeEecCCCcEEEEee--C---CeEEEEecccCCCCCeeeeeecCCC-CCceEEEECCCCcEEEEeecCCc-
Q 023822          158 LLR-VQGRPAAAYDDQGLVFAVAF--G---GYIRMFDARKYEKGPFDIFSVGGDI-SDANVVKFSNDGRLMLLTTMEGH-  229 (276)
Q Consensus       158 ~~~-~~~~~~~~~~~~~~~l~~~~--d---~~i~~~d~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~-  229 (276)
                      .+. ........++|++..++..+  +   ..|.+||+.++......... .... ..+..++|++++.++++...++. 
T Consensus       281 ~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~lv~~~~~~g~~  359 (710)
T 2xdw_A          281 KLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV-PEHEKDVLEWVACVRSNFLVLCYLHDVKN  359 (710)
T ss_dssp             EEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE-CCCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred             EeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceecc-CCCCCCeEEEEEEEcCCEEEEEEEECCEE
Confidence            332 22222345778876555544  2   46999998775321111211 2222 35778899988888888888884 


Q ss_pred             -EEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEe
Q 023822          230 -IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG  269 (276)
Q Consensus       230 -i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  269 (276)
                       |.+|++.+++.+..+.   .+.+.+..++++|+++.++..
T Consensus       360 ~l~~~~~~~g~~~~~l~---~~~~~v~~~~~s~d~~~l~~~  397 (710)
T 2xdw_A          360 TLQLHDLATGALLKIFP---LEVGSVVGYSGQKKDTEIFYQ  397 (710)
T ss_dssp             EEEEEETTTCCEEEEEC---CCSSEEEEEECCTTCSEEEEE
T ss_pred             EEEEEECCCCCEEEecC---CCCceEEEEecCCCCCEEEEE
Confidence             6667877888777777   457788999999999766544

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.85  E-value=8.1e-20  Score=156.99  Aligned_cols=239  Identities=10%  Similarity=0.036  Sum_probs=165.6

Q ss_pred             eeccCCCcEEEEEEcCCCCEEEEe--ecCCeEEEEEccCCeeeeeeeeeeeceE---------EEEEe--ccCCe-EEEe
Q 023822           29 SFRDYNGRISSMDFHKSSSYLVTA--SDDESIRLYDVTAATCLKTINSKKYGVD---------LVCFT--SHPTT-VIYS   94 (276)
Q Consensus        29 ~~~~h~~~v~~~~~~~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~-l~~~   94 (276)
                      .+.+|...+..++|+++.-+++..  +.++...||....+.....+..+...+.         ...|+  ||++. |+.+
T Consensus        18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~   97 (662)
T 3azo_A           18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT   97 (662)
T ss_dssp             HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred             HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence            356788999999999886666666  5588999999655555556665555555         56666  99998 7776


Q ss_pred             ccCCCCCceEEEEcc--CCceeeeecc-----cCcceEEEEeccCCCEEEEeeCC----------CeEEEEeccC-----
Q 023822           95 SKNGWDESLRLLSLH--DNKYLRYFKG-----HHDRVVSLSLCSSKDCFISGSLD----------RTVLLWDQRA-----  152 (276)
Q Consensus        95 ~~~~~d~~i~~~d~~--~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~d----------~~i~iwd~~~-----  152 (276)
                      ...  +..|.++++.  .......+..     |...+..++|+|||+.|++++.+          ..|++||+.+     
T Consensus        98 ~~~--~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  175 (662)
T 3azo_A           98 HFG--DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD  175 (662)
T ss_dssp             BTT--TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred             ECC--CCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence            642  5567777765  2033445554     66788999999999999988876          5899999988     


Q ss_pred             -ceeeeeE-e-ecCCCeeEecCCCcEEEEee-C--------CeEEEEecc-cCCCCCeeeeeecCCCCCceEEEECCCCc
Q 023822          153 -EKCQGLL-R-VQGRPAAAYDDQGLVFAVAF-G--------GYIRMFDAR-KYEKGPFDIFSVGGDISDANVVKFSNDGR  219 (276)
Q Consensus       153 -~~~~~~~-~-~~~~~~~~~~~~~~~l~~~~-d--------~~i~~~d~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  219 (276)
                       ++..... . ...+..++|+|+|+.|+... +        ..|++||+. ++..... ......+...+..++|+|||+
T Consensus       176 ~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~-~~l~~~~~~~~~~~~~spdg~  254 (662)
T 3azo_A          176 RSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADT-RTLLGGPEEAIAQAEWAPDGS  254 (662)
T ss_dssp             GGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEE-EEEEEETTBCEEEEEECTTSC
T ss_pred             CCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCccccc-EEeCCCCCceEcceEECCCCe
Confidence             5443322 1 22345789999999887665 4        379999998 4411011 112223456789999999999


Q ss_pred             EEEEeecCC--cEEEEECCCCcEEEEeecCCCCCCc--------eEEEEECCCCcEEEEecCCCC
Q 023822          220 LMLLTTMEG--HIHVLDSFRGTLLSTYNVKPVSRNS--------TLEASFSPEGMFVISGRVSPF  274 (276)
Q Consensus       220 ~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~--------v~~~~~s~~g~~l~~~~~dg~  274 (276)
                      ++++++.++  .|.+||..+++......   .+...        +..++|+|+++++++++. +.
T Consensus       255 l~~~~~~~~~~~l~~~~~~~~~~~~l~~---~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~  315 (662)
T 3azo_A          255 LIVATDRTGWWNLHRVDPATGAATQLCR---REEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA  315 (662)
T ss_dssp             EEEEECTTSSCEEEEECTTTCCEEESSC---CSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS
T ss_pred             EEEEECCCCCeEEEEEECCCCceeeccc---ccccccCccccccCceEeEeCCCEEEEEEEc-Cc
Confidence            878887788  67777776776554433   12111        567899999999998876 54

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.85  E-value=5.6e-19  Score=140.75  Aligned_cols=223  Identities=8%  Similarity=0.021  Sum_probs=147.9

Q ss_pred             CCCEEEEee------cCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEecc-------CCCCCceEEEEccCC
Q 023822           45 SSSYLVTAS------DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK-------NGWDESLRLLSLHDN  111 (276)
Q Consensus        45 ~~~~l~~~~------~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------~~~d~~i~~~d~~~~  111 (276)
                      +++++++..      .|+.|.+||..+++.+..+..+..+  .++|+|++++++++..       +..++.|.+||+.+.
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~   91 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL   91 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence            455555543      4789999999999988888776655  8999999999998862       011577999999998


Q ss_pred             ceeeeeccc------CcceEEEEeccCCCEEEEeeC--CCeEEEEeccCceeeee-EeecCCCeeEecCCC--cEEEEee
Q 023822          112 KYLRYFKGH------HDRVVSLSLCSSKDCFISGSL--DRTVLLWDQRAEKCQGL-LRVQGRPAAAYDDQG--LVFAVAF  180 (276)
Q Consensus       112 ~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~--~~l~~~~  180 (276)
                      +.+..+...      ......++++|++++|+++..  +++|.+||+.+.+.+.. +.......+.+.|++  .+++.+.
T Consensus        92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~  171 (361)
T 2oiz_A           92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICG  171 (361)
T ss_dssp             CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEET
T ss_pred             cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECC
Confidence            888777532      234678999999999988864  57999999999988776 422221112233322  1222222


Q ss_pred             CCeEEEEe------------------------------------------------cccCCCCCeeeeeecC--------
Q 023822          181 GGYIRMFD------------------------------------------------ARKYEKGPFDIFSVGG--------  204 (276)
Q Consensus       181 d~~i~~~d------------------------------------------------~~~~~~~~~~~~~~~~--------  204 (276)
                      ||.+.+|+                                                +...............        
T Consensus       172 dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~  251 (361)
T 2oiz_A          172 DGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNW  251 (361)
T ss_dssp             TSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTC
T ss_pred             CCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccccccc
Confidence            33333333                                                3221110000000000        


Q ss_pred             CCCCceEEEECCCCcEEEEeec-----------CCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCC
Q 023822          205 DISDANVVKFSNDGRLMLLTTM-----------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       205 ~~~~i~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  273 (276)
                      .......++|+|+++.++++..           .+.|.+||+.+++.+..+.   .+.  +.+++|+|||++|++++. +
T Consensus       252 ~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~---~~~--p~~ia~spdg~~l~v~n~-~  325 (361)
T 2oiz_A          252 VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIP---GRD--ALSMTIDQQRNLMLTLDG-G  325 (361)
T ss_dssp             EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEE---CTT--CCEEEEETTTTEEEEECS-S
T ss_pred             ccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEe---cCC--eeEEEECCCCCEEEEeCC-C
Confidence            0011223789999887777643           3479999999999999998   344  899999999999998876 5


Q ss_pred             CC
Q 023822          274 FS  275 (276)
Q Consensus       274 ~v  275 (276)
                      .|
T Consensus       326 ~v  327 (361)
T 2oiz_A          326 NV  327 (361)
T ss_dssp             CE
T ss_pred             eE
Confidence            54

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.85  E-value=3.8e-20  Score=149.20  Aligned_cols=220  Identities=8%  Similarity=-0.010  Sum_probs=150.9

Q ss_pred             EEEEEEcCCCCEEEEeecC---CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCce
Q 023822           37 ISSMDFHKSSSYLVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY  113 (276)
Q Consensus        37 v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~  113 (276)
                      +..++|+|||++|+.....   ..|.+||+.+++.......+......+.|+|+++.|+.+..   ++.|++||+.+++.
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~---~~~l~~~d~~~~~~  114 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKN---ELNLMKVDLETLEE  114 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEET---TTEEEEEETTTCCE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEc---CCcEEEEECCCCCc
Confidence            7788999999998876543   47889999888765443333322334789999999999887   77899999998876


Q ss_pred             eeeecccCcceEE-------------------EEeccCCCEEEEe-----eCCCeEEEEeccCceeeeeE-eecCCCeeE
Q 023822          114 LRYFKGHHDRVVS-------------------LSLCSSKDCFISG-----SLDRTVLLWDQRAEKCQGLL-RVQGRPAAA  168 (276)
Q Consensus       114 ~~~~~~~~~~i~~-------------------~~~~~~~~~l~~~-----~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~  168 (276)
                      ......+......                   +.|+|+++.++..     ..+..|++||+.+++..... ....+..+.
T Consensus       115 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~  194 (396)
T 3c5m_A          115 QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPI  194 (396)
T ss_dssp             EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEE
T ss_pred             EEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccce
Confidence            6555434432222                   3567777766554     35678999999988765554 333456789


Q ss_pred             ecC-CCcEEEEee-C------CeEEEEecccCCCCCeeeeeecCC--CCCceEEEECCCCcEEEEeecC-----CcEEEE
Q 023822          169 YDD-QGLVFAVAF-G------GYIRMFDARKYEKGPFDIFSVGGD--ISDANVVKFSNDGRLMLLTTME-----GHIHVL  233 (276)
Q Consensus       169 ~~~-~~~~l~~~~-d------~~i~~~d~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~  233 (276)
                      |+| ++..++... +      ..|.+||+...+.     ..+..+  ...+..++|+|+|++|+.++.+     +.|++|
T Consensus       195 ~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-----~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~  269 (396)
T 3c5m_A          195 YRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-----RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKA  269 (396)
T ss_dssp             EETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-----EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEE
T ss_pred             ECCCCCCEEEEEecCCCCCCCceEEEEECCCCce-----eEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEE
Confidence            999 777555444 2      4688888865432     111112  2357788999999988777543     449999


Q ss_pred             ECCCCcEEEEeecCCCCCCceEEEEECC-CCcEEEEec
Q 023822          234 DSFRGTLLSTYNVKPVSRNSTLEASFSP-EGMFVISGR  270 (276)
Q Consensus       234 d~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~  270 (276)
                      |+.+++......    ... .. +.|+| ||+++++++
T Consensus       270 d~~~g~~~~l~~----~~~-~~-~~~s~~dg~~l~~~~  301 (396)
T 3c5m_A          270 NPETLENEEVMV----MPP-CS-HLMSNFDGSLMVGDG  301 (396)
T ss_dssp             CTTTCCEEEEEE----CCS-EE-EEEECSSSSEEEEEE
T ss_pred             ECCCCCeEEeee----CCC-CC-CCccCCCCceEEEec
Confidence            998887654433    111 23 89999 999888754

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.85  E-value=2.2e-18  Score=136.58  Aligned_cols=218  Identities=9%  Similarity=0.067  Sum_probs=150.2

Q ss_pred             CcEEEEEEcCCCCEEEEeecC---C--eEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccC------------
Q 023822           35 GRISSMDFHKSSSYLVTASDD---E--SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN------------   97 (276)
Q Consensus        35 ~~v~~~~~~~~~~~l~~~~~d---~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~------------   97 (276)
                      ..+..++|+|||+.|+..+.+   +  .|.+|++.+++.......+ . +..+.|+|+++.|+.++..            
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~  136 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD  136 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence            457889999999999987754   3  4888888887765554443 3 8999999999999988641            


Q ss_pred             ------------CCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCC-------eEEEEeccCceeeee
Q 023822           98 ------------GWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR-------TVLLWDQRAEKCQGL  158 (276)
Q Consensus        98 ------------~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-------~i~iwd~~~~~~~~~  158 (276)
                                  .....|.+||+.+++.+..+.. . .+..+.|+|++ +++++..++       ...+|.+.+++....
T Consensus       137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l  213 (347)
T 2gop_A          137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKM  213 (347)
T ss_dssp             CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEE
T ss_pred             cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEEe
Confidence                        0025799999988876455554 3 78899999999 777776542       334444444443332


Q ss_pred             EeecCCCeeEecCCCcEEEEee-C--------CeEEEEecccCCCCCeeeeeecCCCCCceE-EEECCCCcEEEEeecCC
Q 023822          159 LRVQGRPAAAYDDQGLVFAVAF-G--------GYIRMFDARKYEKGPFDIFSVGGDISDANV-VKFSNDGRLMLLTTMEG  228 (276)
Q Consensus       159 ~~~~~~~~~~~~~~~~~l~~~~-d--------~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg  228 (276)
                      ...  .....++|+|+.++... +        ..|.+||  +++.    ......+...+.. +.|+ ++ ++++++.++
T Consensus       214 ~~~--~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~----~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~  283 (347)
T 2gop_A          214 FEK--VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV----MGILDEVDRGVGQAKIKD-GK-VYFTLFEEG  283 (347)
T ss_dssp             EEE--ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE----EESSTTCCSEEEEEEEET-TE-EEEEEEETT
T ss_pred             ccC--cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCce----EeccccCCcccCCccEEc-Cc-EEEEEecCC
Confidence            222  33344589998766554 3        3688888  3221    2222344566776 8999 88 888899999


Q ss_pred             cEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCC
Q 023822          229 HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPF  274 (276)
Q Consensus       229 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~  274 (276)
                      .++|| +.+++......    +...|.+++|+|  .++++++.++.
T Consensus       284 ~~~l~-~~~g~~~~~~~----~~~~v~~~~~s~--~~~~~~~~~~~  322 (347)
T 2gop_A          284 SVNLY-IWDGEIKPIAK----GRHWIMGFDVDE--IVVYLKETATR  322 (347)
T ss_dssp             EEEEE-EESSSEEEEEC----SSSEEEEEEESS--SEEEEEECSSS
T ss_pred             cEEEE-EcCCceEEEec----CCCeEEeeeeeC--cEEEEEcCCCC
Confidence            99999 87666544433    477899999999  67777666654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.83  E-value=2.3e-18  Score=137.53  Aligned_cols=198  Identities=11%  Similarity=0.030  Sum_probs=139.5

Q ss_pred             EEEEEEcCCCCE--EEEee-------------cCCeEEEEEcc-CCeeeeeeee----eeeceEEEEEeccCCeEEEecc
Q 023822           37 ISSMDFHKSSSY--LVTAS-------------DDESIRLYDVT-AATCLKTINS----KKYGVDLVCFTSHPTTVIYSSK   96 (276)
Q Consensus        37 v~~~~~~~~~~~--l~~~~-------------~d~~i~iwd~~-~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~   96 (276)
                      +.+++|+|+|++  ++++.             .++.+.+|++. +++....+..    +...+..++|+|++++++++..
T Consensus        85 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~  164 (365)
T 1jof_A           85 PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADL  164 (365)
T ss_dssp             GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred             CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcC
Confidence            556899999994  55553             68999999997 4655444432    3457899999999999887754


Q ss_pred             CCCCCceEEEEcc-CCcee--eeec--ccCcceEEEEeccCCCEEEEeeC-CCeEEEEecc--Cceeee---eEe---e-
Q 023822           97 NGWDESLRLLSLH-DNKYL--RYFK--GHHDRVVSLSLCSSKDCFISGSL-DRTVLLWDQR--AEKCQG---LLR---V-  161 (276)
Q Consensus        97 ~~~d~~i~~~d~~-~~~~~--~~~~--~~~~~i~~~~~~~~~~~l~~~~~-d~~i~iwd~~--~~~~~~---~~~---~-  161 (276)
                      .  ++.|++|++. +++..  ..+.  .|...+..++|+|+++++++++. ++.|.+|+++  +++...   .+.   . 
T Consensus       165 ~--~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~  242 (365)
T 1jof_A          165 T--ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG  242 (365)
T ss_dssp             T--TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT
T ss_pred             C--CCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCC
Confidence            2  6899999998 67643  2333  23566899999999998887765 6899999875  444321   121   1 


Q ss_pred             ----c-------CCCeeE-ecCCCcEEEEee--CC-----eEEEEeccc-CCCCCeeee-eecCCCCCceEEEECC---C
Q 023822          162 ----Q-------GRPAAA-YDDQGLVFAVAF--GG-----YIRMFDARK-YEKGPFDIF-SVGGDISDANVVKFSN---D  217 (276)
Q Consensus       162 ----~-------~~~~~~-~~~~~~~l~~~~--d~-----~i~~~d~~~-~~~~~~~~~-~~~~~~~~i~~~~~~~---~  217 (276)
                          .       .+..++ |+|++++|+++.  ++     .|.+|++.. ++.  .... ....+...+..++|+|   +
T Consensus       243 ~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~--~~~~~~~~~~~~~~~~~a~sp~~~d  320 (365)
T 1jof_A          243 IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSI--EKQLFLSPTPTSGGHSNAVSPCPWS  320 (365)
T ss_dssp             CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCE--EEEEEEEECSSCCTTCCCEEECTTC
T ss_pred             cCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCE--EEeeeeeecCCCCcccceecCCCcC
Confidence                1       245688 999998776665  33     899999963 221  1111 1223444577899999   8


Q ss_pred             CcEEEEeecC-CcEEEEECCCC
Q 023822          218 GRLMLLTTME-GHIHVLDSFRG  238 (276)
Q Consensus       218 ~~~l~~~~~d-g~i~i~d~~~~  238 (276)
                      |++|++++.+ +.|.+|++...
T Consensus       321 g~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          321 DEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             TTEEEEECSSSCEEEEEEEETT
T ss_pred             CCEEEEEEcCCCeEEEEEEchh
Confidence            9999998864 89999998765

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.83  E-value=1.9e-18  Score=148.47  Aligned_cols=231  Identities=10%  Similarity=0.028  Sum_probs=155.7

Q ss_pred             eeeccCCCcEE---------EEEEc--CCCCE-EEEeec-CCeEEEEEcc--CCeeeeeeee-----eeeceEEEEEecc
Q 023822           28 MSFRDYNGRIS---------SMDFH--KSSSY-LVTASD-DESIRLYDVT--AATCLKTINS-----KKYGVDLVCFTSH   87 (276)
Q Consensus        28 ~~~~~h~~~v~---------~~~~~--~~~~~-l~~~~~-d~~i~iwd~~--~~~~~~~~~~-----~~~~v~~~~~~~~   87 (276)
                      +.+..|...+.         ...|+  |||+. |+.++. +..|.++++.  .......+..     +...+..++|+||
T Consensus        61 ~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spD  140 (662)
T 3azo_A           61 ESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPE  140 (662)
T ss_dssp             EESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETT
T ss_pred             ceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCC
Confidence            44556665655         56666  99998 776553 5667777765  2033444444     5667899999999


Q ss_pred             CCeEEEeccCCCC----------CceEEEEccC------Cceeeeec-ccCcceEEEEeccCCCEEEEeeCC--------
Q 023822           88 PTTVIYSSKNGWD----------ESLRLLSLHD------NKYLRYFK-GHHDRVVSLSLCSSKDCFISGSLD--------  142 (276)
Q Consensus        88 ~~~l~~~~~~~~d----------~~i~~~d~~~------~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d--------  142 (276)
                      ++.|++++.   +          ..|++||+.+      ++. ..+. .+...+..++|+|||++|+.++.+        
T Consensus       141 g~~l~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~  216 (662)
T 3azo_A          141 RGEVWCMAE---EFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEG  216 (662)
T ss_dssp             TTEEEEEEE---EECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTC
T ss_pred             CCEEEEEEe---cccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCC
Confidence            999998886   4          6899999988      544 4454 566778889999999999887755        


Q ss_pred             CeEEEEecc-Cc---eeeeeEe--ecCCCeeEecCCCcEEEEee-CC--eEEEEecccCCCCCeeeeeecCCCC------
Q 023822          143 RTVLLWDQR-AE---KCQGLLR--VQGRPAAAYDDQGLVFAVAF-GG--YIRMFDARKYEKGPFDIFSVGGDIS------  207 (276)
Q Consensus       143 ~~i~iwd~~-~~---~~~~~~~--~~~~~~~~~~~~~~~l~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~~~------  207 (276)
                      ..|++||+. ++   +......  ...+..+.|+|+|++++++. ++  .|.+||+.+++.  ..+  ...+..      
T Consensus       217 ~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~--~~l--~~~~~~~~~p~w  292 (662)
T 3azo_A          217 TELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAA--TQL--CRREEEFAGPLW  292 (662)
T ss_dssp             EEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCE--EES--SCCSSBSSCCCC
T ss_pred             cEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCce--eec--ccccccccCccc
Confidence            379999998 56   3333333  24566899999999776666 56  677777654331  111  111111      


Q ss_pred             --CceEEEECCCCcEEEEeecCCcEEEE--ECCCCcEEEEeecCCCCCCceEEE-EECCCCcEEEEecC
Q 023822          208 --DANVVKFSNDGRLMLLTTMEGHIHVL--DSFRGTLLSTYNVKPVSRNSTLEA-SFSPEGMFVISGRV  271 (276)
Q Consensus       208 --~i~~~~~~~~~~~l~~~~~dg~i~i~--d~~~~~~~~~~~~~~~~~~~v~~~-~~s~~g~~l~~~~~  271 (276)
                        .+..++|+|+++++++++. +.++||  |..+++ +..+.   .+...+..+ +++++.-++++++.
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~---~~~~~~~~~~s~~~~~~~~~~~~~  356 (662)
T 3azo_A          293 TPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAA---GPWTEWAATLTVSGTRAVGVAASP  356 (662)
T ss_dssp             STTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECC---SSCCEEEEEEEEETTEEEEEEEET
T ss_pred             cccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEec---CCCCeEEEEEecCCCEEEEEEcCC
Confidence              1567999999999999988 999999  655555 55665   456677766 55444333444443

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.83  E-value=8.8e-18  Score=128.42  Aligned_cols=229  Identities=10%  Similarity=0.035  Sum_probs=158.4

Q ss_pred             cEEEEEEcCCCCEEE-EeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCcee
Q 023822           36 RISSMDFHKSSSYLV-TASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL  114 (276)
Q Consensus        36 ~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~  114 (276)
                      ...++++++++++++ +...++.|.+|+..+.............+..+++.++++ ++++..   ++.|.+||.......
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~---~~~i~~~d~~~~~~~  100 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTDF---NNRVVTLAAGSNNQT  100 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCC-EEEEET---TTEEEEECTTCSCCE
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCC-EEEEcC---CCEEEEEeCCCceEe
Confidence            678999999998777 546788999999765543322222334678899999888 444444   788999998765433


Q ss_pred             eeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-CCeEEEEeccc
Q 023822          115 RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARK  191 (276)
Q Consensus       115 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~  191 (276)
                      .........+..++++++++++++...++.|.+|+..+.......  .......++++++++++++.. ++.|.+||...
T Consensus       101 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~  180 (270)
T 1rwi_B          101 VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES  180 (270)
T ss_dssp             ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred             eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC
Confidence            222223356889999999998777777889999986654433222  223467899999998777776 68999999876


Q ss_pred             CCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecC
Q 023822          192 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRV  271 (276)
Q Consensus       192 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  271 (276)
                      ...    ..........+..++++++|.++++...++.|.+|+...........   .+...+.+++++++|+++++...
T Consensus       181 ~~~----~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~~~~p~~i~~~~~g~l~v~~~~  253 (270)
T 1rwi_B          181 NNQ----VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPF---TGLNTPLAVAVDSDRTVYVADRG  253 (270)
T ss_dssp             CCE----EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCC---CSCSCEEEEEECTTCCEEEEEGG
T ss_pred             Cce----EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeecc---CCCCCceeEEECCCCCEEEEECC
Confidence            432    11112223567899999999877777778899999986554332211   23357899999999998888777


Q ss_pred             CCCC
Q 023822          272 SPFS  275 (276)
Q Consensus       272 dg~v  275 (276)
                      ++.|
T Consensus       254 ~~~v  257 (270)
T 1rwi_B          254 NDRV  257 (270)
T ss_dssp             GTEE
T ss_pred             CCEE
Confidence            7654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.82  E-value=4e-17  Score=125.03  Aligned_cols=212  Identities=11%  Similarity=0.067  Sum_probs=167.4

Q ss_pred             CCCEEEEeecCCeEEEEEccCCeeeeeeeeee-eceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccC-c
Q 023822           45 SSSYLVTASDDESIRLYDVTAATCLKTINSKK-YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHH-D  122 (276)
Q Consensus        45 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~-~  122 (276)
                      .+++|++++.|+.|.+||.++|+.+..+..+. ..+.++.+.|+++.++ + .   ++.|..||. +++.+..+..+. .
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s-~---~~~V~~~d~-~G~~~W~~~~~~~~   77 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-S-Y---SKGAKMITR-DGRELWNIAAPAGC   77 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-E-C---BSEEEEECT-TSCEEEEEECCTTC
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-e-C---CCCEEEECC-CCCEEEEEcCCCCc
Confidence            46789999999999999999999999888765 4688999999999888 3 3   788999999 899998887653 5


Q ss_pred             ceEEEEeccCCCEEEEeeC-CCeEEEEeccCceeeeeEeec--------CCCeeEecCCCcEEEEee-CCeEEEEecccC
Q 023822          123 RVVSLSLCSSKDCFISGSL-DRTVLLWDQRAEKCQGLLRVQ--------GRPAAAYDDQGLVFAVAF-GGYIRMFDARKY  192 (276)
Q Consensus       123 ~i~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~  192 (276)
                      .+.++.+.++|+++++.+. ++.|..+|. +++.+..+...        ....+...+++.++++.. ++.|..||.. +
T Consensus        78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G  155 (276)
T 3no2_A           78 EMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G  155 (276)
T ss_dssp             EEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             cccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C
Confidence            7889999999999998887 788888885 56655555221        234567889999988877 7999999987 5


Q ss_pred             CCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCC---CCCCceEEEEECCCCcEEEEe
Q 023822          193 EKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP---VSRNSTLEASFSPEGMFVISG  269 (276)
Q Consensus       193 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~~~v~~~~~s~~g~~l~~~  269 (276)
                      +.    +...... ..+.++...++|+++++++.++.|..+|..+|+.+.++....   ..-..+..++..++|..+++.
T Consensus       156 ~~----~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          156 QL----LNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN  230 (276)
T ss_dssp             CE----EEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred             CE----EEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence            53    3343332 356678889999999998888899999999999998886321   112347888999999988876

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.82  E-value=1.2e-18  Score=150.48  Aligned_cols=231  Identities=11%  Similarity=0.020  Sum_probs=155.1

Q ss_pred             cCCCcEEEEEEcCCCCEEE-----EeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCc----
Q 023822           32 DYNGRISSMDFHKSSSYLV-----TASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES----  102 (276)
Q Consensus        32 ~h~~~v~~~~~~~~~~~l~-----~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~----  102 (276)
                      +|...+..++|||||++||     .|+.+..|++||+.+++.+............++|+|+++.|+.++.   +..    
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~---d~~~~~~  194 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWL---PTDPSIK  194 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEEC---CCCTTSC
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEe---cCCCCCc
Confidence            4666799999999999998     4445578999999998865111111112268999999999999876   444    


Q ss_pred             ---------eEEEEccCCc----eeeeecccCcceEEEEeccCCCEEEEeeCCC----eEEEEeccCceeeeeE-eecCC
Q 023822          103 ---------LRLLSLHDNK----YLRYFKGHHDRVVSLSLCSSKDCFISGSLDR----TVLLWDQRAEKCQGLL-RVQGR  164 (276)
Q Consensus       103 ---------i~~~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~----~i~iwd~~~~~~~~~~-~~~~~  164 (276)
                               |++|++.++.    .+.....+...+..+.|+|||++|+..+.++    .|++||..+++..... +....
T Consensus       195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~  274 (695)
T 2bkl_A          195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAK  274 (695)
T ss_dssp             GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCC
T ss_pred             cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCce
Confidence                     9999998876    2333334556788999999999888877665    6777776555433333 22333


Q ss_pred             CeeEecCCCcEEEEee----CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECC-CCc
Q 023822          165 PAAAYDDQGLVFAVAF----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF-RGT  239 (276)
Q Consensus       165 ~~~~~~~~~~~l~~~~----d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~  239 (276)
                      ....+ +++.+++.+.    ++.|.+||+.++................+..++|+ ++.++++...|+..+||.+. +++
T Consensus       275 ~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~  352 (695)
T 2bkl_A          275 YEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGK  352 (695)
T ss_dssp             EEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred             EEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCC
Confidence            44445 5555555444    47899999977542111122211224457788888 67888888899988887654 466


Q ss_pred             EEEEeecCCCCCCceEEEEECCCCcEEEEe
Q 023822          240 LLSTYNVKPVSRNSTLEASFSPEGMFVISG  269 (276)
Q Consensus       240 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  269 (276)
                      ....+..  ...+.+..++++|+++.|+..
T Consensus       353 ~~~~l~~--~~~~~v~~~~~s~d~~~l~~~  380 (695)
T 2bkl_A          353 PVRTVQL--PGVGAASNLMGLEDLDDAYYV  380 (695)
T ss_dssp             EEEECCC--SSSSEECCCBSCTTCSEEEEE
T ss_pred             eeEEecC--CCCeEEEEeecCCCCCEEEEE
Confidence            6665552  125678888999999776643

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.82  E-value=2.5e-19  Score=144.40  Aligned_cols=222  Identities=9%  Similarity=-0.009  Sum_probs=148.5

Q ss_pred             EEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEE-------------------EEEeccCCeEEEec--cC
Q 023822           39 SMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDL-------------------VCFTSHPTTVIYSS--KN   97 (276)
Q Consensus        39 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~~~~--~~   97 (276)
                      .+.|+|||+.|+.++.++.|++||+.+++.......+......                   +.|+|+++.++...  ..
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~  164 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHT  164 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHT
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccC
Confidence            4889999999999999999999999888765554433221111                   34566666655543  00


Q ss_pred             CCCCceEEEEccCCceeeeecccCcceEEEEecc-CCCEEEEeeCC------CeEEEEeccCceeeeeEeec---CCCee
Q 023822           98 GWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLD------RTVLLWDQRAEKCQGLLRVQ---GRPAA  167 (276)
Q Consensus        98 ~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~---~~~~~  167 (276)
                      ..+..|.+||+.+++..... .+...+..+.|+| +++.|+..+.+      ..|.+||+..++........   .+..+
T Consensus       165 ~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~  243 (396)
T 3c5m_A          165 NPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHE  243 (396)
T ss_dssp             CCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEE
T ss_pred             CCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccce
Confidence            12778999999988765444 4677789999999 78877766543      36888998765533322211   24467


Q ss_pred             EecCCCcEEEEee-C-----CeEEEEecccCCCCCeeeeeecCCCCCceEEEECC-CCcEEEEee---------------
Q 023822          168 AYDDQGLVFAVAF-G-----GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN-DGRLMLLTT---------------  225 (276)
Q Consensus       168 ~~~~~~~~l~~~~-d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~---------------  225 (276)
                      .|+|+++.|+... +     +.|++||+.+++..  .+....    ... +.|+| +|+++++++               
T Consensus       244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~--~l~~~~----~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~  316 (396)
T 3c5m_A          244 FWIPDGSAMAYVSYFKGQTDRVIYKANPETLENE--EVMVMP----PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNI  316 (396)
T ss_dssp             EECTTSSCEEEEEEETTTCCEEEEEECTTTCCEE--EEEECC----SEE-EEEECSSSSEEEEEECCC----------CC
T ss_pred             EECCCCCEEEEEecCCCCccceEEEEECCCCCeE--EeeeCC----CCC-CCccCCCCceEEEecCCcceeecccccccc
Confidence            9999998655543 2     34999999875421  111111    122 89999 999888754               


Q ss_pred             -cCCcEEEEECCCCcEEEEeecCCCCCC-----------ceEEEEECCCCcEEEEecCC
Q 023822          226 -MEGHIHVLDSFRGTLLSTYNVKPVSRN-----------STLEASFSPEGMFVISGRVS  272 (276)
Q Consensus       226 -~dg~i~i~d~~~~~~~~~~~~~~~~~~-----------~v~~~~~s~~g~~l~~~~~d  272 (276)
                       .+..|++||+.+++... +..   +..           .+..++|+|||++|+.++.+
T Consensus       317 ~~~~~i~~~d~~~~~~~~-l~~---~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~  371 (396)
T 3c5m_A          317 ENDPFLYVLNTKAKSAQK-LCK---HSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDF  371 (396)
T ss_dssp             CCCCEEEEEETTTTBCCE-EEE---CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT
T ss_pred             CCCCcEEEEecccCceEE-ccC---CCCccccccccccCCCCCceEccCCCeEEEEecC
Confidence             34789999998877543 331   222           25668999999988877653

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.82  E-value=1.5e-18  Score=150.97  Aligned_cols=231  Identities=9%  Similarity=0.052  Sum_probs=152.7

Q ss_pred             eeeccCCCc-----EEEEEEcCCCCEEEEeecC---------CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEE
Q 023822           28 MSFRDYNGR-----ISSMDFHKSSSYLVTASDD---------ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIY   93 (276)
Q Consensus        28 ~~~~~h~~~-----v~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   93 (276)
                      ..+.+|...     ...++|||||++|+.++.+         +.+.+||+.+++.. .+..+...+...+|+|||+.|+.
T Consensus        50 ~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~  128 (740)
T 4a5s_A           50 VFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAY  128 (740)
T ss_dssp             EEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEE
T ss_pred             EEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEE
Confidence            445555532     2347899999999998876         56779999998864 45566678999999999999999


Q ss_pred             eccCCCCCceEEEEccCCceeee-ecccCcce-----------------EEEEeccCCCEEEEeeCCC------------
Q 023822           94 SSKNGWDESLRLLSLHDNKYLRY-FKGHHDRV-----------------VSLSLCSSKDCFISGSLDR------------  143 (276)
Q Consensus        94 ~~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~i-----------------~~~~~~~~~~~l~~~~~d~------------  143 (276)
                      +.    ++.|++|++.+++..+. ..++...+                 ..+.|+|||++|+.++.|.            
T Consensus       129 ~~----~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~  204 (740)
T 4a5s_A          129 VW----NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYS  204 (740)
T ss_dssp             EE----TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECC
T ss_pred             EE----CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeec
Confidence            86    88999999988775442 22222222                 3589999999998875321            


Q ss_pred             ------------------------eEEEEeccC---cee--eeeE--------eecCCCeeEecCCCcEEEEee-----C
Q 023822          144 ------------------------TVLLWDQRA---EKC--QGLL--------RVQGRPAAAYDDQGLVFAVAF-----G  181 (276)
Q Consensus       144 ------------------------~i~iwd~~~---~~~--~~~~--------~~~~~~~~~~~~~~~~l~~~~-----d  181 (276)
                                              +|++||+.+   ++.  ...+        +...+..++|+|++++++...     +
T Consensus       205 ~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~  284 (740)
T 4a5s_A          205 DESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNY  284 (740)
T ss_dssp             STTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTE
T ss_pred             CCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCE
Confidence                                    588899988   631  1222        112255789999999666544     2


Q ss_pred             CeEEEEecccCC----CCCeeeeeecCCCCCce-----EEEECCCCcEEE-Eeec-CC--cEEEEECCCCcEEEEeecCC
Q 023822          182 GYIRMFDARKYE----KGPFDIFSVGGDISDAN-----VVKFSNDGRLML-LTTM-EG--HIHVLDSFRGTLLSTYNVKP  248 (276)
Q Consensus       182 ~~i~~~d~~~~~----~~~~~~~~~~~~~~~i~-----~~~~~~~~~~l~-~~~~-dg--~i~i~d~~~~~~~~~~~~~~  248 (276)
                      ..|++||+.+++    ...........+...+.     ..+|+|||+.|+ ..+. +|  .|++||..+++......   
T Consensus       285 ~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~---  361 (740)
T 4a5s_A          285 SVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITK---  361 (740)
T ss_dssp             EEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCC---
T ss_pred             EEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEeccc---
Confidence            479999998865    21111121133444443     789999999876 5553 33  58888987766543332   


Q ss_pred             CCCCceEEEEECCCCcEEEE
Q 023822          249 VSRNSTLEASFSPEGMFVIS  268 (276)
Q Consensus       249 ~~~~~v~~~~~s~~g~~l~~  268 (276)
                       ....+..+.+ +|++.|+.
T Consensus       362 -g~~~v~~~~~-~d~~~i~f  379 (740)
T 4a5s_A          362 -GTWEVIGIEA-LTSDYLYY  379 (740)
T ss_dssp             -SSSCEEEEEE-ECSSEEEE
T ss_pred             -CCEEEEEEEE-EeCCEEEE
Confidence             3445555432 33554443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.80  E-value=2.7e-17  Score=130.35  Aligned_cols=215  Identities=7%  Similarity=0.031  Sum_probs=146.6

Q ss_pred             CcEEEEEEcCCCCEEEEee---------cCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCC--CCCce
Q 023822           35 GRISSMDFHKSSSYLVTAS---------DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG--WDESL  103 (276)
Q Consensus        35 ~~v~~~~~~~~~~~l~~~~---------~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~--~d~~i  103 (276)
                      ..+..+++  ||+.++...         .++.|.+||+.+++... +    ..+..+.|+|+++.|+.+...+  ....|
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l   87 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEI   87 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence            45677778  888887642         25689999998876533 3    4688899999999999887521  12348


Q ss_pred             EEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCC---------------------------CeEEEEeccCceee
Q 023822          104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLD---------------------------RTVLLWDQRAEKCQ  156 (276)
Q Consensus       104 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------------------------~~i~iwd~~~~~~~  156 (276)
                      .+|++.+++...... +.. +..++|+|+++.|+.++.+                           ..|++||+.+++.+
T Consensus        88 ~~~~~~~g~~~~l~~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~  165 (347)
T 2gop_A           88 WVADLETLSSKKILE-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI  165 (347)
T ss_dssp             EEEETTTTEEEEEEE-ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred             EEEECCCCceEEEEc-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence            888888877655444 334 8999999999988887642                           57999999988763


Q ss_pred             eeEeecCCCeeEecCCCcEEEEee-C------C-eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecC-
Q 023822          157 GLLRVQGRPAAAYDDQGLVFAVAF-G------G-YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME-  227 (276)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~l~~~~-d------~-~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-  227 (276)
                      ..+....+..+.|+|++ +++++. +      . ...+|.+.+++     ...+..+ ..+..+  +|+|++|+.++.+ 
T Consensus       166 ~~l~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-----~~~l~~~-~~~~~~--spdg~~l~~~~~~~  236 (347)
T 2gop_A          166 EEFEKPRFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-----EEKMFEK-VSFYAV--DSDGERILLYGKPE  236 (347)
T ss_dssp             EEEEEETTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-----EEEEEEE-ESEEEE--EECSSCEEEEECCS
T ss_pred             eeecCCCcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-----eEEeccC-cceeeE--CCCCCEEEEEEccc
Confidence            43422377789999999 666664 2      2 34555444322     1112122 334443  9999988877644 


Q ss_pred             -------CcEEEEECCCCcEEEEeecCCCCCCceEE-EEECCCCcEEEEecCCCC
Q 023822          228 -------GHIHVLDSFRGTLLSTYNVKPVSRNSTLE-ASFSPEGMFVISGRVSPF  274 (276)
Q Consensus       228 -------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~-~~~s~~g~~l~~~~~dg~  274 (276)
                             ..|.+||  +++......   .+...+.. +.|+ || ++++++.++.
T Consensus       237 ~~~~~~~~~l~~~d--~~~~~~l~~---~~~~~~~~~~~~s-dg-~~~~~~~~~~  284 (347)
T 2gop_A          237 KKYMSEHNKLYIYD--GKEVMGILD---EVDRGVGQAKIKD-GK-VYFTLFEEGS  284 (347)
T ss_dssp             SSCCCSSCEEEEEC--SSCEEESST---TCCSEEEEEEEET-TE-EEEEEEETTE
T ss_pred             cCCccccceEEEEC--CCceEeccc---cCCcccCCccEEc-Cc-EEEEEecCCc
Confidence                   3688888  555544333   45677886 9999 88 8888887764

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.80  E-value=3e-16  Score=122.55  Aligned_cols=232  Identities=10%  Similarity=0.041  Sum_probs=158.6

Q ss_pred             ccCCCcEEEEEEcCCCCEEEE-------eecCCeEEEEEccCCeeeeeee----eeeeceEEEEEecc-CCeEEEeccCC
Q 023822           31 RDYNGRISSMDFHKSSSYLVT-------ASDDESIRLYDVTAATCLKTIN----SKKYGVDLVCFTSH-PTTVIYSSKNG   98 (276)
Q Consensus        31 ~~h~~~v~~~~~~~~~~~l~~-------~~~d~~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~l~~~~~~~   98 (276)
                      ...-....+++|+++++++++       +..++.|.+||..+++......    .+...+..+++.++ ++.++ +..  
T Consensus        14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-~~~--   90 (314)
T 1pjx_A           14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV-ADM--   90 (314)
T ss_dssp             ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE-EET--
T ss_pred             hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEE-EEC--
Confidence            333455689999999988887       6788999999988776543222    14457889999998 55444 443  


Q ss_pred             CCCceEEEEccCCceeee-ecc----cCcceEEEEeccCCCEEEEeeCC---------------CeEEEEeccCceeeee
Q 023822           99 WDESLRLLSLHDNKYLRY-FKG----HHDRVVSLSLCSSKDCFISGSLD---------------RTVLLWDQRAEKCQGL  158 (276)
Q Consensus        99 ~d~~i~~~d~~~~~~~~~-~~~----~~~~i~~~~~~~~~~~l~~~~~d---------------~~i~iwd~~~~~~~~~  158 (276)
                       ...|.+||.. ++.... ...    ....+.+++++++++++++...+               +.|..||.. ++....
T Consensus        91 -~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~  167 (314)
T 1pjx_A           91 -RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV  167 (314)
T ss_dssp             -TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE
T ss_pred             -CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe
Confidence             4579999988 664433 221    12357899999999877776654               578888766 443333


Q ss_pred             E-eecCCCeeEec----CCCcEEEEe-e-CCeEEEEeccc-CCCCCe-eeeeecCCC-CCceEEEECCCCcEEEEeecCC
Q 023822          159 L-RVQGRPAAAYD----DQGLVFAVA-F-GGYIRMFDARK-YEKGPF-DIFSVGGDI-SDANVVKFSNDGRLMLLTTMEG  228 (276)
Q Consensus       159 ~-~~~~~~~~~~~----~~~~~l~~~-~-d~~i~~~d~~~-~~~~~~-~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg  228 (276)
                      . .......++++    |+++.+..+ . ++.|.+||... ++.... .......+. ..+..++++++|+++++...++
T Consensus       168 ~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~  247 (314)
T 1pjx_A          168 DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS  247 (314)
T ss_dssp             EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred             ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCC
Confidence            2 23345678899    998654444 3 78999999862 211111 112223332 4578899999999888777888


Q ss_pred             cEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecC
Q 023822          229 HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRV  271 (276)
Q Consensus       229 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  271 (276)
                      .|.+||..+++.+..+.   .+...+.+++|+|+|+.|+.++.
T Consensus       248 ~i~~~d~~~g~~~~~~~---~~~~~~~~i~~~~dg~~l~v~~~  287 (314)
T 1pjx_A          248 HIEVFGPDGGQPKMRIR---CPFEKPSNLHFKPQTKTIFVTEH  287 (314)
T ss_dssp             EEEEECTTCBSCSEEEE---CSSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEEEcCCCCcEeEEEe---CCCCCceeEEECCCCCEEEEEeC
Confidence            99999988788777776   35578999999999996555443

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.79  E-value=1.1e-15  Score=118.57  Aligned_cols=231  Identities=11%  Similarity=0.069  Sum_probs=155.2

Q ss_pred             eccCCCcEEEEEEcCCC-CEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEc
Q 023822           30 FRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL  108 (276)
Q Consensus        30 ~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~  108 (276)
                      +..+..--.+..|++++ .++++...++.|..||..+++. ..+. ....+.++++.++++.+ ++.    +..|.+||.
T Consensus         8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~-v~~----~~~l~~~d~   80 (297)
T 3g4e_A            8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYV-ATI----GTKFCALNW   80 (297)
T ss_dssp             ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEE-EEE----TTEEEEEET
T ss_pred             eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEE-EEE----CCeEEEEEC
Confidence            33444556789999954 4556666788999999987764 2232 34578999999999944 444    568999999


Q ss_pred             cCCceeeeecc----cCcceEEEEeccCCCEEEEeeC-----------CCeEEEEeccCceeeeeE-eecCCCeeEecCC
Q 023822          109 HDNKYLRYFKG----HHDRVVSLSLCSSKDCFISGSL-----------DRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQ  172 (276)
Q Consensus       109 ~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~  172 (276)
                      .+++.......    ....+..++++|+|+++++...           .+.|..+|.. ++..... .......++|+|+
T Consensus        81 ~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~spd  159 (297)
T 3g4e_A           81 KEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSLD  159 (297)
T ss_dssp             TTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEECTT
T ss_pred             CCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeeccccccceEEcCC
Confidence            87764332221    1245789999999996665432           2344444443 2322222 3334568999999


Q ss_pred             CcEEEEee--CCeEEEEecc--cCCCCCee-eeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecC
Q 023822          173 GLVFAVAF--GGYIRMFDAR--KYEKGPFD-IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK  247 (276)
Q Consensus       173 ~~~l~~~~--d~~i~~~d~~--~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  247 (276)
                      ++.+..+.  ++.|.+||+.  ++...... ...+......+..++++++|++.++...++.|..||..+++.+..+.  
T Consensus       160 g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~--  237 (297)
T 3g4e_A          160 HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK--  237 (297)
T ss_dssp             SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE--
T ss_pred             CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE--
Confidence            97665444  6899999974  32211011 12222333467889999999877777778889999998899998887  


Q ss_pred             CCCCCceEEEEEC-CCCcEEEEecC
Q 023822          248 PVSRNSTLEASFS-PEGMFVISGRV  271 (276)
Q Consensus       248 ~~~~~~v~~~~~s-~~g~~l~~~~~  271 (276)
                       .+...+++++|. |+++.|+.++.
T Consensus       238 -~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          238 -LPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             -CSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             -CCCCCceEEEEeCCCCCEEEEEcC
Confidence             455789999998 88877655544

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.79  E-value=2e-17  Score=130.37  Aligned_cols=227  Identities=11%  Similarity=0.145  Sum_probs=160.6

Q ss_pred             CcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCcee
Q 023822           35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL  114 (276)
Q Consensus        35 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~  114 (276)
                      ..|.+++|++++..++..+.++.++.|   .++....+..+...+.+++|+++++.++++..   ++.|.+||..+++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~---~~~i~~~d~~~~~~~   79 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVF---EGNIFKINPETKEIK   79 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETT---TCEEEEECTTTCCEE
T ss_pred             cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECC---CCEEEEEeCCCCcEE
Confidence            457788999988888777788899999   35556666666667889999999997767766   889999999888765


Q ss_pred             eeecccCcceEEEEeccCCCEEEEeeCC----CeEEEEeccCceeeeeEe----ecCCCeeEecCCCcEEEEeeC-----
Q 023822          115 RYFKGHHDRVVSLSLCSSKDCFISGSLD----RTVLLWDQRAEKCQGLLR----VQGRPAAAYDDQGLVFAVAFG-----  181 (276)
Q Consensus       115 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~d-----  181 (276)
                      .....+...+.+++++|+++++++...+    +.|.+||.++++....+.    ...+..++++|+++++++...     
T Consensus        80 ~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~  159 (333)
T 2dg1_A           80 RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTN  159 (333)
T ss_dssp             EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTB
T ss_pred             EEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccC
Confidence            5444566789999999999987777666    689999988776543331    223567899999998887763     


Q ss_pred             --CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEe-ecCCcEEEEECCC-CcEEEEe-----ecCCCCCC
Q 023822          182 --GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFR-GTLLSTY-----NVKPVSRN  252 (276)
Q Consensus       182 --~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~-~~~~~~~-----~~~~~~~~  252 (276)
                        +.|..+|..+.+.   ..  +......+..++|+|+|+.|+.+ +.++.|.+||..+ ++.+..+     ....+ ..
T Consensus       160 ~~~~l~~~~~~~~~~---~~--~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~~  233 (333)
T 2dg1_A          160 PLGGVYYVSPDFRTV---TP--IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG-HE  233 (333)
T ss_dssp             CCEEEEEECTTSCCE---EE--EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS-SS
T ss_pred             CCceEEEEeCCCCEE---EE--eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC-CC
Confidence              4566666554221   11  11222357889999999866544 5678999999864 4333221     11111 24


Q ss_pred             ceEEEEECCCCcEEEEecCCC
Q 023822          253 STLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       253 ~v~~~~~s~~g~~l~~~~~dg  273 (276)
                      .+..++++++|+++++...++
T Consensus       234 ~~~~i~~d~~G~l~v~~~~~~  254 (333)
T 2dg1_A          234 GPDSCCIDSDDNLYVAMYGQG  254 (333)
T ss_dssp             EEEEEEEBTTCCEEEEEETTT
T ss_pred             CCCceEECCCCCEEEEEcCCC
Confidence            678899999999877765544

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.78  E-value=7.2e-16  Score=121.26  Aligned_cols=222  Identities=10%  Similarity=0.087  Sum_probs=156.8

Q ss_pred             CcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEec-cCCCCCceEEEEccCCce
Q 023822           35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSS-KNGWDESLRLLSLHDNKY  113 (276)
Q Consensus        35 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~~d~~i~~~d~~~~~~  113 (276)
                      .....+.+. +++.+++...++.|.+||..+++.+.++.. ......+++++++ .++++. .   ++.|.+||..+++.
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g-~lyv~~~~---~~~v~~iD~~t~~~  117 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDE-KAYVTQIW---DYRIFIINPKTYEI  117 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETT-EEEEEEBS---CSEEEEEETTTTEE
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCC-eEEEEECC---CCeEEEEECCCCeE
Confidence            345677775 345556666679999999999999888853 3568899999888 555555 5   89999999999987


Q ss_pred             eeeecccC-----cceEEEEeccCCCEEEEee-CCCeEEEEeccCceeeeeEee-cCCCeeEecCCCcEEEEee-C----
Q 023822          114 LRYFKGHH-----DRVVSLSLCSSKDCFISGS-LDRTVLLWDQRAEKCQGLLRV-QGRPAAAYDDQGLVFAVAF-G----  181 (276)
Q Consensus       114 ~~~~~~~~-----~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~-d----  181 (276)
                      ...+....     .....+++ .+++.+++.. .++.|.++|+.+++....+.. .....+.++|++++++++. +    
T Consensus       118 ~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~  196 (328)
T 3dsm_A          118 TGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGS  196 (328)
T ss_dssp             EEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTC
T ss_pred             EEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCC
Confidence            77665332     14566777 3444444433 488999999999988877743 3456899999999888876 3    


Q ss_pred             ------CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceE
Q 023822          182 ------GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTL  255 (276)
Q Consensus       182 ------~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  255 (276)
                            +.|.++|..+.+.  ....... ....+..++|+|+++.|+++..  .|.+||..+++....... ........
T Consensus       197 ~~~~~~~~v~~id~~t~~v--~~~~~~~-~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~-~~~~~~p~  270 (328)
T 3dsm_A          197 PYGYEAPSLYRIDAETFTV--EKQFKFK-LGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFL-EFRDTKYY  270 (328)
T ss_dssp             SSCBCCCEEEEEETTTTEE--EEEEECC-TTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSB-CCCSSCEE
T ss_pred             ccccCCceEEEEECCCCeE--EEEEecC-CCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeee-cCCCCceE
Confidence                  6899999887542  1112221 1236889999999998888765  899999988876422111 01246788


Q ss_pred             EEEECCC-CcEEEEe
Q 023822          256 EASFSPE-GMFVISG  269 (276)
Q Consensus       256 ~~~~s~~-g~~l~~~  269 (276)
                      .++++|+ ++++++.
T Consensus       271 gi~vdp~~g~lyva~  285 (328)
T 3dsm_A          271 GLTVNPNNGEVYVAD  285 (328)
T ss_dssp             EEEECTTTCCEEEEE
T ss_pred             EEEEcCCCCeEEEEc
Confidence            9999995 5555554

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.77  E-value=4.9e-16  Score=119.78  Aligned_cols=196  Identities=10%  Similarity=0.126  Sum_probs=140.9

Q ss_pred             CCCcEEEEEE-cCCCCEEEEeec-CCeEEEEEccCCeeeeeeee-eeeceEEEEEeccCCeEEEeccCCCCCceEEEEcc
Q 023822           33 YNGRISSMDF-HKSSSYLVTASD-DESIRLYDVTAATCLKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH  109 (276)
Q Consensus        33 h~~~v~~~~~-~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~  109 (276)
                      |...+..+++ .++++++++... ++.|++|| .+++.+..+.. +...+..+++.++++.+++...   ++.|.+||..
T Consensus        75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~---~~~i~~~~~~  150 (286)
T 1q7f_A           75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECK---VMRVIIFDQN  150 (286)
T ss_dssp             CBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETT---TTEEEEECTT
T ss_pred             cccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECC---CCEEEEEcCC
Confidence            4467889999 467776666543 78999999 56776665542 3346889999999987666655   7899999964


Q ss_pred             CCceeeeec--ccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEee----cCCCeeEecCCCcEEEEee-CC
Q 023822          110 DNKYLRYFK--GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV----QGRPAAAYDDQGLVFAVAF-GG  182 (276)
Q Consensus       110 ~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~-d~  182 (276)
                       ++.+..+.  .+...+..++++++++++++...++.|++||... +.+..+..    ..+..++++++++++++.. ++
T Consensus       151 -g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~  228 (286)
T 1q7f_A          151 -GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNHNN  228 (286)
T ss_dssp             -SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSS
T ss_pred             -CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCC-CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCC
Confidence             55555553  3445689999999999888878899999999754 44444422    3355799999999888887 54


Q ss_pred             -eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCC
Q 023822          183 -YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG  238 (276)
Q Consensus       183 -~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  238 (276)
                       .|.+||... +  ....+........+..++++|+|+++++ +.++.|++|+....
T Consensus       229 ~~i~~~~~~g-~--~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          229 FNLTIFTQDG-Q--LISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             CEEEEECTTS-C--EEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             EEEEEECCCC-C--EEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence             999999643 2  1222222222334678999999986666 67999999997653

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.76  E-value=8.5e-15  Score=113.30  Aligned_cols=231  Identities=6%  Similarity=0.018  Sum_probs=162.8

Q ss_pred             eccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeee-eeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEc
Q 023822           30 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTI-NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL  108 (276)
Q Consensus        30 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~  108 (276)
                      +..+...+.++++.++|+++++...++.|.+||.. ++..... ......+..+++.+++...++...   ++.|..||.
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~---~~~i~~~~~   85 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENA---ANKIGRITK   85 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETT---TTEEEEECT
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCC---CCeEEEECC
Confidence            34456789999999999987776667899999987 5433221 223456889999999987777665   788999997


Q ss_pred             cCCcee-eeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE-e--ecCCCeeEecCCCcEEEEee-CCe
Q 023822          109 HDNKYL-RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-R--VQGRPAAAYDDQGLVFAVAF-GGY  183 (276)
Q Consensus       109 ~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~--~~~~~~~~~~~~~~~l~~~~-d~~  183 (276)
                      . ++.. ..+......+..+++.++++++++...++.|..||. +++..... .  ...+..++++++++++++.. ++.
T Consensus        86 ~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~  163 (299)
T 2z2n_A           86 K-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNA  163 (299)
T ss_dssp             T-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTE
T ss_pred             C-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCE
Confidence            6 3321 122224457889999999988887777889999998 44433222 1  23356789999998888776 689


Q ss_pred             EEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCC
Q 023822          184 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG  263 (276)
Q Consensus       184 i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  263 (276)
                      |..||. +++   ............+..++++++|+++++...++.|.+||. +++... +... .....+.+++++++|
T Consensus       164 i~~~~~-~g~---~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~-~~~~~~~~i~~~~~g  236 (299)
T 2z2n_A          164 IGRITE-SGD---ITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIP-TPNARPHAITAGAGI  236 (299)
T ss_dssp             EEEECT-TCC---EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECS-STTCCEEEEEECSTT
T ss_pred             EEEEcC-CCc---EEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECC-CCCCCceeEEECCCC
Confidence            999998 433   122223334456789999999997776667889999998 666443 3221 245678999999999


Q ss_pred             cEEEEecCCC
Q 023822          264 MFVISGRVSP  273 (276)
Q Consensus       264 ~~l~~~~~dg  273 (276)
                      ++.++...++
T Consensus       237 ~l~v~~~~~~  246 (299)
T 2z2n_A          237 DLWFTEWGAN  246 (299)
T ss_dssp             CEEEEETTTT
T ss_pred             CEEEeccCCc
Confidence            8776654443

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.76  E-value=4.8e-16  Score=135.21  Aligned_cols=228  Identities=14%  Similarity=0.045  Sum_probs=149.4

Q ss_pred             CCCcEEEEEEcCCCCEEEEeecC-----CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCC--------
Q 023822           33 YNGRISSMDFHKSSSYLVTASDD-----ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW--------   99 (276)
Q Consensus        33 h~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~--------   99 (276)
                      |...+..++|||||++||.++.+     ..|++||+.+++.+.. ..+...+..++|+|+ +.|+.+.....        
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~  238 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA  238 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence            44578899999999999877654     4699999999887543 222333468999999 99888876211        


Q ss_pred             ---CCceEEEEccCCce--eeee--cccCcceEEEEeccCCCEEEEeeCCC-----eEEEEeccCc--eeeeeE--eecC
Q 023822          100 ---DESLRLLSLHDNKY--LRYF--KGHHDRVVSLSLCSSKDCFISGSLDR-----TVLLWDQRAE--KCQGLL--RVQG  163 (276)
Q Consensus       100 ---d~~i~~~d~~~~~~--~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~--~~~~~~--~~~~  163 (276)
                         ...|++|++.++..  ...+  ..+...+..+.|+|||++|+..+.++     .|++||+.++  +....+  +...
T Consensus       239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~  318 (741)
T 1yr2_A          239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA  318 (741)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred             CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence               22489999877652  2222  23334588999999999888777543     8999999876  312333  2222


Q ss_pred             CCeeEecCCCcEEEEee-----CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECC-C
Q 023822          164 RPAAAYDDQGLVFAVAF-----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF-R  237 (276)
Q Consensus       164 ~~~~~~~~~~~~l~~~~-----d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~  237 (276)
                      .... ++|++..|+..+     ++.|.+||+.+.. ... ......+...+..++++ ++.++++...|+..+||.+. +
T Consensus       319 ~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~-~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~  394 (741)
T 1yr2_A          319 QWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGST-PRF-DTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLD  394 (741)
T ss_dssp             CEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSS-CEE-EEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETT
T ss_pred             eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCc-ccc-EEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC
Confidence            2223 347776555554     2569999987642 111 12223344456677777 56777888889887776544 4


Q ss_pred             CcEEEEeecCCCCCCceEEEEECCCCcEEEE
Q 023822          238 GTLLSTYNVKPVSRNSTLEASFSPEGMFVIS  268 (276)
Q Consensus       238 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  268 (276)
                      ++....+..  ...+.+..++++|+++.|+.
T Consensus       395 g~~~~~l~~--~~~~~v~~~~~s~d~~~l~~  423 (741)
T 1yr2_A          395 GKPAGAVSL--PGIGSASGLSGRPGDRHAYL  423 (741)
T ss_dssp             SCEEEECBC--SSSCEEEEEECCBTCSCEEE
T ss_pred             CCceeeccC--CCCeEEEEeecCCCCCEEEE
Confidence            666666552  13577889999999876653

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.75  E-value=1.8e-15  Score=119.03  Aligned_cols=223  Identities=8%  Similarity=-0.026  Sum_probs=157.7

Q ss_pred             cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeee-----eceEEEEEeccCCeEEEeccCC
Q 023822           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK-----YGVDLVCFTSHPTTVIYSSKNG   98 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~~~   98 (276)
                      .+...++.. ......++++++++.+++...++.|.+||..+++....+....     .....+++  ++..++++.. +
T Consensus        74 ~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~-~  149 (328)
T 3dsm_A           74 FKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCW-S  149 (328)
T ss_dssp             CCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEEC-T
T ss_pred             cEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcC-C
Confidence            344444533 4567899999988544444478999999999998877765433     14556777  4566666642 1


Q ss_pred             CCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCC----------CeEEEEeccCceeeeeEee---cCCC
Q 023822           99 WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLD----------RTVLLWDQRAEKCQGLLRV---QGRP  165 (276)
Q Consensus        99 ~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------~~i~iwd~~~~~~~~~~~~---~~~~  165 (276)
                      .++.|.++|+.+++....+... .....++++|++++++++..+          +.|.++|..+.+....+..   ....
T Consensus       150 ~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~  228 (328)
T 3dsm_A          150 YQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPS  228 (328)
T ss_dssp             TCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCE
T ss_pred             CCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCce
Confidence            1789999999999888777643 345788999999977776654          7899999999887776643   2467


Q ss_pred             eeEecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECC-CCcEEEEe----ecCCcEEEEECCCCcE
Q 023822          166 AAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN-DGRLMLLT----TMEGHIHVLDSFRGTL  240 (276)
Q Consensus       166 ~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~----~~dg~i~i~d~~~~~~  240 (276)
                      .++++|+++.+.++.. .|.+||..+.+......  .......+..++++| +++++++.    ..++.|.+||.. ++.
T Consensus       229 ~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~--~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~  304 (328)
T 3dsm_A          229 EVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPF--LEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKL  304 (328)
T ss_dssp             EEEECTTSCEEEEESS-SEEEEETTCSSCCSSCS--BCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCE
T ss_pred             eEEEecCCCEEEEEcc-EEEEEECCCCceeeeee--ecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCE
Confidence            8999999887777655 89999998765421111  111235678899999 55555555    568899999987 999


Q ss_pred             EEEeecCCCCCCceEEEEE
Q 023822          241 LSTYNVKPVSRNSTLEASF  259 (276)
Q Consensus       241 ~~~~~~~~~~~~~v~~~~~  259 (276)
                      +..+..    ......++|
T Consensus       305 ~~~i~~----G~~P~~~~~  319 (328)
T 3dsm_A          305 IDEFYV----GIIPGAFCW  319 (328)
T ss_dssp             EEEEEE----EESEEEEEE
T ss_pred             EEEEEe----ccCcceEEE
Confidence            988872    344455655

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.75  E-value=7.7e-15  Score=118.66  Aligned_cols=231  Identities=11%  Similarity=0.080  Sum_probs=159.0

Q ss_pred             CcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCC--ceEEEEccCCc
Q 023822           35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE--SLRLLSLHDNK  112 (276)
Q Consensus        35 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~--~i~~~d~~~~~  112 (276)
                      .....|+|+++++++++...++.|++||.++++......... ... ++|+++++.++++..   ++  .|.+++...+.
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~~g~~l~~~d~---~~~~~I~~~d~~~~~  205 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTKDKQRVYSIGW---EGTHTVYVYMKASGW  205 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECTTSSEEEEEBS---STTCEEEEEEGGGTT
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEecCCCcEEEEec---CCCceEEEEEcCCCc
Confidence            467899999999977777778999999998877665554433 334 999999999888876   44  78889887665


Q ss_pred             eeeee----cccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeee----E-eecC-C-C-eeEecCC-CcEEEEe
Q 023822          113 YLRYF----KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL----L-RVQG-R-P-AAAYDDQ-GLVFAVA  179 (276)
Q Consensus       113 ~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~----~-~~~~-~-~-~~~~~~~-~~~l~~~  179 (276)
                      ....+    ......+.+++++|++..|+.+..++.|+.||..++.....    . .... . . .++++|+ +.++++.
T Consensus       206 ~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d  285 (409)
T 3hrp_A          206 APTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSD  285 (409)
T ss_dssp             CEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEE
T ss_pred             eeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEe
Confidence            44343    22445678899999555555577789999999987653322    1 1111 1 2 8999995 6666655


Q ss_pred             e-CCeEEEEecccCCCCCeeeeeec-------------CCCCCceEEEECCCCcEEEEee-cCCcEEEEECCCCcEEEEe
Q 023822          180 F-GGYIRMFDARKYEKGPFDIFSVG-------------GDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGTLLSTY  244 (276)
Q Consensus       180 ~-d~~i~~~d~~~~~~~~~~~~~~~-------------~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~  244 (276)
                      . ++.|+.|+....    .....-.             ..-.....++++|+|+++++-. .++.|+.|++.+++.....
T Consensus       286 ~~~~~I~~~~~~g~----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~  361 (409)
T 3hrp_A          286 QNLSSVYKITPDGE----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA  361 (409)
T ss_dssp             TTTTEEEEECTTCC----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEE
T ss_pred             CCCCEEEEEecCCC----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEe
Confidence            5 789999987642    1111100             0123478899999999777777 7889999998787654333


Q ss_pred             ecCC-----------CCCCceEEEEECCCCcEEEEecCCCC
Q 023822          245 NVKP-----------VSRNSTLEASFSPEGMFVISGRVSPF  274 (276)
Q Consensus       245 ~~~~-----------~~~~~v~~~~~s~~g~~l~~~~~dg~  274 (276)
                      ....           ..-.....++++++|.++++-..++.
T Consensus       362 g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~  402 (409)
T 3hrp_A          362 GQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKA  402 (409)
T ss_dssp             ECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCE
T ss_pred             CCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCe
Confidence            2100           01246889999999888777666543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.75  E-value=1.1e-14  Score=116.19  Aligned_cols=239  Identities=10%  Similarity=-0.005  Sum_probs=160.6

Q ss_pred             cccceeeccCCCcEEEEEEcCCCCEEEEee----------cCCeEEEEEccCCeeeeeeeee-------eeceEEEEEec
Q 023822           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTAS----------DDESIRLYDVTAATCLKTINSK-------KYGVDLVCFTS   86 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~   86 (276)
                      .+...++.....+  .++++||+++|+++.          .++.|.+||..+.+.+..+...       ......+.|+|
T Consensus        57 ~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp  134 (373)
T 2mad_H           57 GSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP  134 (373)
T ss_pred             CeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC
Confidence            3344455544444  899999999998885          3678999999988887776542       12345899999


Q ss_pred             cCCeEEEeccCCCCCceEEEEccCCceeee-ecccCcceEEEEeccCC-CEEEEeeCCCeEEEEeccCceeeeeEe----
Q 023822           87 HPTTVIYSSKNGWDESLRLLSLHDNKYLRY-FKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLR----  160 (276)
Q Consensus        87 ~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~----  160 (276)
                      ++++++++.... ++.|.++| .+++.+.. +.. ..   ++.+.|++ +.+++.+.||++.++|. +++......    
T Consensus       135 DG~~l~v~n~~~-~~~v~viD-~t~~~~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~  207 (373)
T 2mad_H          135 NNADLLFFQFAA-GPAVGLVV-QGGSSDDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAM  207 (373)
T ss_pred             CCCEEEEEecCC-CCeEEEEE-CCCCEEeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEecccc
Confidence            999999987421 47899999 99988777 542 22   24455655 45677778999999999 776653322    


Q ss_pred             -ecCC---CeeEecCC-CcEEEEeeCCeEEEEecccCCCCCeeeeeecC--------CCCCceEEEECCCCcEEEEeec-
Q 023822          161 -VQGR---PAAAYDDQ-GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGG--------DISDANVVKFSNDGRLMLLTTM-  226 (276)
Q Consensus       161 -~~~~---~~~~~~~~-~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~-  226 (276)
                       ....   ....+.++ +.++..+.++.+.+.|+..........+....        .......++++|+++.++++.. 
T Consensus       208 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~  287 (373)
T 2mad_H          208 LTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSE  287 (373)
T ss_pred             ccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEecc
Confidence             1111   12234444 34555556789999998754321111111110        1122344789999988877643 


Q ss_pred             ---------CCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCc-EEEEec-CCCCC
Q 023822          227 ---------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM-FVISGR-VSPFS  275 (276)
Q Consensus       227 ---------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~-~dg~v  275 (276)
                               ++.|.++|+.+++.+..+.    .......++|+|||+ +++++. .++.|
T Consensus       288 ~~~~~~~~~~~~V~VID~~t~~vv~~i~----~g~~p~~i~~s~Dg~~~l~v~~~~~~~V  343 (373)
T 2mad_H          288 QSAWKLHAAAKEVTSVTGLVGQTSSQIS----LGHDVDAISVAQDGGPDLYALSAGTEVL  343 (373)
T ss_pred             CCcccccCCCCeEEEEECCCCEEEEEEE----CCCCcCeEEECCCCCeEEEEEcCCCCeE
Confidence                     3579999999999999987    344688999999999 777776 36654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.74  E-value=4.6e-14  Score=110.87  Aligned_cols=223  Identities=12%  Similarity=0.048  Sum_probs=150.7

Q ss_pred             cEEEEEEcCCCC-EEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCcee
Q 023822           36 RISSMDFHKSSS-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL  114 (276)
Q Consensus        36 ~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~  114 (276)
                      -..+++|+|++. ++++...++.|..||..+++.. .+. ....+.++.+.++++.++.. .   + .|.+||..+++..
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~---~-gl~~~d~~~g~~~  122 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-D---D-GLFLRDTATGVLT  122 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-T---T-EEEEEETTTCCEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-C---C-CEEEEECCCCcEE
Confidence            456889999754 5566667889999999877643 232 23578999999998876654 2   4 4999999887754


Q ss_pred             eeecc----cCcceEEEEeccCCCEEEEeeC------CCeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee--C
Q 023822          115 RYFKG----HHDRVVSLSLCSSKDCFISGSL------DRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF--G  181 (276)
Q Consensus       115 ~~~~~----~~~~i~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~--d  181 (276)
                      .....    ....+.+++++|+|+++++...      .+.|..+|  +++..... .......++|+|+++.+..+.  +
T Consensus       123 ~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~  200 (326)
T 2ghs_A          123 LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKV  200 (326)
T ss_dssp             EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTT
T ss_pred             EEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCC
Confidence            32221    1246889999999997665442      24566666  44433322 223445789999997665544  6


Q ss_pred             CeEEEEecc--cC-CCCCee-eeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEE
Q 023822          182 GYIRMFDAR--KY-EKGPFD-IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA  257 (276)
Q Consensus       182 ~~i~~~d~~--~~-~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~  257 (276)
                      +.|.+||+.  ++ ...... ..........+..++++++|+++++...++.|.+||. +++.+..+.   .+...+.++
T Consensus       201 ~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~---~~~~~~~~~  276 (326)
T 2ghs_A          201 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE---VPGKQTTCP  276 (326)
T ss_dssp             CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE---CSCSBEEEE
T ss_pred             CEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEE---CCCCCcEEE
Confidence            899999986  43 221111 2222223345678999999987777666788999997 677777776   355679999


Q ss_pred             EEC-CCCcEEEEecC
Q 023822          258 SFS-PEGMFVISGRV  271 (276)
Q Consensus       258 ~~s-~~g~~l~~~~~  271 (276)
                      +|+ ++++.|+.++.
T Consensus       277 af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          277 AFIGPDASRLLVTSA  291 (326)
T ss_dssp             EEESTTSCEEEEEEB
T ss_pred             EEecCCCCEEEEEec
Confidence            998 89877655443

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.74  E-value=5e-16  Score=122.25  Aligned_cols=196  Identities=11%  Similarity=0.070  Sum_probs=144.0

Q ss_pred             cCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCe-eeeeee---------eeeeceEEEEEec-cCCeEEEec-cCCC
Q 023822           32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT-CLKTIN---------SKKYGVDLVCFTS-HPTTVIYSS-KNGW   99 (276)
Q Consensus        32 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~---------~~~~~v~~~~~~~-~~~~l~~~~-~~~~   99 (276)
                      ++......++++|+|+++++...++.|++||..... .+..+.         .+-.....++++| ++..+++.+ .   
T Consensus        88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~---  164 (329)
T 3fvz_A           88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC---  164 (329)
T ss_dssp             TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS---
T ss_pred             CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC---
Confidence            344678899999999988888889999999975432 444442         2334688999999 676666664 4   


Q ss_pred             CCceEEEEccCCceeeeecc----------cCcceEEEEeccC-CCEEEEeeCCCeEEEEeccCceeeeeEee----cCC
Q 023822          100 DESLRLLSLHDNKYLRYFKG----------HHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRV----QGR  164 (276)
Q Consensus       100 d~~i~~~d~~~~~~~~~~~~----------~~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~~~  164 (276)
                      ++.|++|+ .+++.+..+..          +-.....++++|+ ++++++...+++|++||..+++.+..+..    ..+
T Consensus       165 ~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~  243 (329)
T 3fvz_A          165 NSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNV  243 (329)
T ss_dssp             CCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCE
T ss_pred             CCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCc
Confidence            88999999 56666666532          2234789999998 77777777889999999998887777632    234


Q ss_pred             CeeEecCCCcEEEEee--------CCeEEEEecccCCCCCeeeeee---cCCCCCceEEEECCCCcEEEEeecCCcEEEE
Q 023822          165 PAAAYDDQGLVFAVAF--------GGYIRMFDARKYEKGPFDIFSV---GGDISDANVVKFSNDGRLMLLTTMEGHIHVL  233 (276)
Q Consensus       165 ~~~~~~~~~~~l~~~~--------d~~i~~~d~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  233 (276)
                      ..++++| +.+++...        +..|++||..+++.    +..+   ..+...+..++++|+|.++++...++.|++|
T Consensus       244 ~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~----~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~  318 (329)
T 3fvz_A          244 FAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEI----IDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKF  318 (329)
T ss_dssp             EEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCE----EEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEE
T ss_pred             ceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeE----EEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEE
Confidence            5778888 44443332        35899999887653    2232   3455678999999999888888889999999


Q ss_pred             ECC
Q 023822          234 DSF  236 (276)
Q Consensus       234 d~~  236 (276)
                      ++.
T Consensus       319 ~~~  321 (329)
T 3fvz_A          319 TLT  321 (329)
T ss_dssp             EEE
T ss_pred             eCC
Confidence            975

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.74  E-value=9.2e-16  Score=121.29  Aligned_cols=243  Identities=12%  Similarity=0.051  Sum_probs=165.6

Q ss_pred             ccccceeeccCCCcEEEEEEcCCCCEEEEee----------cCCeEEEEEccCCeeeeeeeeee-------eceEEEEEe
Q 023822           23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTAS----------DDESIRLYDVTAATCLKTINSKK-------YGVDLVCFT   85 (276)
Q Consensus        23 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~-------~~v~~~~~~   85 (276)
                      +.+.+.++.....+ . ++++|||++|+++.          .++.|.+||..+++.+.++....       .....+.++
T Consensus        68 t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~s  145 (386)
T 3sjl_D           68 AGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLT  145 (386)
T ss_dssp             TTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEEC
T ss_pred             CCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEc
Confidence            34555555544555 4 99999999988775          36789999999999888875432       245679999


Q ss_pred             ccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccC-ceeeeeE----e
Q 023822           86 SHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA-EKCQGLL----R  160 (276)
Q Consensus        86 ~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~----~  160 (276)
                      |++++++++... .++.|.++|+.+++.+.++... +.  ...+....+.+++.+.||++.+.++.. ++.....    .
T Consensus       146 pDGk~lyVan~~-~~~~VsVID~~t~~vv~tI~v~-g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~  221 (386)
T 3sjl_D          146 PDGKTLLFYQFS-PAPAVGVVDLEGKAFKRMLDVP-DC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH  221 (386)
T ss_dssp             TTSSEEEEEECS-SSCEEEEEETTTTEEEEEEECC-SE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS
T ss_pred             CCCCEEEEEEcC-CCCeEEEEECCCCcEEEEEECC-Cc--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceec
Confidence            999999988641 1689999999999998887532 21  222333445677888899988888876 4432211    1


Q ss_pred             ec--CC-CeeEe-cCCCcEEEEeeCCeEEEEecccCCCCCeeeeee--------cCCCCCceEEEECCCCcEEEEeec--
Q 023822          161 VQ--GR-PAAAY-DDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSV--------GGDISDANVVKFSNDGRLMLLTTM--  226 (276)
Q Consensus       161 ~~--~~-~~~~~-~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~l~~~~~--  226 (276)
                      ..  .+ ....| .++|+++..+.++.+++.|.............+        .-.......++++|+++.++....  
T Consensus       222 ~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~  301 (386)
T 3sjl_D          222 PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQR  301 (386)
T ss_dssp             CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred             cccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccc
Confidence            00  01 12345 478888888889999999997644211111110        011234456888999988887643  


Q ss_pred             --------CCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCc-EEEEe-cCCCCC
Q 023822          227 --------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM-FVISG-RVSPFS  275 (276)
Q Consensus       227 --------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~-~~dg~v  275 (276)
                              .+.|.++|+.+++.+..+.    ....+.++++++|++ +|+++ ..++.|
T Consensus       302 ~~~~hk~~~~~V~viD~~t~kv~~~i~----vg~~~~~lavs~D~~~~ly~tn~~~~~V  356 (386)
T 3sjl_D          302 DEWRHKTASRFVVVLDAKTGERLAKFE----MGHEIDSINVSQDEKPLLYALSTGDKTL  356 (386)
T ss_dssp             CTTCTTSCEEEEEEEETTTCCEEEEEE----EEEEECEEEECSSSSCEEEEEETTTTEE
T ss_pred             cccccCCCCCEEEEEECCCCeEEEEEE----CCCCcceEEECCCCCeEEEEEcCCCCeE
Confidence                    2579999999999999998    345788999999997 66664 446654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.74  E-value=1.2e-14  Score=121.66  Aligned_cols=237  Identities=10%  Similarity=0.064  Sum_probs=164.9

Q ss_pred             ccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEcc--CCeeeeeeeeeeeceEEEEEe----ccCCeEEEeccCC
Q 023822           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVT--AATCLKTINSKKYGVDLVCFT----SHPTTVIYSSKNG   98 (276)
Q Consensus        25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~~~   98 (276)
                      +.+.++.. ...+..+.|+|||+++++++.|+.|.+||+.  +++.+.++.... ....++|+    |++++++++... 
T Consensus       188 ~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~-  264 (567)
T 1qks_A          188 EIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYW-  264 (567)
T ss_dssp             CEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEE-
T ss_pred             eEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEcc-
Confidence            34444443 2356789999999999999999999999995  778887776544 46789999    699999998873 


Q ss_pred             CCCceEEEEccCCceeeeecc----------cCc-ceEEEEeccCCC-EEEEeeCCCeEEEEeccCceeeeeE--e-ecC
Q 023822           99 WDESLRLLSLHDNKYLRYFKG----------HHD-RVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLL--R-VQG  163 (276)
Q Consensus        99 ~d~~i~~~d~~~~~~~~~~~~----------~~~-~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~--~-~~~  163 (276)
                       ++.+.++|..+.+.+..+..          |.. .+..+..++++. +++....+|.|.++|....+.....  . ...
T Consensus       265 -~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~  343 (567)
T 1qks_A          265 -PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERF  343 (567)
T ss_dssp             -TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSS
T ss_pred             -CCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeecccc
Confidence             79999999999988876642          212 577888888766 4555566799999998875433222  1 122


Q ss_pred             CCeeEecCCCcEEEEee--CCeEEEEecccCCCCCeeeeee-cCCCCCceEEE-ECCCCcEE-EEee-cCCcEEEEECCC
Q 023822          164 RPAAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDIFSV-GGDISDANVVK-FSNDGRLM-LLTT-MEGHIHVLDSFR  237 (276)
Q Consensus       164 ~~~~~~~~~~~~l~~~~--d~~i~~~d~~~~~~~~~~~~~~-~~~~~~i~~~~-~~~~~~~l-~~~~-~dg~i~i~d~~~  237 (276)
                      ...+.|+|+++++.++.  ++.|.++|+.+++.  ...... .....+-..+. ++|++..+ +++. .++.|.++|..+
T Consensus       344 ~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl--~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~  421 (567)
T 1qks_A          344 LHDGGLDGSHRYFITAANARNKLVVIDTKEGKL--VAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDP  421 (567)
T ss_dssp             EEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE--EEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             ccCceECCCCCEEEEEeCCCCeEEEEECCCCcE--EEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCC
Confidence            33678999998876665  79999999998653  112222 11111212233 57875444 4443 468999999987


Q ss_pred             -------CcEEEEeecCCCCCCceEEEEECCCCcEEEEec
Q 023822          238 -------GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGR  270 (276)
Q Consensus       238 -------~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  270 (276)
                             .+.++++..   ....-..+..+|++++|.+..
T Consensus       422 ~~~~~~~~kvv~~i~~---~g~g~~~i~~~p~~~~l~v~~  458 (567)
T 1qks_A          422 EGHPDNAWKILDSFPA---LGGGSLFIKTHPNSQYLYVDA  458 (567)
T ss_dssp             TTCTTTBTSEEEEEEC---SCSCCCCEECCTTCSEEEEEC
T ss_pred             CCCccccCEEEEEEec---CCCCCEEEEeCCCCCeEEEec
Confidence                   667787773   223334477899999988755

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.74  E-value=2.8e-14  Score=110.39  Aligned_cols=227  Identities=9%  Similarity=0.089  Sum_probs=160.5

Q ss_pred             CCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeee--eeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccC
Q 023822           33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN--SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD  110 (276)
Q Consensus        33 h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~  110 (276)
                      +...+.++++.+++.++++...++.|..||.. ++. ..+.  .....+..+++.+++..+++...   ++.|..||. +
T Consensus        55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~---~~~i~~~d~-~  128 (299)
T 2z2n_A           55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMN---GNRIGRITD-D  128 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETT---TTEEEEECT-T
T ss_pred             ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecC---CceEEEECC-C
Confidence            45678999999999888877778899999976 332 2222  23446889999998887776655   788999998 5


Q ss_pred             Cceeee-ecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeee-E--eecCCCeeEecCCCcEEEEee-CCeEE
Q 023822          111 NKYLRY-FKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL-L--RVQGRPAAAYDDQGLVFAVAF-GGYIR  185 (276)
Q Consensus       111 ~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~--~~~~~~~~~~~~~~~~l~~~~-d~~i~  185 (276)
                      ++.... .......+..+++.++++++++...++.|..||. +++.... .  ....+..+++++++.++++.. ++.|.
T Consensus       129 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~  207 (299)
T 2z2n_A          129 GKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIG  207 (299)
T ss_dssp             CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred             CCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEE
Confidence            544332 2334456899999999988777777789999998 5554332 1  122345789999998877775 78999


Q ss_pred             EEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcE
Q 023822          186 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF  265 (276)
Q Consensus       186 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  265 (276)
                      +||. +++   ............+..++++++|+++++...++.|..||. +++ +..+... .+...+.++++ ++|++
T Consensus       208 ~~~~-~g~---~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~-~~~~~~~~i~~-~~g~l  279 (299)
T 2z2n_A          208 RITT-SGE---ITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQ-IKSAEPHGICF-DGETI  279 (299)
T ss_dssp             EECT-TCC---EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECS-SSSCCEEEEEE-CSSCE
T ss_pred             EECC-CCc---EEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCC-CCCCccceEEe-cCCCE
Confidence            9998 433   222333334567889999999996666657789999998 554 3344321 24567899999 99988


Q ss_pred             EEEecCCCC
Q 023822          266 VISGRVSPF  274 (276)
Q Consensus       266 l~~~~~dg~  274 (276)
                      .++...++.
T Consensus       280 ~v~~~~~~l  288 (299)
T 2z2n_A          280 WFAMECDKI  288 (299)
T ss_dssp             EEEETTTEE
T ss_pred             EEEecCCcE
Confidence            777655543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.74  E-value=7.7e-15  Score=114.23  Aligned_cols=235  Identities=9%  Similarity=0.015  Sum_probs=158.5

Q ss_pred             cceeeccCCCcEEEEEEcCCCC-EEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceE
Q 023822           26 VGMSFRDYNGRISSMDFHKSSS-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (276)
Q Consensus        26 ~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~  104 (276)
                      ....+..+........|+|+++ ++++...++.|..|+. +++ ...+..+...+..+++.++++.+++...   ++.|.
T Consensus        36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~---~~~v~  110 (305)
T 3dr2_A           36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHG---RRAIT  110 (305)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETT---TTEEE
T ss_pred             ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECC---CCEEE
Confidence            3444555566778999999998 5667777899999997 454 3445555667899999999986655544   67899


Q ss_pred             EEEccCCceeeeeccc----CcceEEEEeccCCCEEEE----eeC-------------CCeEEEEeccCceeeeeEeecC
Q 023822          105 LLSLHDNKYLRYFKGH----HDRVVSLSLCSSKDCFIS----GSL-------------DRTVLLWDQRAEKCQGLLRVQG  163 (276)
Q Consensus       105 ~~d~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~----~~~-------------d~~i~iwd~~~~~~~~~~~~~~  163 (276)
                      .|+.. ++........    ...+..+++.|+|+++++    +..             .+.|..||..+++.........
T Consensus       111 ~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~  189 (305)
T 3dr2_A          111 RSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLDH  189 (305)
T ss_dssp             EECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEEESS
T ss_pred             EECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEecCCC
Confidence            99976 5432221111    134678999999998876    332             2568888876665433323344


Q ss_pred             CCeeEecCCCcEEEEee-C------CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECC
Q 023822          164 RPAAAYDDQGLVFAVAF-G------GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF  236 (276)
Q Consensus       164 ~~~~~~~~~~~~l~~~~-d------~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  236 (276)
                      ...++|+|+++.|..+. .      +.|.+|++..........+ .......+..++++++|++. ++..+ .|.+|+. 
T Consensus       190 p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~-~~~~~~~pdgi~~d~~G~lw-v~~~~-gv~~~~~-  265 (305)
T 3dr2_A          190 PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHF-ASVPDGLPDGFCVDRGGWLW-SSSGT-GVCVFDS-  265 (305)
T ss_dssp             EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEE-ECCSSSCCCSEEECTTSCEE-ECCSS-EEEEECT-
T ss_pred             CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEE-EECCCCCCCeEEECCCCCEE-EecCC-cEEEECC-
Confidence            55789999998665554 3      6899999875321000111 11123446779999999944 44444 4999997 


Q ss_pred             CCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCC
Q 023822          237 RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPF  274 (276)
Q Consensus       237 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~  274 (276)
                      +++.+..+..   .. .+.+++|+|+++.|+.++.++.
T Consensus       266 ~g~~~~~~~~---~~-~~~~~~f~~d~~~L~it~~~~l  299 (305)
T 3dr2_A          266 DGQLLGHIPT---PG-TASNCTFDQAQQRLFITGGPCL  299 (305)
T ss_dssp             TSCEEEEEEC---SS-CCCEEEECTTSCEEEEEETTEE
T ss_pred             CCCEEEEEEC---CC-ceeEEEEeCCCCEEEEEcCCeE
Confidence            6788877772   33 5889999999988888777654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.73  E-value=1e-14  Score=122.14  Aligned_cols=223  Identities=12%  Similarity=0.098  Sum_probs=158.1

Q ss_pred             CCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEcc--CCceeeeecccC
Q 023822           44 KSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH--DNKYLRYFKGHH  121 (276)
Q Consensus        44 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~--~~~~~~~~~~~~  121 (276)
                      +.+.++++...++.|.++|..+++.+.++.... .+..+.|+|+++++++++.   ++.|.+||+.  +++.+..+....
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~---dg~V~viD~~~~t~~~v~~i~~G~  240 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGR---DGKVNMIDLWMKEPTTVAEIKIGS  240 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEET---TSEEEEEETTSSSCCEEEEEECCS
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCCCCEEEEEcC---CCeEEEEECCCCCCcEeEEEecCC
Confidence            444566777788999999999999988886543 5678999999999999887   8999999996  777777776433


Q ss_pred             cceEEEEec----cCCCEEEEeeC-CCeEEEEeccCceeeeeEeec-------------CCCeeEecCCCcEEEEee--C
Q 023822          122 DRVVSLSLC----SSKDCFISGSL-DRTVLLWDQRAEKCQGLLRVQ-------------GRPAAAYDDQGLVFAVAF--G  181 (276)
Q Consensus       122 ~~i~~~~~~----~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~~--d  181 (276)
                       ....++|+    |+|++++++.. +++|.++|..+.+.+..+...             .+..+..++++..++...  +
T Consensus       241 -~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~  319 (567)
T 1qks_A          241 -EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET  319 (567)
T ss_dssp             -EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             -CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCC
Confidence             45789999    69998777665 589999999998888776321             223566777765555554  6


Q ss_pred             CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEee-cCCcEEEEECCCCcEEEEeec-C-CCCCCceEEEE
Q 023822          182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGTLLSTYNV-K-PVSRNSTLEAS  258 (276)
Q Consensus       182 ~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~-~-~~~~~~v~~~~  258 (276)
                      |.|.++|....+.  .....+. .......+.|+|+|++++++. .++.|.++|+.+++.+..+.. . ..|.+.-..+ 
T Consensus       320 g~v~~vd~~~~~~--~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-  395 (567)
T 1qks_A          320 GKILLVDYTDLNN--LKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-  395 (567)
T ss_dssp             TEEEEEETTCSSE--EEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-
T ss_pred             CeEEEEecCCCcc--ceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-
Confidence            9999999876432  1122221 223466789999999987765 578999999999998877763 1 1132222122 


Q ss_pred             ECCCCcE-EEEec-CCCCC
Q 023822          259 FSPEGMF-VISGR-VSPFS  275 (276)
Q Consensus       259 ~s~~g~~-l~~~~-~dg~v  275 (276)
                      ++|++.. .+++. .++.|
T Consensus       396 ~~p~~g~v~~t~~~g~~~V  414 (567)
T 1qks_A          396 VHPTFGPVWATSHMGDDSV  414 (567)
T ss_dssp             EETTTEEEEEEEBSSSSEE
T ss_pred             ECCCCCcEEEeCCCCCCeE
Confidence            5787544 44432 33444

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.72  E-value=9.6e-15  Score=113.15  Aligned_cols=187  Identities=10%  Similarity=0.047  Sum_probs=135.3

Q ss_pred             eeeeeeeeeceEEEEEeccCC-eEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEE
Q 023822           69 LKTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLL  147 (276)
Q Consensus        69 ~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i  147 (276)
                      +..+..+.....+++|+|+++ .+++...   ++.|..|+..++  ...+..+...+.+++++|+++++++...++.|.+
T Consensus        20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~---~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~   94 (296)
T 3e5z_A           20 ARRLADGFTWTEGPVYVPARSAVIFSDVR---QNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLER   94 (296)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEEGG---GTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred             EEEEecCCccccCCeEeCCCCEEEEEeCC---CCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEE
Confidence            334444445677899999998 5566665   899999999877  5666667778999999999998877777789999


Q ss_pred             EeccCceeeeeEe------ecCCCeeEecCCCcEEEEe----e--------------CCeEEEEecccCCCCCeeeeeec
Q 023822          148 WDQRAEKCQGLLR------VQGRPAAAYDDQGLVFAVA----F--------------GGYIRMFDARKYEKGPFDIFSVG  203 (276)
Q Consensus       148 wd~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~----~--------------d~~i~~~d~~~~~~~~~~~~~~~  203 (276)
                      ||..+++......      ...+..++++|+|+++++.    .              .+.|..++.. ++     .....
T Consensus        95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-----~~~~~  168 (296)
T 3e5z_A           95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-----LSAPI  168 (296)
T ss_dssp             ECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-----EEEEE
T ss_pred             EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-----EEEee
Confidence            9997776544331      2245679999999988862    2              2456666654 22     22233


Q ss_pred             CCCCCceEEEECCCCcEEEEeecCCcEEEEECC-CCcE---EEEeecCCCCCCceEEEEECCCCcEEEEe
Q 023822          204 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF-RGTL---LSTYNVKPVSRNSTLEASFSPEGMFVISG  269 (276)
Q Consensus       204 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~---~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  269 (276)
                      .+......++|+|+|+.|++.+.++.|.+|++. +++.   ...+.   .+...+..++++++|+++++.
T Consensus       169 ~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~---~~~~~p~~i~~d~~G~l~v~~  235 (296)
T 3e5z_A          169 RDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFT---VEPGKTDGLRVDAGGLIWASA  235 (296)
T ss_dssp             CCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEEC---CSSSCCCSEEEBTTSCEEEEE
T ss_pred             cCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEee---CCCCCCCeEEECCCCCEEEEc
Confidence            445567899999999988777778999999987 5555   33332   345667789999999877665

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.71  E-value=3e-15  Score=114.32  Aligned_cols=198  Identities=8%  Similarity=0.023  Sum_probs=141.8

Q ss_pred             CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeee-eeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCc
Q 023822           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK  112 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~  112 (276)
                      ...+.+++++++++++++.. ++.|.+||....... .+. .....+..+++.++++.+++...   ++.|.+|+..+..
T Consensus        66 ~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~---~~~i~~~~~~~~~  140 (270)
T 1rwi_B           66 LYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRG---NNRVVKLAAGSKT  140 (270)
T ss_dssp             CCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEGG---GTEEEEECTTCCS
T ss_pred             cCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-eeecCCcCCCcceEECCCCCEEEEECC---CCEEEEEECCCce
Confidence            35678899999998666655 889999998755432 232 22246889999999986666555   7889999765554


Q ss_pred             eeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-CCeEEEEec
Q 023822          113 YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDA  189 (276)
Q Consensus       113 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~  189 (276)
                      ...........+..++++++++++++...++.|.+||..........  .......+++++++.++++.. ++.|.+||.
T Consensus       141 ~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~  220 (270)
T 1rwi_B          141 QTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLA  220 (270)
T ss_dssp             CEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECT
T ss_pred             eEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcC
Confidence            33322233346788999999997777777889999998876544322  223456899999998777776 789999998


Q ss_pred             ccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcE
Q 023822          190 RKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL  240 (276)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  240 (276)
                      .....    ......+...+.+++++|+|+++++...++.|++++....+.
T Consensus       221 ~~~~~----~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          221 GSTTS----TVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             TCSCC----EECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred             CCCcc----eeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence            65332    111122335688999999999888888899999999865543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.69  E-value=3e-13  Score=104.58  Aligned_cols=229  Identities=7%  Similarity=0.007  Sum_probs=160.4

Q ss_pred             cCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeee-eeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccC
Q 023822           32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKT-INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD  110 (276)
Q Consensus        32 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~  110 (276)
                      .....+.++++.++|++.++...++.|.+||.. ++.... +......+..+++.+++...++...   ++.|..+|.. 
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~---~~~v~~~d~~-   91 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENG---ANKIGKLSKK-   91 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETT---TTEEEEECTT-
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecC---CCeEEEECCC-
Confidence            345678999999999988877778999999987 554331 2222356889999998887776654   7889999987 


Q ss_pred             Cceee-eecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeee-Ee--ecCCCeeEecCCCcEEEEee-CCeEE
Q 023822          111 NKYLR-YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL-LR--VQGRPAAAYDDQGLVFAVAF-GGYIR  185 (276)
Q Consensus       111 ~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~--~~~~~~~~~~~~~~~l~~~~-d~~i~  185 (276)
                      ++... .+......+..+++.++++++++...++.|..+|.. ++.... +.  ......++++++++++++.. ++.|.
T Consensus        92 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~  170 (300)
T 2qc5_A           92 GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIG  170 (300)
T ss_dssp             SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred             CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEE
Confidence            55432 222234668899999999888777778899999987 444322 11  23355788999999777766 68899


Q ss_pred             EEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcE
Q 023822          186 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF  265 (276)
Q Consensus       186 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  265 (276)
                      .||. .++   ...+........+..++++++|+++++....+.|.+|+. +++...... . .....+.+++++++|++
T Consensus       171 ~~~~-~g~---~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~-~-~~~~~~~~i~~d~~g~l  243 (300)
T 2qc5_A          171 RITN-TGK---LEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDI-P-TPNARPHAITAGKNSEI  243 (300)
T ss_dssp             EECT-TCC---EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEEC-S-STTCCEEEEEECSTTCE
T ss_pred             EECC-CCc---EEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEEC-C-CCCCCceEEEECCCCCE
Confidence            9998 322   122333334456889999999987776666778999997 555443321 1 24567889999999987


Q ss_pred             EEEecCCC
Q 023822          266 VISGRVSP  273 (276)
Q Consensus       266 l~~~~~dg  273 (276)
                      .++...++
T Consensus       244 ~v~~~~~~  251 (300)
T 2qc5_A          244 WFTEWGAN  251 (300)
T ss_dssp             EEEETTTT
T ss_pred             EEeccCCC
Confidence            66654433

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.68  E-value=1e-14  Score=117.32  Aligned_cols=226  Identities=8%  Similarity=-0.037  Sum_probs=151.6

Q ss_pred             CCCCEEEEeecC-----CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccC-------CCCCceEEEEccCC
Q 023822           44 KSSSYLVTASDD-----ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN-------GWDESLRLLSLHDN  111 (276)
Q Consensus        44 ~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-------~~d~~i~~~d~~~~  111 (276)
                      ++++.+++....     +.|.++|..+++.+.++.....+  .+.++|++++++++...       ..++.|.++|..++
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            466766665542     69999999999999999876666  89999999999888620       01678999999999


Q ss_pred             ceeeeeccc-------CcceEEEEeccCCCEEEEeeC--CCeEEEEeccCceeeeeEeecC---------CCeeEecCCC
Q 023822          112 KYLRYFKGH-------HDRVVSLSLCSSKDCFISGSL--DRTVLLWDQRAEKCQGLLRVQG---------RPAAAYDDQG  173 (276)
Q Consensus       112 ~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~---------~~~~~~~~~~  173 (276)
                      +.+..+.-.       ......+.|+||+++++++..  ++.|.+.|+.+.+.+..+....         ...+.+++++
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG  239 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDG  239 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTS
T ss_pred             cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCC
Confidence            988776421       123467899999999888764  5789999999998877764321         1123344444


Q ss_pred             cEEEEee--------------------------------------CCeEEEEecccCCCCCeeeeeec--------CCCC
Q 023822          174 LVFAVAF--------------------------------------GGYIRMFDARKYEKGPFDIFSVG--------GDIS  207 (276)
Q Consensus       174 ~~l~~~~--------------------------------------d~~i~~~d~~~~~~~~~~~~~~~--------~~~~  207 (276)
                      ++++...                                      .+.+.+.|...........+...        ....
T Consensus       240 ~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~  319 (426)
T 3c75_H          240 SLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPG  319 (426)
T ss_dssp             SEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEEC
T ss_pred             CEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccC
Confidence            4333332                                      23344444432110000000000        0011


Q ss_pred             CceEEEECCCCcEEEEeec----------CCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCc-EEEEecC-CCCC
Q 023822          208 DANVVKFSNDGRLMLLTTM----------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM-FVISGRV-SPFS  275 (276)
Q Consensus       208 ~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~-dg~v  275 (276)
                      ....++++|+++.+++...          ++.|.++|..+.+.+..+.    .......++|+|||+ +++++.. ++.|
T Consensus       320 g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~----vg~~P~gia~spDg~~~lyv~n~~s~~V  395 (426)
T 3c75_H          320 GWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIE----LGHEIDSINVSQDAEPLLYALSAGTQTL  395 (426)
T ss_dssp             SSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE----EEEEECEEEECCSSSCEEEEEETTTTEE
T ss_pred             CceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEE----CCCCcCeEEEccCCCEEEEEEcCCCCeE
Confidence            2223789999887777642          3579999999999999997    334688999999999 8888773 6655

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.67  E-value=4.6e-14  Score=122.24  Aligned_cols=224  Identities=7%  Similarity=0.004  Sum_probs=147.2

Q ss_pred             CCCCEEEEeecCC-----eEEEEEccCCeeeeeee------eeeeceEEEEEeccCCeEEEeccCCCC--CceEEEEccC
Q 023822           44 KSSSYLVTASDDE-----SIRLYDVTAATCLKTIN------SKKYGVDLVCFTSHPTTVIYSSKNGWD--ESLRLLSLHD  110 (276)
Q Consensus        44 ~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~~~~d--~~i~~~d~~~  110 (276)
                      |+|++++....++     .+.+.+...++....+.      .+...+..++|+||+++++.+...+.+  ..|++||+.+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t  160 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG  160 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence            8898887654332     34555544444322221      233468899999999999987652111  2899999999


Q ss_pred             CceeeeecccCcceEEEEeccCCCEEEEeeCCCe----------------EEEEeccCceee--eeEeec--C--CCeeE
Q 023822          111 NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRT----------------VLLWDQRAEKCQ--GLLRVQ--G--RPAAA  168 (276)
Q Consensus       111 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~----------------i~iwd~~~~~~~--~~~~~~--~--~~~~~  168 (276)
                      ++.......+ ..+..++|+||++.|+.++.++.                |++|++.+++..  ..+...  .  ...+.
T Consensus       161 g~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~  239 (710)
T 2xdw_A          161 AKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE  239 (710)
T ss_dssp             TEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEE
T ss_pred             CCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEE
Confidence            9876533222 23678999999999998887765                999999887632  222221  1  34789


Q ss_pred             ecCCCcEEEEee------CCeEEEEeccc------CCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecC----CcEEE
Q 023822          169 YDDQGLVFAVAF------GGYIRMFDARK------YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME----GHIHV  232 (276)
Q Consensus       169 ~~~~~~~l~~~~------d~~i~~~d~~~------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i  232 (276)
                      |+|++++|+...      +..|++||+.+      +...   ...+..+...+.. .|+|+|+.|+..+..    +.|.+
T Consensus       240 ~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~---~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~  315 (710)
T 2xdw_A          240 LSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILK---WVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLIN  315 (710)
T ss_dssp             ECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC---CEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEE
T ss_pred             EcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccc---eEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEE
Confidence            999998777654      46899999986      3211   2223334344443 588999887776543    36999


Q ss_pred             EECCCCcE--EEEeecCCCCC-CceEEEEECCCCcEEEEecCCCC
Q 023822          233 LDSFRGTL--LSTYNVKPVSR-NSTLEASFSPEGMFVISGRVSPF  274 (276)
Q Consensus       233 ~d~~~~~~--~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~dg~  274 (276)
                      ||+.+++.  ...+..  ... ..+..++|++++.++++...|+.
T Consensus       316 ~d~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~lv~~~~~~g~  358 (710)
T 2xdw_A          316 IDFTDPEESKWKVLVP--EHEKDVLEWVACVRSNFLVLCYLHDVK  358 (710)
T ss_dssp             EETTSCCGGGCEEEEC--CCSSCEEEEEEEETTTEEEEEEEETTE
T ss_pred             EeCCCCCcccceeccC--CCCCCeEEEEEEEcCCEEEEEEEECCE
Confidence            99987742  233431  122 36888999988888888887763

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.67  E-value=4e-15  Score=118.07  Aligned_cols=175  Identities=16%  Similarity=0.124  Sum_probs=132.9

Q ss_pred             cEEEEEEcCCCCEEEEeecCCeEEEEEccCCe---------eee-eeeeeeeceEEEEEeccCCeEEEeccCCCCCceEE
Q 023822           36 RISSMDFHKSSSYLVTASDDESIRLYDVTAAT---------CLK-TINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL  105 (276)
Q Consensus        36 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---------~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~  105 (276)
                      +++.+++++...++++|+.++ +++|+++..+         ... ....+.. |..++|  +++.|+++ .   ++.|++
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~---~~~l~v  110 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-T---RNALYS  110 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-E---SSEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-c---CCcEEE
Confidence            689999999999999999885 6679976443         111 1223445 999999  99999998 5   899999


Q ss_pred             EEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEeeCCeEE
Q 023822          106 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIR  185 (276)
Q Consensus       106 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~  185 (276)
                      ||+.+.........|...+.++.+.+.  .+++++.||.|.+||+..+....  ....+.+++|+|+| +.++..||.++
T Consensus       111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~--~~~~Vs~v~WSpkG-~~vg~~dg~i~  185 (388)
T 1xip_A          111 LDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ--LAQNVTSFDVTNSQ-LAVLLKDRSFQ  185 (388)
T ss_dssp             EESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE--EEESEEEEEECSSE-EEEEETTSCEE
T ss_pred             EEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc--ccCCceEEEEcCCc-eEEEEcCCcEE
Confidence            999887766666777888888877654  38889999999999999877644  45678999999999 55555599999


Q ss_pred             EEecccCCCCCeeeee----ec---CCCCCceEEEECCCCcEEEE
Q 023822          186 MFDARKYEKGPFDIFS----VG---GDISDANVVKFSNDGRLMLL  223 (276)
Q Consensus       186 ~~d~~~~~~~~~~~~~----~~---~~~~~i~~~~~~~~~~~l~~  223 (276)
                      +|+....+..+.....    +.   .|...|.++.|.+++.++++
T Consensus       186 ~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          186 SFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            9988764411011110    12   36678999999999998877

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.67  E-value=5e-15  Score=117.54  Aligned_cols=172  Identities=9%  Similarity=0.070  Sum_probs=125.7

Q ss_pred             ceEEEEEeccCCeEEEeccCCCCCceEEEEccCCc---------e-eeeecccCcceEEEEeccCCCEEEEeeCCCeEEE
Q 023822           78 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK---------Y-LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLL  147 (276)
Q Consensus        78 ~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~---------~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i  147 (276)
                      ++..+++++....+++++.   + .+.+|++...+         . ......+.. |..++|  ++++|+++ .++.|++
T Consensus        39 ~~nlLais~~~gll~a~~~---~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v  110 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASG---S-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYS  110 (388)
T ss_dssp             CCBCEEEETTTTEEEEEET---T-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEE
T ss_pred             cccEEEEcCCCCEEEEeCC---C-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEE
Confidence            6899999999999999884   4 66779875433         1 112223666 999999  88999988 8899999


Q ss_pred             EeccCceeeeeEee--cCCCeeEecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEee
Q 023822          148 WDQRAEKCQGLLRV--QGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT  225 (276)
Q Consensus       148 wd~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  225 (276)
                      ||+++.......+.  ..+..+.+.+. .++++..||.|.+||+.....    . .   +...|++++|||+|  ++.|.
T Consensus       111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p-~~av~~~dG~L~v~dl~~~~~----~-~---~~~~Vs~v~WSpkG--~~vg~  179 (388)
T 1xip_A          111 LDLEELSEFRTVTSFEKPVFQLKNVNN-TLVILNSVNDLSALDLRTKST----K-Q---LAQNVTSFDVTNSQ--LAVLL  179 (388)
T ss_dssp             EESSSTTCEEEEEECSSCEEEEEECSS-EEEEEETTSEEEEEETTTCCE----E-E---EEESEEEEEECSSE--EEEEE
T ss_pred             EEchhhhccCccceeecceeeEEecCC-CEEEEECCCCEEEEEccCCcc----c-c---ccCCceEEEEcCCc--eEEEE
Confidence            99987654433322  22334444443 366666699999999986543    1 1   23479999999999  67889


Q ss_pred             cCCcEEEEECCCCcE--EEEeec------CCCCCCceEEEEECCCCcEEEE
Q 023822          226 MEGHIHVLDSFRGTL--LSTYNV------KPVSRNSTLEASFSPEGMFVIS  268 (276)
Q Consensus       226 ~dg~i~i~d~~~~~~--~~~~~~------~~~~~~~v~~~~~s~~g~~l~~  268 (276)
                      .||.+++|+...++.  .+++..      +.+|...|.++.|.+++.+|++
T Consensus       180 ~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          180 KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             cCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            999999999877775  555521      1136788999999999999876

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.67  E-value=1.4e-13  Score=105.33  Aligned_cols=222  Identities=9%  Similarity=0.037  Sum_probs=157.8

Q ss_pred             cccceeeccCC-CcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeee-eceEEEEEeccCCeEEEeccCCCCC
Q 023822           24 MEVGMSFRDYN-GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK-YGVDLVCFTSHPTTVIYSSKNGWDE  101 (276)
Q Consensus        24 ~~~~~~~~~h~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~d~  101 (276)
                      -+.+.++..+. ..+.+++++|+|++|+  +.++.|..||. +++.+..+..+. ..+.++.+.++++.+++.+..  ++
T Consensus        25 G~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~--~~   99 (276)
T 3no2_A           25 KEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGH--PS   99 (276)
T ss_dssp             TEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEEST--TE
T ss_pred             CeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCC--CC
Confidence            34445565555 4688999999999888  34678999998 899888887652 468889999999999887631  45


Q ss_pred             ceEEEEccCCceeeeec------ccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEee-cCCCeeEecCCCc
Q 023822          102 SLRLLSLHDNKYLRYFK------GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV-QGRPAAAYDDQGL  174 (276)
Q Consensus       102 ~i~~~d~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~  174 (276)
                      .+..+|. +++.+..+.      .+......+++.++++++++...++.|..||.. ++.+..+.. .....+...+++.
T Consensus       100 ~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~  177 (276)
T 3no2_A          100 TILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGD  177 (276)
T ss_dssp             EEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSC
T ss_pred             EEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCC
Confidence            6777775 677666553      122345566788999999999999999999988 887777743 3456778889999


Q ss_pred             EEEEee-CCeEEEEecccCCCCCeeeeeecCC------CCCceEEEECCCCcEEEEeecC--------CcEEEEEC-CCC
Q 023822          175 VFAVAF-GGYIRMFDARKYEKGPFDIFSVGGD------ISDANVVKFSNDGRLMLLTTME--------GHIHVLDS-FRG  238 (276)
Q Consensus       175 ~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~d--------g~i~i~d~-~~~  238 (276)
                      +++++. ++.|..+|..+++.    +..+...      ...+..++..++|..+++....        +..+++++ .++
T Consensus       178 ~~v~~~~~~~v~~~d~~tG~~----~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g  253 (276)
T 3no2_A          178 CLVACGDAHCFVQLNLESNRI----VRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEG  253 (276)
T ss_dssp             EEEECBTTSEEEEECTTTCCE----EEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTS
T ss_pred             EEEEeCCCCeEEEEeCcCCcE----EEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCC
Confidence            888887 56899999987664    3333221      1236788899999988776321        23456665 588


Q ss_pred             cEEEEeecCCCCCCceEEE
Q 023822          239 TLLSTYNVKPVSRNSTLEA  257 (276)
Q Consensus       239 ~~~~~~~~~~~~~~~v~~~  257 (276)
                      +.+-++.... .-+.+..+
T Consensus       254 ~~~W~~~~~~-~~~~~~~~  271 (276)
T 3no2_A          254 KVVWQLNDKV-KFGMISTI  271 (276)
T ss_dssp             BEEEEECCTT-TSCCCCEE
T ss_pred             CEEEEecCcc-cccceeee
Confidence            8887776432 23444444

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.66  E-value=1e-12  Score=101.56  Aligned_cols=225  Identities=8%  Similarity=0.090  Sum_probs=156.9

Q ss_pred             CCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeee-eeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCC
Q 023822           33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLK-TINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN  111 (276)
Q Consensus        33 h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~  111 (276)
                      +...+.++++.++++++++...++.|..||.. ++... ........+..+++.+++..+++...   ++.|..+|.. +
T Consensus        60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~---~~~i~~~~~~-g  134 (300)
T 2qc5_A           60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLN---GDRIGKLTAD-G  134 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETT---TTEEEEECTT-S
T ss_pred             CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccC---CCeEEEECCC-C
Confidence            34678999999999877777667899999987 55432 12222356889999998887776655   7889999987 5


Q ss_pred             ceee-eecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE---eecCCCeeEecCCCcEEEEee-CCeEEE
Q 023822          112 KYLR-YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL---RVQGRPAAAYDDQGLVFAVAF-GGYIRM  186 (276)
Q Consensus       112 ~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~-d~~i~~  186 (276)
                      +... .+......+..+++.++++++++...++.|..+|. +++.....   ....+..+++++++.++++.. .+.|.+
T Consensus       135 ~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~  213 (300)
T 2qc5_A          135 TIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGR  213 (300)
T ss_dssp             CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred             CEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEE
Confidence            5432 23334456889999999997776666789999998 44433321   112345788999998887776 578999


Q ss_pred             EecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEE
Q 023822          187 FDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFV  266 (276)
Q Consensus       187 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  266 (276)
                      ||. .++   ............+.+++++++|+++++...++.|..||. +++.. .+... .....+.+++++++|++.
T Consensus       214 ~~~-~g~---~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~-~~~~~~~~i~~~~~g~l~  286 (300)
T 2qc5_A          214 ITT-TGE---ISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQ-TENAEPHGITFGKDGSVW  286 (300)
T ss_dssp             ECT-TCC---EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECC-STTCCCCCEEECTTSCEE
T ss_pred             EcC-CCc---EEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECC-ccCCccceeEeCCCCCEE
Confidence            998 322   222223334456889999999996666666789999997 55443 33221 234568899999999877


Q ss_pred             EEec
Q 023822          267 ISGR  270 (276)
Q Consensus       267 ~~~~  270 (276)
                      ++..
T Consensus       287 v~~~  290 (300)
T 2qc5_A          287 FALK  290 (300)
T ss_dssp             EECS
T ss_pred             EEcc
Confidence            6654

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.66  E-value=1.2e-13  Score=109.26  Aligned_cols=243  Identities=9%  Similarity=0.020  Sum_probs=154.8

Q ss_pred             cccceeeccCCCcEEEEEEcCCCCEEEEee--cCCeEEEEEccCCeeeeeee-------eeeeceEEEEEeccCCeEEEe
Q 023822           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTAS--DDESIRLYDVTAATCLKTIN-------SKKYGVDLVCFTSHPTTVIYS   94 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~   94 (276)
                      ++.+..+.   ..+..++++++|+.+++..  .++.++||.+.+++.. .+.       .+-..+..+++.++++.+++-
T Consensus         9 ~~~v~~~~---~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D   84 (343)
T 2qe8_A            9 LEVVAELS---LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLD   84 (343)
T ss_dssp             CEEEEEES---SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEE
T ss_pred             eEEEEEcC---CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEc
Confidence            44444443   6789999999999988864  2343556665555432 221       233578999999997654443


Q ss_pred             ccC--CCCCceEEEEccCCceeeeecc------cCcceEEEEeccCCCE-EEEee---CCCeEEEEeccCceeeeeEee-
Q 023822           95 SKN--GWDESLRLLSLHDNKYLRYFKG------HHDRVVSLSLCSSKDC-FISGS---LDRTVLLWDQRAEKCQGLLRV-  161 (276)
Q Consensus        95 ~~~--~~d~~i~~~d~~~~~~~~~~~~------~~~~i~~~~~~~~~~~-l~~~~---~d~~i~iwd~~~~~~~~~~~~-  161 (276)
                      ...  ..+..|.+||+.+++.+..+..      +...+..+++++++.. +++..   .++.|.+||+.+++....+.. 
T Consensus        85 ~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~  164 (343)
T 2qe8_A           85 NGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGY  164 (343)
T ss_dssp             CHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTC
T ss_pred             CCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCC
Confidence            210  0036899999999887665542      2235688999986544 45544   578999999987665443311 


Q ss_pred             ------------------------------cCCCeeEecCCCcEEEEee-C-CeEEEEecccCCCCCe------eeeeec
Q 023822          162 ------------------------------QGRPAAAYDDQGLVFAVAF-G-GYIRMFDARKYEKGPF------DIFSVG  203 (276)
Q Consensus       162 ------------------------------~~~~~~~~~~~~~~l~~~~-d-~~i~~~d~~~~~~~~~------~~~~~~  203 (276)
                                                    .....++++|+++.|..+. . ..+..++.........      ..+...
T Consensus       165 ~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  244 (343)
T 2qe8_A          165 PGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERY  244 (343)
T ss_dssp             TTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE
T ss_pred             CcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEec
Confidence                                          1234689999997766665 3 4666665432111000      001111


Q ss_pred             CCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCC
Q 023822          204 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVS  272 (276)
Q Consensus       204 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  272 (276)
                      ++......++++++|.++++...++.|.+||..+++.......  .....+.+++|.++|+++++.+..
T Consensus       245 g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~--~~~~~p~~va~~~~g~l~v~~~~~  311 (343)
T 2qe8_A          245 SEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD--EKLSWTDSFNFGSDGYLYFDCNQL  311 (343)
T ss_dssp             EECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC--GGGSCEEEEEECTTSCEEEEECCG
T ss_pred             ccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC--CceecCCeeEECCCCcEEEEeCcc
Confidence            2233567799999999888888899999999856765433331  124568999999999888777644

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.65  E-value=4.9e-14  Score=121.66  Aligned_cols=230  Identities=13%  Similarity=0.092  Sum_probs=146.3

Q ss_pred             cCCCcEEEEEEcCCCCEEEEe-----ecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccC---------
Q 023822           32 DYNGRISSMDFHKSSSYLVTA-----SDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN---------   97 (276)
Q Consensus        32 ~h~~~v~~~~~~~~~~~l~~~-----~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~---------   97 (276)
                      +|...+..++|||||++||.+     +.+..|++||+.+++.+.. .........++|+ |++.|+.+...         
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence            466678899999999999843     3335799999999986543 2222224678999 99999988762         


Q ss_pred             -CCCCceEEEEccCCce----eeeecc-cCcceEEEEeccCCCEEEEeeC----CCeEEEEeccCce-eeeeEe-ecCCC
Q 023822           98 -GWDESLRLLSLHDNKY----LRYFKG-HHDRVVSLSLCSSKDCFISGSL----DRTVLLWDQRAEK-CQGLLR-VQGRP  165 (276)
Q Consensus        98 -~~d~~i~~~d~~~~~~----~~~~~~-~~~~i~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~-~~~~~~-~~~~~  165 (276)
                       +....|++|++.++..    +..... |......+.|+||+++|+....    +..|+++|+.++. ....+. .....
T Consensus       204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~  283 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD  283 (693)
T ss_dssp             -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred             cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence             1123599999877642    222233 4455788999999997754432    3589999998763 223332 11222


Q ss_pred             eeEecCCC-cEEEEee-C---CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecC-C--cEEEEECCC
Q 023822          166 AAAYDDQG-LVFAVAF-G---GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME-G--HIHVLDSFR  237 (276)
Q Consensus       166 ~~~~~~~~-~~l~~~~-d---~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~  237 (276)
                      .-.+++++ .+++.+. +   +.|..+|+.++......  .+..+...+.  .|+++++.|+....+ +  .|++|++..
T Consensus       284 ~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~--~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g  359 (693)
T 3iuj_A          284 VSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWR--DLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEG  359 (693)
T ss_dssp             EEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCE--EEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTS
T ss_pred             EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccE--EEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCC
Confidence            22255554 4444444 2   68999998875432112  2223333444  899999888776654 3  689999874


Q ss_pred             CcEEEEeecCCCCCCceEEEEECCCCcEEEEec
Q 023822          238 GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGR  270 (276)
Q Consensus       238 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  270 (276)
                      + ....+..  ...+.+..+.++++++.|+...
T Consensus       360 ~-~~~~l~~--p~~~~~~~~~~~~d~~~l~~~~  389 (693)
T 3iuj_A          360 K-RVREVAL--PGLGSVSGFNGKHDDPALYFGF  389 (693)
T ss_dssp             C-EEEEECC--SSSSEEEECCCCTTCSCEEEEE
T ss_pred             C-eeEEeec--CCCceEEeeecCCCCCEEEEEe
Confidence            4 4445442  2345677888888887665543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.64  E-value=5.1e-13  Score=106.57  Aligned_cols=226  Identities=13%  Similarity=0.097  Sum_probs=149.7

Q ss_pred             CCCCEEEE-eecCCeEEEEEccCC----eeeeeee-------eeeeceEEEEEeccCCeEEEeccC---CCCCceEEEEc
Q 023822           44 KSSSYLVT-ASDDESIRLYDVTAA----TCLKTIN-------SKKYGVDLVCFTSHPTTVIYSSKN---GWDESLRLLSL  108 (276)
Q Consensus        44 ~~~~~l~~-~~~d~~i~iwd~~~~----~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~~---~~d~~i~~~d~  108 (276)
                      +++++|+. +..++.|.++|+.+.    +...+++       ........+...|++ .++++..+   +..+.|.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            77777765 557789999998755    5556553       112245667888999 55554431   11378999999


Q ss_pred             cCCceeeeecccC---cceEEEEeccCCCEEEEee-------------------CCCeEEEEeccCceeeeeEeec----
Q 023822          109 HDNKYLRYFKGHH---DRVVSLSLCSSKDCFISGS-------------------LDRTVLLWDQRAEKCQGLLRVQ----  162 (276)
Q Consensus       109 ~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~-------------------~d~~i~iwd~~~~~~~~~~~~~----  162 (276)
                      .+++.+.++....   ..-..+.|+|+++.+++..                   .+.+|.+||+.+++.+..+...    
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~  251 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR  251 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred             CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence            9999988886322   2234588899999888874                   3689999999998888877543    


Q ss_pred             CCCeeEe--cCCCcEEEEee-------CCeEEEEecccCCCCCeeeeeecCC----------------CCCceEEEECCC
Q 023822          163 GRPAAAY--DDQGLVFAVAF-------GGYIRMFDARKYEKGPFDIFSVGGD----------------ISDANVVKFSND  217 (276)
Q Consensus       163 ~~~~~~~--~~~~~~l~~~~-------d~~i~~~d~~~~~~~~~~~~~~~~~----------------~~~i~~~~~~~~  217 (276)
                      ....+.|  +|+++++.++.       +++|.+|....+.-.......+...                ......+.+|||
T Consensus       252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D  331 (462)
T 2ece_A          252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD  331 (462)
T ss_dssp             EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred             ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence            2334444  99997665543       4678776665322111111111110                235788999999


Q ss_pred             CcEEEEeec-CCcEEEEECCC---CcEEEEeecCC-----------CCCCceEEEEECCCCcEEEEec
Q 023822          218 GRLMLLTTM-EGHIHVLDSFR---GTLLSTYNVKP-----------VSRNSTLEASFSPEGMFVISGR  270 (276)
Q Consensus       218 ~~~l~~~~~-dg~i~i~d~~~---~~~~~~~~~~~-----------~~~~~v~~~~~s~~g~~l~~~~  270 (276)
                      |++|+++.. .+.|.+||+.+   .+++..+....           ...+....++++|||++|+++.
T Consensus       332 GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          332 DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            999988764 67999999853   35555554210           0012468899999999998886

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.63  E-value=6.5e-14  Score=121.02  Aligned_cols=221  Identities=9%  Similarity=0.024  Sum_probs=140.8

Q ss_pred             cCCCCEEEEeecCC-----eEEEEEccCCeeeeeee------eeeeceEEEEEeccCCeEEEeccCC--CCCceEEEEcc
Q 023822           43 HKSSSYLVTASDDE-----SIRLYDVTAATCLKTIN------SKKYGVDLVCFTSHPTTVIYSSKNG--WDESLRLLSLH  109 (276)
Q Consensus        43 ~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~~~--~d~~i~~~d~~  109 (276)
                      +|+|++++....++     .+.+.+...++....+.      .|...+..++|+||+++|+.+...+  .+..|++||+.
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~  155 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD  155 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence            37899888766543     34444444444333222      2344689999999999998654321  14789999999


Q ss_pred             CCcee-eeecccCcce--EEEEeccCCCEEEEeeCCCe-------------EEEEeccCceee--eeEee----cCCCee
Q 023822          110 DNKYL-RYFKGHHDRV--VSLSLCSSKDCFISGSLDRT-------------VLLWDQRAEKCQ--GLLRV----QGRPAA  167 (276)
Q Consensus       110 ~~~~~-~~~~~~~~~i--~~~~~~~~~~~l~~~~~d~~-------------i~iwd~~~~~~~--~~~~~----~~~~~~  167 (276)
                      +++.+ ..   +...+  ..++|+|||+.|+.++.|..             |++|++.+++..  ..+..    .....+
T Consensus       156 tg~~~~~~---~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~  232 (695)
T 2bkl_A          156 SGEWSKVD---VIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQS  232 (695)
T ss_dssp             TCCBCSSC---CBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEE
T ss_pred             CCCCcCCc---ccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEE
Confidence            98865 21   11222  67899999999999988766             999999887632  22221    234578


Q ss_pred             EecCCCcEEEEee-CC----eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEee---cCCcEEEEECCCCc
Q 023822          168 AYDDQGLVFAVAF-GG----YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT---MEGHIHVLDSFRGT  239 (276)
Q Consensus       168 ~~~~~~~~l~~~~-d~----~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~  239 (276)
                      .++|+|++++... ++    .|++++..+++     ...+..+...+....+ ++|.+++.+.   .++.|.+||+.+++
T Consensus       233 ~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-----~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~  306 (695)
T 2bkl_A          233 DLSRDGKYLFVYILRGWSENDVYWKRPGEKD-----FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPA  306 (695)
T ss_dssp             EECTTSCCEEEEEEETTTEEEEEEECTTCSS-----CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCS
T ss_pred             EECCCCCEEEEEEeCCCCceEEEEEcCCCCc-----eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCC
Confidence            9999998777665 44    66666554332     2222233345556666 6666444433   25789999998775


Q ss_pred             E--EEEeecCCCCCCceEEEEECCCCcEEEEecCCCC
Q 023822          240 L--LSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPF  274 (276)
Q Consensus       240 ~--~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~  274 (276)
                      .  ...+..+ .....+..++|+ ++.++++...|+.
T Consensus       307 ~~~~~~l~~~-~~~~~l~~~~~~-~~~lv~~~~~dg~  341 (695)
T 2bkl_A          307 RASWKEIVPE-DSSASLLSVSIV-GGHLSLEYLKDAT  341 (695)
T ss_dssp             GGGCEEEECC-CSSCEEEEEEEE-TTEEEEEEEETTE
T ss_pred             ccCCeEEecC-CCCCeEEEEEEE-CCEEEEEEEECCE
Confidence            3  2233211 124568888998 7778888877764

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.57  E-value=1.8e-12  Score=104.29  Aligned_cols=214  Identities=13%  Similarity=0.127  Sum_probs=141.3

Q ss_pred             ccccceeeccCCCcEEEEEEcCCCCEEEEee----------cCCeEEEEEccCCeeeeeeeee-------eeceEEEEEe
Q 023822           23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTAS----------DDESIRLYDVTAATCLKTINSK-------KYGVDLVCFT   85 (276)
Q Consensus        23 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~   85 (276)
                      +.+.+.++.--..+  .++++||+++|+++.          .++.|.++|..+++.+..+...       ......+.++
T Consensus       108 t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~s  185 (426)
T 3c75_H          108 TGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALT  185 (426)
T ss_dssp             TTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEEC
T ss_pred             CCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEc
Confidence            34555555544455  799999999988776          3678999999999988887642       1245678999


Q ss_pred             ccCCeEEEeccCCCCCceEEEEccCCceeeeecccCc-------ceEEEEeccCC-------------------------
Q 023822           86 SHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHD-------RVVSLSLCSSK-------------------------  133 (276)
Q Consensus        86 ~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~-------~i~~~~~~~~~-------------------------  133 (276)
                      |++++++++... .++.|.+.|+.+++.+..+.-...       .-..+.+++++                         
T Consensus       186 pDGk~lyV~n~~-~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~  264 (426)
T 3c75_H          186 PDNKNLLFYQFS-PAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDE  264 (426)
T ss_dssp             TTSSEEEEEECS-SSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTS
T ss_pred             CCCCEEEEEecC-CCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCC
Confidence            999999998641 157899999999988776643110       00112233333                         


Q ss_pred             ------------CEEEEeeCCCeEEEEeccCceee--eeE------------eecCCCeeEecCCCcEEEEee-------
Q 023822          134 ------------DCFISGSLDRTVLLWDQRAEKCQ--GLL------------RVQGRPAAAYDDQGLVFAVAF-------  180 (276)
Q Consensus       134 ------------~~l~~~~~d~~i~iwd~~~~~~~--~~~------------~~~~~~~~~~~~~~~~l~~~~-------  180 (276)
                                  ..++.....+.+.+.|+......  ..+            ...+...++++|++..+.+..       
T Consensus       265 p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gt  344 (426)
T 3c75_H          265 LLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWK  344 (426)
T ss_dssp             CBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTC
T ss_pred             ceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccccccc
Confidence                        33333334455566665433211  111            112223478898876554443       


Q ss_pred             ----CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCc-EEEEee-cCCcEEEEECCCCcEEEEe
Q 023822          181 ----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR-LMLLTT-MEGHIHVLDSFRGTLLSTY  244 (276)
Q Consensus       181 ----d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~dg~i~i~d~~~~~~~~~~  244 (276)
                          ++.|.++|..+.+.    +..+.. ......++|+|+|+ ++++.. .++.|.++|+.+++.++++
T Consensus       345 hk~~s~~VsVID~~T~kv----v~~I~v-g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          345 HKAASRFVVVLNAETGER----INKIEL-GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             TTSCEEEEEEEETTTCCE----EEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             ccCCCCEEEEEECCCCeE----EEEEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence                24799999988653    222221 12478899999999 888887 5899999999999999987

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.57  E-value=4e-15  Score=118.82  Aligned_cols=203  Identities=16%  Similarity=0.063  Sum_probs=115.5

Q ss_pred             CCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcc-
Q 023822           45 SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDR-  123 (276)
Q Consensus        45 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-  123 (276)
                      ++..+++++.|+.|+.||..+|+.+..+..  .++.+..+..++..+++++.   |+.|+.||..+++.+..+..+... 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~---dg~l~a~d~~tG~~~w~~~~~~~~~   82 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPN---DGSLYTLGSKNNEGLTKLPFTIPEL   82 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTT---TCCEEEC-----CCSEECSCCHHHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCC---CCEEEEEECCCCceeeeeeccCccc
Confidence            567899999999999999999999887766  45555556667777777666   999999999999877666533211 


Q ss_pred             eE-EEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEe-eCCeEEEEecccCCCCCeeeee
Q 023822          124 VV-SLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVA-FGGYIRMFDARKYEKGPFDIFS  201 (276)
Q Consensus       124 i~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~  201 (276)
                      +. +..+. .+..+++++.|+.|+.||.++++.+..+....  ...++|++..++++ .++.|+.||.++++.....  .
T Consensus        83 ~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~--~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~--~  157 (369)
T 2hz6_A           83 VQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF--ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNA--T  157 (369)
T ss_dssp             HTTCSCC------CCCCEEEEEEEEECCC------------------------EEEEEEEEEEECCCSSSSSCCCEE--E
T ss_pred             cccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC--cccccccCCEEEEEecCCEEEEEECCCCCEEEeE--e
Confidence            11 11111 34567888889999999999998876664332  23445565555544 4899999999987752211  1


Q ss_pred             ecCCCCCceEEEECCCC---cEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceE-EEEECCCCcE
Q 023822          202 VGGDISDANVVKFSNDG---RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTL-EASFSPEGMF  265 (276)
Q Consensus       202 ~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~-~~~~s~~g~~  265 (276)
                      ...    ....++.++.   ..+++++.||.|+.||..+|+.+-.+.    ...++. ...++++|..
T Consensus       158 ~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~----~~~pv~~~~~~~~dg~~  217 (369)
T 2hz6_A          158 YFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN----YASPVVAFYVWQREGLR  217 (369)
T ss_dssp             EEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE----CSSCEEEEEECTTSSCE
T ss_pred             ccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec----CCCceEEEEEecCCceE
Confidence            111    1222333332   457778899999999999999988776    334443 3456667643

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.57  E-value=2.2e-13  Score=107.84  Aligned_cols=210  Identities=8%  Similarity=-0.050  Sum_probs=134.0

Q ss_pred             eEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccC-------CCCCceEEEEccCCceeeeeccc-------Cc
Q 023822           57 SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN-------GWDESLRLLSLHDNKYLRYFKGH-------HD  122 (276)
Q Consensus        57 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-------~~d~~i~~~d~~~~~~~~~~~~~-------~~  122 (276)
                      +|.+.|..+++.+.++.....+  .+.++|++++++++...       ..++.|.+||+.+++.+.++...       ..
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~  124 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence            8889999999999999876666  79999999999998620       01688999999999999888643       12


Q ss_pred             ceEEEEeccCCCEEEEeeC--CCeEEE--EeccCceeeeeEeecC---------CCeeEecCCCcE--------------
Q 023822          123 RVVSLSLCSSKDCFISGSL--DRTVLL--WDQRAEKCQGLLRVQG---------RPAAAYDDQGLV--------------  175 (276)
Q Consensus       123 ~i~~~~~~~~~~~l~~~~~--d~~i~i--wd~~~~~~~~~~~~~~---------~~~~~~~~~~~~--------------  175 (276)
                      ....++++|||++++++..  +..+.+  +|+.+   +..+....         ...+..++++++              
T Consensus       125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~  201 (368)
T 1mda_H          125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGI  201 (368)
T ss_dssp             CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEE
T ss_pred             CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCe
Confidence            3567999999999888865  467888  99876   22221111         011222222222              


Q ss_pred             ------------------------EEEeeCCeEEEEecccCCCCCeeeeeecC--------CCCCceEEEECCCCcEEEE
Q 023822          176 ------------------------FAVAFGGYIRMFDARKYEKGPFDIFSVGG--------DISDANVVKFSNDGRLMLL  223 (276)
Q Consensus       176 ------------------------l~~~~d~~i~~~d~~~~~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~  223 (276)
                                              +.++. +.+.+.|.............+..        .......++++|+++.+++
T Consensus       202 v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV  280 (368)
T 1mda_H          202 VGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI  280 (368)
T ss_dssp             CCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred             EEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEE
Confidence                                    22222 34444444321110000000000        0111222789999988887


Q ss_pred             eec---------CCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcE-EEEec-CCCCCC
Q 023822          224 TTM---------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF-VISGR-VSPFSS  276 (276)
Q Consensus       224 ~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~-~dg~vs  276 (276)
                      +..         ++.+.++|+.+++.+..+..    ......++|+|||++ +++.. .++.|+
T Consensus       281 ~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v----g~~p~gi~~s~Dg~~l~va~~~~~~~Vs  340 (368)
T 1mda_H          281 LTVEHSRSCLAAAENTSSVTASVGQTSGPISN----GHDSDAIIAAQDGASDNYANSAGTEVLD  340 (368)
T ss_dssp             EEEECSSCTTSCEEEEEEEESSSCCEEECCEE----EEEECEEEECCSSSCEEEEEETTTTEEE
T ss_pred             EeccccCcccccCCCEEEEECCCCeEEEEEEC----CCCcceEEECCCCCEEEEEccCCCCeEE
Confidence            543         23567999999999998873    346889999999984 55555 366553

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.54  E-value=1.4e-11  Score=97.54  Aligned_cols=210  Identities=12%  Similarity=0.145  Sum_probs=139.4

Q ss_pred             EEEEEEcCCCCEEEEeec--CCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccC-Cce
Q 023822           37 ISSMDFHKSSSYLVTASD--DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD-NKY  113 (276)
Q Consensus        37 v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~-~~~  113 (276)
                      -..++|+|||++|+++..  ++.|.++|+.+++.+.++....  . ...+....+.+++.+.   ||.+.+.++.+ ++.
T Consensus       139 P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~---DG~~~~v~~~~~g~v  212 (386)
T 3sjl_D          139 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHCR---DGSLAKVAFGTEGTP  212 (386)
T ss_dssp             GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEET---TSCEEEEECCSSSCC
T ss_pred             CceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEECC---CCCEEEEECCCCCeE
Confidence            456899999999988864  6899999999999998885432  1 1223334455555555   88888888765 444


Q ss_pred             eeeeccc----CcceE-EEEec-cCCCEEEEeeCCCeEEEEeccCce--eeeeE------------eecCCCeeEecCCC
Q 023822          114 LRYFKGH----HDRVV-SLSLC-SSKDCFISGSLDRTVLLWDQRAEK--CQGLL------------RVQGRPAAAYDDQG  173 (276)
Q Consensus       114 ~~~~~~~----~~~i~-~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~------------~~~~~~~~~~~~~~  173 (276)
                      ......+    ..++. ...|. ++|++++ .+.+|.|.+.|+.+..  ....+            ...+...+++++++
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~  291 (386)
T 3sjl_D          213 EITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL  291 (386)
T ss_dssp             EEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTT
T ss_pred             EEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCC
Confidence            2211111    12221 23554 5775444 5568999999997653  33322            23445578889888


Q ss_pred             cEEEEee-----------CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCc-EEEEee-cCCcEEEEECCCCcE
Q 023822          174 LVFAVAF-----------GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR-LMLLTT-MEGHIHVLDSFRGTL  240 (276)
Q Consensus       174 ~~l~~~~-----------d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~dg~i~i~d~~~~~~  240 (276)
                      ..+.+..           .+.|.++|+++.+.  .......   ..+..++++||++ +|+++. .++.|.++|..+++.
T Consensus       292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv--~~~i~vg---~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~  366 (386)
T 3sjl_D          292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGER--LAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE  366 (386)
T ss_dssp             TEEEEEEEECCTTCTTSCEEEEEEEETTTCCE--EEEEEEE---EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred             CeEEEEeccccccccCCCCCEEEEEECCCCeE--EEEEECC---CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcE
Confidence            6666653           15799999988663  2222222   3678999999996 666654 589999999999999


Q ss_pred             EEEeecCCCCCCceEEEEECCC
Q 023822          241 LSTYNVKPVSRNSTLEASFSPE  262 (276)
Q Consensus       241 ~~~~~~~~~~~~~v~~~~~s~~  262 (276)
                      +.++..    .+..+.+.+++|
T Consensus       367 ~~~i~~----~~~p~~l~~s~d  384 (386)
T 3sjl_D          367 LRSVNQ----LGHGPQVITTAD  384 (386)
T ss_dssp             EEEECC----CCSSCCEEEECC
T ss_pred             EEEecC----CCCCceeEECCc
Confidence            999983    344455677776

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.54  E-value=2.4e-12  Score=112.00  Aligned_cols=223  Identities=10%  Similarity=0.081  Sum_probs=139.4

Q ss_pred             cCCCCEEEEeecCCe---EEEEEc--c---CCeeeeee------eeeeeceEEEEEeccCCeEEEeccCCCC--CceEEE
Q 023822           43 HKSSSYLVTASDDES---IRLYDV--T---AATCLKTI------NSKKYGVDLVCFTSHPTTVIYSSKNGWD--ESLRLL  106 (276)
Q Consensus        43 ~~~~~~l~~~~~d~~---i~iwd~--~---~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~~~~d--~~i~~~  106 (276)
                      +|+|++++....++.   -.+|..  .   .++....+      ..+...+..++|+||+++++.+...+.+  ..|++|
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~  194 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV  194 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence            389998887665432   444543  3   33322221      1223468899999999999988652112  469999


Q ss_pred             EccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCe--------------EEEEeccCceee--eeEeec----CCCe
Q 023822          107 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRT--------------VLLWDQRAEKCQ--GLLRVQ----GRPA  166 (276)
Q Consensus       107 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~--------------i~iwd~~~~~~~--~~~~~~----~~~~  166 (276)
                      |+.+++.+... .+...+..++|+|| +.|+.++.++.              |++|++.++...  ..+...    ....
T Consensus       195 dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~  272 (741)
T 1yr2_A          195 GVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHG  272 (741)
T ss_dssp             ETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred             ECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEE
Confidence            99999875431 12222467899999 98888876554              899998776532  222221    2457


Q ss_pred             eEecCCCcEEEEee-CC-----eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeec----CCcEEEEECC
Q 023822          167 AAYDDQGLVFAVAF-GG-----YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM----EGHIHVLDSF  236 (276)
Q Consensus       167 ~~~~~~~~~l~~~~-d~-----~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~  236 (276)
                      +.|+|+|++++... ++     .|++||+.++.....  ..+..+....... ++|+|+.|+..+.    ++.|.+||+.
T Consensus       273 ~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~--~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~  349 (741)
T 1yr2_A          273 ASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPV--TALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLS  349 (741)
T ss_dssp             EEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCC--EEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECS
T ss_pred             EEECCCCCEEEEEEEccCCCcceEEEEECCCCCCccc--EEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCC
Confidence            88999998776655 33     899999987521101  1122233334444 3488888887765    3459999988


Q ss_pred             CC--cEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCC
Q 023822          237 RG--TLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPF  274 (276)
Q Consensus       237 ~~--~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~  274 (276)
                      ++  +....+.   .+...+..++|+ ++.++++...||.
T Consensus       350 ~~~~~~~~l~~---~~~~~l~~~~~~-~~~lv~~~~~dg~  385 (741)
T 1yr2_A          350 GSTPRFDTVVP---ESKDNLESVGIA-GNRLFASYIHDAK  385 (741)
T ss_dssp             SSSCEEEEEEC---CCSSEEEEEEEE-BTEEEEEEEETTE
T ss_pred             CCccccEEEec---CCCCeEEEEEEE-CCEEEEEEEECCE
Confidence            75  3333333   345567778887 5677777777764

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.52  E-value=3.3e-12  Score=105.34  Aligned_cols=222  Identities=7%  Similarity=0.066  Sum_probs=155.1

Q ss_pred             CCCEEEEeec-CCeEEEEEccCCeeeeeeeeee-eceEEEEE-e-ccCCeEEEeccC---------------CCCCceEE
Q 023822           45 SSSYLVTASD-DESIRLYDVTAATCLKTINSKK-YGVDLVCF-T-SHPTTVIYSSKN---------------GWDESLRL  105 (276)
Q Consensus        45 ~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~-~-~~~~~l~~~~~~---------------~~d~~i~~  105 (276)
                      ||++|..... ++.|.+.|+.+.++...+.... .....+++ . |+++++++++..               .+++.+.+
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv  179 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  179 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence            7888776654 5679999999999888654332 35778887 4 899999888521               12678999


Q ss_pred             EEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCC--------------------------------------eEEE
Q 023822          106 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR--------------------------------------TVLL  147 (276)
Q Consensus       106 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--------------------------------------~i~i  147 (276)
                      .|..+.+...++.--. ....++++|+|+++++.+.+.                                      .|.+
T Consensus       180 ID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V  258 (595)
T 1fwx_A          180 VDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV  258 (595)
T ss_dssp             EETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred             EECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence            9999998888776323 456788999999988888553                                      3667


Q ss_pred             EeccC--cee-eeeE-eecCCCeeEecCCCcEEEEee--CCeEEEEecccCCC------CCe-eeeeecCCCCCceEEEE
Q 023822          148 WDQRA--EKC-QGLL-RVQGRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEK------GPF-DIFSVGGDISDANVVKF  214 (276)
Q Consensus       148 wd~~~--~~~-~~~~-~~~~~~~~~~~~~~~~l~~~~--d~~i~~~d~~~~~~------~~~-~~~~~~~~~~~i~~~~~  214 (276)
                      .|.++  ++. +..+ -.....++.++|||++++++.  +.+|.++|+.+.+.      .+. .......-......++|
T Consensus       259 ID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF  338 (595)
T 1fwx_A          259 VDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAF  338 (595)
T ss_dssp             EECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEE
T ss_pred             EeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEE
Confidence            77776  333 3444 334566899999999888887  79999999986420      000 01111122346788999


Q ss_pred             CCCCcEEEEeecCCcEEEEECCC----------CcEEEEeecCCCCCCce-----EEEEECCCCcEEEEec
Q 023822          215 SNDGRLMLLTTMEGHIHVLDSFR----------GTLLSTYNVKPVSRNST-----LEASFSPEGMFVISGR  270 (276)
Q Consensus       215 ~~~~~~l~~~~~dg~i~i~d~~~----------~~~~~~~~~~~~~~~~v-----~~~~~s~~g~~l~~~~  270 (276)
                      +|+|....+.-.|+.|.+||+.+          .+.+..+.   .+-.+-     ..+.++|||++|+++.
T Consensus       339 ~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kid---V~yqpGh~~~~~g~t~~~DGk~l~~~N  406 (595)
T 1fwx_A          339 DGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLD---VHYQPGHLKTVMGETLDATNDWLVCLS  406 (595)
T ss_dssp             CTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEE---CSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred             CCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEee---cccccccceeccceEeCCCCCEEEEcC
Confidence            99994444556789999999877          56677766   232221     2235689999998864

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.51  E-value=2.1e-12  Score=102.19  Aligned_cols=224  Identities=11%  Similarity=0.001  Sum_probs=141.4

Q ss_pred             hccccceeeccCCCcEEEEEEcCCCCEEEEee----------cCCeEEEEEccCCeeeeeeeee-------eeceEEEEE
Q 023822           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTAS----------DDESIRLYDVTAATCLKTINSK-------KYGVDLVCF   84 (276)
Q Consensus        22 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~   84 (276)
                      .+.+.+.++.....+  .+.++||+++++++.          .++.|.+||+.+++.+.++...       ......+.+
T Consensus        54 ~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~  131 (368)
T 1mda_H           54 GCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGN  131 (368)
T ss_dssp             TTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEE
T ss_pred             CCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEE
Confidence            345566666554556  799999999998886          3689999999999999988654       124678999


Q ss_pred             eccCCeEEEeccCCCCCceEE--EEccCCceeeeecc---------c---------CcceEEEEe---------------
Q 023822           85 TSHPTTVIYSSKNGWDESLRL--LSLHDNKYLRYFKG---------H---------HDRVVSLSL---------------  129 (276)
Q Consensus        85 ~~~~~~l~~~~~~~~d~~i~~--~d~~~~~~~~~~~~---------~---------~~~i~~~~~---------------  129 (276)
                      +|++++++++.... +..+.+  +|+.+   +..+..         +         .+.+..+..               
T Consensus       132 SpDGk~lyVan~~~-~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t  207 (368)
T 1mda_H          132 CASSACLLFFLFGS-SAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT  207 (368)
T ss_dssp             CTTSSCEEEEECSS-SCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC
T ss_pred             cCCCCEEEEEccCC-CCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEee
Confidence            99999999986411 356888  88865   222210         0         000000100               


Q ss_pred             -----------ccCCCEEEEeeCCCeEEEEeccCce--eeeeE------------eecCCCeeEecCCCcEEEEe-e-C-
Q 023822          130 -----------CSSKDCFISGSLDRTVLLWDQRAEK--CQGLL------------RVQGRPAAAYDDQGLVFAVA-F-G-  181 (276)
Q Consensus       130 -----------~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~------------~~~~~~~~~~~~~~~~l~~~-~-d-  181 (276)
                                 .+++..++..+. +.+.+.|+....  ....+            ...+...+.++|+++.+.++ . . 
T Consensus       208 ~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~  286 (368)
T 1mda_H          208 GAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHS  286 (368)
T ss_dssp             TTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECS
T ss_pred             eeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEecccc
Confidence                       223333333334 667777765421  22211            11222347899998666544 2 2 


Q ss_pred             -------CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcE-EEEee-cCCcEEEEECCCCcEEEEeecCCCCCC
Q 023822          182 -------GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRL-MLLTT-MEGHIHVLDSFRGTLLSTYNVKPVSRN  252 (276)
Q Consensus       182 -------~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~  252 (276)
                             +.+.++|+.+.+.    +..+... .....++|+|+|++ +++.. .++.|.++|+.+++.+..+.    ...
T Consensus       287 ~~~~~~~~~~~ViD~~t~~v----v~~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~----vg~  357 (368)
T 1mda_H          287 RSCLAAAENTSSVTASVGQT----SGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE----LDK  357 (368)
T ss_dssp             SCTTSCEEEEEEEESSSCCE----EECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC----CCS
T ss_pred             CcccccCCCEEEEECCCCeE----EEEEECC-CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEE----CCC
Confidence                   3667999988653    2222211 25788999999974 55555 58999999999999999987    334


Q ss_pred             ceEEEEECC
Q 023822          253 STLEASFSP  261 (276)
Q Consensus       253 ~v~~~~~s~  261 (276)
                      ....+++.+
T Consensus       358 ~P~~i~~~~  366 (368)
T 1mda_H          358 GPESLSVQN  366 (368)
T ss_dssp             CCCEEECCC
T ss_pred             CCCEEEeec
Confidence            455666654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.51  E-value=3.4e-11  Score=96.07  Aligned_cols=225  Identities=6%  Similarity=-0.083  Sum_probs=143.9

Q ss_pred             EEcCCCCEEEEeec--CC---eEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccC-------CCCCceEEEEc
Q 023822           41 DFHKSSSYLVTASD--DE---SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN-------GWDESLRLLSL  108 (276)
Q Consensus        41 ~~~~~~~~l~~~~~--d~---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-------~~d~~i~~~d~  108 (276)
                      ...|+++++++...  ..   .|.++|..+++.+..+.....+  .++++|++++++++...       ..++.|.+||.
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~  104 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP  104 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence            33467777776653  22   8899999999988887755444  99999999999998621       11678999999


Q ss_pred             cCCceeeeeccc-------CcceEEEEeccCCCEEEEeeC--CCeEEEEeccCceeeee-EeecCCCeeEecCCC--cEE
Q 023822          109 HDNKYLRYFKGH-------HDRVVSLSLCSSKDCFISGSL--DRTVLLWDQRAEKCQGL-LRVQGRPAAAYDDQG--LVF  176 (276)
Q Consensus       109 ~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~--~~l  176 (276)
                      .+.+.+..+.-.       ......+.|+|||++|+++..  ++.|.++| .+++.+.. +....  ++.+.|++  .++
T Consensus       105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~--~~~~~~~~~~~~~  181 (373)
T 2mad_H          105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT--CYHIHPGAPSTFY  181 (373)
T ss_pred             CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc--eEEEEeCCCceEE
Confidence            988877766422       123458999999999998874  47899999 99888776 53322  34455554  344


Q ss_pred             EEeeCCeEEEEecccCCCCCeeee-eecCCCCC-ceEEEECCCCcEEEEeecCCcEEEEECCCCc--EEEEeecCCC---
Q 023822          177 AVAFGGYIRMFDARKYEKGPFDIF-SVGGDISD-ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT--LLSTYNVKPV---  249 (276)
Q Consensus       177 ~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~-i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~---  249 (276)
                      +.+.||.+.++|. +++....... .......+ .....+.+++..++..+..+.+.+.|+.++.  .+..+.....   
T Consensus       182 ~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~  260 (373)
T 2mad_H          182 LLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRK  260 (373)
T ss_pred             EEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCccc
Confidence            4444899999999 6443100000 00011112 1234566666555555578899999987553  2233321000   


Q ss_pred             ----CCCceEEEEECCCCcEEEEecC
Q 023822          250 ----SRNSTLEASFSPEGMFVISGRV  271 (276)
Q Consensus       250 ----~~~~v~~~~~s~~g~~l~~~~~  271 (276)
                          .......++++||++.|+++..
T Consensus       261 ~~~~~p~g~~~~~~s~d~~~lyV~~~  286 (373)
T 2mad_H          261 ADTWRPGGWQQVAYLKSSDGIYLLTS  286 (373)
T ss_pred             ccceecCceEeEEECCCCCEEEEEec
Confidence                1122445789999988877653

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.51  E-value=1.8e-11  Score=95.34  Aligned_cols=194  Identities=9%  Similarity=0.159  Sum_probs=130.1

Q ss_pred             CCCcEEEEEEcCC-CCEEEEeecCCeEEEEEccCCeeeee-eee----eeeceEEEEEeccCCeEEEeccCCCC------
Q 023822           33 YNGRISSMDFHKS-SSYLVTASDDESIRLYDVTAATCLKT-INS----KKYGVDLVCFTSHPTTVIYSSKNGWD------  100 (276)
Q Consensus        33 h~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~~~~~~~~d------  100 (276)
                      +...+.+++++++ ++++++. ..+.|.+||.+ ++.... ...    ....+..+++.++++..++...   +      
T Consensus        69 ~~~~~~~i~~~~~~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~---~~~~~~~  143 (314)
T 1pjx_A           69 YGGIPAGCQCDRDANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPA---GEVAPAD  143 (314)
T ss_dssp             EECCEEEEEECSSSSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECB---CBCTTSC
T ss_pred             CCCCCceEEEecCCCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecC---ccccccc
Confidence            4567899999999 6655544 34479999988 665433 221    1235789999999987766553   3      


Q ss_pred             ---------CceEEEEccCCceeeeecccCcceEEEEec----cCCCEEEEe-eCCCeEEEEecc-Cceee--eeE---e
Q 023822          101 ---------ESLRLLSLHDNKYLRYFKGHHDRVVSLSLC----SSKDCFISG-SLDRTVLLWDQR-AEKCQ--GLL---R  160 (276)
Q Consensus       101 ---------~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~-~~d~~i~iwd~~-~~~~~--~~~---~  160 (276)
                               +.|..|+.. ++... +..+......++|+    |+++.++.+ ..++.|.+||++ .++..  ..+   .
T Consensus       144 ~~~~~~~~~~~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~  221 (314)
T 1pjx_A          144 YTRSMQEKFGSIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP  221 (314)
T ss_dssp             CCBTTSSSCEEEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC
T ss_pred             ccccccCCCCeEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECC
Confidence                     567777765 44333 32334456889999    999755444 567899999986 34321  111   1


Q ss_pred             e---cCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEe-ecCCcEEEEEC
Q 023822          161 V---QGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLT-TMEGHIHVLDS  235 (276)
Q Consensus       161 ~---~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~  235 (276)
                      .   .....++++++++++++.. ++.|.+||.++++.    ......+...+.+++|+|+|+.|+++ ..++.|..|++
T Consensus       222 ~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~----~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~  297 (314)
T 1pjx_A          222 GTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQP----KMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             CCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSC----SEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             CCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcE----eEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence            1   2245789999999888875 78999999875443    22223344678999999999955544 45688999997


Q ss_pred             CC
Q 023822          236 FR  237 (276)
Q Consensus       236 ~~  237 (276)
                      ..
T Consensus       298 ~~  299 (314)
T 1pjx_A          298 QR  299 (314)
T ss_dssp             SS
T ss_pred             CC
Confidence            64

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.48  E-value=3.1e-11  Score=93.45  Aligned_cols=188  Identities=14%  Similarity=0.138  Sum_probs=122.0

Q ss_pred             CCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeee----eeeceEEEEEeccCCeEEEeccCCC------CCc
Q 023822           33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS----KKYGVDLVCFTSHPTTVIYSSKNGW------DES  102 (276)
Q Consensus        33 h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~~~------d~~  102 (276)
                      ....+.+++++++|+++++ . ++.|.+||.++++.......    ....+..+++.|+++..++......      ...
T Consensus        52 ~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~  129 (297)
T 3g4e_A           52 MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQ  129 (297)
T ss_dssp             CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTC
T ss_pred             CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCC
Confidence            3567999999999995554 3 56799999988765433221    1245789999999986665432100      122


Q ss_pred             eEEEEccCCceeeeecccCcceEEEEeccCCCEE-EEeeCCCeEEEEecc--Cceee--eeE-e----ecCCCeeEecCC
Q 023822          103 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF-ISGSLDRTVLLWDQR--AEKCQ--GLL-R----VQGRPAAAYDDQ  172 (276)
Q Consensus       103 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~iwd~~--~~~~~--~~~-~----~~~~~~~~~~~~  172 (276)
                      -.+|.+........+..+......++|+|+++.| ++.+.++.|.+||+.  ++...  ..+ .    ......++++++
T Consensus       130 ~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~  209 (297)
T 3g4e_A          130 GALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAE  209 (297)
T ss_dssp             EEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTT
T ss_pred             cEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCC
Confidence            3455544322223333344456889999999865 455567899999973  44321  112 1    122457899999


Q ss_pred             CcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEEC-CCCcEEEEeec
Q 023822          173 GLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFS-NDGRLMLLTTM  226 (276)
Q Consensus       173 ~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~  226 (276)
                      |++.++.. ++.|..||..+++.    ...+..+...+++++|. |+++.|++++.
T Consensus       210 G~lwva~~~~~~v~~~d~~tG~~----~~~i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          210 GKLWVACYNGGRVIRLDPVTGKR----LQTVKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             SCEEEEEETTTEEEEECTTTCCE----EEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             CCEEEEEcCCCEEEEEcCCCceE----EEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence            98888877 68899999986553    33344444578999998 88877766554

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.48  E-value=4.1e-11  Score=96.86  Aligned_cols=183  Identities=13%  Similarity=0.119  Sum_probs=122.4

Q ss_pred             ceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCC--eEEEEeccCcee
Q 023822           78 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR--TVLLWDQRAEKC  155 (276)
Q Consensus        78 ~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~  155 (276)
                      ....++|+++++.+++...   ++.|+.||..+++....... ..... ++|+++++.|+++..++  .|.+++......
T Consensus       132 ~P~~la~d~~g~lyv~d~~---~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~  206 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRD---DPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA  206 (409)
T ss_dssp             CEEEEEECSTTEEEEEETT---TTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred             CceEEEEeCCCCEEEEecC---CCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence            5778999998886555554   78999999988776554443 23334 99999999888888766  799999876554


Q ss_pred             eeeE------eecCCCeeEecC-CCcEEEEeeCCeEEEEecccCCCCCeeeee---ecCCCCC--ceEEEECCC-CcEEE
Q 023822          156 QGLL------RVQGRPAAAYDD-QGLVFAVAFGGYIRMFDARKYEKGPFDIFS---VGGDISD--ANVVKFSND-GRLML  222 (276)
Q Consensus       156 ~~~~------~~~~~~~~~~~~-~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~---~~~~~~~--i~~~~~~~~-~~~l~  222 (276)
                      ...+      .......++++| ++.++++..++.|+.||..+...   ....   .......  ...++|+|+ +.+++
T Consensus       207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~---~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv  283 (409)
T 3hrp_A          207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV---TLIKQLELSGSLGTNPGPYLIYYFVDSNFYM  283 (409)
T ss_dssp             EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE---EEEEECCCCSCCCCSSCCEEEEETTTTEEEE
T ss_pred             eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE---EEEecccccCCCCCCccccEEEeCCCCEEEE
Confidence            3333      334567899999 66666644478999999886442   1220   1112111  239999995 66566


Q ss_pred             EeecCCcEEEEECCCCcEEEEeecCC---C---------CCCceEEEEECCCCcEEEEec
Q 023822          223 LTTMEGHIHVLDSFRGTLLSTYNVKP---V---------SRNSTLEASFSPEGMFVISGR  270 (276)
Q Consensus       223 ~~~~dg~i~i~d~~~~~~~~~~~~~~---~---------~~~~v~~~~~s~~g~~l~~~~  270 (276)
                      +-..++.|+.|+... +. ..+....   +         .-.....++++|+|+++++-.
T Consensus       284 ~d~~~~~I~~~~~~g-~~-~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~  341 (409)
T 3hrp_A          284 SDQNLSSVYKITPDG-EC-EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG  341 (409)
T ss_dssp             EETTTTEEEEECTTC-CE-EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET
T ss_pred             EeCCCCEEEEEecCC-CE-EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC
Confidence            666778999999653 32 2332110   0         023478999999999776655

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.46  E-value=2.8e-10  Score=86.61  Aligned_cols=219  Identities=7%  Similarity=0.017  Sum_probs=138.4

Q ss_pred             CcEEEEEEcCCCCEEE-EeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCce
Q 023822           35 GRISSMDFHKSSSYLV-TASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY  113 (276)
Q Consensus        35 ~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~  113 (276)
                      ..+..++|++++..|+ +-..++.|..+++........+.........+++.+++..++++...  .+.|.++++.....
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~--~~~I~~~~~~g~~~  113 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQ--LDRIEVAKMDGTQR  113 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETT--TTEEEEEETTSCSC
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECC--CCEEEEEEcCCCCE
Confidence            4567899999766555 44457899999987654333332222467899999987777776652  78899999865432


Q ss_pred             eeeecccCcceEEEEeccCCCEEEEeeC---CCeEEEEeccCceeeeeE---eecCCCeeEecCCCcEEEEee--CCeEE
Q 023822          114 LRYFKGHHDRVVSLSLCSSKDCFISGSL---DRTVLLWDQRAEKCQGLL---RVQGRPAAAYDDQGLVFAVAF--GGYIR  185 (276)
Q Consensus       114 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~--d~~i~  185 (276)
                      .............++++|++..|+.+..   .+.|..+++.... ...+   .......+++++++..|..+.  .+.|.
T Consensus       114 ~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~  192 (267)
T 1npe_A          114 RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE  192 (267)
T ss_dssp             EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEE
Confidence            2222222245689999997665554443   3688888876433 2222   122345789999765444444  68999


Q ss_pred             EEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCc
Q 023822          186 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM  264 (276)
Q Consensus       186 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  264 (276)
                      ++|......    ...... ......++.. ++.++++....+.|..+|..+++.+..+..  +.......+++.|++.
T Consensus       193 ~~~~~g~~~----~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~--g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          193 CLNPAQPGR----RKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHP--HKQTRLYGITIALSQC  263 (267)
T ss_dssp             EEETTEEEE----EEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECC--SSCCCCCCEEEECSCC
T ss_pred             EEecCCCce----EEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEcc--ccccccceeeecCccC
Confidence            999875321    111111 2234566654 344444444568999999999999888862  1122467788888864

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.44  E-value=6.9e-11  Score=92.65  Aligned_cols=209  Identities=12%  Similarity=0.104  Sum_probs=144.7

Q ss_pred             CCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceE
Q 023822           46 SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV  125 (276)
Q Consensus        46 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~  125 (276)
                      +..|..++.++.+..+|.. ++...........+..+...+++. +.+++.   ++.|..+|.. ++....+......+.
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~---~~~l~~~d~~-g~~~~~~~~~~~~~~  180 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSN---DNYLYAINPD-GTEKWRFKTNDAITS  180 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECT---TSEEEEECTT-SCEEEEEECSSCCCS
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcC---CCEEEEECCC-CCEeEEEecCCCcee
Confidence            4567778888999999988 776666655555566666666665 555655   7999999998 777766665566677


Q ss_pred             EEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe--ecCCCeeEecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeec
Q 023822          126 SLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR--VQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVG  203 (276)
Q Consensus       126 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~  203 (276)
                      ++...+++.+++. +  +.|..+| .+++......  ...+.++...+++.+.+++.++.+..+|... +.    .....
T Consensus       181 ~~~~d~~g~l~v~-t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~g-~~----~~~~~  251 (330)
T 3hxj_A          181 AASIGKDGTIYFG-S--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINPDG-TE----KWRFK  251 (330)
T ss_dssp             CCEECTTCCEEEE-S--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECTTS-CE----EEEEE
T ss_pred             eeEEcCCCEEEEE-e--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECCCC-CE----eEEee
Confidence            7777777775544 4  7899999 6665554442  2346678888998888888788899887432 21    22222


Q ss_pred             CCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          204 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       204 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      .....+..+.+.+++. |+.++.+|.|..+|. +++.+..+.   .....+.++...++|+ |..++.+|.+
T Consensus       252 ~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~~~~---~~~~~~~~~~~d~~g~-l~~gt~~G~~  317 (330)
T 3hxj_A          252 TGKRIESSPVIGNTDT-IYFGSYDGHLYAINP-DGTEKWNFE---TGSWIIATPVIDENGT-IYFGTRNGKF  317 (330)
T ss_dssp             CSSCCCSCCEECTTSC-EEEECTTCEEEEECT-TSCEEEEEE---CSSCCCSCCEECTTCC-EEEECTTSCE
T ss_pred             CCCCccccceEcCCCe-EEEecCCCCEEEECC-CCcEEEEEE---cCCccccceEEcCCCE-EEEEcCCCeE
Confidence            2333345566776765 667778888999995 788777776   3445677778878886 4557777764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.44  E-value=1.2e-10  Score=90.51  Aligned_cols=191  Identities=11%  Similarity=0.063  Sum_probs=124.2

Q ss_pred             eeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEE
Q 023822           69 LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLW  148 (276)
Q Consensus        69 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw  148 (276)
                      +..+...........|+++++.|+.....  ++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+|
T Consensus        37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~--~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~  112 (305)
T 3dr2_A           37 LLTLYDQATWSEGPAWWEAQRTLVWSDLV--GRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRS  112 (305)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEETT--TTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred             eEEEecCCcCccCCeEeCCCCEEEEEECC--CCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEE
Confidence            33343344456788999999965555432  789999998 444 34555566778999999999976665566889999


Q ss_pred             eccCceeeeeE------eecCCCeeEecCCCcEEEE----ee--------------CCeEEEEecccCCCCCeeeeeecC
Q 023822          149 DQRAEKCQGLL------RVQGRPAAAYDDQGLVFAV----AF--------------GGYIRMFDARKYEKGPFDIFSVGG  204 (276)
Q Consensus       149 d~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~----~~--------------d~~i~~~d~~~~~~~~~~~~~~~~  204 (276)
                      |.. ++.....      ....+..++++++|+++++    +.              .+.|+.||..+++..   ...   
T Consensus       113 ~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~---~~~---  185 (305)
T 3dr2_A          113 DAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQ---RMA---  185 (305)
T ss_dssp             CTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCE---EEE---
T ss_pred             CCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEE---EEe---
Confidence            986 4432222      1234567999999998885    22              256777777654431   111   


Q ss_pred             CCCCceEEEECCCCcEEEEeecC------CcEEEEECCCCcEE--EEeecCCCCCCceEEEEECCCCcEEEEecCCC
Q 023822          205 DISDANVVKFSNDGRLMLLTTME------GHIHVLDSFRGTLL--STYNVKPVSRNSTLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       205 ~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~--~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  273 (276)
                      .......++|+|+++.|+.+...      +.|.+|++..+...  ..+..  ...+.+..++++++|++.++. .+|
T Consensus       186 ~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~--~~~~~pdgi~~d~~G~lwv~~-~~g  259 (305)
T 3dr2_A          186 DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFAS--VPDGLPDGFCVDRGGWLWSSS-GTG  259 (305)
T ss_dssp             EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEEC--CSSSCCCSEEECTTSCEEECC-SSE
T ss_pred             cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEE--CCCCCCCeEEECCCCCEEEec-CCc
Confidence            22356789999999988777655      68999998765421  11211  123445678889999854443 443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.43  E-value=1.1e-09  Score=85.70  Aligned_cols=229  Identities=10%  Similarity=0.082  Sum_probs=145.8

Q ss_pred             CcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeee--------------------eeeceEEEEEeccCCeEEEe
Q 023822           35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS--------------------KKYGVDLVCFTSHPTTVIYS   94 (276)
Q Consensus        35 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--------------------~~~~v~~~~~~~~~~~l~~~   94 (276)
                      ....+++|.++++++.++..++.|..|+..+++.. .+..                    ....+..+++.+++..|+++
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~   97 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV   97 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE
Confidence            34567899999987888888999999998765432 2211                    11247889998744456666


Q ss_pred             ccCCCCCceEEEEccCCceeeeecc-----cCcceEEEEecc-CCCEEEEeeC-----------------CCeEEEEecc
Q 023822           95 SKNGWDESLRLLSLHDNKYLRYFKG-----HHDRVVSLSLCS-SKDCFISGSL-----------------DRTVLLWDQR  151 (276)
Q Consensus        95 ~~~~~d~~i~~~d~~~~~~~~~~~~-----~~~~i~~~~~~~-~~~~l~~~~~-----------------d~~i~iwd~~  151 (276)
                      ..   .+.|..+|..+++. ..+..     .......+++.+ +|+++++-..                 ++.|..||..
T Consensus        98 d~---~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~  173 (322)
T 2fp8_A           98 DC---YYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS  173 (322)
T ss_dssp             ET---TTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred             EC---CCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCC
Confidence            54   44588888765532 22211     113467899999 8986665432                 3678999987


Q ss_pred             CceeeeeE-eecCCCeeEecCCCcEEEEee--CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeec--
Q 023822          152 AEKCQGLL-RVQGRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM--  226 (276)
Q Consensus       152 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--  226 (276)
                      +++..... .......++++|+++.+..+.  .+.|.+|++..........+..  ... ...+++.++|+++++...  
T Consensus       174 ~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~l~va~~~~~  250 (322)
T 2fp8_A          174 TKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGHFWVSSSEEL  250 (322)
T ss_dssp             TTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSCEEEEEEEET
T ss_pred             CCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC-CCCeEECCCCCEEEEecCcc
Confidence            76644333 334566899999997555543  6899999987533222222221  223 778999999987666544  


Q ss_pred             --------CCcEEEEECCCCcEEEEeecCCCC-CCceEEEEECCCCcEEEEecCCC
Q 023822          227 --------EGHIHVLDSFRGTLLSTYNVKPVS-RNSTLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       227 --------dg~i~i~d~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~~dg  273 (276)
                              .+.|..+|. .++.+..+....+. -..+..+++ .+++++++...++
T Consensus       251 ~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~  304 (322)
T 2fp8_A          251 DGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHG  304 (322)
T ss_dssp             TSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCS
T ss_pred             cccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCC
Confidence                    467888985 58887777632211 245666766 4566555544443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.42  E-value=6.5e-11  Score=101.66  Aligned_cols=215  Identities=13%  Similarity=0.141  Sum_probs=145.4

Q ss_pred             CEEEEeec------CCeEEEEEccCCeeeeeeeeeee--------------------------------ceEEEEEeccC
Q 023822           47 SYLVTASD------DESIRLYDVTAATCLKTINSKKY--------------------------------GVDLVCFTSHP   88 (276)
Q Consensus        47 ~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~--------------------------------~v~~~~~~~~~   88 (276)
                      ..++.++.      ++.|+.+|..+|+.+..+.....                                ....+++.+++
T Consensus       175 ~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~  254 (677)
T 1kb0_A          175 GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAEL  254 (677)
T ss_dssp             TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTT
T ss_pred             CEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCC
Confidence            45555543      68999999999998876643211                                11357888888


Q ss_pred             CeEEEeccCC----------------CCCceEEEEccCCceeeeecc--cC-------cceEEEEeccCC---CEEEEee
Q 023822           89 TTVIYSSKNG----------------WDESLRLLSLHDNKYLRYFKG--HH-------DRVVSLSLCSSK---DCFISGS  140 (276)
Q Consensus        89 ~~l~~~~~~~----------------~d~~i~~~d~~~~~~~~~~~~--~~-------~~i~~~~~~~~~---~~l~~~~  140 (276)
                      ..++++..++                +-+.|..+|..+++.+..++.  |.       .....+....+|   +.++.++
T Consensus       255 ~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~  334 (677)
T 1kb0_A          255 NTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAP  334 (677)
T ss_dssp             TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECC
T ss_pred             CEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEEC
Confidence            8888877521                012599999999998887653  21       112223333467   6789999


Q ss_pred             CCCeEEEEeccCceeeeeEeecCC-------------------------------------CeeEecCCCcEEEEee-C-
Q 023822          141 LDRTVLLWDQRAEKCQGLLRVQGR-------------------------------------PAAAYDDQGLVFAVAF-G-  181 (276)
Q Consensus       141 ~d~~i~iwd~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~l~~~~-d-  181 (276)
                      .+|.++++|.++++.+..+....+                                     ..++++|+..++.+.. + 
T Consensus       335 ~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~  414 (677)
T 1kb0_A          335 KNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNV  414 (677)
T ss_dssp             TTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEEC
T ss_pred             CCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhc
Confidence            999999999999988765532211                                     1467888876665532 1 


Q ss_pred             ------------------------------------------CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCc
Q 023822          182 ------------------------------------------GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR  219 (276)
Q Consensus       182 ------------------------------------------~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  219 (276)
                                                                +.|..||+.+++.    ..... +..++....+...+.
T Consensus       415 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~----~W~~~-~~~~~~~g~~~~~g~  489 (677)
T 1kb0_A          415 PVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKA----AWSVE-HVSPWNGGTLTTAGN  489 (677)
T ss_dssp             CCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEE----EEEEE-ESSSCCCCEEEETTT
T ss_pred             ceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcE----EeecC-CCCCCcCcceEeCCC
Confidence                                                      6799999988664    33322 223445556677788


Q ss_pred             EEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEE
Q 023822          220 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS  268 (276)
Q Consensus       220 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  268 (276)
                      .++.++.||.+++||..+++.+..+....  ...-.-+.|.++|+.+++
T Consensus       490 ~v~~g~~dg~l~a~D~~tG~~lw~~~~~~--~~~~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          490 VVFQGTADGRLVAYHAATGEKLWEAPTGT--GVVAAPSTYMVDGRQYVS  536 (677)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECSS--CCCSCCEEEEETTEEEEE
T ss_pred             EEEEECCCCcEEEEECCCCceeeeeeCCC--CcccCCEEEEeCCEEEEE
Confidence            88889999999999999999999998432  222233566788864433

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.41  E-value=5.4e-10  Score=89.33  Aligned_cols=188  Identities=13%  Similarity=0.130  Sum_probs=128.1

Q ss_pred             EEEEEEcCCCCEEEEeecC------CeEEEEEccCCeeeeeeeeeeec---eEEEEEeccCCeEEEeccC----------
Q 023822           37 ISSMDFHKSSSYLVTASDD------ESIRLYDVTAATCLKTINSKKYG---VDLVCFTSHPTTVIYSSKN----------   97 (276)
Q Consensus        37 v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~~~----------   97 (276)
                      -..+...|+| +++++..+      +.|.+.|.++++.+.++.....+   -..+.|+|+++.++++.-.          
T Consensus       140 Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~  218 (462)
T 2ece_A          140 LHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLK  218 (462)
T ss_dssp             EEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCC
T ss_pred             ccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccc
Confidence            4457788999 66666555      78999999999999888643222   3458889999988888410          


Q ss_pred             ------CCCCceEEEEccCCceeeeeccc-C-cceEEEEe--ccCCCEEEEee------CCCeEEEEeccCcee--eeeE
Q 023822           98 ------GWDESLRLLSLHDNKYLRYFKGH-H-DRVVSLSL--CSSKDCFISGS------LDRTVLLWDQRAEKC--QGLL  159 (276)
Q Consensus        98 ------~~d~~i~~~d~~~~~~~~~~~~~-~-~~i~~~~~--~~~~~~l~~~~------~d~~i~iwd~~~~~~--~~~~  159 (276)
                            ....+|.+||+.+++.+.++... . .....+.|  +|+++++++++      .+++|.+|....++.  .+.+
T Consensus       219 ~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vI  298 (462)
T 2ece_A          219 LEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVI  298 (462)
T ss_dssp             TTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEE
T ss_pred             hhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEE
Confidence                  12689999999998887777642 1 23445555  99999777666      456887766544321  1111


Q ss_pred             ---e-----------------ecCCCeeEecCCCcEEEEee--CCeEEEEecccCCCCC-eeeeeecCC-----------
Q 023822          160 ---R-----------------VQGRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEKGP-FDIFSVGGD-----------  205 (276)
Q Consensus       160 ---~-----------------~~~~~~~~~~~~~~~l~~~~--d~~i~~~d~~~~~~~~-~~~~~~~~~-----------  205 (276)
                         .                 ......+.+++++++|.++.  .+.|.+||+....... .......+.           
T Consensus       299 di~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~  378 (462)
T 2ece_A          299 EIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHK  378 (462)
T ss_dssp             EECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCC
T ss_pred             eCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccccccc
Confidence               0                 13356789999999999888  6999999986432211 112222211           


Q ss_pred             -CCCceEEEECCCCcEEEEee
Q 023822          206 -ISDANVVKFSNDGRLMLLTT  225 (276)
Q Consensus       206 -~~~i~~~~~~~~~~~l~~~~  225 (276)
                       ......++++|+|++|+++.
T Consensus       379 ~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          379 LTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCSCCCCEEECTTSSEEEEEC
T ss_pred             CCCCCCEEEEcCCCCEEEEEc
Confidence             01368899999999999887

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.41  E-value=1.9e-10  Score=90.87  Aligned_cols=200  Identities=10%  Similarity=0.051  Sum_probs=133.1

Q ss_pred             cCCCcEEEEEEcCCCCEEEEeec-----CCeEEEEEccCCeeeeeeeee------eeceEEEEEeccCCeEEEeccC-CC
Q 023822           32 DYNGRISSMDFHKSSSYLVTASD-----DESIRLYDVTAATCLKTINSK------KYGVDLVCFTSHPTTVIYSSKN-GW   99 (276)
Q Consensus        32 ~h~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~~-~~   99 (276)
                      +|...+..++++++++++++-..     ++.|.+||+.+++.+..+...      ...+..+++.+++..++++... +.
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~  143 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD  143 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence            45678999999999886665543     578999999999877766532      2346889999876666554320 01


Q ss_pred             CCceEEEEccCCceeeeecccC-----------------------------cceEEEEeccCCCEEEEeeCCC-eEEEEe
Q 023822          100 DESLRLLSLHDNKYLRYFKGHH-----------------------------DRVVSLSLCSSKDCFISGSLDR-TVLLWD  149 (276)
Q Consensus       100 d~~i~~~d~~~~~~~~~~~~~~-----------------------------~~i~~~~~~~~~~~l~~~~~d~-~i~iwd  149 (276)
                      ++.|.+||+.+++..+.+..|.                             ..+..++|+|+++.|+.+..++ .+..++
T Consensus       144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~  223 (343)
T 2qe8_A          144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK  223 (343)
T ss_dssp             GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence            7899999998877655553321                             2357899999999888877665 555555


Q ss_pred             ccC---c-----eee---eeE-eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECC
Q 023822          150 QRA---E-----KCQ---GLL-RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN  216 (276)
Q Consensus       150 ~~~---~-----~~~---~~~-~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~  216 (276)
                      ...   +     +..   ... .......+++++++.++++.. ++.|.+||..+++   ............+.+++|.+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~---~~~~~~~~~~~~p~~va~~~  300 (343)
T 2qe8_A          224 SADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRA---YKLLVTDEKLSWTDSFNFGS  300 (343)
T ss_dssp             HHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE---EEEEEECGGGSCEEEEEECT
T ss_pred             HHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCC---EEEEEECCceecCCeeEECC
Confidence            321   1     000   111 222455799999998888877 7999999984432   11222112244678999999


Q ss_pred             CCcEEEEeecCCcEEEEE
Q 023822          217 DGRLMLLTTMEGHIHVLD  234 (276)
Q Consensus       217 ~~~~l~~~~~dg~i~i~d  234 (276)
                      +|+++++.+..+.+.+|.
T Consensus       301 ~g~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          301 DGYLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             TSCEEEEECCGGGSGGGB
T ss_pred             CCcEEEEeCccccccccc
Confidence            998887776655554443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.39  E-value=2.5e-10  Score=98.27  Aligned_cols=205  Identities=11%  Similarity=0.116  Sum_probs=138.3

Q ss_pred             CCeEEEEEccCCeeeeeeeeee-------------------------------eceEEEEEeccCCeEEEeccCCCCC--
Q 023822           55 DESIRLYDVTAATCLKTINSKK-------------------------------YGVDLVCFTSHPTTVIYSSKNGWDE--  101 (276)
Q Consensus        55 d~~i~iwd~~~~~~~~~~~~~~-------------------------------~~v~~~~~~~~~~~l~~~~~~~~d~--  101 (276)
                      ++.|+.||..+|+.+-.+....                               .....+++.|+...++++..   ++  
T Consensus       182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~---~g~~  258 (689)
T 1yiq_A          182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVG---NGSL  258 (689)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECC---CEES
T ss_pred             CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCC---CCCc
Confidence            6899999999999877664210                               01125788888888888876   44  


Q ss_pred             -----------------ceEEEEccCCceeeeecc--cC-------cceEEEEeccCCC---EEEEeeCCCeEEEEeccC
Q 023822          102 -----------------SLRLLSLHDNKYLRYFKG--HH-------DRVVSLSLCSSKD---CFISGSLDRTVLLWDQRA  152 (276)
Q Consensus       102 -----------------~i~~~d~~~~~~~~~~~~--~~-------~~i~~~~~~~~~~---~l~~~~~d~~i~iwd~~~  152 (276)
                                       .|..+|..+++.+..++.  |.       .+........+|+   .++.++.+|.++++|.++
T Consensus       259 w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~t  338 (689)
T 1yiq_A          259 WDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRAT  338 (689)
T ss_dssp             SCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTT
T ss_pred             cccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCC
Confidence                             499999999999887754  21       1122222223554   788999999999999999


Q ss_pred             ceeeeeEeecC-----------------------------------------CCeeEecCCCcEEEEee-----------
Q 023822          153 EKCQGLLRVQG-----------------------------------------RPAAAYDDQGLVFAVAF-----------  180 (276)
Q Consensus       153 ~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~l~~~~-----------  180 (276)
                      ++.+.......                                         -..++++|+..++.+..           
T Consensus       339 G~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~  418 (689)
T 1yiq_A          339 GELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIP  418 (689)
T ss_dssp             CCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCS
T ss_pred             CCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecc
Confidence            98763321111                                         01368888876666541           


Q ss_pred             -----------------------------------CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEee
Q 023822          181 -----------------------------------GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT  225 (276)
Q Consensus       181 -----------------------------------d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  225 (276)
                                                         ++.|..||+.+++.    ......+ .+...-.+...+.+++.++
T Consensus       419 ~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~----~W~~~~~-~~~~~g~~~tagglvf~gt  493 (689)
T 1yiq_A          419 EAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQA----AWEVPYV-TIFNGGTLSTAGNLVFEGS  493 (689)
T ss_dssp             SCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEE----EEEEEES-SSCCCCEEEETTTEEEEEC
T ss_pred             ccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCe----EeEccCC-CCccCccceECCCEEEEEC
Confidence                                               26789999988764    3333222 2333345666778899999


Q ss_pred             cCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCc-EEEEe
Q 023822          226 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM-FVISG  269 (276)
Q Consensus       226 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~  269 (276)
                      .||.++.||.++|+.+.++....  .....-+.|..+|+ |+++.
T Consensus       494 ~dg~l~a~D~~tG~~lw~~~~~~--~~~~~p~ty~~~G~qyv~~~  536 (689)
T 1yiq_A          494 ADGRVIAYAADTGEKLWEQPAAS--GVMAAPVTYSVDGEQYVTFM  536 (689)
T ss_dssp             TTSEEEEEETTTCCEEEEEECSS--CCCSCCEEEEETTEEEEEEE
T ss_pred             CCCcEEEEECCCCccceeeeCCC--CcccCceEEEECCEEEEEEE
Confidence            99999999999999999887422  22223366778886 44443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.39  E-value=3.9e-10  Score=84.75  Aligned_cols=205  Identities=9%  Similarity=0.039  Sum_probs=138.4

Q ss_pred             cccceeeccCCC--cEEEEEEcCCCCEEEEeec--CCeEEEEEccCCeeeeeeeeeee-ceEEEEEeccCCeEEEeccCC
Q 023822           24 MEVGMSFRDYNG--RISSMDFHKSSSYLVTASD--DESIRLYDVTAATCLKTINSKKY-GVDLVCFTSHPTTVIYSSKNG   98 (276)
Q Consensus        24 ~~~~~~~~~h~~--~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~~~   98 (276)
                      ++.+.++. |..  ....++|++++.+.++.+.  ++.|.++|+.+++.+..+..... ....+++  +++.+..+... 
T Consensus         9 ~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~--~g~~lyv~t~~-   84 (266)
T 2iwa_A            9 VEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTL--LNEKLYQVVWL-   84 (266)
T ss_dssp             EEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEETT-
T ss_pred             ceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEE--eCCEEEEEEec-
Confidence            34445553 443  3578999998755554443  57999999999999888753221 1223444  46677766653 


Q ss_pred             CCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeec-------CCCeeEecC
Q 023822           99 WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ-------GRPAAAYDD  171 (276)
Q Consensus        99 ~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~  171 (276)
                       ++.+.++|..+.+.+.++......  ...+++|++.++++..+++|.++|..+.+....+...       ..+.+.+. 
T Consensus        85 -~~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-  160 (266)
T 2iwa_A           85 -KNIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-  160 (266)
T ss_dssp             -CSEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred             -CCEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-
Confidence             899999999999988887533122  2335568887777777899999999998888777322       13356677 


Q ss_pred             CCcEEEEee-CCeEEEEecccCCCCCeeeeeecC-----------CCCCceEEEECCCCcEE-EEeecCCcEEEEECCCC
Q 023822          172 QGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGG-----------DISDANVVKFSNDGRLM-LLTTMEGHIHVLDSFRG  238 (276)
Q Consensus       172 ~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~  238 (276)
                      ++++++... ++.|.+.|..+++.  .....+.+           .....+.++|+|+++.+ +++...+.|...++...
T Consensus       161 dg~lyvn~~~~~~V~vID~~tg~V--~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          161 NGEVWANIWQTDCIARISAKDGTL--LGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             TTEEEEEETTSSEEEEEETTTCCE--EEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             CCEEEEecCCCCeEEEEECCCCcE--EEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            677766665 79999999998663  22222211           11345899999998655 55556788888887554

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.39  E-value=3.3e-10  Score=84.17  Aligned_cols=196  Identities=11%  Similarity=0.113  Sum_probs=126.1

Q ss_pred             eeeeeeeeee--ceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEe-eCCCe
Q 023822           68 CLKTINSKKY--GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISG-SLDRT  144 (276)
Q Consensus        68 ~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~  144 (276)
                      .+.++ .|..  -...+.|+ ++..+.+.+..+ ...|+.+|+.+++.+..+.-. .........++++.|... -.++.
T Consensus        33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g-~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~  108 (262)
T 3nol_A           33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNG-RSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGL  108 (262)
T ss_dssp             EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETT-EEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSSE
T ss_pred             EEEEe-cCCCCcccceEEEE-CCEEEEECCCCC-CceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCCE
Confidence            44555 3332  24788888 554444444411 248999999999998877543 333332233344544444 45889


Q ss_pred             EEEEeccCceeeeeEeecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCC---CCceEEEECCCCcE
Q 023822          145 VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDI---SDANVVKFSNDGRL  220 (276)
Q Consensus       145 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~  220 (276)
                      +.+||..+.+.+..+.... ....+++++..|..+. ++.|.++|..+.+..  .........   ..++.+.|. +|+.
T Consensus       109 v~v~D~~t~~~~~ti~~~~-eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~--~~I~V~~~g~~~~~lNELe~~-~G~l  184 (262)
T 3nol_A          109 GFVWNIRNLRQVRSFNYDG-EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPV--RTITVTAHGEELPELNELEWV-DGEI  184 (262)
T ss_dssp             EEEEETTTCCEEEEEECSS-CCCCEEECSSCEEECCSSSEEEEECTTTCSEE--EEEECEETTEECCCEEEEEEE-TTEE
T ss_pred             EEEEECccCcEEEEEECCC-CceEEecCCCEEEEECCCCeEEEEcCCCCeEE--EEEEeccCCccccccceeEEE-CCEE
Confidence            9999999999999885433 3344445666555555 788999999886531  122221112   234557776 7775


Q ss_pred             EEEeecCCcEEEEECCCCcEEEEeecCC---------CCCCceEEEEECCCCcEEEEecC
Q 023822          221 MLLTTMEGHIHVLDSFRGTLLSTYNVKP---------VSRNSTLEASFSPEGMFVISGRV  271 (276)
Q Consensus       221 l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------~~~~~v~~~~~s~~g~~l~~~~~  271 (276)
                      .+..-.++.|.+.|..+++.+..+....         ....-.+.++|+|+++.|++.+.
T Consensus       185 yan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          185 FANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             EEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            5555568899999999999999887421         01235689999999887776654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.38  E-value=6e-10  Score=83.71  Aligned_cols=199  Identities=13%  Similarity=0.064  Sum_probs=127.3

Q ss_pred             eeeeeeeeee-eceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCc-ceEEEEeccCCCEEEEeeCCCe
Q 023822           67 TCLKTINSKK-YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHD-RVVSLSLCSSKDCFISGSLDRT  144 (276)
Q Consensus        67 ~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~  144 (276)
                      +.+.++.... .....+.|++++ .|+.++....++.|.++|+.+++.+..+.-... ....+++.. +..+++.-.++.
T Consensus        10 ~vv~~~p~~~~~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~   87 (266)
T 2iwa_A           10 EVLNEFPHDPYAFTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNI   87 (266)
T ss_dssp             EEEEEEECCTTCCEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSE
T ss_pred             eEEEEEECCCCCCcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCE
Confidence            4455553322 235789999886 555543211168999999999998887652221 223455542 234445556889


Q ss_pred             EEEEeccCceeeeeEeecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCC---CCceEEEECCCCcE
Q 023822          145 VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDI---SDANVVKFSNDGRL  220 (276)
Q Consensus       145 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~  220 (276)
                      +.++|..+.+.+..+.........++++++.+..+. ++.|.++|..+.+.  ..........   ..++.+.|. +|+.
T Consensus        88 v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v--~~~I~Vg~~~~p~~~~nele~~-dg~l  164 (266)
T 2iwa_A           88 GFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKL--IKKHNVKYNGHRVIRLNELEYI-NGEV  164 (266)
T ss_dssp             EEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCE--EEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred             EEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcE--EEEEEECCCCcccccceeEEEE-CCEE
Confidence            999999999998888544123455666765444444 79999999988553  1122221111   235678887 7765


Q ss_pred             EEEeecCCcEEEEECCCCcEEEEeecCC----------CCCCceEEEEECCCCcEEEEec
Q 023822          221 MLLTTMEGHIHVLDSFRGTLLSTYNVKP----------VSRNSTLEASFSPEGMFVISGR  270 (276)
Q Consensus       221 l~~~~~dg~i~i~d~~~~~~~~~~~~~~----------~~~~~v~~~~~s~~g~~l~~~~  270 (276)
                      ++....++.|.+.|..+++.+..+....          ......+.++|+|+++.|++++
T Consensus       165 yvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTg  224 (266)
T 2iwa_A          165 WANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTG  224 (266)
T ss_dssp             EEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEE
T ss_pred             EEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEEC
Confidence            5555567899999999999999887310          0113568999999987655544

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.36  E-value=8.6e-09  Score=80.02  Aligned_cols=237  Identities=12%  Similarity=0.018  Sum_probs=141.4

Q ss_pred             ccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCC-Cce
Q 023822           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD-ESL  103 (276)
Q Consensus        25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d-~~i  103 (276)
                      +....+... .....++|+++++++++...++.|..||... +....+.. ......+++.++++.+++....  + ..|
T Consensus        23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~-~~~p~gia~~~dG~l~vad~~~--~~~~v   97 (306)
T 2p4o_A           23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATV-EGKVSGLAFTSNGDLVATGWNA--DSIPV   97 (306)
T ss_dssp             EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEEC-SSEEEEEEECTTSCEEEEEECT--TSCEE
T ss_pred             eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeC-CCCceeEEEcCCCcEEEEeccC--CcceE
Confidence            334444332 4577899999998777766789999999764 33333322 3468889999999855544320  2 246


Q ss_pred             EEEEccCCceeeeecc-cCcceEEEEeccCCCEEEEeeCCCeEEEEeccCcee-eeeE-----------eecCCCeeEec
Q 023822          104 RLLSLHDNKYLRYFKG-HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC-QGLL-----------RVQGRPAAAYD  170 (276)
Q Consensus       104 ~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~-----------~~~~~~~~~~~  170 (276)
                      ..++..+++....... .......++..+++..+++-..++.|..+|...++. +...           .......+  +
T Consensus        98 ~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s  175 (306)
T 2p4o_A           98 VSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--K  175 (306)
T ss_dssp             EEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--E
T ss_pred             EEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--C
Confidence            6677777765332221 122234455555554455544688999999875421 1100           00111223  7


Q ss_pred             CCCcEEEEee--CCeEEEEeccc-CCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecC
Q 023822          171 DQGLVFAVAF--GGYIRMFDARK-YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK  247 (276)
Q Consensus       171 ~~~~~l~~~~--d~~i~~~d~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  247 (276)
                      +++..|..+.  .+.|..|++.. +.......+..   ......++++++|+++++....+.|.+++.. ++........
T Consensus       176 ~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~---~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~  251 (306)
T 2p4o_A          176 RFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE---QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE  251 (306)
T ss_dssp             EETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE---SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG
T ss_pred             cCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec---cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc
Confidence            7776555554  68999999875 22111112111   1346779999999877776677899999964 6653321111


Q ss_pred             CCCCCceEEEEEC---CCCcEEEEecCCC
Q 023822          248 PVSRNSTLEASFS---PEGMFVISGRVSP  273 (276)
Q Consensus       248 ~~~~~~v~~~~~s---~~g~~l~~~~~dg  273 (276)
                       .....+++++|.   |+++.|+.++..+
T Consensus       252 -~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          252 -QGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             -GTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             -cccCCceEEEEecccCCCCEEEEECCCC
Confidence             123568899999   8987776665443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.36  E-value=7.5e-10  Score=86.82  Aligned_cols=184  Identities=11%  Similarity=0.031  Sum_probs=117.9

Q ss_pred             CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeee----eeeceEEEEEeccCCeEEEeccCC---CCCceEEE
Q 023822           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS----KKYGVDLVCFTSHPTTVIYSSKNG---WDESLRLL  106 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~~---~d~~i~~~  106 (276)
                      ...+.+++|+++++++++. .+ .|.+||..+++.......    ....+..+.+.|+++.+++.....   ..+.|..+
T Consensus        89 ~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~  166 (326)
T 2ghs_A           89 PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV  166 (326)
T ss_dssp             SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred             CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEE
Confidence            4679999999999877754 44 499999887765432221    124688999999998665543200   02455555


Q ss_pred             EccCCceeeeecccCcceEEEEeccCCCEEEEe-eCCCeEEEEecc--Cc-eee--eeE-e----ecCCCeeEecCCCcE
Q 023822          107 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISG-SLDRTVLLWDQR--AE-KCQ--GLL-R----VQGRPAAAYDDQGLV  175 (276)
Q Consensus       107 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~iwd~~--~~-~~~--~~~-~----~~~~~~~~~~~~~~~  175 (276)
                      +  +++.. .+..+......++|+|+++.++.+ +.++.|.+||+.  ++ ...  ..+ .    ......+++++++.+
T Consensus       167 ~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~l  243 (326)
T 2ghs_A          167 A--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHI  243 (326)
T ss_dssp             E--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCE
T ss_pred             e--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCE
Confidence            5  44433 333333456789999999866544 557899999986  44 211  112 1    112346889999988


Q ss_pred             EEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEEC-CCCcEEEEeecC
Q 023822          176 FAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFS-NDGRLMLLTTME  227 (276)
Q Consensus       176 l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~d  227 (276)
                      +++.. ++.|.+||.. ++.    ...+..+...+.+++|+ |+++.|++++..
T Consensus       244 wva~~~~~~v~~~d~~-g~~----~~~i~~~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          244 WNARWGEGAVDRYDTD-GNH----IARYEVPGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             EEEEETTTEEEEECTT-CCE----EEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             EEEEeCCCEEEEECCC-CCE----EEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence            87776 6889999984 221    22333344568999998 888777665443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.34  E-value=7.4e-10  Score=82.32  Aligned_cols=192  Identities=12%  Similarity=0.123  Sum_probs=131.3

Q ss_pred             cccceeeccCCCc--EEEEEEcCCCCEEEEeecCC--eEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCC
Q 023822           24 MEVGMSFRDYNGR--ISSMDFHKSSSYLVTASDDE--SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW   99 (276)
Q Consensus        24 ~~~~~~~~~h~~~--v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~   99 (276)
                      ++.++++ .|...  ...+.|+ ++.++.+.+.+|  .|+++|+++++.+..+.... ........++++.+..+...  
T Consensus        31 ~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~--  105 (262)
T 3nol_A           31 YQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWK--  105 (262)
T ss_dssp             EEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESS--
T ss_pred             eEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEee--
Confidence            4555666 34443  4788998 666667777766  89999999999988876543 33333344456677666542  


Q ss_pred             CCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeec----C---CCeeEecCC
Q 023822          100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ----G---RPAAAYDDQ  172 (276)
Q Consensus       100 d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~---~~~~~~~~~  172 (276)
                      ++.+.+||..+.+.+.++.... .-..+  +++++.|+.+..+++|.++|..+.+....+...    +   .+.+.+. +
T Consensus       106 ~~~v~v~D~~t~~~~~ti~~~~-eG~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~  181 (262)
T 3nol_A          106 NGLGFVWNIRNLRQVRSFNYDG-EGWGL--THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-D  181 (262)
T ss_dssp             SSEEEEEETTTCCEEEEEECSS-CCCCE--EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-T
T ss_pred             CCEEEEEECccCcEEEEEECCC-CceEE--ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-C
Confidence            8999999999999998887432 22333  457777777777889999999998888777321    2   2236665 6


Q ss_pred             CcEEEEee-CCeEEEEecccCCCCCeeeeeec----------CCCCCceEEEECCCCcEEEEeec
Q 023822          173 GLVFAVAF-GGYIRMFDARKYEKGPFDIFSVG----------GDISDANVVKFSNDGRLMLLTTM  226 (276)
Q Consensus       173 ~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~l~~~~~  226 (276)
                      |++++... ++.|.+.|.++++..  ....+.          ......+.|+|+|+++.|++.+.
T Consensus       182 G~lyan~w~~~~I~vIDp~tG~V~--~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          182 GEIFANVWQTNKIVRIDPETGKVT--GIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             TEEEEEETTSSEEEEECTTTCBEE--EEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             CEEEEEEccCCeEEEEECCCCcEE--EEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            77777665 789999999887631  122221          11234688999998877776664

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.27  E-value=3.2e-09  Score=78.93  Aligned_cols=181  Identities=10%  Similarity=0.079  Sum_probs=119.0

Q ss_pred             eEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEE--EEeccCCCEEEEeeCCCeEEEEeccCceee
Q 023822           79 VDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVS--LSLCSSKDCFISGSLDRTVLLWDQRAEKCQ  156 (276)
Q Consensus        79 v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~--~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  156 (276)
                      ...+.|+  +..|..+...  +|.|+.+|+.+++.+..+  -......  +++.. +++++..-.++.+.+||..+.+.+
T Consensus        57 tqGL~~~--~~~Ly~stG~--~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~  129 (268)
T 3nok_A           57 TQGLVFH--QGHFFESTGH--QGTLRQLSLESAQPVWME--RLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRE  129 (268)
T ss_dssp             EEEEEEE--TTEEEEEETT--TTEEEECCSSCSSCSEEE--ECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEE
T ss_pred             cceEEEE--CCEEEEEcCC--CCEEEEEECCCCcEEeEE--CCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEE
Confidence            4678886  3444444431  788999999999988877  2233333  44432 234444556889999999999999


Q ss_pred             eeEeecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCC---CceEEEECCCCcEEEEeecCCcEEE
Q 023822          157 GLLRVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDIS---DANVVKFSNDGRLMLLTTMEGHIHV  232 (276)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~dg~i~i  232 (276)
                      ..+...+ ....+.+++..|..+. ++.|.++|..+.+.  ........+..   .++.+.|. +|+.++..-.+..|.+
T Consensus       130 ~ti~~~~-eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v--~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~v  205 (268)
T 3nok_A          130 RTTRYSG-EGWGLCYWNGKLVRSDGGTMLTFHEPDGFAL--VGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLE  205 (268)
T ss_dssp             EEEECSS-CCCCEEEETTEEEEECSSSEEEEECTTTCCE--EEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEE
T ss_pred             EEEeCCC-ceeEEecCCCEEEEECCCCEEEEEcCCCCeE--EEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEE
Confidence            9885432 2234445566555555 89999999988653  11222222222   34567776 7765555556789999


Q ss_pred             EECCCCcEEEEeecC----------CCCCCceEEEEECCCCcEEEEec
Q 023822          233 LDSFRGTLLSTYNVK----------PVSRNSTLEASFSPEGMFVISGR  270 (276)
Q Consensus       233 ~d~~~~~~~~~~~~~----------~~~~~~v~~~~~s~~g~~l~~~~  270 (276)
                      .|..+++.+..+...          .....-.+.|+|+|+++.|+..+
T Consensus       206 IDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          206 IDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             ECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             EeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            999999999988732          01224578999999876665554

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.27  E-value=7.4e-09  Score=76.32  Aligned_cols=197  Identities=11%  Similarity=0.103  Sum_probs=124.1

Q ss_pred             eeeeeeeeee--eceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcce-EEEEeccCCCEEEEeeCCC
Q 023822           67 TCLKTINSKK--YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRV-VSLSLCSSKDCFISGSLDR  143 (276)
Q Consensus        67 ~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~d~  143 (276)
                      +.+.++ .|.  .-...+.|++  ..|..++.......|+.+|+.+++.+..+.-..... -.+++. .++.+...-.++
T Consensus        10 ~v~~~~-phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~   85 (243)
T 3mbr_X           10 RVVKRY-PHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNH   85 (243)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSS
T ss_pred             EEEEEc-CCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCC
Confidence            344455 343  3366888875  344444331114589999999999988775332211 233433 233444555688


Q ss_pred             eEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCC---CCceEEEECCCCc
Q 023822          144 TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDI---SDANVVKFSNDGR  219 (276)
Q Consensus       144 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~  219 (276)
                      .+.+||..+.+.+..+.... ....+.+++..|..+. ++.|.++|..+.+.  ........+.   ..++.+.+. +|+
T Consensus        86 ~v~v~D~~tl~~~~ti~~~~-~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~--~~~I~V~~~g~~~~~lNeLe~~-~G~  161 (243)
T 3mbr_X           86 EGFVYDLATLTPRARFRYPG-EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQ--VGSIKVTAGGRPLDNLNELEWV-NGE  161 (243)
T ss_dssp             EEEEEETTTTEEEEEEECSS-CCCEEEECSSCEEEECSSSEEEEECTTTCCE--EEEEECEETTEECCCEEEEEEE-TTE
T ss_pred             EEEEEECCcCcEEEEEeCCC-CceEEeeCCCEEEEECCCCeEEEEeCCCCeE--EEEEEEccCCcccccceeeEEe-CCE
Confidence            99999999999999885433 2334445555444444 89999999988653  1122222222   234556665 677


Q ss_pred             EEEEeecCCcEEEEECCCCcEEEEeecCC----------CCCCceEEEEECCCCcEEEEecC
Q 023822          220 LMLLTTMEGHIHVLDSFRGTLLSTYNVKP----------VSRNSTLEASFSPEGMFVISGRV  271 (276)
Q Consensus       220 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----------~~~~~v~~~~~s~~g~~l~~~~~  271 (276)
                      .++..-.+..|.+.|..+++.+..+....          ....-.+.++++|+++.|++.+.
T Consensus       162 lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          162 LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            55555567899999999999999887321          12245789999998877666543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.27  E-value=4.1e-10  Score=88.20  Aligned_cols=213  Identities=13%  Similarity=0.095  Sum_probs=135.5

Q ss_pred             CcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCcee
Q 023822           35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL  114 (276)
Q Consensus        35 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~  114 (276)
                      ..+.++...+++. |..++.+  +..+|. +++....+...........+.  +..+.+++.   ++.|..+|.. ++..
T Consensus        60 ~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~---~~~l~~~d~~-g~~~  129 (330)
T 3hxj_A           60 IIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSM---DGHLYAINTD-GTEK  129 (330)
T ss_dssp             EEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECT---TSEEEEECTT-SCEE
T ss_pred             CcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEec---CCEEEEEcCC-CCEE
Confidence            3456677766665 4445444  888885 565544443333223333333  566777776   8899999988 7776


Q ss_pred             eeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe--ecCCCeeEecCCCcEEEEeeCCeEEEEecccC
Q 023822          115 RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR--VQGRPAAAYDDQGLVFAVAFGGYIRMFDARKY  192 (276)
Q Consensus       115 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~  192 (276)
                      .....+...+.++...+++. +..++.++.|..+|.. ++....+.  ...+..+...+++.+++++  +.+..+| .++
T Consensus       130 ~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g  204 (330)
T 3hxj_A          130 WRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDG  204 (330)
T ss_dssp             EEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTS
T ss_pred             EEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCC
Confidence            66665555566777776776 5667778999999998 66554443  3345567777888877777  8899999 543


Q ss_pred             CCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCC
Q 023822          193 EKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVS  272 (276)
Q Consensus       193 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  272 (276)
                      +.    ..........+.++...++|. |..++.++.|..+| .+++.+..+..   ....+..+...++|.+ ..++.+
T Consensus       205 ~~----~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~-~~g~~~~~~~~---~~~~~~~~~~~~~g~l-~v~t~~  274 (330)
T 3hxj_A          205 TE----KWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAIN-PDGTEKWRFKT---GKRIESSPVIGNTDTI-YFGSYD  274 (330)
T ss_dssp             CE----EEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEEC-TTSCEEEEEEC---SSCCCSCCEECTTSCE-EEECTT
T ss_pred             cE----EEEEccCCcceeceEECCCCe-EEEEcCCCeEEEEC-CCCCEeEEeeC---CCCccccceEcCCCeE-EEecCC
Confidence            32    333334445688888998886 55566778888888 46777666652   2333344556666654 444444

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.27  E-value=4.6e-08  Score=74.29  Aligned_cols=211  Identities=10%  Similarity=0.037  Sum_probs=128.1

Q ss_pred             CEEEEeecCCeEEEEEccCCeee-----eeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccC
Q 023822           47 SYLVTASDDESIRLYDVTAATCL-----KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHH  121 (276)
Q Consensus        47 ~~l~~~~~d~~i~iwd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~  121 (276)
                      .+|+.+.. +.|+.++++.....     ..+......+..++|.+++..++.+...  .+.|..+++........+....
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~--~~~I~~~~~~g~~~~~~~~~~~   78 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDIS--EPSIGRASLHGGEPTTIIRQDL   78 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETT--TTEEEEEESSSCCCEEEECTTC
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECC--CCEEEEEecCCCCcEEEEECCC
Confidence            45555544 47888888754321     1222233467899999988887777653  7899999987665433333233


Q ss_pred             cceEEEEeccCCCEE-EEeeCCCeEEEEeccCceeeeeEe--ecCCCeeEecCC-CcEEEEee---CCeEEEEecccCCC
Q 023822          122 DRVVSLSLCSSKDCF-ISGSLDRTVLLWDQRAEKCQGLLR--VQGRPAAAYDDQ-GLVFAVAF---GGYIRMFDARKYEK  194 (276)
Q Consensus       122 ~~i~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~-~~~l~~~~---d~~i~~~d~~~~~~  194 (276)
                      .....+++++++..+ ++-...+.|.++++..........  ......++++|+ +.++++..   .+.|..+++.....
T Consensus        79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~  158 (267)
T 1npe_A           79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR  158 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred             CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc
Confidence            467899999976544 444557899999987543222221  234567899995 55555543   26888888764221


Q ss_pred             CCeeeeeecCCCCCceEEEECCCCcEEEEee-cCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEec
Q 023822          195 GPFDIFSVGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGR  270 (276)
Q Consensus       195 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  270 (276)
                         ... ..........++++|++..|+.+. ..+.|.++|.........+.   . ......++..  +..|+.+.
T Consensus       159 ---~~~-~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~---~-~~~P~gi~~d--~~~lyva~  225 (267)
T 1npe_A          159 ---RIL-AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE---G-LQYPFAVTSY--GKNLYYTD  225 (267)
T ss_dssp             ---EEE-ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE---C-CCSEEEEEEE--TTEEEEEE
T ss_pred             ---EEE-EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec---C-CCCceEEEEe--CCEEEEEE
Confidence               111 112234578899999876665554 56789999987544433333   1 2334566654  34444443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.26  E-value=1.4e-09  Score=80.90  Aligned_cols=189  Identities=8%  Similarity=0.034  Sum_probs=126.7

Q ss_pred             ccceeeccCCCc--EEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCc
Q 023822           25 EVGMSFRDYNGR--ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES  102 (276)
Q Consensus        25 ~~~~~~~~h~~~--v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~  102 (276)
                      +.+.++ .|...  ...+.|+. +.+..+.+.+|.|+++|+++++.+..+ .. .........++++.+..+...  ++.
T Consensus        44 ~Vv~~~-phd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~~Ly~ltw~--~~~  117 (268)
T 3nok_A           44 HIIREY-PHATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGERLYQLTWT--EGL  117 (268)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSSCEEEEESS--SCE
T ss_pred             EEEEEE-cCCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCCEEEEEEcc--CCE
Confidence            344445 34433  46888874 566677788899999999999988887 32 233333333455566655542  899


Q ss_pred             eEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeec-------CCCeeEecCCCcE
Q 023822          103 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ-------GRPAAAYDDQGLV  175 (276)
Q Consensus       103 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~  175 (276)
                      +.+||..+.+.+.++... ..-..++  ++++.|+.+..+++|.++|..+.+....+...       ..+.+.+. +|++
T Consensus       118 v~V~D~~Tl~~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~l  193 (268)
T 3nok_A          118 LFTWSGMPPQRERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVI  193 (268)
T ss_dssp             EEEEETTTTEEEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred             EEEEECCcCcEEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEE
Confidence            999999999999888743 2224444  56777777777899999999999888777321       12345555 6777


Q ss_pred             EEEee-CCeEEEEecccCCCCCeeeeeec-----------CCCCCceEEEECCCCcEEEEee
Q 023822          176 FAVAF-GGYIRMFDARKYEKGPFDIFSVG-----------GDISDANVVKFSNDGRLMLLTT  225 (276)
Q Consensus       176 l~~~~-d~~i~~~d~~~~~~~~~~~~~~~-----------~~~~~i~~~~~~~~~~~l~~~~  225 (276)
                      ++... ++.|.+.|.++++..  ....+.           ....-.+.||++|+++.|++.+
T Consensus       194 yanvw~s~~I~vIDp~TG~V~--~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          194 YANIWHSSDVLEIDPATGTVV--GVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EEEETTCSEEEEECTTTCBEE--EEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             EEEECCCCeEEEEeCCCCcEE--EEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            76665 789999999887631  112211           1223568899999876555554

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.25  E-value=2.8e-09  Score=85.17  Aligned_cols=212  Identities=5%  Similarity=0.004  Sum_probs=127.4

Q ss_pred             CEEEEeecCCeEEEEEccCCeeeeeeeeeeece-----EEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccC
Q 023822           47 SYLVTASDDESIRLYDVTAATCLKTINSKKYGV-----DLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHH  121 (276)
Q Consensus        47 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~  121 (276)
                      ..++.++.++.|..+|..+++.+..+.......     .....  .+..++++..   ++.+..+|..+++.+.......
T Consensus       144 ~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~---~g~l~~~d~~tG~~~w~~~~~~  218 (376)
T 3q7m_A          144 GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGD---NGRVSAVLMEQGQMIWQQRISQ  218 (376)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEECCT---TTEEEEEETTTCCEEEEEECCC
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEcC---CCEEEEEECCCCcEEEEEeccc
Confidence            355566667777777777777665554322111     11122  2456667766   8999999999998877664221


Q ss_pred             cc----eE---EEEecc--CCCEEEEeeCCCeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEeeCCeEEEEecccC
Q 023822          122 DR----VV---SLSLCS--SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKY  192 (276)
Q Consensus       122 ~~----i~---~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~  192 (276)
                      ..    +.   .+...|  .+..++.++.++.+..+|.++++..-.........+.. .++.+++++.++.+..+|.+++
T Consensus       219 ~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~-~~~~l~~~~~~g~l~~~d~~tG  297 (376)
T 3q7m_A          219 ATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFIV-DGNRIYLVDQNDRVMALTIDGG  297 (376)
T ss_dssp             -----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCCEEEEEE-ETTEEEEEETTCCEEEEETTTC
T ss_pred             CCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCCCCCceE-ECCEEEEEcCCCeEEEEECCCC
Confidence            10    00   011111  34567778889999999999988775554333333333 2556666666899999999886


Q ss_pred             CCCCeeeeeec-CCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEE-EEECCCCcEEEEec
Q 023822          193 EKGPFDIFSVG-GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE-ASFSPEGMFVISGR  270 (276)
Q Consensus       193 ~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~-~~~s~~g~~l~~~~  270 (276)
                      +.    ..... .....+.....  .+..|++++.+|.|+.+|..+++.+..+..   ....+.. ...  .+..|+.++
T Consensus       298 ~~----~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~---~~~~~~~~~~~--~~~~l~v~~  366 (376)
T 3q7m_A          298 VT----LWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKV---DSSGFQTEPVA--ADGKLLIQA  366 (376)
T ss_dssp             CE----EEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEEC---CTTCBCSCCEE--ETTEEEEEB
T ss_pred             cE----EEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEec---CCCcceeCCEE--ECCEEEEEe
Confidence            63    33332 11122222333  245688888999999999999999887763   2222221 122  244677777


Q ss_pred             CCCCC
Q 023822          271 VSPFS  275 (276)
Q Consensus       271 ~dg~v  275 (276)
                      .+|.+
T Consensus       367 ~~G~l  371 (376)
T 3q7m_A          367 KDGTV  371 (376)
T ss_dssp             TTSCE
T ss_pred             CCCEE
Confidence            78754

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.25  E-value=7.5e-10  Score=95.11  Aligned_cols=221  Identities=11%  Similarity=0.041  Sum_probs=144.7

Q ss_pred             CCEEEEeecCCeEEEEEccCCeeeeeeeee-e----eceEEEEEeccCCeEEEeccC---CCCCceEEEEccCCceeeee
Q 023822           46 SSYLVTASDDESIRLYDVTAATCLKTINSK-K----YGVDLVCFTSHPTTVIYSSKN---GWDESLRLLSLHDNKYLRYF  117 (276)
Q Consensus        46 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~----~~v~~~~~~~~~~~l~~~~~~---~~d~~i~~~d~~~~~~~~~~  117 (276)
                      +..|+.++.|+.|..+|..+|+.+..+... .    ..+..--.. .+..++++...   +.++.|+.+|..+++.+..+
T Consensus       128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~  206 (677)
T 1kb0_A          128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW  206 (677)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence            567888889999999999999988777654 1    112111111 24556655431   12689999999999988776


Q ss_pred             cccCcc--------------------------------eEEEEeccCCCEEEEeeCCC-------------------eEE
Q 023822          118 KGHHDR--------------------------------VVSLSLCSSKDCFISGSLDR-------------------TVL  146 (276)
Q Consensus       118 ~~~~~~--------------------------------i~~~~~~~~~~~l~~~~~d~-------------------~i~  146 (276)
                      ......                                ...++++|++.+++.+..++                   .|.
T Consensus       207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~  286 (677)
T 1kb0_A          207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV  286 (677)
T ss_dssp             ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred             ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEE
Confidence            532211                                13577888888888877664                   599


Q ss_pred             EEeccCceeeeeEeecC--------CC---eeEecCCC---cEEEEee-CCeEEEEecccCCCCCeeeeeecCC------
Q 023822          147 LWDQRAEKCQGLLRVQG--------RP---AAAYDDQG---LVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGD------  205 (276)
Q Consensus       147 iwd~~~~~~~~~~~~~~--------~~---~~~~~~~~---~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~------  205 (276)
                      .+|.++++.+-.++...        ..   .+....+|   ..++.+. +|.++++|.++++.    +......      
T Consensus       287 AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~----l~~~~~~~~~~~~  362 (677)
T 1kb0_A          287 ALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKF----ISAKNFVPVNWAS  362 (677)
T ss_dssp             EECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE----EEEEESSCCSSEE
T ss_pred             EEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCE----eccccccccCccc
Confidence            99999998876663321        11   12222356   4555555 89999999988764    1111100      


Q ss_pred             -----C------------------------CCceEEEECCCCcEEEEeec------------------------------
Q 023822          206 -----I------------------------SDANVVKFSNDGRLMLLTTM------------------------------  226 (276)
Q Consensus       206 -----~------------------------~~i~~~~~~~~~~~l~~~~~------------------------------  226 (276)
                           .                        ..-..++++|++.++++...                              
T Consensus       363 ~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  442 (677)
T 1kb0_A          363 GYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT  442 (677)
T ss_dssp             EECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred             ccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccc
Confidence                 0                        01125789998888877543                              


Q ss_pred             -------------CCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          227 -------------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       227 -------------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                                   .|.|..||+.+++.+-.+.    +..++....+..++.+++.++.||.+
T Consensus       443 g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~----~~~~~~~g~~~~~g~~v~~g~~dg~l  500 (677)
T 1kb0_A          443 AKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE----HVSPWNGGTLTTAGNVVFQGTADGRL  500 (677)
T ss_dssp             CEEECSSCCCSCCEEEEEEEETTTTEEEEEEE----ESSSCCCCEEEETTTEEEEECTTSEE
T ss_pred             ccccccccCCCCCccEEEEEeCCCCcEEeecC----CCCCCcCcceEeCCCEEEEECCCCcE
Confidence                         2789999999999988876    23344445566777788888888764

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.24  E-value=6.1e-09  Score=86.16  Aligned_cols=216  Identities=10%  Similarity=0.063  Sum_probs=146.5

Q ss_pred             EEEeecCCeEEEEEccCCeeeeeeeee---------------------------------------eeceEEEEEec---
Q 023822           49 LVTASDDESIRLYDVTAATCLKTINSK---------------------------------------KYGVDLVCFTS---   86 (276)
Q Consensus        49 l~~~~~d~~i~iwd~~~~~~~~~~~~~---------------------------------------~~~v~~~~~~~---   86 (276)
                      |.+|+..|.++|+-+.+++.+..+...                                       .+.......+.   
T Consensus        18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g   97 (595)
T 1fwx_A           18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   97 (595)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred             EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence            668889999999999888777655210                                       11223345554   


Q ss_pred             --cCCeEEEeccCCCCCceEEEEccCCceeeeecc-cCcceEEEEe-c-cCCCEEEEee------------------CCC
Q 023822           87 --HPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKG-HHDRVVSLSL-C-SSKDCFISGS------------------LDR  143 (276)
Q Consensus        87 --~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~i~~~~~-~-~~~~~l~~~~------------------~d~  143 (276)
                        |++++.+....  +..|.+.|+.+.++...+.- ....+..+++ . |+++++++++                  .++
T Consensus        98 ~~DG~~lfVnd~~--~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~  175 (595)
T 1fwx_A           98 KYDGRFLFMNDKA--NTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN  175 (595)
T ss_dssp             EEEEEEEEEEETT--TTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred             CcCCCEEEEEcCC--CCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence              88888887763  77899999999998774432 2234678887 4 8999888885                  245


Q ss_pred             eEEEEeccCceeeeeEee-cCCCeeEecCCCcEEEEee-CC--------------------------------------e
Q 023822          144 TVLLWDQRAEKCQGLLRV-QGRPAAAYDDQGLVFAVAF-GG--------------------------------------Y  183 (276)
Q Consensus       144 ~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~-d~--------------------------------------~  183 (276)
                      .+.+.|..+.+....+.. .....++++|+++++.+++ +.                                      .
T Consensus       176 ~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~  255 (595)
T 1fwx_A          176 VFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG  255 (595)
T ss_dssp             EEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred             eEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence            799999999988888854 3455789999998887777 21                                      2


Q ss_pred             EEEEecccCCCCC-eeeeeecCCCCCceEEEECCCCcEEEEee-cCCcEEEEECCCCc------------EEEEeecCCC
Q 023822          184 IRMFDARKYEKGP-FDIFSVGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGT------------LLSTYNVKPV  249 (276)
Q Consensus       184 i~~~d~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~------------~~~~~~~~~~  249 (276)
                      |.+.|.++.+... ......   .....++.++|||+++++++ .+.+|.++|+.+.+            ......    
T Consensus       256 V~VID~~~~~~~~~~~~Ipv---g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~----  328 (595)
T 1fwx_A          256 VKVVDGRKEASSLFTRYIPI---ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE----  328 (595)
T ss_dssp             EEEEECSGGGCCSSEEEEEE---ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB----
T ss_pred             EEEEeCcccCCceeEEEEec---CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC----
Confidence            4555555421111 111111   12466799999999887765 57899999998653            333443    


Q ss_pred             CCCceEEEEECCCCcEEEEecCCC
Q 023822          250 SRNSTLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       250 ~~~~v~~~~~s~~g~~l~~~~~dg  273 (276)
                      .......++|+|+|....+.-.|+
T Consensus       329 vG~gP~h~aF~~dG~aY~t~~lds  352 (595)
T 1fwx_A          329 LGLGPLHTAFDGRGNAYTSLFLDS  352 (595)
T ss_dssp             CCSCEEEEEECTTSEEEEEETTTT
T ss_pred             CCCCcceEEECCCCeEEEEEecCC
Confidence            445678899999994334444443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.23  E-value=1.7e-09  Score=93.38  Aligned_cols=197  Identities=12%  Similarity=0.067  Sum_probs=126.7

Q ss_pred             EEEEEcCCCCEEEEeecCC-------------eEEEEEccCCee----eeeeee-eeeceEEEEEeccCCeEEEeccCC-
Q 023822           38 SSMDFHKSSSYLVTASDDE-------------SIRLYDVTAATC----LKTINS-KKYGVDLVCFTSHPTTVIYSSKNG-   98 (276)
Q Consensus        38 ~~~~~~~~~~~l~~~~~d~-------------~i~iwd~~~~~~----~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~-   98 (276)
                      ..++|+ |++.|+.++.+.             .|++|++.++..    +..... +......+.|+|++++++.....+ 
T Consensus       178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~  256 (693)
T 3iuj_A          178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST  256 (693)
T ss_dssp             CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred             ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC
Confidence            568999 999999888774             399999876542    222233 344577899999999987655422 


Q ss_pred             CCCceEEEEccCCc-eeeeecccCcceEEEEeccCCCEEEEee-CC---CeEEEEeccCcee--eeeEeecCCCeeEecC
Q 023822           99 WDESLRLLSLHDNK-YLRYFKGHHDRVVSLSLCSSKDCFISGS-LD---RTVLLWDQRAEKC--QGLLRVQGRPAAAYDD  171 (276)
Q Consensus        99 ~d~~i~~~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d---~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~  171 (276)
                      ....|+++|+.++. ....+..+....... |++++..|+..+ .+   +.|..+|+.++..  ...+..+....+.+++
T Consensus       257 ~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~s~  335 (693)
T 3iuj_A          257 SGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVLTVHS  335 (693)
T ss_dssp             SCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEE
T ss_pred             CCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEEEEEE
Confidence            23589999998764 345555566555554 666666554443 33   6799999987654  2233212212228888


Q ss_pred             CCcEEEEee--CC--eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecC----CcEEEEECCCCcE
Q 023822          172 QGLVFAVAF--GG--YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME----GHIHVLDSFRGTL  240 (276)
Q Consensus       172 ~~~~l~~~~--d~--~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~  240 (276)
                      ++..|+...  ++  .|++||+....   .....+ .....+..+.++|+++.++....+    +.++.||+.+++.
T Consensus       336 ~g~~lv~~~~~~g~~~l~~~d~~g~~---~~~l~~-p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          336 GSGYLFAEYMVDATARVEQFDYEGKR---VREVAL-PGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             ETTEEEEEEEETTEEEEEEECTTSCE---EEEECC-SSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             ECCEEEEEEEECCeeEEEEEECCCCe---eEEeec-CCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence            887776665  44  78899887432   112222 223456667788888766665444    7899999887764

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.23  E-value=2.6e-12  Score=102.51  Aligned_cols=146  Identities=16%  Similarity=0.136  Sum_probs=83.5

Q ss_pred             cCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeec--C-
Q 023822           87 HPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ--G-  163 (276)
Q Consensus        87 ~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~-  163 (276)
                      ++..+++++.   |+.|+.||..+++.+..+..  +.+.+..+..++..+++++.|+.|+.||.++++.+..+...  . 
T Consensus         8 ~~~~v~~gs~---dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~   82 (369)
T 2hz6_A            8 PETLLFVSTL---DGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPEL   82 (369)
T ss_dssp             CTTEEEEEET---TSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHH
T ss_pred             eCCEEEEEcC---CCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccc
Confidence            5678888887   99999999999999988875  45555555667778888889999999999888765444211  0 


Q ss_pred             C-CeeEecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEE
Q 023822          164 R-PAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS  242 (276)
Q Consensus       164 ~-~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  242 (276)
                      + ....+..++.+++++.++.++.||.++++.    ......+.    ...++|++..+++++.|+.|+.||..+|+.+.
T Consensus        83 ~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~----~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W  154 (369)
T 2hz6_A           83 VQASPCRSSDGILYMGKKQDIWYVIDLLTGEK----QQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRW  154 (369)
T ss_dssp             HTTCSCC-----CCCCEEEEEEEEECCC------------------------------EEEEEEEEEEECCCSSSSSCCC
T ss_pred             cccCceEecCCEEEEEeCCCEEEEEECCCCcE----EEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEE
Confidence            1 111222345555555589999999998775    22222221    23556788889999999999999999998876


Q ss_pred             Eee
Q 023822          243 TYN  245 (276)
Q Consensus       243 ~~~  245 (276)
                      .+.
T Consensus       155 ~~~  157 (369)
T 2hz6_A          155 NAT  157 (369)
T ss_dssp             EEE
T ss_pred             eEe
Confidence            654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.20  E-value=1.9e-09  Score=92.75  Aligned_cols=226  Identities=10%  Similarity=0.052  Sum_probs=141.4

Q ss_pred             CCEEEEeecCCeEEEEEccCCeeeeeeeee-e-eceEEEEEec--cCCeEEEeccC---CCCCceEEEEccCCceeeeec
Q 023822           46 SSYLVTASDDESIRLYDVTAATCLKTINSK-K-YGVDLVCFTS--HPTTVIYSSKN---GWDESLRLLSLHDNKYLRYFK  118 (276)
Q Consensus        46 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~-~~v~~~~~~~--~~~~l~~~~~~---~~d~~i~~~d~~~~~~~~~~~  118 (276)
                      +..++.++.|+.|..+|.++|+.+-.+... . .....+..+|  .+..++++...   +.++.|..||..+++.+..+.
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  200 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY  200 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence            457888889999999999999988776542 1 0001111111  13445555421   126899999999999887764


Q ss_pred             ccC-------------------------------cceEEEEeccCCCEEEEeeCCCe-------------------EEEE
Q 023822          119 GHH-------------------------------DRVVSLSLCSSKDCFISGSLDRT-------------------VLLW  148 (276)
Q Consensus       119 ~~~-------------------------------~~i~~~~~~~~~~~l~~~~~d~~-------------------i~iw  148 (276)
                      ...                               .....++++|+..+++.++.++.                   |..+
T Consensus       201 ~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~Al  280 (689)
T 1yiq_A          201 TVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAV  280 (689)
T ss_dssp             SSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEE
T ss_pred             ccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence            210                               01125778888888888887764                   9999


Q ss_pred             eccCceeeeeEeecC--C------C-ee--EecCCCc---EEEEee-CCeEEEEecccCCCCCee-------eeee----
Q 023822          149 DQRAEKCQGLLRVQG--R------P-AA--AYDDQGL---VFAVAF-GGYIRMFDARKYEKGPFD-------IFSV----  202 (276)
Q Consensus       149 d~~~~~~~~~~~~~~--~------~-~~--~~~~~~~---~l~~~~-d~~i~~~d~~~~~~~~~~-------~~~~----  202 (276)
                      |.++++.+-.+....  .      . .+  ....+++   .++.+. +|.++++|.++++.....       ....    
T Consensus       281 D~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~  360 (689)
T 1yiq_A          281 NADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKT  360 (689)
T ss_dssp             ETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTT
T ss_pred             EccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccC
Confidence            999998876663321  0      1 11  1112453   555555 899999999887641000       0000    


Q ss_pred             -------------cCC-----------CCCceEEEECCCCcEEEEeec--------------------------------
Q 023822          203 -------------GGD-----------ISDANVVKFSNDGRLMLLTTM--------------------------------  226 (276)
Q Consensus       203 -------------~~~-----------~~~i~~~~~~~~~~~l~~~~~--------------------------------  226 (276)
                                   ...           ...-..++++|+..++++...                                
T Consensus       361 ~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p  440 (689)
T 1yiq_A          361 GRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMP  440 (689)
T ss_dssp             TEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCC
T ss_pred             CCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccC
Confidence                         000           001223789998877776532                                


Q ss_pred             -------------CCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          227 -------------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       227 -------------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                                   +|.|+.||+.+++.+-.+..    ..+...-.+...+.+++.|+.||++
T Consensus       441 ~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~----~~~~~~g~~~tagglvf~gt~dg~l  498 (689)
T 1yiq_A          441 EGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY----VTIFNGGTLSTAGNLVFEGSADGRV  498 (689)
T ss_dssp             SSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE----SSSCCCCEEEETTTEEEEECTTSEE
T ss_pred             cccccCCCCCCCcceeEEEEECCCCCeEeEccC----CCCccCccceECCCEEEEECCCCcE
Confidence                         37799999999999888773    2233334556677788888888864

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.19  E-value=2.2e-08  Score=80.01  Aligned_cols=190  Identities=9%  Similarity=0.039  Sum_probs=120.7

Q ss_pred             CCCEEEEeecCCeEEEEEccCCeeeeeeeeee---------eceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceee
Q 023822           45 SSSYLVTASDDESIRLYDVTAATCLKTINSKK---------YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR  115 (276)
Q Consensus        45 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~  115 (276)
                      .+..+++++.++.|..+|.++++.+..+....         ..+.. ....++..+++++.   ++.|..+|..+++.+.
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~---~g~l~a~d~~tG~~~W  127 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSE---KAQVYALNTSDGTVAW  127 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEET---TSEEEEEETTTCCEEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcC---CCEEEEEECCCCCEEE
Confidence            35678888889999999999998876655421         12222 22235667777776   8999999999999887


Q ss_pred             eecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecC-C------CeeEecCCCcEEEEeeCCeEEEEe
Q 023822          116 YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-R------PAAAYDDQGLVFAVAFGGYIRMFD  188 (276)
Q Consensus       116 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~------~~~~~~~~~~~l~~~~d~~i~~~d  188 (276)
                      ..............  .+..++.++.++.|..+|.++++.+-...... .      ...... ++.+++...++.+..+|
T Consensus       128 ~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~v~~g~~~g~l~~~d  204 (376)
T 3q7m_A          128 QTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-FGAAVVGGDNGRVSAVL  204 (376)
T ss_dssp             EEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-TTEEEECCTTTEEEEEE
T ss_pred             EEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-CCEEEEEcCCCEEEEEE
Confidence            76543322222222  24477888889999999999988776653321 1      112222 45555555589999999


Q ss_pred             cccCCCCCeeeeeecCCC--C-----CceEEEECC--CCcEEEEeecCCcEEEEECCCCcEEEEee
Q 023822          189 ARKYEKGPFDIFSVGGDI--S-----DANVVKFSN--DGRLMLLTTMEGHIHVLDSFRGTLLSTYN  245 (276)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~--~-----~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  245 (276)
                      .++++.    ........  .     .+..+...|  .+..++.++.++.+..+|..+++.+....
T Consensus       205 ~~tG~~----~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~  266 (376)
T 3q7m_A          205 MEQGQM----IWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRE  266 (376)
T ss_dssp             TTTCCE----EEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEEC
T ss_pred             CCCCcE----EEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeecc
Confidence            987653    22211110  0     000011111  24567778889999999999999886665

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.19  E-value=2.2e-08  Score=73.85  Aligned_cols=192  Identities=10%  Similarity=0.054  Sum_probs=126.7

Q ss_pred             cccceeeccCCC--cEEEEEEcCCCCEEEEeecC--CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCC
Q 023822           24 MEVGMSFRDYNG--RISSMDFHKSSSYLVTASDD--ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW   99 (276)
Q Consensus        24 ~~~~~~~~~h~~--~v~~~~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~   99 (276)
                      ++.+.++ .|..  -...+.|++ +.+..+.+.+  ..|+.+|+++++.+..+.... ........+.++.+......  
T Consensus         9 ~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-~~fgeGi~~~~~~ly~ltw~--   83 (243)
T 3mbr_X            9 YRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP-PYFGAGIVAWRDRLIQLTWR--   83 (243)
T ss_dssp             EEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESS--
T ss_pred             eEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-CcceeEEEEeCCEEEEEEee--
Confidence            3444555 4543  466899986 5555666664  489999999999988876443 22223333345666665542  


Q ss_pred             CCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeec-------CCCeeEecCC
Q 023822          100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ-------GRPAAAYDDQ  172 (276)
Q Consensus       100 d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~  172 (276)
                      ++.+.+||..+.+.+.++.... .-..++  +++..|+.+..+++|.++|..+.+.+..+...       ..+.+.+. +
T Consensus        84 ~~~v~v~D~~tl~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~  159 (243)
T 3mbr_X           84 NHEGFVYDLATLTPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-N  159 (243)
T ss_dssp             SSEEEEEETTTTEEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred             CCEEEEEECCcCcEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-C
Confidence            8999999999999998887433 224444  56776776677899999999998888777321       22234444 6


Q ss_pred             CcEEEEee-CCeEEEEecccCCCCCeeeeeec-----------CCCCCceEEEECCCCcEEEEeec
Q 023822          173 GLVFAVAF-GGYIRMFDARKYEKGPFDIFSVG-----------GDISDANVVKFSNDGRLMLLTTM  226 (276)
Q Consensus       173 ~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~-----------~~~~~i~~~~~~~~~~~l~~~~~  226 (276)
                      +++++... +..|.+.|.++++..  ....+.           ....-.+.|+++|+++.|++.+.
T Consensus       160 G~lyanvw~s~~I~vIDp~tG~V~--~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          160 GELLANVWLTSRIARIDPASGKVV--AWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             TEEEEEETTTTEEEEECTTTCBEE--EEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             CEEEEEECCCCeEEEEECCCCCEE--EEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            77776665 789999999987631  112211           11235688999998766666553

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.09  E-value=7.9e-08  Score=82.57  Aligned_cols=206  Identities=12%  Similarity=0.128  Sum_probs=133.4

Q ss_pred             CCeEEEEEccCCeeeeeeeeee-------------------------------eceEEEEEeccCCeEEEeccCCCCC--
Q 023822           55 DESIRLYDVTAATCLKTINSKK-------------------------------YGVDLVCFTSHPTTVIYSSKNGWDE--  101 (276)
Q Consensus        55 d~~i~iwd~~~~~~~~~~~~~~-------------------------------~~v~~~~~~~~~~~l~~~~~~~~d~--  101 (276)
                      +|.|..+|..+|+.+-.+....                               .....+++.+....++++..   ++  
T Consensus       177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~---~g~~  253 (668)
T 1kv9_A          177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTG---NGSP  253 (668)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECC---CEES
T ss_pred             CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCC---CCCc
Confidence            5899999999999887764210                               01124678888888888765   43  


Q ss_pred             -----------------ceEEEEccCCceeeeecc--cC-------cceEEEEeccCCC---EEEEeeCCCeEEEEeccC
Q 023822          102 -----------------SLRLLSLHDNKYLRYFKG--HH-------DRVVSLSLCSSKD---CFISGSLDRTVLLWDQRA  152 (276)
Q Consensus       102 -----------------~i~~~d~~~~~~~~~~~~--~~-------~~i~~~~~~~~~~---~l~~~~~d~~i~iwd~~~  152 (276)
                                       .|..+|..+++.+..++.  |.       .+.....+..+++   .++.++.+|.++++|.++
T Consensus       254 w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~t  333 (668)
T 1kv9_A          254 WNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTN  333 (668)
T ss_dssp             SCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTT
T ss_pred             cccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCC
Confidence                             499999999999887754  22       2222223334665   688999999999999999


Q ss_pred             ceeeeeEeecC--------------------------------------CCeeEecCCCcEEEEe---------------
Q 023822          153 EKCQGLLRVQG--------------------------------------RPAAAYDDQGLVFAVA---------------  179 (276)
Q Consensus       153 ~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~l~~~---------------  179 (276)
                      ++.+.......                                      -..++++|+..++.+.               
T Consensus       334 G~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~  413 (668)
T 1kv9_A          334 GKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDF  413 (668)
T ss_dssp             CCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGC
T ss_pred             CCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeecccc
Confidence            98773331111                                      0126777776554431               


Q ss_pred             ----------------------eCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCC
Q 023822          180 ----------------------FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR  237 (276)
Q Consensus       180 ----------------------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  237 (276)
                                            .++.|..||+.+++.    ...... ..+.....+...+.++++++.|+.++.||.++
T Consensus       414 ~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~----~W~~~~-~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~t  488 (668)
T 1kv9_A          414 VTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKA----AWKVPY-PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADK  488 (668)
T ss_dssp             CCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEE----EEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred             ccccccccCccccccCCCCCCCccceEEEEeCCCCcE----EEEccC-CCCCcCceeEeCCCEEEEECCcccchhhhhhc
Confidence                                  137799999988664    222222 12333334455677888999999999999999


Q ss_pred             CcEEEEeecCCCCCCceEEEEECCCCc-EEEEec
Q 023822          238 GTLLSTYNVKPVSRNSTLEASFSPEGM-FVISGR  270 (276)
Q Consensus       238 ~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~  270 (276)
                      |+.+..+....+...  .-+.+..+|+ +++.++
T Consensus       489 G~~l~~~~~~~~~~~--~p~~~~~~G~~yva~~~  520 (668)
T 1kv9_A          489 GEALWQFEAQSGIVA--APMTFELAGRQYVAIMA  520 (668)
T ss_dssp             CCEEEEEECSSCCCS--CCEEEEETTEEEEEEEE
T ss_pred             ChhheEecCCCCccc--CceEEEECCEEEEEEEe
Confidence            999998874321111  2234456776 444443

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.07  E-value=7.2e-07  Score=70.48  Aligned_cols=204  Identities=6%  Similarity=0.020  Sum_probs=128.4

Q ss_pred             CcEEEEEEcCCCCEEE-EeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCce
Q 023822           35 GRISSMDFHKSSSYLV-TASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY  113 (276)
Q Consensus        35 ~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~  113 (276)
                      ..+..++|++.+..|+ +-...+.|..+++........+.........+++.+.+..|+.+...  .+.|.+.++.....
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~--~~~I~~~~~dG~~~  150 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSG--TSRIEVANLDGAHR  150 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETT--TTEEEEEETTSCSC
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCC--CCeEEEEcCCCCce
Confidence            4467899997655555 44467889999987654333333223346788998877777666542  67899999875543


Q ss_pred             eeeecccCcceEEEEeccCCCEEE-EeeCC-CeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee--CCeEEEE
Q 023822          114 LRYFKGHHDRVVSLSLCSSKDCFI-SGSLD-RTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF--GGYIRMF  187 (276)
Q Consensus       114 ~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d-~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~--d~~i~~~  187 (276)
                      ...+...-.....++++|.+..|+ +-... +.|..+++.........  .......++++|++..|..+.  .+.|..+
T Consensus       151 ~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~  230 (349)
T 3v64_C          151 KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA  230 (349)
T ss_dssp             EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEE
Confidence            333333345568999998665444 44444 78888888754332222  223345799998665444444  6889999


Q ss_pred             ecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEee
Q 023822          188 DARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  245 (276)
Q Consensus       188 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  245 (276)
                      |+.....    .............+++ ..+.++++-...+.|..++..+|+....+.
T Consensus       231 ~~dG~~~----~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          231 NLDGSHR----KAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             ETTSCSC----EEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             eCCCCce----EEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence            9875322    1112222345677888 345555555567889999877777666654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.07  E-value=4.2e-07  Score=72.83  Aligned_cols=205  Identities=6%  Similarity=0.012  Sum_probs=129.5

Q ss_pred             CCcEEEEEEcCCCCEEE-EeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCc
Q 023822           34 NGRISSMDFHKSSSYLV-TASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK  112 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~  112 (276)
                      ...+..++|.+.+..|+ +-...+.|..+++........+.........+++.+.+..|+.+...  .+.|.+.++....
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~--~~~I~~~~~dg~~  192 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSG--TSRIEVANLDGAH  192 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETT--TTEEEECBTTSCS
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCC--CCeEEEEeCCCCc
Confidence            34577899997555554 54567889999987655433333333346778998877777666542  6788888876544


Q ss_pred             eeeeecccCcceEEEEeccCCCEEEEee-CC-CeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee--CCeEEE
Q 023822          113 YLRYFKGHHDRVVSLSLCSSKDCFISGS-LD-RTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF--GGYIRM  186 (276)
Q Consensus       113 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~--d~~i~~  186 (276)
                      ....+...-.....+++.|.+..|+.+. .. +.|..+++.........  .......++++|++..|..+.  .+.|..
T Consensus       193 ~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~  272 (386)
T 3v65_B          193 RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIER  272 (386)
T ss_dssp             CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEE
Confidence            3333333335678999998766555444 34 68888888754333222  222345799997655444444  688999


Q ss_pred             EecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEee
Q 023822          187 FDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  245 (276)
Q Consensus       187 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  245 (276)
                      +|+.....    .............+++ ..+.++++-...+.|..++..+|+.+..+.
T Consensus       273 ~d~dG~~~----~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          273 ANLDGSHR----KAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             ECTTSCSC----EEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             EeCCCCee----EEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence            99875322    1112222345677888 445555666677889999977777766665

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.05  E-value=1.3e-06  Score=68.98  Aligned_cols=213  Identities=11%  Similarity=-0.005  Sum_probs=130.6

Q ss_pred             CcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCcee
Q 023822           35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL  114 (276)
Q Consensus        35 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~  114 (276)
                      ...+|.+..+++ +|+.+. ...|+..++........+.. ...+..++|.+....|+.+...  .+.|..+++......
T Consensus        34 d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~--~~~I~r~~~~g~~~~  108 (349)
T 3v64_C           34 DRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVT--LDRILRANLNGSNVE  108 (349)
T ss_dssp             TSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETT--TTEEEEEETTSCSCE
T ss_pred             CCCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEecc--CCceEEEecCCCCce
Confidence            344566666643 444443 34588888865544333332 3357899999888888777642  788999998876544


Q ss_pred             eeecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee--C-CeEEEEe
Q 023822          115 RYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF--G-GYIRMFD  188 (276)
Q Consensus       115 ~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~--d-~~i~~~d  188 (276)
                      ..+.........+++.+.+. ++++-...+.|.+.++........+  .......++++|.+..|..+.  . +.|..++
T Consensus       109 ~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~  188 (349)
T 3v64_C          109 EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS  188 (349)
T ss_dssp             EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEe
Confidence            43333334457889987544 5555556788999998765433222  223456889998654444444  4 7888888


Q ss_pred             cccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEee-cCCcEEEEECCCCcEEEEeecCCCCCCceEEEEE
Q 023822          189 ARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF  259 (276)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~  259 (276)
                      +.....    ...........+.++++|++..|+.+. ..+.|..+|+........+.   ........+++
T Consensus       189 ~dG~~~----~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~---~~~~~P~giav  253 (349)
T 3v64_C          189 MDGSGR----RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS---QGLPHPFAITV  253 (349)
T ss_dssp             TTSCSC----EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC---SSCSSEEEEEE
T ss_pred             CCCCCc----EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEe---CCCCCceEEEE
Confidence            765322    111122334578899998766666554 56789999976433332232   12345667777

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.04  E-value=1.1e-06  Score=65.69  Aligned_cols=199  Identities=13%  Similarity=0.161  Sum_probs=128.0

Q ss_pred             eeccCCCcEEEEEEcCCCCEEE-EeecCCeEEEEEccCCeeeeeeeee-eeceEEEEEeccCCeEEEeccCCCCCceEEE
Q 023822           29 SFRDYNGRISSMDFHKSSSYLV-TASDDESIRLYDVTAATCLKTINSK-KYGVDLVCFTSHPTTVIYSSKNGWDESLRLL  106 (276)
Q Consensus        29 ~~~~h~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~  106 (276)
                      .+.+-.+.+..++|+|+++.|+ +...++.|...|.. ++.++.+... ......+++.+++.++++.-.   ++.+.++
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~---~~~l~~~   96 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDER---DYAIYVI   96 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETT---TTEEEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECC---CCcEEEE
Confidence            4556567899999999766554 56778889999987 8877776432 245778888888765555433   7889999


Q ss_pred             EccCCcee---eeec------ccCcceEEEEeccCCCEEEEeeCCCeEEEEeccC---ceeeeeE---------eecCCC
Q 023822          107 SLHDNKYL---RYFK------GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA---EKCQGLL---------RVQGRP  165 (276)
Q Consensus       107 d~~~~~~~---~~~~------~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~---------~~~~~~  165 (276)
                      ++.....+   ....      ..+.....++|+|+++.|+++.......+|.++.   ......+         ......
T Consensus        97 ~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S  176 (255)
T 3qqz_A           97 SLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVS  176 (255)
T ss_dssp             EECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCC
T ss_pred             EcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCce
Confidence            87654421   2221      2344568999999987777666655445555431   1111111         223456


Q ss_pred             eeEecCCC-cEEEEee-CCeEEEEecccCCCCCeeeeeecCC-------CCCceEEEECCCCcEEEEeecCCcEEEEEC
Q 023822          166 AAAYDDQG-LVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGD-------ISDANVVKFSNDGRLMLLTTMEGHIHVLDS  235 (276)
Q Consensus       166 ~~~~~~~~-~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  235 (276)
                      .++++|.. ++++.+. ++.+..+|....   ......+...       ....-.|+|.++|+ |+..++-+.++.+.-
T Consensus       177 ~l~~dp~tg~lliLS~~s~~L~~~d~~g~---~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~  251 (255)
T 3qqz_A          177 GAEFNQQKNTLLVLSHESRALQEVTLVGE---VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTP  251 (255)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTCC---EEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC
T ss_pred             eEEEcCCCCeEEEEECCCCeEEEEcCCCC---EEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEe
Confidence            88999864 5666665 688999997752   2333333321       13567899999998 555577777777753

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.04  E-value=6e-07  Score=72.95  Aligned_cols=230  Identities=12%  Similarity=0.118  Sum_probs=134.1

Q ss_pred             cEEEEEEcC-CCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCC-C-ceEEEEccCCc
Q 023822           36 RISSMDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD-E-SLRLLSLHDNK  112 (276)
Q Consensus        36 ~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d-~-~i~~~d~~~~~  112 (276)
                      ....++++| ++..|+.+...+.|+.+|++.++...... .......++|+++++.|+++...+.. . .+..++. .+.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~  215 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG  215 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence            456889998 45566666555889999987766444333 44568899999999977777642111 1 2333443 332


Q ss_pred             ee--eeecccCcceEEEEecc-CCCEEEEeeCCCeEEEEeccCceeeeeEee---cCCCeeEecCCCcEEEEee--CCeE
Q 023822          113 YL--RYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRV---QGRPAAAYDDQGLVFAVAF--GGYI  184 (276)
Q Consensus       113 ~~--~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~--d~~i  184 (276)
                      ..  ..+.. ......++++| ++.++++-..++.|..++............   .....++++|+++.|..+.  .+.|
T Consensus       216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I  294 (430)
T 3tc9_A          216 FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI  294 (430)
T ss_dssp             SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred             eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence            22  22221 23456788999 676666666778999999987664333322   2355799999998544443  6899


Q ss_pred             EEEecccCCC--CCeeeeeec-C------------CCCCce-EEEEC--------CCCcEEEEeecCCcEEEEECCCCcE
Q 023822          185 RMFDARKYEK--GPFDIFSVG-G------------DISDAN-VVKFS--------NDGRLMLLTTMEGHIHVLDSFRGTL  240 (276)
Q Consensus       185 ~~~d~~~~~~--~~~~~~~~~-~------------~~~~i~-~~~~~--------~~~~~l~~~~~dg~i~i~d~~~~~~  240 (276)
                      ..++......  .....+.-. +            .-.... .++..        ++|.++++-...+.|+.++ .+|+.
T Consensus       295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v  373 (430)
T 3tc9_A          295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRV  373 (430)
T ss_dssp             EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEE
T ss_pred             EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcE
Confidence            9988764211  000111100 0            011223 45553        4466555555677899998 56654


Q ss_pred             EEEeec----CCC----------CCCceEEEEECCC-CcEEEEe
Q 023822          241 LSTYNV----KPV----------SRNSTLEASFSPE-GMFVISG  269 (276)
Q Consensus       241 ~~~~~~----~~~----------~~~~v~~~~~s~~-g~~l~~~  269 (276)
                      ......    ..+          .-.....++++|+ |.++++-
T Consensus       374 ~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD  417 (430)
T 3tc9_A          374 TTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGD  417 (430)
T ss_dssp             EEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEE
T ss_pred             EEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEE
Confidence            443321    001          0125789999995 5555443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.03  E-value=1.6e-07  Score=79.06  Aligned_cols=213  Identities=13%  Similarity=0.115  Sum_probs=131.5

Q ss_pred             CEEEEeec------CCeEEEEEccCCeeeeeeeeeeec--------------------------------------eEEE
Q 023822           47 SYLVTASD------DESIRLYDVTAATCLKTINSKKYG--------------------------------------VDLV   82 (276)
Q Consensus        47 ~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~--------------------------------------v~~~   82 (276)
                      ..++.++.      ++.|..+|..+|+.+-.+......                                      ...+
T Consensus       161 g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~  240 (571)
T 2ad6_A          161 DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWY  240 (571)
T ss_dssp             TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCC
T ss_pred             CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeE
Confidence            34555554      789999999999988766532110                                      0135


Q ss_pred             EEeccCCeEEEeccCC-------------CCCceEEEEccCCceeeeeccc--C--------cceEEEEeccCCC---EE
Q 023822           83 CFTSHPTTVIYSSKNG-------------WDESLRLLSLHDNKYLRYFKGH--H--------DRVVSLSLCSSKD---CF  136 (276)
Q Consensus        83 ~~~~~~~~l~~~~~~~-------------~d~~i~~~d~~~~~~~~~~~~~--~--------~~i~~~~~~~~~~---~l  136 (276)
                      ++.+....++.+..+.             +.+.|..+|..+++.+..++..  .        .++ -+....+|+   .+
T Consensus       241 a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v  319 (571)
T 2ad6_A          241 AYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLL  319 (571)
T ss_dssp             EEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEE
T ss_pred             EEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEE
Confidence            6666666776665310             1136999999999988776532  1        121 122224674   57


Q ss_pred             EEeeCCCeEEEEeccCceeeeeEeecC-C----------------------------------------CeeEecCCCcE
Q 023822          137 ISGSLDRTVLLWDQRAEKCQGLLRVQG-R----------------------------------------PAAAYDDQGLV  175 (276)
Q Consensus       137 ~~~~~d~~i~iwd~~~~~~~~~~~~~~-~----------------------------------------~~~~~~~~~~~  175 (276)
                      +.++.+|.++++|.++++.+-...... +                                        ..++++|+..+
T Consensus       320 ~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~  399 (571)
T 2ad6_A          320 SHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRT  399 (571)
T ss_dssp             EEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTE
T ss_pred             EEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCE
Confidence            788899999999999988765553221 0                                        13567777655


Q ss_pred             EEEee--------------------------------------CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCC
Q 023822          176 FAVAF--------------------------------------GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND  217 (276)
Q Consensus       176 l~~~~--------------------------------------d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  217 (276)
                      +.+..                                      ++.|..||..+++.    ....... .++....+...
T Consensus       400 ~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~----~W~~~~~-~~~~~~~~~t~  474 (571)
T 2ad6_A          400 LYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKA----KWTKWEK-FAAWGGTLYTK  474 (571)
T ss_dssp             EEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCE----EEEEEES-SCCCSBCEEET
T ss_pred             EEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCE----EEEecCC-CCccceeEEEC
Confidence            54432                                      36888899887664    2222211 12222223334


Q ss_pred             CcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEE
Q 023822          218 GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVI  267 (276)
Q Consensus       218 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  267 (276)
                      +..+++++.||.|+.+|.++|+.+.++.......+  .-+.+..+|+.++
T Consensus       475 gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~--~p~~~~~~G~~yv  522 (571)
T 2ad6_A          475 GGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIG--SPMTYSFKGKQYI  522 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS--CCEEEEETTEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEe--eeEEEEECCEEEE
Confidence            56677799999999999999999998874221111  1234567886444

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.02  E-value=2.9e-06  Score=66.07  Aligned_cols=207  Identities=7%  Similarity=0.022  Sum_probs=126.0

Q ss_pred             CCcEEEEEEcCCCCEEE-EeecCCeEEEEEccC---Ceeee-eeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEc
Q 023822           34 NGRISSMDFHKSSSYLV-TASDDESIRLYDVTA---ATCLK-TINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL  108 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~---~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~  108 (276)
                      ......++|+++++.|+ +-..++.|..+++..   +.... .+...-.....+++.+.+..|+.+...  .+.|.++++
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~--~~~I~~~~~  106 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV--LGTVSVADT  106 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETT--TTEEEEEET
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECC--CCEEEEEeC
Confidence            34578999998665554 445668999999875   12222 222222356789998777777666442  789999998


Q ss_pred             cCCceeeeecccCcceEEEEeccCCCEEEEeeC-C-CeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee--CC
Q 023822          109 HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-D-RTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF--GG  182 (276)
Q Consensus       109 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~--d~  182 (276)
                      ........+.........++++|.+..|+.+.. . +.|...++.........  .......+++++++..|..+.  .+
T Consensus       107 ~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~  186 (316)
T 1ijq_A          107 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH  186 (316)
T ss_dssp             TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             CCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCC
Confidence            754433333323356789999986665554443 3 68888887644322222  223455899998765554444  68


Q ss_pred             eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEee
Q 023822          183 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  245 (276)
Q Consensus       183 ~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  245 (276)
                      .|..+|+.....  ..+............+++. .+.++++-...+.|..++..+++.+..+.
T Consensus       187 ~I~~~d~dg~~~--~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~  246 (316)
T 1ijq_A          187 SISSIDVNGGNR--KTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  246 (316)
T ss_dssp             EEEEEETTSCSC--EEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             eEEEEecCCCce--EEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence            999999875322  1122221223345678875 35555555667889999987777655554

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.02  E-value=1.3e-06  Score=71.06  Aligned_cols=231  Identities=10%  Similarity=0.058  Sum_probs=133.6

Q ss_pred             cEEEEEEcCC--CCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCC-CCc-eEEEEccCC
Q 023822           36 RISSMDFHKS--SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW-DES-LRLLSLHDN  111 (276)
Q Consensus        36 ~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-d~~-i~~~d~~~~  111 (276)
                      ....++|+|+  +..|+.+...+.|+.+|..+++...... .......+++.++++ |+++...+. +.. +...+...+
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~  217 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG  217 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence            4568999984  4445555444889999988777654433 344688999999999 555543110 111 333333222


Q ss_pred             ce-eeeecccCcceEEEEecc-CCCEEEEeeCCCeEEEEeccCceeeeeE-eec---CCCeeEecCCCcEEEEee--CCe
Q 023822          112 KY-LRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLL-RVQ---GRPAAAYDDQGLVFAVAF--GGY  183 (276)
Q Consensus       112 ~~-~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~---~~~~~~~~~~~~~l~~~~--d~~  183 (276)
                      .. ...+. .-.....++++| ++.++++-..++.|+.+|..++.....+ ...   ....++++|++..|..+.  .+.
T Consensus       218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~  296 (433)
T 4hw6_A          218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC  296 (433)
T ss_dssp             TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred             eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence            11 01121 223456788999 6666666666789999998866652222 111   122599999998544444  689


Q ss_pred             EEEEecccCCC--C-Ceeeeee------------cCCCCCceEEEE---------CCCCcEEEEeecCCcEEEEECCCCc
Q 023822          184 IRMFDARKYEK--G-PFDIFSV------------GGDISDANVVKF---------SNDGRLMLLTTMEGHIHVLDSFRGT  239 (276)
Q Consensus       184 i~~~d~~~~~~--~-~~~~~~~------------~~~~~~i~~~~~---------~~~~~~l~~~~~dg~i~i~d~~~~~  239 (276)
                      |+.++......  . +......            ...-.....+++         .++|.++++-...+.|+.++. +|.
T Consensus       297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~  375 (433)
T 4hw6_A          297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR  375 (433)
T ss_dssp             EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE
T ss_pred             EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC
Confidence            99988653211  0 0111110            001124567999         777877776667788999984 664


Q ss_pred             EEEEeecC----CC----------CCCceEEEEEC-CCCcEEEEec
Q 023822          240 LLSTYNVK----PV----------SRNSTLEASFS-PEGMFVISGR  270 (276)
Q Consensus       240 ~~~~~~~~----~~----------~~~~v~~~~~s-~~g~~l~~~~  270 (276)
                      ........    .+          .-.....|+++ ++|.++++-.
T Consensus       376 v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~  421 (433)
T 4hw6_A          376 VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDC  421 (433)
T ss_dssp             EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEG
T ss_pred             EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeC
Confidence            44332110    00          01247889999 6666555543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=99.02  E-value=2e-07  Score=81.21  Aligned_cols=196  Identities=8%  Similarity=0.059  Sum_probs=110.8

Q ss_pred             cEEEEEEc-CCCCEEEEeec-C----CeEEEEEccCC-eeeeeeeeeeeceEEEEEeccCCeEEEeccCC--CCCceEEE
Q 023822           36 RISSMDFH-KSSSYLVTASD-D----ESIRLYDVTAA-TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG--WDESLRLL  106 (276)
Q Consensus        36 ~v~~~~~~-~~~~~l~~~~~-d----~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~--~d~~i~~~  106 (276)
                      .+...+|| |||++||.+.. +    .+|+++|+.++ +.+...  -......+.|+||++.|+......  ....|+++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~--~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~  252 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK--VSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH  252 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC--EEEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc--ccCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence            67889999 99998885543 2    35999999988 633211  112245789999999888876521  01368888


Q ss_pred             EccCCce--eeeec-ccCcceEEEEeccCCCEEEEeeC---CCeEEEEeccCce-ee--eeE-eec--CCCeeEecCCCc
Q 023822          107 SLHDNKY--LRYFK-GHHDRVVSLSLCSSKDCFISGSL---DRTVLLWDQRAEK-CQ--GLL-RVQ--GRPAAAYDDQGL  174 (276)
Q Consensus       107 d~~~~~~--~~~~~-~~~~~i~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~-~~--~~~-~~~--~~~~~~~~~~~~  174 (276)
                      ++.++..  ...+. ........+.|+||+++|+..+.   ...|+++|+.++. ..  ..+ ...  ....+.|+..+.
T Consensus       253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~  332 (751)
T 2xe4_A          253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSH  332 (751)
T ss_dssp             ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTE
T ss_pred             ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCE
Confidence            8877642  22222 22334567899999998776553   3468889988752 11  222 111  122333344455


Q ss_pred             EEEEee-C----CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCc--EEEEEC
Q 023822          175 VFAVAF-G----GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGH--IHVLDS  235 (276)
Q Consensus       175 ~l~~~~-d----~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~--i~i~d~  235 (276)
                      +++.+. +    ..|..+|+.+... .............+..+.+. .+.++++...++.  |.++++
T Consensus       333 l~~~t~~~~a~~~~L~~~d~~~~~~-~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          333 LVILTNEGGAVNHKLLIAPRGQPSD-WSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEEEECTTTCTTCEEEEEETTSTTC-CCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred             EEEEeCCCCCCCcEEEEEcCCCccc-ceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence            555544 3    3677777654211 11101111111134455554 2345555666775  556665

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.99  E-value=5.4e-06  Score=66.72  Aligned_cols=208  Identities=8%  Similarity=0.014  Sum_probs=129.6

Q ss_pred             CCCcEEEEEEcCCCCEEE-EeecCCeEEEEEccCC----eeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEE
Q 023822           33 YNGRISSMDFHKSSSYLV-TASDDESIRLYDVTAA----TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS  107 (276)
Q Consensus        33 h~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d  107 (276)
                      ....+..++|++.+..|+ +-...+.|+.+++...    .....+.........+++.+.+..|+.+...  .+.|.+.+
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~--~~~I~~~~  187 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV--LGTVSVAD  187 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETT--TTEEEEEC
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECC--CCeEEEEe
Confidence            345678999998655555 4445678988888652    2222233233457789998877777766542  78899999


Q ss_pred             ccCCceeeeecccCcceEEEEeccCCCEEEEeeC--CCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee--C
Q 023822          108 LHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL--DRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF--G  181 (276)
Q Consensus       108 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~--d  181 (276)
                      +........+...-.....+++.|.+..|+....  .+.|...++.........  .......+++++++..|..+.  .
T Consensus       188 ~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~  267 (400)
T 3p5b_L          188 TKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL  267 (400)
T ss_dssp             TTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             CCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCC
Confidence            8765544444434445789999996665555442  368888888754433332  223456899998765555544  6


Q ss_pred             CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEee
Q 023822          182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  245 (276)
Q Consensus       182 ~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  245 (276)
                      +.|..+|+.....  ..+............+++. .+.++++-...+.|..+|..+|+.+..+.
T Consensus       268 ~~I~~~d~dG~~~--~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          268 HSISSIDVNGGNR--KTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  328 (400)
T ss_dssp             TEEEEEETTSCCC--EEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred             CEEEEEeCCCCcc--EEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence            8999999875332  1122221223345567773 34555555667889999987887766665

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.98  E-value=1.9e-06  Score=75.69  Aligned_cols=228  Identities=10%  Similarity=0.081  Sum_probs=145.9

Q ss_pred             CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeee--------eeeceEEEEEeccCCeEEEeccCCCCCceEE
Q 023822           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS--------KKYGVDLVCFTSHPTTVIYSSKNGWDESLRL  105 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~  105 (276)
                      ...|.++...++|+ |..|+.++-|..|+..+++.......        ....|.++...+++..|.+++.   ++-|..
T Consensus       356 ~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~---~~Gl~~  431 (795)
T 4a2l_A          356 DNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTH---AGGLSI  431 (795)
T ss_dssp             CSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEET---TTEEEE
T ss_pred             CCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeC---cCceeE
Confidence            35699999988876 44567776799999876654332211        1346888888878774666665   677999


Q ss_pred             EEccCCceeeeec----ccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe--------ecCCCeeEecCCC
Q 023822          106 LSLHDNKYLRYFK----GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR--------VQGRPAAAYDDQG  173 (276)
Q Consensus       106 ~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--------~~~~~~~~~~~~~  173 (276)
                      ||..+++......    .....|.++...+++++.+. +. +.+.+||..+++......        ...+.++...+++
T Consensus       432 ~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g  509 (795)
T 4a2l_A          432 LHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLG-TL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHK  509 (795)
T ss_dssp             EETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEE-ES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTC
T ss_pred             EeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEE-ec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCC
Confidence            9988776433221    13457899988888875444 44 458899988765443221        1335577888899


Q ss_pred             cEEEEeeCCeEEEEecccCCCCCeee--eeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCC-C
Q 023822          174 LVFAVAFGGYIRMFDARKYEKGPFDI--FSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV-S  250 (276)
Q Consensus       174 ~~l~~~~d~~i~~~d~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~  250 (276)
                      .+.+++. +.+..||..+... .+..  .........|.++...++|++.+.. .. -|..||..+++.. .+....+ .
T Consensus       510 ~lWigt~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~d~~~~~~~-~~~~~~gl~  584 (795)
T 4a2l_A          510 RLWIGGE-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGT-RE-GFYCFNEKDKQIK-RYNTTNGLP  584 (795)
T ss_dssp             CEEEEES-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SS-CEEEEETTTTEEE-EECGGGTCS
T ss_pred             CEEEEeC-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEe-CC-CceeECCCCCcEE-EeCCCCCCc
Confidence            8888777 6688898875332 1000  0001123468889999999865544 44 5888997766543 3332111 2


Q ss_pred             CCceEEEEECCCCcEEEEecCCC
Q 023822          251 RNSTLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       251 ~~~v~~~~~s~~g~~l~~~~~dg  273 (276)
                      ...|.++...++|++.+++ .+|
T Consensus       585 ~~~i~~i~~d~~g~lWi~t-~~G  606 (795)
T 4a2l_A          585 NNVVYGILEDSFGRLWLST-NRG  606 (795)
T ss_dssp             CSCEEEEEECTTSCEEEEE-TTE
T ss_pred             hhheEEEEECCCCCEEEEc-CCc
Confidence            4568889999998766655 344

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.96  E-value=2.2e-06  Score=68.68  Aligned_cols=210  Identities=11%  Similarity=-0.009  Sum_probs=128.2

Q ss_pred             EEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeee
Q 023822           38 SSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF  117 (276)
Q Consensus        38 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~  117 (276)
                      .|.+..++ .+|+.+. ...|+..++.......... ....+..++|.+.+..|+.+...  .+.|..+++........+
T Consensus        80 ~C~~~~~~-~~l~~~~-~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~--~~~I~r~~~~g~~~~~~~  154 (386)
T 3v65_B           80 SCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVT--LDRILRANLNGSNVEEVV  154 (386)
T ss_dssp             CEEECSSC-CEEEEEC-BSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETT--TTEEEEEETTSCCEEEEE
T ss_pred             eECCcccc-ceeEeec-CccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCC--CCcEEEEecCCCCcEEEE
Confidence            34444443 3444443 3568888887655443333 23457899999887777777643  788999998876544433


Q ss_pred             cccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee--C-CeEEEEeccc
Q 023822          118 KGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF--G-GYIRMFDARK  191 (276)
Q Consensus       118 ~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~--d-~~i~~~d~~~  191 (276)
                      .........+++.+.+. ++++-...+.|.+.++........+  .......++++|.+..|..+.  . +.|..+++..
T Consensus       155 ~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG  234 (386)
T 3v65_B          155 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG  234 (386)
T ss_dssp             CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC
Confidence            33333456788887554 4555555778999888754433222  223456789998665544444  4 7888888765


Q ss_pred             CCCCCeeeeeecCCCCCceEEEECCCCcEEEEee-cCCcEEEEECCCCcEEEEeecCCCCCCceEEEEE
Q 023822          192 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF  259 (276)
Q Consensus       192 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~  259 (276)
                      ...    ...........+.++++|++..|+.+. ..+.|..+|+........+.   ........+++
T Consensus       235 ~~~----~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~---~~~~~P~giav  296 (386)
T 3v65_B          235 SGR----RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS---QGLPHPFAITV  296 (386)
T ss_dssp             CSC----EEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEEC---SSCSSEEEEEE
T ss_pred             CCc----EEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEE---CCCCCceEEEE
Confidence            332    122222334578999998766666554 56789999976433333332   12345667777

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.95  E-value=4.9e-07  Score=76.31  Aligned_cols=208  Identities=12%  Similarity=0.127  Sum_probs=127.6

Q ss_pred             CCeEEEEEccCCeeeeeeeeeeec-------------------------------------e-EEEEEeccCCeEEEecc
Q 023822           55 DESIRLYDVTAATCLKTINSKKYG-------------------------------------V-DLVCFTSHPTTVIYSSK   96 (276)
Q Consensus        55 d~~i~iwd~~~~~~~~~~~~~~~~-------------------------------------v-~~~~~~~~~~~l~~~~~   96 (276)
                      ++.|+.+|.++|+.+-.+......                                     + ..+++.+....++.+..
T Consensus       181 ~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g  260 (599)
T 1w6s_A          181 RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTG  260 (599)
T ss_dssp             CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred             CCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCC
Confidence            799999999999987766532211                                     0 13456667777777765


Q ss_pred             CC-------------CCCceEEEEccCCceeeeecccCc---------ceEEEEec-cCC---CEEEEeeCCCeEEEEec
Q 023822           97 NG-------------WDESLRLLSLHDNKYLRYFKGHHD---------RVVSLSLC-SSK---DCFISGSLDRTVLLWDQ  150 (276)
Q Consensus        97 ~~-------------~d~~i~~~d~~~~~~~~~~~~~~~---------~i~~~~~~-~~~---~~l~~~~~d~~i~iwd~  150 (276)
                      +.             +.+.|..+|.++++.+..++....         ...-+... .+|   +.++.++.+|.++++|.
T Consensus       261 ~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~  340 (599)
T 1w6s_A          261 NPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDR  340 (599)
T ss_dssp             CCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEET
T ss_pred             CCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEEC
Confidence            21             124799999999998877654221         11112222 466   46777889999999999


Q ss_pred             cCceeeeeEeecC-----------------------------------------CCeeEecCCCcEEEEe----------
Q 023822          151 RAEKCQGLLRVQG-----------------------------------------RPAAAYDDQGLVFAVA----------  179 (276)
Q Consensus       151 ~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~l~~~----------  179 (276)
                      ++++.+-......                                         -..++++|+..++.+.          
T Consensus       341 ~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~  420 (599)
T 1w6s_A          341 TDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEP  420 (599)
T ss_dssp             TTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEE
T ss_pred             CCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeec
Confidence            9988765543211                                         0135666665554432          


Q ss_pred             ------------------------------eCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCc
Q 023822          180 ------------------------------FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGH  229 (276)
Q Consensus       180 ------------------------------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  229 (276)
                                                    ..+.|..||+.+++.    ...... ..+...-.+...+.+++.++.||.
T Consensus       421 ~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~----~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~  495 (599)
T 1w6s_A          421 FMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDY----KWEKME-RFAVWGGTMATAGDLVFYGTLDGY  495 (599)
T ss_dssp             CCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCE----EEEEEE-SSCCCSBCEEETTTEEEEECTTSE
T ss_pred             ccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCE----EeEecC-CCCccCcceEecCCEEEEECCCCe
Confidence                                          135777788877653    222211 112221112234567778999999


Q ss_pred             EEEEECCCCcEEEEeecCCCCCCceEEEEECCCCc-EEEEe
Q 023822          230 IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM-FVISG  269 (276)
Q Consensus       230 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~  269 (276)
                      ++.||.++|+.+-+++...+...  .-+.+..+|+ |+++.
T Consensus       496 l~A~D~~tG~~lW~~~l~~g~~~--~P~~y~~~G~qyv~~~  534 (599)
T 1w6s_A          496 LKARDSDTGDLLWKFKIPSGAIG--YPMTYTHKGTQYVAIY  534 (599)
T ss_dssp             EEEEETTTCCEEEEEECSSCCCS--CCEEEEETTEEEEEEE
T ss_pred             EEEEECCCCCEEEEeeCCCCcEe--ccEEEEeCCEEEEEEE
Confidence            99999999999998874322222  2245667886 44443

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.94  E-value=8.3e-08  Score=82.44  Aligned_cols=224  Identities=13%  Similarity=0.106  Sum_probs=136.4

Q ss_pred             CCEEEEeecCCeEEEEEccCCeeeeeeeeee----eceEE-EEEeccCCeEEEeccC---CCCCceEEEEccCCceeeee
Q 023822           46 SSYLVTASDDESIRLYDVTAATCLKTINSKK----YGVDL-VCFTSHPTTVIYSSKN---GWDESLRLLSLHDNKYLRYF  117 (276)
Q Consensus        46 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----~~v~~-~~~~~~~~~l~~~~~~---~~d~~i~~~d~~~~~~~~~~  117 (276)
                      +..++.++.|+.|..+|.++|+.+-.+....    ..+.. ..+  .+..++++...   +.++.|..+|..+++.+..+
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  194 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRF  194 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence            4567888889999999999999887765421    11111 111  24455555431   12589999999999988876


Q ss_pred             cccC-------------------------------cceEEEEeccCCCEEEEeeCCC-------------------eEEE
Q 023822          118 KGHH-------------------------------DRVVSLSLCSSKDCFISGSLDR-------------------TVLL  147 (276)
Q Consensus       118 ~~~~-------------------------------~~i~~~~~~~~~~~l~~~~~d~-------------------~i~i  147 (276)
                      ....                               .....+++.|+..+++.++.++                   .|..
T Consensus       195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~A  274 (668)
T 1kv9_A          195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILA  274 (668)
T ss_dssp             ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred             cccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence            4210                               0112467888888888887766                   4999


Q ss_pred             EeccCceeeeeEeecC---------CCe--eEecCCCc---EEEEee-CCeEEEEecccCCCCCee-------eeeec--
Q 023822          148 WDQRAEKCQGLLRVQG---------RPA--AAYDDQGL---VFAVAF-GGYIRMFDARKYEKGPFD-------IFSVG--  203 (276)
Q Consensus       148 wd~~~~~~~~~~~~~~---------~~~--~~~~~~~~---~l~~~~-d~~i~~~d~~~~~~~~~~-------~~~~~--  203 (276)
                      +|.++++.+-.++...         ...  ..+..+++   .++.+. +|.++++|.++++.....       ...+.  
T Consensus       275 lD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~  354 (668)
T 1kv9_A          275 IRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLA  354 (668)
T ss_dssp             ECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTT
T ss_pred             EcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccc
Confidence            9999998876664321         111  11223554   455554 899999999887631000       00000  


Q ss_pred             ---------------------CC--CCCceEEEECCCCcEEEEe------------------------------------
Q 023822          204 ---------------------GD--ISDANVVKFSNDGRLMLLT------------------------------------  224 (276)
Q Consensus       204 ---------------------~~--~~~i~~~~~~~~~~~l~~~------------------------------------  224 (276)
                                           ..  ...-..++++|+...+++.                                    
T Consensus       355 ~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~  434 (668)
T 1kv9_A          355 TGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAA  434 (668)
T ss_dssp             TCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGG
T ss_pred             cCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCC
Confidence                                 00  0011236788876665541                                    


Q ss_pred             ecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          225 TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       225 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      ..+|.|..||+.+++.+-+...    ..+.....+...+.+++.++.||.+
T Consensus       435 ~~~g~l~A~D~~tG~~~W~~~~----~~~~~~~~~~t~gg~vf~g~~dg~l  481 (668)
T 1kv9_A          435 VVSGALLAWDPVKQKAAWKVPY----PTHWNGGTLSTAGNLVFQGTAAGQM  481 (668)
T ss_dssp             GCEEEEEEEETTTTEEEEEEEE----SSSCCCCEEEETTTEEEEECTTSEE
T ss_pred             CccceEEEEeCCCCcEEEEccC----CCCCcCceeEeCCCEEEEECCcccc
Confidence            1247899999999999877763    2223333444567778888887754

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.94  E-value=8.9e-07  Score=76.04  Aligned_cols=227  Identities=11%  Similarity=0.064  Sum_probs=131.4

Q ss_pred             EEEEcC-CCCEEEEeecCC-----------eEEEEEccCCeeee--eeee-eeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822           39 SMDFHK-SSSYLVTASDDE-----------SIRLYDVTAATCLK--TINS-KKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (276)
Q Consensus        39 ~~~~~~-~~~~l~~~~~d~-----------~i~iwd~~~~~~~~--~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~d~~i  103 (276)
                      .+++.+ ++++++.|+.+.           .+.+||..+++...  .+.. +......+++..+++.+++++..  +..+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~--~~~v  267 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGND--AKKT  267 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSS--TTCE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCC--CCce
Confidence            556677 888888887543           58899988775332  2211 12223356778899999998853  5689


Q ss_pred             EEEEccCCceeeeeccc-CcceEEEEeccCCCEEEEee-CC-----CeEEEEeccCceeeee-------Eeec-------
Q 023822          104 RLLSLHDNKYLRYFKGH-HDRVVSLSLCSSKDCFISGS-LD-----RTVLLWDQRAEKCQGL-------LRVQ-------  162 (276)
Q Consensus       104 ~~~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~-~d-----~~i~iwd~~~~~~~~~-------~~~~-------  162 (276)
                      .+||..+++-...-..+ ...-.+++..+++++++.|+ .+     ..+.+||..+.+-...       +...       
T Consensus       268 ~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~  347 (656)
T 1k3i_A          268 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYR  347 (656)
T ss_dssp             EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGT
T ss_pred             EEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceee
Confidence            99999876533221111 11223455667899888888 34     4689999876543221       0000       


Q ss_pred             --------------------------------------------------C--CCeeEec-CCCcEEEEee-CC------
Q 023822          163 --------------------------------------------------G--RPAAAYD-DQGLVFAVAF-GG------  182 (276)
Q Consensus       163 --------------------------------------------------~--~~~~~~~-~~~~~l~~~~-d~------  182 (276)
                                                                        .  ...+.+. .++++++.|. ++      
T Consensus       348 ~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~  427 (656)
T 1k3i_A          348 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDA  427 (656)
T ss_dssp             TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBC
T ss_pred             cCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCc
Confidence                                                              0  0111221 3566666654 21      


Q ss_pred             -----eEEEEecccCCCCCeeee--eecCCCCCceEEEECCCCcEEEEeecC-----------CcEEEEECCCCcEEEEe
Q 023822          183 -----YIRMFDARKYEKGPFDIF--SVGGDISDANVVKFSNDGRLMLLTTME-----------GHIHVLDSFRGTLLSTY  244 (276)
Q Consensus       183 -----~i~~~d~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~  244 (276)
                           .+.+||..+..-  ....  .+ .....-.+++..|+|++++.|+.+           ..+.+||..+.+-.. +
T Consensus       428 ~~~~~~v~~yd~~~~~W--~~~~~~~m-p~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~-~  503 (656)
T 1k3i_A          428 TTNAHIITLGEPGTSPN--TVFASNGL-YFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYK-Q  503 (656)
T ss_dssp             CCCEEEEECCSTTSCCE--EEECTTCC-SSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEE-C
T ss_pred             CCcceEEEcCCCCCCCe--eEEccCCC-CCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceee-c
Confidence                 577777665321  1111  11 111123455677899999998854           468999987765433 2


Q ss_pred             ecCCCCCCceEEEEECCCCcEEEEecC
Q 023822          245 NVKPVSRNSTLEASFSPEGMFVISGRV  271 (276)
Q Consensus       245 ~~~~~~~~~v~~~~~s~~g~~l~~~~~  271 (276)
                      ...+..........+.|+|+.++.|+.
T Consensus       504 ~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          504 NPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCCCCccccccHhhcCCCcEEEecCCC
Confidence            211112223334567799999999985

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.93  E-value=3.1e-06  Score=63.21  Aligned_cols=193  Identities=10%  Similarity=0.150  Sum_probs=122.2

Q ss_pred             eeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecc-cCcceEEEEeccCCCEEEEeeCCCeEEEEecc
Q 023822           73 NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKG-HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR  151 (276)
Q Consensus        73 ~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~  151 (276)
                      .+-...+..++|+|++..|++....  ++.|...|.. ++.++.+.- -....-.+++.+++.++++.-.++.+.++++.
T Consensus        23 ~g~~~~lSGla~~~~~~~L~aV~d~--~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           23 AGITNNISSLTWSAQSNTLFSTINK--PAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             TTCCSCEEEEEEETTTTEEEEEEET--TEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             CCcccCcceeEEeCCCCEEEEEECC--CCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            3444579999999988877765542  8889999987 777776632 22457788998888776776677899999887


Q ss_pred             Cceee---eeEee--------cCCCeeEecCCCc-EEEEeeCCeEEEEecccCCC-CCeeeee-----ecCCCCCceEEE
Q 023822          152 AEKCQ---GLLRV--------QGRPAAAYDDQGL-VFAVAFGGYIRMFDARKYEK-GPFDIFS-----VGGDISDANVVK  213 (276)
Q Consensus       152 ~~~~~---~~~~~--------~~~~~~~~~~~~~-~l~~~~d~~i~~~d~~~~~~-~~~~~~~-----~~~~~~~i~~~~  213 (276)
                      ....+   .....        .+...++++|.+. ++++.......+|.+..... ..+.+..     .......+..++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            55422   22211        1124899999884 44444433344444432100 1111211     012334678999


Q ss_pred             ECCCC-cEEEEeecCCcEEEEECCCCcEEEEeecCCCC------CCceEEEEECCCCcEEEEe
Q 023822          214 FSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS------RNSTLEASFSPEGMFVISG  269 (276)
Q Consensus       214 ~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------~~~v~~~~~s~~g~~l~~~  269 (276)
                      ++|.. ++++.......+..+|. +++.+..+....+.      -...-.++|.++|++.+++
T Consensus       180 ~dp~tg~lliLS~~s~~L~~~d~-~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs  241 (255)
T 3qqz_A          180 FNQQKNTLLVLSHESRALQEVTL-VGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS  241 (255)
T ss_dssp             EETTTTEEEEEETTTTEEEEECT-TCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE
T ss_pred             EcCCCCeEEEEECCCCeEEEEcC-CCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc
Confidence            99964 55566667788999995 57777777643221      1256889999999866653

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.93  E-value=4.8e-07  Score=76.33  Aligned_cols=160  Identities=12%  Similarity=0.130  Sum_probs=99.2

Q ss_pred             CceEEEEccCCceeeeecc--cC--------cceEEEEec-cCCC---EEEEeeCCCeEEEEeccCceeeeeEeecC-C-
Q 023822          101 ESLRLLSLHDNKYLRYFKG--HH--------DRVVSLSLC-SSKD---CFISGSLDRTVLLWDQRAEKCQGLLRVQG-R-  164 (276)
Q Consensus       101 ~~i~~~d~~~~~~~~~~~~--~~--------~~i~~~~~~-~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~-  164 (276)
                      +.|..+|..+++.+..++.  |.        .++. +... .+|+   .++.++.+|.++++|.++++.+-...... + 
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~  369 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT  369 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence            6899999999999887753  22        1111 1221 4564   78889999999999999988765542211 0 


Q ss_pred             ---------------------------------------------CeeEecCCCcEEEEee-------------------
Q 023822          165 ---------------------------------------------PAAAYDDQGLVFAVAF-------------------  180 (276)
Q Consensus       165 ---------------------------------------------~~~~~~~~~~~l~~~~-------------------  180 (276)
                                                                   ..++++|+..++.+..                   
T Consensus       370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~  449 (582)
T 1flg_A          370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA  449 (582)
T ss_dssp             SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred             ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence                                                         1345666543333321                   


Q ss_pred             ---------------CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEee
Q 023822          181 ---------------GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  245 (276)
Q Consensus       181 ---------------d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  245 (276)
                                     ++.|..||+.+++.    ....... .+...-.....+.+++.++.||.++.||.++|+.+-+++
T Consensus       450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~----~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~  524 (582)
T 1flg_A          450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKV----VWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ  524 (582)
T ss_dssp             CCCEEEEEEESCSSCSEEEEEECTTTCCE----EEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             eeccceeecCCCCCCcceEEEEECCCCCE----EEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEec
Confidence                           47788899888764    2222211 122221222245678889999999999999999999988


Q ss_pred             cCCCCCCceEEEEECCCCc-EEEE
Q 023822          246 VKPVSRNSTLEASFSPEGM-FVIS  268 (276)
Q Consensus       246 ~~~~~~~~v~~~~~s~~g~-~l~~  268 (276)
                      ...+...  .-+.|..+|+ |+++
T Consensus       525 ~~~g~~a--~P~~y~~~G~qYv~~  546 (582)
T 1flg_A          525 TGSGIVS--PPITWEQDGEQYLGV  546 (582)
T ss_dssp             CSSCCCS--CCEEEEETTEEEEEE
T ss_pred             CCCCccc--CceEEEECCEEEEEE
Confidence            4221111  2256667886 4443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.92  E-value=6.3e-06  Score=72.42  Aligned_cols=229  Identities=10%  Similarity=0.109  Sum_probs=146.6

Q ss_pred             CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeee-------eeeceEEEEEeccCCeEEEeccCCCCCceEEE
Q 023822           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS-------KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL  106 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~  106 (276)
                      ...|.++...+++.+.+ ++.++-+.+||..+++.......       ....|.++...+++... +++.   + -|.+|
T Consensus       214 ~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~---~-Gl~~~  287 (795)
T 4a2l_A          214 TKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLW-IGTF---N-DLNIY  287 (795)
T ss_dssp             CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEE-EEES---S-CEEEE
T ss_pred             CCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEE-EEeC---C-hhheE
Confidence            45688888877776554 44444488999877654332211       13568888888777644 4443   4 68899


Q ss_pred             EccCCceeeeecc-------cCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--------eecCCCeeEecC
Q 023822          107 SLHDNKYLRYFKG-------HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--------RVQGRPAAAYDD  171 (276)
Q Consensus       107 d~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--------~~~~~~~~~~~~  171 (276)
                      |..+++.......       ....|.++...++|. |..|+.++-|..|+..........        ....+.++..++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~  366 (795)
T 4a2l_A          288 HEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK  366 (795)
T ss_dssp             ETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT
T ss_pred             cCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC
Confidence            9877654332211       235699999988887 555777777999987655432211        123355777888


Q ss_pred             CCcEEEEeeCCeEEEEecccCCCCCeeeeeec-------CCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEe
Q 023822          172 QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVG-------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY  244 (276)
Q Consensus       172 ~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  244 (276)
                      ++.+.+++.++-|..||..+...   ..+...       .....|.++...++|+.|..|+.++-|..||..+++.....
T Consensus       367 ~g~lWiGt~~~Gl~~~~~~~~~~---~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~  443 (795)
T 4a2l_A          367 DKNLWIGTNDGGLNLYNPITQRF---TSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFN  443 (795)
T ss_dssp             TSCEEEEESSSCEEEECTTTCCE---EEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEEC
T ss_pred             CCCEEEEECCCCeEEEcCCCCcE---EEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEee
Confidence            89888877777899999876431   122111       12356889998888885666777777999998877654322


Q ss_pred             ec-CCCCCCceEEEEECCCCcEEEEecCCC
Q 023822          245 NV-KPVSRNSTLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       245 ~~-~~~~~~~v~~~~~s~~g~~l~~~~~dg  273 (276)
                      .. .......|.++...++|++.+... +|
T Consensus       444 ~~~~~l~~~~v~~i~~d~~g~lwigt~-~G  472 (795)
T 4a2l_A          444 QRNSQLVNENVYAILPDGEGNLWLGTL-SA  472 (795)
T ss_dssp             TTTSCCSCSCEEEEEECSSSCEEEEES-SC
T ss_pred             cCCCCcCCCeeEEEEECCCCCEEEEec-Cc
Confidence            10 001345789999998888655543 44

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.89  E-value=7.5e-06  Score=63.70  Aligned_cols=204  Identities=10%  Similarity=0.051  Sum_probs=126.4

Q ss_pred             CcEEEEEEcCCCCE-EEEeecCCeEEEEEccCCeee-eeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCc
Q 023822           35 GRISSMDFHKSSSY-LVTASDDESIRLYDVTAATCL-KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK  112 (276)
Q Consensus        35 ~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~  112 (276)
                      .....++|.+.+.. +.+-...+.|..+++..+... ..+...-.....+++.+.+..|+.+...  .+.|.++++....
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~--~~~I~~~~~dG~~  112 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSE--TNRIEVSNLDGSL  112 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETT--TTEEEEEETTSCS
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECC--CCEEEEEECCCCc
Confidence            34668999985444 455556788999998765322 1222222356788998877777666542  7889999987544


Q ss_pred             eeeeecccCcceEEEEeccCCCEEEEee--CCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee--CCeEEE
Q 023822          113 YLRYFKGHHDRVVSLSLCSSKDCFISGS--LDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF--GGYIRM  186 (276)
Q Consensus       113 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~--d~~i~~  186 (276)
                      ....+.........+++.|.+..|+.+.  ..+.|...++.........  .......+++++++..|..+.  .+.|..
T Consensus       113 ~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~  192 (318)
T 3sov_A          113 RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHK  192 (318)
T ss_dssp             CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEE
Confidence            3333333445578999998766555554  3578888887643322222  223345799998665444444  689999


Q ss_pred             EecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEee
Q 023822          187 FDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  245 (276)
Q Consensus       187 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  245 (276)
                      +|+.....  . .+ ..........+++.. +.++.+-...+.|..++..+|+....+.
T Consensus       193 ~d~dG~~~--~-~~-~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          193 SNLDGTNR--Q-AV-VKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIH  246 (318)
T ss_dssp             EETTSCSC--E-EE-ECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             EcCCCCce--E-EE-ecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence            99875332  1 11 122334566777753 3445555567889999987777655544

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.88  E-value=1.6e-06  Score=67.64  Aligned_cols=178  Identities=13%  Similarity=0.094  Sum_probs=112.0

Q ss_pred             ceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecc--------------------cCcceEEEEecc-CCCEE
Q 023822           78 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKG--------------------HHDRVVSLSLCS-SKDCF  136 (276)
Q Consensus        78 ~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~--------------------~~~~i~~~~~~~-~~~~l  136 (276)
                      ....++|.++++.++++..   ++.|..|+..+++.. .+..                    ....+..+++.+ +++ |
T Consensus        20 ~p~~i~~d~~g~~l~v~~~---~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l   94 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQ---DGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-L   94 (322)
T ss_dssp             CCCCEECCTTCSSEEEECT---TSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-E
T ss_pred             CceEEEEcCCCCEEEEEcC---CCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-E
Confidence            4567889998886777766   889999988765432 2210                    113468899997 554 5


Q ss_pred             EEeeCCCeEEEEeccCceeeeeE------eecCCCeeEecC-CCcEEEEeeC------------------CeEEEEeccc
Q 023822          137 ISGSLDRTVLLWDQRAEKCQGLL------RVQGRPAAAYDD-QGLVFAVAFG------------------GYIRMFDARK  191 (276)
Q Consensus       137 ~~~~~d~~i~iwd~~~~~~~~~~------~~~~~~~~~~~~-~~~~l~~~~d------------------~~i~~~d~~~  191 (276)
                      +.+...+.|..+|..+++.....      .......+++.+ +|+++++...                  +.|..||..+
T Consensus        95 ~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  174 (322)
T 2fp8_A           95 YIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST  174 (322)
T ss_dssp             EEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred             EEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence            55555566888987755422211      112245689999 8987776532                  6788888765


Q ss_pred             CCCCCeeeeeecCCCCCceEEEECCCCcEEEEe-ecCCcEEEEECCCCc--EEEEeecCCCCCCceEEEEECCCCcEEEE
Q 023822          192 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGT--LLSTYNVKPVSRNSTLEASFSPEGMFVIS  268 (276)
Q Consensus       192 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  268 (276)
                      ++.   ...  .........++++|+|+.|+.+ ...+.|.+|++....  ....+..   ..+ ...+++.++|++.++
T Consensus       175 ~~~---~~~--~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~---~~g-P~gi~~d~~G~l~va  245 (322)
T 2fp8_A          175 KET---TLL--LKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK---IPN-PGNIKRNADGHFWVS  245 (322)
T ss_dssp             TEE---EEE--EEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE---CSS-EEEEEECTTSCEEEE
T ss_pred             CEE---EEe--ccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe---CCC-CCCeEECCCCCEEEE
Confidence            331   111  1112346779999999866665 556889999987421  1222221   123 678899999986655


Q ss_pred             e
Q 023822          269 G  269 (276)
Q Consensus       269 ~  269 (276)
                      .
T Consensus       246 ~  246 (322)
T 2fp8_A          246 S  246 (322)
T ss_dssp             E
T ss_pred             e
Confidence            4

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.87  E-value=1.2e-05  Score=62.52  Aligned_cols=211  Identities=12%  Similarity=0.033  Sum_probs=124.8

Q ss_pred             EEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccC----CceeeeecccCcc
Q 023822           48 YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD----NKYLRYFKGHHDR  123 (276)
Q Consensus        48 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~----~~~~~~~~~~~~~  123 (276)
                      +|+.+.. ..|+..|+.+.+....+.. ......++|.+.+..++.+...  .+.|..+++..    ......+...-..
T Consensus         3 ~ll~~~~-~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~ly~~D~~--~~~I~~~~~~g~~~~~~~~~~~~~~~~~   78 (316)
T 1ijq_A            3 YLFFTNR-HEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLS--QRMICSTQLDRAHGVSSYDTVISRDIQA   78 (316)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETT--TTEEEEEEC--------CEEEECSSCSC
T ss_pred             EEEEECC-CeEEEEECCCcceEehhcC-CCceEEEEEEeCCCEEEEEECC--CCcEEEEECCCCCCCcccEEEEeCCCCC
Confidence            3444433 4689999887665444432 3457889999988777777652  78999999876    2222223222234


Q ss_pred             eEEEEeccCCC-EEEEeeCCCeEEEEeccCceeeeeEe--ecCCCeeEecCCC-cEEEEee-C-CeEEEEecccCCCCCe
Q 023822          124 VVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLR--VQGRPAAAYDDQG-LVFAVAF-G-GYIRMFDARKYEKGPF  197 (276)
Q Consensus       124 i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~-~~l~~~~-d-~~i~~~d~~~~~~~~~  197 (276)
                      ...+++.+.+. ++++-...+.|.+.|+........+.  ......++++|.+ .++.+.. . +.|..+++.....   
T Consensus        79 p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~---  155 (316)
T 1ijq_A           79 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---  155 (316)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE---
T ss_pred             cCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe---
Confidence            57889986544 55555667899999987654333332  2345688999855 4444444 3 6888888764221   


Q ss_pred             eeeeecCCCCCceEEEECCCCcEEEEee-cCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEE
Q 023822          198 DIFSVGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS  268 (276)
Q Consensus       198 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  268 (276)
                       ...........+.++++|++..|+.+. ..+.|..+|+.. .....+............+++.. +.++++
T Consensus       156 -~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg-~~~~~~~~~~~~~~~P~giav~~-~~ly~~  224 (316)
T 1ijq_A          156 -YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVFE-DKVFWT  224 (316)
T ss_dssp             -EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEET-TEEEEE
T ss_pred             -EEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC-CceEEEeecCCccCCcEEEEEEC-CEEEEE
Confidence             111122334678999999776666654 557899999864 33333321111223456777743 443333

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.83  E-value=7.6e-06  Score=64.02  Aligned_cols=229  Identities=9%  Similarity=0.043  Sum_probs=123.0

Q ss_pred             CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeee---eeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccC
Q 023822           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD  110 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~  110 (276)
                      ...+.++.|.+ +..++ ++.++.|.. ..+.|+.-....   .....+..+.+.+++..++.+.    ++.|.. ....
T Consensus        79 ~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~g~v~~-S~Dg  150 (327)
T 2xbg_A           79 DYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITN----VGAIYR-TKDS  150 (327)
T ss_dssp             CCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEET----TCCEEE-ESST
T ss_pred             CccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeC----CccEEE-EcCC
Confidence            44688999986 44444 456675544 333343322222   1223466777776666555543    554422 1222


Q ss_pred             Cceee-eecccCcceEEEEeccCCCEEEEeeCCCeEEEEec--cCceeeeeEeecCCCeeEecCCCcEEEEeeCCeEEEE
Q 023822          111 NKYLR-YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQ--RAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMF  187 (276)
Q Consensus       111 ~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~~~  187 (276)
                      ++.-. ........+..+.+.+++.+++.+...+..+-.|-  .+-+............+.+.+++.+++++.+|.+++.
T Consensus       151 G~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s  230 (327)
T 2xbg_A          151 GKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFS  230 (327)
T ss_dssp             TSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEETTTEEEEE
T ss_pred             CCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeCCceEEEe
Confidence            32222 22344567889999998887766654333333342  2222221112233456778899998888888888776


Q ss_pred             ecccCCCCCeeeeeec--CCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcE
Q 023822          188 DARKYEKGPFDIFSVG--GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF  265 (276)
Q Consensus       188 d~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  265 (276)
                      +...++.  .......  .....+..+++.+++.+++++ .+|.| .+....|+.-..+.........+.++.|.++++ 
T Consensus       231 ~~D~G~t--W~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-  305 (327)
T 2xbg_A          231 DPDNSEN--WGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-  305 (327)
T ss_dssp             ETTEEEE--ECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-
T ss_pred             cCCCCCe--eEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-
Confidence            4221111  0011111  112357889999888866665 46666 445455554444432111345678888876665 


Q ss_pred             EEEecCCCCC
Q 023822          266 VISGRVSPFS  275 (276)
Q Consensus       266 l~~~~~dg~v  275 (276)
                      +++++.+|.+
T Consensus       306 ~~~~G~~G~i  315 (327)
T 2xbg_A          306 GFILGQKGIL  315 (327)
T ss_dssp             EEEECSTTEE
T ss_pred             eEEEcCCceE
Confidence            4455566653

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.83  E-value=2e-05  Score=62.26  Aligned_cols=227  Identities=10%  Similarity=0.050  Sum_probs=125.9

Q ss_pred             CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCee--eeeee---eeeeceEEEEEecc---CCeEEEeccCCCC---Cc
Q 023822           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATC--LKTIN---SKKYGVDLVCFTSH---PTTVIYSSKNGWD---ES  102 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~~~~d---~~  102 (276)
                      -..-..++|.|+|+++++ ..+|.|++++  +++.  +..+.   ........++++|+   +..++++.....+   ..
T Consensus        30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred             CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence            345678999999985554 5679999998  4432  22121   11346789999998   6666665431001   67


Q ss_pred             eEEEEccCCc-----ee-eeec---ccCcceEEEEeccCCCEEEEeeC-------------CCeEEEEeccCc-------
Q 023822          103 LRLLSLHDNK-----YL-RYFK---GHHDRVVSLSLCSSKDCFISGSL-------------DRTVLLWDQRAE-------  153 (276)
Q Consensus       103 i~~~d~~~~~-----~~-~~~~---~~~~~i~~~~~~~~~~~l~~~~~-------------d~~i~iwd~~~~-------  153 (276)
                      |..++...++     .+ ..+.   ........++|.|+|.++++.+.             .|.|..++....       
T Consensus       107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf  186 (352)
T 2ism_A          107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF  186 (352)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred             EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence            8888876432     11 1122   11112368999999986666432             256766665531       


Q ss_pred             -----eeeeeE--eecCCCeeEecC-CCcEEEEeeC-Ce--------EEEEecccCCC------------C--Ceeeeee
Q 023822          154 -----KCQGLL--RVQGRPAAAYDD-QGLVFAVAFG-GY--------IRMFDARKYEK------------G--PFDIFSV  202 (276)
Q Consensus       154 -----~~~~~~--~~~~~~~~~~~~-~~~~l~~~~d-~~--------i~~~d~~~~~~------------~--~~~~~~~  202 (276)
                           .....+  .......++|+| ++.++++-.. +.        |.+..  .+..            .  .......
T Consensus       187 ~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~  264 (352)
T 2ism_A          187 LGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIV--PGGNYGWPRVVGRGNDPRYRDPLYFW  264 (352)
T ss_dssp             TTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred             cCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEec--cCCcCCCCcccCCCCCCCCcCCeEec
Confidence                 011111  112245789999 6777776652 22        33332  2210            0  0011122


Q ss_pred             cCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcE------EEEeecCCCCCCceEEEEECCCCcEEEEec
Q 023822          203 GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL------LSTYNVKPVSRNSTLEASFSPEGMFVISGR  270 (276)
Q Consensus       203 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  270 (276)
                      . +......++| .+|.++++.-..+.|...++.....      ...+.   .....+..+++.|||.++++..
T Consensus       265 ~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~---~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          265 P-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL---SGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             T-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE---ESSCCEEEEEECTTSCEEEEEC
T ss_pred             C-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec---ccCCCeeEEEECCCCcEEEEEe
Confidence            1 2234567777 4677666655667788877654331      12222   1236789999999998766653

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.81  E-value=2.1e-05  Score=68.99  Aligned_cols=231  Identities=10%  Similarity=0.004  Sum_probs=142.5

Q ss_pred             CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeee---------eeeeceEEEEEeccCCeEEEeccCCCCCceE
Q 023822           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN---------SKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~  104 (276)
                      ...|.++...++|. |-.|+.++-|..++..+........         .....|.++...+++. +.+++.   ++-|.
T Consensus       312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~---~~Gl~  386 (781)
T 3v9f_A          312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTD---GGGIN  386 (781)
T ss_dssp             SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEB---SSCEE
T ss_pred             CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeC---CCcEE
Confidence            45789999988876 5556666678888876543222110         1234588888876665 445554   56688


Q ss_pred             EEEccCCceeeee---cccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE----eecCCCeeEecCCCcEEE
Q 023822          105 LLSLHDNKYLRYF---KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL----RVQGRPAAAYDDQGLVFA  177 (276)
Q Consensus       105 ~~d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~l~  177 (276)
                      .|+..+++.....   ......|.++...+++++ ..|+.++-|..+|.++++.....    ....+.++...+++.+.+
T Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi  465 (781)
T 3v9f_A          387 VFENGKRVAIYNKENRELLSNSVLCSLKDSEGNL-WFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI  465 (781)
T ss_dssp             EEETTEEEEECC-----CCCSBEEEEEECTTSCE-EEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE
T ss_pred             EEECCCCeEEEccCCCCCCCcceEEEEECCCCCE-EEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE
Confidence            8987654332211   123457889888877764 44676677999998776543322    123455777788888777


Q ss_pred             EeeCCeEEEEecccCCCCCeeeee-ecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecC-CCCCCceE
Q 023822          178 VAFGGYIRMFDARKYEKGPFDIFS-VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK-PVSRNSTL  255 (276)
Q Consensus       178 ~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~v~  255 (276)
                      ++. +.+..||..+.+........ .......|.++...++|++.+ |+.++-+..||..+++.. .+... ......|.
T Consensus       466 gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~  542 (781)
T 3v9f_A          466 GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVR-KFNQYEGFCSNTIN  542 (781)
T ss_dssp             EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEE-EECTTTTCSCSCEE
T ss_pred             EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEE-EccCCCCCCCCeeE
Confidence            766 67899998764432111000 001135688999999988555 555344788997665543 33311 11345789


Q ss_pred             EEEECCCCcEEEEecCCCC
Q 023822          256 EASFSPEGMFVISGRVSPF  274 (276)
Q Consensus       256 ~~~~s~~g~~l~~~~~dg~  274 (276)
                      ++...++|.+.++.. +|.
T Consensus       543 ~i~~d~~g~lWi~T~-~Gl  560 (781)
T 3v9f_A          543 QIYRSSKGQMWLATG-EGL  560 (781)
T ss_dssp             EEEECTTSCEEEEET-TEE
T ss_pred             EEEECCCCCEEEEEC-CCc
Confidence            999999998665543 553

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.80  E-value=2.4e-05  Score=68.14  Aligned_cols=207  Identities=8%  Similarity=0.010  Sum_probs=126.6

Q ss_pred             CCcEEEEEEcCCCCEE-EEeecCCeEEEEEccCC----eeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEc
Q 023822           34 NGRISSMDFHKSSSYL-VTASDDESIRLYDVTAA----TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL  108 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~  108 (276)
                      ...+..|+|.+.+..| ++-...+.|+.+++...    .....+.........|++.+.+..|+.+...  .+.|.+.++
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~--~~~I~v~~l  500 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV--LGTVSVADT  500 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETT--TTEEEEEET
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecC--CCeEEEEeC
Confidence            4567789999854444 45556678888888642    2222233233456789999888888777653  789999998


Q ss_pred             cCCceeeeecccCcceEEEEeccCCCEEEEeeC--CCeEEEEeccCceeeeeEe--ecCCCeeEecCCCcEEEEee--CC
Q 023822          109 HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL--DRTVLLWDQRAEKCQGLLR--VQGRPAAAYDDQGLVFAVAF--GG  182 (276)
Q Consensus       109 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~--d~  182 (276)
                      ........+...-.....|++.|.+..|+.+..  .+.|...++........+.  ......+++++.+..|..+.  .+
T Consensus       501 dG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~  580 (791)
T 3m0c_C          501 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH  580 (791)
T ss_dssp             TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             CCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCC
Confidence            765443333334455789999997665555543  3689888887654433332  23456799997655444444  58


Q ss_pred             eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEee
Q 023822          183 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  245 (276)
Q Consensus       183 ~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  245 (276)
                      .|..+++.....  ..+............|++.. ++++++-...+.|...|..+|+.+..+.
T Consensus       581 ~I~~~d~dG~~~--~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~~l~  640 (791)
T 3m0c_C          581 SISSIDVNGGNR--KTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLLA  640 (791)
T ss_dssp             EEEEEETTSCSC--EEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             cEEEEecCCCce--EEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcceEEee
Confidence            899999865332  11222112222345666633 3444444456788889887887666654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.79  E-value=9.9e-07  Score=74.33  Aligned_cols=147  Identities=9%  Similarity=-0.005  Sum_probs=90.1

Q ss_pred             CCEEEEeecCCeEEEEEccCCeeeeeeeeeee----ceEE-EEEeccCCeEEEeccC---CCCCceEEEEccCCceeeee
Q 023822           46 SSYLVTASDDESIRLYDVTAATCLKTINSKKY----GVDL-VCFTSHPTTVIYSSKN---GWDESLRLLSLHDNKYLRYF  117 (276)
Q Consensus        46 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----~v~~-~~~~~~~~~l~~~~~~---~~d~~i~~~d~~~~~~~~~~  117 (276)
                      +..++.++.|+.+..+|..+|+.+-.......    .+.. ...  .+..++++...   +.++.|..+|..+++.+..+
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  192 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA  192 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence            45677888899999999999998776543220    1211 111  23455555431   11589999999999988766


Q ss_pred             cccCcc--------------------------------------eEEEEeccCCCEEEEeeCC----------------C
Q 023822          118 KGHHDR--------------------------------------VVSLSLCSSKDCFISGSLD----------------R  143 (276)
Q Consensus       118 ~~~~~~--------------------------------------i~~~~~~~~~~~l~~~~~d----------------~  143 (276)
                      ......                                      ...+++.++...++.+..+                +
T Consensus       193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~  272 (571)
T 2ad6_A          193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM  272 (571)
T ss_dssp             ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred             ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence            432111                                      0134566666666665532                3


Q ss_pred             eEEEEeccCceeeeeEeecC--------CCe-eEe--cCCCc---EEEEee-CCeEEEEecccCCC
Q 023822          144 TVLLWDQRAEKCQGLLRVQG--------RPA-AAY--DDQGL---VFAVAF-GGYIRMFDARKYEK  194 (276)
Q Consensus       144 ~i~iwd~~~~~~~~~~~~~~--------~~~-~~~--~~~~~---~l~~~~-d~~i~~~d~~~~~~  194 (276)
                      .|..+|.++++.+-.++...        ... +..  ..+++   +++.+. +|.++++|.++++.
T Consensus       273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  338 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNL  338 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCE
T ss_pred             EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCE
Confidence            69999999998776663221        111 112  23563   455555 89999999988653

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.76  E-value=1.8e-05  Score=61.47  Aligned_cols=197  Identities=13%  Similarity=0.163  Sum_probs=120.4

Q ss_pred             CCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEecc----CCe--EEEeccCCC--CCceEEEEcc-CCceee
Q 023822           45 SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH----PTT--VIYSSKNGW--DESLRLLSLH-DNKYLR  115 (276)
Q Consensus        45 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~--l~~~~~~~~--d~~i~~~d~~-~~~~~~  115 (276)
                      ...+++.....+-+.+||+ +|+.++.+..  +.++.+..-|.    ++.  ++.++. ..  +++|.+|++. ....+.
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~-R~~~~n~l~vf~iDp~~~~l~  114 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASN-RSEGKNTIEIYAIDGKNGTLQ  114 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEE-CSTTCCEEEEEEECTTTCCEE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeC-CCCCCCeEEEEEECCCCCcee
Confidence            3445666667788999999 8888888754  34555555552    222  444443 22  4789999773 222344


Q ss_pred             eecc------cC-cceEEEEe--ccC-CC-EEEEeeCCCeEEEEecc-------CceeeeeEee-cCCCeeEecCCCcEE
Q 023822          116 YFKG------HH-DRVVSLSL--CSS-KD-CFISGSLDRTVLLWDQR-------AEKCQGLLRV-QGRPAAAYDDQGLVF  176 (276)
Q Consensus       116 ~~~~------~~-~~i~~~~~--~~~-~~-~l~~~~~d~~i~iwd~~-------~~~~~~~~~~-~~~~~~~~~~~~~~l  176 (276)
                      .+..      .. ..+..+++  +|. +. ++++...+|.+..|++.       +.+.++.+.. ..+..+...+....|
T Consensus       115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~L  194 (355)
T 3amr_A          115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRL  194 (355)
T ss_dssp             ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEE
T ss_pred             eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeE
Confidence            4421      11 45666777  664 43 67788889999999983       3355566633 334567777766666


Q ss_pred             EEee-CCeEEEEecccCCCC-Ceeeeee--cCCCCCceEEEE--CCCCc-EEEEee-cCCcEEEEECC-CCcEEEEee
Q 023822          177 AVAF-GGYIRMFDARKYEKG-PFDIFSV--GGDISDANVVKF--SNDGR-LMLLTT-MEGHIHVLDSF-RGTLLSTYN  245 (276)
Q Consensus       177 ~~~~-d~~i~~~d~~~~~~~-~~~~~~~--~~~~~~i~~~~~--~~~~~-~l~~~~-~dg~i~i~d~~-~~~~~~~~~  245 (276)
                      ..+. +..|..|+.+..... ...+...  ..-...+..|++  .++++ ||++++ .++...+||.. +.+.+..|.
T Consensus       195 yv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             EEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             EEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence            6666 655666664432211 1112222  222236777887  45555 676666 56799999996 677887775

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.76  E-value=3.8e-05  Score=61.76  Aligned_cols=203  Identities=13%  Similarity=0.029  Sum_probs=124.5

Q ss_pred             EEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCC----ceeeeecccCcc
Q 023822           48 YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN----KYLRYFKGHHDR  123 (276)
Q Consensus        48 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~----~~~~~~~~~~~~  123 (276)
                      +|+.+ ....|+..++........+. ....+..++|.+.+..|+.+...  .+.|+.+++...    .....+......
T Consensus        85 ~ll~~-~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~--~~~I~~~~~~g~~~~~~~~~~~~~~~~~  160 (400)
T 3p5b_L           85 YLFFT-NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLS--QRMICSTQLDRAHGVSSYDTVISRDIQA  160 (400)
T ss_dssp             EEEEE-ETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETT--TTEEEEEEC------CCCEEEECSSCSC
T ss_pred             eeEEe-ccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecC--CCeEEEEEcccCCCCCcceEEEeCCCCC
Confidence            44444 34689999987655443333 34467899999988888777653  688998988652    222333323445


Q ss_pred             eEEEEeccC-CCEEEEeeCCCeEEEEeccCceeeeeEe--ecCCCeeEecCCCcEEEEee---CCeEEEEecccCCCCCe
Q 023822          124 VVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLR--VQGRPAAAYDDQGLVFAVAF---GGYIRMFDARKYEKGPF  197 (276)
Q Consensus       124 i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~---d~~i~~~d~~~~~~~~~  197 (276)
                      ...+++.+. ++++++-...+.|.+.+++.......+.  ......++++|.+..|..+.   .+.|...++.....   
T Consensus       161 p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~---  237 (400)
T 3p5b_L          161 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---  237 (400)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC---
T ss_pred             cccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc---
Confidence            678999874 5555555667899999988665443332  23356889998654444443   37888888865332   


Q ss_pred             eeeeecCCCCCceEEEECCCCcEEEEee-cCCcEEEEECCCCcEEEEeecCCCCCCceEEEEE
Q 023822          198 DIFSVGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF  259 (276)
Q Consensus       198 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~  259 (276)
                       ...........+.++++|++..|+.+. ..+.|..+|+..... ..+............+++
T Consensus       238 -~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v  298 (400)
T 3p5b_L          238 -YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAV  298 (400)
T ss_dssp             -EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-EEEEECSSTTSSEEEEEE
T ss_pred             -EEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-EEEEeCCCCCCCCEEEEE
Confidence             122223335678999998777776664 457899999754433 333211112234556666

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.76  E-value=2.6e-07  Score=79.71  Aligned_cols=206  Identities=8%  Similarity=0.040  Sum_probs=123.1

Q ss_pred             CcEEEEEEcCCCCEEEEe-ecCCeEEEEEccC----CeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEcc
Q 023822           35 GRISSMDFHKSSSYLVTA-SDDESIRLYDVTA----ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH  109 (276)
Q Consensus        35 ~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~  109 (276)
                      ..+..++|.+.+..|+.+ ...+.|+.+++..    ......+.........+++.+.+..|+++...  .+.|.++++.
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~--~~~I~v~d~d  483 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV--LGTVSVADTK  483 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTT--TSCEEEEBSS
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEecc--CCeEEEEecC
Confidence            345688999876666655 3567899998875    22222222222245678887666666666432  7889999987


Q ss_pred             CCceeeeecccCcceEEEEeccCCCEEEEeeC-C-CeEEEEeccCceeeeeE--eecCCCeeEecCCCc-EEEEee-CCe
Q 023822          110 DNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-D-RTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGL-VFAVAF-GGY  183 (276)
Q Consensus       110 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~-~l~~~~-d~~  183 (276)
                      .......+.........+++.|.+.+|+.+.. . +.|..+++........+  .......++++|++. ++++-. .+.
T Consensus       484 g~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~  563 (699)
T 1n7d_A          484 GVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  563 (699)
T ss_dssp             SCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTE
T ss_pred             CCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCe
Confidence            65443333322345678899986655554443 2 67888877643322111  233456899998754 444443 689


Q ss_pred             EEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEee
Q 023822          184 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  245 (276)
Q Consensus       184 i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  245 (276)
                      |..+++.....  ..+............+++..+ .++++....+.|..++..+++.+..+.
T Consensus       564 I~~~d~dG~~~--~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          564 ISSIDVNGGNR--KTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             EEEECSSSSCC--EEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             EEEEccCCCce--EEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence            99999875322  112211122233455666554 445555567899999988888877765

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.76  E-value=6.4e-06  Score=69.60  Aligned_cols=193  Identities=13%  Similarity=0.059  Sum_probs=119.9

Q ss_pred             CCEEEEeec-CCeEEEEEc-cCCeeeeeeeeeeec-----------eEEEEEeccCCe----EEEeccCCCCCceEEEEc
Q 023822           46 SSYLVTASD-DESIRLYDV-TAATCLKTINSKKYG-----------VDLVCFTSHPTT----VIYSSKNGWDESLRLLSL  108 (276)
Q Consensus        46 ~~~l~~~~~-d~~i~iwd~-~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~----l~~~~~~~~d~~i~~~d~  108 (276)
                      +..+++++. ++.|.-+|. .+|+.+-.+......           ...+++.|.+..    +++++.   ++.|.-+|.
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~---dg~l~AlDa  138 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL---DGNVAALNA  138 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT---TSEEEEEET
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC---CCEEEEEEC
Confidence            456666676 889999999 899988776543211           123455444444    777776   999999999


Q ss_pred             cCCceeeeecccCc----ceEE-EEeccCCCEEEEee------CCCeEEEEeccCceeeeeEeecCC-------------
Q 023822          109 HDNKYLRYFKGHHD----RVVS-LSLCSSKDCFISGS------LDRTVLLWDQRAEKCQGLLRVQGR-------------  164 (276)
Q Consensus       109 ~~~~~~~~~~~~~~----~i~~-~~~~~~~~~l~~~~------~d~~i~iwd~~~~~~~~~~~~~~~-------------  164 (276)
                      .+++.+........    .+.+ ..+. ++ .+++++      .++.|+-+|.++++.+-.+.....             
T Consensus       139 ~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~  216 (599)
T 1w6s_A          139 ETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIK  216 (599)
T ss_dssp             TTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTT
T ss_pred             CCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccc
Confidence            99998876543220    1111 1111 44 455554      379999999999987765532211             


Q ss_pred             ---------------------------CeeEecCCCcEEEEee-C----------------CeEEEEecccCCCCCeeee
Q 023822          165 ---------------------------PAAAYDDQGLVFAVAF-G----------------GYIRMFDARKYEKGPFDIF  200 (276)
Q Consensus       165 ---------------------------~~~~~~~~~~~l~~~~-d----------------~~i~~~d~~~~~~~~~~~~  200 (276)
                                                 ...++.+...++..+. +                +.|..+|.++++..  -.+
T Consensus       217 ~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~--W~~  294 (599)
T 1w6s_A          217 NPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAK--FGY  294 (599)
T ss_dssp             CGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEE--EEE
T ss_pred             cccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCcee--eEe
Confidence                                       0245556555555544 4                37899999887641  112


Q ss_pred             eecCCCC-------CceEEEEC-CCC---cEEEEeecCCcEEEEECCCCcEEEEee
Q 023822          201 SVGGDIS-------DANVVKFS-NDG---RLMLLTTMEGHIHVLDSFRGTLLSTYN  245 (276)
Q Consensus       201 ~~~~~~~-------~i~~~~~~-~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~  245 (276)
                      ....|..       ...-+... .+|   +.++.++.+|.++++|..+|+.+....
T Consensus       295 q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          295 QKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK  350 (599)
T ss_dssp             ESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence            2222211       11112222 467   567778999999999999999987765

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.74  E-value=1.6e-05  Score=69.74  Aligned_cols=229  Identities=13%  Similarity=0.126  Sum_probs=140.2

Q ss_pred             CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeee--------------eeeeceEEEEEeccCCeEEEeccCCC
Q 023822           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN--------------SKKYGVDLVCFTSHPTTVIYSSKNGW   99 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~l~~~~~~~~   99 (276)
                      ...|.++...++|. |..|+..+-|.++|..+++......              .....|.++...+++. +.+++.   
T Consensus       257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~---  331 (781)
T 3v9f_A          257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTW---  331 (781)
T ss_dssp             CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEB---
T ss_pred             CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEec---
Confidence            35688888888776 4445554558888887654322111              1234688888877765 455554   


Q ss_pred             CCceEEEEccCCceeeeec---------ccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE-----eecCCC
Q 023822          100 DESLRLLSLHDNKYLRYFK---------GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-----RVQGRP  165 (276)
Q Consensus       100 d~~i~~~d~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~~~~  165 (276)
                      ++-|..++..+........         -....|.++...++++ |..|+.++-|..||..+.......     ....+.
T Consensus       332 ~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~  410 (781)
T 3v9f_A          332 GGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVL  410 (781)
T ss_dssp             SSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEE
T ss_pred             CCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceE
Confidence            6778888876554322110         0235688998887776 455666667899998765433221     123355


Q ss_pred             eeEecCCCcEEEEeeCCeEEEEecccCCCCCeeeeee-cCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEe
Q 023822          166 AAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSV-GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY  244 (276)
Q Consensus       166 ~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  244 (276)
                      ++...+++.+.++..++.+..+|.++.+.   ..+.. ......|.++...++|.+.+ |+. +-|..||..+++.....
T Consensus       411 ~i~~d~~g~lWigt~~~Gl~~~~~~~~~~---~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~  485 (781)
T 3v9f_A          411 CSLKDSEGNLWFGTYLGNISYYNTRLKKF---QIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHY  485 (781)
T ss_dssp             EEEECTTSCEEEEETTEEEEEECSSSCEE---EECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEE
T ss_pred             EEEECCCCCEEEEeccCCEEEEcCCCCcE---EEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecc
Confidence            67777888888877677899998865331   11111 12345788899888887554 445 45889998776654332


Q ss_pred             ecC--CCCCCceEEEEECCCCcEEEEecCCC
Q 023822          245 NVK--PVSRNSTLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       245 ~~~--~~~~~~v~~~~~s~~g~~l~~~~~dg  273 (276)
                      ...  ......|.++...++|++.+....+|
T Consensus       486 ~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G  516 (781)
T 3v9f_A          486 DTSNSQLLENFVRSIAQDSEGRFWIGTFGGG  516 (781)
T ss_dssp             CTTTSSCSCSCEEEEEECTTCCEEEEESSSC
T ss_pred             cCcccccccceeEEEEEcCCCCEEEEEcCCC
Confidence            211  01246789999999988666554344

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.71  E-value=4.4e-05  Score=59.38  Aligned_cols=204  Identities=11%  Similarity=0.041  Sum_probs=121.1

Q ss_pred             EEEEeecCCeEEEEEccCCe-eeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCcee-eeecccCcceE
Q 023822           48 YLVTASDDESIRLYDVTAAT-CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL-RYFKGHHDRVV  125 (276)
Q Consensus        48 ~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~i~  125 (276)
                      +|+.+. ...|+..++.... ..............+.|.+.+..|+.+...  .+.|..+++...... ..+...-....
T Consensus         6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~--~~~I~r~~~~g~~~~~~~~~~~l~~p~   82 (318)
T 3sov_A            6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVS--EEAIKRTEFNKTESVQNVVVSGLLSPD   82 (318)
T ss_dssp             EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETT--TTEEEEEETTSSSCCCEEEEECCSCCC
T ss_pred             EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECC--CCcEEEEEccCCCceEEEEcCCCCCcc
Confidence            344433 4579999987653 122222223356789999987777777653  788999998766422 22222223456


Q ss_pred             EEEeccC-CCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCc-EEEEee--CCeEEEEecccCCCCCeee
Q 023822          126 SLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGL-VFAVAF--GGYIRMFDARKYEKGPFDI  199 (276)
Q Consensus       126 ~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~-~l~~~~--d~~i~~~d~~~~~~~~~~~  199 (276)
                      .+++.+. ++++++-...+.|.++++.........  .......++++|.+. ++.+..  .+.|..+++.....    .
T Consensus        83 glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~----~  158 (318)
T 3sov_A           83 GLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR----F  158 (318)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC----E
T ss_pred             EEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe----E
Confidence            7888874 445555556789999998764332222  223345789998654 444432  47888888764321    1


Q ss_pred             eeecCCCCCceEEEECCCCcEEEEee-cCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECC
Q 023822          200 FSVGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP  261 (276)
Q Consensus       200 ~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~  261 (276)
                      ..........+.++++|++..|+.+. ..+.|..+|+... ....+..  ........+++..
T Consensus       159 ~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~--~~~~~P~glav~~  218 (318)
T 3sov_A          159 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT-NRQAVVK--GSLPHPFALTLFE  218 (318)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEC--SCCSCEEEEEEET
T ss_pred             EEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC-ceEEEec--CCCCCceEEEEeC
Confidence            11222334578999999766666654 5678999997543 3333321  2334556666643

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.63  E-value=6.5e-05  Score=61.58  Aligned_cols=232  Identities=10%  Similarity=0.130  Sum_probs=132.6

Q ss_pred             cEEEEEEcC-CCCEEEEee-cCCeEEEEEccCCeeeeeeeee---eeceEEEEE-------eccCCeEEEeccCCC----
Q 023822           36 RISSMDFHK-SSSYLVTAS-DDESIRLYDVTAATCLKTINSK---KYGVDLVCF-------TSHPTTVIYSSKNGW----   99 (276)
Q Consensus        36 ~v~~~~~~~-~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~~l~~~~~~~~----   99 (276)
                      ....|+|.| +...|+.+. ..+.|++.|++++.........   ......++|       .+++++++++...+.    
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            356899998 344455444 3467899998877765544322   235789999       999997877765210    


Q ss_pred             CCceEEEEccC-Ccee-----eeecccCcceEEEEeccC-CCEEEEeeCCCeEEEEecc-------Ccee----------
Q 023822          100 DESLRLLSLHD-NKYL-----RYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQR-------AEKC----------  155 (276)
Q Consensus       100 d~~i~~~d~~~-~~~~-----~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~-------~~~~----------  155 (276)
                      ...|.+++... +...     ..+... .....++++|+ +.++++-..++.|..+|+.       ++..          
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence            11366665433 2221     222211 23457788995 4556666678889999997       4443          


Q ss_pred             -eee-Eee---cCCCeeEecCCCcEEEEee--CCeEEEEecccCCCC---Ceeeeee---cC---------CCCCce-EE
Q 023822          156 -QGL-LRV---QGRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEKG---PFDIFSV---GG---------DISDAN-VV  212 (276)
Q Consensus       156 -~~~-~~~---~~~~~~~~~~~~~~l~~~~--d~~i~~~d~~~~~~~---~~~~~~~---~~---------~~~~i~-~~  212 (276)
                       ... +..   .....++++|++..|..+.  .+.|+.++.......   +..+.-.   .+         .-.... .+
T Consensus       299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv  378 (496)
T 3kya_A          299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV  378 (496)
T ss_dssp             TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred             ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence             112 211   2245799999998544444  688999775432110   0111111   00         111234 45


Q ss_pred             EEC-------CCCcEEEEeecCCcEEEEECCCCcEEEEeecCC-----------C----------CCCceEEEEECCC-C
Q 023822          213 KFS-------NDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP-----------V----------SRNSTLEASFSPE-G  263 (276)
Q Consensus       213 ~~~-------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----------~----------~~~~v~~~~~s~~-g  263 (276)
                      +..       ++|.++++=....+|+.++ .+|.. .++....           +          .-.....|+++++ |
T Consensus       379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g  456 (496)
T 3kya_A          379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKE  456 (496)
T ss_dssp             EEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTT
T ss_pred             EEccccccccCCCeEEEEECCCCEEEEEe-CCCCE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCC
Confidence            554       4667666666778999999 56644 3443210           0          1134678999997 6


Q ss_pred             cEEEEec
Q 023822          264 MFVISGR  270 (276)
Q Consensus       264 ~~l~~~~  270 (276)
                      .++++=.
T Consensus       457 ~lyVaD~  463 (496)
T 3kya_A          457 MFYVHDQ  463 (496)
T ss_dssp             EEEEEET
T ss_pred             EEEEEeC
Confidence            6555433

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.62  E-value=1.5e-05  Score=67.23  Aligned_cols=148  Identities=12%  Similarity=0.044  Sum_probs=90.0

Q ss_pred             CCEEEEeecCCeEEEEEccCCeeeeeeeeeee----ceE-EEEEecc---CC-eEEEeccC---CCCCceEEEEccCCce
Q 023822           46 SSYLVTASDDESIRLYDVTAATCLKTINSKKY----GVD-LVCFTSH---PT-TVIYSSKN---GWDESLRLLSLHDNKY  113 (276)
Q Consensus        46 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----~v~-~~~~~~~---~~-~l~~~~~~---~~d~~i~~~d~~~~~~  113 (276)
                      +..++.++.|+.|.-+|.++|+.+-.......    .+. ......+   ++ .++++...   +.++.|.-+|..+++.
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~  196 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE  196 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence            45677888899999999999998866653321    111 1111111   23 55554421   1278999999999988


Q ss_pred             eeeecccCcc-----------------------------------------eEEEEeccCCCEEEEeeC-----------
Q 023822          114 LRYFKGHHDR-----------------------------------------VVSLSLCSSKDCFISGSL-----------  141 (276)
Q Consensus       114 ~~~~~~~~~~-----------------------------------------i~~~~~~~~~~~l~~~~~-----------  141 (276)
                      +.........                                         -..+++.|+..+++.+..           
T Consensus       197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~  276 (582)
T 1flg_A          197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART  276 (582)
T ss_dssp             EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred             EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence            7755321100                                         012455666666666552           


Q ss_pred             ---------C----CeEEEEeccCceeeeeEeecC--------CC-eeEec---CCC---cEEEEee-CCeEEEEecccC
Q 023822          142 ---------D----RTVLLWDQRAEKCQGLLRVQG--------RP-AAAYD---DQG---LVFAVAF-GGYIRMFDARKY  192 (276)
Q Consensus       142 ---------d----~~i~iwd~~~~~~~~~~~~~~--------~~-~~~~~---~~~---~~l~~~~-d~~i~~~d~~~~  192 (276)
                               |    +.|..+|.++++.+-.++...        .. .+...   .++   .+++.+. +|.++++|.+++
T Consensus       277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG  356 (582)
T 1flg_A          277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNG  356 (582)
T ss_dssp             CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTC
T ss_pred             cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCC
Confidence                     2    589999999998876663321        11 12222   356   3555555 899999998876


Q ss_pred             C
Q 023822          193 E  193 (276)
Q Consensus       193 ~  193 (276)
                      +
T Consensus       357 ~  357 (582)
T 1flg_A          357 K  357 (582)
T ss_dssp             C
T ss_pred             C
Confidence            5

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.62  E-value=0.00012  Score=62.41  Aligned_cols=203  Identities=8%  Similarity=0.001  Sum_probs=128.6

Q ss_pred             CcEEEEEEcCCCCEEE-EeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCce
Q 023822           35 GRISSMDFHKSSSYLV-TASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY  113 (276)
Q Consensus        35 ~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~  113 (276)
                      ..+..++|++.+..|+ +-..++.|+.+++........+.........+++.+.+..|+.+...  .+.|.+.++.....
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~--~~~I~v~~~dG~~~  114 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTG--TNRIEVSKLDGQHR  114 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETT--TTEEEEEETTSTTC
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECC--CCEEEEEecCCCcE
Confidence            4577999999665555 44567899999987544333333222457789998887877777652  78899999875543


Q ss_pred             eeeecccCcceEEEEeccCCCEEEEeeC--CCeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee--CCeEEEEe
Q 023822          114 LRYFKGHHDRVVSLSLCSSKDCFISGSL--DRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF--GGYIRMFD  188 (276)
Q Consensus       114 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~--d~~i~~~d  188 (276)
                      ...+...-.....+++.|....|+....  .+.|...++......... .......+++++++..|..+.  .+.|..+|
T Consensus       115 ~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d  194 (628)
T 4a0p_A          115 QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSN  194 (628)
T ss_dssp             EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEc
Confidence            2223233445689999986555555442  567888887755433322 233455799999765555444  68999999


Q ss_pred             cccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEee
Q 023822          189 ARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  245 (276)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  245 (276)
                      +.....   ....  ........+++.. +.++++-...+.|...|..+++....+.
T Consensus       195 ~dG~~~---~v~~--~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~  245 (628)
T 4a0p_A          195 MLGLNR---EVIA--DDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQ  245 (628)
T ss_dssp             TTSCSC---EEEE--ECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CCCCce---EEee--ccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEEe
Confidence            876433   1221  2223456777765 4444444457889999987776555443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.59  E-value=0.00012  Score=57.87  Aligned_cols=235  Identities=11%  Similarity=0.059  Sum_probs=131.0

Q ss_pred             CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCe-eeeeee---eeeeceEEEEEecc---CCeEEEeccC-CCC----C
Q 023822           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT-CLKTIN---SKKYGVDLVCFTSH---PTTVIYSSKN-GWD----E  101 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~~-~~d----~  101 (276)
                      -.....++|.|+|++++ +..+|.|++++ .+++ .+..+.   ........++++|+   +..|.++... ..+    .
T Consensus        28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             CSCEEEEEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            34567999999998555 45669999997 4554 222211   12345789999998   6666655430 002    5


Q ss_pred             ceEEEEccCC--c-----ee-eeecc-cCcceEEEEeccCCCEEEEeeC-------------CCeEEEEeccCc------
Q 023822          102 SLRLLSLHDN--K-----YL-RYFKG-HHDRVVSLSLCSSKDCFISGSL-------------DRTVLLWDQRAE------  153 (276)
Q Consensus       102 ~i~~~d~~~~--~-----~~-~~~~~-~~~~i~~~~~~~~~~~l~~~~~-------------d~~i~iwd~~~~------  153 (276)
                      .|..|+....  .     .+ ..+.. .......|+|.|+|.++++.+.             .|+|..++....      
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np  185 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP  185 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence            6777776544  1     11 11221 1112467999999987666432             256666665432      


Q ss_pred             ---eeeeeEeecCCCeeEecC-CCcEEEEeeC----CeEEEEecccC--------CC--C--CeeeeeecCCCCCceEEE
Q 023822          154 ---KCQGLLRVQGRPAAAYDD-QGLVFAVAFG----GYIRMFDARKY--------EK--G--PFDIFSVGGDISDANVVK  213 (276)
Q Consensus       154 ---~~~~~~~~~~~~~~~~~~-~~~~l~~~~d----~~i~~~d~~~~--------~~--~--~~~~~~~~~~~~~i~~~~  213 (276)
                         ..+..........++|+| ++.++++-..    ..|.+......        ..  .  .............+..++
T Consensus       186 f~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~  265 (354)
T 3a9g_A          186 FPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGAS  265 (354)
T ss_dssp             STTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEE
T ss_pred             CCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceE
Confidence               011111223355899999 6777776652    23444322110        00  0  001112211223567788


Q ss_pred             EC-------CCCcEEEEeecCCcEEEEECCCC-cEEEEeecCCCCCCceEEEEECCCCcEEEEec
Q 023822          214 FS-------NDGRLMLLTTMEGHIHVLDSFRG-TLLSTYNVKPVSRNSTLEASFSPEGMFVISGR  270 (276)
Q Consensus       214 ~~-------~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  270 (276)
                      |.       .+|.++++.-..+.|...++... +..............+..+++.|||.++++..
T Consensus       266 ~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          266 FVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             ECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             EECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            84       56777776666778888888753 33211111112346789999999998766654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.59  E-value=4.9e-05  Score=59.72  Aligned_cols=194  Identities=9%  Similarity=0.127  Sum_probs=113.7

Q ss_pred             cEEEEEEcCCCCEEEEee------------cCCeEEEEEccCC-eeeeeee--e-----eeeceEEEEEec--cCC-eEE
Q 023822           36 RISSMDFHKSSSYLVTAS------------DDESIRLYDVTAA-TCLKTIN--S-----KKYGVDLVCFTS--HPT-TVI   92 (276)
Q Consensus        36 ~v~~~~~~~~~~~l~~~~------------~d~~i~iwd~~~~-~~~~~~~--~-----~~~~v~~~~~~~--~~~-~l~   92 (276)
                      ..-.++..|+|..+++++            .+|.|.++|.++. .....+.  +     .......+.+.+  ++. +|+
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            445677788775555542            6899999998732 1122222  1     123567777766  343 465


Q ss_pred             EeccCCCCCceEEEEccCCce----eeeeccc-CcceEEEEeccCCCEEEEee-----------------CCCeEEEEec
Q 023822           93 YSSKNGWDESLRLLSLHDNKY----LRYFKGH-HDRVVSLSLCSSKDCFISGS-----------------LDRTVLLWDQ  150 (276)
Q Consensus        93 ~~~~~~~d~~i~~~d~~~~~~----~~~~~~~-~~~i~~~~~~~~~~~l~~~~-----------------~d~~i~iwd~  150 (276)
                      ++.....+..|.+|++.....    +..+.+. -...+.+.+.++|.++++..                 ..|.|..+|.
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~  210 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  210 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence            554422257788888765422    2233322 23578999999998777654                 1245666665


Q ss_pred             cCceeeeeE-eecCCCeeEecCCCcEEEEee--CCeEEEEecccCC-CCCeeeeeecCCCCCceEEEECC-CCcEEEEee
Q 023822          151 RAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF--GGYIRMFDARKYE-KGPFDIFSVGGDISDANVVKFSN-DGRLMLLTT  225 (276)
Q Consensus       151 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~--d~~i~~~d~~~~~-~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~  225 (276)
                      .  +..... .....+.++|+|+++.+..+.  .+.|..|++.... ......+.   .......+++.+ +|++.+++.
T Consensus       211 ~--~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~---~~g~PDGi~vD~e~G~lwva~~  285 (355)
T 3sre_A          211 N--DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS---FDTLVDNISVDPVTGDLWVGCH  285 (355)
T ss_dssp             T--CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE---CSSEEEEEEECTTTCCEEEEEE
T ss_pred             C--eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe---CCCCCceEEEeCCCCcEEEEec
Confidence            3  222222 334566899999997776665  6899999986422 11111221   235567899999 598777665


Q ss_pred             cC-CcEEEEE
Q 023822          226 ME-GHIHVLD  234 (276)
Q Consensus       226 ~d-g~i~i~d  234 (276)
                      .+ +.|..|+
T Consensus       286 ~~g~~v~~~~  295 (355)
T 3sre_A          286 PNGMRIFFYD  295 (355)
T ss_dssp             SCHHHHHSCC
T ss_pred             CCceEEEEEC
Confidence            33 2344344

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.58  E-value=6.3e-06  Score=71.90  Aligned_cols=189  Identities=10%  Similarity=0.038  Sum_probs=106.8

Q ss_pred             ceEEEEEe-ccCCeEEEeccCCCC--CceEEEEccCC-ceee-eecccCcceEEEEeccCCCEEEEeeCC-----CeEEE
Q 023822           78 GVDLVCFT-SHPTTVIYSSKNGWD--ESLRLLSLHDN-KYLR-YFKGHHDRVVSLSLCSSKDCFISGSLD-----RTVLL  147 (276)
Q Consensus        78 ~v~~~~~~-~~~~~l~~~~~~~~d--~~i~~~d~~~~-~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~i  147 (276)
                      .+...+|+ ||+++++.+...+.+  ..|+++|+.++ +.+. .+.   .....+.|+||++.|+....+     ..|++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            57789999 999999877642111  35999999988 6322 121   123568899999877776655     36888


Q ss_pred             EeccCceee--eeEeec---CCCeeEecCCCcEEEEee----CCeEEEEecccCCCCC-eeeeeecCCCCCceEEEECCC
Q 023822          148 WDQRAEKCQ--GLLRVQ---GRPAAAYDDQGLVFAVAF----GGYIRMFDARKYEKGP-FDIFSVGGDISDANVVKFSND  217 (276)
Q Consensus       148 wd~~~~~~~--~~~~~~---~~~~~~~~~~~~~l~~~~----d~~i~~~d~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~  217 (276)
                      +++.+++..  ..+...   ....+.|+|++++|+...    ...|+++|+.+..... .... .........++.|+.+
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l-~~~~~~~~~s~~~~~g  330 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIV-RPREKGVRYDVQMHGT  330 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEES-SCCCTTCCEEEEEETT
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEe-ecCCCCceEEEeeeeC
Confidence            888776432  222211   123578999998777655    3578888987653222 0111 1222334455555444


Q ss_pred             CcEEEEeecC----CcEEEEECCCC-cEEE-EeecCCCCCCceEEEEECCCCcEEEEecCCC
Q 023822          218 GRLMLLTTME----GHIHVLDSFRG-TLLS-TYNVKPVSRNSTLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       218 ~~~l~~~~~d----g~i~i~d~~~~-~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  273 (276)
                      +.+++....+    ..|..+++.++ +... .+. + .....+..+.+. .+.++++...+|
T Consensus       331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~-~-~~~~~l~~~~~~-~~~lv~~~~~~g  389 (751)
T 2xe4_A          331 SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVD-H-SEDVFMESIAVR-SNYLVVAGRRAG  389 (751)
T ss_dssp             TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEEC-C-CSSEEEEEEEEC-SSEEEEEEEETT
T ss_pred             CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEEC-C-CCCcEEEEEEEE-CCEEEEEEEeCC
Confidence            4444444443    35777777653 2222 222 1 112245555554 234444444444

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.57  E-value=9.3e-05  Score=57.19  Aligned_cols=186  Identities=11%  Similarity=0.094  Sum_probs=107.4

Q ss_pred             CcEEEEEEcCCCCEEEEeecC--CeEEEEEccCCeeeeeeeee-eeceEEEEEeccCCeEEEeccCCCCCceEEEEccCC
Q 023822           35 GRISSMDFHKSSSYLVTASDD--ESIRLYDVTAATCLKTINSK-KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN  111 (276)
Q Consensus        35 ~~v~~~~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~  111 (276)
                      .....+++.++++++++....  ..|..++..+++........ ......++..+++..+++-..   ++.|+.+|..++
T Consensus        72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~---~g~i~~~d~~~~  148 (306)
T 2p4o_A           72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSY---RGAIWLIDVVQP  148 (306)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETT---TTEEEEEETTTT
T ss_pred             CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECC---CCeEEEEeCCCC
Confidence            467889999999866655432  24667777777654322211 112234444444433333333   788888887654


Q ss_pred             ce-eeee---------cccCcceEEEEeccCCCEEE-EeeCCCeEEEEeccC-cee--eeeE-eecCCCeeEecCCCcEE
Q 023822          112 KY-LRYF---------KGHHDRVVSLSLCSSKDCFI-SGSLDRTVLLWDQRA-EKC--QGLL-RVQGRPAAAYDDQGLVF  176 (276)
Q Consensus       112 ~~-~~~~---------~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~iwd~~~-~~~--~~~~-~~~~~~~~~~~~~~~~l  176 (276)
                      +. +...         ...-.....+  +++++.|+ +-...+.|..+|+.. ++.  ...+ .......++++++|+++
T Consensus       149 ~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~  226 (306)
T 2p4o_A          149 SGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLY  226 (306)
T ss_dssp             EEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEE
T ss_pred             cEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEE
Confidence            21 1100         0111233455  77877554 445578999999875 321  1122 22346689999999887


Q ss_pred             EEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEEC---CCCcEEEEeecCC
Q 023822          177 AVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFS---NDGRLMLLTTMEG  228 (276)
Q Consensus       177 ~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~l~~~~~dg  228 (276)
                      ++.. .+.|.++|... +.  ..+.........+++++|.   |+++.|++++..+
T Consensus       227 va~~~~~~V~~~~~~G-~~--~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          227 GATHIYNSVVRIAPDR-ST--TIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             EECBTTCCEEEECTTC-CE--EEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             EEeCCCCeEEEECCCC-CE--EEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence            7776 68999999752 21  1111222223467899998   8887777666543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=98.55  E-value=0.0001  Score=58.22  Aligned_cols=233  Identities=12%  Similarity=0.108  Sum_probs=124.9

Q ss_pred             CcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeee-------eeeeceEEEEEecc---CCeEEEeccC-CC----
Q 023822           35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN-------SKKYGVDLVCFTSH---PTTVIYSSKN-GW----   99 (276)
Q Consensus        35 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~~~~---~~~l~~~~~~-~~----   99 (276)
                      .....|+|.|+|+.|+.+...|.|++++.. ++....+.       ........++++|+   +..|.++... ..    
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            346789999999834445567999999853 43221111       12345688999996   5555555321 00    


Q ss_pred             CCceEEEEccCC--c--eeee-ecc------cCcceEEEEeccCCCEEEEeeC-------------CCeEEEEeccCce-
Q 023822          100 DESLRLLSLHDN--K--YLRY-FKG------HHDRVVSLSLCSSKDCFISGSL-------------DRTVLLWDQRAEK-  154 (276)
Q Consensus       100 d~~i~~~d~~~~--~--~~~~-~~~------~~~~i~~~~~~~~~~~l~~~~~-------------d~~i~iwd~~~~~-  154 (276)
                      ...|..+++...  +  ..+. +..      .......|+|.|+|.++++.+.             .|+|.-+|....- 
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p  176 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP  176 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence            124666665432  1  1111 111      0112357999999976555433             2467777765321 


Q ss_pred             -----------eeeeE--eecCCCeeEecC-CCcEEEEeeC--CeEEEEecccCCCC-----------------------
Q 023822          155 -----------CQGLL--RVQGRPAAAYDD-QGLVFAVAFG--GYIRMFDARKYEKG-----------------------  195 (276)
Q Consensus       155 -----------~~~~~--~~~~~~~~~~~~-~~~~l~~~~d--~~i~~~d~~~~~~~-----------------------  195 (276)
                                 ....+  .......++|+| +++++++-..  +.=.+.-+..+..-                       
T Consensus       177 ~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~  256 (353)
T 2g8s_A          177 DDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEI  256 (353)
T ss_dssp             TTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSS
T ss_pred             CCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCC
Confidence                       11112  112244789999 6777776552  11122222111100                       


Q ss_pred             ----CeeeeeecCCCCCceEEEECC-------CCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCc
Q 023822          196 ----PFDIFSVGGDISDANVVKFSN-------DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM  264 (276)
Q Consensus       196 ----~~~~~~~~~~~~~i~~~~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  264 (276)
                          ........ +...+..++|..       +|+++++.-..+.|...++..++..............+..+++.|||.
T Consensus       257 ~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~  335 (353)
T 2g8s_A          257 VAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGY  335 (353)
T ss_dssp             CTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSC
T ss_pred             CCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCc
Confidence                00011111 123456677763       467777666778888888876654433221112235789999999998


Q ss_pred             EEEEe
Q 023822          265 FVISG  269 (276)
Q Consensus       265 ~l~~~  269 (276)
                      ++++.
T Consensus       336 lyv~t  340 (353)
T 2g8s_A          336 LYVLT  340 (353)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            76653

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.52  E-value=0.00017  Score=62.89  Aligned_cols=204  Identities=12%  Similarity=0.054  Sum_probs=121.3

Q ss_pred             EEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCC----ceeeeecccCcc
Q 023822           48 YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN----KYLRYFKGHHDR  123 (276)
Q Consensus        48 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~----~~~~~~~~~~~~  123 (276)
                      +|+.+. ...|+..++...+....+. ....+..++|.+....|+.+...  .+.|+.+++...    .....+......
T Consensus       397 ~Ll~an-~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~--~~~I~~~~l~g~~~~~~~~~vi~~~l~~  472 (791)
T 3m0c_C          397 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLS--QRMICSTQLDRAHGVSSYDTVISRDIQA  472 (791)
T ss_dssp             EEEEEC-BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETT--TTEEEEEEC--------CEEEECSSCSC
T ss_pred             cccccc-ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeecc--ceeEEEEeccCCCCCcceeEEEecCCCC
Confidence            444443 3568888887654433333 33467889999877777776652  678988888753    222333323445


Q ss_pred             eEEEEeccCCC-EEEEeeCCCeEEEEeccCceeeeeEe--ecCCCeeEecCCC-cEEEEee-C-CeEEEEecccCCCCCe
Q 023822          124 VVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLR--VQGRPAAAYDDQG-LVFAVAF-G-GYIRMFDARKYEKGPF  197 (276)
Q Consensus       124 i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~-~~l~~~~-d-~~i~~~d~~~~~~~~~  197 (276)
                      ...|++.+.++ ++++-...+.|.+.++........+.  ......++++|.+ .++.+-. . +.|.+.++.....   
T Consensus       473 P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~---  549 (791)
T 3m0c_C          473 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---  549 (791)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE---
T ss_pred             cceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce---
Confidence            67889987765 55555567899999988654433332  2335689999875 4444443 3 7788888865332   


Q ss_pred             eeeeecCCCCCceEEEECCCCcEEEEee-cCCcEEEEECCCCcEEEEeecCCCCCCceEEEEEC
Q 023822          198 DIFSVGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS  260 (276)
Q Consensus       198 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s  260 (276)
                       .............|++++.+..|+.+. ..+.|..+++........+... ..-....+|++.
T Consensus       550 -~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~-~~l~~P~glav~  611 (791)
T 3m0c_C          550 -YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE-KRLAHPFSLAVF  611 (791)
T ss_dssp             -EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECT-TTTSSEEEEEEE
T ss_pred             -EEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCC-CccCCCCEEEEe
Confidence             222223345788999998766666664 4568999997544433333311 112234456653

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.50  E-value=0.00018  Score=55.42  Aligned_cols=206  Identities=10%  Similarity=0.058  Sum_probs=124.1

Q ss_pred             cCCCcEEEEEEcCCCCEEEEee-cCCeEEEEEccCCeeeee-eee----e--eeceEEEEE---eccCCeEEEeccC---
Q 023822           32 DYNGRISSMDFHKSSSYLVTAS-DDESIRLYDVTAATCLKT-INS----K--KYGVDLVCF---TSHPTTVIYSSKN---   97 (276)
Q Consensus        32 ~h~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~-~~~----~--~~~v~~~~~---~~~~~~l~~~~~~---   97 (276)
                      ...---.+++|.+....|..++ ..++|..|+...+..... +..    .  ...+..+.|   .|+++.+++....   
T Consensus        10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af   89 (334)
T 2p9w_A           10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF   89 (334)
T ss_dssp             CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred             CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence            3333445789988666666665 789999999875543322 221    1  124578999   5786666643310   


Q ss_pred             -------CCCCceEEEEcc---CCceeeeec--cc-----------CcceEEEEeccCCCEEEEeeCC-CeEEEEeccCc
Q 023822           98 -------GWDESLRLLSLH---DNKYLRYFK--GH-----------HDRVVSLSLCSSKDCFISGSLD-RTVLLWDQRAE  153 (276)
Q Consensus        98 -------~~d~~i~~~d~~---~~~~~~~~~--~~-----------~~~i~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~  153 (276)
                             ..+..|..||+.   +++.+....  ..           ......++..++|+..++++.. +.|...+....
T Consensus        90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~  169 (334)
T 2p9w_A           90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK  169 (334)
T ss_dssp             CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC
T ss_pred             cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC
Confidence                   015779999998   777665432  11           1247899999999999988888 88888876654


Q ss_pred             eeeeeE-e------ecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecC--CCCCceEE-EECCCCcEEE
Q 023822          154 KCQGLL-R------VQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGG--DISDANVV-KFSNDGRLML  222 (276)
Q Consensus       154 ~~~~~~-~------~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~--~~~~i~~~-~~~~~~~~l~  222 (276)
                      ...... .      ......++++|++.+|++.. .+.+..+|++.....++.......  .......+ ..-.+|+.|+
T Consensus       170 ~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vll  249 (334)
T 2p9w_A          170 TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVL  249 (334)
T ss_dssp             CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEE
T ss_pred             EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEE
Confidence            322211 1      12245899999998777766 899999998842211111110011  11122333 3334777744


Q ss_pred             E-eecCCcEEEEECCC
Q 023822          223 L-TTMEGHIHVLDSFR  237 (276)
Q Consensus       223 ~-~~~dg~i~i~d~~~  237 (276)
                      + ....+.+.+.+...
T Consensus       250 V~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          250 VGARAPYAISFRSWDN  265 (334)
T ss_dssp             EEEETTEEEEEECSST
T ss_pred             EEcCCCCEEEEECCCC
Confidence            4 44566666666443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.49  E-value=0.00016  Score=61.58  Aligned_cols=205  Identities=11%  Similarity=0.057  Sum_probs=122.4

Q ss_pred             CCcEEEEEEcCCCCEEEEe-ecCCeEEEEEccCCee-eeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCC
Q 023822           34 NGRISSMDFHKSSSYLVTA-SDDESIRLYDVTAATC-LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN  111 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~  111 (276)
                      -.....++|++.+..|+.+ ...+.|..++++.... ...+...-.....+++.+.+..++.+...  .+.|.+.++...
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~--~~~I~v~~~dG~  116 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSE--TNRIEVSNLDGS  116 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETT--TTEEEEEETTSC
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCC--CCEEEEEECCCC
Confidence            3457789999866666544 4567888888865432 22233222467889999978877777653  789999998765


Q ss_pred             ceeeeecccCcceEEEEeccCCCEEEEeeC--CCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee--CCeEE
Q 023822          112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSL--DRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF--GGYIR  185 (276)
Q Consensus       112 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~--d~~i~  185 (276)
                      .....+...-.....|++.|.+..|+....  .+.|...++.........  .......+++++++..|..+.  .+.|.
T Consensus       117 ~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~  196 (619)
T 3s94_A          117 LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIH  196 (619)
T ss_dssp             SCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEE
T ss_pred             CEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEE
Confidence            433333233445678999997655555443  467777777644332222  233355799998655444444  68899


Q ss_pred             EEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEee
Q 023822          186 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  245 (276)
Q Consensus       186 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  245 (276)
                      .+|+.......+    ..........+++..+ ..+++-...+.|...|..+++....+.
T Consensus       197 ~~~~dG~~~~~~----~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i~  251 (619)
T 3s94_A          197 KSNLDGTNRQAV----VKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREIH  251 (619)
T ss_dssp             EESSSCCEEC-------------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEECC
T ss_pred             EecCCCCccEEE----EeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEEe
Confidence            999875332111    1111223456777765 444444567889999988877655443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.45  E-value=7.3e-06  Score=70.72  Aligned_cols=176  Identities=12%  Similarity=0.010  Sum_probs=107.6

Q ss_pred             CCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccC----CceeeeecccCcceEEEEec
Q 023822           55 DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD----NKYLRYFKGHHDRVVSLSLC  130 (276)
Q Consensus        55 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~----~~~~~~~~~~~~~i~~~~~~  130 (276)
                      .+.|+..++...+....+.. ...+..++|.+.+..|+.+...  .+.|+.+++..    ......+.........|++.
T Consensus       385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~--~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD  461 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLS--QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD  461 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTT--TTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECC
T ss_pred             ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecC--CCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEE
Confidence            35788888876655444333 2356789999988888887653  68899999875    22222222122234668887


Q ss_pred             cC-CCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee--C-CeEEEEecccCCCCCeeeeeecC
Q 023822          131 SS-KDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF--G-GYIRMFDARKYEKGPFDIFSVGG  204 (276)
Q Consensus       131 ~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~--d-~~i~~~d~~~~~~~~~~~~~~~~  204 (276)
                      +. ++++++-...+.|.++++........+  .......++++|.+..|..+.  . +.|.++++.....    ......
T Consensus       462 ~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~----~~l~~~  537 (699)
T 1n7d_A          462 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI----YSLVTE  537 (699)
T ss_dssp             CSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC----CEESCS
T ss_pred             eeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe----eEEEeC
Confidence            54 445555556788999998765443333  234466889998654444433  3 6788887764322    111112


Q ss_pred             CCCCceEEEECCCCcEEEEe-ecCCcEEEEECCC
Q 023822          205 DISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFR  237 (276)
Q Consensus       205 ~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~  237 (276)
                      .....+.|+|+|++..|+.+ +..+.|..+++..
T Consensus       538 ~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG  571 (699)
T 1n7d_A          538 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  571 (699)
T ss_dssp             SCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred             CCCCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence            23457789999976555554 4567899999864

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.44  E-value=5.2e-05  Score=61.62  Aligned_cols=151  Identities=13%  Similarity=0.185  Sum_probs=98.0

Q ss_pred             ceEEEEEec-cCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCC-C----eEEEEecc
Q 023822           78 GVDLVCFTS-HPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLD-R----TVLLWDQR  151 (276)
Q Consensus        78 ~v~~~~~~~-~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~----~i~iwd~~  151 (276)
                      ....++++| ++..|+++..   .+.|+.+|+..+...... ........++|++++++|+.+... +    .+..++..
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~---~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~  213 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGE---QHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE  213 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEB---TEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG
T ss_pred             CCCEEEECCCCCCeEEEEeC---CCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC
Confidence            356889998 5677777765   478999998876544333 344567899999999966655542 2    34444433


Q ss_pred             Cceee--eeE-eecCCCeeEecC-CCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEe-e
Q 023822          152 AEKCQ--GLL-RVQGRPAAAYDD-QGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLT-T  225 (276)
Q Consensus       152 ~~~~~--~~~-~~~~~~~~~~~~-~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~  225 (276)
                       +...  ..+ .......++++| ++.++++.. ++.|..++.......  ...... .......++|+|+|++|+.+ .
T Consensus       214 -g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~--~~~~~~-~~~~P~gia~~pdG~~lyv~d~  289 (430)
T 3tc9_A          214 -SGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT--PLFTIQ-DSGWEFHIQFHPSGNYAYIVVV  289 (430)
T ss_dssp             -GTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE--EEEECS-SSSCCEEEEECTTSSEEEEEET
T ss_pred             -CceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE--EEEEcC-CCCcceeEEEcCCCCEEEEEEC
Confidence             2221  222 344567899999 777776665 789999998753310  122222 22457889999999965555 4


Q ss_pred             cCCcEEEEECC
Q 023822          226 MEGHIHVLDSF  236 (276)
Q Consensus       226 ~dg~i~i~d~~  236 (276)
                      ..+.|..++..
T Consensus       290 ~~~~I~~~~~d  300 (430)
T 3tc9_A          290 NQHYILRSDYD  300 (430)
T ss_dssp             TTTEEEEEEEE
T ss_pred             CCCEEEEEeCC
Confidence            56789998754

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.39  E-value=0.00038  Score=54.33  Aligned_cols=223  Identities=10%  Similarity=0.029  Sum_probs=121.7

Q ss_pred             CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeee----eeeeceEEEEEeccCCeEEEeccCCCCCceEEEEcc
Q 023822           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN----SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH  109 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~  109 (276)
                      ...+.+|.|.+++..+++ +.+|.|. ...+.++.-....    .....+..+.+.+ + .+++++.   .+.|.. ...
T Consensus        35 ~~~~~~v~~~~~~~~~~~-G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~-~~~~~g~---~g~i~~-S~D  106 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLV-GVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N-EGWIVGE---PPIMLH-TTD  106 (327)
T ss_dssp             SSCEEEEEESSSSCEEEE-ETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-T-EEEEEEE---TTEEEE-ESS
T ss_pred             CCcEEEEEECCCCcEEEE-cCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-C-eEEEEEC---CCeEEE-ECC
Confidence            457999999877777774 4667653 3334343222221    1234678888875 3 3444444   554433 223


Q ss_pred             CCceeeeec---ccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE---eecCCCeeEecCCCcEEEEeeCCe
Q 023822          110 DNKYLRYFK---GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL---RVQGRPAAAYDDQGLVFAVAFGGY  183 (276)
Q Consensus       110 ~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~d~~  183 (276)
                      .++.-....   .+...+..+.+.+++..++.+ .++.|..- .+.++.-...   ....+..+.+.+++.+++++.++.
T Consensus       107 gG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~  184 (327)
T 2xbg_A          107 GGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGS  184 (327)
T ss_dssp             TTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSS
T ss_pred             CCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCc
Confidence            333222221   234457778877777666555 45544321 1222222222   122345688889999998887766


Q ss_pred             EEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecC-CCCCCceEEEEECCC
Q 023822          184 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK-PVSRNSTLEASFSPE  262 (276)
Q Consensus       184 i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~v~~~~~s~~  262 (276)
                      +..-+-..+..  ..... ......+..+++.++++.++ ++.+|.+++.+...++.-..+... ......+.++.+.++
T Consensus       185 ~~~S~d~gG~t--W~~~~-~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~  260 (327)
T 2xbg_A          185 FYSTWEPGQTA--WEPHN-RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTP  260 (327)
T ss_dssp             EEEEECTTCSS--CEEEE-CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSS
T ss_pred             EEEEeCCCCCc--eeECC-CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCC
Confidence            55433111111  11111 23345688899999987654 456788777653334443333311 012345889999998


Q ss_pred             CcEEEEec
Q 023822          263 GMFVISGR  270 (276)
Q Consensus       263 g~~l~~~~  270 (276)
                      +..++++.
T Consensus       261 ~~~~~~g~  268 (327)
T 2xbg_A          261 NEVWLAGG  268 (327)
T ss_dssp             SCEEEEES
T ss_pred             CEEEEEeC
Confidence            88777665

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.37  E-value=0.00018  Score=58.42  Aligned_cols=196  Identities=7%  Similarity=0.065  Sum_probs=109.6

Q ss_pred             CCcEEEEEEcCCCCEEEEeecC---C-eEEEEEccCCeee-eeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEc
Q 023822           34 NGRISSMDFHKSSSYLVTASDD---E-SIRLYDVTAATCL-KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL  108 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~~~~~d---~-~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~  108 (276)
                      ......++++++++++++....   . .+...+...+... ..+. .-.....+++.|+...|.++...  ++.|+.+|.
T Consensus       181 ~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~--~~~V~~~d~  257 (433)
T 4hw6_A          181 IGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYH--HAMISSYDP  257 (433)
T ss_dssp             CSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTT--CSEEEEECT
T ss_pred             CCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECC--CCEEEEEEC
Confidence            4557899999999944443311   1 2333333222110 1111 22345678899955555555432  788999998


Q ss_pred             cCCceeeee-cc-cCcceEEEEeccCCCEEE-EeeCCCeEEEEeccC--ceee--eeEee-----------------cCC
Q 023822          109 HDNKYLRYF-KG-HHDRVVSLSLCSSKDCFI-SGSLDRTVLLWDQRA--EKCQ--GLLRV-----------------QGR  164 (276)
Q Consensus       109 ~~~~~~~~~-~~-~~~~i~~~~~~~~~~~l~-~~~~d~~i~iwd~~~--~~~~--~~~~~-----------------~~~  164 (276)
                      .++.....+ .. ....-..++|+|+++.|+ +-...+.|+.++...  +...  ..+..                 ...
T Consensus       258 ~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P  337 (433)
T 4hw6_A          258 ATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGP  337 (433)
T ss_dssp             TTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSE
T ss_pred             CCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCC
Confidence            877652222 11 122234699999999544 445568899988652  2211  11111                 112


Q ss_pred             CeeEe---------cCCCcEEEEee-CCeEEEEecccCCCCCeeeeeec----------------CCCCCceEEEEC-CC
Q 023822          165 PAAAY---------DDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVG----------------GDISDANVVKFS-ND  217 (276)
Q Consensus       165 ~~~~~---------~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~----------------~~~~~i~~~~~~-~~  217 (276)
                      ..+++         .+++.++++-. .+.|+.++... .   +....-.                ..-.....++++ ++
T Consensus       338 ~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~G-~---v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~  413 (433)
T 4hw6_A          338 NQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPEG-R---VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKR  413 (433)
T ss_dssp             EEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTTS-E---EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTT
T ss_pred             ccEEEEccccccccCCCCcEEEEECCCCEEEEECCCC-C---EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCC
Confidence            35788         67777777666 68899998532 1   1111100                011236678888 56


Q ss_pred             CcEEEEeecCCcEEEEECC
Q 023822          218 GRLMLLTTMEGHIHVLDSF  236 (276)
Q Consensus       218 ~~~l~~~~~dg~i~i~d~~  236 (276)
                      |.++++=...+.|+.++++
T Consensus       414 g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          414 KCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             TEEEEEEGGGTEEEEEEEC
T ss_pred             CEEEEEeCCCCEEEEEecC
Confidence            6655555566778877753

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.36  E-value=0.00059  Score=58.06  Aligned_cols=200  Identities=10%  Similarity=0.055  Sum_probs=113.9

Q ss_pred             cCCeEEEEEccCCe-eeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCce-eeeecccCcceEEEEecc
Q 023822           54 DDESIRLYDVTAAT-CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY-LRYFKGHHDRVVSLSLCS  131 (276)
Q Consensus        54 ~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~i~~~~~~~  131 (276)
                      ....|+..++.... ........-.....++|.+.+..++.+...  .+.|..+++..... ...+...-.....+++.+
T Consensus        16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~--~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~   93 (619)
T 3s94_A           16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVS--EEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW   93 (619)
T ss_dssp             CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETT--TTEEEEEEC-----CEEEECSSCSCEEEEEEET
T ss_pred             ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECC--CCeEEEEEccCCCceEEEEeCCCCCcCeEEEEe
Confidence            34678888887543 122222223457889999988888877653  67888888876532 222332235678899998


Q ss_pred             CCC-EEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCC-cEEEEee--CCeEEEEecccCCCCCeeeeeecCC
Q 023822          132 SKD-CFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQG-LVFAVAF--GGYIRMFDARKYEKGPFDIFSVGGD  205 (276)
Q Consensus       132 ~~~-~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~-~~l~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~  205 (276)
                      .++ ++++-...+.|.+.++........+  .......++++|.+ .++.+..  .+.|...++.....    .......
T Consensus        94 ~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~----~~l~~~~  169 (619)
T 3s94_A           94 LGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR----FIIINSE  169 (619)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC----EEEECSS
T ss_pred             cCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce----EEEEeCC
Confidence            555 5555556789999998765433222  34456789999874 4444443  36777777764322    1112223


Q ss_pred             CCCceEEEECCCCcEEEEee-cCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCC
Q 023822          206 ISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  262 (276)
Q Consensus       206 ~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~  262 (276)
                      ....+.++++++++.|+.+. ..+.|..+|+..........   +.......+++..+
T Consensus       170 ~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~---~~~~~P~gi~~~~~  224 (619)
T 3s94_A          170 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK---GSLPHPFALTLFED  224 (619)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC------------CCCEEESSS
T ss_pred             CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEe---CCCCCceEEEEeCC
Confidence            45678999999766666554 56789999975433322222   11223345666555

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.36  E-value=0.00011  Score=56.75  Aligned_cols=155  Identities=14%  Similarity=0.129  Sum_probs=105.3

Q ss_pred             ceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeee-ecc----c--CcceEEEEe---ccCCCEEEEee-------
Q 023822           78 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRY-FKG----H--HDRVVSLSL---CSSKDCFISGS-------  140 (276)
Q Consensus        78 ~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~-~~~----~--~~~i~~~~~---~~~~~~l~~~~-------  140 (276)
                      ...+++|.+....+..++.  +.+.|..|+...+..... +..    .  ...+..+.|   .|+++++++..       
T Consensus        14 yPE~~~wd~~~g~~~vs~l--~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~   91 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNL--YKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF   91 (334)
T ss_dssp             CCSCEEEETTTTEEEEEET--TTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred             CCcCccCcCCCCEEEEEec--cCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence            4557899887777777764  289999999876543333 221    1  114578999   68877777543       


Q ss_pred             ------CCCeEEEEecc---CceeeeeEee---------------cCCCeeEecCCCcEEEEee-C-CeEEEEecccCCC
Q 023822          141 ------LDRTVLLWDQR---AEKCQGLLRV---------------QGRPAAAYDDQGLVFAVAF-G-GYIRMFDARKYEK  194 (276)
Q Consensus       141 ------~d~~i~iwd~~---~~~~~~~~~~---------------~~~~~~~~~~~~~~l~~~~-d-~~i~~~d~~~~~~  194 (276)
                            .+..|..||+.   +++.......               .....++..++|+..++.+ . +.|..++..... 
T Consensus        92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~-  170 (334)
T 2p9w_A           92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT-  170 (334)
T ss_dssp             TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC-
T ss_pred             cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE-
Confidence                  26789999999   7766554421               1245789999998888666 7 787777766421 


Q ss_pred             CCeeeeee----cCCCCCceEEEECCCCcEEEEeecCCcEEEEECCC
Q 023822          195 GPFDIFSV----GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR  237 (276)
Q Consensus       195 ~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  237 (276)
                        ...+..    .......+.|+++|+|+.|++....|.+..+|+.+
T Consensus       171 --~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          171 --VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             --EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             --EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence              111111    11223477999999998888876799999999874

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=98.35  E-value=0.00057  Score=54.55  Aligned_cols=210  Identities=15%  Similarity=0.241  Sum_probs=133.6

Q ss_pred             EEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCC-ceeeee
Q 023822           39 SMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN-KYLRYF  117 (276)
Q Consensus        39 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~-~~~~~~  117 (276)
                      +.-.+|..+.+|.-. ..++.|+|+++.+.+..+.-.+ +|..-.|-.+ +.|+..+    +..|+-|++... .+.+.+
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~-~~l~lVT----~taVyHWsi~~~s~P~kvF  142 (494)
T 1bpo_A           70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-NTVALVT----DNAVYHWSMEGESQPVKMF  142 (494)
T ss_dssp             EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEET-TEEEEEC----SSEEEEEESSSSCCCEEEE
T ss_pred             eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCC-CeEEEEc----CCeeEEecccCCCCchhhe
Confidence            345678878787665 6799999999988887776544 5777777644 4555555    789999999753 456666


Q ss_pred             cccC----cceEEEEeccCCCEEEEeeC-------CCeEEEEeccCceeeeeEeecCCCeeEecCCC-----cEEEEee-
Q 023822          118 KGHH----DRVVSLSLCSSKDCFISGSL-------DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQG-----LVFAVAF-  180 (276)
Q Consensus       118 ~~~~----~~i~~~~~~~~~~~l~~~~~-------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~~-  180 (276)
                      ..|.    ..|..-..+++.++++..+-       .|.+.+|..+.+... .+..+......+-.+|     .+++.+. 
T Consensus       143 dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ-~ieGhaa~F~~~~~~g~~~~~~lf~fa~r  221 (494)
T 1bpo_A          143 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-PIEGHAASFAQFKMEGNAEESTLFCFAVR  221 (494)
T ss_dssp             ECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEE-EECCSEEEEEEEECTTCSSEEEEEEEEEC
T ss_pred             ecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccc-hheeeeeeeEEEecCCCCCCceEEEEEEe
Confidence            5553    46777778889997764432       367888887765432 2222222222222221     3555554 


Q ss_pred             ---CCeEEEEecccC--CCCCeeee--e--e--cCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCC
Q 023822          181 ---GGYIRMFDARKY--EKGPFDIF--S--V--GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV  249 (276)
Q Consensus       181 ---d~~i~~~d~~~~--~~~~~~~~--~--~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  249 (276)
                         .+.+++.++...  ...++...  .  +  .....-..++..++.-..++.-+.-|.|++||+.++.++..-+   -
T Consensus       222 ~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nr---I  298 (494)
T 1bpo_A          222 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR---I  298 (494)
T ss_dssp             STTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE---C
T ss_pred             cCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeec---c
Confidence               378999998653  11122111  1  1  1122334568888887888888999999999999999988766   2


Q ss_pred             CCCceEEEEE
Q 023822          250 SRNSTLEASF  259 (276)
Q Consensus       250 ~~~~v~~~~~  259 (276)
                      ....|...+-
T Consensus       299 s~~~iF~t~~  308 (494)
T 1bpo_A          299 SGETIFVTAP  308 (494)
T ss_dssp             CSSCEEEEEE
T ss_pred             cCCceEEecc
Confidence            3444444333

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.26  E-value=0.00075  Score=51.83  Aligned_cols=220  Identities=10%  Similarity=0.115  Sum_probs=110.2

Q ss_pred             CCCEEEEee-cC-----CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCC--CCCceEEEEccCCc---e
Q 023822           45 SSSYLVTAS-DD-----ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG--WDESLRLLSLHDNK---Y  113 (276)
Q Consensus        45 ~~~~l~~~~-~d-----~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~--~d~~i~~~d~~~~~---~  113 (276)
                      ++.+++.|+ .+     ..+.+||+.+.+-...-..............++..++.++..+  ....+.+||+.+.+   -
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W   93 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVW   93 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCee
Confidence            445666666 33     3688899877653322111111111122223566677776521  12468899988765   2


Q ss_pred             ee--eecccCcceEEEEeccCCCEEEEeeCC-----CeEEEEeccCceeeeeEe--ecCCCeeEecCCCcEEEEee-C--
Q 023822          114 LR--YFKGHHDRVVSLSLCSSKDCFISGSLD-----RTVLLWDQRAEKCQGLLR--VQGRPAAAYDDQGLVFAVAF-G--  181 (276)
Q Consensus       114 ~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~-d--  181 (276)
                      ..  .+.........+.  .++++++.|+.+     ..+.+||+.+.+-...-.  .......+..-++++++.+. +  
T Consensus        94 ~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~  171 (301)
T 2vpj_A           94 YSVAPMNVRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGL  171 (301)
T ss_dssp             EEECCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSS
T ss_pred             EECCCCCCCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCC
Confidence            22  2221111112222  266777777654     368899988765443221  11111222223566666654 2  


Q ss_pred             ---CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecC-----CcEEEEECCCCcEEEEeecCCCCCCc
Q 023822          182 ---GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME-----GHIHVLDSFRGTLLSTYNVKPVSRNS  253 (276)
Q Consensus       182 ---~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~  253 (276)
                         ..+.+||+.+.+=  ..+..+.........+.  -++++++.|+.+     ..+.+||+.+.+-...-... .....
T Consensus       172 ~~~~~~~~~d~~~~~W--~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p-~~r~~  246 (301)
T 2vpj_A          172 NILNSVEKYDPHTGHW--TNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT-TPRCY  246 (301)
T ss_dssp             CBCCCEEEEETTTTEE--EEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS-SCCBS
T ss_pred             cccceEEEEeCCCCcE--EeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC-Ccccc
Confidence               5688899876431  11111111111122222  256777777764     46899999887654432211 11122


Q ss_pred             eEEEEECCCCcEEEEecCCC
Q 023822          254 TLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       254 v~~~~~s~~g~~l~~~~~dg  273 (276)
                      ...+.  -++++++.|+.++
T Consensus       247 ~~~~~--~~~~i~v~GG~~~  264 (301)
T 2vpj_A          247 VGATV--LRGRLYAIAGYDG  264 (301)
T ss_dssp             CEEEE--ETTEEEEECCBCS
T ss_pred             eeEEE--ECCEEEEEcCcCC
Confidence            22222  2677888887664

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.23  E-value=0.00095  Score=51.98  Aligned_cols=175  Identities=10%  Similarity=0.155  Sum_probs=105.0

Q ss_pred             cCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccC----CC---EEEEeeC---CCeEEEEecc--Cce
Q 023822           87 HPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSS----KD---CFISGSL---DRTVLLWDQR--AEK  154 (276)
Q Consensus        87 ~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~----~~---~l~~~~~---d~~i~iwd~~--~~~  154 (276)
                      ....++....   .+-+.+||+ +++.++.+..  +.++.+..-|+    ++   ++++..+   +++|.+|++.  +.+
T Consensus        39 ~~s~ii~t~k---~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~  112 (355)
T 3amr_A           39 QNSKLITTNK---KSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT  112 (355)
T ss_dssp             GGCEEEEEET---TTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC
T ss_pred             CccEEEEEcC---CCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc
Confidence            3445555555   788999999 8888888753  45666666552    22   2333333   5789999773  332


Q ss_pred             eeeeE-e--------ecCCCeeEe--cCC-Cc-EEE-EeeCCeEEEEecccCCCC---CeeeeeecCCCCCceEEEECCC
Q 023822          155 CQGLL-R--------VQGRPAAAY--DDQ-GL-VFA-VAFGGYIRMFDARKYEKG---PFDIFSVGGDISDANVVKFSND  217 (276)
Q Consensus       155 ~~~~~-~--------~~~~~~~~~--~~~-~~-~l~-~~~d~~i~~~d~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~  217 (276)
                       +..+ .        ...+..+++  +|. +. ++. ...++.+..|++......   ...+..+. ....+-.++..+.
T Consensus       113 -l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~-lgsq~EgcvvDd~  190 (355)
T 3amr_A          113 -LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK-MNSQTEGMAADDE  190 (355)
T ss_dssp             -EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE-CSSCEEEEEEETT
T ss_pred             -eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec-CCCCcceEEEcCC
Confidence             3333 1        133455666  664 43 333 334899999998542211   11122222 2346788899998


Q ss_pred             CcEEEEeecCCcEEEEECC-----CCcEEEEeecCCCCCCceEEEEE--CCCCc-EEEEec
Q 023822          218 GRLMLLTTMEGHIHVLDSF-----RGTLLSTYNVKPVSRNSTLEASF--SPEGM-FVISGR  270 (276)
Q Consensus       218 ~~~l~~~~~dg~i~i~d~~-----~~~~~~~~~~~~~~~~~v~~~~~--s~~g~-~l~~~~  270 (276)
                      ...|+.+-++.-|..++..     +++.+..+... .....+..+++  .++++ ||++++
T Consensus       191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g-~l~aDvEGLai~~~~~g~gyLivSs  250 (355)
T 3amr_A          191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGR-HLTRDIEGLTIYYAADGKGYLMASS  250 (355)
T ss_dssp             TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSS-SBCSCEEEEEEEECGGGCEEEEEEE
T ss_pred             CCeEEEecccceEEEEeCCcCCCCCceEEEEecCC-ccccCcceEEEEecCCCCEEEEEEc
Confidence            8889999998777777754     34555554321 23346888888  55665 666655

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.23  E-value=0.00038  Score=59.80  Aligned_cols=112  Identities=11%  Similarity=0.047  Sum_probs=71.3

Q ss_pred             EEEEec-cCCeEEEeccCCC--------CCceEEEEccCCcee--eeec-ccCcceEEEEeccCCCEEEEeeC-CCeEEE
Q 023822           81 LVCFTS-HPTTVIYSSKNGW--------DESLRLLSLHDNKYL--RYFK-GHHDRVVSLSLCSSKDCFISGSL-DRTVLL  147 (276)
Q Consensus        81 ~~~~~~-~~~~l~~~~~~~~--------d~~i~~~d~~~~~~~--~~~~-~~~~~i~~~~~~~~~~~l~~~~~-d~~i~i  147 (276)
                      .+++.+ +++.++.++....        ...+.+||+.+++..  ..+. .+.....++++.+++++++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            566777 7777787765210        115889998877532  2222 12333445677889999999885 458999


Q ss_pred             EeccCceeeeeE--eecC-CCeeEecCCCcEEEEee--C-----CeEEEEecccC
Q 023822          148 WDQRAEKCQGLL--RVQG-RPAAAYDDQGLVFAVAF--G-----GYIRMFDARKY  192 (276)
Q Consensus       148 wd~~~~~~~~~~--~~~~-~~~~~~~~~~~~l~~~~--d-----~~i~~~d~~~~  192 (276)
                      ||..+.+-...-  .... ...++..+++++++.+.  +     ..+.+||..+.
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~  324 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  324 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence            999877544322  1111 22456667888877776  3     57899998653

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.22  E-value=0.00034  Score=54.99  Aligned_cols=162  Identities=14%  Similarity=0.175  Sum_probs=95.9

Q ss_pred             CCceEEEEccCC--ceee-eecc-----cCcceEEEEecc--CCC-EEEEe-eC--CCeEEEEeccCcee----eeeEe-
Q 023822          100 DESLRLLSLHDN--KYLR-YFKG-----HHDRVVSLSLCS--SKD-CFISG-SL--DRTVLLWDQRAEKC----QGLLR-  160 (276)
Q Consensus       100 d~~i~~~d~~~~--~~~~-~~~~-----~~~~i~~~~~~~--~~~-~l~~~-~~--d~~i~iwd~~~~~~----~~~~~-  160 (276)
                      +|.|.++|+.+.  +... .+.+     .......+.+.+  ++. +|+.+ ..  +.+|.+|++.....    +..+. 
T Consensus        82 ~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g  161 (355)
T 3sre_A           82 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH  161 (355)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred             CCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecccc
Confidence            899999998743  2211 1222     223566777765  454 34444 33  46788887765321    12222 


Q ss_pred             --ecCCCeeEecCCCcEEEEee----C--------------CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcE
Q 023822          161 --VQGRPAAAYDDQGLVFAVAF----G--------------GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRL  220 (276)
Q Consensus       161 --~~~~~~~~~~~~~~~l~~~~----d--------------~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  220 (276)
                        ....+.+.+.++|.++++..    |              +.|+.+|..  +     .......-...+.++|+||++.
T Consensus       162 ~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~-----~~~~~~~l~~pNGia~spDg~~  234 (355)
T 3sre_A          162 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--D-----VRVVAEGFDFANGINISPDGKY  234 (355)
T ss_dssp             TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--C-----CEEEEEEESSEEEEEECTTSSE
T ss_pred             CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--e-----EEEeecCCcccCcceECCCCCE
Confidence              12245788889998877754    1              445555542  1     1111122345788999999988


Q ss_pred             EEEee-cCCcEEEEECCC-CcEE--EEeecCCCCCCceEEEEECC-CCcEEEEecCC
Q 023822          221 MLLTT-MEGHIHVLDSFR-GTLL--STYNVKPVSRNSTLEASFSP-EGMFVISGRVS  272 (276)
Q Consensus       221 l~~~~-~dg~i~i~d~~~-~~~~--~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~d  272 (276)
                      |+.+. ..+.|..|++.. ++..  ..+.    ..+..-.+++.+ +|++.+++..+
T Consensus       235 lYvadt~~~~I~~~~~~~~g~l~~~~~~~----~~g~PDGi~vD~e~G~lwva~~~~  287 (355)
T 3sre_A          235 VYIAELLAHKIHVYEKHANWTLTPLRVLS----FDTLVDNISVDPVTGDLWVGCHPN  287 (355)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEE----CSSEEEEEEECTTTCCEEEEEESC
T ss_pred             EEEEeCCCCeEEEEEECCCCcEecCEEEe----CCCCCceEEEeCCCCcEEEEecCC
Confidence            77765 568899999863 4332  2332    346778899999 59887766544

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.20  E-value=0.001  Score=51.16  Aligned_cols=218  Identities=9%  Similarity=0.059  Sum_probs=108.1

Q ss_pred             CEEEEeec--CCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccC-CCCCceEEEEccCCceeee--ecccC
Q 023822           47 SYLVTASD--DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN-GWDESLRLLSLHDNKYLRY--FKGHH  121 (276)
Q Consensus        47 ~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~~d~~i~~~d~~~~~~~~~--~~~~~  121 (276)
                      .+++.|+.  ...+.+||..+.+-...-..........+...++..++.++.. ..-..+.+||+.+++-...  +....
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r   92 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPR   92 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCC
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccc
Confidence            34555554  3578899988765332211111111111222366666776641 1136788899887653222  22111


Q ss_pred             cceEEEEeccCCCEEEEeeCC------CeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee----------CCe
Q 023822          122 DRVVSLSLCSSKDCFISGSLD------RTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF----------GGY  183 (276)
Q Consensus       122 ~~i~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~----------d~~  183 (276)
                      .....+.  -++++++.|+.+      ..+.+||..+.+-...-  ........+..-++++++.+.          -..
T Consensus        93 ~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~  170 (306)
T 3ii7_A           93 DSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNS  170 (306)
T ss_dssp             BSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCC
T ss_pred             cceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccce
Confidence            1112222  267777887765      46889998877543322  111111122223556666554          234


Q ss_pred             EEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecC-----CcEEEEECCCCcEEEEeecCCCCCCceEEEE
Q 023822          184 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME-----GHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS  258 (276)
Q Consensus       184 i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~  258 (276)
                      +.+||+.+.+=  .....+......-..+.+  ++++++.|+.+     ..+.+||..+.+-...-.. +........+.
T Consensus       171 ~~~yd~~~~~W--~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~  245 (306)
T 3ii7_A          171 CEVYDPATETW--TELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPM-PWKGVTVKCAA  245 (306)
T ss_dssp             EEEEETTTTEE--EEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCC-SCCBSCCEEEE
T ss_pred             EEEeCCCCCeE--EECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCC-CCCccceeEEE
Confidence            88888876431  111111111111122222  66777777654     3588999887754433221 11222222333


Q ss_pred             ECCCCcEEEEecCCC
Q 023822          259 FSPEGMFVISGRVSP  273 (276)
Q Consensus       259 ~s~~g~~l~~~~~dg  273 (276)
                      +  ++++++.|+.++
T Consensus       246 ~--~~~i~v~GG~~~  258 (306)
T 3ii7_A          246 V--GSIVYVLAGFQG  258 (306)
T ss_dssp             E--TTEEEEEECBCS
T ss_pred             E--CCEEEEEeCcCC
Confidence            3  678888888664

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=98.16  E-value=0.00051  Score=54.69  Aligned_cols=143  Identities=11%  Similarity=0.095  Sum_probs=93.2

Q ss_pred             ccCCCEEEEeeCCCeEEEEeccCceeeeeEeec------CCCeeEecCCCcEEEEeeCCeEEEEecccCCCCC-------
Q 023822          130 CSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ------GRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGP-------  196 (276)
Q Consensus       130 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~-------  196 (276)
                      +.++..++.+- ++.||.-++......+.++..      .+..+..+|+|.+||..++..|.|..+..+....       
T Consensus        29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~  107 (452)
T 3pbp_A           29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQD  107 (452)
T ss_dssp             ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHH
T ss_pred             EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccc
Confidence            34555555543 467887777744444444332      5678999999999999999999999987432111       


Q ss_pred             -ee--eeeecC----CCCCceEEEECCC---CcEEEEeecCCcEEEEECCCCcE-EEEeec------CCCCCCceEEEEE
Q 023822          197 -FD--IFSVGG----DISDANVVKFSND---GRLMLLTTMEGHIHVLDSFRGTL-LSTYNV------KPVSRNSTLEASF  259 (276)
Q Consensus       197 -~~--~~~~~~----~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~------~~~~~~~v~~~~~  259 (276)
                       ..  .+.+..    ...+|..+.|+|-   +..|++-..|+.|++||+..... ...+..      .......|.+++|
T Consensus       108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~F  187 (452)
T 3pbp_A          108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEF  187 (452)
T ss_dssp             TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEE
T ss_pred             ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEE
Confidence             11  222221    2467999999995   46799999999999999975221 112221      0122367889999


Q ss_pred             CCCCcEEEE--ecCCC
Q 023822          260 SPEGMFVIS--GRVSP  273 (276)
Q Consensus       260 s~~g~~l~~--~~~dg  273 (276)
                      .+++-.|..  .+..|
T Consensus       188 g~~~lTLYvl~~t~~G  203 (452)
T 3pbp_A          188 SKDGLTLYCLNTTEGG  203 (452)
T ss_dssp             CTTSSCEEEEECTTSC
T ss_pred             cCCCcEEEEEecCCCC
Confidence            998866655  33555

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.16  E-value=0.0025  Score=54.29  Aligned_cols=202  Identities=11%  Similarity=0.071  Sum_probs=121.9

Q ss_pred             CcEEEEEEcCCCCEEEEe-ecCCeEEEEEccCCeeeeeeee------eeeceEEEEEeccCCeEEEeccCCCCCceEEEE
Q 023822           35 GRISSMDFHKSSSYLVTA-SDDESIRLYDVTAATCLKTINS------KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS  107 (276)
Q Consensus        35 ~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d  107 (276)
                      ..+..++|.+.++.|+-+ ...+.|+.++.........+..      ....+..+++...++.|..+...  .+.|.+.+
T Consensus       340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~--~~~I~v~~  417 (628)
T 4a0p_A          340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEA--TNVINVTR  417 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETT--TTEEEEEE
T ss_pred             CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCC--CCEEEEEE
Confidence            457889999866655544 4567888888764332222322      22357899999888887766542  78899999


Q ss_pred             ccCCceeeee-cccCcceEEEEecc-CCCEEEEeeCCC--eEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-
Q 023822          108 LHDNKYLRYF-KGHHDRVVSLSLCS-SKDCFISGSLDR--TVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-  180 (276)
Q Consensus       108 ~~~~~~~~~~-~~~~~~i~~~~~~~-~~~~l~~~~~d~--~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-  180 (276)
                      +. ++....+ .........+++.| .+.++.+-....  .|...++.........  .......+++++++..|..+. 
T Consensus       418 ~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~  496 (628)
T 4a0p_A          418 LD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADS  496 (628)
T ss_dssp             TT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred             CC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeC
Confidence            86 4443333 33345679999999 555555533333  5666666544332222  233456799998765554444 


Q ss_pred             -CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEe
Q 023822          181 -GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY  244 (276)
Q Consensus       181 -d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  244 (276)
                       .+.|..+++.....  . .+ ..........++... +.++.+-.....|...|..+|+....+
T Consensus       497 ~~~~I~~~~~dG~~r--~-~~-~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~i  556 (628)
T 4a0p_A          497 DLRRIESSDLSGANR--I-VL-EDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTKV  556 (628)
T ss_dssp             TTTEEEEEETTSCSC--E-EE-ECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEEE
T ss_pred             CCCEEEEEeCCCCce--E-EE-EcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEEE
Confidence             58999999865332  1 11 112233456777755 454454455677888887766644433

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=98.12  E-value=0.0018  Score=50.73  Aligned_cols=240  Identities=10%  Similarity=0.041  Sum_probs=130.3

Q ss_pred             eeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeee--eee----eeeeeceEEEEEecc---CCeEEEeccCC
Q 023822           28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL--KTI----NSKKYGVDLVCFTSH---PTTVIYSSKNG   98 (276)
Q Consensus        28 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~----~~~~~~v~~~~~~~~---~~~l~~~~~~~   98 (276)
                      ..+...-.....|+|.|+|.++++--..|.|++++..+++..  ..+    .........++++|+   +..|.+.....
T Consensus        25 ~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~  104 (347)
T 3das_A           25 RTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA  104 (347)
T ss_dssp             EEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred             EEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence            334444556789999999997777655899999986655432  111    122456789999985   45554432111


Q ss_pred             CCCceEEEEccCCc--------e--e-eeecc-cCcceEEEEeccCCCEEEEeeC-------------CCeEEEEeccCc
Q 023822           99 WDESLRLLSLHDNK--------Y--L-RYFKG-HHDRVVSLSLCSSKDCFISGSL-------------DRTVLLWDQRAE  153 (276)
Q Consensus        99 ~d~~i~~~d~~~~~--------~--~-~~~~~-~~~~i~~~~~~~~~~~l~~~~~-------------d~~i~iwd~~~~  153 (276)
                      .++.|.-|....+.        .  + ..+.. ....-..|.|.|||.++++.+.             .|.|.-.+....
T Consensus       105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~  184 (347)
T 3das_A          105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE  184 (347)
T ss_dssp             SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred             CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence            15566666655421        1  1 11211 1112457999999987776542             355655565432


Q ss_pred             ---------eeeeeEeecCCCeeEecCCCcEEEEee--CCeEEEEecccCCCC--C------------eeeeeecCCCCC
Q 023822          154 ---------KCQGLLRVQGRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEKG--P------------FDIFSVGGDISD  208 (276)
Q Consensus       154 ---------~~~~~~~~~~~~~~~~~~~~~~l~~~~--d~~i~~~d~~~~~~~--~------------~~~~~~~~~~~~  208 (276)
                               ..+...-......++|+|++.++++-.  ++.=.+--++.+..-  +            ........+...
T Consensus       185 ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~a  264 (347)
T 3das_A          185 PAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEAS  264 (347)
T ss_dssp             BCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCC
T ss_pred             ccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCC
Confidence                     011111222345799999988877665  332222222222110  0            001112222234


Q ss_pred             ceEEEECCCCcEEEEeecCCcEEEEECCCCcEE---EEeecCCCCCCceEEEEECCCCcEEEEec
Q 023822          209 ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL---STYNVKPVSRNSTLEASFSPEGMFVISGR  270 (276)
Q Consensus       209 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  270 (276)
                      ...++|. +|..+...-..+.|....+......   ..+.  .+..+.+.+++..|||.++++.+
T Consensus       265 p~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l--~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          265 PSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFL--EGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             EEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEES--TTTSSCEEEEEEEETTEEEEEEC
T ss_pred             CcceEEE-cCceeeccccCCEEEEEEecCCceecceEEee--cCCCCCccEEEECCCCcEEEEEc
Confidence            5567776 3555555545566766666554321   1121  13457899999999998766543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.11  E-value=0.0015  Score=50.11  Aligned_cols=188  Identities=12%  Similarity=0.115  Sum_probs=97.1

Q ss_pred             CCCEEEEeecC-----CeEEEEEccCCe---e--eeeeeeeeeceEEEEEeccCCeEEEeccCCC--CCceEEEEccCCc
Q 023822           45 SSSYLVTASDD-----ESIRLYDVTAAT---C--LKTINSKKYGVDLVCFTSHPTTVIYSSKNGW--DESLRLLSLHDNK  112 (276)
Q Consensus        45 ~~~~l~~~~~d-----~~i~iwd~~~~~---~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~--d~~i~~~d~~~~~  112 (276)
                      ++.+++.|+.+     ..+.+||..+.+   -  +..+......-..+.  .+++.++.++..+.  ...+.+||+.+.+
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~  139 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQ  139 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCCe
Confidence            56677777754     468899987655   2  222222111112222  26666677664221  2468889987765


Q ss_pred             eee--eecccCcceEEEEeccCCCEEEEeeCC-----CeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-C-
Q 023822          113 YLR--YFKGHHDRVVSLSLCSSKDCFISGSLD-----RTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-G-  181 (276)
Q Consensus       113 ~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d-  181 (276)
                      -..  .+.........+.  .++++++.|+.+     ..+.+||+.+.+-...-  ........+..-++++++.+. + 
T Consensus       140 W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~  217 (301)
T 2vpj_A          140 WSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDG  217 (301)
T ss_dssp             EEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred             EEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCC
Confidence            322  2221111112222  267777777764     45889998877544322  111111122223556666654 2 


Q ss_pred             ----CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecC-----CcEEEEECCCCcE
Q 023822          182 ----GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME-----GHIHVLDSFRGTL  240 (276)
Q Consensus       182 ----~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~  240 (276)
                          ..+.+||+.+.+=  ..+............+.+  ++++++.|+.+     ..+.+||..+.+-
T Consensus       218 ~~~~~~v~~yd~~~~~W--~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  281 (301)
T 2vpj_A          218 TAHLSSVEAYNIRTDSW--TTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDSW  281 (301)
T ss_dssp             SSBCCCEEEEETTTTEE--EEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred             CcccceEEEEeCCCCcE--EECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence                4689999876431  111111111112222222  67777887765     3578899877654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=98.10  E-value=0.00055  Score=54.51  Aligned_cols=145  Identities=14%  Similarity=0.187  Sum_probs=95.2

Q ss_pred             EeccCCeEEEeccCCCCCceEEEEccCCceeeeeccc----CcceEEEEeccCCCEEEEeeCCCeEEEEeccCce-----
Q 023822           84 FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH----HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK-----  154 (276)
Q Consensus        84 ~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----  154 (276)
                      .+.++..++++.    ++.||.-++......+.+...    -..|..+..+|+|++||..+ +..|.+-.+..+.     
T Consensus        28 ~~~n~t~i~~a~----~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~  102 (452)
T 3pbp_A           28 SSQNGTRIVFIQ----DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVED  102 (452)
T ss_dssp             EETTTTEEEEEE----TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCC
T ss_pred             EEcCCCEEEEEE----CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcc
Confidence            345677777766    788888887754444444432    22578899999999998886 4578888877321     


Q ss_pred             -------eeeeEe--------ecCCCeeEecCCC----cEEEEeeCCeEEEEecccCCCCCee------eeeecCCCCCc
Q 023822          155 -------CQGLLR--------VQGRPAAAYDDQG----LVFAVAFGGYIRMFDARKYEKGPFD------IFSVGGDISDA  209 (276)
Q Consensus       155 -------~~~~~~--------~~~~~~~~~~~~~----~~l~~~~d~~i~~~d~~~~~~~~~~------~~~~~~~~~~i  209 (276)
                             ..+.++        ..++..+.|+|-+    .+++...|+.|++||+......|..      .+........+
T Consensus       103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev  182 (452)
T 3pbp_A          103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDI  182 (452)
T ss_dssp             HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCE
T ss_pred             cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceE
Confidence                   011222        2346689999954    6777777999999999874443431      12222333578


Q ss_pred             eEEEECCCCcEEEEee--cCCcEEEE
Q 023822          210 NVVKFSNDGRLMLLTT--MEGHIHVL  233 (276)
Q Consensus       210 ~~~~~~~~~~~l~~~~--~dg~i~i~  233 (276)
                      .+++|.+++-.|+..+  ..|.|+-.
T Consensus       183 ~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          183 TDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             EEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            8999999886666644  77777643

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.10  E-value=0.0013  Score=54.02  Aligned_cols=154  Identities=13%  Similarity=0.191  Sum_probs=96.2

Q ss_pred             eEEEEEec-cCCeEEEeccCCCCCceEEEEccCCceeeeeccc---CcceEEEEe-------ccCCCEEEEeeCCC----
Q 023822           79 VDLVCFTS-HPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH---HDRVVSLSL-------CSSKDCFISGSLDR----  143 (276)
Q Consensus        79 v~~~~~~~-~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~---~~~i~~~~~-------~~~~~~l~~~~~d~----  143 (276)
                      ...|+|.| +...|+++...  .+.|++.|+.++.........   ......++|       ++++++|+++...+    
T Consensus       141 p~~la~dp~~~~~Lyv~~~~--~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~  218 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDG--HKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD  218 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEET--EEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred             CCEEEEccCCCCEEEEEECC--CCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence            46889998 46666666542  467888998877655443321   235789999       99999666665543    


Q ss_pred             ---eEEEEeccC-ceee-----eeE-eecCCCeeEecCC-CcEEEEee-CCeEEEEecc-------cCCC-CC-------
Q 023822          144 ---TVLLWDQRA-EKCQ-----GLL-RVQGRPAAAYDDQ-GLVFAVAF-GGYIRMFDAR-------KYEK-GP-------  196 (276)
Q Consensus       144 ---~i~iwd~~~-~~~~-----~~~-~~~~~~~~~~~~~-~~~l~~~~-d~~i~~~d~~-------~~~~-~~-------  196 (276)
                         .|.+.+... +...     ..+ .......++++|+ +.++++.. ++.|..+|+.       ++.. .+       
T Consensus       219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          219 ESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             GEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             cCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence               266665333 1221     122 3345568899995 55555555 7889999997       4332 00       


Q ss_pred             -e-eeeeecCCCCCceEEEECCCCcEEEEe-ecCCcEEEEEC
Q 023822          197 -F-DIFSVGGDISDANVVKFSNDGRLMLLT-TMEGHIHVLDS  235 (276)
Q Consensus       197 -~-~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~  235 (276)
                       . .+... ........++|+|+|++|+.+ +....|+.++.
T Consensus       299 ~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          299 TFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             TEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             ccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence             1 12222 223456889999999965555 45678888654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.09  E-value=0.0012  Score=50.83  Aligned_cols=190  Identities=8%  Similarity=0.081  Sum_probs=98.3

Q ss_pred             CCCEEEEeecC----CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccC---CCCCceEEEEccCCceeee-
Q 023822           45 SSSYLVTASDD----ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN---GWDESLRLLSLHDNKYLRY-  116 (276)
Q Consensus        45 ~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~---~~d~~i~~~d~~~~~~~~~-  116 (276)
                      ++.+++.|+.+    ..+.+||..+.+-...-..........+...+++.++.++..   .....+.+||+.+.+-... 
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~  134 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP  134 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC
Confidence            56677777754    578899988765432211111111111222366666777652   1125688999887653221 


Q ss_pred             -ecccCcceEEEEeccCCCEEEEeeC---------CCeEEEEeccCceeeeeE--eecCCC-eeEecCCCcEEEEee-C-
Q 023822          117 -FKGHHDRVVSLSLCSSKDCFISGSL---------DRTVLLWDQRAEKCQGLL--RVQGRP-AAAYDDQGLVFAVAF-G-  181 (276)
Q Consensus       117 -~~~~~~~i~~~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~--~~~~~~-~~~~~~~~~~l~~~~-d-  181 (276)
                       +.........+.  -++++++.|+.         -..+.+||+.+.+-...-  ...... .+... ++++++.+. + 
T Consensus       135 ~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~  211 (306)
T 3ii7_A          135 SMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNG  211 (306)
T ss_dssp             CCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEET
T ss_pred             CCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCC
Confidence             111111111222  26677777764         345889999877543322  111111 22222 556666554 2 


Q ss_pred             ----CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecC-----CcEEEEECCCCcEE
Q 023822          182 ----GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME-----GHIHVLDSFRGTLL  241 (276)
Q Consensus       182 ----~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~  241 (276)
                          ..+.+||+.+.+=  ..+..+.........+.+  ++++++.|+.+     ..+.+||..+.+-.
T Consensus       212 ~~~~~~~~~yd~~~~~W--~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~  276 (306)
T 3ii7_A          212 LGGLDNVEYYDIKLNEW--KMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWV  276 (306)
T ss_dssp             TEEBCCEEEEETTTTEE--EECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred             CCCCceEEEeeCCCCcE--EECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence                5688999876431  111111111122233333  67788888754     46899998876543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=98.08  E-value=0.0014  Score=50.48  Aligned_cols=219  Identities=11%  Similarity=0.045  Sum_probs=108.2

Q ss_pred             CCCEEEEeecC----CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEecc----CC--CCCceEEEEccCCcee
Q 023822           45 SSSYLVTASDD----ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK----NG--WDESLRLLSLHDNKYL  114 (276)
Q Consensus        45 ~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----~~--~d~~i~~~d~~~~~~~  114 (276)
                      ++.+++.|+.+    ..+.+||..+.+-...-..............++..++.++.    .+  ....+.+||+.+.+-.
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~  103 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS  103 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEe
Confidence            45677777632    36889998876543221111111111111225666666653    10  1246888998776432


Q ss_pred             e--eecccCcceEEEEeccCCCEEEEeeCC-----CeEEEEeccCceeeeeE--eecCCC-eeEecCCCcEEEEee-C--
Q 023822          115 R--YFKGHHDRVVSLSLCSSKDCFISGSLD-----RTVLLWDQRAEKCQGLL--RVQGRP-AAAYDDQGLVFAVAF-G--  181 (276)
Q Consensus       115 ~--~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~--~~~~~~-~~~~~~~~~~l~~~~-d--  181 (276)
                      .  .+.........+.+  ++++++.|+.+     ..+.+||+.+.+-...-  ...... .++.. ++++++.+. +  
T Consensus       104 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~  180 (308)
T 1zgk_A          104 PCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGT  180 (308)
T ss_dssp             ECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSS
T ss_pred             ECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEEeCCCCC
Confidence            2  12111112222222  66777777643     35888998876543322  111111 22222 566666554 2  


Q ss_pred             ---CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecC-----CcEEEEECCCCcEEEEeecCCCCCCc
Q 023822          182 ---GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME-----GHIHVLDSFRGTLLSTYNVKPVSRNS  253 (276)
Q Consensus       182 ---~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~  253 (276)
                         ..+.+||+.+.+=  .....+.........+.+  ++++++.|+.+     ..+.+||+.+.+-...-.. +.....
T Consensus       181 ~~~~~~~~yd~~~~~W--~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~-p~~r~~  255 (308)
T 1zgk_A          181 NRLNSAECYYPERNEW--RMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM-KHRRSA  255 (308)
T ss_dssp             CBCCCEEEEETTTTEE--EECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCC-SSCCBS
T ss_pred             CcCceEEEEeCCCCeE--eeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCC-CCCccc
Confidence               4688899876431  001111111112222333  67777877764     4699999887765432221 111112


Q ss_pred             eEEEEECCCCcEEEEecCCC
Q 023822          254 TLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       254 v~~~~~s~~g~~l~~~~~dg  273 (276)
                      ...+.  -++++++.|+.++
T Consensus       256 ~~~~~--~~~~i~v~GG~~~  273 (308)
T 1zgk_A          256 LGITV--HQGRIYVLGGYDG  273 (308)
T ss_dssp             CEEEE--ETTEEEEECCBCS
T ss_pred             eEEEE--ECCEEEEEcCcCC
Confidence            22222  2678888887664

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=98.05  E-value=0.0022  Score=49.28  Aligned_cols=218  Identities=11%  Similarity=0.125  Sum_probs=106.4

Q ss_pred             CCEEEEeecC----CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCC--CCCceEEEEccCCceee--ee
Q 023822           46 SSYLVTASDD----ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG--WDESLRLLSLHDNKYLR--YF  117 (276)
Q Consensus        46 ~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~--~d~~i~~~d~~~~~~~~--~~  117 (276)
                      +.+++.|+.+    ..+..||+.+.+-...-..............++..++.++..+  .-..+.+||..+.+-..  .+
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~   95 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANM   95 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCC
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCC
Confidence            3455566543    3578889877653322111111111111222666677776421  12468889987765322  12


Q ss_pred             cccCcceEEEEeccCCCEEEEeeCCC-----eEEEEeccCceeeeeE--eecCCC-eeEecCCCcEEEEee-C-------
Q 023822          118 KGHHDRVVSLSLCSSKDCFISGSLDR-----TVLLWDQRAEKCQGLL--RVQGRP-AAAYDDQGLVFAVAF-G-------  181 (276)
Q Consensus       118 ~~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~--~~~~~~-~~~~~~~~~~l~~~~-d-------  181 (276)
                      .........+.  -++.+++.|+.++     .+.+||+.+.+-...-  ...... .++. -++++++.+. +       
T Consensus        96 p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~  172 (302)
T 2xn4_A           96 RDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCL  172 (302)
T ss_dssp             SSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEEC
T ss_pred             CccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccc
Confidence            11111112222  2667777777653     5788898876543322  111111 2222 3556666554 2       


Q ss_pred             CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecC-----CcEEEEECCCCcEEEEeecCCCCCCceEE
Q 023822          182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME-----GHIHVLDSFRGTLLSTYNVKPVSRNSTLE  256 (276)
Q Consensus       182 ~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~  256 (276)
                      ..+.+||+.+.+=  .....+.........+.+  ++++++.|+.+     ..+.+||..+.+-...-... ........
T Consensus       173 ~~~~~yd~~~~~W--~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~r~~~~~  247 (302)
T 2xn4_A          173 STVECYNATTNEW--TYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMN-MCRRNAGV  247 (302)
T ss_dssp             CCEEEEETTTTEE--EEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCS-SCCBSCEE
T ss_pred             cEEEEEeCCCCcE--EECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCC-CccccCeE
Confidence            3588898876431  111111111111222222  67777888764     36899999877654332211 11111112


Q ss_pred             EEECCCCcEEEEecCCC
Q 023822          257 ASFSPEGMFVISGRVSP  273 (276)
Q Consensus       257 ~~~s~~g~~l~~~~~dg  273 (276)
                      +.  .++++++.|+.++
T Consensus       248 ~~--~~~~i~v~GG~~~  262 (302)
T 2xn4_A          248 CA--VNGLLYVVGGDDG  262 (302)
T ss_dssp             EE--ETTEEEEECCBCS
T ss_pred             EE--ECCEEEEECCcCC
Confidence            22  3678888888664

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=98.01  E-value=0.0021  Score=49.38  Aligned_cols=191  Identities=12%  Similarity=0.126  Sum_probs=95.7

Q ss_pred             CCCEEEEeecC-----CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCC--CCceEEEEccCCceeee-
Q 023822           45 SSSYLVTASDD-----ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW--DESLRLLSLHDNKYLRY-  116 (276)
Q Consensus        45 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~--d~~i~~~d~~~~~~~~~-  116 (276)
                      ++.+++.|+.+     ..+.+||..+.+-...-..........+...+++.++.++..+.  -..+.+||+.+.+-... 
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~  140 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA  140 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecC
Confidence            56677777754     35888998776533221111111111112226667777765211  13577888877643221 


Q ss_pred             -ecccCcceEEEEeccCCCEEEEeeCC-------CeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-C----
Q 023822          117 -FKGHHDRVVSLSLCSSKDCFISGSLD-------RTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-G----  181 (276)
Q Consensus       117 -~~~~~~~i~~~~~~~~~~~l~~~~~d-------~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d----  181 (276)
                       +....... +++. -++++++.|+.+       ..+.+||+.+.+-...-  ........+..-++++++.+. +    
T Consensus       141 ~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~  218 (302)
T 2xn4_A          141 PMNTRRSSV-GVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLV  218 (302)
T ss_dssp             CCSSCCBSC-EEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSB
T ss_pred             CCCCcccCc-eEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCCcc
Confidence             21111111 2222 266777777643       35889998876543322  111111122222556666654 2    


Q ss_pred             -CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCC-----cEEEEECCCCcEE
Q 023822          182 -GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG-----HIHVLDSFRGTLL  241 (276)
Q Consensus       182 -~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~  241 (276)
                       ..+.+||+.+.+=  ..+............+.  -++++++.|+.++     .+.+||..+.+-.
T Consensus       219 ~~~~~~yd~~~~~W--~~~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  280 (302)
T 2xn4_A          219 RKSVEVYDPTTNAW--RQVADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDKWT  280 (302)
T ss_dssp             CCCEEEEETTTTEE--EEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             cceEEEEeCCCCCE--eeCCCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence             4688999876431  11111111111112222  3677788887653     4899998877644

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.84  E-value=0.0012  Score=47.75  Aligned_cols=173  Identities=10%  Similarity=0.062  Sum_probs=94.7

Q ss_pred             CCCEEEEeecCCeEEEEEccCCee------eeeeee-eeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeee
Q 023822           45 SSSYLVTASDDESIRLYDVTAATC------LKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF  117 (276)
Q Consensus        45 ~~~~l~~~~~d~~i~iwd~~~~~~------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~  117 (276)
                      ....|+...+| +++.=....+..      ...+-. .-..+..++|+|++...++  .   +|.+.-.+..+.... .+
T Consensus         3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~---~G~Ly~~~~~t~~~~-~W   75 (236)
T 1tl2_A            3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--L---NDKIYKGTPPTHDND-NW   75 (236)
T ss_dssp             CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--E---TTEEEEESCCCSTTC-CH
T ss_pred             cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--e---CCeEEEECCCCCCcc-cc
Confidence            34556666666 555544333321      111111 0136779999998886666  4   787777666442221 11


Q ss_pred             cccCcc--------eEEEEeccCCCEEEEeeCCCeEEEEeccCceeeee------Eee---cCCCeeEecCCCcEEEEee
Q 023822          118 KGHHDR--------VVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL------LRV---QGRPAAAYDDQGLVFAVAF  180 (276)
Q Consensus       118 ~~~~~~--------i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~------~~~---~~~~~~~~~~~~~~l~~~~  180 (276)
                      .+....        ..++.|.|++.+.++  .||.|+-++-.+.....-      +..   ..+..+.+.|+|.+.++. 
T Consensus        76 ~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-  152 (236)
T 1tl2_A           76 MGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-  152 (236)
T ss_dssp             HHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-
T ss_pred             cccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-
Confidence            111222        478899999987777  569998887543221111      111   345689999999999999 


Q ss_pred             CCeEEEEecccCCCCCe--eeeeec-CCCCCceEEEECCCCcEEEEeecCCc
Q 023822          181 GGYIRMFDARKYEKGPF--DIFSVG-GDISDANVVKFSNDGRLMLLTTMEGH  229 (276)
Q Consensus       181 d~~i~~~d~~~~~~~~~--~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~  229 (276)
                      |+.++-....+......  ....+. ..-.....+.|.|+|.+.++.  +|.
T Consensus       153 dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~  202 (236)
T 1tl2_A          153 GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGK  202 (236)
T ss_dssp             TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTE
T ss_pred             CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCe
Confidence            88855433221111000  000111 122234446788888766555  663

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.77  E-value=0.00077  Score=48.66  Aligned_cols=142  Identities=12%  Similarity=0.021  Sum_probs=82.4

Q ss_pred             cceEEEEeccCCCEEEEeeCCCeEEEEeccCceee------eeE---eecCCCeeEecCCCcEEEEeeCCeEEEEecccC
Q 023822          122 DRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ------GLL---RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKY  192 (276)
Q Consensus       122 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~------~~~---~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~  192 (276)
                      ..+..++|+|++.+.++  .+|.++-.+..+....      ..+   --..-..+.|.|++.+.++ .||.|+-++..+.
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~  117 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQS  117 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCCS
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe-CCCEEEEeCCCcC
Confidence            36779999999986666  6787777665442211      111   1112368999999999999 7899988876443


Q ss_pred             CCCCee-e-eee-cCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEE-----EEeecCCCCCCceEEEEECCCCc
Q 023822          193 EKGPFD-I-FSV-GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL-----STYNVKPVSRNSTLEASFSPEGM  264 (276)
Q Consensus       193 ~~~~~~-~-~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----~~~~~~~~~~~~v~~~~~s~~g~  264 (276)
                      ...... . ..+ ...-..+..|.|.|+|.+.++.  |+.++-....++...     ...-.. ..-....-+.|.++|.
T Consensus       118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~-~g~~~yr~l~f~~~G~  194 (236)
T 1tl2_A          118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQ-GGWDTFKFLFFSSVGT  194 (236)
T ss_dssp             TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEES-SSGGGEEEEEECTTSC
T ss_pred             CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceecc-CCcceEEEEEECCCCc
Confidence            221110 0 011 1122467899999999866666  777544433322100     111100 1222344567889888


Q ss_pred             EEEEe
Q 023822          265 FVISG  269 (276)
Q Consensus       265 ~l~~~  269 (276)
                      +.++.
T Consensus       195 l~~v~  199 (236)
T 1tl2_A          195 LFGVQ  199 (236)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            77665

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.75  E-value=0.008  Score=46.25  Aligned_cols=189  Identities=8%  Similarity=0.090  Sum_probs=96.4

Q ss_pred             CCCEEEEeec----C-----CeEEEEEccCCeeeee--eeeeeeceEEEEEeccCCeEEEeccCC--CCCceEEEEccCC
Q 023822           45 SSSYLVTASD----D-----ESIRLYDVTAATCLKT--INSKKYGVDLVCFTSHPTTVIYSSKNG--WDESLRLLSLHDN  111 (276)
Q Consensus        45 ~~~~l~~~~~----d-----~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~~~--~d~~i~~~d~~~~  111 (276)
                      ++.+++.|+.    +     ..+.+||..+.+-...  +......-..+.  -+++.++.++..+  ....+.+||+.+.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~  147 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPERD  147 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEE--ETTEEEEECCEETTEECCCEEEEETTTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEE--ECCEEEEEcCCCCCcccccEEEECCCCC
Confidence            5667777765    2     3688899877653322  211111112222  2666667666421  0246888998776


Q ss_pred             ceee--eecccCcceEEEEeccCCCEEEEeeCC-----CeEEEEeccCceeeeeE--eecCC-CeeEecCCCcEEEEee-
Q 023822          112 KYLR--YFKGHHDRVVSLSLCSSKDCFISGSLD-----RTVLLWDQRAEKCQGLL--RVQGR-PAAAYDDQGLVFAVAF-  180 (276)
Q Consensus       112 ~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~--~~~~~-~~~~~~~~~~~l~~~~-  180 (276)
                      +-..  .+.........+.+  ++++++.|+.+     ..+.+||+.+.+-...-  ..... ..++.. ++++++.+. 
T Consensus       148 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~  224 (308)
T 1zgk_A          148 EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGY  224 (308)
T ss_dssp             EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCB
T ss_pred             eEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCC
Confidence            4322  12111111122222  66777777764     45889998876543322  11111 122222 566666654 


Q ss_pred             C-----CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecC-----CcEEEEECCCCcEEE
Q 023822          181 G-----GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME-----GHIHVLDSFRGTLLS  242 (276)
Q Consensus       181 d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~  242 (276)
                      +     ..+.+||+.+.+=  ..+..+.........+.  -++++++.|+.+     ..+.+||..+.+-..
T Consensus       225 ~~~~~~~~v~~yd~~~~~W--~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  292 (308)
T 1zgk_A          225 DGQDQLNSVERYDVETETW--TFVAPMKHRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTDTWSE  292 (308)
T ss_dssp             CSSSBCCCEEEEETTTTEE--EECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred             CCCCccceEEEEeCCCCcE--EECCCCCCCccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCCEEee
Confidence            3     5689999876431  11111111111122222  267777887754     358889987765543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.73  E-value=0.0088  Score=46.18  Aligned_cols=214  Identities=14%  Similarity=0.157  Sum_probs=105.1

Q ss_pred             EEEEeecCCeEEEEEccCCeeee-eeeeeeeceEEEEEeccCCeEEEecc----CCC----CCceEEEEccCCceee--e
Q 023822           48 YLVTASDDESIRLYDVTAATCLK-TINSKKYGVDLVCFTSHPTTVIYSSK----NGW----DESLRLLSLHDNKYLR--Y  116 (276)
Q Consensus        48 ~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~----~~~----d~~i~~~d~~~~~~~~--~  116 (276)
                      +++.|+  ..+.+||..+++-.. .+..............++..++.++.    .+.    ...+..||..+++-..  .
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   84 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP   84 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence            344555  569999998877432 11111122233334457777777773    110    1237788887765322  1


Q ss_pred             ecccCcceEEEEeccCCCEEEEeeCC--------CeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee--C---
Q 023822          117 FKGHHDRVVSLSLCSSKDCFISGSLD--------RTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF--G---  181 (276)
Q Consensus       117 ~~~~~~~i~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~--d---  181 (276)
                      +...... .+++. -++.+++.|+.+        ..+.+||..+.+-...-  ........+...++++++.+.  +   
T Consensus        85 ~p~~r~~-~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~  162 (315)
T 4asc_A           85 LPSPRCL-FGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRK  162 (315)
T ss_dssp             BSSCEES-CEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSC
T ss_pred             CCcchhc-eeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCc
Confidence            1111111 11222 266677777742        45889999876533221  111111222224555555554  1   


Q ss_pred             --CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCC-----cEEEEECCCCcEEEEeecCCCCCCce
Q 023822          182 --GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG-----HIHVLDSFRGTLLSTYNVKPVSRNST  254 (276)
Q Consensus       182 --~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~v  254 (276)
                        ..+.+||+.+.+=  .....+.........+.  -++++++.|+.++     .+.+||..+.+-...-.. +......
T Consensus       163 ~~~~~~~yd~~~~~W--~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~  237 (315)
T 4asc_A          163 CLNKMCVYDPKKFEW--KELAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAF-PQERSSL  237 (315)
T ss_dssp             BCCCEEEEETTTTEE--EECCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCC-SSCCBSC
T ss_pred             ccceEEEEeCCCCeE--EECCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCC-CCcccce
Confidence              4688999876431  00111111111112222  2667778887654     588999887755433221 1111222


Q ss_pred             EEEEECCCCcEEEEecCC
Q 023822          255 LEASFSPEGMFVISGRVS  272 (276)
Q Consensus       255 ~~~~~s~~g~~l~~~~~d  272 (276)
                      ..+.  -++++++.|+.+
T Consensus       238 ~~~~--~~~~l~v~GG~~  253 (315)
T 4asc_A          238 SLVS--LVGTLYAIGGFA  253 (315)
T ss_dssp             EEEE--ETTEEEEEEEEE
T ss_pred             eEEE--ECCEEEEECCcc
Confidence            2222  266777777754

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.72  E-value=0.00091  Score=52.12  Aligned_cols=191  Identities=7%  Similarity=-0.025  Sum_probs=103.8

Q ss_pred             CEEEEeecCCeEEEEEccCCeeeeeeeeee-eceEEEEEe--ccCCeEEEe--ccCCCCCceEEEEccCCceeeeecc--
Q 023822           47 SYLVTASDDESIRLYDVTAATCLKTINSKK-YGVDLVCFT--SHPTTVIYS--SKNGWDESLRLLSLHDNKYLRYFKG--  119 (276)
Q Consensus        47 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~--~~~~~l~~~--~~~~~d~~i~~~d~~~~~~~~~~~~--  119 (276)
                      ..++.++.||.|.-.|.++|+..-.++... .++....-.  +.+..++++  ..   ||.|..++..++.....+..  
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~---dG~l~a~~~~~G~~~~~~~~~~   87 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFG---DGNIYYFNAHQGLQKLPLSIRQ   87 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCST---TTEEEEEETTTEEEEEEEEHHH
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECC---CCEEEEEECCCCcEEeeecccc
Confidence            478889999999999999999888876541 122111100  112233333  34   99999999888754443321  


Q ss_pred             --cCcceEE---EEe-c----cCCCEEEEeeCCCeEEEEeccCceeeeeEeecCCC---------eeEe------cCCCc
Q 023822          120 --HHDRVVS---LSL-C----SSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP---------AAAY------DDQGL  174 (276)
Q Consensus       120 --~~~~i~~---~~~-~----~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---------~~~~------~~~~~  174 (276)
                        ...++..   ... .    ..+..+++++.+|++...|+++++.+..+......         |...      ..++.
T Consensus        88 lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~  167 (339)
T 2be1_A           88 LVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENM  167 (339)
T ss_dssp             HHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCE
T ss_pred             ceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCe
Confidence              1111111   000 0    14557889999999999999999998888433211         1111      11234


Q ss_pred             EEEEeeCCeEEEEecccCCCCCeeeeeecCCCCC--c-eEEEECCCCcEEEEeecCCcEEEEECCCCcEEE
Q 023822          175 VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISD--A-NVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS  242 (276)
Q Consensus       175 ~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~--i-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  242 (276)
                      +++...+..+.+.+ ++++...............  + ..-..+.++.+ +.++.||.|.-+|..+|+.+-
T Consensus       168 v~ig~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          168 IVIGKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             EEEecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence            55545566666666 3333211111111111000  0 00011234565 446788888888888887764

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.69  E-value=0.0041  Score=48.99  Aligned_cols=222  Identities=9%  Similarity=0.037  Sum_probs=103.4

Q ss_pred             CCCEEEEeec-CCeEEEEEccC--Ce--eeeeee-eeeeceEEEEEeccCCeEEEecc-C------CCCCceEEEEccCC
Q 023822           45 SSSYLVTASD-DESIRLYDVTA--AT--CLKTIN-SKKYGVDLVCFTSHPTTVIYSSK-N------GWDESLRLLSLHDN  111 (276)
Q Consensus        45 ~~~~l~~~~~-d~~i~iwd~~~--~~--~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-~------~~d~~i~~~d~~~~  111 (276)
                      ++.+++.|+. ...+.++|+.+  .+  .+..+. .....- +++. -+++.++.|+. .      ..-..+.+||+.+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQA-TSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSC-EEEE-ETTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccc-eEEE-ECCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            5666666664 35688899863  22  222222 111111 2222 25666666654 1      01246889998876


Q ss_pred             ceee--eecccCcceEEEEeccCCCEEEEeeCC---------------------------------------CeEEEEec
Q 023822          112 KYLR--YFKGHHDRVVSLSLCSSKDCFISGSLD---------------------------------------RTVLLWDQ  150 (276)
Q Consensus       112 ~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d---------------------------------------~~i~iwd~  150 (276)
                      +-..  .+......-.++.. .++++++.|+.+                                       ..+.+||.
T Consensus        97 ~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~  175 (357)
T 2uvk_A           97 SWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDP  175 (357)
T ss_dssp             EEEECSCCCSSCCSSEEEEE-ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEET
T ss_pred             cEEECCCCCCcccccceEEE-ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeC
Confidence            4322  11101111112222 477788888764                                       57899999


Q ss_pred             cCceeeeeEeec--C-C-CeeEecCCCcEEEEee-------CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCc
Q 023822          151 RAEKCQGLLRVQ--G-R-PAAAYDDQGLVFAVAF-------GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR  219 (276)
Q Consensus       151 ~~~~~~~~~~~~--~-~-~~~~~~~~~~~l~~~~-------d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  219 (276)
                      .+.+-...-...  . . ..++.. ++++++.+.       ...+..||+.........+..+..........+...+++
T Consensus       176 ~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~  254 (357)
T 2uvk_A          176 STQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDS  254 (357)
T ss_dssp             TTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTE
T ss_pred             CCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCE
Confidence            877544332111  1 1 223333 455555543       245777776221111111111111111112222334667


Q ss_pred             EEEEeecC----------------------CcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCC
Q 023822          220 LMLLTTME----------------------GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       220 ~l~~~~~d----------------------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  273 (276)
                      +++.|+.+                      ..+.+||+.+.+-...-... .....-.  +...++++++.|+.++
T Consensus       255 iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~--~~~~~~~i~v~GG~~~  327 (357)
T 2uvk_A          255 LIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELS-QGRAYGV--SLPWNNSLLIIGGETA  327 (357)
T ss_dssp             EEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECS-SCCBSSE--EEEETTEEEEEEEECG
T ss_pred             EEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCC-CCcccce--eEEeCCEEEEEeeeCC
Confidence            77777632                      25788998876543322211 1122222  2334778888888664

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.66  E-value=0.0037  Score=57.31  Aligned_cols=198  Identities=14%  Similarity=0.244  Sum_probs=121.0

Q ss_pred             EEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCC-ceeeeec
Q 023822           40 MDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN-KYLRYFK  118 (276)
Q Consensus        40 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~-~~~~~~~  118 (276)
                      .-.+|..+.+|.-. ..++.|||+++.+.+..+.... +|.--.|-.. +.|+..+    +..|.-|++... .+.+.+.
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-~VvfWkWis~-~~l~lVT----~~aVyHW~~~~~s~P~k~fd  143 (1630)
T 1xi4_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-NTVALVT----DNAVYHWSMEGESQPVKMFD  143 (1630)
T ss_pred             hccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-CceEEEecCC-CeeEEEc----CCeEEEeccCCCCccHHHHh
Confidence            34567777777654 6789999999887777666544 5777777644 4444444    788999999743 4444554


Q ss_pred             cc----CcceEEEEeccCCCEEEEee-------CCCeEEEEeccCceeeeeEeecCCCe--eEe---cCCCcEEEEee--
Q 023822          119 GH----HDRVVSLSLCSSKDCFISGS-------LDRTVLLWDQRAEKCQGLLRVQGRPA--AAY---DDQGLVFAVAF--  180 (276)
Q Consensus       119 ~~----~~~i~~~~~~~~~~~l~~~~-------~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~---~~~~~~l~~~~--  180 (276)
                      .|    ...|..-..+++.++++..+       ..|.+.+|..+.+... .+.++....  +..   .+...+++.+.  
T Consensus       144 R~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ-~iegha~~F~~~~~~~~~~~~~l~~f~~~~  222 (1630)
T 1xi4_A          144 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-PIEGHAASFAQFKMEGNAEESTLFCFAVRG  222 (1630)
T ss_pred             cchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccch-hhhHhHhhhheeccCCCCCCceEEEEEEec
Confidence            44    34677777788888776443       2477888887654322 121111111  111   11224555444  


Q ss_pred             --CCeEEEEecccC--CCCCee-----ee-eecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEee
Q 023822          181 --GGYIRMFDARKY--EKGPFD-----IF-SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  245 (276)
Q Consensus       181 --d~~i~~~d~~~~--~~~~~~-----~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  245 (276)
                        .+.+++.++...  ..+++.     ++ .......-..++..++.-..++.-+.-|.|++||+.++.++..-+
T Consensus       223 ~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~r  297 (1630)
T 1xi4_A          223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR  297 (1630)
T ss_pred             CCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcc
Confidence              378999998653  111111     11 111112234567777777778888899999999999998876544

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.65  E-value=0.026  Score=49.37  Aligned_cols=221  Identities=9%  Similarity=0.054  Sum_probs=124.8

Q ss_pred             CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeee-eeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCc
Q 023822           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTI-NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK  112 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~  112 (276)
                      ...|.++.-..+|. |-.|..+| +..||-.+.+..... ......|.++....++ .|.+++.   + -+..||..+.+
T Consensus        21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~---~-Gl~~yd~~~~~   93 (758)
T 3ott_A           21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNT-YLYMGTD---N-GILVYNYRADR   93 (758)
T ss_dssp             CCCEEEEEECTTSC-EEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTT-EEEEEET---T-EEEEEETTTTE
T ss_pred             cceEEEEEECCCCC-EEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCC-cEEEEeC---C-CeEEEeCCCCE
Confidence            46799999888774 55566777 666774322211100 1123457777666554 5666663   4 47889987764


Q ss_pred             eeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE------eecCCCeeEecCCCcEEEEeeCCeEEE
Q 023822          113 YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL------RVQGRPAAAYDDQGLVFAVAFGGYIRM  186 (276)
Q Consensus       113 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~d~~i~~  186 (276)
                      ...........|.++.. .++ .|..++.+ .|..||..+.+.....      ....+.++....++.+.++.. +-+..
T Consensus        94 f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-~Gl~~  169 (758)
T 3ott_A           94 YEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGTY-NGLCR  169 (758)
T ss_dssp             ECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEEET-TEEEE
T ss_pred             EECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEeC-CCHhh
Confidence            33211112335666654 355 45556655 6888998765543221      122344666777888777654 45778


Q ss_pred             EecccCCCCCeeeeeecC----CCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCC
Q 023822          187 FDARKYEKGPFDIFSVGG----DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  262 (276)
Q Consensus       187 ~d~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~  262 (276)
                      |+..+.+.   .......    ....|.++...+++..|..|+. +-+..+|..+++......   .....|.++...++
T Consensus       170 ~~~~~~~~---~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~---l~~~~i~~i~~d~~  242 (758)
T 3ott_A          170 YIPSNGKF---EGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEA---FHNNSIKSLALDGN  242 (758)
T ss_dssp             EETTTTEE---EEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEE---EEEEEEEEEEECTT
T ss_pred             CccCCCce---EEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccC---CCCCeEEEEEEcCC
Confidence            88765321   1111111    1224778887777765555654 458889987765432221   12346888888888


Q ss_pred             CcEEEEecCCC
Q 023822          263 GMFVISGRVSP  273 (276)
Q Consensus       263 g~~l~~~~~dg  273 (276)
                      |.+.+.. .+|
T Consensus       243 g~lWigT-~~G  252 (758)
T 3ott_A          243 GDLLAGT-DNG  252 (758)
T ss_dssp             CCEEEEE-TTE
T ss_pred             CCEEEEe-CCc
Confidence            7765443 344

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.65  E-value=0.011  Score=48.33  Aligned_cols=104  Identities=11%  Similarity=0.195  Sum_probs=58.5

Q ss_pred             cceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEee----------cCCCeeEecCC----CcEEEEeeC------
Q 023822          122 DRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV----------QGRPAAAYDDQ----GLVFAVAFG------  181 (276)
Q Consensus       122 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----------~~~~~~~~~~~----~~~l~~~~d------  181 (276)
                      ...+.|+|.|+|+++++-...+.|++++...++.......          .+...++++|+    +.++++.+.      
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            3467999999998766654445798888654443222211          12237899994    554444431      


Q ss_pred             -------CeEEEEecccCCC---CCeeeee-ec-CCCCCceEEEECCCCcEEEEee
Q 023822          182 -------GYIRMFDARKYEK---GPFDIFS-VG-GDISDANVVKFSNDGRLMLLTT  225 (276)
Q Consensus       182 -------~~i~~~d~~~~~~---~~~~~~~-~~-~~~~~i~~~~~~~~~~~l~~~~  225 (276)
                             ..|..|+......   ....++. +. ........++|.|+|.++++.+
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                   3566666543211   0111221 22 1123568899999998766644

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=97.59  E-value=0.03  Score=48.47  Aligned_cols=226  Identities=10%  Similarity=0.051  Sum_probs=115.3

Q ss_pred             CCCCEEEEeecC----CeEEEEEccCCeeeeee-e-----eeee-ceEEEEEec-cCCeEEEeccCCC---CCceEEEEc
Q 023822           44 KSSSYLVTASDD----ESIRLYDVTAATCLKTI-N-----SKKY-GVDLVCFTS-HPTTVIYSSKNGW---DESLRLLSL  108 (276)
Q Consensus        44 ~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~-~-----~~~~-~v~~~~~~~-~~~~l~~~~~~~~---d~~i~~~d~  108 (276)
                      .++..++.|+.+    ..+.+||..+++....- .     .... .-.+++..+ +++.++.|+..+.   -..+.+||+
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            456677777753    46888998776533222 1     1111 122333333 6777777775321   246889998


Q ss_pred             cCCceee--eecccCcceEEEEeccCCCEEEEeeCCC--eEEEEeccCceeeeeEe-------ecCCCeeEecCC-CcEE
Q 023822          109 HDNKYLR--YFKGHHDRVVSLSLCSSKDCFISGSLDR--TVLLWDQRAEKCQGLLR-------VQGRPAAAYDDQ-GLVF  176 (276)
Q Consensus       109 ~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~-------~~~~~~~~~~~~-~~~l  176 (276)
                      .+.+-..  .+...... .+++...++++++.|+.++  .+.+||..+.+-...-.       ......+.+..+ ++++
T Consensus       476 ~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy  554 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI  554 (695)
T ss_dssp             TTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred             CCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence            8754322  22211111 2233324778888888755  68999998875433221       111223555555 6666


Q ss_pred             EEee---C-----CeEEEEecccCCC-CC--ee-eeeecCCCCCceEEEECCCCcEEEEeecC--------CcEEEEECC
Q 023822          177 AVAF---G-----GYIRMFDARKYEK-GP--FD-IFSVGGDISDANVVKFSNDGRLMLLTTME--------GHIHVLDSF  236 (276)
Q Consensus       177 ~~~~---d-----~~i~~~d~~~~~~-~~--~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~i~d~~  236 (276)
                      +.|.   +     ..+.+||+.+..- ..  .. +.........-.+++...++++++.|+.+        ..|.+||..
T Consensus       555 v~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~  634 (695)
T 2zwa_A          555 ILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPL  634 (695)
T ss_dssp             EECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred             EECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence            6664   2     4688999887541 00  01 11111111111233333447777887743        459999998


Q ss_pred             CCcEEEEeecCCC------CCCceEEEEECCCCcEEEEecC
Q 023822          237 RGTLLSTYNVKPV------SRNSTLEASFSPEGMFVISGRV  271 (276)
Q Consensus       237 ~~~~~~~~~~~~~------~~~~v~~~~~s~~g~~l~~~~~  271 (276)
                      +.+-. .......      ....-.+....++|++++.||.
T Consensus       635 t~~W~-~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg  674 (695)
T 2zwa_A          635 SETLT-SIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGG  674 (695)
T ss_dssp             TTEEE-ECCCCHHHHHHSCCCCSSCEEECC---CEEEECCE
T ss_pred             CCeEE-EeeccccccCCCCccceeeeEEEeCCCEEEEEeCC
Confidence            87654 2221000      0000123444566688888874

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.58  E-value=0.0044  Score=48.88  Aligned_cols=141  Identities=13%  Similarity=0.109  Sum_probs=78.0

Q ss_pred             cceEEEEeccCCCEEEEeeCCCeEEEEeccCce-eeeeEe-----ecCCCeeEecCC----CcEEEEeeC--------Ce
Q 023822          122 DRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK-CQGLLR-----VQGRPAAAYDDQ----GLVFAVAFG--------GY  183 (276)
Q Consensus       122 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~-----~~~~~~~~~~~~----~~~l~~~~d--------~~  183 (276)
                      .....|+|.|++++ +++..+|.|+++|. .++ .+..+.     ......++++|+    +.++++...        ..
T Consensus        29 ~~P~~ia~~pdG~l-~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           29 EVPWSIAPLGGGRY-LVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             SCEEEEEEEETTEE-EEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCCeEEEEcCCCeE-EEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            44688999999984 44566799999973 443 111111     123457899997    555554432        67


Q ss_pred             EEEEecccCCCC---Ceeeee-ec-CCCCCceEEEECCCCcEEEEeec-------------CCcEEEEECCCCcE-----
Q 023822          184 IRMFDARKYEKG---PFDIFS-VG-GDISDANVVKFSNDGRLMLLTTM-------------EGHIHVLDSFRGTL-----  240 (276)
Q Consensus       184 i~~~d~~~~~~~---~~~~~~-~~-~~~~~i~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~~-----  240 (276)
                      |..|+.......   ...+.. +. ........++|.|+|.++++.+.             .|.|.-++.. ++.     
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p~~np  185 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPPADNP  185 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCCTTSS
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCCCCCC
Confidence            777876643110   001111 21 11224577999999986666432             2456666543 321     


Q ss_pred             ---EEEeecCCCCCCceEEEEECC-CCcEEEE
Q 023822          241 ---LSTYNVKPVSRNSTLEASFSP-EGMFVIS  268 (276)
Q Consensus       241 ---~~~~~~~~~~~~~v~~~~~s~-~g~~l~~  268 (276)
                         ...+..  ++ .....++|+| +|++.++
T Consensus       186 f~~~~i~a~--G~-rnp~Gla~d~~~g~l~v~  214 (354)
T 3a9g_A          186 FPNSPIWSY--GH-RNPQGIDWHRASGVMVAT  214 (354)
T ss_dssp             STTCCEEEE--CC-SCCCEEEECTTTCCEEEE
T ss_pred             CCCCcEEEE--cc-CCcceEEEeCCCCCEEEE
Confidence               111211  23 2346799999 6665554

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.53  E-value=0.026  Score=46.14  Aligned_cols=107  Identities=7%  Similarity=0.042  Sum_probs=62.0

Q ss_pred             CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeee--eeeee------eeeceEEEEEecc---CCeEEEeccC-----
Q 023822           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL--KTINS------KKYGVDLVCFTSH---PTTVIYSSKN-----   97 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~------~~~~v~~~~~~~~---~~~l~~~~~~-----   97 (276)
                      -.....|+|.|+|+++++-...+.|++++..+++..  ..+..      .......++|+|+   +..|.++...     
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            345679999999987776544457888876555432  22211      2345779999996   6666655421     


Q ss_pred             -CC----CCceEEEEccCC-------ceee-eecc-cCcceEEEEeccCCCEEEEee
Q 023822           98 -GW----DESLRLLSLHDN-------KYLR-YFKG-HHDRVVSLSLCSSKDCFISGS  140 (276)
Q Consensus        98 -~~----d~~i~~~d~~~~-------~~~~-~~~~-~~~~i~~~~~~~~~~~l~~~~  140 (276)
                       +.    ...|.-++....       +.+. .+.. .......|+|.|||.++++.+
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence             00    134555655432       1111 1211 112368899999999766644

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.52  E-value=0.0048  Score=48.62  Aligned_cols=100  Identities=13%  Similarity=0.134  Sum_probs=58.6

Q ss_pred             cceEEEEeccCCCEEEEeeCCCeEEEEeccCceee--eeEe-----ecCCCeeEecCC----CcEEEEee-C-----CeE
Q 023822          122 DRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ--GLLR-----VQGRPAAAYDDQ----GLVFAVAF-G-----GYI  184 (276)
Q Consensus       122 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~-----~~~~~~~~~~~~----~~~l~~~~-d-----~~i  184 (276)
                      .....++|.|++++++ +..++.|++++  .++..  ..+.     ......++++|+    +.++++.. .     +.|
T Consensus        31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            3457899999998554 56679999998  33321  1111     123457899998    45444444 2     678


Q ss_pred             EEEecccCCCC-Ceeeee-ec---CCCCCceEEEECCCCcEEEEe
Q 023822          185 RMFDARKYEKG-PFDIFS-VG---GDISDANVVKFSNDGRLMLLT  224 (276)
Q Consensus       185 ~~~d~~~~~~~-~~~~~~-~~---~~~~~i~~~~~~~~~~~l~~~  224 (276)
                      ..|+....... ...+.. +.   ........++|.|+|.++++.
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~  152 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT  152 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence            88887642110 011111 22   112234689999999766654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.48  E-value=0.02  Score=43.93  Aligned_cols=197  Identities=8%  Similarity=0.070  Sum_probs=107.1

Q ss_pred             CCCCEEEEee--cCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCC-----------CCCceEEEEccC
Q 023822           44 KSSSYLVTAS--DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG-----------WDESLRLLSLHD  110 (276)
Q Consensus        44 ~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-----------~d~~i~~~d~~~  110 (276)
                      +++..++...  .++.|...+.+ |.....+....    +--+++++..|+.+....           ....|+..++..
T Consensus        23 ~~g~~iy~~n~~d~~~ly~~~~d-g~~~~~l~~~~----~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg   97 (302)
T 3s25_A           23 ESDGEVFFSNTNDNGRLYAMNID-GSNIHKLSNDT----AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG   97 (302)
T ss_dssp             EETTEEEEEEGGGTTEEEEEETT-SCSCEEEEEEE----EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred             EeCCEEEEEeCCCCceEEEEcCC-CCCCEEccCCc----eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence            4566666553  35667766654 33334443322    245578999998886521           024677777766


Q ss_pred             CceeeeecccCcceEEEEeccCCCEEEEee----CCCeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEee--CCeE
Q 023822          111 NKYLRYFKGHHDRVVSLSLCSSKDCFISGS----LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF--GGYI  184 (276)
Q Consensus       111 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--d~~i  184 (276)
                      .+... +....    ...|++++++|+-..    .+..|...++..... ..+.....  ..++++++.|.-..  ..+|
T Consensus        98 ~~~~~-l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~-~~lt~~~~--~~~~~~g~~iy~t~~g~~~I  169 (302)
T 3s25_A           98 HGSTV-LDPDP----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK-KKIKNHYL--FTCNTSDRYFYYNNPKNGQL  169 (302)
T ss_dssp             CCCEE-EECSC----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCC-EEEESSCC--CCSEEETTEEEEECTTTCCE
T ss_pred             CcceE-eecCC----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCe-EEEeCCCc--eEeeEECCEEEEEeCCCceE
Confidence            65332 22111    236778888877665    234566666664433 33322222  45677777666555  4778


Q ss_pred             EEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecC--CcEEEEECCCCcEEEEeecCCCCCCceEEEEECCC
Q 023822          185 RMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME--GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  262 (276)
Q Consensus       185 ~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~  262 (276)
                      .+.++......   .. ..+   .. ...++|++.+|+.....  ..|..-++.... ...+.     ...+  ..|+|+
T Consensus       170 y~~~l~g~~~~---~l-~~~---~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt-----~~~~--~~~~~~  233 (302)
T 3s25_A          170 YRYDTASQSEA---LF-YDC---NC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLT-----EANI--EHYNVY  233 (302)
T ss_dssp             EEEETTTTEEE---EE-ECS---CE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECS-----CSCE--EEEEEE
T ss_pred             EEEECCCCCEE---EE-eCC---Cc-cceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEe-----CCCc--ceEEEC
Confidence            88777654321   11 221   12 23466988888876543  356666665444 33333     1122  236666


Q ss_pred             CcEEEEe
Q 023822          263 GMFVISG  269 (276)
Q Consensus       263 g~~l~~~  269 (276)
                      +++|+.+
T Consensus       234 g~~Iy~~  240 (302)
T 3s25_A          234 GSLIFYQ  240 (302)
T ss_dssp             TTEEEEE
T ss_pred             CCEEEEE
Confidence            7666654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.45  E-value=0.067  Score=49.04  Aligned_cols=164  Identities=10%  Similarity=0.174  Sum_probs=89.8

Q ss_pred             ceEEEEccCCceeeeecc-cCcceEEEE---eccC-CCEEEEee----------CCCeEEEEeccCceeeeeEeec--CC
Q 023822          102 SLRLLSLHDNKYLRYFKG-HHDRVVSLS---LCSS-KDCFISGS----------LDRTVLLWDQRAEKCQGLLRVQ--GR  164 (276)
Q Consensus       102 ~i~~~d~~~~~~~~~~~~-~~~~i~~~~---~~~~-~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~--~~  164 (276)
                      .|++.|..+.+.+..+.- ....+.+++   |..+ ..+|+.|+          ..|.|++|++...+. +.++..  ..
T Consensus       808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL-~lv~~~~v~g  886 (1158)
T 3ei3_A          808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKL-QTVAEKEVKG  886 (1158)
T ss_dssp             EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEE-EEEEEEEESS
T ss_pred             EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEE-EEEEEEEcCC
Confidence            467777776666554431 223344444   3333 35788776          347899999975433 333221  12


Q ss_pred             CeeEecC-CCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEE--ECCCCcEE
Q 023822          165 PAAAYDD-QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL--DSFRGTLL  241 (276)
Q Consensus       165 ~~~~~~~-~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~--d~~~~~~~  241 (276)
                      ...++.+ +| .|+++-...|++|++...+.  .. ...... ..+..+.....+.++++|..-..|.++  +...++..
T Consensus       887 ~v~al~~~~g-~Lla~ig~~l~vy~l~~~~~--L~-~~~~~~-~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~  961 (1158)
T 3ei3_A          887 AVYSMVEFNG-KLLASINSTVRLYEWTTEKE--LR-TECNHY-NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFE  961 (1158)
T ss_dssp             CEEEEEEETT-EEEEEETTEEEEEEECTTSC--EE-EEEEEC-CCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEE
T ss_pred             cCEEEeeeCC-EEEEEcCCEEEEEECCCCce--EE-EEeecc-ccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEE
Confidence            2333333 34 56666689999999976432  11 111111 123333343457789999877777665  44444333


Q ss_pred             EEeecCCCCCCceEEEEECCCCcEEEEecCCCC
Q 023822          242 STYNVKPVSRNSTLEASFSPEGMFVISGRVSPF  274 (276)
Q Consensus       242 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~  274 (276)
                       .+... .....++++.|-.++ .++.+..+|.
T Consensus       962 -~~a~D-~~~~~vta~~~ld~~-t~l~aD~~gN  991 (1158)
T 3ei3_A          962 -EIARD-FNPNWMSAVEILDDD-NFLGAENAFN  991 (1158)
T ss_dssp             -EEEEC-CSCBCEEEEEEEETT-EEEEEETTSE
T ss_pred             -EEEee-cccccEEEEEEEccC-cEEEEcCCCc
Confidence             33322 356778888887655 4555665553

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.40  E-value=0.03  Score=43.84  Aligned_cols=144  Identities=17%  Similarity=0.153  Sum_probs=81.9

Q ss_pred             CcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe--------ecCCCeeEecCC----CcEEEEe---eCCeEE
Q 023822          121 HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR--------VQGRPAAAYDDQ----GLVFAVA---FGGYIR  185 (276)
Q Consensus       121 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--------~~~~~~~~~~~~----~~~l~~~---~d~~i~  185 (276)
                      -...+.|+|.|+++++++--..|.|++++...++......        ......++++|+    +.++++-   .++.|.
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~  110 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV  110 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence            3456899999999877666558999999866554322111        223457999995    4444432   246677


Q ss_pred             EEecccCC-----C-CCeeee-eec-CCCCCceEEEECCCCcEEEEeec-------------CCcEEEEECCCCcE----
Q 023822          186 MFDARKYE-----K-GPFDIF-SVG-GDISDANVVKFSNDGRLMLLTTM-------------EGHIHVLDSFRGTL----  240 (276)
Q Consensus       186 ~~d~~~~~-----~-~~~~~~-~~~-~~~~~i~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~~----  240 (276)
                      -|......     . ....++ .+. ........++|.|+|.++++.+.             .|.|.-.+.. ++.    
T Consensus       111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d-G~ip~~n  189 (347)
T 3das_A          111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD-GEPAPGN  189 (347)
T ss_dssp             EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT-SSBCTTC
T ss_pred             EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC-CCccCCC
Confidence            77665421     1 111122 122 12224567999999987666432             3455555543 221    


Q ss_pred             ----EEEeecCCCCCCceEEEEECCCCcEEEE
Q 023822          241 ----LSTYNVKPVSRNSTLEASFSPEGMFVIS  268 (276)
Q Consensus       241 ----~~~~~~~~~~~~~v~~~~~s~~g~~l~~  268 (276)
                          ...+..  ++. ....++|+|+|.+.++
T Consensus       190 Pf~~~~i~a~--G~R-Np~Gla~dp~G~L~~~  218 (347)
T 3das_A          190 PFPGSPVYSY--GHR-NVQGLAWDDKQRLFAS  218 (347)
T ss_dssp             SSTTCCEEEB--CCS-BCCEEEECTTCCEEEE
T ss_pred             CCCCCeEEee--CCC-CcceEEECCCCCEEEE
Confidence                112221  343 3457999999876654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.33  E-value=0.033  Score=42.87  Aligned_cols=192  Identities=10%  Similarity=0.050  Sum_probs=95.9

Q ss_pred             cCCCCEEEEeec----C-------CeEEEEEccCCeeeee--eeeeeeceEEEEEeccCCeEEEeccC-----CCCCceE
Q 023822           43 HKSSSYLVTASD----D-------ESIRLYDVTAATCLKT--INSKKYGVDLVCFTSHPTTVIYSSKN-----GWDESLR  104 (276)
Q Consensus        43 ~~~~~~l~~~~~----d-------~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~~-----~~d~~i~  104 (276)
                      ..++..++.|+.    +       ..+.+||..+.+-...  +......- .++. -+++.++.++..     .....+.
T Consensus        43 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~  120 (315)
T 4asc_A           43 TKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLF-GLGE-ALNSIYVVGGREIKDGERCLDSVM  120 (315)
T ss_dssp             CTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESC-EEEE-ETTEEEEECCEESSTTCCBCCCEE
T ss_pred             EECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhce-eEEE-ECCEEEEEeCCcCCCCCcccceEE
Confidence            346777777773    1       1277888877653221  21111111 1222 256666666631     1235688


Q ss_pred             EEEccCCceee--eecccCcceEEEEeccCCCEEEEeeC-C-----CeEEEEeccCceeeeeE--eecCCC-eeEecCCC
Q 023822          105 LLSLHDNKYLR--YFKGHHDRVVSLSLCSSKDCFISGSL-D-----RTVLLWDQRAEKCQGLL--RVQGRP-AAAYDDQG  173 (276)
Q Consensus       105 ~~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~-d-----~~i~iwd~~~~~~~~~~--~~~~~~-~~~~~~~~  173 (276)
                      +||+.+.+-..  .+....... +++ ..++++++.|+. +     ..+.+||+.+.+-...-  ...... .++.. ++
T Consensus       121 ~~d~~~~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~  197 (315)
T 4asc_A          121 CYDRLSFKWGESDPLPYVVYGH-TVL-SHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH-DG  197 (315)
T ss_dssp             EEETTTTEEEECCCCSSCCBSC-EEE-EETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TT
T ss_pred             EECCCCCcEeECCCCCCcccce-eEE-EECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE-CC
Confidence            99988764322  121111111 222 236677777776 2     46899998876543322  111111 22222 55


Q ss_pred             cEEEEee-C-----CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecC--------------CcEEEE
Q 023822          174 LVFAVAF-G-----GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME--------------GHIHVL  233 (276)
Q Consensus       174 ~~l~~~~-d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------------g~i~i~  233 (276)
                      ++++.+. +     ..+.+||+.+.+=  ..+............+.+  ++++++.|+.+              ..+.+|
T Consensus       198 ~iyv~GG~~~~~~~~~~~~yd~~~~~W--~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~y  273 (315)
T 4asc_A          198 RIIVAAGVTDTGLTSSAEVYSITDNKW--APFEAFPQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRY  273 (315)
T ss_dssp             EEEEEEEECSSSEEEEEEEEETTTTEE--EEECCCSSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEE
T ss_pred             EEEEEeccCCCCccceEEEEECCCCeE--EECCCCCCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEe
Confidence            5555554 3     2588888876421  111111111111222222  56777777753              247789


Q ss_pred             ECCCCcEEEE
Q 023822          234 DSFRGTLLST  243 (276)
Q Consensus       234 d~~~~~~~~~  243 (276)
                      |+.+.+-...
T Consensus       274 d~~~~~W~~~  283 (315)
T 4asc_A          274 NEEEKKWEGV  283 (315)
T ss_dssp             ETTTTEEEEE
T ss_pred             cCCCChhhhh
Confidence            9887765444

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.25  E-value=0.041  Score=42.43  Aligned_cols=214  Identities=12%  Similarity=0.132  Sum_probs=103.5

Q ss_pred             EEEEeecCCeEEEEEccCCeeeee-eeeeeeceEEEEEeccCCeEEEeccC----C----CCCceEEEEccCCceee--e
Q 023822           48 YLVTASDDESIRLYDVTAATCLKT-INSKKYGVDLVCFTSHPTTVIYSSKN----G----WDESLRLLSLHDNKYLR--Y  116 (276)
Q Consensus        48 ~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~~----~----~d~~i~~~d~~~~~~~~--~  116 (276)
                      +++.|+.  .+..||..+.+-... +..............++..++.|+..    +    ....+..||..+.+-..  .
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   95 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP   95 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred             hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence            4455543  488999887764431 11111122233334567777777731    0    01127788887664322  1


Q ss_pred             ecccCcceEEEEeccCCCEEEEeeCC-------CeEEEEeccCceeeeeEeec--C-CCeeEecCCCcEEEEee--C---
Q 023822          117 FKGHHDRVVSLSLCSSKDCFISGSLD-------RTVLLWDQRAEKCQGLLRVQ--G-RPAAAYDDQGLVFAVAF--G---  181 (276)
Q Consensus       117 ~~~~~~~i~~~~~~~~~~~l~~~~~d-------~~i~iwd~~~~~~~~~~~~~--~-~~~~~~~~~~~~l~~~~--d---  181 (276)
                      +...........+  ++++++.|+.+       ..+.+||+.+.+-...-...  . ...++. .++++++.+.  +   
T Consensus        96 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~  172 (318)
T 2woz_A           96 LPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKK  172 (318)
T ss_dssp             BSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSC
T ss_pred             CCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCC
Confidence            1111111122222  66777777754       35888998876543321111  1 112222 4566665554  1   


Q ss_pred             --CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecC-----CcEEEEECCCCcEEEEeecCCCCCCce
Q 023822          182 --GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME-----GHIHVLDSFRGTLLSTYNVKPVSRNST  254 (276)
Q Consensus       182 --~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v  254 (276)
                        ..+.+||+.+.+=  ...............+.  -++++++.|+.+     ..+.+||..+.+-...-.. +......
T Consensus       173 ~~~~~~~yd~~~~~W--~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~  247 (318)
T 2woz_A          173 CTNRVFIYNPKKGDW--KDLAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEF-PQERSSI  247 (318)
T ss_dssp             BCCCEEEEETTTTEE--EEECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCC-SSCCBSC
T ss_pred             ccceEEEEcCCCCEE--EECCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCC-CCcccce
Confidence              4588999876431  11111111111112222  256777777643     3577899887764432221 1111111


Q ss_pred             EEEEECCCCcEEEEecCCC
Q 023822          255 LEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       255 ~~~~~s~~g~~l~~~~~dg  273 (276)
                      ..+  ..++++++.|+.++
T Consensus       248 ~~~--~~~~~i~v~GG~~~  264 (318)
T 2woz_A          248 SLV--SLAGSLYAIGGFAM  264 (318)
T ss_dssp             EEE--EETTEEEEECCBCC
T ss_pred             EEE--EECCEEEEECCeec
Confidence            222  23677888887654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.19  E-value=0.036  Score=43.64  Aligned_cols=141  Identities=9%  Similarity=0.091  Sum_probs=76.2

Q ss_pred             ceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE---e------ecCCCeeEecCC----CcEEEEeeC--------
Q 023822          123 RVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL---R------VQGRPAAAYDDQ----GLVFAVAFG--------  181 (276)
Q Consensus       123 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~------~~~~~~~~~~~~----~~~l~~~~d--------  181 (276)
                      ....|+|.|+++.|+++...|.|++++.. +.....+   .      ......++++|+    +.++++...        
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            45789999999834455678999999854 3221111   0      112347899995    555544331        


Q ss_pred             CeEEEEecccCCCC--Ce-eeee-ec---CCCCCceEEEECCCCcEEEEeec-------------CCcEEEEECCCCc--
Q 023822          182 GYIRMFDARKYEKG--PF-DIFS-VG---GDISDANVVKFSNDGRLMLLTTM-------------EGHIHVLDSFRGT--  239 (276)
Q Consensus       182 ~~i~~~d~~~~~~~--~~-~~~~-~~---~~~~~i~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~--  239 (276)
                      ..|..|++......  .. .+.. +.   ........++|.|+|.++++.+.             .|.|.-++.. ++  
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d-G~~p  176 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ-GEIP  176 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETT-SCCC
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCC-CCCC
Confidence            25666666432110  01 1111 11   11123467999999976555433             2467667754 32  


Q ss_pred             -----------EEEEeecCCCCCCceEEEEECC-CCcEEEE
Q 023822          240 -----------LLSTYNVKPVSRNSTLEASFSP-EGMFVIS  268 (276)
Q Consensus       240 -----------~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~  268 (276)
                                 ....+..  ++ .....++|+| +|++.++
T Consensus       177 ~~npf~~~~~~~~~i~a~--G~-rnp~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          177 DDNPFIKESGVRAEIWSY--GI-RNPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             TTCTTTTSTTSCTTEEEE--CC-SEEEEEEEETTTTEEEEE
T ss_pred             CCCCCcCCCCCCccEEEE--cC-cCccceEEECCCCCEEEE
Confidence                       1122221  23 3467899999 6665543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.12  E-value=0.064  Score=42.07  Aligned_cols=196  Identities=8%  Similarity=-0.027  Sum_probs=94.2

Q ss_pred             CCCEEEEeec-C---------CeEEEEEccCCeeeeeeeee-eeceEEEEEeccCCeEEEeccCC---------------
Q 023822           45 SSSYLVTASD-D---------ESIRLYDVTAATCLKTINSK-KYGVDLVCFTSHPTTVIYSSKNG---------------   98 (276)
Q Consensus        45 ~~~~l~~~~~-d---------~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~---------------   98 (276)
                      ++.+++.|+. +         ..+.+||+.+.+-...-... .......+...+++.++.++..+               
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~  144 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGK  144 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCC
Confidence            5667777765 2         46889998876533221111 11111212224677777776521               


Q ss_pred             ---------------------CCCceEEEEccCCceee--eecccCcceEEEEeccCCCEEEEeeC------CCeEEEEe
Q 023822           99 ---------------------WDESLRLLSLHDNKYLR--YFKGHHDRVVSLSLCSSKDCFISGSL------DRTVLLWD  149 (276)
Q Consensus        99 ---------------------~d~~i~~~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~------d~~i~iwd  149 (276)
                                           ....+.+||+.+.+-..  .+......-.+++. -++++++.|+.      ...+..||
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d  223 (357)
T 2uvk_A          145 DSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELD  223 (357)
T ss_dssp             CHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEE
T ss_pred             cccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEE
Confidence                                 12578899988764322  22211111022222 25667777664      23577787


Q ss_pred             c--cCceeeeeEee--cC--CCeeEecCCCcEEEEee-C----------------------CeEEEEecccCCCCCeeee
Q 023822          150 Q--RAEKCQGLLRV--QG--RPAAAYDDQGLVFAVAF-G----------------------GYIRMFDARKYEKGPFDIF  200 (276)
Q Consensus       150 ~--~~~~~~~~~~~--~~--~~~~~~~~~~~~l~~~~-d----------------------~~i~~~d~~~~~~~~~~~~  200 (276)
                      +  .+.+-...-..  ..  ....+...++++++.+. +                      ..+.+||+.+.+=  ..+.
T Consensus       224 ~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W--~~~~  301 (357)
T 2uvk_A          224 FTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKW--DKSG  301 (357)
T ss_dssp             CC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---C--EEEE
T ss_pred             ecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCce--eeCC
Confidence            6  44332221111  11  11223333555655554 1                      2577888876431  1122


Q ss_pred             eecCCCCCceEEEECCCCcEEEEeecCC------cEEEEECCCCcEEEEee
Q 023822          201 SVGGDISDANVVKFSNDGRLMLLTTMEG------HIHVLDSFRGTLLSTYN  245 (276)
Q Consensus       201 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~  245 (276)
                      .+......-.  +...++++++.|+.++      .|.++++++++.+....
T Consensus       302 ~~p~~r~~~~--~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~  350 (357)
T 2uvk_A          302 ELSQGRAYGV--SLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL  350 (357)
T ss_dssp             ECSSCCBSSE--EEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred             CCCCCcccce--eEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence            2222222222  2334678888888543      36667888887766554

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.03  E-value=0.071  Score=41.07  Aligned_cols=192  Identities=9%  Similarity=0.039  Sum_probs=94.3

Q ss_pred             cCCCCEEEEeec----CC-------eEEEEEccCCeeeee--eeeeeeceEEEEEeccCCeEEEeccCC----CCCceEE
Q 023822           43 HKSSSYLVTASD----DE-------SIRLYDVTAATCLKT--INSKKYGVDLVCFTSHPTTVIYSSKNG----WDESLRL  105 (276)
Q Consensus        43 ~~~~~~l~~~~~----d~-------~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~~~----~d~~i~~  105 (276)
                      ..++..++.|+.    ++       .+.+||..+.+-...  +...... .+++. .+++.++.++...    ....+.+
T Consensus        54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~  131 (318)
T 2woz_A           54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL-FGLGE-VDDKIYVVAGKDLQTEASLDSVLC  131 (318)
T ss_dssp             CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS-CEEEE-ETTEEEEEEEEBTTTCCEEEEEEE
T ss_pred             EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc-cceEE-ECCEEEEEcCccCCCCcccceEEE
Confidence            346677777773    12       177888876654322  1111111 12222 2566666766410    1145788


Q ss_pred             EEccCCceeee--ecccCcceEEEEeccCCCEEEEeeC------CCeEEEEeccCceeeeeE--eecCC-CeeEecCCCc
Q 023822          106 LSLHDNKYLRY--FKGHHDRVVSLSLCSSKDCFISGSL------DRTVLLWDQRAEKCQGLL--RVQGR-PAAAYDDQGL  174 (276)
Q Consensus       106 ~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~--~~~~~-~~~~~~~~~~  174 (276)
                      ||+.+.+-...  +...... .+++. .++++++.|+.      -..+.+||+.+.+-...-  ..... ..++.. +++
T Consensus       132 yd~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~  208 (318)
T 2woz_A          132 YDPVAAKWSEVKNLPIKVYG-HNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH-KGK  208 (318)
T ss_dssp             EETTTTEEEEECCCSSCEES-CEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTE
T ss_pred             EeCCCCCEeECCCCCCcccc-cEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE-CCE
Confidence            88877643221  1111111 11222 46777777764      235899999877543322  11111 122332 455


Q ss_pred             EEEEee-C-----CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecC--------------CcEEEEE
Q 023822          175 VFAVAF-G-----GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME--------------GHIHVLD  234 (276)
Q Consensus       175 ~l~~~~-d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------------g~i~i~d  234 (276)
                      +++.+. +     ..+.+||+.+.+=  ..+............+.  -++++++.|+.+              ..+.+||
T Consensus       209 iyv~GG~~~~~~~~~~~~yd~~~~~W--~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd  284 (318)
T 2woz_A          209 IVIAGGVTEDGLSASVEAFDLKTNKW--EVMTEFPQERSSISLVS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYE  284 (318)
T ss_dssp             EEEEEEEETTEEEEEEEEEETTTCCE--EECCCCSSCCBSCEEEE--ETTEEEEECCBCCBC----CCBCCBCCCEEEEE
T ss_pred             EEEEcCcCCCCccceEEEEECCCCeE--EECCCCCCcccceEEEE--ECCEEEEECCeeccCCCCceeccceeeeEEEEe
Confidence            555554 2     4577888876431  11111111111112222  356777777653              3588899


Q ss_pred             CCCCcEEEE
Q 023822          235 SFRGTLLST  243 (276)
Q Consensus       235 ~~~~~~~~~  243 (276)
                      ..+.+-...
T Consensus       285 ~~~~~W~~~  293 (318)
T 2woz_A          285 DDKKEWAGM  293 (318)
T ss_dssp             TTTTEEEEE
T ss_pred             CCCCEehhh
Confidence            888765544

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=96.89  E-value=0.15  Score=42.43  Aligned_cols=221  Identities=10%  Similarity=0.071  Sum_probs=127.0

Q ss_pred             CCCEEEEee-cCCeEEEEEccCCeeeeeeeee-eeceEEEEEe--ccCCeEEEeccCC----CCCce---------EE--
Q 023822           45 SSSYLVTAS-DDESIRLYDVTAATCLKTINSK-KYGVDLVCFT--SHPTTVIYSSKNG----WDESL---------RL--  105 (276)
Q Consensus        45 ~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~l~~~~~~~----~d~~i---------~~--  105 (276)
                      ||++|..-. .+..|-..+++..++-+.+... ...+..++|.  |+..+++..+...    .||..         .+  
T Consensus       141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~  220 (638)
T 3sbq_A          141 DGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYN  220 (638)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEE
T ss_pred             eeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEE
Confidence            677887766 4567888888888877666543 3467888886  6888888776521    13221         11  


Q ss_pred             -EEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCC---------------eEEEEe--------------------
Q 023822          106 -LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR---------------TVLLWD--------------------  149 (276)
Q Consensus       106 -~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---------------~i~iwd--------------------  149 (276)
                       .|..+.+...++. -.+....+...+++.+.++.+.+.               .+.++|                    
T Consensus       221 ~iD~~tm~v~~Qv~-v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~g  299 (638)
T 3sbq_A          221 AIDAETMEMAFQVI-VDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSK  299 (638)
T ss_dssp             EEETTTCSEEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCC
T ss_pred             EEcCCccEEEEEEE-cCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCC
Confidence             1222333322221 122233344566777766655321               244444                    


Q ss_pred             -----ccC----ce-eeeeE-eecCCCeeEecCCCcEEEEee--CCeEEEEecccCCC-------CCe-eeeeecCCCCC
Q 023822          150 -----QRA----EK-CQGLL-RVQGRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEK-------GPF-DIFSVGGDISD  208 (276)
Q Consensus       150 -----~~~----~~-~~~~~-~~~~~~~~~~~~~~~~l~~~~--d~~i~~~d~~~~~~-------~~~-~~~~~~~~~~~  208 (276)
                           .+.    +. ....+ .......+..+|+|++++++.  +.++.++|++....       .+. .+.....-...
T Consensus       300 v~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlG  379 (638)
T 3sbq_A          300 TPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLG  379 (638)
T ss_dssp             CCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSC
T ss_pred             eeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCc
Confidence                 332    11 11111 112234688999999999888  89999999985211       000 01111112345


Q ss_pred             ceEEEECCCCcEEEEeecCCcEEEEECCCC----------cEEEEeecCCCCCCceEEEEE------CCCCcEEEEec
Q 023822          209 ANVVKFSNDGRLMLLTTMEGHIHVLDSFRG----------TLLSTYNVKPVSRNSTLEASF------SPEGMFVISGR  270 (276)
Q Consensus       209 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----------~~~~~~~~~~~~~~~v~~~~~------s~~g~~l~~~~  270 (276)
                      ....+|.++|....+---|..|.-|++...          ..+..+.   .|-. +-.+.-      .|||++|++..
T Consensus       380 PlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~d---v~Yq-pGH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          380 PLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLD---VHYQ-PGHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             EEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEE---CSSC-EEEEEETTTTSTTCCSCEEEEEE
T ss_pred             ccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccc---cccC-CcccccCCCccCCCCccEEEEec
Confidence            678999999965556668999999998653          3455555   2322 222322      68999998863

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.81  E-value=0.11  Score=39.83  Aligned_cols=176  Identities=9%  Similarity=0.051  Sum_probs=102.2

Q ss_pred             EEEcCCCCEEEEeecC--------------CeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEec--cCCCCCce
Q 023822           40 MDFHKSSSYLVTASDD--------------ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSS--KNGWDESL  103 (276)
Q Consensus        40 ~~~~~~~~~l~~~~~d--------------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~~d~~i  103 (276)
                      --+++++.+|+-+...              ..|+..+++.++... +...    ....|+++++.|+...  .. ....|
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~----~~~~~s~~g~~Iy~~~~~~~-~~~~I  131 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPD----PCIYASLIGNYIYYLHYDTQ-TATSL  131 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECS----CEEEEEEETTEEEEEEESSS-SCEEE
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecC----CccEEEEeCCEEEEEeecCC-CCceE
Confidence            3467888888876543              367777776554322 2211    1236788999998876  21 15566


Q ss_pred             EEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeC-CCeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEee--
Q 023822          104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF--  180 (276)
Q Consensus       104 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--  180 (276)
                      ...++.... ...+..+..    ..++++++.|+-.+. ...|...++........+. . .....+.|++..|+-..  
T Consensus       132 y~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~-~-~~~~~~~P~g~~iy~t~~~  204 (302)
T 3s25_A          132 YRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD-C-NCYKPVVLDDTNVYYMDVN  204 (302)
T ss_dssp             EEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC-S-CEEEEEEEETTEEEEEEGG
T ss_pred             EEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC-C-CccceeeecCCEEEEEEcC
Confidence            666766433 344443332    456778887775554 5678888887765443332 2 22234568777766655  


Q ss_pred             C-CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEee--cCCcEEEEECCC
Q 023822          181 G-GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT--MEGHIHVLDSFR  237 (276)
Q Consensus       181 d-~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~  237 (276)
                      + ..|..-++.....     ..+..  ..+  ..|+|+++.|+.++  ..+.|..-++..
T Consensus       205 ~~~~I~~~~ldG~~~-----~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG  255 (302)
T 3s25_A          205 RDNAIVHVNINNPNP-----VVLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDG  255 (302)
T ss_dssp             GTTEEEEECSSSCCC-----EECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred             CCcEEEEEECCCCCe-----EEEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence            2 4677777665442     11111  122  34788888887653  235677777643

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.73  E-value=0.35  Score=44.48  Aligned_cols=227  Identities=11%  Similarity=0.099  Sum_probs=121.2

Q ss_pred             CCcEEEEEEcCC------CCEEEEeec-CCeEEEEEccCCeeeeeeeee-eeceEEEEEe--ccCCeEEEeccCCCCCce
Q 023822           34 NGRISSMDFHKS------SSYLVTASD-DESIRLYDVTAATCLKTINSK-KYGVDLVCFT--SHPTTVIYSSKNGWDESL  103 (276)
Q Consensus        34 ~~~v~~~~~~~~------~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~l~~~~~~~~d~~i  103 (276)
                      ...|.|+++.|.      +++++.|.. |++++|+++.+.+.+....-. .....++.+.  ....++.++-.   ||.+
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~---dG~l  629 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALG---DGAL  629 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEET---TSEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeC---CCeE
Confidence            568999999863      468999996 999999999876655432211 1123333332  23356777776   8888


Q ss_pred             EEEEcc--CCceee---eecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCceeeeeEeecCCC-eeEecCC--Cc
Q 023822          104 RLLSLH--DNKYLR---YFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQGRP-AAAYDDQ--GL  174 (276)
Q Consensus       104 ~~~d~~--~~~~~~---~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~--~~  174 (276)
                      .-+.+.  +++...   .+.+ ..++.-..+...+. -+++++ +....+|--+..-....+....+. ...|+..  ..
T Consensus       630 ~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~~~  707 (1158)
T 3ei3_A          630 FYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPD  707 (1158)
T ss_dssp             EEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSSTT
T ss_pred             EEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcCCceEEeccChHHhceEeccCcccCCC
Confidence            766654  343321   1222 33444444443443 233333 344444443322111111222222 3344432  23


Q ss_pred             EEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeec----------------------------
Q 023822          175 VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM----------------------------  226 (276)
Q Consensus       175 ~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------------------------  226 (276)
                      -++...++.+++..+....  ......++- ...+..++++|..+.++.+..                            
T Consensus       708 g~v~~~~~~LrI~~i~~~~--~~~~~~ipL-~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  784 (1158)
T 3ei3_A          708 SLALANNSTLTIGTIDEIQ--KLHIRTVPL-YESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVS  784 (1158)
T ss_dssp             EEEEECSSCEEEEEECCSS--SEEEEEEEC-SSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEEC
T ss_pred             cEEEEcCCceEEEEecccC--CeeEEEEeC-CCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhccc
Confidence            4445556679998886543  233333322 246778888887665444321                            


Q ss_pred             ---------------------CCcEEEEECCCCcEEEEeecCCCCCCceEEEE---ECCC-CcEEEEec
Q 023822          227 ---------------------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS---FSPE-GMFVISGR  270 (276)
Q Consensus       227 ---------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~---~s~~-g~~l~~~~  270 (276)
                                           -+.|++.|..+.+.+..+...  ....+.+++   |..+ ..+|++|+
T Consensus       785 ~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~--~nE~~~sv~~v~~~~~~~~~lvVGT  851 (1158)
T 3ei3_A          785 SSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFL--QNEYALSLVSCKLGKDPNTYFIVGT  851 (1158)
T ss_dssp             CCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECC--TTEEEEEEEEECCTTCCCCEEEEEE
T ss_pred             ccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCC--CCcceEEEEEEEEccCCCEEEEEEe
Confidence                                 124778888888887777643  234444444   4333 46888776

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.67  E-value=0.29  Score=42.76  Aligned_cols=221  Identities=10%  Similarity=0.037  Sum_probs=123.5

Q ss_pred             cEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceee
Q 023822           36 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR  115 (276)
Q Consensus        36 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~  115 (276)
                      .|.++...+++..|..|.. +-+..+|..+++...........|.++....++...+ ++.   + -+.+++..+++...
T Consensus       192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~---~-Gl~~~~~~~~~~~~  265 (758)
T 3ott_A          192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTD---N-GLYVYHNDTTPLQH  265 (758)
T ss_dssp             CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EET---T-EEEEECCTTSCCEE
T ss_pred             eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeC---C-ceeEEecCCCcEEE
Confidence            4788888777665555554 3588888877654332222344577877766665544 443   4 47788876654322


Q ss_pred             eec-------ccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE---------eecCCCeeEecCCCcEEEEe
Q 023822          116 YFK-------GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL---------RVQGRPAAAYDDQGLVFAVA  179 (276)
Q Consensus       116 ~~~-------~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~  179 (276)
                      ...       -....|.++....++.+ -.|+..| +.++....  ....+         ....+.++....++.+.+++
T Consensus       266 ~~~~~~~~~~l~~~~i~~i~~D~~g~l-WiGT~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt  341 (758)
T 3ott_A          266 IIHDSRNIQSLTNNIIWNIFADQEHNI-WLGTDYG-ISLSRYNS--ALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGG  341 (758)
T ss_dssp             ECCCTTCTTSCSCSCEEEEEECTTCCE-EEEESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEE
T ss_pred             EEcCCCCcCcCCcCeEEEEEEcCCCCE-EEEeCCc-ccccccCC--ceeEEecccCCCCCCCceEEEEEEcCCCCEEEee
Confidence            111       02345888888777764 4455556 55443221  11111         11234566677788887776


Q ss_pred             eCCeEEEEecccCCCCCeeeeeec-----CCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCC-C--CC
Q 023822          180 FGGYIRMFDARKYEKGPFDIFSVG-----GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP-V--SR  251 (276)
Q Consensus       180 ~d~~i~~~d~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~--~~  251 (276)
                      .+ -+..++..+.....+..+...     .....|.++.-.++|++.+ |+ ++-+..||..+++...-..... .  ..
T Consensus       342 ~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~  418 (758)
T 3ott_A          342 AN-GLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATRQFIHYNIVDNTGTYNT  418 (758)
T ss_dssp             TT-EEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTTEEEEEEEECCC--CBS
T ss_pred             CC-cceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCCcEEEeecCCCcCCCCC
Confidence            44 577777654322222122111     1123578888888887544 55 4569999988775543221100 0  23


Q ss_pred             CceEEEEECCCCcEEEEe
Q 023822          252 NSTLEASFSPEGMFVISG  269 (276)
Q Consensus       252 ~~v~~~~~s~~g~~l~~~  269 (276)
                      ..|.++.-.++|++.+..
T Consensus       419 ~~v~~i~~d~~g~lWigT  436 (758)
T 3ott_A          419 NWTYYIFEDTAGQLWIST  436 (758)
T ss_dssp             SSEEEEEECTTSEEEEEE
T ss_pred             ceEEEEEEcCCCCEEEEE
Confidence            468888888888755543

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=96.17  E-value=0.57  Score=40.64  Aligned_cols=223  Identities=13%  Similarity=0.109  Sum_probs=116.8

Q ss_pred             EEEE-EcCCCCEEEEee-----cCCeEEEEEccCCeeeee-eeeeee--------ceEEEEEeccCCeEEEecc------
Q 023822           38 SSMD-FHKSSSYLVTAS-----DDESIRLYDVTAATCLKT-INSKKY--------GVDLVCFTSHPTTVIYSSK------   96 (276)
Q Consensus        38 ~~~~-~~~~~~~l~~~~-----~d~~i~iwd~~~~~~~~~-~~~~~~--------~v~~~~~~~~~~~l~~~~~------   96 (276)
                      ..+. ++|++++++.+-     .-..++++|+.+++.+.. +. ...        ....++|. ++..++.+..      
T Consensus       132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~~  209 (711)
T 4hvt_A          132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNEI  209 (711)
T ss_dssp             EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTCB
T ss_pred             eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEE-CCCEEEEEeCCCCCCc
Confidence            3445 889998877542     223799999999987642 22 111        12455887 4444444321      


Q ss_pred             --CCCCCceEEEEccCCc--eeeeecccCcce-EEEEeccCCC-----EEEEeeC---CCeEEEEeccC--ceeeeeEee
Q 023822           97 --NGWDESLRLLSLHDNK--YLRYFKGHHDRV-VSLSLCSSKD-----CFISGSL---DRTVLLWDQRA--EKCQGLLRV  161 (276)
Q Consensus        97 --~~~d~~i~~~d~~~~~--~~~~~~~~~~~i-~~~~~~~~~~-----~l~~~~~---d~~i~iwd~~~--~~~~~~~~~  161 (276)
                        .+....|+.|.+-+..  -...+.+....+ .....+++++     .+++.+.   ...+.+.|...  ++. ..+..
T Consensus       210 ~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~  288 (711)
T 4hvt_A          210 TSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKINM  288 (711)
T ss_dssp             CTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECCS
T ss_pred             CcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEeec
Confidence              1224678888876542  222333333222 2344456665     2444332   24566666553  221 22222


Q ss_pred             cCCCeeEecCCCcEEEEe-----------eCCeEEEEecccCCC-----CCeeeeeecCCCCCceEEEECCCCcEEEEee
Q 023822          162 QGRPAAAYDDQGLVFAVA-----------FGGYIRMFDARKYEK-----GPFDIFSVGGDISDANVVKFSNDGRLMLLTT  225 (276)
Q Consensus       162 ~~~~~~~~~~~~~~l~~~-----------~d~~i~~~d~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  225 (276)
                      ..-..+....++.+++..           -.+.|...|+.....     ..............+..+.+..+ .++++..
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~  367 (711)
T 4hvt_A          289 PSDATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATY  367 (711)
T ss_dssp             CTTCEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEE
T ss_pred             CCcceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEE
Confidence            222233344566655532           256788999877421     11222122333446778888876 5666666


Q ss_pred             cCCc--EEEEECCCCc-EEEE-eecCCCCCCceEEEEECCCCcEE
Q 023822          226 MEGH--IHVLDSFRGT-LLST-YNVKPVSRNSTLEASFSPEGMFV  266 (276)
Q Consensus       226 ~dg~--i~i~d~~~~~-~~~~-~~~~~~~~~~v~~~~~s~~g~~l  266 (276)
                      .++.  +.++++.+++ .... +...  ..+.+.....++++..+
T Consensus       368 ~~~~~~l~~~~~~~g~~~~~~~i~lp--~~~~~~~~~~~~~~~~~  410 (711)
T 4hvt_A          368 DNVVAKVVTFTLENEQWTKPVVLKLP--YQNAIFGMSSYEEEEEA  410 (711)
T ss_dssp             ETTEEEEEEECEETTEECCCEEECCC--STTCEEEEECCTTCSCE
T ss_pred             ECCEEEEEEEECCCCceEEEeccCCC--CCeEEEEEeecCcCCEE
Confidence            6764  6777776665 2333 3311  13456666777776543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.93  E-value=0.21  Score=41.56  Aligned_cols=73  Identities=10%  Similarity=0.085  Sum_probs=54.5

Q ss_pred             ceEEEEEeccCCeEEEeccCCCCCceEEEEccCC------ce-------eeeecccCcceEEEEeccCCCEEEEeeCCCe
Q 023822           78 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN------KY-------LRYFKGHHDRVVSLSLCSSKDCFISGSLDRT  144 (276)
Q Consensus        78 ~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~------~~-------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  144 (276)
                      ....+.++|+|+++++++.-  +.++.++|++..      +.       ....+ -.-.....+|.++|+...+.-.|..
T Consensus       324 sPHGv~vsPDGkyi~v~GKL--sptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSq  400 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKL--SPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQ  400 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTT--SSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTE
T ss_pred             CCcceeeCCCCCEEEEcCCC--CCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecce
Confidence            45678999999999999874  899999998742      11       11222 2234577899999976777778999


Q ss_pred             EEEEeccCc
Q 023822          145 VLLWDQRAE  153 (276)
Q Consensus       145 i~iwd~~~~  153 (276)
                      |.-|++...
T Consensus       401 vvkWni~~a  409 (638)
T 3sbq_A          401 VVKWNMEEA  409 (638)
T ss_dssp             EEEEEHHHH
T ss_pred             EEEEeccHH
Confidence            999998753

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=95.64  E-value=0.73  Score=37.69  Aligned_cols=107  Identities=7%  Similarity=-0.006  Sum_probs=58.9

Q ss_pred             CcEEEEEEcCCCC-EEEEeecCCeEEEEEccCCe---eeeeee---------eeeeceEEEEEecc---CCeEEEeccCC
Q 023822           35 GRISSMDFHKSSS-YLVTASDDESIRLYDVTAAT---CLKTIN---------SKKYGVDLVCFTSH---PTTVIYSSKNG   98 (276)
Q Consensus        35 ~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~---~~~~~~---------~~~~~v~~~~~~~~---~~~l~~~~~~~   98 (276)
                      ..-..|+|.|++. .|+++...|.|++++.....   .+..+.         ........|+|+|+   +..|.+.....
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            3457899999986 45556688999999754221   122111         11356788999986   33444332100


Q ss_pred             CC----------CceEEEEccCC----------ceeeeec--ccCcceEEEEeccCCCEEEEeeC
Q 023822           99 WD----------ESLRLLSLHDN----------KYLRYFK--GHHDRVVSLSLCSSKDCFISGSL  141 (276)
Q Consensus        99 ~d----------~~i~~~d~~~~----------~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~  141 (276)
                      .+          ..|.-|.+..+          +.+..+.  ...-.-..|+|.|||.++++.+.
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence            01          14444555321          1222221  11123578999999987666554

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.21  E-value=0.31  Score=37.95  Aligned_cols=103  Identities=7%  Similarity=0.070  Sum_probs=64.5

Q ss_pred             CeEEEeccCCCCCceEEEEccCCceeeeeccc-CcceEEEEec--c-CCCEEEEe-eCCCeEEEEeccCceeeeeEeecC
Q 023822           89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH-HDRVVSLSLC--S-SKDCFISG-SLDRTVLLWDQRAEKCQGLLRVQG  163 (276)
Q Consensus        89 ~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~i~~~~~~--~-~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~  163 (276)
                      ..+++++.   ||.|.-+|..+|+...+++.. ..++....-.  + ++..++.. +.||.|..+|..++.....+....
T Consensus        11 ~~V~v~t~---dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~   87 (339)
T 2be1_A           11 DILIAADV---EGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ   87 (339)
T ss_dssp             EEEEEEET---TSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHH
T ss_pred             CEEEEEeC---CCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccc
Confidence            35667776   999999999999998888654 1222221100  1 22334343 689999999988875544332111


Q ss_pred             ---CCeeEe------------cCCCcEEEEeeCCeEEEEecccCCC
Q 023822          164 ---RPAAAY------------DDQGLVFAVAFGGYIRMFDARKYEK  194 (276)
Q Consensus       164 ---~~~~~~------------~~~~~~l~~~~d~~i~~~d~~~~~~  194 (276)
                         ...+..            +.++.+++++.++.+...|+++++.
T Consensus        88 lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~  133 (339)
T 2be1_A           88 LVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEI  133 (339)
T ss_dssp             HHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCE
T ss_pred             ceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcE
Confidence               111221            2456666777799999999998774

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.11  E-value=1.5  Score=37.99  Aligned_cols=184  Identities=10%  Similarity=0.042  Sum_probs=94.9

Q ss_pred             ccCCeEEEeccCC-CCCceEEEEccCCceeeee-c------ccCcceEEEEecc-CCCEEEEeeCC------CeEEEEec
Q 023822           86 SHPTTVIYSSKNG-WDESLRLLSLHDNKYLRYF-K------GHHDRVVSLSLCS-SKDCFISGSLD------RTVLLWDQ  150 (276)
Q Consensus        86 ~~~~~l~~~~~~~-~d~~i~~~d~~~~~~~~~~-~------~~~~~i~~~~~~~-~~~~l~~~~~d------~~i~iwd~  150 (276)
                      .++..++.|+..+ .-..+.+||..+++-...- .      .....-.+++..+ ++++++.|+.+      ..+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            4666777776421 1346888998877533222 1      1111122333333 77788888754      35888998


Q ss_pred             cCceeeeeE--eecCC-CeeEecCCCcEEEEee-C--CeEEEEecccCCCCCeeeee----ecCCCCCceEEEECCC-Cc
Q 023822          151 RAEKCQGLL--RVQGR-PAAAYDDQGLVFAVAF-G--GYIRMFDARKYEKGPFDIFS----VGGDISDANVVKFSND-GR  219 (276)
Q Consensus       151 ~~~~~~~~~--~~~~~-~~~~~~~~~~~l~~~~-d--~~i~~~d~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~-~~  219 (276)
                      .+.+-...-  ..... ..++.-.++++++.|. +  +.+.+||..+..=   ....    ..........+.+..+ ++
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W---~~~~~~g~~p~~r~~~~a~v~~~~~~~  552 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIF---KDVTPKDEFFQNSLVSAGLEFDPVSKQ  552 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEE---EECCCSSGGGGSCCBSCEEEEETTTTE
T ss_pred             CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCce---EEccCCCCCCCcccceeEEEEeCCCCE
Confidence            876543321  11111 1333324666666665 3  3789999876431   1111    1112222334565655 67


Q ss_pred             EEEEeec--C-----CcEEEEECCCCcE-----EEEeecC-CCCCCceEEEEECCCCcEEEEecCCC
Q 023822          220 LMLLTTM--E-----GHIHVLDSFRGTL-----LSTYNVK-PVSRNSTLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       220 ~l~~~~~--d-----g~i~i~d~~~~~~-----~~~~~~~-~~~~~~v~~~~~s~~g~~l~~~~~dg  273 (276)
                      +++.|+.  +     +.+.+||+.+.+.     -..+... ....... ++....++++++.||.++
T Consensus       553 iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~~~  618 (695)
T 2zwa_A          553 GIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGTSP  618 (695)
T ss_dssp             EEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCBCS
T ss_pred             EEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCccC
Confidence            7777775  2     3588999988771     1222110 0011111 223334478888888653

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=94.49  E-value=1.7  Score=35.61  Aligned_cols=22  Identities=18%  Similarity=0.164  Sum_probs=16.8

Q ss_pred             CceEEEEECCCCcEEEEecCCC
Q 023822          252 NSTLEASFSPEGMFVISGRVSP  273 (276)
Q Consensus       252 ~~v~~~~~s~~g~~l~~~~~dg  273 (276)
                      .....|+|.|||.+.++.++.+
T Consensus       139 H~g~~l~fgpDG~LYv~~Gd~~  160 (463)
T 2wg3_C          139 HLGGQLLFGPDGFLYIILGDGM  160 (463)
T ss_dssp             SCEEEEEECTTSCEEEEECCTT
T ss_pred             ccCCcEeECCCCcEEEEeCCCC
Confidence            3467899999998777766654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.30  E-value=2.3  Score=39.96  Aligned_cols=129  Identities=9%  Similarity=0.106  Sum_probs=79.0

Q ss_pred             CCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCC
Q 023822           55 DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD  134 (276)
Q Consensus        55 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  134 (276)
                      ..+|.|-|+.++..+.+..   -..-+.-.+|..+.++.-.    ...+.++|+++...+....- +.+|.-=.|-... 
T Consensus        47 ~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra----g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~-  117 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA----GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-  117 (1630)
T ss_pred             CceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec----CCeEEEeehHHhhhhccccc-CCCceEEEecCCC-
Confidence            3478888988766442221   1223445677777666554    78999999998877666553 3455555665443 


Q ss_pred             EEEEeeCCCeEEEEeccCc-eeeeeEe------ecCCCeeEecCCCcEEEEee--------CCeEEEEecccCC
Q 023822          135 CFISGSLDRTVLLWDQRAE-KCQGLLR------VQGRPAAAYDDQGLVFAVAF--------GGYIRMFDARKYE  193 (276)
Q Consensus       135 ~l~~~~~d~~i~iwd~~~~-~~~~~~~------~~~~~~~~~~~~~~~l~~~~--------d~~i~~~d~~~~~  193 (276)
                      .|+..+ +..|+.|++... .+.+.+.      ...+..-..+++.++++..+        .|.+.+|..+...
T Consensus       118 ~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~  190 (1630)
T 1xi4_A          118 TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV  190 (1630)
T ss_pred             eeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc
Confidence            344443 457999999742 3433331      22344456677777766433        3888999887644

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=93.68  E-value=2.3  Score=34.40  Aligned_cols=196  Identities=9%  Similarity=0.076  Sum_probs=109.3

Q ss_pred             cEEEEEEcCCCCEEEEeecCCeEEEEEccC-Ceeeeeeeee----eeceEEEEEeccCCeEEEeccC----CCCCceEEE
Q 023822           36 RISSMDFHKSSSYLVTASDDESIRLYDVTA-ATCLKTINSK----KYGVDLVCFTSHPTTVIYSSKN----GWDESLRLL  106 (276)
Q Consensus        36 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~~----~~d~~i~~~  106 (276)
                      .|.-=.|-.+ +.|+..+ +..|+-|+++. ..+...+..|    ...|.....+++.+.++..+-.    ...|.+.+|
T Consensus       107 ~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLY  184 (494)
T 1bpo_A          107 DVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLY  184 (494)
T ss_dssp             CCCEEEEEET-TEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEE
T ss_pred             CceEEEecCC-CeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEe
Confidence            3433444332 3455443 35799999974 3455555544    3467788888888887755431    125788999


Q ss_pred             EccCCceeeeecccCcceEEEEeccCC---CEEEEeeCC---CeEEEEeccCc---ee-----eeeE--eecC----CCe
Q 023822          107 SLHDNKYLRYFKGHHDRVVSLSLCSSK---DCFISGSLD---RTVLLWDQRAE---KC-----QGLL--RVQG----RPA  166 (276)
Q Consensus       107 d~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~d---~~i~iwd~~~~---~~-----~~~~--~~~~----~~~  166 (276)
                      ..+.+ ..+.+.+|......+.+..+.   +.|+.+...   +++++-++...   ..     ...+  ....    ...
T Consensus       185 S~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPva  263 (494)
T 1bpo_A          185 SVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVA  263 (494)
T ss_dssp             ESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEE
T ss_pred             ecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeE
Confidence            87654 456778888776665554222   245545443   78999998643   10     1111  1111    125


Q ss_pred             eEecCCC-cEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCC
Q 023822          167 AAYDDQG-LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG  238 (276)
Q Consensus       167 ~~~~~~~-~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  238 (276)
                      +..++.. -+++...-|.|++||+.++..    ++...-...+|-..+-+....=++.....|.|.--.+...
T Consensus       264 mqvs~kygviyviTK~G~i~lyDleTgt~----i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~  332 (494)
T 1bpo_A          264 MQISEKHDVVFLITKYGYIHLYDLETGTC----IYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE  332 (494)
T ss_dssp             EEEETTTTEEEEEETTSEEEEEETTTCCE----EEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred             EEecccCCEEEEEecCceEEEEeccccee----eeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence            5666654 444555589999999999765    4443333334433333333223444445555555544443

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=91.96  E-value=3.1  Score=31.38  Aligned_cols=180  Identities=11%  Similarity=0.035  Sum_probs=85.5

Q ss_pred             cEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceee
Q 023822           36 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR  115 (276)
Q Consensus        36 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~  115 (276)
                      .|..++.... ..++. . ||.|+.|-......+..-......|..++..  ..+.+.. .   ||.|+.|-......+-
T Consensus        25 ~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G--~~hs~~l-~---~G~v~~wG~n~~Gqlg   95 (282)
T 3qhy_B           25 GVDAIAGGYF-HGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAG--NYHSLAL-K---DGEVIAWGGNEDGQTT   95 (282)
T ss_dssp             SCCEEEECSS-EEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEEC--SSEEEEE-E---TTEEEEEECCTTSTTC
T ss_pred             CCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeC--CCEEEEE-E---CCEEEEeeCCCCCCCC
Confidence            4666666543 23333 4 8889988755322111111112245555543  2333333 3   7788888654322111


Q ss_pred             eecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEeeCCeEEEEecccCC
Q 023822          116 YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYE  193 (276)
Q Consensus       116 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~  193 (276)
                      .-..-...|..++.-.+  ..+.-. ||.|+.|-..........  ....+..++... ...++.. |+.++.|-.....
T Consensus        96 ~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~-~~~~~l~-~G~v~~wG~n~~g  170 (282)
T 3qhy_B           96 VPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGV-YTALAVK-NGGVIAWGDNYFG  170 (282)
T ss_dssp             CCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECS-SEEEEEE-TTEEEEEECCTTS
T ss_pred             CCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEccc-CEEEEEE-CCEEEEecCCCCC
Confidence            11111345777766543  333344 899999976543221111  111222232222 2333333 7888888765433


Q ss_pred             CCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECC
Q 023822          194 KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF  236 (276)
Q Consensus       194 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  236 (276)
                      ......    .....|..++...+.. ++.  .||.|+.|-..
T Consensus       171 qlg~p~----~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n  206 (282)
T 3qhy_B          171 QTTVPA----EAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDN  206 (282)
T ss_dssp             TTSCCG----GGGSSEEEEEECSSEE-EEE--ETTEEEEEECC
T ss_pred             CCCCce----ecCCCeEEEEecCCEE-EEE--ECCeEEEEECC
Confidence            211111    1123566666654433 333  58889988654

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=91.63  E-value=4.2  Score=32.22  Aligned_cols=211  Identities=8%  Similarity=-0.006  Sum_probs=115.5

Q ss_pred             CCcEEEEEEcCCCCEEE--Eeec-------------CCeEEEEEccCC--eeeeeeeee------eeceEEEEEe---cc
Q 023822           34 NGRISSMDFHKSSSYLV--TASD-------------DESIRLYDVTAA--TCLKTINSK------KYGVDLVCFT---SH   87 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~--~~~~-------------d~~i~iwd~~~~--~~~~~~~~~------~~~v~~~~~~---~~   87 (276)
                      --.|..+...+.+++-+  +|-.             --.|.+||+.+.  +.++++...      ......+++.   |+
T Consensus        86 lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~  165 (381)
T 3q6k_A           86 LTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPK  165 (381)
T ss_dssp             SSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTT
T ss_pred             eEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCC
Confidence            34677888877666433  2211             125889999999  888887643      3457788887   22


Q ss_pred             ----CCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecC
Q 023822           88 ----PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG  163 (276)
Q Consensus        88 ----~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  163 (276)
                          +.++..+.. + ...|.++|+.+++.-+.+  |..      |.|+.....  ..+|.-.-|            ..+
T Consensus       166 ~~c~~~~aYItD~-~-~~gLIVydl~~~~swRv~--~~~------~~pd~~~~~--~i~G~~~~~------------~~G  221 (381)
T 3q6k_A          166 GDCSETFVYITNF-L-RGALFIYDHKKQDSWNVT--HPT------FKAERPTKF--DYGGKEYEF------------KAG  221 (381)
T ss_dssp             TTSCSEEEEEEET-T-TTEEEEEETTTTEEEEEE--CGG------GSCCSCEEE--EETTEEEEE------------CCC
T ss_pred             CCCCccEEEEEcC-C-CCcEEEEECCCCcEEEEc--cCC------CccccCcce--EECCEEeEe------------ccC
Confidence                334444443 2 788999999998876655  321      344411111  112321111            234


Q ss_pred             CCeeEecCC----CcEEEEee--CCeEEEEecc---cCCC-CCeeeeeecCCCCCceEEEEC-CCCcEEEEeecCCcEEE
Q 023822          164 RPAAAYDDQ----GLVFAVAF--GGYIRMFDAR---KYEK-GPFDIFSVGGDISDANVVKFS-NDGRLMLLTTMEGHIHV  232 (276)
Q Consensus       164 ~~~~~~~~~----~~~l~~~~--d~~i~~~d~~---~~~~-~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i  232 (276)
                      +..++++|+    ++.|....  ...++-...+   .... ..+...-..+....-..+++. .+|.++++--..+.|..
T Consensus       222 i~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~  301 (381)
T 3q6k_A          222 IFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSC  301 (381)
T ss_dssp             EEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEE
T ss_pred             ceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEE
Confidence            567788876    55555555  2233333321   1111 111111111111233456775 67877777777889999


Q ss_pred             EECCC-C---cEEEEeecCCCCCCceEEEEECCCCcEEEEe
Q 023822          233 LDSFR-G---TLLSTYNVKPVSRNSTLEASFSPEGMFVISG  269 (276)
Q Consensus       233 ~d~~~-~---~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  269 (276)
                      |+..+ .   +....+...+ .-..+..+.+.++|.+.+..
T Consensus       302 w~~~~~~~~~~n~~~l~~d~-~l~~pd~~~i~~~g~Lwv~s  341 (381)
T 3q6k_A          302 WNTQKMPLRMKNTDVVYTSS-RFVFGTDISVDSKGGLWFMS  341 (381)
T ss_dssp             EETTSCSBCGGGEEEEEECT-TCCSEEEEEECTTSCEEEEE
T ss_pred             EeCCCCccccCceEEEEECC-CccccCeEEECCCCeEEEEE
Confidence            99765 1   2233333222 33467888888888765544

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=90.92  E-value=1.4  Score=37.19  Aligned_cols=59  Identities=22%  Similarity=0.282  Sum_probs=42.8

Q ss_pred             ceEEEECCCCcEEEEeecC------------CcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEe
Q 023822          209 ANVVKFSNDGRLMLLTTME------------GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG  269 (276)
Q Consensus       209 i~~~~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  269 (276)
                      .-.|+|+|.|++++.-..+            +.+.+.+..+++....+..  .....++.++|+||++.|++.
T Consensus       478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~--P~gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG--PIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEEC--CTTCEEEEEEECTTSSEEEEE
T ss_pred             CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeC--CCCccCcCeeECCCCCEEEEE
Confidence            4569999999976664322            2466677777777665553  256789999999999988765

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=90.33  E-value=2.3  Score=38.39  Aligned_cols=39  Identities=31%  Similarity=0.455  Sum_probs=33.8

Q ss_pred             CcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeee
Q 023822           35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN   73 (276)
Q Consensus        35 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~   73 (276)
                      ..+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus       236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            357778888888899999999999999999999888754

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=89.93  E-value=2.5  Score=35.46  Aligned_cols=62  Identities=21%  Similarity=0.254  Sum_probs=43.6

Q ss_pred             CCceEEEECCCCcEEEEeec------------CCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEec
Q 023822          207 SDANVVKFSNDGRLMLLTTM------------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGR  270 (276)
Q Consensus       207 ~~i~~~~~~~~~~~l~~~~~------------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  270 (276)
                      .....|.|+++|.+.+....            .+.|..++..++++...+..  .....++.++|+||++.|+++-
T Consensus       476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~--P~~aEpnGiafSPD~ktLfV~v  549 (592)
T 4a9v_A          476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG--PIGCEVTGISFSPDQKTLFVGI  549 (592)
T ss_dssp             CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEEC--CTTCEEEEEEECTTSSEEEEEE
T ss_pred             CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeC--CCCccccCCEECCCCCEEEEEE
Confidence            34567999999987774321            12577777777877655542  1346799999999999887753

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=89.48  E-value=3.1  Score=37.48  Aligned_cols=69  Identities=16%  Similarity=0.313  Sum_probs=45.9

Q ss_pred             ceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeec-------CCCeeEecC-CCcEEEEee----CCeEEEEecc
Q 023822          123 RVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ-------GRPAAAYDD-QGLVFAVAF----GGYIRMFDAR  190 (276)
Q Consensus       123 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~-~~~~l~~~~----d~~i~~~d~~  190 (276)
                      .+.+++..++..++++-+.|+++|+|++.+++++......       ........| .+.++.+-.    +|..++|.+.
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~~~~~~~~~~~~~~~~~~~~~~i~v~~s~~~~g~F~~~~~~  316 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQTILPLQSFPYLTSDHTTNSFIALYYPDNSHGSFSIYKLN  316 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECCCCCCCSCCCCCEEECSSSTTEEEEEECCSSSCEEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecccccCCccccccccccCCCcccEEEEEEcCCCCcEEEEEEEe
Confidence            4667777788889999999999999999999988876221       111222333 233333322    5788888765


Q ss_pred             c
Q 023822          191 K  191 (276)
Q Consensus       191 ~  191 (276)
                      .
T Consensus       317 ~  317 (950)
T 4gq2_M          317 A  317 (950)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=88.32  E-value=8.1  Score=30.52  Aligned_cols=110  Identities=10%  Similarity=-0.005  Sum_probs=54.2

Q ss_pred             CCcEEEEEEcC-CCCEEEEeecCC----eEEEEEccCCeeeeeeee--------------eeeceEEEEEecc--CCeEE
Q 023822           34 NGRISSMDFHK-SSSYLVTASDDE----SIRLYDVTAATCLKTINS--------------KKYGVDLVCFTSH--PTTVI   92 (276)
Q Consensus        34 ~~~v~~~~~~~-~~~~l~~~~~d~----~i~iwd~~~~~~~~~~~~--------------~~~~v~~~~~~~~--~~~l~   92 (276)
                      ...|.+|++.| +...|..+...|    .|...+ +.++.-..+..              ....|..+++.|.  ...+.
T Consensus        54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~  132 (394)
T 3b7f_A           54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY  132 (394)
T ss_dssp             TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred             CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence            35699999998 334454555444    344332 23322222211              1124778888863  45666


Q ss_pred             EeccCCCCCceEEEEccCCceeeeecc-------------------cCcceEEEEeccC-CCEEEEeeCCCeEEEE
Q 023822           93 YSSKNGWDESLRLLSLHDNKYLRYFKG-------------------HHDRVVSLSLCSS-KDCFISGSLDRTVLLW  148 (276)
Q Consensus        93 ~~~~~~~d~~i~~~d~~~~~~~~~~~~-------------------~~~~i~~~~~~~~-~~~l~~~~~d~~i~iw  148 (276)
                      ++..   .+.|...+ ..++.-..+..                   ....+.+|.++|. ...+..+..++.|...
T Consensus       133 ~g~~---~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s  204 (394)
T 3b7f_A          133 AGTS---PQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFES  204 (394)
T ss_dssp             EEEE---TTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEE
T ss_pred             EEec---CCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEE
Confidence            6654   55554442 12222111110                   1235788999874 3445555545545443

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=87.18  E-value=14  Score=32.01  Aligned_cols=69  Identities=7%  Similarity=0.073  Sum_probs=43.7

Q ss_pred             ceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecCCC---eeEecC---C-------CcEEEEee---CCeEEE
Q 023822          123 RVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP---AAAYDD---Q-------GLVFAVAF---GGYIRM  186 (276)
Q Consensus       123 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---~~~~~~---~-------~~~l~~~~---d~~i~~  186 (276)
                      .|.++.+  +..++++-+.|.++|+|++++++++........+   .-...|   .       +.++++-.   +|..++
T Consensus       223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL~~~~~~~~s~L~~~~~~~~~Lrl~~~~lv~y~P~~~G~Fk~  300 (729)
T 3f7f_A          223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDMVSQSDSDPSHFRKVEAVGEYLSLYNNTLVTLLPLENGLFQM  300 (729)
T ss_dssp             EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEETTTTSCCCSSCCCCCCSCCCCEEESSSEEEEEETTTTCEEEE
T ss_pred             eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeeccccCccccccccCcccCcchhHhheeeEEEEEecCCCCeEEE
Confidence            3555444  4679999999999999999999988777332111   001122   1       24444433   589999


Q ss_pred             EecccCC
Q 023822          187 FDARKYE  193 (276)
Q Consensus       187 ~d~~~~~  193 (276)
                      |.+....
T Consensus       301 ~~l~~~~  307 (729)
T 3f7f_A          301 GTLLVDS  307 (729)
T ss_dssp             EEEEC--
T ss_pred             EEEEEcC
Confidence            9986544

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=80.95  E-value=1.8  Score=39.90  Aligned_cols=38  Identities=32%  Similarity=0.463  Sum_probs=32.3

Q ss_pred             cEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeee
Q 023822           36 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN   73 (276)
Q Consensus        36 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~   73 (276)
                      .+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus       239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D  276 (1139)
T 4fhn_B          239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  276 (1139)
T ss_dssp             CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred             eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence            45566777788899999999999999999999988754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	276
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-16
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-12
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-09
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-15
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-15
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-14
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.001
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.001
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.002
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.004
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	9e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.002
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.003
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.002
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.002
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.003
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-05
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	4e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	7e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.002

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.4 bits (181), Expect = 5e-16
 Identities = 23/130 (17%), Positives = 50/130 (38%), Gaps = 3/130 (2%)

Query: 21  LQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVD 80
           ++      +F  +   I+++ F  + +   T SDD + RL+D+ A   L T +       
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG 272

Query: 81  LVCFTSHPT-TVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISG 139
           +   +   +  ++ +     D +  +             GH +RV  L +        +G
Sbjct: 273 ITSVSFSKSGRLLLAG--YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330

Query: 140 SLDRTVLLWD 149
           S D  + +W+
Sbjct: 331 SWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.8 bits (156), Expect = 1e-12
 Identities = 56/291 (19%), Positives = 90/291 (30%), Gaps = 50/291 (17%)

Query: 24  MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVC 83
           M    + R +  +I +M +   S  LV+AS D  + ++D      +  I  +   V    
Sbjct: 45  MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104

Query: 84  FTSHPTTVIYSSKNG------------------------------------------WDE 101
           +      V     +                                            D 
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT 164

Query: 102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV 161
           +  L  +   +    F GH   V+SLSL      F+SG+ D +  LWD R   C+     
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224

Query: 162 QGRP--AAAYDDQGLVFAVA-FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG 218
                 A  +   G  FA        R+FD R  ++           I     V FS  G
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN--IICGITSVSFSKSG 282

Query: 219 RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG 269
           RL+L    + + +V D+ +              N       + +GM V +G
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVL---AGHDNRVSCLGVTDDGMAVATG 330

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.0 bits (141), Expect = 1e-10
 Identities = 28/164 (17%), Positives = 58/164 (35%), Gaps = 4/164 (2%)

Query: 28  MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 87
            +F  + G + S+     +   V+ + D S +L+DV    C +T    +  ++ +CF  +
Sbjct: 178 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN 237

Query: 88  PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLL 147
                  S +     L  L                 + S+S   S    ++G  D    +
Sbjct: 238 GNAFATGSDDATC-RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296

Query: 148 WDQRAEKCQGLLRVQGRP---AAAYDDQGLVFAVAFGGYIRMFD 188
           WD       G+L             DD   V   ++  ++++++
Sbjct: 297 WDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.2 bits (126), Expect = 8e-09
 Identities = 23/141 (16%), Positives = 53/141 (37%), Gaps = 9/141 (6%)

Query: 99  WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL 158
            D S +L  + +    + F GH   + ++    + + F +GS D T  L+D RA++    
Sbjct: 204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263

Query: 159 LRVQGRPAAAYD-----DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
                               L+ A        ++DA K ++       + G  +  + + 
Sbjct: 264 YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR----AGVLAGHDNRVSCLG 319

Query: 214 FSNDGRLMLLTTMEGHIHVLD 234
            ++DG  +   + +  + + +
Sbjct: 320 VTDDGMAVATGSWDSFLKIWN 340

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.1 bits (175), Expect = 3e-15
 Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 3/126 (2%)

Query: 24  MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVC 83
            E   S         +    K   +L++ S D++I+++DV+   CL T+      V  V 
Sbjct: 195 PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVL 254

Query: 84  FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR 143
           F S    ++  +    D++LR+    + + ++    H   V SL    +    ++GS+D+
Sbjct: 255 FHSGGKFILSCA---DDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ 311

Query: 144 TVLLWD 149
           TV +W+
Sbjct: 312 TVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.7 bits (174), Expect = 4e-15
 Identities = 42/303 (13%), Positives = 93/303 (30%), Gaps = 69/303 (22%)

Query: 29  SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP 88
           +   +   ++ + FH   S +V+AS+D +I+++D       +T+      V  + F    
Sbjct: 12  ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 71

Query: 89  TTVIYSSK---------------------------------------NGWDESLRLLSLH 109
             +   S                                           D+++++  + 
Sbjct: 72  KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131

Query: 110 DNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP---- 165
               ++ F GH + V  +          S S D+TV +W    ++C+  LR         
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191

Query: 166 -------------------AAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDI 206
                                +      + + +    I+M+D          + ++ G  
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC----LMTLVGHD 247

Query: 207 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFV 266
           +    V F + G+ +L    +  + V D      + T N      +      F     +V
Sbjct: 248 NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN---AHEHFVTSLDFHKTAPYV 304

Query: 267 ISG 269
           ++G
Sbjct: 305 VTG 307

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.8 bits (164), Expect = 8e-14
 Identities = 23/188 (12%), Positives = 70/188 (37%), Gaps = 20/188 (10%)

Query: 21  LQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVD 80
           +Q+     +F  +   +  +  ++  + + + S+D+++R++ V    C   +   ++ V+
Sbjct: 130 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 189

Query: 81  LVCFTSHPTTVIYSSKNGW-----------------DESLRLLSLHDNKYLRYFKGHHDR 123
            + +    +    S   G                  D+++++  +     L    GH + 
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 249

Query: 124 VVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVFAVAFG 181
           V  +   S     +S + D+T+ +WD + ++C   L        +  +            
Sbjct: 250 VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 309

Query: 182 -GYIRMFD 188
              +++++
Sbjct: 310 DQTVKVWE 317

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.1 bits (128), Expect = 5e-09
 Identities = 21/119 (17%), Positives = 46/119 (38%), Gaps = 4/119 (3%)

Query: 37  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
           I+ + F    +Y++T +DD+ IR+YD      L  ++    GV  + +      ++ S  
Sbjct: 16  ITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY--AHGGILVSGS 71

Query: 97  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC 155
                 +  +      ++        R + +    +    ++GS D T+ +W    E  
Sbjct: 72  TDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS 130

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 4e-05
 Identities = 16/131 (12%), Positives = 45/131 (34%), Gaps = 5/131 (3%)

Query: 117 FKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGL 174
            +GH   V++  L    +  I+G+ D+ + ++D   +K    L        A  Y   G+
Sbjct: 8   LRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI 66

Query: 175 VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD 234
           + +        +      +     +F           +    + + ++  + +  +HV  
Sbjct: 67  LVSG--STDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 124

Query: 235 SFRGTLLSTYN 245
             + + +  + 
Sbjct: 125 LPKESSVPDHG 135

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.6 bits (85), Expect = 0.001
 Identities = 9/73 (12%), Positives = 22/73 (30%), Gaps = 5/73 (6%)

Query: 78  GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR-YFKGHHDRVVSLSLCSSKDCF 136
            +  +        ++ S   G +    + +L   K +        D++ S++    K   
Sbjct: 283 NLSAITTFYVSDNILVS---GSENQFNIYNLRSGKLVHANILKDADQIWSVNF-KGKTLV 338

Query: 137 ISGSLDRTVLLWD 149
            +   D    L  
Sbjct: 339 AAVEKDGQSFLEI 351

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 1e-08
 Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 12/135 (8%)

Query: 21  LQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVD 80
             + E   +   +   I+ + +      +V+ S D +IRL+D+    CL+ +   +  V 
Sbjct: 165 TSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR 222

Query: 81  LVCFTSHPTTVIYSSKNG----WD--ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD 134
             C       ++  + +G    WD   +L   +      LR    H  RV  L     + 
Sbjct: 223 --CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ- 279

Query: 135 CFISGSLDRTVLLWD 149
             +S S D T+L+WD
Sbjct: 280 -IVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 3e-06
 Identities = 30/159 (18%), Positives = 62/159 (38%), Gaps = 7/159 (4%)

Query: 24  MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVC 83
            ++ +       R +         Y+V+AS D +I++++ +    ++T+N  K G+  + 
Sbjct: 126 TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ 185

Query: 84  FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR 143
           +      V+  S    D ++RL  +     LR  +GH +  +   +       +SG+ D 
Sbjct: 186 Y--RDRLVVSGS---SDNTIRLWDIECGACLRVLEGHEE--LVRCIRFDNKRIVSGAYDG 238

Query: 144 TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG 182
            + +WD  A                 +  G VF + F  
Sbjct: 239 KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE 277

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 25/228 (10%), Positives = 71/228 (31%), Gaps = 19/228 (8%)

Query: 22  QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDL 81
            S++      + +  +  + +      +V+   D +I+++D     C + +      V  
Sbjct: 3   HSLQRIHCRSETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLC 60

Query: 82  VCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL 141
           + +         S        +    + +          H          +    ++ S 
Sbjct: 61  LQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHL-------RFNNGMMVTCSK 113

Query: 142 DRTVLLWDQRAEKC----QGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPF 197
           DR++ +WD  +       + L+  +        D   + + +    I++++    E    
Sbjct: 114 DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF--- 170

Query: 198 DIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN 245
            + ++ G      +       RL++  + +  I + D   G  L    
Sbjct: 171 -VRTLNGH--KRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLE 215

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 2e-08
 Identities = 25/142 (17%), Positives = 56/142 (39%), Gaps = 10/142 (7%)

Query: 40  MDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW 99
                   ++V+ S D SIR++DV    C+ T+   +              ++  +    
Sbjct: 181 YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT--SGMELKDNILVSGN---A 235

Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGL 158
           D ++++  +   + L+  +G +    +++    +K+  I+ S D TV LWD +  +    
Sbjct: 236 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRN 295

Query: 159 LRVQGRPAAAYDDQGLVFAVAF 180
           L             G+V+ +  
Sbjct: 296 LVTLESGG----SGGVVWRIRA 313

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (122), Expect = 2e-08
 Identities = 32/229 (13%), Positives = 75/229 (32%), Gaps = 19/229 (8%)

Query: 42  FHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE 101
                + +V+ SDD +++++      CL+T+     GV       +      + +     
Sbjct: 23  LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVW 82

Query: 102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV 161
                  +          +        +   +   +SGS D T+ +WD    +C  +L  
Sbjct: 83  -------NAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMG 135

Query: 162 QGRPAAAYDDQGLVFA-VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRL 220
                      G      A+   ++++D          + ++ G  +    ++F  DG  
Sbjct: 136 HVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETC----LHTLQGHTNRVYSLQF--DGIH 189

Query: 221 MLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG 269
           ++  +++  I V D   G  + T        +         +   ++SG
Sbjct: 190 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS-----GMELKDNILVSG 233

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 2e-07
 Identities = 23/138 (16%), Positives = 54/138 (39%), Gaps = 13/138 (9%)

Query: 21  LQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVD 80
           +++     +   +    S M+     + LV+ + D +++++D+    CL+T+        
Sbjct: 204 VETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQS 261

Query: 81  LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFK-----GHHDRVVSLSLCSSKDC 135
            V         + +S    D +++L  L   +++R        G    V  +   ++K  
Sbjct: 262 AVTCLQFNKNFVITS--SDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLV 319

Query: 136 FISGSLDRT----VLLWD 149
              GS + T    +L+ D
Sbjct: 320 CAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 5e-05
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR 160
           K  +  KGH D V++  L    +  +SGS D T+ +W     KC   L 
Sbjct: 7   KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV 54

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.3 bits (121), Expect = 4e-08
 Identities = 39/192 (20%), Positives = 77/192 (40%), Gaps = 31/192 (16%)

Query: 28  MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSK-------KYGVD 80
           ++    +G  +         Y+   S D ++R++D      ++ ++S+       K  V 
Sbjct: 199 LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVY 258

Query: 81  LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHH------------DRVVSLS 128
            V FT    +V+  S    D S++L +L +       K  +            D V+S++
Sbjct: 259 SVVFTRDGQSVVSGS---LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVA 315

Query: 129 LCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR--------VQGRPAAAYDDQGLVFAVAF 180
              + +  +SGS DR VL WD+++     +L+        V     ++   +  VFA   
Sbjct: 316 TTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 375

Query: 181 G-GYIRMFDARK 191
           G    R++  +K
Sbjct: 376 GDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.3 bits (108), Expect = 2e-06
 Identities = 16/134 (11%), Positives = 39/134 (29%), Gaps = 51/134 (38%)

Query: 22  QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDL 81
            S    +++  +   + S+   ++  Y+++ S D  +  +D  +   L            
Sbjct: 296 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLM---------- 345

Query: 82  VCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC------ 135
                                               +GH + V+S+++ +          
Sbjct: 346 -----------------------------------LQGHRNSVISVAVANGSSLGPEYNV 370

Query: 136 FISGSLDRTVLLWD 149
           F +GS D    +W 
Sbjct: 371 FATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 5e-06
 Identities = 46/268 (17%), Positives = 97/268 (36%), Gaps = 31/268 (11%)

Query: 32  DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVD---------LV 82
           D+   +  + F     YL T  +  + ++Y V+  + +  ++                  
Sbjct: 60  DHTSVVCCVKFSNDGEYLATGCNK-TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118

Query: 83  CFTSHPTTVIYSSKN------GWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF 136
               +  +V +S           D  +R+  + + K +   +GH   + SL    S D  
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178

Query: 137 ISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGY---IRMFDARK-- 191
           +SGS DRTV +WD R  +C   L ++          G    +A G     +R++D+    
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238

Query: 192 -YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP-- 248
             E+   +  S  G       V F+ DG+ ++  +++  + + +       S        
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 298

Query: 249 -------VSRNSTLEASFSPEGMFVISG 269
                    ++  L  + +    +++SG
Sbjct: 299 TCEVTYIGHKDFVLSVATTQNDEYILSG 326

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.1 bits (115), Expect = 2e-07
 Identities = 33/249 (13%), Positives = 62/249 (24%), Gaps = 13/249 (5%)

Query: 37  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSK---KYGVDLVCFTSHPTTVIY 93
           IS +    S S L+  S D S+ +Y          +      K+ +    F  +    IY
Sbjct: 14  ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIY 73

Query: 94  SSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE 153
                 +     L    +          +  +        D  I+ S D  + + D R  
Sbjct: 74  VGTVQGEILKVDLIGSPSFQ-ALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNY 132

Query: 154 KCQGLLRVQGRPAAAYDDQGLVFAVAFG---------GYIRMFDARKYEKGPFDIFSVGG 204
               +               +                  ++ F     E     I   G 
Sbjct: 133 GDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGL 192

Query: 205 DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM 264
                +V     +      ++++G + V            + +   R   L    +    
Sbjct: 193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252

Query: 265 FVISGRVSP 273
            V S   SP
Sbjct: 253 PVNSIEFSP 261

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 7/69 (10%), Positives = 23/69 (33%), Gaps = 6/69 (8%)

Query: 112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDD 171
           + ++  +   D +  + +  SK   +  S D ++ ++    +     L        +   
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLL------QSLRY 55

Query: 172 QGLVFAVAF 180
           +  +    F
Sbjct: 56  KHPLLCCNF 64

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 10/107 (9%), Positives = 37/107 (34%), Gaps = 8/107 (7%)

Query: 21  LQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVD 80
            +   + +   +    ++S++F     +L TA  D  I  +++     +K   +K     
Sbjct: 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF-AKFNEDS 296

Query: 81  LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSL 127
           +V        +  ++ +   ++       +    +  + +   +  +
Sbjct: 297 VVKIACSDNILCLATSDDTFKT-------NAAIDQTIELNASSIYII 336

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (84), Expect = 0.001
 Identities = 12/130 (9%), Positives = 34/130 (26%), Gaps = 13/130 (10%)

Query: 40  MDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSK------KYGVDLVCFTSHPTTVIY 93
               K       +S D  + +            + +      +  +          ++ +
Sbjct: 200 ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEF 259

Query: 94  SSK------NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLL 147
           S +       G D  +   +L   K ++ F   +     + +  S +     + D T   
Sbjct: 260 SPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIACSDNILCLATSDDTFKT 318

Query: 148 WDQRAEKCQG 157
                +  + 
Sbjct: 319 NAAIDQTIEL 328

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.3 bits (109), Expect = 2e-06
 Identities = 24/212 (11%), Positives = 53/212 (25%), Gaps = 22/212 (10%)

Query: 36  RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSS 95
                D+   + + VT  D   I L D +       +++  Y V +   ++    +    
Sbjct: 22  TQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIG 80

Query: 96  KNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD---CFISGSLDRTVLLWDQRA 152
           ++G    + L             G   R +  S     +              ++ D   
Sbjct: 81  RDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET 140

Query: 153 EKCQGLLRVQGRP---------------AAAYDDQGLVFAVAFGGYIRMFDARKYEKGPF 197
            + + +   +G                  A++     +  V   G I + D         
Sbjct: 141 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKT 200

Query: 198 DIFSVGGDISDANVVKFSNDGRLMLLTTMEGH 229
              S    + D          R  +      +
Sbjct: 201 TEISAERFLHD---GGLDGSHRYFITAANARN 229

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.0 bits (107), Expect = 2e-06
 Identities = 16/214 (7%), Positives = 54/214 (25%), Gaps = 48/214 (22%)

Query: 37  ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
           IS   ++K  + +    ++  + +Y+ +    ++                          
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQ-------------------------- 43

Query: 97  NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
                            +   K H+ +V  +      +  ++   DR   +W  +    +
Sbjct: 44  -----------------VHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK 86

Query: 157 GLLRVQGRPAAAYD-----DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANV 211
             L +     AA       ++      +    I +    +               S    
Sbjct: 87  PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLS 146

Query: 212 VKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN 245
           + +  +  L+   + +    +  ++   +     
Sbjct: 147 LDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPA 180

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.4 bits (95), Expect = 7e-05
 Identities = 20/131 (15%), Positives = 48/131 (36%), Gaps = 3/131 (2%)

Query: 29  SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP 88
             +++NG+++ +D+   S+ +VT   D +  ++ +   T   T+   +      C    P
Sbjct: 46  ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP 105

Query: 89  --TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDR-VVSLSLCSSKDCFISGSLDRTV 145
                   S +           +D    ++ K      V+SL    +     +GS D   
Sbjct: 106 NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC 165

Query: 146 LLWDQRAEKCQ 156
            ++    ++ +
Sbjct: 166 RIFSAYIKEVE 176

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 14/133 (10%), Positives = 34/133 (25%), Gaps = 9/133 (6%)

Query: 21  LQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVD 80
                   +       + ++ F   SS +    D     L+   +A    +   +     
Sbjct: 230 ADKKMAVATLASETLPLLAVTFITESSLVAAGHDC-FPVLFTYDSAAGKLSFGGRLDVPK 288

Query: 81  LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLC----SSKDCF 136
                       + +    D+                  H + V  +S+     +    F
Sbjct: 289 QSSQRGLTARERFQN---LDKKASS-EGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQF 344

Query: 137 ISGSLDRTVLLWD 149
            +  +D  + +WD
Sbjct: 345 CTTGMDGGMSIWD 357

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (106), Expect = 3e-06
 Identities = 9/111 (8%), Positives = 23/111 (20%), Gaps = 46/111 (41%)

Query: 39  SMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG 98
           S+ F     + V+   D  +  +       +                             
Sbjct: 270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-------------------------- 303

Query: 99  WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD 149
                                    V+S  +       ++GS D+   +++
Sbjct: 304 --------------------KESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 3e-05
 Identities = 22/281 (7%), Positives = 62/281 (22%), Gaps = 48/281 (17%)

Query: 32  DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTI-----NSKKYGVDLVCFTS 86
           ++   + ++     + ++ T      ++++D++       +      ++   +       
Sbjct: 49  NHGEVVCAVTISNPTRHVYTGGKG-CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107

Query: 87  HPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVL 146
              T+I   +        L +                        SK CF   S     +
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167

Query: 147 LWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDI 206
                    +         +              G    +      E            I
Sbjct: 168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQI 227

Query: 207 SDANV--------------------------------------VKFSNDGRLMLLTTMEG 228
                                                      +KF+  G+  + T  + 
Sbjct: 228 FSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDN 287

Query: 229 HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG 269
            ++   +  G  +          +S L    S +  ++++G
Sbjct: 288 LLNAWRTPYGASIFQSK----ESSSVLSCDISVDDKYIVTG 324

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 5e-04
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 33  YNGRISSMDFHKSSSYLVTASDDESIRLYDV 63
            +  + S D      Y+VT S D+   +Y+V
Sbjct: 305 ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.9 bits (104), Expect = 4e-06
 Identities = 12/78 (15%), Positives = 32/78 (41%), Gaps = 5/78 (6%)

Query: 28  MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTS 86
           +    ++G +  + +    + + +AS D++I++++V      KTI    +     +    
Sbjct: 232 LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW 291

Query: 87  HPTTVIYSSKNG----WD 100
               ++  S NG     +
Sbjct: 292 TKQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.0 bits (86), Expect = 7e-04
 Identities = 9/73 (12%), Positives = 17/73 (23%)

Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 159
             S+  + +        +  H  +        S     SG +   V +WD          
Sbjct: 37  GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT 96

Query: 160 RVQGRPAAAYDDQ 172
            +        D  
Sbjct: 97  TIPVFSGPVKDIS 109

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.8 bits (83), Expect = 0.002
 Identities = 30/257 (11%), Positives = 68/257 (26%), Gaps = 8/257 (3%)

Query: 21  LQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVD 80
           + S+     + +++ + +      S  Y  +     ++R++D T  T +       +   
Sbjct: 45  VGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGP 104

Query: 81  LVCFTSHP--TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFIS 138
           +   +       +    +         L                        S     IS
Sbjct: 105 VKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIIS 164

Query: 139 GSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKG--- 195
           GS D TV +++    K +       +   +          A  G            G   
Sbjct: 165 GSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKT 224

Query: 196 ---PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN 252
                D             + +S DG  +   + +  I + +     +  T  V     +
Sbjct: 225 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIED 284

Query: 253 STLEASFSPEGMFVISG 269
             L   ++ + +  IS 
Sbjct: 285 QQLGIIWTKQALVSISA 301

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 35.6 bits (80), Expect = 0.004
 Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 6/78 (7%)

Query: 116 YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP-----AAAYD 170
               H   V  L+         S S D+T+ +W+    K +  + V  R         + 
Sbjct: 233 KNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT 292

Query: 171 DQGLVFAVAFGGYIRMFD 188
            Q LV +++  G+I   +
Sbjct: 293 KQALV-SISANGFINFVN 309

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.8 bits (101), Expect = 9e-06
 Identities = 9/67 (13%), Positives = 22/67 (32%), Gaps = 1/67 (1%)

Query: 34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTI-NSKKYGVDLVCFTSHPTTVI 92
          N  I+++        L +A  +  I  +D++     +   +     +  +  TS      
Sbjct: 12 NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFT 71

Query: 93 YSSKNGW 99
           S  +  
Sbjct: 72 VSWDDHL 78

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.3 bits (97), Expect = 3e-05
 Identities = 7/49 (14%), Positives = 15/49 (30%)

Query: 112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR 160
              +   GH+  + +LS  +      S   +  +  WD        +  
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP 51

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.5 bits (95), Expect = 5e-05
 Identities = 7/54 (12%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 98  GWDESLRLLSLHDNK--YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD 149
             D S+ + +++      +     H    V+  +  ++   +S   D  +  W+
Sbjct: 243 SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 43.7 bits (101), Expect = 1e-05
 Identities = 21/180 (11%), Positives = 43/180 (23%), Gaps = 12/180 (6%)

Query: 23  SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLV 82
                 +    N    +  F   S  L   S        D         + SK + + L+
Sbjct: 167 EGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLI 226

Query: 83  CFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF-----------KGHHDRVVSLSLCS 131
             + +PT ++  S         L  ++                   +             
Sbjct: 227 PGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGE 286

Query: 132 SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK 191
               +        +L +D +  K   +         + D + ++      G I  F   K
Sbjct: 287 FAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVR-KDDGKIYTFPLEK 345

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 4/43 (9%), Positives = 14/43 (32%)

Query: 31  RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN 73
            +    ++ +        ++   DD  I  + +      +T+ 
Sbjct: 311 TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVE 353

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 36.4 bits (82), Expect = 0.003
 Identities = 13/136 (9%), Positives = 31/136 (22%), Gaps = 8/136 (5%)

Query: 34  NGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT----CLKTINSKKYGVDLVCFTSHPT 89
            G  +       S        D +      +         + I   +  + +     H  
Sbjct: 227 PGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGE 286

Query: 90  TVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD 149
              Y         L    +   K         + +  L L + +   +    D  +  + 
Sbjct: 287 FAAYYQGAPEKGVLLKYDVKTRKV----TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFP 342

Query: 150 QRAEKCQGLLRVQGRP 165
               + +  +    RP
Sbjct: 343 LEKPEDERTVETDKRP 358

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.5 bits (98), Expect = 3e-05
 Identities = 19/198 (9%), Positives = 47/198 (23%), Gaps = 24/198 (12%)

Query: 34  NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIY 93
           +  I S+     +S+ V+ S D  ++++D          +             H   +  
Sbjct: 14  DADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQA 71

Query: 94  SSKN----------GWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR 143
             ++           +   L    +      +        ++   +       +      
Sbjct: 72  IERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN 131

Query: 144 TVLLWDQRAE-KCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSV 202
             LL  +      +G   +      A +   L             +     +    + S 
Sbjct: 132 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLT-----------LNWSPTLELQGTVESP 180

Query: 203 GGDISDANVVKFSNDGRL 220
                 A  V  S  G +
Sbjct: 181 MTPSQFATSVDISERGLI 198

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (83), Expect = 0.002
 Identities = 17/129 (13%), Positives = 39/129 (30%), Gaps = 14/129 (10%)

Query: 22  QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDL 81
            S +  +    ++  + S+ F+ S   L +A  D  +R +DV     + T+N     ++ 
Sbjct: 277 HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE- 335

Query: 82  VCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL 141
                    +             +  +   K             S       +      L
Sbjct: 336 ----IEEDILAVDEHGDSLAEPGVFDVKFLK---------KGWRSGMGADLNESLCCVCL 382

Query: 142 DRTVLLWDQ 150
           DR++  + +
Sbjct: 383 DRSIRWFRE 391

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.2 bits (97), Expect = 3e-05
 Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 4/71 (5%)

Query: 40  MDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN--SKKYGVDLVCFTSHPTTVIYSSKN 97
                 S    T   D +IR++DVT + C++      ++ G   V   +     I S   
Sbjct: 257 ALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISL-- 314

Query: 98  GWDESLRLLSL 108
             D +L    L
Sbjct: 315 SLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 5e-05
 Identities = 10/55 (18%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 98  GWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLC---SSKDCFISGSLDRTVLLWD 149
           G D ++R+  +  +K ++ +     ++ +  +    +     IS SLD T+  ++
Sbjct: 270 GADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (90), Expect = 3e-04
 Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 6/61 (9%)

Query: 134 DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP------AAAYDDQGLVFAVAFGGYIRMF 187
             F +   D T+ +WD    KC     +  +              G + +++  G +  +
Sbjct: 264 QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323

Query: 188 D 188
           +
Sbjct: 324 E 324

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.5 bits (95), Expect = 6e-05
 Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 98  GWDESLRLLSLHDN-KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD 149
             D ++ + S+    K ++    H D V +L    +    +S   D  +  W+
Sbjct: 234 SLDTNIFIYSVKRPMKIIKALNAHKDGVNNLL-WETPSTLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.8 bits (88), Expect = 4e-04
 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 4/40 (10%)

Query: 110 DNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD 149
            ++ L+   GH+  + +L++       ISGS D  ++ W 
Sbjct: 2   HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWS 37

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.5 bits (82), Expect = 0.002
 Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 5/79 (6%)

Query: 28  MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDV-TAATCLKTINSKKYGVDLVCFTS 86
            +         + +       + T S D +I +Y V      +K +N+ K GV+ + +  
Sbjct: 209 NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLW-- 266

Query: 87  HPTTVIYSSKNGWDESLRL 105
              + + SS  G D  ++ 
Sbjct: 267 ETPSTLVSS--GADACIKR 283

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.1 bits (81), Expect = 0.003
 Identities = 9/83 (10%), Positives = 24/83 (28%), Gaps = 3/83 (3%)

Query: 109 HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD-QRAEKCQGLLRVQGRP-- 165
                +           +      +D   +GSLD  + ++  +R  K    L        
Sbjct: 203 FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVN 262

Query: 166 AAAYDDQGLVFAVAFGGYIRMFD 188
              ++    + +      I+ ++
Sbjct: 263 NLLWETPSTLVSSGADACIKRWN 285

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 41.3 bits (95), Expect = 6e-05
 Identities = 16/243 (6%), Positives = 46/243 (18%), Gaps = 29/243 (11%)

Query: 28  MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKY--GVDLVCFT 85
            +       + +                  + ++        K + +      V L+   
Sbjct: 94  FAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAA 153

Query: 86  SHPTTVIYSSKNGW-----DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFI--- 137
              +  +             +    L L +     Y                +   +   
Sbjct: 154 DDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTI 213

Query: 138 -----------SGSLDRTVLLWDQRAEKCQGLLRVQGR---PAAAYDDQGLVFAVAFGGY 183
                      +  L    L  D +  K                    +           
Sbjct: 214 ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNR 273

Query: 184 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLST 243
           +  +D ++ +       ++         V F   G  + L      + V +      +  
Sbjct: 274 LAKYDLKQRK--LIKAANLDHTYYC---VAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKN 328

Query: 244 YNV 246
             +
Sbjct: 329 IKL 331

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 39.2 bits (90), Expect = 4e-04
 Identities = 17/109 (15%), Positives = 34/109 (31%), Gaps = 8/109 (7%)

Query: 164 RPAAAYDDQGLVFAVAFG-GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLML 222
           +     D   L        G I + D    +     +   G      ++ + S  GR +L
Sbjct: 23  KQLNDLDLPNLFSVTLRDAGQIALVDGDSKK--IVKVIDTG---YAVHISRMSASGRYLL 77

Query: 223 LTTMEGHIHVLDSFRGTLLSTYNVKPVS--RNSTLEASFSPEGMFVISG 269
           +   +  I ++D +         +K     R+         E  + I+G
Sbjct: 78  VIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAG 126

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.4 bits (88), Expect = 7e-04
 Identities = 19/203 (9%), Positives = 58/203 (28%), Gaps = 22/203 (10%)

Query: 48  YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS 107
           + VT  D   I L D  +   +K I++  Y V +   ++    ++   ++   + + L +
Sbjct: 34  FSVTLRDAGQIALVDGDSKKIVKVIDT-GYAVHISRMSASGRYLLVIGRDARIDMIDLWA 92

Query: 108 LHDN--KYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR 164
                   ++          S       +             + D    + + ++  +G 
Sbjct: 93  KEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM 152

Query: 165 P---------------AAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDA 209
                            A+++    +  V   G + + + +  +            ++D 
Sbjct: 153 TVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLAD- 211

Query: 210 NVVKFSNDGRLMLLTTMEGHIHV 232
               + +  R  +      +   
Sbjct: 212 --GGWDSSHRYFMTAANNSNKVA 232

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.6 bits (88), Expect = 5e-04
 Identities = 13/148 (8%), Positives = 30/148 (20%), Gaps = 10/148 (6%)

Query: 33  YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVI 92
                      K        +    +   D+                      +   T  
Sbjct: 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA 255

Query: 93  YSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA 152
           +         L    L  N  ++          S+++ +       G     +  +D   
Sbjct: 256 FG----AYNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET 310

Query: 153 EKCQGLLRVQGRPAAAYDDQGLVFAVAF 180
            + +G + + G          L     F
Sbjct: 311 LEKKGQVDLPGNA-----SMSLASVRLF 333

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 19/203 (9%), Positives = 44/203 (21%), Gaps = 16/203 (7%)

Query: 48  YLVTASDDESIRLYDVTAATCLKTINSKKYG--VDLVCFTSHPTTVIYSSKNGWDESLRL 105
           Y++  +  + + + D       K I     G    +            +      ESL  
Sbjct: 3   YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYAT--VNKSESLVK 60

Query: 106 LSLHDNKYLRYFKGHH-----DRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR 160
           + L   + L              +   +L               + L     +  +  L 
Sbjct: 61  IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120

Query: 161 --VQGRPAAAYDDQGLVFAVAFGG-----YIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
                    A++    +  +A+       Y    D    +     +       S      
Sbjct: 121 DAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETY 180

Query: 214 FSNDGRLMLLTTMEGHIHVLDSF 236
              D   +        +     +
Sbjct: 181 AQPDVLAVWNQHESSGVMATPFY 203

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	276
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.96
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.96
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.94
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.94
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.93
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.92
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.91
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.89
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.88
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.86
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.86
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.84
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.83
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.81
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.74
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.72
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.71
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.64
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.62
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.61
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.58
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.57
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.56
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.56
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.54
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.52
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.5
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.48
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.42
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.34
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.32
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.28
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.18
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.14
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.12
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.04
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.0
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.97
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.86
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.82
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.74
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.66
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.44
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.43
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.11
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.1
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.03
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.98
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.95
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.91
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.9
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.87
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.66
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.59
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.38
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.25
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.06
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.88
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.73
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.59
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.58
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.46
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	96.29
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.19
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.18
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	95.89
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.68
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.65
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.45
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.26
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	95.13
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	95.02
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	95.01
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	94.87
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	93.96
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	90.2
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	89.77

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.2e-43  Score=276.17  Aligned_cols=244  Identities=24%  Similarity=0.329  Sum_probs=212.8

Q ss_pred             cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i  103 (276)
                      ++..++|+||.++|++++|+|++++||+|+.||+|+|||+.+++.+..+..|..+|.+++|+|+++++++++.   |+.+
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~---d~~i  121 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL---DNIC  121 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEET---TCCE
T ss_pred             eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecc---ccee
Confidence            4567789999999999999999999999999999999999999999999999999999999999999999998   9999


Q ss_pred             EEEEccCCce----eeee-----------------------------------------cccCcceEEEEeccCCCEEEE
Q 023822          104 RLLSLHDNKY----LRYF-----------------------------------------KGHHDRVVSLSLCSSKDCFIS  138 (276)
Q Consensus       104 ~~~d~~~~~~----~~~~-----------------------------------------~~~~~~i~~~~~~~~~~~l~~  138 (276)
                      .+|+......    ...+                                         ..+...+....+.+.+.++++
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (340)
T d1tbga_         122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS  201 (340)
T ss_dssp             EEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEE
Confidence            9999654321    1111                                         123345677788888899999


Q ss_pred             eeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEEC
Q 023822          139 GSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFS  215 (276)
Q Consensus       139 ~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~  215 (276)
                      ++.|+.|++||+++++++..+  +...+.+++|+|++.++++++ |+.|++||++....  ........+...+.+++|+
T Consensus       202 ~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~--~~~~~~~~~~~~i~~~~~s  279 (340)
T d1tbga_         202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE--LMTYSHDNIICGITSVSFS  279 (340)
T ss_dssp             EETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--EEEECCTTCCSCEEEEEEC
T ss_pred             eecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccc--ccccccccccCceEEEEEC
Confidence            999999999999999998887  455678999999999888877 89999999987542  2234445667789999999


Q ss_pred             CCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          216 NDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       216 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      |++++|++|+.||.|++||+.+++++..+.   +|.++|++++|+|++++|++|+.||+|
T Consensus       280 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~---~H~~~V~~l~~s~d~~~l~s~s~Dg~v  336 (340)
T d1tbga_         280 KSGRLLLAGYDDFNCNVWDALKADRAGVLA---GHDNRVSCLGVTDDGMAVATGSWDSFL  336 (340)
T ss_dssp             SSSCEEEEEETTSCEEEEETTTCCEEEEEC---CCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred             CCCCEEEEEECCCEEEEEECCCCcEEEEEc---CCCCCEEEEEEeCCCCEEEEEccCCEE
Confidence            999999999999999999999999999998   799999999999999999999999986

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-43  Score=275.47  Aligned_cols=244  Identities=18%  Similarity=0.276  Sum_probs=208.3

Q ss_pred             ccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCC------
Q 023822           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG------   98 (276)
Q Consensus        25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~------   98 (276)
                      ....+|+||.++|++++|+|++++|++|+.||+|+|||+++++++..+..|...|.+++|+|++..++.+....      
T Consensus         8 ~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~   87 (317)
T d1vyhc1           8 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD   87 (317)
T ss_dssp             SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred             CccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccc
Confidence            34567999999999999999999999999999999999999998888887777777777766655554433211      


Q ss_pred             ---------------------------------CCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeE
Q 023822           99 ---------------------------------WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTV  145 (276)
Q Consensus        99 ---------------------------------~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  145 (276)
                                                       .|+.+++||+++++....+..|...+.+++|+|++++|++++.|+.|
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v  167 (317)
T d1vyhc1          88 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV  167 (317)
T ss_dssp             TTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeE
Confidence                                             18899999999999999999999999999999999999999999999


Q ss_pred             EEEeccCceeeeeEe--ecCCCeeEecCC--------------------CcEEEEee-CCeEEEEecccCCCCCeeeeee
Q 023822          146 LLWDQRAEKCQGLLR--VQGRPAAAYDDQ--------------------GLVFAVAF-GGYIRMFDARKYEKGPFDIFSV  202 (276)
Q Consensus       146 ~iwd~~~~~~~~~~~--~~~~~~~~~~~~--------------------~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~  202 (276)
                      ++|++++.+....+.  ...+..+.++|+                    +.++++++ |+.|++||+++++.    +..+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~----~~~~  243 (317)
T d1vyhc1         168 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC----LMTL  243 (317)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEE----EEEE
T ss_pred             EEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcE----EEEE
Confidence            999999988877763  333445555543                    34555555 99999999987654    6667


Q ss_pred             cCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          203 GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       203 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      ..|...|.+++|+|++++|++++.||.|++||+.+++++..+.   +|.++|++++|+|++++|++|+.||+|
T Consensus       244 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~h~~~V~~~~~s~~~~~l~s~s~Dg~i  313 (317)
T d1vyhc1         244 VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN---AHEHFVTSLDFHKTAPYVVTGSVDQTV  313 (317)
T ss_dssp             ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE---CCSSCEEEEEECSSSSCEEEEETTSEE
T ss_pred             eCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEc---CCCCCEEEEEEcCCCCEEEEEeCCCeE
Confidence            7889999999999999999999999999999999999999998   789999999999999999999999975

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.8e-43  Score=272.83  Aligned_cols=251  Identities=16%  Similarity=0.161  Sum_probs=210.1

Q ss_pred             hccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeee--eeeeeeeeceEEEEEeccCCeEEEeccCCC
Q 023822           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL--KTINSKKYGVDLVCFTSHPTTVIYSSKNGW   99 (276)
Q Consensus        22 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~   99 (276)
                      ...+..+.+.+|...|++++|+|+|++||+|+.||+|++||+.+++..  ..+..|..+|.+++|+|+++++++++.+ .
T Consensus        46 ~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~-~  124 (311)
T d1nr0a1          46 GSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEG-R  124 (311)
T ss_dssp             TCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECC-S
T ss_pred             CCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccc-c
Confidence            456677788999999999999999999999999999999999887643  5577888999999999999999998752 2


Q ss_pred             CCceEEEEccCCceeeeecccCcceEEEEeccCCCE-EEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEE
Q 023822          100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC-FISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVF  176 (276)
Q Consensus       100 d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l  176 (276)
                      +..+++|++++++....+.+|...|.+++|+|++++ |++|+.|+.|++||+++.+....+  +...+.++.++|+++++
T Consensus       125 ~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l  204 (311)
T d1nr0a1         125 ERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLF  204 (311)
T ss_dssp             SCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             cccccccccccccccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCcccccc
Confidence            567999999999999999999999999999999884 888999999999999999888777  45567899999999998


Q ss_pred             EEee-CCeEEEEecccCCCCC---eeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCC
Q 023822          177 AVAF-GGYIRMFDARKYEKGP---FDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN  252 (276)
Q Consensus       177 ~~~~-d~~i~~~d~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  252 (276)
                      +++. |+.|++||.+......   .......+|...|++++|+|++++|++|+.||.|+|||++++++++.+..+.....
T Consensus       205 ~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~  284 (311)
T d1nr0a1         205 ASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIED  284 (311)
T ss_dssp             EEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGG
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccc
Confidence            8877 8999999998754211   00112345778999999999999999999999999999999999998874322233


Q ss_pred             ceEEEEECCCCcEEEEecCCCCC
Q 023822          253 STLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       253 ~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      .+.++.|  ++.+|++++.||.+
T Consensus       285 ~~~~~~~--~~~~l~s~s~dG~i  305 (311)
T d1nr0a1         285 QQLGIIW--TKQALVSISANGFI  305 (311)
T ss_dssp             CEEEEEE--CSSCEEEEETTCCE
T ss_pred             eEEEEEe--cCCEEEEEECCCEE
Confidence            4455555  55689999999986

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-41  Score=267.91  Aligned_cols=235  Identities=16%  Similarity=0.254  Sum_probs=213.2

Q ss_pred             eeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccC--CeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEE
Q 023822           29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA--ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL  106 (276)
Q Consensus        29 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~  106 (276)
                      ...+|.+.|.+++|+|++++|++++.||.|++||+..  ++....+..|...+..+.|+|++..+++++.   ++.|++|
T Consensus        92 ~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---d~~i~~~  168 (337)
T d1gxra_          92 DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS---DGNIAVW  168 (337)
T ss_dssp             ECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET---TSCEEEE
T ss_pred             eecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccccccccccccccccccc---ccccccc
Confidence            3467999999999999999999999999999999874  4556677788889999999999999999988   9999999


Q ss_pred             EccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee-CCeE
Q 023822          107 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF-GGYI  184 (276)
Q Consensus       107 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-d~~i  184 (276)
                      ++.+++.......|...|.+++|+++++.+++++.|+.+++||+++++.+..+ +...+.+++|+|++.+++++. |+.+
T Consensus       169 ~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i  248 (337)
T d1gxra_         169 DLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNV  248 (337)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccceeecccccccceEEEEEcccccccceecccccc
Confidence            99999999999999999999999999999999999999999999999888777 456678899999999888777 8999


Q ss_pred             EEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCc
Q 023822          185 RMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM  264 (276)
Q Consensus       185 ~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  264 (276)
                      ++||++..+     ......|...|++++|+|++++|++++.||.|++||+.+++.+..+.    |...|.+++|+|+++
T Consensus       249 ~i~d~~~~~-----~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~s~d~~  319 (337)
T d1gxra_         249 EVLHVNKPD-----KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK----ESSSVLSCDISVDDK  319 (337)
T ss_dssp             EEEETTSSC-----EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE----CSSCEEEEEECTTSC
T ss_pred             ccccccccc-----cccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc----CCCCEEEEEEeCCCC
Confidence            999998755     34556788899999999999999999999999999999999998876    788999999999999


Q ss_pred             EEEEecCCCCC
Q 023822          265 FVISGRVSPFS  275 (276)
Q Consensus       265 ~l~~~~~dg~v  275 (276)
                      +|++|+.||+|
T Consensus       320 ~l~t~s~D~~I  330 (337)
T d1gxra_         320 YIVTGSGDKKA  330 (337)
T ss_dssp             EEEEEETTSCE
T ss_pred             EEEEEeCCCeE
Confidence            99999999976

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.9e-41  Score=266.94  Aligned_cols=234  Identities=13%  Similarity=0.145  Sum_probs=200.2

Q ss_pred             CCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCe--eeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccC
Q 023822           33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD  110 (276)
Q Consensus        33 h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~  110 (276)
                      +..+|+|++|+|++++||+|+.||.|+|||+.+++  .+..+.+|..+|.+++|+|++++|++++.   |+.|++||+.+
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~---D~~i~vWd~~~   82 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT---DRNAYVWTLKG   82 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEET---TSCEEEEEEET
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEEC---CCeEEEEeecc
Confidence            35789999999999999999999999999998775  56778899999999999999999999998   99999999987


Q ss_pred             Cce--eeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE------eecCCCeeEecCCCcEEEEee-C
Q 023822          111 NKY--LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL------RVQGRPAAAYDDQGLVFAVAF-G  181 (276)
Q Consensus       111 ~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~-d  181 (276)
                      +..  ...+.+|...|.+++|+|+++.|++++.|+.|++|++.........      +...+.+++|+|++++|++++ |
T Consensus        83 ~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D  162 (371)
T d1k8kc_          83 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD  162 (371)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             cccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccC
Confidence            754  3455678899999999999999999999999999998765433222      344567899999999998887 9


Q ss_pred             CeEEEEecccCCCC--------------CeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecC
Q 023822          182 GYIRMFDARKYEKG--------------PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK  247 (276)
Q Consensus       182 ~~i~~~d~~~~~~~--------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  247 (276)
                      +.|++||.......              .........|...+.+++|+|+|++|++++.|+.|++||+.+++.+..+.  
T Consensus       163 ~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~--  240 (371)
T d1k8kc_         163 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA--  240 (371)
T ss_dssp             SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE--
T ss_pred             cEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeee--
Confidence            99999998654311              11234556788889999999999999999999999999999999999998  


Q ss_pred             CCCCCceEEEEECCCCcEEEEecCC
Q 023822          248 PVSRNSTLEASFSPEGMFVISGRVS  272 (276)
Q Consensus       248 ~~~~~~v~~~~~s~~g~~l~~~~~d  272 (276)
                       .|..+|.+++|+|++++|++|+++
T Consensus       241 -~~~~~v~s~~fs~d~~~la~g~d~  264 (371)
T d1k8kc_         241 -SETLPLLAVTFITESSLVAAGHDC  264 (371)
T ss_dssp             -CSSCCEEEEEEEETTEEEEEETTS
T ss_pred             -cccccceeeeecCCCCEEEEEcCC
Confidence             688999999999999999887644

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-40  Score=260.03  Aligned_cols=238  Identities=10%  Similarity=0.150  Sum_probs=203.5

Q ss_pred             cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeee-----eeeeeeeeceEEEEEeccCCeEEEeccCC
Q 023822           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL-----KTINSKKYGVDLVCFTSHPTTVIYSSKNG   98 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~~~   98 (276)
                      .+.+..+ +|...|+|++|+|++++|++|+ ||.|+|||+.++...     .....|...|.+++|+|++++|++++.  
T Consensus        42 ~~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~--  117 (337)
T d1gxra_          42 ARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE--  117 (337)
T ss_dssp             EEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES--
T ss_pred             ceEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeec--
Confidence            3444455 7999999999999999999987 799999999765332     223467788999999999999999998  


Q ss_pred             CCCceEEEEccCC--ceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCc
Q 023822           99 WDESLRLLSLHDN--KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGL  174 (276)
Q Consensus        99 ~d~~i~~~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~  174 (276)
                       |+.|++||+...  +....+..|...+..++|+|++.++++++.|+.|++||+++++.....  +...+.+++|++++.
T Consensus       118 -dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~  196 (337)
T d1gxra_         118 -ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT  196 (337)
T ss_dssp             -SSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred             -ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence             999999998754  455677889999999999999999999999999999999999887766  456677999999998


Q ss_pred             EEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCc
Q 023822          175 VFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS  253 (276)
Q Consensus       175 ~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  253 (276)
                      .++.+. |+.+++||+++++.     .....+...|.+++|+|++++|++++.|+.|++||+.+++.....    .|...
T Consensus       197 ~~~~~~~d~~v~i~d~~~~~~-----~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~----~~~~~  267 (337)
T d1gxra_         197 KLWTGGLDNTVRSWDLREGRQ-----LQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH----LHESC  267 (337)
T ss_dssp             EEEEEETTSEEEEEETTTTEE-----EEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEEC----CCSSC
T ss_pred             cccccccccccccccccccee-----ecccccccceEEEEEcccccccceecccccccccccccccccccc----ccccc
Confidence            888877 89999999987552     223346778999999999999999999999999999988876544    48899


Q ss_pred             eEEEEECCCCcEEEEecCCCCC
Q 023822          254 TLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       254 v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      |++++|+|+|++|++++.||.+
T Consensus       268 i~~v~~s~~g~~l~s~s~Dg~i  289 (337)
T d1gxra_         268 VLSLKFAYCGKWFVSTGKDNLL  289 (337)
T ss_dssp             EEEEEECTTSSEEEEEETTSEE
T ss_pred             cceEEECCCCCEEEEEeCCCeE
Confidence            9999999999999999999875

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.7e-39  Score=252.74  Aligned_cols=236  Identities=11%  Similarity=0.120  Sum_probs=204.6

Q ss_pred             cCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCC
Q 023822           32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN  111 (276)
Q Consensus        32 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~  111 (276)
                      .+.+.+.+++++|+|+.|+.++ ++.+.+||+++++....+.+|...|++++|+|++++|++++.   |+.|++||+.++
T Consensus        15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~---dg~i~iwd~~~~   90 (311)
T d1nr0a1          15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV---HGNVRIWDTTQT   90 (311)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEET---TSEEEEEESSST
T ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEecccc---CceEeeeeeecc
Confidence            3455677899999999999885 567999999999999999999999999999999999999998   999999999887


Q ss_pred             cee--eeecccCcceEEEEeccCCCEEEEeeC--CCeEEEEeccCceeeeeE--eecCCCeeEecCCCcE-EEEee-CCe
Q 023822          112 KYL--RYFKGHHDRVVSLSLCSSKDCFISGSL--DRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLV-FAVAF-GGY  183 (276)
Q Consensus       112 ~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~-l~~~~-d~~  183 (276)
                      +..  ..+..|...|.+++|+|++++|++++.  +..+++|++++++....+  +...+.+++|+|++.+ +++++ |+.
T Consensus        91 ~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~  170 (311)
T d1nr0a1          91 THILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNT  170 (311)
T ss_dssp             TCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSC
T ss_pred             ccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccccc
Confidence            643  457889999999999999999999886  456999999998887776  4566789999999864 55555 899


Q ss_pred             EEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecC----CCCCCceEEEEE
Q 023822          184 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK----PVSRNSTLEASF  259 (276)
Q Consensus       184 i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~~~v~~~~~  259 (276)
                      |++||+++.+.    ......|..+|++++|+|+++++++++.|+.|++||..+++....+...    .+|...|++++|
T Consensus       171 i~i~d~~~~~~----~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~  246 (311)
T d1nr0a1         171 VAIFEGPPFKF----KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTW  246 (311)
T ss_dssp             EEEEETTTBEE----EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEE
T ss_pred             ccccccccccc----ccccccccccccccccCcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999987654    5666788899999999999999999999999999999999888776532    257889999999


Q ss_pred             CCCCcEEEEecCCCCC
Q 023822          260 SPEGMFVISGRVSPFS  275 (276)
Q Consensus       260 s~~g~~l~~~~~dg~v  275 (276)
                      +|++++|++|+.||+|
T Consensus       247 s~~~~~l~tgs~Dg~v  262 (311)
T d1nr0a1         247 SPDGTKIASASADKTI  262 (311)
T ss_dssp             CTTSSEEEEEETTSEE
T ss_pred             CCCCCEEEEEeCCCeE
Confidence            9999999999999975

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=8.1e-39  Score=247.37  Aligned_cols=241  Identities=12%  Similarity=0.118  Sum_probs=198.5

Q ss_pred             ccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeee-eeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822           25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (276)
Q Consensus        25 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i  103 (276)
                      +..+.++||.++|++++|+|++++|++|+.||+|++||++++++...+. .|...|.+++|+|++..++++ .   |+.+
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~-~---d~~v   78 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVS-W---DDHL   78 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEE-T---TTEE
T ss_pred             ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeeccc-c---eeeE
Confidence            3467899999999999999999999999999999999999999888874 688899999999998765554 4   9999


Q ss_pred             EEEEccCCce---eeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEee
Q 023822          104 RLLSLHDNKY---LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF  180 (276)
Q Consensus       104 ~~~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  180 (276)
                      ++|+......   ......+...+.+++|+|+++.+++++ ++.+.+|+...  ...........+++++|++++++++.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~--~~~~~~~~~~~~~~~s~~~~~l~~g~  155 (299)
T d1nr0a2          79 KVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK--LTEVPISYNSSCVALSNDKQFVAVGG  155 (299)
T ss_dssp             EEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE--EEEEECSSCEEEEEECTTSCEEEEEE
T ss_pred             EEeccCCccccccccccccccccccccccccccccccccc-ccccccccccc--cccccccccccccccccccccccccc
Confidence            9999865432   222345777889999999998777665 56899998543  33333445567899999999888877


Q ss_pred             -CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEE
Q 023822          181 -GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF  259 (276)
Q Consensus       181 -d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~  259 (276)
                       |+.|++||+++.+.   .......|..+|++++|+|++++|++++.|+.|++||+.++..........+|...|++++|
T Consensus       156 ~dg~i~~~d~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  232 (299)
T d1nr0a2         156 QDSKVHVYKLSGASV---SEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSW  232 (299)
T ss_dssp             TTSEEEEEEEETTEE---EEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEE
T ss_pred             ccccccccccccccc---cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence             89999999987442   22334457789999999999999999999999999999988877665544478899999999


Q ss_pred             CCCCcEEEEecCCCCC
Q 023822          260 SPEGMFVISGRVSPFS  275 (276)
Q Consensus       260 s~~g~~l~~~~~dg~v  275 (276)
                      +|++++|++|+.||.+
T Consensus       233 s~~~~~l~sgs~dg~i  248 (299)
T d1nr0a2         233 SPDNVRLATGSLDNSV  248 (299)
T ss_dssp             CTTSSEEEEEETTSCE
T ss_pred             cccccceEEEcCCCEE
Confidence            9999999999999975

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4e-38  Score=251.80  Aligned_cols=240  Identities=15%  Similarity=0.179  Sum_probs=203.7

Q ss_pred             eccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEcc
Q 023822           30 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH  109 (276)
Q Consensus        30 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~  109 (276)
                      ..+|...|++++|+|++++|++|+.||.|++||...++.+..+..|...|.++.+++++..+++++.   ++.+++||..
T Consensus       117 ~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~---~~~i~~~d~~  193 (388)
T d1erja_         117 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG---DRTVRIWDLR  193 (388)
T ss_dssp             --CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET---TSEEEEEETT
T ss_pred             ccCCCCCEEEEEECCCCCcceeccccccccccccccccccccccccccccccccccccccccccccc---ceeeeeeecc
Confidence            3468889999999999999999999999999999999999999999999999999999999999998   9999999999


Q ss_pred             CCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE---------eecCCCeeEecCCCcEEEEee
Q 023822          110 DNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL---------RVQGRPAAAYDDQGLVFAVAF  180 (276)
Q Consensus       110 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~  180 (276)
                      +.........+...+....+.+++++|++++.|+.|++||++++.....+         +...+.+++|+|++.+|++++
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~  273 (388)
T d1erja_         194 TGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS  273 (388)
T ss_dssp             TTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEE
Confidence            98887777766655555555558889999999999999999988776665         234567899999999888877


Q ss_pred             -CCeEEEEecccCCCCC--------eeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCC
Q 023822          181 -GGYIRMFDARKYEKGP--------FDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR  251 (276)
Q Consensus       181 -d~~i~~~d~~~~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  251 (276)
                       |+.|++||++......        ........|...|.+++|+|++++|++|+.||.|++||+.+++++..+.   +|.
T Consensus       274 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~---~H~  350 (388)
T d1erja_         274 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ---GHR  350 (388)
T ss_dssp             TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE---CCS
T ss_pred             CCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEe---CCC
Confidence             8999999998754321        1233445678899999999999999999999999999999999999998   799


Q ss_pred             CceEEEEE------CCCCcEEEEecCCCCC
Q 023822          252 NSTLEASF------SPEGMFVISGRVSPFS  275 (276)
Q Consensus       252 ~~v~~~~~------s~~g~~l~~~~~dg~v  275 (276)
                      +.|.++++      +|++++|++|+.||+|
T Consensus       351 ~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I  380 (388)
T d1erja_         351 NSVISVAVANGSSLGPEYNVFATGSGDCKA  380 (388)
T ss_dssp             SCEEEEEECSSCTTCTTCEEEEEEETTSEE
T ss_pred             CCEEEEEEecCcccCCCCCEEEEEeCCCEE
Confidence            99999875      6799999999999976

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.8e-38  Score=249.52  Aligned_cols=238  Identities=21%  Similarity=0.348  Sum_probs=194.7

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeee------------------eeeeceEEEEEeccCCeEE
Q 023822           31 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN------------------SKKYGVDLVCFTSHPTTVI   92 (276)
Q Consensus        31 ~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------------------~~~~~v~~~~~~~~~~~l~   92 (276)
                      .+|.+.|+|++|+|+|++||+|+ |+.|+|||+.+++.+..+.                  .|...|.+++|+|++++|+
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~  137 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  137 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcce
Confidence            36999999999999999999986 8999999999988776654                  3455699999999999999


Q ss_pred             EeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEee-cCCCeeEec-
Q 023822           93 YSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV-QGRPAAAYD-  170 (276)
Q Consensus        93 ~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~-  170 (276)
                      +++.   |+.|++||...++.+..+.+|...|.++++++++..+++++.++.+++||.++......... .....+.+. 
T Consensus       138 s~~~---dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  214 (388)
T d1erja_         138 TGAE---DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSP  214 (388)
T ss_dssp             EEET---TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECS
T ss_pred             eccc---ccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccC
Confidence            9998   99999999999999999999999999999999999999999999999999999887766632 233344444 


Q ss_pred             CCCcEEEEee-CCeEEEEecccCCCCCe---eeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEE----
Q 023822          171 DQGLVFAVAF-GGYIRMFDARKYEKGPF---DIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS----  242 (276)
Q Consensus       171 ~~~~~l~~~~-d~~i~~~d~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----  242 (276)
                      +++.++++++ |+.|++||.++......   .......|..+|.+++|+|++++|++++.||.|++||+.+++...    
T Consensus       215 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  294 (388)
T d1erja_         215 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT  294 (388)
T ss_dssp             TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----------
T ss_pred             CCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccccc
Confidence            5778888776 89999999987553111   112234577899999999999999999999999999987654432    


Q ss_pred             --------EeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          243 --------TYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       243 --------~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                              ...   .|...|.+++|+|+|++|++|+.||.|
T Consensus       295 ~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~sg~~dg~i  332 (388)
T d1erja_         295 PNSGTCEVTYI---GHKDFVLSVATTQNDEYILSGSKDRGV  332 (388)
T ss_dssp             ----CEEEEEE---CCSSCEEEEEECGGGCEEEEEETTSEE
T ss_pred             ccccceeeecc---cccceEEEEEECCCCCEEEEEeCCCEE
Confidence                    223   578899999999999999999999975

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.2e-37  Score=240.14  Aligned_cols=246  Identities=12%  Similarity=0.107  Sum_probs=195.9

Q ss_pred             cccceeeccCC-CcEEEEEEcC--CCCEEEEeecCCeEEEEEccCCeee--------eeeeeeeeceEEEEEeccCCeEE
Q 023822           24 MEVGMSFRDYN-GRISSMDFHK--SSSYLVTASDDESIRLYDVTAATCL--------KTINSKKYGVDLVCFTSHPTTVI   92 (276)
Q Consensus        24 ~~~~~~~~~h~-~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~l~   92 (276)
                      ......+.+|. ..|++++|+|  ++++|++|+.||+|+|||+..++..        ..+..+.++|.+++|++++++++
T Consensus        52 ~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~  131 (325)
T d1pgua1          52 VPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLC  131 (325)
T ss_dssp             SCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             ccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccc
Confidence            34456677874 6899999998  5689999999999999998755432        23445677899999999999998


Q ss_pred             EeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCE-EEEeeCCCeEEEEeccCceeeeeE-----eecCCCe
Q 023822           93 YSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC-FISGSLDRTVLLWDQRAEKCQGLL-----RVQGRPA  166 (276)
Q Consensus        93 ~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~-----~~~~~~~  166 (276)
                      +++.+ .++.+.+|+..+++.+..+.+|...|.+++|+|++++ +++++.|+.+++||++..+.....     +...+.+
T Consensus       132 ~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~  210 (325)
T d1pgua1         132 VVGEG-RDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRD  210 (325)
T ss_dssp             EEECC-SSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEE
T ss_pred             eeecc-ccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEE
Confidence            87652 2788999999999999999999999999999999875 778999999999999887766655     2234678


Q ss_pred             eEecCC-CcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEEC---CCCcEEEEeecCCcEEEEECCCCcEE
Q 023822          167 AAYDDQ-GLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFS---NDGRLMLLTTMEGHIHVLDSFRGTLL  241 (276)
Q Consensus       167 ~~~~~~-~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~l~~~~~dg~i~i~d~~~~~~~  241 (276)
                      ++|+|+ +.+++++. |+.|++||+++++.    ...+..|..++..+.|+   |+|++|++++.|+.|+|||+++++++
T Consensus       211 v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~----~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~  286 (325)
T d1pgua1         211 VEFSPDSGEFVITVGSDRKISCFDGKSGEF----LKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCV  286 (325)
T ss_dssp             EEECSTTCCEEEEEETTCCEEEEETTTCCE----EEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             eeeccccceeccccccccceeeeeeccccc----cccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEE
Confidence            999996 57777665 99999999987654    55666777777766666   78999999999999999999999999


Q ss_pred             EEeecCCCCCCceEEEEECCC-CcEEEEecCCCCC
Q 023822          242 STYNVKPVSRNSTLEASFSPE-GMFVISGRVSPFS  275 (276)
Q Consensus       242 ~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~dg~v  275 (276)
                      ..+..+. +...+..+++.+. +.+|++++.||.+
T Consensus       287 ~~~~~~~-~~~~~~~~~~~~~~~~~l~s~s~dg~i  320 (325)
T d1pgua1         287 QKWTLDK-QQLGNQQVGVVATGNGRIISLSLDGTL  320 (325)
T ss_dssp             EEEECCT-TCGGGCEEEEEEEETTEEEEEETTSCE
T ss_pred             EEEEecC-CcccCeEEEEEECCCCEEEEEECCCEE
Confidence            9887432 4334444444433 3478999999976

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-36  Score=236.43  Aligned_cols=242  Identities=16%  Similarity=0.265  Sum_probs=184.6

Q ss_pred             hccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCC
Q 023822           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE  101 (276)
Q Consensus        22 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~  101 (276)
                      ..+++.+.|+||.+.|.+ +++++|++||||+.||+|+|||+.+++++..+.+|...|.+++|+|+  .+++++.   |+
T Consensus         4 ~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~---D~   77 (342)
T d2ovrb2           4 GELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGST---DR   77 (342)
T ss_dssp             SCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEET---TS
T ss_pred             CCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--cccccee---cc
Confidence            456777889999999865 36667899999999999999999999999999999999999999864  7888876   66


Q ss_pred             ceEEEEccCC----------------------------------------------------------------------
Q 023822          102 SLRLLSLHDN----------------------------------------------------------------------  111 (276)
Q Consensus       102 ~i~~~d~~~~----------------------------------------------------------------------  111 (276)
                      .+++|+....                                                                      
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  157 (342)
T d2ovrb2          78 TLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDF  157 (342)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTS
T ss_pred             cccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCC
Confidence            6666665432                                                                      


Q ss_pred             ----------ceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEee-
Q 023822          112 ----------KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF-  180 (276)
Q Consensus       112 ----------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-  180 (276)
                                +.+..+.+|...+  ..+.+++.++++++.||.|++||++..+.+..+..+.....++++++.++++++ 
T Consensus       158 ~i~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~  235 (342)
T d2ovrb2         158 MVKVWDPETETCLHTLQGHTNRV--YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNA  235 (342)
T ss_dssp             CEEEEEGGGTEEEEEECCCSSCE--EEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEET
T ss_pred             eEEEeecccceeeEEEcCccccc--ccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCCCEEEEEcC
Confidence                      2222223333333  334557889999999999999999999988887555544455555566777766 


Q ss_pred             CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecC--CCCCCceEEEE
Q 023822          181 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK--PVSRNSTLEAS  258 (276)
Q Consensus       181 d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~v~~~~  258 (276)
                      |+.|++||+...+.. ........|...+.++.++  ++++++|+.||.|++||+++++.++.+...  .+|...|++++
T Consensus       236 d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~  312 (342)
T d2ovrb2         236 DSTVKIWDIKTGQCL-QTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIR  312 (342)
T ss_dssp             TSCEEEEETTTCCEE-EEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEE
T ss_pred             CCEEEEEeccccccc-ccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEE
Confidence            999999999875531 1111223344556666654  568999999999999999999998887532  24677899999


Q ss_pred             ECCCCcEEEEecCCCC
Q 023822          259 FSPEGMFVISGRVSPF  274 (276)
Q Consensus       259 ~s~~g~~l~~~~~dg~  274 (276)
                      |+|++.+|++|+.||+
T Consensus       313 ~s~~~~~la~g~~dGt  328 (342)
T d2ovrb2         313 ASNTKLVCAVGSRNGT  328 (342)
T ss_dssp             ECSSEEEEEEECSSSS
T ss_pred             ECCCCCEEEEEeCCCC
Confidence            9999999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.5e-36  Score=241.71  Aligned_cols=246  Identities=13%  Similarity=0.103  Sum_probs=193.4

Q ss_pred             hccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeee--eeeeeeeeceEEEEEeccCCeEEEeccCCC
Q 023822           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL--KTINSKKYGVDLVCFTSHPTTVIYSSKNGW   99 (276)
Q Consensus        22 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~   99 (276)
                      ..+.....+++|.++|++++|+|++++|++++.|++|+|||+.++...  ..+..|...|.+++|+|+++.+++++.   
T Consensus        39 ~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~---  115 (371)
T d1k8kc_          39 NKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSG---  115 (371)
T ss_dssp             TEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEET---
T ss_pred             CCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecc---
Confidence            445667888999999999999999999999999999999999876543  445677889999999999999999998   


Q ss_pred             CCceEEEEccCCcee----eeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCce------------------eee
Q 023822          100 DESLRLLSLHDNKYL----RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK------------------CQG  157 (276)
Q Consensus       100 d~~i~~~d~~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~------------------~~~  157 (276)
                      |+.+++|++......    .....|...|.+++|+|++++|++++.|++|++||+....                  ...
T Consensus       116 d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (371)
T d1k8kc_         116 SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMF  195 (371)
T ss_dssp             TSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEE
T ss_pred             cCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeee
Confidence            999999998776532    3346788999999999999999999999999999986432                  111


Q ss_pred             eE--eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEE
Q 023822          158 LL--RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD  234 (276)
Q Consensus       158 ~~--~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  234 (276)
                      ..  +...+.+++|+|+++++++++ |+.|++||++....    +..+..|..+|.+++|+|++++|++|+ |+.+++|.
T Consensus       196 ~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~  270 (371)
T d1k8kc_         196 ESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA----VATLASETLPLLAVTFITESSLVAAGH-DCFPVLFT  270 (371)
T ss_dssp             ECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTE----EEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEE
T ss_pred             eccCccCcEEEEEeecccccccccccCCcceEEeeecccc----eeeeecccccceeeeecCCCCEEEEEc-CCceEEEE
Confidence            11  333466899999998888777 89999999987654    666777888999999999998887665 67666655


Q ss_pred             CCC--CcEEEEe------------------------------------ecCCCCCCceEEEEECCCC----cEEEEecCC
Q 023822          235 SFR--GTLLSTY------------------------------------NVKPVSRNSTLEASFSPEG----MFVISGRVS  272 (276)
Q Consensus       235 ~~~--~~~~~~~------------------------------------~~~~~~~~~v~~~~~s~~g----~~l~~~~~d  272 (276)
                      ...  +......                                    .....|.+.|+++++.+.+    ..++|++.|
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~D  350 (371)
T d1k8kc_         271 YDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMD  350 (371)
T ss_dssp             EETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETT
T ss_pred             eeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCC
Confidence            332  2211100                                    0001377889999997754    468999999


Q ss_pred             CCC
Q 023822          273 PFS  275 (276)
Q Consensus       273 g~v  275 (276)
                      |.|
T Consensus       351 g~v  353 (371)
T d1k8kc_         351 GGM  353 (371)
T ss_dssp             SEE
T ss_pred             CeE
Confidence            975

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.2e-35  Score=229.02  Aligned_cols=244  Identities=12%  Similarity=0.058  Sum_probs=178.4

Q ss_pred             cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeee---eeeeeeeeceEEEEEeccCC-eEEEeccCCC
Q 023822           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL---KTINSKKYGVDLVCFTSHPT-TVIYSSKNGW   99 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~   99 (276)
                      |+.++..++|++.|++|+|+|++++||+|+.||+|+|||+.++...   .....|..+|.+++|+|++. .+++++.   
T Consensus         1 ~~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~---   77 (342)
T d1yfqa_           1 MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTV---   77 (342)
T ss_dssp             CEEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEET---
T ss_pred             CCeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccc---
Confidence            4567778999999999999999999999999999999999765433   23346889999999999754 6777777   


Q ss_pred             CCceEEEEccCCceeeeecccCcc-eEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe--------ecCCCeeEec
Q 023822          100 DESLRLLSLHDNKYLRYFKGHHDR-VVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR--------VQGRPAAAYD  170 (276)
Q Consensus       100 d~~i~~~d~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--------~~~~~~~~~~  170 (276)
                      |+.|++|++...........+... .....+.++...+++++.++.+++||++.........        ........+.
T Consensus        78 d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (342)
T d1yfqa_          78 QGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMD  157 (342)
T ss_dssp             TSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEE
T ss_pred             ccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeee
Confidence            999999999888776666544443 3445556677889999999999999987554333221        1112234455


Q ss_pred             CCCcEEEEee-CCeEEEEecccCCCCCee---------------------------------------------------
Q 023822          171 DQGLVFAVAF-GGYIRMFDARKYEKGPFD---------------------------------------------------  198 (276)
Q Consensus       171 ~~~~~l~~~~-d~~i~~~d~~~~~~~~~~---------------------------------------------------  198 (276)
                      +.+..++.+. |+.|++||++........                                                   
T Consensus       158 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~  237 (342)
T d1yfqa_         158 TNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA  237 (342)
T ss_dssp             ECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred             ccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccce
Confidence            5555554444 677777776543311000                                                   


Q ss_pred             ------eeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCC
Q 023822          199 ------IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVS  272 (276)
Q Consensus       199 ------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  272 (276)
                            ......|...+++++|+|++++|++|+.||.|++||+.+++.+..+.    ....+..++|+|+|++|++++.|
T Consensus       238 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~----~~~~~~~~~~s~~~~~l~~a~sd  313 (342)
T d1yfqa_         238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA----KFNEDSVVKIACSDNILCLATSD  313 (342)
T ss_dssp             EECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC----CCSSSEEEEEEECSSEEEEEEEC
T ss_pred             eeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEec----CCCCCEEEEEEeCCCEEEEEEcC
Confidence                  00012244567899999999999999999999999999999998876    22345567888999999998887


Q ss_pred             CC
Q 023822          273 PF  274 (276)
Q Consensus       273 g~  274 (276)
                      ++
T Consensus       314 d~  315 (342)
T d1yfqa_         314 DT  315 (342)
T ss_dssp             TH
T ss_pred             Cc
Confidence            64

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.4e-33  Score=218.36  Aligned_cols=234  Identities=16%  Similarity=0.272  Sum_probs=189.7

Q ss_pred             ceeeccCCCcE-EEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEE
Q 023822           27 GMSFRDYNGRI-SSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL  105 (276)
Q Consensus        27 ~~~~~~h~~~v-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~  105 (276)
                      ..+|+||...| +|++|  ++++||+|+.||+|+|||+.+++++.++.+|..+|.+++|+|+ ..+++++.   |+.|++
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~---D~~i~i   78 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGST---DRTVRV   78 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEET---TCCEEE
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEec---cccccc
Confidence            56789998885 66665  5789999999999999999999999999999999999999985 57888888   999999


Q ss_pred             EEccCCceeeeeccc--CcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe-----------------------
Q 023822          106 LSLHDNKYLRYFKGH--HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR-----------------------  160 (276)
Q Consensus       106 ~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----------------------  160 (276)
                      |++...+........  ........+.++++.+++++.|+.|++||+++........                       
T Consensus        79 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (355)
T d1nexb2          79 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR  158 (355)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEE
T ss_pred             ccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeee
Confidence            999988776655433  3344566778889999999999999999998765443221                       


Q ss_pred             ecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCc
Q 023822          161 VQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT  239 (276)
Q Consensus       161 ~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  239 (276)
                      .+......+.+++.+++.+. |+.|++||+++.+.    ......+...+.++.|+|+++++++++.|+.|++||..++.
T Consensus       159 ~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~  234 (355)
T d1nexb2         159 GHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKC----LYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE  234 (355)
T ss_dssp             CCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEE----EEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCC
T ss_pred             eccccccccccccceeeeecccceeeeeecccccc----eeeeeccccccccccccccceeeecccccceEEeeeccccc
Confidence            11122344556677777776 89999999987553    55566777889999999999999999999999999999999


Q ss_pred             EEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          240 LLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       240 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      .+..+.   +|...|.+++|++  ++|++|+.||.|
T Consensus       235 ~~~~~~---~h~~~v~~~~~~~--~~l~~~~~dg~i  265 (355)
T d1nexb2         235 LMYTLQ---GHTALVGLLRLSD--KFLVSAAADGSI  265 (355)
T ss_dssp             EEEEEC---CCSSCCCEEEECS--SEEEEECTTSEE
T ss_pred             cccccc---ccccccccccccc--ceeeeeeccccc
Confidence            999998   7899999999975  599999999975

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-33  Score=214.18  Aligned_cols=232  Identities=16%  Similarity=0.235  Sum_probs=182.4

Q ss_pred             cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i  103 (276)
                      ++.+....+|...|+|++|  ++++||+|+.||+|+|||+.+++++..+.+|..+|.+++|  ++++|++++.   |+.|
T Consensus         5 ~~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~---D~~i   77 (293)
T d1p22a2           5 LQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSS---DSTV   77 (293)
T ss_dssp             CCCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEET---TSCE
T ss_pred             EEEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccc---cccc
Confidence            4556667789999999765  7899999999999999999999999999999999999887  6789999998   9999


Q ss_pred             EEEEccCCceeee-------------------------------------------ecccCcceEEEEeccCCCEEEEee
Q 023822          104 RLLSLHDNKYLRY-------------------------------------------FKGHHDRVVSLSLCSSKDCFISGS  140 (276)
Q Consensus       104 ~~~d~~~~~~~~~-------------------------------------------~~~~~~~i~~~~~~~~~~~l~~~~  140 (276)
                      ++|++..+.....                                           +..|...+..+.+.  ...+++++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s  155 (293)
T d1p22a2          78 RVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSAS  155 (293)
T ss_dssp             EEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEE
T ss_pred             cccccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceec--cccccccc
Confidence            9999876533221                                           12344455555443  45688899


Q ss_pred             CCCeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCc
Q 023822          141 LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR  219 (276)
Q Consensus       141 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  219 (276)
                      .|+.|++||+++.+.+..+.........+.+++..++++. |+.|++||+++...    ......+...+..  +++++.
T Consensus       156 ~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~v~~--~~~~~~  229 (293)
T d1p22a2         156 GDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGAC----LRVLEGHEELVRC--IRFDNK  229 (293)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCE----EEEECCCSSCEEE--EECCSS
T ss_pred             CCCceeeecCCCCcEEEEEcccccccccccCCCCeEEEecCCCEEEEEeccccee----eeeecccceeeee--ccccce
Confidence            9999999999999988888665555555555666666665 99999999987553    4555566655554  567788


Q ss_pred             EEEEeecCCcEEEEECCC---------CcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          220 LMLLTTMEGHIHVLDSFR---------GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       220 ~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      +|++++.||.|++||+.+         ...+..+.   +|.+.|++++|+  +++|++|+.||+|
T Consensus       230 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~H~~~V~~v~~d--~~~l~s~s~Dg~i  289 (293)
T d1p22a2         230 RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV---EHSGRVFRLQFD--EFQIVSSSHDDTI  289 (293)
T ss_dssp             EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC---CCSSCCCCEEEC--SSCEEECCSSSEE
T ss_pred             EEEEEcCCCEEEEEECCCCccccccCCceeeEEec---CCCCCEEEEEEc--CCEEEEEecCCEE
Confidence            999999999999999643         34566666   789999999994  5689999999976

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.9e-33  Score=217.27  Aligned_cols=205  Identities=14%  Similarity=0.252  Sum_probs=176.0

Q ss_pred             ccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCe----eeeee--------------------------
Q 023822           23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT----CLKTI--------------------------   72 (276)
Q Consensus        23 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~----~~~~~--------------------------   72 (276)
                      +.+....+..|..+|.+++|+|+++++++++.|+.+++|+.....    ....+                          
T Consensus        86 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (340)
T d1tbga_          86 TTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT  165 (340)
T ss_dssp             TTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTE
T ss_pred             cceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceeccccccccccccccccccccccccccc
Confidence            445667788999999999999999999999999999999965321    11111                          


Q ss_pred             ---------------eeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEE
Q 023822           73 ---------------NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFI  137 (276)
Q Consensus        73 ---------------~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  137 (276)
                                     ..+...+....+.+....++++..   |+.|++||+++++++..+.+|...|.+++|+|++++|+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~  242 (340)
T d1tbga_         166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC---DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA  242 (340)
T ss_dssp             EEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET---TTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             ccccccccccccccccccceeEeeeccccccceeEEeec---CceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEE
Confidence                           112234667788888899999988   99999999999999999999999999999999999999


Q ss_pred             EeeCCCeEEEEeccCceeeeeE----eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEE
Q 023822          138 SGSLDRTVLLWDQRAEKCQGLL----RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVV  212 (276)
Q Consensus       138 ~~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~  212 (276)
                      +++.|+.|++||++.......+    +...+..++|+|++++|++++ |+.|++||+.+++.    +..+.+|..+|+++
T Consensus       243 s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~----~~~~~~H~~~V~~l  318 (340)
T d1tbga_         243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR----AGVLAGHDNRVSCL  318 (340)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCE----EEEECCCSSCEEEE
T ss_pred             EEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcE----EEEEcCCCCCEEEE
Confidence            9999999999999998877766    334467899999999988887 89999999988664    66778899999999


Q ss_pred             EECCCCcEEEEeecCCcEEEEE
Q 023822          213 KFSNDGRLMLLTTMEGHIHVLD  234 (276)
Q Consensus       213 ~~~~~~~~l~~~~~dg~i~i~d  234 (276)
                      +|+|++++|++|+.||.|+|||
T Consensus       319 ~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         319 GVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EECTTSSCEEEEETTSCEEEEC
T ss_pred             EEeCCCCEEEEEccCCEEEEeC
Confidence            9999999999999999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.8e-32  Score=211.47  Aligned_cols=240  Identities=9%  Similarity=0.028  Sum_probs=184.1

Q ss_pred             ccceee-ccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCee---eeeeeeeeeceEEEEEeccCCeEEEeccCCCC
Q 023822           25 EVGMSF-RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATC---LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD  100 (276)
Q Consensus        25 ~~~~~~-~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d  100 (276)
                      +..+.+ .+|...|++++|+|++++ ++++.|+.+++|+......   ......+...+.+++|+++++.++.+.    +
T Consensus        45 ~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~----~  119 (299)
T d1nr0a2          45 ISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC----Y  119 (299)
T ss_dssp             CEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE----S
T ss_pred             cEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEEeccCCccccccccccccccccccccccccccccccccc----c
Confidence            334444 479999999999999875 5566789999999865432   222344566789999999999888776    7


Q ss_pred             CceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE---eecCCCeeEecCCCcEEE
Q 023822          101 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL---RVQGRPAAAYDDQGLVFA  177 (276)
Q Consensus       101 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~l~  177 (276)
                      +.+.+|+...  .....  ....+.+++|+|++++|++++.|+.|++||+++.+.....   +...+.+++|+|++.+++
T Consensus       120 ~~i~~~~~~~--~~~~~--~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  195 (299)
T d1nr0a2         120 KHIAIYSHGK--LTEVP--ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLV  195 (299)
T ss_dssp             SEEEEEETTE--EEEEE--CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred             cccccccccc--ccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            8999998542  22222  3445788999999999999999999999999987654433   456678999999999888


Q ss_pred             Eee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEE
Q 023822          178 VAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE  256 (276)
Q Consensus       178 ~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~  256 (276)
                      +++ |+.|++||+.+... ......+..|..+|++++|+|++++|++|+.||.|++||+.+++..........+...+..
T Consensus       196 ~~~~d~~i~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~  274 (299)
T d1nr0a2         196 ATDQSRKVIPYSVANNFE-LAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNS  274 (299)
T ss_dssp             EEETTSCEEEEEGGGTTE-ESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEE
T ss_pred             cccccccccccccccccc-ccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEE
Confidence            877 89999999987542 1123345668889999999999999999999999999999887655444333234556666


Q ss_pred             EEECCCCcEEEEecCCCCC
Q 023822          257 ASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       257 ~~~s~~g~~l~~~~~dg~v  275 (276)
                      +.| +++++|++|+.||+|
T Consensus       275 ~~~-~~~~~l~s~s~D~~i  292 (299)
T d1nr0a2         275 VIW-LNETTIVSAGQDSNI  292 (299)
T ss_dssp             EEE-EETTEEEEEETTSCE
T ss_pred             EEE-CCCCEEEEEeCCCEE
Confidence            655 667899999999986

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-32  Score=212.68  Aligned_cols=204  Identities=17%  Similarity=0.296  Sum_probs=184.6

Q ss_pred             cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i  103 (276)
                      .+....+.+|...+.++.|+|+++.+++++.|+.+++||+.+++....+..|...+.+++|++++..+++++.   |+.|
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---d~~v  167 (317)
T d1vyhc1          91 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN---DQTV  167 (317)
T ss_dssp             SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET---TSCE
T ss_pred             cccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeC---CCeE
Confidence            3445556789999999999999999999999999999999999999999999999999999999999999998   9999


Q ss_pred             EEEEccCCceeeeecccCcceEEEEeccCC--------------------CEEEEeeCCCeEEEEeccCceeeeeE--ee
Q 023822          104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSK--------------------DCFISGSLDRTVLLWDQRAEKCQGLL--RV  161 (276)
Q Consensus       104 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~--------------------~~l~~~~~d~~i~iwd~~~~~~~~~~--~~  161 (276)
                      ++|++.+++....+..|...+.+++|+|++                    ..+++++.|+.|++||+++++++..+  +.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~  247 (317)
T d1vyhc1         168 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD  247 (317)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred             EEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCC
Confidence            999999999999999999999999998753                    46889999999999999999998888  44


Q ss_pred             cCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEE
Q 023822          162 QGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD  234 (276)
Q Consensus       162 ~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  234 (276)
                      ..+..++++|++++|++++ ||.|++||+++++.    +..+.+|..+|++++|+|++++|++|+.||.|+|||
T Consensus       248 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         248 NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC----MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCC----CEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCEEEEEECCCCCEEEEEECCCeEEEEECCCCcE----EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            5677899999998888776 89999999998765    566778999999999999999999999999999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-33  Score=216.14  Aligned_cols=229  Identities=12%  Similarity=0.108  Sum_probs=174.8

Q ss_pred             cccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCce
Q 023822           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i  103 (276)
                      -+++++++||.++|++++|+|    |++|+.||+|++||+.++.     ..|...|.++.++++. .+++++.   |+++
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~-----~~h~~~V~~~~~~~~~-~~~s~s~---D~~v   69 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKAQ-EYSSISW---DDTL   69 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE-----CCCCSCEEEEECCSTT-CCEEEET---TTEE
T ss_pred             cceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC-----CCCCCCEEEEEecCCC-eEEEEee---cccc
Confidence            367789999999999999987    9999999999999987643     4677788888887654 4566665   8888


Q ss_pred             EEEEccCC----------------------------------ceeeeecccCcceEEEEeccCCCEEEEeeCCC-eEEEE
Q 023822          104 RLLSLHDN----------------------------------KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR-TVLLW  148 (276)
Q Consensus       104 ~~~d~~~~----------------------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~i~iw  148 (276)
                      ++|++...                                  +.+..+. +..  ...+++++++.+++++.++ .+++|
T Consensus        70 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~v~~~~~~~v~~~  146 (287)
T d1pgua2          70 KVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNS--PGSAVSLSQNYVAVGLEEGNTIQVF  146 (287)
T ss_dssp             EETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSS--CEEEEEECSSEEEEEETTTSCEEEE
T ss_pred             ccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeecc-ccc--eeeeeeccCcceeeeccccceeeee
Confidence            88876432                                  1111111 111  2345667888888887765 79999


Q ss_pred             eccCceeeeeE---eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCC-------
Q 023822          149 DQRAEKCQGLL---RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-------  217 (276)
Q Consensus       149 d~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------  217 (276)
                      ++...+....+   +...+.+++|+|++.+|+++. |+.|++||+.+.+.   .......|..+|.+++|+|.       
T Consensus       147 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~---~~~~~~~h~~~v~~~~~~p~~~~~~~~  223 (287)
T d1pgua2         147 KLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREV---KTSRWAFRTSKINAISWKPAEKGANEE  223 (287)
T ss_dssp             ETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE---EECCSCCCSSCEEEEEECCCC------
T ss_pred             eccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccc---ccccccccccccceeeecccccccccc
Confidence            99876655544   344577899999999888887 89999999987542   22345678889999999874       


Q ss_pred             ---CcEEEEeecCCcEEEEECCC-CcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          218 ---GRLMLLTTMEGHIHVLDSFR-GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       218 ---~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                         +.+|++|+.|+.|++||+++ ++.+..+.   +|...|++++|+|++ .|++++.||+|
T Consensus       224 ~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~---~h~~~V~~v~~~~~~-~l~s~g~D~~v  281 (287)
T d1pgua2         224 EIEEDLVATGSLDTNIFIYSVKRPMKIIKALN---AHKDGVNNLLWETPS-TLVSSGADACI  281 (287)
T ss_dssp             CCSCCEEEEEETTSCEEEEESSCTTCCEEETT---SSTTCEEEEEEEETT-EEEEEETTSCE
T ss_pred             cCCCCeeEeecCCCeEEEEECCCCCeEEEEeC---CCCCCeEEEEECCCC-EEEEEECCCeE
Confidence               46899999999999999977 44555555   799999999999987 58889999976

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.3e-33  Score=222.30  Aligned_cols=234  Identities=12%  Similarity=0.106  Sum_probs=169.3

Q ss_pred             ceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCee-------e------------eee---------------
Q 023822           27 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATC-------L------------KTI---------------   72 (276)
Q Consensus        27 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-------~------------~~~---------------   72 (276)
                      ....++|.+.|.++++++  ++|++++.|++|+|||..+.+.       .            ...               
T Consensus         7 ~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s   84 (393)
T d1sq9a_           7 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT   84 (393)
T ss_dssp             EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred             eecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEE
Confidence            355689999999999875  6999999999999999643210       0            000               


Q ss_pred             ----------e---------------------eeeeceEEEEEecc-----CCeEEEeccCCCCCceEEEEccCCce---
Q 023822           73 ----------N---------------------SKKYGVDLVCFTSH-----PTTVIYSSKNGWDESLRLLSLHDNKY---  113 (276)
Q Consensus        73 ----------~---------------------~~~~~v~~~~~~~~-----~~~l~~~~~~~~d~~i~~~d~~~~~~---  113 (276)
                                .                     .+...+..++|.++     +.++++++.   |+.+++|++.....   
T Consensus        85 ~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---dg~i~vw~~~~~~~~~~  161 (393)
T d1sq9a_          85 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV---KGTTYIWKFHPFADESN  161 (393)
T ss_dssp             EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEET---TSCEEEEEEESSSSHHH
T ss_pred             EeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcC---CCcEEEEEeecCCcccc
Confidence                      0                     00112334455544     345667776   89999999753210   


Q ss_pred             ---------------eeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--------eecCCCeeEec
Q 023822          114 ---------------LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--------RVQGRPAAAYD  170 (276)
Q Consensus       114 ---------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--------~~~~~~~~~~~  170 (276)
                                     ......+...+.+++|+|++ +|++|+.|++|++||+++++++..+        |...+.+++|+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  240 (393)
T d1sq9a_         162 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS  240 (393)
T ss_dssp             HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred             eeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccc
Confidence                           11122345568899999987 8999999999999999998877655        34567899999


Q ss_pred             CCCcEEEEee-CC---eEEEEecccCCCCC---------eeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCC
Q 023822          171 DQGLVFAVAF-GG---YIRMFDARKYEKGP---------FDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR  237 (276)
Q Consensus       171 ~~~~~l~~~~-d~---~i~~~d~~~~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  237 (276)
                      |++++|++++ |+   .|++||+++++...         .......+|...|++++|+|++++|++++.|++|++||+++
T Consensus       241 pdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~  320 (393)
T d1sq9a_         241 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT  320 (393)
T ss_dssp             SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred             cccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCC
Confidence            9999999887 54   59999998754310         11122347889999999999999999999999999999999


Q ss_pred             CcEEEEeecCCCCCCceE----EEEECCCCcEEEEe
Q 023822          238 GTLLSTYNVKPVSRNSTL----EASFSPEGMFVISG  269 (276)
Q Consensus       238 ~~~~~~~~~~~~~~~~v~----~~~~s~~g~~l~~~  269 (276)
                      ++++.++.   +|...|.    .++|+|++..++++
T Consensus       321 g~~~~~l~---gH~~~v~~~~~~~~~~~~~~~~~~~  353 (393)
T d1sq9a_         321 KERITTLN---MHCDDIEIEEDILAVDEHGDSLAEP  353 (393)
T ss_dssp             TEEEEEEE---CCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred             CCEEEEEC---CcCCcccCCccEEEECCCCCEEEEc
Confidence            99999998   6766554    35666666555433

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.3e-31  Score=208.03  Aligned_cols=241  Identities=17%  Similarity=0.283  Sum_probs=174.4

Q ss_pred             hccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeee--eceEEEEEeccCCeEEEeccC--
Q 023822           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK--YGVDLVCFTSHPTTVIYSSKN--   97 (276)
Q Consensus        22 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~~--   97 (276)
                      .+.+...++++|.++|++++|+|+ ++|++|+.|++|++|+....+.........  .......+.+++..+++++.+  
T Consensus        41 ~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  119 (355)
T d1nexb2          41 INKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT  119 (355)
T ss_dssp             TTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSE
T ss_pred             CCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCc
Confidence            345677889999999999999985 589999999999999998776554432221  122333334444444444430  


Q ss_pred             ----------------------------------------------------------CCCCceEEEEccCCceeeeecc
Q 023822           98 ----------------------------------------------------------GWDESLRLLSLHDNKYLRYFKG  119 (276)
Q Consensus        98 ----------------------------------------------------------~~d~~i~~~d~~~~~~~~~~~~  119 (276)
                                                                                ..|+.|++||+.+++.+....+
T Consensus       120 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~  199 (355)
T d1nexb2         120 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG  199 (355)
T ss_dssp             EEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             EEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeec
Confidence                                                                      0055555555555555555666


Q ss_pred             cCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCC
Q 023822          120 HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGP  196 (276)
Q Consensus       120 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~  196 (276)
                      +...+.++.|+|+++++++++.|+.|++||++++..+..+  +...+.++++++  +++++++ |+.|++||+++...  
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~--  275 (355)
T d1nexb2         200 HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSR--  275 (355)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCE--
T ss_pred             cccccccccccccceeeecccccceEEeeecccccccccccccccccccccccc--ceeeeeecccccccccccccce--
Confidence            7778889999999999999999999999999999988887  445567777764  4565555 99999999987542  


Q ss_pred             eeeeeecCCCCCceEE-EECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          197 FDIFSVGGDISDANVV-KFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       197 ~~~~~~~~~~~~i~~~-~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                        ..  ..|...+.++ .++++++++++| .||.|++||+++++++.....  +|..+|.+++|+|+ .++++++.||.+
T Consensus       276 --~~--~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~--~~~~~V~~v~~~~~-~~~~~~s~dg~~  347 (355)
T d1nexb2         276 --KF--SYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANIL--KDADQIWSVNFKGK-TLVAAVEKDGQS  347 (355)
T ss_dssp             --EE--EEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTT--TTCSEEEEEEEETT-EEEEEEESSSCE
T ss_pred             --ec--ccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEec--CCCCCEEEEEEcCC-eEEEEEECCCcE
Confidence              22  2334445444 567788876665 589999999999998864322  68899999999987 578889999964

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-31  Score=209.48  Aligned_cols=233  Identities=10%  Similarity=0.060  Sum_probs=181.0

Q ss_pred             cEEEEEEcCCCCEEEEeecCC-eEEEEEccCC--eeeeeeeee-eeceEEEEEec--cCCeEEEeccCCCCCceEEEEcc
Q 023822           36 RISSMDFHKSSSYLVTASDDE-SIRLYDVTAA--TCLKTINSK-KYGVDLVCFTS--HPTTVIYSSKNGWDESLRLLSLH  109 (276)
Q Consensus        36 ~v~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~--~~~~~~~~~-~~~v~~~~~~~--~~~~l~~~~~~~~d~~i~~~d~~  109 (276)
                      .+++++|+|+++.|+.++.+. .|+.|+....  .....+.+| ...|++++|+|  ++.++++++.   ||.|++||+.
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~---Dg~i~iWd~~   95 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDE---SGKVIVWGWT   95 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEET---TSEEEEEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeC---CCCEEEeeec
Confidence            467899999999999886554 3556665433  345566666 46799999998  5678889988   9999999987


Q ss_pred             CCceee--------eecccCcceEEEEeccCCCEEEEeeC--CCeEEEEeccCceeeeeE--eecCCCeeEecCCCcE-E
Q 023822          110 DNKYLR--------YFKGHHDRVVSLSLCSSKDCFISGSL--DRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLV-F  176 (276)
Q Consensus       110 ~~~~~~--------~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~-l  176 (276)
                      .++...        .+..|.++|.+++|+++++++++++.  ++.+++|+.++++.+..+  +...+.+++|+|++.. +
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  175 (325)
T d1pgua1          96 FDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRS  175 (325)
T ss_dssp             EEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEE
T ss_pred             CCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceE
Confidence            654322        34568889999999999998887764  678999999998888777  4556778999998754 4


Q ss_pred             EEe-eCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCC-CcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCce
Q 023822          177 AVA-FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNST  254 (276)
Q Consensus       177 ~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  254 (276)
                      +++ .|+.+++||.+..+. .........+...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+.   +|..++
T Consensus       176 ~~~~~d~~v~~~d~~~~~~-~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~---~~~~~v  251 (325)
T d1pgua1         176 MTVGDDGSVVFYQGPPFKF-SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE---DDQEPV  251 (325)
T ss_dssp             EEEETTTEEEEEETTTBEE-EEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECC---BTTBCC
T ss_pred             EEeeccccccccccccccc-ceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccccc---cccccc
Confidence            444 499999999876542 1112234466778999999996 6889999999999999999999999988   566666


Q ss_pred             EEEEEC---CCCcEEEEecCCCCC
Q 023822          255 LEASFS---PEGMFVISGRVSPFS  275 (276)
Q Consensus       255 ~~~~~s---~~g~~l~~~~~dg~v  275 (276)
                      ..+.|+   |+|++|++++.|+.|
T Consensus       252 ~~~~~s~~~~dg~~l~s~s~D~~i  275 (325)
T d1pgua1         252 QGGIFALSWLDSQKFATVGADATI  275 (325)
T ss_dssp             CSCEEEEEESSSSEEEEEETTSEE
T ss_pred             ccceeeeeccCCCEEEEEeCCCeE
Confidence            555555   789999999999975

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=1.5e-29  Score=199.43  Aligned_cols=233  Identities=9%  Similarity=0.018  Sum_probs=177.6

Q ss_pred             cCCCcEEEEEEcCCCCEEEEeecCC--eEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEcc
Q 023822           32 DYNGRISSMDFHKSSSYLVTASDDE--SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH  109 (276)
Q Consensus        32 ~h~~~v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~  109 (276)
                      +|...|.+++|+|||+.|++++.+.  .|++||.++++. ..+..|...+.+++|+|+++++++++.   ++.+++|++.
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~-~~~~~~~~~v~~~~~spdg~~l~~~~~---~~~~~~~~~~  115 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA-EKFEENLGNVFAMGVDRNGKFAVVAND---RFEIMTVDLE  115 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE-EECCCCCCSEEEEEECTTSSEEEEEET---TSEEEEEETT
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE-EEeeCCCceEEeeeecccccccceecc---cccccccccc
Confidence            6899999999999999998877654  799999987765 456778889999999999999999998   9999999999


Q ss_pred             CCceeeeecccCcceEEEEeccCCCEEEEee----------CCCeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEE
Q 023822          110 DNKYLRYFKGHHDRVVSLSLCSSKDCFISGS----------LDRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAV  178 (276)
Q Consensus       110 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~  178 (276)
                      +++....+..|...+.+++|+|++++|+.+.          .++.+++||+.+++..... +......+.|+|+++.|+.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  195 (360)
T d1k32a3         116 TGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYY  195 (360)
T ss_dssp             TCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEE
T ss_pred             ccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEE
Confidence            9999999999999999999999999988654          3457999999988766554 3344567899999998887


Q ss_pred             ee-CCeEEEEecccCCCC---Ceee------------------------------------eeecCCCCCceEEEECCCC
Q 023822          179 AF-GGYIRMFDARKYEKG---PFDI------------------------------------FSVGGDISDANVVKFSNDG  218 (276)
Q Consensus       179 ~~-d~~i~~~d~~~~~~~---~~~~------------------------------------~~~~~~~~~i~~~~~~~~~  218 (276)
                      ++ ++.+.+||.......   ....                                    ............+...+++
T Consensus       196 ~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (360)
T d1k32a3         196 LSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESS  275 (360)
T ss_dssp             EESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSE
T ss_pred             EeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCC
Confidence            77 789999986543210   0000                                    0000011122233333333


Q ss_pred             c-------------EEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          219 R-------------LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       219 ~-------------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      .             ++++++.++.|++||+.+++.. .      +.+.|.+++|+|||++|++++.||.|
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~------~~~~v~~~~~SpDG~~l~~~~~Dg~i  338 (360)
T d1k32a3         276 ILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT-E------VKNNLTDLRLSADRKTVMVRKDDGKI  338 (360)
T ss_dssp             EEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE-E------EEEEEEEEEECTTSCEEEEEETTSCE
T ss_pred             ceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE-E------ecCCcCEEEECCCCCEEEEEECCCeE
Confidence            2             3445566889999999887653 2      33568999999999999999999975

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.6e-26  Score=176.26  Aligned_cols=202  Identities=17%  Similarity=0.323  Sum_probs=158.9

Q ss_pred             hccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeee-----------------------------
Q 023822           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTI-----------------------------   72 (276)
Q Consensus        22 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----------------------------   72 (276)
                      .+.+..+++++|.++|++++|  ++++|++|+.|+.|++|++..+......                             
T Consensus        43 ~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (293)
T d1p22a2          43 NTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVW  120 (293)
T ss_dssp             SSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEE
T ss_pred             CCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccccccccccccccccccccccccccceeecccccceeEe
Confidence            356778889999999999987  5689999999999999998765433221                             


Q ss_pred             --------------eeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEE
Q 023822           73 --------------NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFIS  138 (276)
Q Consensus        73 --------------~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  138 (276)
                                    ..|...+..+.+  ....+++++.   |+.|++||+++++.+..+.++...+..+.++  +..+++
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~s~---d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~  193 (293)
T d1p22a2         121 DMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG---DRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVS  193 (293)
T ss_dssp             ECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET---TSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEE
T ss_pred             ecccccccccccccccccccccccee--cccccccccC---CCceeeecCCCCcEEEEEcccccccccccCC--CCeEEE
Confidence                          112223333333  4556777776   9999999999999999999999988888775  568999


Q ss_pred             eeCCCeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCC-----CeeeeeecCCCCCceEE
Q 023822          139 GSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKG-----PFDIFSVGGDISDANVV  212 (276)
Q Consensus       139 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~-----~~~~~~~~~~~~~i~~~  212 (276)
                      ++.|+.|++||+++.+.+............+.+++.+++++. |+.|++||++.....     ......+.+|..+|+++
T Consensus       194 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v  273 (293)
T d1p22a2         194 GSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL  273 (293)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCE
T ss_pred             ecCCCEEEEEecccceeeeeecccceeeeeccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEE
Confidence            999999999999999988887666656667778887777776 999999998754321     23355677899999999


Q ss_pred             EECCCCcEEEEeecCCcEEEEE
Q 023822          213 KFSNDGRLMLLTTMEGHIHVLD  234 (276)
Q Consensus       213 ~~~~~~~~l~~~~~dg~i~i~d  234 (276)
                      +|+  +++|++++.||+|++||
T Consensus       274 ~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         274 QFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EEC--SSCEEECCSSSEEEEEC
T ss_pred             EEc--CCEEEEEecCCEEEEeC
Confidence            995  56899999999999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1e-26  Score=181.32  Aligned_cols=201  Identities=19%  Similarity=0.273  Sum_probs=157.5

Q ss_pred             EEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEee
Q 023822           61 YDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS  140 (276)
Q Consensus        61 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  140 (276)
                      |+..+.++...+++|...|.. ++++++++|++++.   |+.|++||+.+++++.++.+|...|.+++|+|+  +|++++
T Consensus         1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~---Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s   74 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSD---DNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGS   74 (342)
T ss_dssp             HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEET---TSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEE
T ss_pred             CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeC---CCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccce
Confidence            555667788889999998865 46778999999998   999999999999999999999999999999874  899999


Q ss_pred             CCCeEEEEeccCceeeeeE-------------------------------------------------------------
Q 023822          141 LDRTVLLWDQRAEKCQGLL-------------------------------------------------------------  159 (276)
Q Consensus       141 ~d~~i~iwd~~~~~~~~~~-------------------------------------------------------------  159 (276)
                      .|+.+++|+..........                                                             
T Consensus        75 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (342)
T d2ovrb2          75 TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGA  154 (342)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEE
T ss_pred             ecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeec
Confidence            9999999986643211110                                                             


Q ss_pred             -------------------eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCc
Q 023822          160 -------------------RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR  219 (276)
Q Consensus       160 -------------------~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  219 (276)
                                         ..+......+.+++..+++++ |+.|++||++..+.    ......|...+.++++++  +
T Consensus       155 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~----~~~~~~~~~~v~~~~~~~--~  228 (342)
T d2ovrb2         155 YDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNC----IHTLTGHQSLTSGMELKD--N  228 (342)
T ss_dssp             TTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCE----EEEECCCCSCEEEEEEET--T
T ss_pred             CCCeEEEeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeeccccee----eeEecccccceeEEecCC--C
Confidence                               001112333445566666666 89999999987554    556677888888777754  6


Q ss_pred             EEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          220 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       220 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      +|++++.||.|++||+...+....+..+..|...+.++.+++  +++++|+.||.|
T Consensus       229 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~s~Dg~i  282 (342)
T d2ovrb2         229 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTV  282 (342)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS--SEEEEEETTSEE
T ss_pred             EEEEEcCCCEEEEEecccccccccccccceeeeceeecccCC--CeeEEEcCCCEE
Confidence            899999999999999999999888876556777888877765  599999999975

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.5e-26  Score=176.94  Aligned_cols=202  Identities=13%  Similarity=0.151  Sum_probs=152.3

Q ss_pred             ceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeee-----------------------eeee--------ee
Q 023822           27 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL-----------------------KTIN--------SK   75 (276)
Q Consensus        27 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----------------------~~~~--------~~   75 (276)
                      ....++|...|.+++++++ ..+++++.|+++++|++...+..                       ..+.        ..
T Consensus        39 ~~~~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (287)
T d1pgua2          39 SSMHQDHSNLIVSLDNSKA-QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSV  117 (287)
T ss_dssp             TEEECCCCSCEEEEECCST-TCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CCCCCCCCCCEEEEEecCC-CeEEEEeeccccccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeec
Confidence            3446789999999999875 46788999999999987532210                       0000        00


Q ss_pred             eeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeec-ccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCce
Q 023822           76 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFK-GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK  154 (276)
Q Consensus        76 ~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  154 (276)
                      .......++++++..+++++.+  ++.+++|++...+....+. .|...+.+++|+|++++|++++.||.|++||+.+++
T Consensus       118 ~~~~~~~~~~~~~~~~~v~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~  195 (287)
T d1pgua2         118 RLNSPGSAVSLSQNYVAVGLEE--GNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE  195 (287)
T ss_dssp             ECSSCEEEEEECSSEEEEEETT--TSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             cccceeeeeeccCcceeeeccc--cceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccc
Confidence            1112345677788888888762  4579999987766555543 477889999999999999999999999999999887


Q ss_pred             eeeeE---eecCCCeeEecCC----------CcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcE
Q 023822          155 CQGLL---RVQGRPAAAYDDQ----------GLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRL  220 (276)
Q Consensus       155 ~~~~~---~~~~~~~~~~~~~----------~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  220 (276)
                      .....   |...+.+++|+|.          +.++++++ |+.|++||++....   ....+.+|...|++++|+|++. 
T Consensus       196 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~---~~~~~~~h~~~V~~v~~~~~~~-  271 (287)
T d1pgua2         196 VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK---IIKALNAHKDGVNNLLWETPST-  271 (287)
T ss_dssp             EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC---CEEETTSSTTCEEEEEEEETTE-
T ss_pred             cccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCe---EEEEeCCCCCCeEEEEECCCCE-
Confidence            65432   5566778888874          45677666 99999999976432   2455678999999999999875 


Q ss_pred             EEEeecCCcEEEEEC
Q 023822          221 MLLTTMEGHIHVLDS  235 (276)
Q Consensus       221 l~~~~~dg~i~i~d~  235 (276)
                      |++++.|+.|++|++
T Consensus       272 l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         272 LVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEEETTSCEEEEEE
T ss_pred             EEEEECCCeEEEEEE
Confidence            888999999999985

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=8.7e-27  Score=183.46  Aligned_cols=219  Identities=14%  Similarity=0.121  Sum_probs=170.3

Q ss_pred             EEEEcC-CCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeee
Q 023822           39 SMDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF  117 (276)
Q Consensus        39 ~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~  117 (276)
                      .-.||| ||+++|+++. |.|++||++.++..+.  .|...|.+++|+|+++.|++++... +..|++||.++++.. .+
T Consensus         7 ~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~-g~~v~v~d~~~~~~~-~~   81 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTRE-GDFLGIYDYRTGKAE-KF   81 (360)
T ss_dssp             EEEEEECGGGCEEEEET-TEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETT-EEEEEEEETTTCCEE-EC
T ss_pred             cccccCCCCCEEEEEEC-CeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCC-CCEEEEEECCCCcEE-Ee
Confidence            467999 9999999864 7999999988876653  5888999999999999998877521 247999999887654 56


Q ss_pred             cccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-----------CCeE
Q 023822          118 KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-----------GGYI  184 (276)
Q Consensus       118 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-----------d~~i  184 (276)
                      ..|...+.+++|+|++++|++++.++.+++|++.+++....+  +...+..++|+|++++|+.+.           ++.+
T Consensus        82 ~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~  161 (360)
T d1k32a3          82 EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAI  161 (360)
T ss_dssp             CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEE
T ss_pred             eCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccce
Confidence            679999999999999999999999999999999999887776  344567899999999988653           3468


Q ss_pred             EEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcE-------EEEeecCCCCCCceEEE
Q 023822          185 RMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL-------LSTYNVKPVSRNSTLEA  257 (276)
Q Consensus       185 ~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~~~v~~~  257 (276)
                      ++||+.+.+     ......+...+..++|+|+|++|++++.++.+.+|+......       ...+.   .+...+..+
T Consensus       162 ~v~d~~~~~-----~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~  233 (360)
T d1k32a3         162 HVYDMEGRK-----IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIP---LIPGSPNPT  233 (360)
T ss_dssp             EEEETTTTE-----EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEE---SSTTCCCGG
T ss_pred             eeeccccCc-----eeeecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEe---cccCccccc
Confidence            999998754     333445666788899999999999999999999999765432       22222   233344445


Q ss_pred             EECCCCcEEEEec
Q 023822          258 SFSPEGMFVISGR  270 (276)
Q Consensus       258 ~~s~~g~~l~~~~  270 (276)
                      .|++++..++++.
T Consensus       234 ~~s~~~~~~~~~~  246 (360)
T d1k32a3         234 KLVPRSMTSEAGE  246 (360)
T ss_dssp             GCCCGGGSCCCCC
T ss_pred             eECCCcCcccccc
Confidence            5666665554443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.95  E-value=2.5e-24  Score=165.19  Aligned_cols=239  Identities=11%  Similarity=0.105  Sum_probs=185.4

Q ss_pred             ccccceeeccCCCcEEEEEEcCCCCEEE-EeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCC
Q 023822           23 SMEVGMSFRDYNGRISSMDFHKSSSYLV-TASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE  101 (276)
Q Consensus        23 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~  101 (276)
                      +.+..+++... ..+..++|+|||++|+ +++.++.|++||+.+++.+..+..+. .+..+.|++++..+++....  ++
T Consensus        21 t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~   96 (301)
T d1l0qa2          21 SNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMA--SS   96 (301)
T ss_dssp             TTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETT--TT
T ss_pred             CCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccccccccccccccccc--cc
Confidence            34555566543 4578999999999875 66688999999999999999887765 56889999999988776653  88


Q ss_pred             ceEEEEccCCceeeeecccCcceEEEEeccCCCEEE-EeeCCCeEEEEeccCceeeeeEe-ecCCCeeEecCCCcEEEEe
Q 023822          102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFI-SGSLDRTVLLWDQRAEKCQGLLR-VQGRPAAAYDDQGLVFAVA  179 (276)
Q Consensus       102 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~  179 (276)
                      .+.+|+..+++....+..+ ....++.|+|+++.++ ++..++.+.+|+..+.+....+. ......+.++|++..++++
T Consensus        97 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (301)
T d1l0qa2          97 TLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVA  175 (301)
T ss_dssp             EEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEE
T ss_pred             eeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccceeee
Confidence            9999999999888887744 5568899999999665 55568889999999998888773 3445688999998877666


Q ss_pred             e--CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeec---CCcEEEEECCCCcEEEEeecCCCCCCce
Q 023822          180 F--GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM---EGHIHVLDSFRGTLLSTYNVKPVSRNST  254 (276)
Q Consensus       180 ~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~v  254 (276)
                      .  ++.+.+|+....+     ..........+..++|+++++.++.+..   ++.|++||..+++.+..+.    ....+
T Consensus       176 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~----~~~~~  246 (301)
T d1l0qa2         176 NFDSMSISVIDTVTNS-----VIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP----VGPDP  246 (301)
T ss_dssp             ETTTTEEEEEETTTTE-----EEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE----CCSSE
T ss_pred             ccccccccccccccee-----eeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEc----CCCCE
Confidence            6  4777788776533     2222223345778999999988876543   4689999999999998887    44668


Q ss_pred             EEEEECCCCcEE-EEecCCCCC
Q 023822          255 LEASFSPEGMFV-ISGRVSPFS  275 (276)
Q Consensus       255 ~~~~~s~~g~~l-~~~~~dg~v  275 (276)
                      ..++|+|||++| ++++.|+.|
T Consensus       247 ~~va~spdg~~l~va~~~~~~i  268 (301)
T d1l0qa2         247 AGIAVTPDGKKVYVALSFCNTV  268 (301)
T ss_dssp             EEEEECTTSSEEEEEETTTTEE
T ss_pred             EEEEEeCCCCEEEEEECCCCeE
Confidence            999999999987 577777764

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=1.5e-25  Score=180.98  Aligned_cols=244  Identities=11%  Similarity=0.039  Sum_probs=167.9

Q ss_pred             hccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeee--e---eeeeeceEEEEEeccCCeEEEecc
Q 023822           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKT--I---NSKKYGVDLVCFTSHPTTVIYSSK   96 (276)
Q Consensus        22 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--~---~~~~~~v~~~~~~~~~~~l~~~~~   96 (276)
                      .+.+.+.++..|. .+..++|+|||++|++++.|++|++||+.+++....  +   ..|...+.+++|+||++++++++.
T Consensus        50 ~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~  128 (426)
T d1hzua2          50 DSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAY  128 (426)
T ss_dssp             TTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE
T ss_pred             CCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeec
Confidence            4566777888774 589999999999999999999999999998874433  2   356666778888999999877664


Q ss_pred             CCCCCceEEEEccCCceeeeecccCcce-----------EEEEeccCCCEEEEeeC-CCeEEEEeccCceeeee--E-ee
Q 023822           97 NGWDESLRLLSLHDNKYLRYFKGHHDRV-----------VSLSLCSSKDCFISGSL-DRTVLLWDQRAEKCQGL--L-RV  161 (276)
Q Consensus        97 ~~~d~~i~~~d~~~~~~~~~~~~~~~~i-----------~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~--~-~~  161 (276)
                      .  ++.+.+||..++++...+..|...+           ..+.+++++..++.... .+.+.+++.........  + ..
T Consensus       129 ~--~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  206 (426)
T d1hzua2         129 W--PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAA  206 (426)
T ss_dssp             E--SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECC
T ss_pred             C--CCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccC
Confidence            2  8999999999998887776555443           34444555554433332 34454554443332211  1 23


Q ss_pred             cCCCeeEecCCCcEEEEee--CCeEEEEecccCCCC--------------------------------------------
Q 023822          162 QGRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEKG--------------------------------------------  195 (276)
Q Consensus       162 ~~~~~~~~~~~~~~l~~~~--d~~i~~~d~~~~~~~--------------------------------------------  195 (276)
                      .....+.++|+++++.++.  +..+.+++..+.+..                                            
T Consensus       207 ~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~  286 (426)
T d1hzua2         207 PFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPK  286 (426)
T ss_dssp             SSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTT
T ss_pred             CccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccc
Confidence            3344678888887766665  466666665543200                                            


Q ss_pred             ------CeeeeeecCCCCCceEEEECCCCcEEEE-------eecCCcEEEEECCCCcEEEEee------cCCCCCCceEE
Q 023822          196 ------PFDIFSVGGDISDANVVKFSNDGRLMLL-------TTMEGHIHVLDSFRGTLLSTYN------VKPVSRNSTLE  256 (276)
Q Consensus       196 ------~~~~~~~~~~~~~i~~~~~~~~~~~l~~-------~~~dg~i~i~d~~~~~~~~~~~------~~~~~~~~v~~  256 (276)
                            ......+.+|...+..++|+|++++|++       ++.|++|+|||+.+++...++.      ....+...+..
T Consensus       287 ~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~  366 (426)
T d1hzua2         287 NHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQ  366 (426)
T ss_dssp             TCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEE
T ss_pred             ccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEE
Confidence                  0112335567778999999999999994       4568899999999998776553      12235667999


Q ss_pred             EEECCCCcEEEE
Q 023822          257 ASFSPEGMFVIS  268 (276)
Q Consensus       257 ~~~s~~g~~l~~  268 (276)
                      ++|||||++++.
T Consensus       367 ~~fSpDGk~i~v  378 (426)
T d1hzua2         367 PEYNKRGDEVWF  378 (426)
T ss_dssp             EEECSSSSEEEE
T ss_pred             EEECCCCCEEEE
Confidence            999999997743

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=7.7e-26  Score=175.97  Aligned_cols=206  Identities=10%  Similarity=0.066  Sum_probs=146.5

Q ss_pred             eeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceee---eecccCcceEEEEeccCC-CEEEEeeCC
Q 023822           67 TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR---YFKGHHDRVVSLSLCSSK-DCFISGSLD  142 (276)
Q Consensus        67 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~---~~~~~~~~i~~~~~~~~~-~~l~~~~~d  142 (276)
                      +.++..++|+..|++++|+|++++|++++.   |++|++||++++....   ...+|..+|.+++|+|++ .+|++|+.|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~---Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d   78 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSW---DGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ   78 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEET---TSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETT
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEEC---CCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccc
Confidence            456777899999999999999999999998   9999999998765433   334699999999999865 589999999


Q ss_pred             CeEEEEeccCceeeeeEee--cC-CCeeEecCCCcEEEEe-eCCeEEEEecccCCCCCeeeeeecCC--CCCceEEEECC
Q 023822          143 RTVLLWDQRAEKCQGLLRV--QG-RPAAAYDDQGLVFAVA-FGGYIRMFDARKYEKGPFDIFSVGGD--ISDANVVKFSN  216 (276)
Q Consensus       143 ~~i~iwd~~~~~~~~~~~~--~~-~~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~--~~~i~~~~~~~  216 (276)
                      +.|++|++...........  .. .....+.++...++++ .++.+++||++..............+  ........+.+
T Consensus        79 ~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (342)
T d1yfqa_          79 GEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT  158 (342)
T ss_dssp             SCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE
T ss_pred             cceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeec
Confidence            9999999988766655522  22 2234445555555554 49999999998765433333222222  22344556667


Q ss_pred             CCcEEEEeecCCcEEEEECCCCcEEEEe----------------------------------------------------
Q 023822          217 DGRLMLLTTMEGHIHVLDSFRGTLLSTY----------------------------------------------------  244 (276)
Q Consensus       217 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~----------------------------------------------------  244 (276)
                      .+..+++++.|+.|++||+...+.....                                                    
T Consensus       159 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~  238 (342)
T d1yfqa_         159 NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF  238 (342)
T ss_dssp             CSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE
T ss_pred             cCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecccccee
Confidence            7777778888888888876543211000                                                    


Q ss_pred             ------ecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          245 ------NVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       245 ------~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                            .....|...+++++|+|++++|++|+.||.|
T Consensus       239 ~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v  275 (342)
T d1yfqa_         239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGII  275 (342)
T ss_dssp             ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCE
T ss_pred             eeeeeccCCCcccccceeEEecCCccEEEEECCCCEE
Confidence                  0001344568899999999999999999986

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=5.4e-26  Score=181.69  Aligned_cols=182  Identities=13%  Similarity=0.164  Sum_probs=141.4

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeee------eeeeeceEEEEEeccCCeEEEeccCCCCC---
Q 023822           31 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTI------NSKKYGVDLVCFTSHPTTVIYSSKNGWDE---  101 (276)
Q Consensus        31 ~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~~~~d~---  101 (276)
                      ..+...+++++|+|++ +||+|+.|++|+|||+.+++++..+      ..|..+|.+++|+|++++|++++.   |+   
T Consensus       181 ~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~---D~t~~  256 (393)
T d1sq9a_         181 MTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHD---SNSFG  256 (393)
T ss_dssp             SSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEE---ETTEE
T ss_pred             cCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecC---CCCcc
Confidence            3456678999999987 8999999999999999998877654      457889999999999999999987   65   


Q ss_pred             ceEEEEccCCceeeeec-------------ccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEee--cCCC-
Q 023822          102 SLRLLSLHDNKYLRYFK-------------GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV--QGRP-  165 (276)
Q Consensus       102 ~i~~~d~~~~~~~~~~~-------------~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~-  165 (276)
                      .|++||+++++.+..+.             +|.+.|++++|+|++++|++++.|++|++||+++++++..+..  ..+. 
T Consensus       257 ~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~  336 (393)
T d1sq9a_         257 CITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEI  336 (393)
T ss_dssp             EEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSS
T ss_pred             eeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccC
Confidence            59999999988777653             7999999999999999999999999999999999999998843  3343 


Q ss_pred             ---eeEecCCCcEEEEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEE
Q 023822          166 ---AAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD  234 (276)
Q Consensus       166 ---~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  234 (276)
                         .++++|++..++.+.  ...++.+.....    . ..           .......+++++.|+.|++|.
T Consensus       337 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----~-~~-----------~~~~~~~~~~~~~d~~ir~~~  390 (393)
T d1sq9a_         337 EEDILAVDEHGDSLAEPG--VFDVKFLKKGWR----S-GM-----------GADLNESLCCVCLDRSIRWFR  390 (393)
T ss_dssp             GGGCCCBCTTSCBCSSCC--EEEEEEECTTTS----B-ST-----------TCTTSCEEEEEETTTEEEEEE
T ss_pred             CccEEEECCCCCEEEEcc--cceEEECccCce----e-cc-----------ccCCCCEEEEEEcCCeEEEEe
Confidence               578999988765443  112222211111    0 00           011235688899999999996

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.93  E-value=1e-23  Score=164.18  Aligned_cols=219  Identities=11%  Similarity=0.007  Sum_probs=169.7

Q ss_pred             CEEEEeecCCeEEEEEccCCeeeeeeeee--eeceEEEEEeccCCeEEEe-ccCCCCCceEEEEccCCceeeeecccC--
Q 023822           47 SYLVTASDDESIRLYDVTAATCLKTINSK--KYGVDLVCFTSHPTTVIYS-SKNGWDESLRLLSLHDNKYLRYFKGHH--  121 (276)
Q Consensus        47 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~-~~~~~d~~i~~~d~~~~~~~~~~~~~~--  121 (276)
                      ++|++++.|++|++||+++++.+..+..+  ...+..++|+||+++++++ +.   ++.|.+||+.+++.+..+..+.  
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~---~~~v~v~D~~t~~~~~~~~~~~~~   78 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNK---SESLVKIDLVTGETLGRIDLSTPE   78 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETT---TTEEEEEETTTCCEEEEEECCBTT
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECC---CCeEEEEECCCCcEEEEEecCCCc
Confidence            58999999999999999999999988654  3457899999999998654 44   8999999999999888776543  


Q ss_pred             ---cceEEEEeccCCCEEEEee------------CCCeEEEEeccCceeeeeEe-ecCCCeeEecCCCcEEEEeeCCeEE
Q 023822          122 ---DRVVSLSLCSSKDCFISGS------------LDRTVLLWDQRAEKCQGLLR-VQGRPAAAYDDQGLVFAVAFGGYIR  185 (276)
Q Consensus       122 ---~~i~~~~~~~~~~~l~~~~------------~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~d~~i~  185 (276)
                         ..+..++|+|++++++++.            .+..+.+||..+++....+. ...+..++++|++++++++. +.+.
T Consensus        79 ~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-~~~~  157 (337)
T d1pbyb_          79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG-RDLH  157 (337)
T ss_dssp             EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES-SSEE
T ss_pred             ccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEc-CCcc
Confidence               3456789999999888776            35789999999998888773 44567899999998887765 4467


Q ss_pred             EEecccCCCC--------------------------------------------------------------Ceeeeeec
Q 023822          186 MFDARKYEKG--------------------------------------------------------------PFDIFSVG  203 (276)
Q Consensus       186 ~~d~~~~~~~--------------------------------------------------------------~~~~~~~~  203 (276)
                      +||..+.+..                                                              ........
T Consensus       158 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (337)
T d1pbyb_         158 VMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR  237 (337)
T ss_dssp             EEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE
T ss_pred             eeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEec
Confidence            7887653200                                                              00000111


Q ss_pred             CCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          204 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       204 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      .+...+..+.++|++.+++.+  ++.|++||+.+++.+..+.    +...+.+++|+|||++|++++.||.|
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~----~~~~~~~~~~s~dG~~l~v~~~~~~i  303 (337)
T d1pbyb_         238 IMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP----LPHSYYSVNVSTDGSTVWLGGALGDL  303 (337)
T ss_dssp             ECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE----CSSCCCEEEECTTSCEEEEESBSSEE
T ss_pred             CCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc----CCCCEEEEEECCCCCEEEEEeCCCcE
Confidence            233345567788888877655  5789999999999999887    56778999999999999999999865

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.92  E-value=1.6e-23  Score=163.56  Aligned_cols=227  Identities=11%  Similarity=0.049  Sum_probs=166.2

Q ss_pred             EEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeee-eeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeec
Q 023822           40 MDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFK  118 (276)
Q Consensus        40 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~  118 (276)
                      ++|++++++|++++.|++|.+||+++++.+.++.. +...+..++|+||++++++++..  ++.|.+||+.+++.+..+.
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~--~~~v~~~d~~t~~~~~~~~   79 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH--YGDIYGIDLDTCKNTFHAN   79 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETT--TTEEEEEETTTTEEEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECC--CCcEEEEeCccCeeeeeec
Confidence            57899999999999999999999999999998874 45568899999999998666532  8999999999998877664


Q ss_pred             ccC------cceEEEEeccCCCEEEEee------------CCCeEEEEeccCceeeeeEe----ecCCCeeEecCCCcEE
Q 023822          119 GHH------DRVVSLSLCSSKDCFISGS------------LDRTVLLWDQRAEKCQGLLR----VQGRPAAAYDDQGLVF  176 (276)
Q Consensus       119 ~~~------~~i~~~~~~~~~~~l~~~~------------~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~l  176 (276)
                      ...      ..+..++|+|||+++++++            .++.+.+||..+++....+.    ......+.++++++++
T Consensus        80 ~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (346)
T d1jmxb_          80 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLY  159 (346)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEE
T ss_pred             ccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEE
Confidence            322      2456799999999887765            46788999988776554431    2234455666666655


Q ss_pred             EEeeCCeEEEEecccCCC--------------------------------------------------------------
Q 023822          177 AVAFGGYIRMFDARKYEK--------------------------------------------------------------  194 (276)
Q Consensus       177 ~~~~d~~i~~~d~~~~~~--------------------------------------------------------------  194 (276)
                      +.+  +.+.+|++.+++.                                                              
T Consensus       160 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (346)
T d1jmxb_         160 VAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL  237 (346)
T ss_dssp             EES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred             EeC--CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEEC
Confidence            543  3455555443210                                                              


Q ss_pred             --CCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCC
Q 023822          195 --GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVS  272 (276)
Q Consensus       195 --~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  272 (276)
                        ..........+...+..+.+++++.+++.... +.|.+||..+++.+..+.    +...+.+++|+|||++|++++.|
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~----~~~~~~~va~s~DG~~l~v~~~d  312 (346)
T d1jmxb_         238 KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAAN----LDHTYYCVAFDKKGDKLYLGGTF  312 (346)
T ss_dssp             TTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEE----CSSCCCEEEECSSSSCEEEESBS
T ss_pred             CCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEc----CCCCEEEEEEcCCCCEEEEEeCC
Confidence              00001112224445667788888877776654 579999999999998887    45678999999999999999999


Q ss_pred             CCC
Q 023822          273 PFS  275 (276)
Q Consensus       273 g~v  275 (276)
                      |.|
T Consensus       313 ~~v  315 (346)
T d1jmxb_         313 NDL  315 (346)
T ss_dssp             SEE
T ss_pred             CcE
Confidence            865

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=2.6e-24  Score=173.59  Aligned_cols=167  Identities=11%  Similarity=0.037  Sum_probs=128.0

Q ss_pred             hccccceeeccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCee--eeee---eeeeeceEEEEEeccCCeEEE-ec
Q 023822           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATC--LKTI---NSKKYGVDLVCFTSHPTTVIY-SS   95 (276)
Q Consensus        22 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~---~~~~~~v~~~~~~~~~~~l~~-~~   95 (276)
                      .+.+.+..+..|. .+..++|+|||++|++++.|+.+++||+.+++.  ...+   ..|.+.+.+..|+||++++++ +.
T Consensus        50 ~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~  128 (432)
T d1qksa2          50 STYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAY  128 (432)
T ss_dssp             TTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE
T ss_pred             CCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcC
Confidence            4567777887774 699999999999999999999999999987753  2232   355666777788899998754 54


Q ss_pred             cCCCCCceEEEEccCCceeeeeccc-----------CcceEEEEeccCCCEE-EEeeCCCeEEEEeccCceeeee--Ee-
Q 023822           96 KNGWDESLRLLSLHDNKYLRYFKGH-----------HDRVVSLSLCSSKDCF-ISGSLDRTVLLWDQRAEKCQGL--LR-  160 (276)
Q Consensus        96 ~~~~d~~i~~~d~~~~~~~~~~~~~-----------~~~i~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~--~~-  160 (276)
                      .   ++.|++||..+++++..+..|           ......+.++|++..+ ++...++.|.+||..+.+....  +. 
T Consensus       129 ~---~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~  205 (432)
T d1qksa2         129 W---PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISA  205 (432)
T ss_dssp             E---TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEEC
T ss_pred             C---CCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcc
Confidence            4   999999999999988776543           3445678899998865 5666789999999987765443  32 


Q ss_pred             ecCCCeeEecCCCcEEEEee--CCeEEEEecccC
Q 023822          161 VQGRPAAAYDDQGLVFAVAF--GGYIRMFDARKY  192 (276)
Q Consensus       161 ~~~~~~~~~~~~~~~l~~~~--d~~i~~~d~~~~  192 (276)
                      ......++++|++++++++.  ++.+.++|.++.
T Consensus       206 g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~  239 (432)
T d1qksa2         206 ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG  239 (432)
T ss_dssp             CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             cCccccceECCCCCEEEEeccccceEEEeecccc
Confidence            33456899999998777666  688999988653

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.91  E-value=3.1e-22  Score=155.67  Aligned_cols=215  Identities=13%  Similarity=0.018  Sum_probs=160.4

Q ss_pred             ccccceeecc--CCCcEEEEEEcCCCCEE-EEeecCCeEEEEEccCCeeeeeeeeee-----eceEEEEEeccCCeEEEe
Q 023822           23 SMEVGMSFRD--YNGRISSMDFHKSSSYL-VTASDDESIRLYDVTAATCLKTINSKK-----YGVDLVCFTSHPTTVIYS   94 (276)
Q Consensus        23 ~~~~~~~~~~--h~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~   94 (276)
                      +.+.+..+..  +...+.+++|+|||+++ ++++.++.|.+||+.+++.+..+..+.     ..+..++|+|++++++++
T Consensus        20 s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~   99 (337)
T d1pbyb_          20 KMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIY   99 (337)
T ss_dssp             TTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEE
T ss_pred             CCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEe
Confidence            3445555543  44567899999999987 466789999999999999988876543     345689999999999887


Q ss_pred             ccC---------CCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEee----
Q 023822           95 SKN---------GWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV----  161 (276)
Q Consensus        95 ~~~---------~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----  161 (276)
                      ...         ..+..+.+||..+++....+. +...+..++|+|+++++++++.+  +.+||..+++....+..    
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~  176 (337)
T d1pbyb_         100 ESPVRLELTHFEVQPTRVALYDAETLSRRKAFE-APRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWE  176 (337)
T ss_dssp             EEEEEECSSCEEECCCEEEEEETTTTEEEEEEE-CCSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTT
T ss_pred             ecCCcceeeeccccccceeeccccCCeEEEecc-ccCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCcc
Confidence            631         016789999999998888776 44567899999999999988754  67788776554333200    


Q ss_pred             ----------------------------------------------------------------cCCCeeEecCCCcEEE
Q 023822          162 ----------------------------------------------------------------QGRPAAAYDDQGLVFA  177 (276)
Q Consensus       162 ----------------------------------------------------------------~~~~~~~~~~~~~~l~  177 (276)
                                                                                      .....+.++|++.+++
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (337)
T d1pbyb_         177 AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAF  256 (337)
T ss_dssp             TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred             ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEE
Confidence                                                                            0011334556666655


Q ss_pred             EeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeec
Q 023822          178 VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV  246 (276)
Q Consensus       178 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  246 (276)
                      +. ++.|++||+++.+.    .... .+...+.+++|+|||++|++++.|+.|++||..+++.+.++..
T Consensus       257 ~~-~~~i~v~d~~~~~~----~~~~-~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         257 GA-YNVLESFDLEKNAS----IKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             EE-ESEEEEEETTTTEE----EEEE-ECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             Ec-cccEEEEECCCCcE----EEEE-cCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence            44 68899999988653    2222 3455789999999999999999999999999999999998873

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=1.7e-22  Score=162.96  Aligned_cols=188  Identities=13%  Similarity=0.100  Sum_probs=134.4

Q ss_pred             EEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeee-----ecccCc
Q 023822           48 YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRY-----FKGHHD  122 (276)
Q Consensus        48 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~-----~~~~~~  122 (276)
                      ++++.+.||+|+|||+.+++.+.++..+. .+..++|+|||+++++++.   |+.|++||+.+++....     ..+|..
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~---d~~v~vwd~~t~~~~~~~~i~~~~~~~~  109 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGR---DARIDMIDLWAKEPTKVAEIKIGIEARS  109 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEET---TSEEEEEETTSSSCEEEEEEECCSEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeC---CCCEEEEEccCCceeEEEEEeCCCCCcc
Confidence            55778899999999999999999998775 5899999999999999988   99999999998875432     235666


Q ss_pred             ceEEEEeccCCCEEEE-eeCCCeEEEEeccCceeeeeEe--ecCCC-----------eeEecCCCcEEEEee--CCeEEE
Q 023822          123 RVVSLSLCSSKDCFIS-GSLDRTVLLWDQRAEKCQGLLR--VQGRP-----------AAAYDDQGLVFAVAF--GGYIRM  186 (276)
Q Consensus       123 ~i~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~--~~~~~-----------~~~~~~~~~~l~~~~--d~~i~~  186 (276)
                      .+.+++|+|||+++++ +..++.+.+||..+.++...+.  ...+.           .+..++++..+....  .+.+.+
T Consensus       110 ~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~  189 (426)
T d1hzua2         110 VESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLL  189 (426)
T ss_dssp             EEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred             eEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence            7778889999997654 4578999999999988777662  22233           344455554444443  355555


Q ss_pred             EecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEee-cCCcEEEEECCCCcEEE
Q 023822          187 FDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGTLLS  242 (276)
Q Consensus       187 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~  242 (276)
                      ++.......   ......+...+..++|+|++++++++. .+..+.+++..+++.+.
T Consensus       190 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~  243 (426)
T d1hzua2         190 VNYKDIDNL---TVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSA  243 (426)
T ss_dssp             EECSSSSSC---EEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEE
T ss_pred             EEeccccce---eeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEE
Confidence            555443321   122223556788899999998877765 34557777766655443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.91  E-value=2.9e-22  Score=161.52  Aligned_cols=196  Identities=11%  Similarity=0.067  Sum_probs=149.7

Q ss_pred             cCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCcee--ee---e
Q 023822           43 HKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL--RY---F  117 (276)
Q Consensus        43 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~--~~---~  117 (276)
                      +++.-++++.+.||+|.|||..+++++..+..+. .+..++|+|||+++++++.   |+.+.+||+.+++..  ..   .
T Consensus        29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~---dg~v~~~d~~t~~~~~~~~i~~~  104 (432)
T d1qksa2          29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGR---DGKVNMIDLWMKEPTTVAEIKIG  104 (432)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEET---TSEEEEEETTSSSCCEEEEEECC
T ss_pred             CCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcC---CCCEEEEEeeCCCceEEEEEecC
Confidence            3333345889999999999999999999998774 6999999999999999987   999999999887642  22   2


Q ss_pred             cccCcceEEEEeccCCCEE-EEeeCCCeEEEEeccCceeeeeEeec-------------CCCeeEecCCCcEEEEee--C
Q 023822          118 KGHHDRVVSLSLCSSKDCF-ISGSLDRTVLLWDQRAEKCQGLLRVQ-------------GRPAAAYDDQGLVFAVAF--G  181 (276)
Q Consensus       118 ~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~~--d  181 (276)
                      ..|.+.+.+..|+|||++| +++..++.|++||..+++.+..+...             ....+.++|++..++.+.  +
T Consensus       105 ~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~  184 (432)
T d1qksa2         105 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET  184 (432)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccC
Confidence            3566667777889999975 67888999999999999887766221             122467888887665554  6


Q ss_pred             CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeec-CCcEEEEECCCCcEEEEee
Q 023822          182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFRGTLLSTYN  245 (276)
Q Consensus       182 ~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~  245 (276)
                      +.|.+||....+..  .+..+ .+...+..++|+|+|+++++++. ++.+.++|..+++....+.
T Consensus       185 ~~i~~~d~~~~~~~--~~~~i-~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~  246 (432)
T d1qksa2         185 GKILLVDYTDLNNL--KTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED  246 (432)
T ss_dssp             TEEEEEETTCSSEE--EEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             CeEEEEEccCCCcc--eEEEE-cccCccccceECCCCCEEEEeccccceEEEeecccceEEEEec
Confidence            99999998775431  12222 23346788999999998877765 5679999988877766543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.89  E-value=2.3e-20  Score=142.83  Aligned_cols=210  Identities=13%  Similarity=0.186  Sum_probs=164.7

Q ss_pred             EEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEe
Q 023822           50 VTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSL  129 (276)
Q Consensus        50 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~  129 (276)
                      ++++.|++|.+||+++++.+.++.... .+..++|+|+++++++++..  ++.|++||+.+++.+..+..+.. +..++|
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~g~-~p~~va~spdG~~l~v~~~~--~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~   81 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAH--SNDVSIIDTATNNVIATVPAGSS-PQGVAV   81 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGG--GTEEEEEETTTTEEEEEEECSSS-EEEEEE
T ss_pred             EEECCCCEEEEEECCCCeEEEEEECCC-CceEEEEeCCCCEEEEEECC--CCEEEEEECCCCceeeeeecccc-cccccc
Confidence            456789999999999999998887553 57889999999988654431  89999999999999988876654 588999


Q ss_pred             ccCCCEEE-EeeCCCeEEEEeccCceeeeeEee-cCCCeeEecCCCcEEEEee--CCeEEEEecccCCCCCeeeeeecCC
Q 023822          130 CSSKDCFI-SGSLDRTVLLWDQRAEKCQGLLRV-QGRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDIFSVGGD  205 (276)
Q Consensus       130 ~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~  205 (276)
                      ++++..++ ++..++.+.+|+..+++....+.. .....+.++|++..+..+.  ++.+.+|+..+...    ..... +
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~  156 (301)
T d1l0qa2          82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV----INTVS-V  156 (301)
T ss_dssp             CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE----EEEEE-C
T ss_pred             ccccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccce----eeecc-c
Confidence            99998554 556678999999999988887743 3456899999998776555  78999999987543    22222 3


Q ss_pred             CCCceEEEECCCCcEEEEeecC-CcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCC
Q 023822          206 ISDANVVKFSNDGRLMLLTTME-GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVS  272 (276)
Q Consensus       206 ~~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  272 (276)
                      ...+..++++|+++.+++++.+ +.+.+|+....+......    ....+..++|+++++.++.++.+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~v~~~~  220 (301)
T d1l0qa2         157 GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK----VEAAPSGIAVNPEGTKAYVTNVD  220 (301)
T ss_dssp             CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE----CSSEEEEEEECTTSSEEEEEEEC
T ss_pred             CCCceEEEeeccccceeeecccccccccccccceeeeeccc----ccCCcceeecccccccccccccc
Confidence            3457889999999888877655 667888888777777776    45677889999999988776544

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=5.5e-20  Score=142.75  Aligned_cols=239  Identities=11%  Similarity=0.093  Sum_probs=165.2

Q ss_pred             cCCCcEEEEEEcCCCCEEEEee-cCCeEEEEEccCCeeeeeee---eeeeceEEEEEeccCCeEEEeccCCCCCceEEEE
Q 023822           32 DYNGRISSMDFHKSSSYLVTAS-DDESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS  107 (276)
Q Consensus        32 ~h~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d  107 (276)
                      .|.+.+..++|+|||++|++++ .|+.|++|++........+.   .+...+..++|+|++++++++...  ++.+.+|+
T Consensus        34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~--~~~v~~~~  111 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYN--AGNVSVTR  111 (333)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETT--TTEEEEEE
T ss_pred             cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccC--CCceeeec
Confidence            5778999999999999986555 58999999998654333332   233457789999999999998753  78899999


Q ss_pred             ccCCceeee--ecccCcceEEEEeccCCCEEEEeeC-CCeEEEEeccCceeeeeE--------eecCCCeeEecCCCcEE
Q 023822          108 LHDNKYLRY--FKGHHDRVVSLSLCSSKDCFISGSL-DRTVLLWDQRAEKCQGLL--------RVQGRPAAAYDDQGLVF  176 (276)
Q Consensus       108 ~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~--------~~~~~~~~~~~~~~~~l  176 (276)
                      .........  ...+...+.++.++|++++++.++. +..|.+|+..........        .......++|++++..+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~  191 (333)
T d1ri6a_         112 LEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYA  191 (333)
T ss_dssp             EETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEE
T ss_pred             cccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeE
Confidence            877654333  3456677889999999998777765 567999998765433222        11223478999999887


Q ss_pred             EEee--CCeEEEEecccCCCCCeeeeeec------CCCCCceEEEECCCCcEEEEe-ecCCcEEEEECCCCcEEEEeecC
Q 023822          177 AVAF--GGYIRMFDARKYEKGPFDIFSVG------GDISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTLLSTYNVK  247 (276)
Q Consensus       177 ~~~~--d~~i~~~d~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~  247 (276)
                      ....  .+...+|+...............      ........+++++++++++.. ..++.+.+|++............
T Consensus       192 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (333)
T d1ri6a_         192 YCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGF  271 (333)
T ss_dssp             EEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEE
T ss_pred             EeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEE
Confidence            7665  57788888765432221111111      122345678999999877665 45678999988765443333221


Q ss_pred             CCCCCceEEEEECCCCcEEEEecCC
Q 023822          248 PVSRNSTLEASFSPEGMFVISGRVS  272 (276)
Q Consensus       248 ~~~~~~v~~~~~s~~g~~l~~~~~d  272 (276)
                      ......+..++|+|||++|++++.+
T Consensus       272 ~~~~~~p~~~a~spDGk~l~va~~~  296 (333)
T d1ri6a_         272 QPTETQPRGFNVDHSGKYLIAAGQK  296 (333)
T ss_dssp             EECSSSCCCEEECTTSSEEEEECTT
T ss_pred             eCCCCCeeEEEEeCCCCEEEEEECC
Confidence            1245667889999999998777654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.86  E-value=1.1e-20  Score=147.40  Aligned_cols=221  Identities=10%  Similarity=-0.051  Sum_probs=147.0

Q ss_pred             ccccceeec-cCCCcEEEEEEcCCCCEEE-EeecCCeEEEEEccCCeeeeeeeee------eeceEEEEEeccCCeEEEe
Q 023822           23 SMEVGMSFR-DYNGRISSMDFHKSSSYLV-TASDDESIRLYDVTAATCLKTINSK------KYGVDLVCFTSHPTTVIYS   94 (276)
Q Consensus        23 ~~~~~~~~~-~h~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~   94 (276)
                      +.+.+.+++ .|...+.+++|+|||++++ ++..++.|++||+.+++.+..+...      ...+..++|+|++++++++
T Consensus        27 t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~  106 (346)
T d1jmxb_          27 SDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYAT  106 (346)
T ss_dssp             TTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEE
T ss_pred             CCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEE
Confidence            345566665 4566788999999999875 5567899999999999988776532      2346789999999988776


Q ss_pred             ccC---------CCCCceEEEEccCCceeeeeccc--Ccce--------------------------------------E
Q 023822           95 SKN---------GWDESLRLLSLHDNKYLRYFKGH--HDRV--------------------------------------V  125 (276)
Q Consensus        95 ~~~---------~~d~~i~~~d~~~~~~~~~~~~~--~~~i--------------------------------------~  125 (276)
                      ...         ..+..+.+|+..+++....+..+  ...+                                      .
T Consensus       107 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (346)
T d1jmxb_         107 VNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNR  186 (346)
T ss_dssp             EEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCC
T ss_pred             ecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeCCcceEEEccCCCEEEEEecCCCcc
Confidence            521         01566777776655432221110  0111                                      1


Q ss_pred             EEEeccCCCEE--------------------------EEeeCCCeEEEEeccCceeeeeE---eecCCCeeEecCCCcEE
Q 023822          126 SLSLCSSKDCF--------------------------ISGSLDRTVLLWDQRAEKCQGLL---RVQGRPAAAYDDQGLVF  176 (276)
Q Consensus       126 ~~~~~~~~~~l--------------------------~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~l  176 (276)
                      .+.++|++..+                          +++..+..+.+||+.++......   +...+..+.+++++..+
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (346)
T d1jmxb_         187 KGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQ  266 (346)
T ss_dssp             TTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTE
T ss_pred             ceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEE
Confidence            11222322211                          12223345666777766554443   22234467778888777


Q ss_pred             EEeeCCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCC
Q 023822          177 AVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP  248 (276)
Q Consensus       177 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  248 (276)
                      +...++.|.+||..+++.    .... .+...+.+++|+|||++|++++.|+.|++||..+++.+..+....
T Consensus       267 ~~~~~~~v~v~d~~~~~~----~~~~-~~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~  333 (346)
T d1jmxb_         267 IYGVLNRLAKYDLKQRKL----IKAA-NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPG  333 (346)
T ss_dssp             EEEEESEEEEEETTTTEE----EEEE-ECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSS
T ss_pred             EEecCCeEEEEECCCCcE----EEEE-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECCC
Confidence            777778999999987653    2222 234578999999999999999999999999999999999998543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.86  E-value=1.2e-18  Score=137.37  Aligned_cols=243  Identities=9%  Similarity=-0.029  Sum_probs=171.2

Q ss_pred             hccccceeeccCCCcEEEEEEcCCCCEEEEee----------cCCeEEEEEccCCeeeeeeeeeeece-------EEEEE
Q 023822           22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTAS----------DDESIRLYDVTAATCLKTINSKKYGV-------DLVCF   84 (276)
Q Consensus        22 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~v-------~~~~~   84 (276)
                      .+.+.+.++..+..+  .++|+|||++|++++          .++.|.+||..+++.+..+..+....       ..+.|
T Consensus        55 ~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (373)
T d2madh_          55 GSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNAN  132 (373)
T ss_pred             CCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEE
Confidence            345556666666544  799999999998875          45789999999999888876554332       45788


Q ss_pred             eccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCC-EEEEeeCCCeEEEEeccCceeeeeEeec-
Q 023822           85 TSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQ-  162 (276)
Q Consensus        85 ~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~-  162 (276)
                      +++++.+++..... ++.+.+|+....+.....    ....++.++|+++ .+++.+.|+.+.+||....+........ 
T Consensus       133 s~dg~~~~v~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~  207 (373)
T d2madh_         133 TPNNADLLFFQFAA-GPAVGLVVQGGSSDDQLL----SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAM  207 (373)
T ss_pred             EeCCCcEEEEEEcC-CCceEEeeccCCeEEEEe----ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeec
Confidence            99998877665422 678889998876654433    3456788999987 4578889999999999988776655211 


Q ss_pred             -------CCCeeEecCCCcEEEEeeCCeEEEEecccCCCCCeeee--------eecCCCCCceEEEECCCCcEEE-----
Q 023822          163 -------GRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIF--------SVGGDISDANVVKFSNDGRLML-----  222 (276)
Q Consensus       163 -------~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~--------~~~~~~~~i~~~~~~~~~~~l~-----  222 (276)
                             ......+.+++.++..+.++.+.+|+............        ...........++++|++..++     
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  287 (373)
T d2madh_         208 LTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSE  287 (373)
T ss_pred             cccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCC
Confidence                   12245667778888887899999999876542111111        1111122334456666665444     


Q ss_pred             -----EeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcE--EEEecCCCCC
Q 023822          223 -----LTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF--VISGRVSPFS  275 (276)
Q Consensus       223 -----~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~--l~~~~~dg~v  275 (276)
                           ....++.+.+||..+++.+..+.    +...+..++|+|||+.  +++++.|++|
T Consensus       288 ~~~~~~~~~~~~v~~~d~~t~~~~~~~~----~~~~~~~~a~spDG~~~l~vt~~~d~~v  343 (373)
T d2madh_         288 QSAWKLHAAAKEVTSVTGLVGQTSSQIS----LGHDVDAISVAQDGGPDLYALSAGTEVL  343 (373)
T ss_pred             CceEEeecCCCeEEEEECCCCcEEEEec----CCCCeeEEEECCCCCEEEEEEeCCCCeE
Confidence                 44556789999999999998886    5677899999999984  4678888875

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=5.1e-19  Score=138.54  Aligned_cols=230  Identities=13%  Similarity=0.095  Sum_probs=158.7

Q ss_pred             ccccceeeccCCCcEEEEEEcCCCCEEEEee----------cCCeEEEEEccCCeeeeeeeeeee-------ceEEEEEe
Q 023822           23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTAS----------DDESIRLYDVTAATCLKTINSKKY-------GVDLVCFT   85 (276)
Q Consensus        23 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~~   85 (276)
                      +.+.+.++..+..+  .++|+|||++|++++          .|+.|++||+.+++.+..+..+..       ....++|+
T Consensus        37 tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s  114 (355)
T d2bbkh_          37 AGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLT  114 (355)
T ss_dssp             TTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEEC
T ss_pred             CCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEe
Confidence            34555566655444  699999999887653          478999999999998887754322       23568999


Q ss_pred             ccCCeEEEeccCCCCCceEEEEccCCceeeeecccC--------------------------------------------
Q 023822           86 SHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHH--------------------------------------------  121 (276)
Q Consensus        86 ~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~--------------------------------------------  121 (276)
                      +++++++++.... +..+.+|+..+++.+..+..+.                                            
T Consensus       115 ~dg~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~  193 (355)
T d2bbkh_         115 PDGKTLLFYQFSP-APAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPED  193 (355)
T ss_dssp             TTSSEEEEEECSS-SCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTT
T ss_pred             cCCCeeEEecCCC-CceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccccee
Confidence            9999988875422 6789999998876654432211                                            


Q ss_pred             -cceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--------------eecCCCeeEecCCCcEEEEee-C----
Q 023822          122 -DRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--------------RVQGRPAAAYDDQGLVFAVAF-G----  181 (276)
Q Consensus       122 -~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--------------~~~~~~~~~~~~~~~~l~~~~-d----  181 (276)
                       ..+....+.+++..++.++.++.+++|++..++.....              .......+++++++..++... +    
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~  273 (355)
T d2bbkh_         194 EFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEW  273 (355)
T ss_dssp             SCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTT
T ss_pred             cceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCce
Confidence             11223345556667778888999999998876532111              123345688999987776554 2    


Q ss_pred             ------CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCc--EEEEeecCCcEEEEECCCCcEEEEeecCCCCCCc
Q 023822          182 ------GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR--LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS  253 (276)
Q Consensus       182 ------~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  253 (276)
                            ..|.+||..+++.    ...+. ....+.+++|+|||+  ++++++.|+.|++||+++++.+.++.   .+...
T Consensus       274 ~~~~~~~~v~v~d~~t~~~----~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~---~~G~~  345 (355)
T d2bbkh_         274 RHKTASRFVVVLDAKTGER----LAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN---QLGHG  345 (355)
T ss_dssp             CTTSCEEEEEEEETTTCCE----EEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC---CCCSS
T ss_pred             eecCCCCeEEEEeCCCCcE----EEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEe---CcCCC
Confidence                  4799999988653    22222 234578999999997  45566789999999999999999987   45555


Q ss_pred             eEEEEECCCC
Q 023822          254 TLEASFSPEG  263 (276)
Q Consensus       254 v~~~~~s~~g  263 (276)
                      ...+.+.++|
T Consensus       346 p~~i~~~d~~  355 (355)
T d2bbkh_         346 PQVITTADMG  355 (355)
T ss_dssp             CCEEECCCCC
T ss_pred             ccEEEeCCCC
Confidence            5556555543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.83  E-value=1.5e-18  Score=135.87  Aligned_cols=234  Identities=10%  Similarity=-0.010  Sum_probs=158.9

Q ss_pred             cEEEEEEcCCCCEEEEee-----cCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccC-------CCCCce
Q 023822           36 RISSMDFHKSSSYLVTAS-----DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN-------GWDESL  103 (276)
Q Consensus        36 ~v~~~~~~~~~~~l~~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-------~~d~~i  103 (276)
                      ++.-.+.+||++.+++..     .++.|.+||..+++.+.++..+.  ...++|+||++++++++..       ..++.|
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v   80 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF--LPNPVVADDGSFIAHASTVFSRIARGERTDYV   80 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS--SCEEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCC--CCceEEcCCCCEEEEEeCCCccccccCCCCEE
Confidence            334446689999987653     45679999999999998887654  4479999999998875421       116889


Q ss_pred             EEEEccCCceeeeecccCc-------ceEEEEeccCCCEEEEee--CCCeEEEEeccCceeeeeEeec---------CCC
Q 023822          104 RLLSLHDNKYLRYFKGHHD-------RVVSLSLCSSKDCFISGS--LDRTVLLWDQRAEKCQGLLRVQ---------GRP  165 (276)
Q Consensus       104 ~~~d~~~~~~~~~~~~~~~-------~i~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~---------~~~  165 (276)
                      ++||..+++.+..+..+..       ....++|+|++++++.+.  .+..+.+||..+++....+...         ...
T Consensus        81 ~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
T d2bbkh_          81 EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDT  160 (355)
T ss_dssp             EEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTE
T ss_pred             EEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcc
Confidence            9999999998877653322       235688999999877664  4678999999887765443110         011


Q ss_pred             --------------------------------------eeEecCCCcEEE-EeeCCeEEEEecccCCCCCeeeeeec---
Q 023822          166 --------------------------------------AAAYDDQGLVFA-VAFGGYIRMFDARKYEKGPFDIFSVG---  203 (276)
Q Consensus       166 --------------------------------------~~~~~~~~~~l~-~~~d~~i~~~d~~~~~~~~~~~~~~~---  203 (276)
                                                            ...+.+++..++ .+.++.+++|++..++..........   
T Consensus       161 ~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  240 (355)
T d2bbkh_         161 FFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEA  240 (355)
T ss_dssp             EEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHH
T ss_pred             eEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccc
Confidence                                                  122333333333 34478899998877543111111100   


Q ss_pred             -----CCCCCceEEEECCCCcEEEEeecC----------CcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCc--EE
Q 023822          204 -----GDISDANVVKFSNDGRLMLLTTME----------GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM--FV  266 (276)
Q Consensus       204 -----~~~~~i~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l  266 (276)
                           ........++++|++..++....+          ..|.+||..+++.+..+.    +...+.+++|+|||+  ++
T Consensus       241 ~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~----~~~~~~~~a~spDG~~~l~  316 (355)
T d2bbkh_         241 ERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE----MGHEIDSINVSQDEKPLLY  316 (355)
T ss_dssp             HHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE----EEEEECEEEECCSSSCEEE
T ss_pred             eEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec----CCCCEEEEEEcCCCCeEEE
Confidence                 011234568999999888776543          369999999999998887    456788999999997  45


Q ss_pred             EEecCCCCC
Q 023822          267 ISGRVSPFS  275 (276)
Q Consensus       267 ~~~~~dg~v  275 (276)
                      ++++.|+.|
T Consensus       317 v~~~~d~~i  325 (355)
T d2bbkh_         317 ALSTGDKTL  325 (355)
T ss_dssp             EEETTTTEE
T ss_pred             EEECCCCEE
Confidence            667777754

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=5.7e-17  Score=125.47  Aligned_cols=221  Identities=9%  Similarity=0.073  Sum_probs=151.3

Q ss_pred             EEEEeecCCeEEEEEccCCeeeeee--eeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeee---cccCc
Q 023822           48 YLVTASDDESIRLYDVTAATCLKTI--NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF---KGHHD  122 (276)
Q Consensus        48 ~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~---~~~~~  122 (276)
                      .+++++.|++|++|++.....+..+  ..+.+.+..++|+||+++|++++..  ++.|++|++........+   ..+..
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~--d~~i~~~~i~~~~~~~~~~~~~~~~~   83 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRP--EFRVLAYRIAPDDGALTFAAESALPG   83 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETT--TTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECC--CCeEEEEEEeCCCCcEEEeeecccCC
Confidence            4567779999999999765433333  3566789999999999999766642  899999999876533332   23445


Q ss_pred             ceEEEEeccCCCEEEEeeC-CCeEEEEeccCceeeeeE----eecCCCeeEecCCCcEEEEee--CCeEEEEecccCCCC
Q 023822          123 RVVSLSLCSSKDCFISGSL-DRTVLLWDQRAEKCQGLL----RVQGRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEKG  195 (276)
Q Consensus       123 ~i~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~--d~~i~~~d~~~~~~~  195 (276)
                      .+..++|+|||++|++++. ++.+.+|+..........    +...+..+.++|+++.++.+.  +..|.+|+.......
T Consensus        84 ~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~  163 (333)
T d1ri6a_          84 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL  163 (333)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             CceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcc
Confidence            6778999999999888875 678999998877655444    334466899999998877776  688999998764432


Q ss_pred             Ceeee--eecCCCCCceEEEECCCCcEEEEee-cCCcEEEEECCCCc----EEEEeec---CCCCCCceEEEEECCCCcE
Q 023822          196 PFDIF--SVGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGT----LLSTYNV---KPVSRNSTLEASFSPEGMF  265 (276)
Q Consensus       196 ~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~----~~~~~~~---~~~~~~~v~~~~~s~~g~~  265 (276)
                      .....  ...........++|++++.+++... ..+...+|+.....    .......   ..........+++++++++
T Consensus       164 ~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~  243 (333)
T d1ri6a_         164 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH  243 (333)
T ss_dssp             EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred             eeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCc
Confidence            11111  1222334567899999998877654 45677888764332    1122211   1123345677899999987


Q ss_pred             EEEec
Q 023822          266 VISGR  270 (276)
Q Consensus       266 l~~~~  270 (276)
                      ++...
T Consensus       244 ~~~~~  248 (333)
T d1ri6a_         244 LYACD  248 (333)
T ss_dssp             EEEEE
T ss_pred             eeeec
Confidence            76554

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.74  E-value=3.1e-15  Score=117.56  Aligned_cols=238  Identities=8%  Similarity=-0.085  Sum_probs=159.7

Q ss_pred             eccCCCcEEEEEEcCCCCEEEEee-----cCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccC-------
Q 023822           30 FRDYNGRISSMDFHKSSSYLVTAS-----DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN-------   97 (276)
Q Consensus        30 ~~~h~~~v~~~~~~~~~~~l~~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-------   97 (276)
                      ...+.+++.+++++|||+.++...     .++.+.+||..+++.+.++..+..  ..++|+||+++++++...       
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~--~~~a~SpDG~~l~va~~~~~~~~~~   93 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL--PNPVAAHSGSEFALASTSFSRIAKG   93 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCC--ccEEEcCCCCEEEEEeecCCccccc
Confidence            346889999999999999987642     346799999999999998876553  379999999999987642       


Q ss_pred             CCCCceEEEEccCCceeeeecccCcce-------EEEEeccCCCEEEEee--CCCeEEEEeccCceeeeeEeecCCCeeE
Q 023822           98 GWDESLRLLSLHDNKYLRYFKGHHDRV-------VSLSLCSSKDCFISGS--LDRTVLLWDQRAEKCQGLLRVQGRPAAA  168 (276)
Q Consensus        98 ~~d~~i~~~d~~~~~~~~~~~~~~~~i-------~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~  168 (276)
                      ..++.|.+||..+++.+..+..+....       ..+.|+++++.++...  .++.+.+|+....+.....  ....++.
T Consensus        94 ~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  171 (373)
T d2madh_          94 KRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL--SSPTCYH  171 (373)
T ss_pred             ccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe--ccceeEE
Confidence            125789999999999888776555433       4578888888665544  3567889988876654443  2345788


Q ss_pred             ecCCCcEEE-Ee-eCCeEEEEecccCCCCCeeeeeec--CCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEe
Q 023822          169 YDDQGLVFA-VA-FGGYIRMFDARKYEKGPFDIFSVG--GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY  244 (276)
Q Consensus       169 ~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  244 (276)
                      ++|+++.+. +. .|+.+.+|+...............  ........+.+++++.+ +..+.++.+.+|+..++......
T Consensus       172 ~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~  250 (373)
T d2madh_         172 IHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI-VWPVYSGKILQADISAAGATNKA  250 (373)
T ss_pred             EecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceE-EEecCCceEEEEEcCCCeEEEEE
Confidence            899886543 33 389999999887654222111111  11122344566776654 45567889999998876543322


Q ss_pred             ecCC---------CCCCceEEEEECCCCcEEEEecCC
Q 023822          245 NVKP---------VSRNSTLEASFSPEGMFVISGRVS  272 (276)
Q Consensus       245 ~~~~---------~~~~~v~~~~~s~~g~~l~~~~~d  272 (276)
                      ....         ........+++++++..++....+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  287 (373)
T d2madh_         251 PIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSE  287 (373)
T ss_pred             eeccccCcEEeeeeccCcceeeEEecCCCeEEEecCC
Confidence            2100         012234456777887776655443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.72  E-value=1.8e-16  Score=125.15  Aligned_cols=240  Identities=9%  Similarity=0.035  Sum_probs=161.8

Q ss_pred             CCCcEEEEEEcCCCCEEEEe-ecCCeEEEEEccCCeeeeeeee-eeeceEEEEEeccCCeEEEeccCCCCC---------
Q 023822           33 YNGRISSMDFHKSSSYLVTA-SDDESIRLYDVTAATCLKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWDE---------  101 (276)
Q Consensus        33 h~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~d~---------  101 (276)
                      |.-.......+|||++|++. ..+++|.++|+.+++....+.. ....+..++|+|+++.+.+....  +.         
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~--~~~v~~~~dg~  147 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNA--EFVIPQPNDGT  147 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEE--CSCEESSCSSS
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEecc--CCcccccCccc
Confidence            44556667778999998665 4678999999999998887753 35678999999999854433221  22         


Q ss_pred             ---------ceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCC------------------------------
Q 023822          102 ---------SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLD------------------------------  142 (276)
Q Consensus       102 ---------~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------------------------------  142 (276)
                               .+..+|..+.+...++... .....+.|+|+|+++++.+.+                              
T Consensus       148 ~~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~  226 (441)
T d1qnia2         148 DFSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAV  226 (441)
T ss_dssp             CCCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHH
T ss_pred             ccccccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEe
Confidence                     2355788887777766533 456889999999988877654                              


Q ss_pred             -----------CeEEEEeccCceeeeeEe-ecCCCeeEecCCCcEEEEee--CCeEEEEecccCCC------CC-eeeee
Q 023822          143 -----------RTVLLWDQRAEKCQGLLR-VQGRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEK------GP-FDIFS  201 (276)
Q Consensus       143 -----------~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~--d~~i~~~d~~~~~~------~~-~~~~~  201 (276)
                                 +.+.+++....+.+..+. ......+.++|+|++++++.  ++++.+||+++.+.      .. ..+..
T Consensus       227 ~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~  306 (441)
T d1qnia2         227 KAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVA  306 (441)
T ss_dssp             HTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEE
T ss_pred             cCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEe
Confidence                       233334334334444442 23355799999999887776  89999999876331      00 00111


Q ss_pred             ecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCC----------CcEEEEeec--CCCCCCceEEEEECCCCcEEEEe
Q 023822          202 VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR----------GTLLSTYNV--KPVSRNSTLEASFSPEGMFVISG  269 (276)
Q Consensus       202 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~----------~~~~~~~~~--~~~~~~~v~~~~~s~~g~~l~~~  269 (276)
                      .....-.....+|+++|..+.+...|..|..|++..          ...+..+..  .++|...+.+.+++|||+||+++
T Consensus       307 ~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~  386 (441)
T d1qnia2         307 EPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVL  386 (441)
T ss_dssp             CCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEE
T ss_pred             ecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEec
Confidence            111112345578999999888889999999999741          123333321  12577777788899999999999


Q ss_pred             ---cCCCCC
Q 023822          270 ---RVSPFS  275 (276)
Q Consensus       270 ---~~dg~v  275 (276)
                         +.|.+.
T Consensus       387 ~k~s~dr~~  395 (441)
T d1qnia2         387 SKFSKDRFL  395 (441)
T ss_dssp             ESCCGGGSC
T ss_pred             CccccccCc
Confidence               666653

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.71  E-value=5e-16  Score=122.20  Aligned_cols=240  Identities=10%  Similarity=-0.043  Sum_probs=156.6

Q ss_pred             cccceeeccCCCcEEEEEEcCCCCEEEEee----------cCCeEEEEEccCCeeeeeeeeeee-------ceEEEEEec
Q 023822           24 MEVGMSFRDYNGRISSMDFHKSSSYLVTAS----------DDESIRLYDVTAATCLKTINSKKY-------GVDLVCFTS   86 (276)
Q Consensus        24 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~~~   86 (276)
                      .+...++.++..+  .++|+|||+.|++++          .|+.|++||..+++++..+..+..       ....++|+|
T Consensus        56 ~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~Sp  133 (368)
T d1mdah_          56 GVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA  133 (368)
T ss_dssp             TEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT
T ss_pred             CcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECC
Confidence            3444555555544  589999999988754          477899999999998888764432       234689999


Q ss_pred             cCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE-------
Q 023822           87 HPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-------  159 (276)
Q Consensus        87 ~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-------  159 (276)
                      |+++++++...  ++.+.+||+.+++....+..+.....   +......++..+.||++.++++.........       
T Consensus       134 DGk~l~va~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~  208 (368)
T d1mdah_         134 SSACLLFFLFG--SSAAAGLSVPGASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTG  208 (368)
T ss_dssp             TSSCEEEEECS--SSCEEEEEETTTEEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCT
T ss_pred             CCCEEEEEeCC--CCeEEEEECCCCcEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccccc
Confidence            99999988642  79999999999998887765543321   1122346667777888888887655433322       


Q ss_pred             -eecCCCeeEecCCCcEEEEeeCCeEEEEecccCCCCCeeeeee--------cCCCCCceEEEECCCCcEEEEeecC---
Q 023822          160 -RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSV--------GGDISDANVVKFSNDGRLMLLTTME---  227 (276)
Q Consensus       160 -~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~l~~~~~d---  227 (276)
                       +........+.+++..+... ++.+++++..............        .........++++|++..++....+   
T Consensus       209 ~~~~~~~~~~~~~~g~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~  287 (368)
T d1mdah_         209 AQNCSSQAAQANYPGMLVWAV-ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSR  287 (368)
T ss_dssp             TSCBCSCCEEETTTTEEEECB-SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSS
T ss_pred             ccccceeecccccCcEEEEec-CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCc
Confidence             11223356666776655433 4566666665533211000000        0011223458899998877665322   


Q ss_pred             ------CcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCc-E-EEEecCCCCC
Q 023822          228 ------GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM-F-VISGRVSPFS  275 (276)
Q Consensus       228 ------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~-l~~~~~dg~v  275 (276)
                            ..|.+||..+++.+..+.    ....+.+++|+|||+ + ++++..|+.+
T Consensus       288 ~~~~~~~~v~v~D~~t~~~~~~~~----~~~~~~~~a~spDG~~~ly~s~~~~~~v  339 (368)
T d1mdah_         288 SCLAAAENTSSVTASVGQTSGPIS----NGHDSDAIIAAQDGASDNYANSAGTEVL  339 (368)
T ss_dssp             CTTSCEEEEEEEESSSCCEEECCE----EEEEECEEEECCSSSCEEEEEETTTTEE
T ss_pred             eeecCCceEEEEECCCCcEeEEec----CCCceeEEEECCCCCEEEEEEeCCCCeE
Confidence                  359999999999988886    456788999999997 3 4566666654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.64  E-value=1.9e-14  Score=116.77  Aligned_cols=110  Identities=9%  Similarity=0.132  Sum_probs=87.1

Q ss_pred             eeeccCCCcEEEEEEcCCCCEEEEeec---------CCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCC
Q 023822           28 MSFRDYNGRISSMDFHKSSSYLVTASD---------DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG   98 (276)
Q Consensus        28 ~~~~~h~~~v~~~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~   98 (276)
                      ..+..|...|.++.|||||++|+.++.         ++.+.+||+++++. ..+..+...+..+.|+|||+.++...   
T Consensus        55 ~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~~---  130 (470)
T d2bgra1          55 STFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYVW---  130 (470)
T ss_dssp             TTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEEE---
T ss_pred             hhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEee---
Confidence            345677789999999999999998753         56789999998874 55777888899999999999999976   


Q ss_pred             CCCceEEEEccCCceeeeeccc------------------CcceEEEEeccCCCEEEEeeCC
Q 023822           99 WDESLRLLSLHDNKYLRYFKGH------------------HDRVVSLSLCSSKDCFISGSLD  142 (276)
Q Consensus        99 ~d~~i~~~d~~~~~~~~~~~~~------------------~~~i~~~~~~~~~~~l~~~~~d  142 (276)
                       ++.+++|+..+++..+....+                  .+....+.|+|||++|+....|
T Consensus       131 -~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         131 -NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             -TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred             -cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEec
Confidence             889999999888765543211                  2234568899999999887643

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.62  E-value=4.1e-13  Score=105.09  Aligned_cols=270  Identities=11%  Similarity=0.065  Sum_probs=154.3

Q ss_pred             CCcccCcccceeeeeehHHHhhccccceee-ccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCC-eeeeee-eeeee
Q 023822            1 MVGSQSEREDKVSLELSEEILQSMEVGMSF-RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA-TCLKTI-NSKKY   77 (276)
Q Consensus         1 ivg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~-~~~~~   77 (276)
                      +||.+.+......+.++.+. ..++..... ......+.-|+|+|+++.|+++.. +.+..|.+... ...... .....
T Consensus         6 ~vGtyt~~~~i~~~~fd~~~-~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~   83 (365)
T d1jofa_           6 MIGTWTPPGAIFTVQFDDEK-LTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGG   83 (365)
T ss_dssp             EEEESSSSCEEEEEEEETTT-TEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCS
T ss_pred             EEEeecCCCCEEEEEEcCCC-CeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCC
Confidence            35666554333445555444 234433332 234555677999999999988765 56788877643 222221 11223


Q ss_pred             ceEEEEEeccCCeEEEeccCCCCCceEEEEccCC-------------ce---eee-ecccCcceEEEEeccCCCEEEEee
Q 023822           78 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN-------------KY---LRY-FKGHHDRVVSLSLCSSKDCFISGS  140 (276)
Q Consensus        78 ~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~-------------~~---~~~-~~~~~~~i~~~~~~~~~~~l~~~~  140 (276)
                      ....+.++++++.+.+...+...+.+..+.+...             +.   ... -......+.++.|+|+|+++++++
T Consensus        84 ~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d  163 (365)
T d1jofa_          84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD  163 (365)
T ss_dssp             SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred             CcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEee
Confidence            4566788888875443322111455555543221             10   000 011223468999999999888776


Q ss_pred             C-CCeEEEEeccCceeeeeE-------eecCCCeeEecCCCcEEEEee--CCeEEEEecccCCCCCeeeee-ec------
Q 023822          141 L-DRTVLLWDQRAEKCQGLL-------RVQGRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDIFS-VG------  203 (276)
Q Consensus       141 ~-d~~i~iwd~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~--d~~i~~~d~~~~~~~~~~~~~-~~------  203 (276)
                      . ...|.+|+..........       .....+.++|+|+++++.+..  +++|.+|++............ ..      
T Consensus       164 ~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~  243 (365)
T d1jofa_         164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI  243 (365)
T ss_dssp             TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC
T ss_pred             CCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccc
Confidence            5 457888876543222211       123456799999999887766  799999998765432211111 00      


Q ss_pred             --------CCCCCceEEEECCCCcEEEEeec------CCcEEEEECCCCcEEEE---eecCCCCCCceEEEEECC-CCcE
Q 023822          204 --------GDISDANVVKFSNDGRLMLLTTM------EGHIHVLDSFRGTLLST---YNVKPVSRNSTLEASFSP-EGMF  265 (276)
Q Consensus       204 --------~~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~---~~~~~~~~~~v~~~~~s~-~g~~  265 (276)
                              ........+.++|+|++|+++..      .+.|..|++.....+..   +............++++| +|++
T Consensus       244 ~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~  323 (365)
T d1jofa_         244 PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEW  323 (365)
T ss_dssp             CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTE
T ss_pred             cccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCE
Confidence                    11122456899999999988743      22377777654332221   111112345567899998 8998


Q ss_pred             EEEecCC
Q 023822          266 VISGRVS  272 (276)
Q Consensus       266 l~~~~~d  272 (276)
                      |+++..+
T Consensus       324 l~va~~~  330 (365)
T d1jofa_         324 MAITDDQ  330 (365)
T ss_dssp             EEEECSS
T ss_pred             EEEEeCC
Confidence            8777543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.61  E-value=2.2e-12  Score=98.25  Aligned_cols=229  Identities=10%  Similarity=-0.006  Sum_probs=153.1

Q ss_pred             cEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCce-e
Q 023822           36 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY-L  114 (276)
Q Consensus        36 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~-~  114 (276)
                      .+..++++|||+++++...+++|..|+.. ++ ...+......+.+++|.++++.+++...   ++.+..++...... .
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~-~~~~~~~~~~~~gla~~~dG~l~v~~~~---~~~~~~~~~~~~~~~~  103 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPD-GN-QQIHATVEGKVSGLAFTSNGDLVATGWN---ADSIPVVSLVKSDGTV  103 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEEECSSEEEEEEECTTSCEEEEEEC---TTSCEEEEEECTTSCE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCC-CC-EEEEEcCCCCcceEEEcCCCCeEEEecC---CceEEEEEecccccce
Confidence            57889999999999999889999988855 33 3334445567899999999998887766   78888887654432 1


Q ss_pred             eee--cccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeec------------CCCeeEecCCCcEEEEee
Q 023822          115 RYF--KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ------------GRPAAAYDDQGLVFAVAF  180 (276)
Q Consensus       115 ~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------------~~~~~~~~~~~~~l~~~~  180 (276)
                      ..+  .........+++.++++++++.+.++.+..+|...+.........            ....+.++.+..+++...
T Consensus       104 ~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~  183 (302)
T d2p4oa1         104 ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTE  183 (302)
T ss_dssp             EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETT
T ss_pred             eeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCC
Confidence            222  123456789999999999988888999999998876544332111            111344444333333333


Q ss_pred             CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEE-
Q 023822          181 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF-  259 (276)
Q Consensus       181 d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~-  259 (276)
                      .+.|..++........  .............++++++|+++++...++.|..++.. ++........ ..-...++++| 
T Consensus       184 ~~~i~~~~~~~~~~~~--~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~-~~~~~pt~vafg  259 (302)
T d2p4oa1         184 KMLLLRIPVDSTDKPG--EPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE-QGVIGSTAVAFG  259 (302)
T ss_dssp             TTEEEEEEBCTTSCBC--CCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG-GTCTTEEEEEEC
T ss_pred             CCeEEecccccccccc--ccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEEecC-CCCCCceEEEEc
Confidence            7899988877543211  11111122346779999999988888888999999854 5443333211 13355789999 


Q ss_pred             --CCCCcEEEEecCCC
Q 023822          260 --SPEGMFVISGRVSP  273 (276)
Q Consensus       260 --s~~g~~l~~~~~dg  273 (276)
                        ++|++.|+.++..|
T Consensus       260 ~~~~D~~~Lyvtt~~g  275 (302)
T d2p4oa1         260 QTEGDCTAIYVVTNGG  275 (302)
T ss_dssp             CSTTTTTEEEEEECTT
T ss_pred             CCCCCCCEEEEECCCC
Confidence              77888887665543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.58  E-value=3.7e-13  Score=106.11  Aligned_cols=220  Identities=11%  Similarity=0.039  Sum_probs=144.2

Q ss_pred             EEEeecCCeEEEEEccCCeeeeeeee------------------------------eeeceEEEEEeccCCeEEEeccCC
Q 023822           49 LVTASDDESIRLYDVTAATCLKTINS------------------------------KKYGVDLVCFTSHPTTVIYSSKNG   98 (276)
Q Consensus        49 l~~~~~d~~i~iwd~~~~~~~~~~~~------------------------------~~~~v~~~~~~~~~~~l~~~~~~~   98 (276)
                      +++++.+|+|++|++.+++.++++..                              |..........|||+++++.... 
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~-   92 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKA-   92 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETT-
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCC-
Confidence            56888999999999999988877632                              11223344457899999888764 


Q ss_pred             CCCceEEEEccCCceeeeec-ccCcceEEEEeccCCC--EEEEeeCCC-----------------eEEEEeccCceeeee
Q 023822           99 WDESLRLLSLHDNKYLRYFK-GHHDRVVSLSLCSSKD--CFISGSLDR-----------------TVLLWDQRAEKCQGL  158 (276)
Q Consensus        99 ~d~~i~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~--~l~~~~~d~-----------------~i~iwd~~~~~~~~~  158 (276)
                       +..|.++|+.+++....+. .+...+..++|+|+++  +++..+.+.                 .+..+|..+.+....
T Consensus        93 -~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~q  171 (441)
T d1qnia2          93 -NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQ  171 (441)
T ss_dssp             -TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEE
T ss_pred             -CCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEE
Confidence             8999999999998877664 3566789999999998  444444332                 235578887777666


Q ss_pred             Ee-ecCCCeeEecCCCcEEEEee-C-Ce--------------EEEEe--------------------------cccCCCC
Q 023822          159 LR-VQGRPAAAYDDQGLVFAVAF-G-GY--------------IRMFD--------------------------ARKYEKG  195 (276)
Q Consensus       159 ~~-~~~~~~~~~~~~~~~l~~~~-d-~~--------------i~~~d--------------------------~~~~~~~  195 (276)
                      +. ......+.++|+|+++.+++ + ..              |.+.+                          ....+  
T Consensus       172 I~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~--  249 (441)
T d1qnia2         172 VIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESE--  249 (441)
T ss_dssp             EEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCS--
T ss_pred             EecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCc--
Confidence            63 33466899999998887765 2 11              11221                          11110  


Q ss_pred             CeeeeeecCCCCCceEEEECCCCcEEEE-eecCCcEEEEECCCCcEE--------EEeecCCCCCCceEEEEECCCCcEE
Q 023822          196 PFDIFSVGGDISDANVVKFSNDGRLMLL-TTMEGHIHVLDSFRGTLL--------STYNVKPVSRNSTLEASFSPEGMFV  266 (276)
Q Consensus       196 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~--------~~~~~~~~~~~~v~~~~~s~~g~~l  266 (276)
                        ....+... .....+.++|||+++++ +..+++|.+||+.+.+..        ..+.......-.....+|+++|..+
T Consensus       250 --v~~~IPvg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~y  326 (441)
T d1qnia2         250 --FTRYIPVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAY  326 (441)
T ss_dssp             --SEEEECCB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEE
T ss_pred             --eEEEEeCC-CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEE
Confidence              12222222 34577999999998755 567899999998652211        1111111122234556899999888


Q ss_pred             EEecCCCCC
Q 023822          267 ISGRVSPFS  275 (276)
Q Consensus       267 ~~~~~dg~v  275 (276)
                      .+...|..|
T Consensus       327 ts~~~ds~v  335 (441)
T d1qnia2         327 TTLFIDSQV  335 (441)
T ss_dssp             EEETTTTEE
T ss_pred             EcccccceE
Confidence            887777543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.57  E-value=1.2e-11  Score=94.64  Aligned_cols=233  Identities=10%  Similarity=0.041  Sum_probs=148.3

Q ss_pred             CcEEEEEEcCCCCEEEEeec-------CCeEEEEEccCCeeeeeeeee----eeceEEEEEeccCCeEEEeccCCCCCce
Q 023822           35 GRISSMDFHKSSSYLVTASD-------DESIRLYDVTAATCLKTINSK----KYGVDLVCFTSHPTTVIYSSKNGWDESL  103 (276)
Q Consensus        35 ~~v~~~~~~~~~~~l~~~~~-------d~~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~~~~d~~i  103 (276)
                      .....++|.++|+++++...       +|+|..||..+++........    ......+.|.++++.++++..   ...|
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~---~~~i   94 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM---RLGL   94 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET---TTEE
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEEC---CCeE
Confidence            34567899999997776432       467999998877654333221    223568999999998888876   6678


Q ss_pred             EEEEccCCceeeeecccC----cceEEEEeccCCCEEEEeeC---------------CCeEEEEeccCceeeeeE-eecC
Q 023822          104 RLLSLHDNKYLRYFKGHH----DRVVSLSLCSSKDCFISGSL---------------DRTVLLWDQRAEKCQGLL-RVQG  163 (276)
Q Consensus       104 ~~~d~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~---------------d~~i~iwd~~~~~~~~~~-~~~~  163 (276)
                      ..++..............    ...+.+++.++|++.++-..               .|.|..++... +..... ....
T Consensus        95 ~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~~~~~~~~~  173 (314)
T d1pjxa_          95 LVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQVDTAFQF  173 (314)
T ss_dssp             EEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEEEEEEEESS
T ss_pred             EEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-ceeEeeCCcce
Confidence            888876553322111111    13578999999987776432               23455555433 222222 3334


Q ss_pred             CCeeEecCCCc-----EEEEee-CCeEEEEecccCCCCC-eee-eeecC-CCCCceEEEECCCCcEEEEeecCCcEEEEE
Q 023822          164 RPAAAYDDQGL-----VFAVAF-GGYIRMFDARKYEKGP-FDI-FSVGG-DISDANVVKFSNDGRLMLLTTMEGHIHVLD  234 (276)
Q Consensus       164 ~~~~~~~~~~~-----~l~~~~-d~~i~~~d~~~~~~~~-~~~-~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  234 (276)
                      .+.++|+|++.     ++++.. .+.|..||+....... ... ..+.. .......+++.++|+++++....+.|.+||
T Consensus       174 pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~d  253 (314)
T d1pjxa_         174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFG  253 (314)
T ss_dssp             EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred             eeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEe
Confidence            45788888653     444433 7899999876532110 001 11111 222356799999999888777789999999


Q ss_pred             CCCCcEEEEeecCCCCCCceEEEEECCCCcEE-EEecCCCC
Q 023822          235 SFRGTLLSTYNVKPVSRNSTLEASFSPEGMFV-ISGRVSPF  274 (276)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~~~~dg~  274 (276)
                      ...++.+..+.   .....+++++|.||++.| ++.+.+|.
T Consensus       254 p~~g~~~~~i~---~p~~~~t~~afg~d~~~lyVt~~~~g~  291 (314)
T d1pjxa_         254 PDGGQPKMRIR---CPFEKPSNLHFKPQTKTIFVTEHENNA  291 (314)
T ss_dssp             TTCBSCSEEEE---CSSSCEEEEEECTTSSEEEEEETTTTE
T ss_pred             CCCCEEEEEEE---CCCCCEEEEEEeCCCCEEEEEECCCCc
Confidence            88888777776   345678899999999744 55555554

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.56  E-value=2.9e-12  Score=95.42  Aligned_cols=226  Identities=11%  Similarity=0.087  Sum_probs=145.2

Q ss_pred             cEEEEEEcCCCCEEEEe-ecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCcee
Q 023822           36 RISSMDFHKSSSYLVTA-SDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL  114 (276)
Q Consensus        36 ~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~  114 (276)
                      .-..+++.++|+..++. +..+.+..++...................+++.+++..+++...   .+.+++++-.+...+
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~---~~~i~~~~~~~~~~~   91 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFN---NRVVTLAAGSNNQTV   91 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETT---TEEEEECTTCSCCEE
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeee---eceeeeeeeccceee
Confidence            45799999999966654 45577777765543322222222234678899999887666554   666666655554444


Q ss_pred             eeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-CCeEEEEeccc
Q 023822          115 RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARK  191 (276)
Q Consensus       115 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~  191 (276)
                      ..... ......+++.++++++++-..+..+..++..........  .......++++++++++++.. ++.|..+|...
T Consensus        92 ~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~  170 (260)
T d1rwia_          92 LPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES  170 (260)
T ss_dssp             CCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred             eeeee-eeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccccccc
Confidence            33332 345689999999998777666777888776554322211  234456899999998877766 78899999775


Q ss_pred             CCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecC
Q 023822          192 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRV  271 (276)
Q Consensus       192 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  271 (276)
                      ...    .............+++.++|+++++....+.|..++.... ....+..  ..-.....++++++|.++++-..
T Consensus       171 ~~~----~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~-~~~~~~~--~~~~~P~~i~~d~~g~l~vad~~  243 (260)
T d1rwia_         171 NNQ----VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST-TSTVLPF--TGLNTPLAVAVDSDRTVYVADRG  243 (260)
T ss_dssp             CCE----EECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCS-CCEECCC--CSCCCEEEEEECTTCCEEEEEGG
T ss_pred             cee----eeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCC-eEEEEcc--CCCCCeEEEEEeCCCCEEEEECC
Confidence            331    2222233445788999999998877777888888885443 3333321  22356789999999987776444


Q ss_pred             C
Q 023822          272 S  272 (276)
Q Consensus       272 d  272 (276)
                      +
T Consensus       244 ~  244 (260)
T d1rwia_         244 N  244 (260)
T ss_dssp             G
T ss_pred             C
Confidence            3

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=1.5e-11  Score=91.77  Aligned_cols=225  Identities=8%  Similarity=0.065  Sum_probs=136.6

Q ss_pred             eeeccCCCcEEEEEEcCCCCEEEEeecCC---eEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceE
Q 023822           28 MSFRDYNGRISSMDFHKSSSYLVTASDDE---SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR  104 (276)
Q Consensus        28 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~  104 (276)
                      +.+..+...+...+|||||+.||......   .+.+.+...+.. ..+..+........|+|+++.++..........+.
T Consensus        32 ~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~  110 (269)
T d2hqsa1          32 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY  110 (269)
T ss_dssp             EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred             EEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEeeecCCcccee
Confidence            34445567788999999999998765433   466667655544 34445566788899999999998876532122233


Q ss_pred             EEEccCCceeeeecccCcceEEEEeccCCCEE-EEeeCCC--eEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee
Q 023822          105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF-ISGSLDR--TVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF  180 (276)
Q Consensus       105 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~--~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~  180 (276)
                      .+.......... ...........+++++..+ ++...++  .|...++......... .........++|+++.++...
T Consensus       111 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~  189 (269)
T d2hqsa1         111 VMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVS  189 (269)
T ss_dssp             EEETTTCCEEEC-CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEE
T ss_pred             ecccccccceee-eeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccccccccceeEEEe
Confidence            333333332222 2234444555677777644 4444455  4556666555433322 222233568999998877766


Q ss_pred             --CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecC---CcEEEEECCCCcEEEEeecCCCCCCceE
Q 023822          181 --GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME---GHIHVLDSFRGTLLSTYNVKPVSRNSTL  255 (276)
Q Consensus       181 --d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~v~  255 (276)
                        .+...+|.......    ...............|+|||+.|+..+..   ..|+++++..+... .+.   ...+.+.
T Consensus       190 ~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~-~lt---~~~g~~~  261 (269)
T d2hqsa1         190 SNGGQQHIAKQDLATG----GVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKA-RLP---ATDGQVK  261 (269)
T ss_dssp             ECSSCEEEEEEETTTC----CEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEE-ECC---CSSSEEE
T ss_pred             ecCCceeeeEeecccc----cceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EEe---CCCCcEE
Confidence              34444444433222    11222344456778999999998876543   46899998766554 444   3567888


Q ss_pred             EEEECCC
Q 023822          256 EASFSPE  262 (276)
Q Consensus       256 ~~~~s~~  262 (276)
                      ..+|||-
T Consensus       262 ~p~WSP~  268 (269)
T d2hqsa1         262 FPAWSPY  268 (269)
T ss_dssp             EEEECCC
T ss_pred             eEEeCCC
Confidence            8999983

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.54  E-value=6.5e-13  Score=104.13  Aligned_cols=194  Identities=12%  Similarity=-0.059  Sum_probs=127.7

Q ss_pred             EEEEEcCCCCEEEEee-cCCeEEEEEccCCeeeeeeeeeeeceEEEEEecc-CCeEEEeccCCCCCceEEEEccCCceee
Q 023822           38 SSMDFHKSSSYLVTAS-DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH-PTTVIYSSKNGWDESLRLLSLHDNKYLR  115 (276)
Q Consensus        38 ~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~d~~i~~~d~~~~~~~~  115 (276)
                      ..++|+|||++|+++. .++.+.+||+.+++....+..+....    +.+. ...++..+.   ||.+.++++.......
T Consensus       127 ~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~---Dg~~~~~~~~~~~~~~  199 (368)
T d1mdah_         127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH----IHPGAAATHYLGSC---PASLAASDLAAAPAAA  199 (368)
T ss_dssp             TSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC----CEEEETTEEECCCC---TTSCEEEECCSSCCCC
T ss_pred             cceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce----EccCCCceEEEEcC---CCCEEEEEecCCceee
Confidence            3689999999998776 57999999999999888876544321    1222 334444444   8888888876554322


Q ss_pred             e------ecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--------------eecCCCeeEecCCCcE
Q 023822          116 Y------FKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--------------RVQGRPAAAYDDQGLV  175 (276)
Q Consensus       116 ~------~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--------------~~~~~~~~~~~~~~~~  175 (276)
                      .      +..+...+....+.+++..+.+.  ++.+++++..........              .......+++++++..
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~  277 (368)
T d1mdah_         200 GIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDG  277 (368)
T ss_dssp             EECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTE
T ss_pred             eeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCE
Confidence            1      22344445566777777655543  455666666544332211              2233456888988866


Q ss_pred             EEEee--C--------CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCc-E-EEEeecCCcEEEEECCCCcEEEE
Q 023822          176 FAVAF--G--------GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR-L-MLLTTMEGHIHVLDSFRGTLLST  243 (276)
Q Consensus       176 l~~~~--d--------~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~-l~~~~~dg~i~i~d~~~~~~~~~  243 (276)
                      +....  +        ..|.+||..+++.    ...+. ....+..++|+|||+ + ++++..++.|++||..+++.+..
T Consensus       278 ~~v~~~~~~~~~~~~~~~v~v~D~~t~~~----~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~  352 (368)
T d1mdah_         278 IMILTVEHSRSCLAAAENTSSVTASVGQT----SGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSS  352 (368)
T ss_dssp             EEEEEEECSSCTTSCEEEEEEEESSSCCE----EECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEE
T ss_pred             EEEEecCCCceeecCCceEEEEECCCCcE----eEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEE
Confidence            65543  1        3589999988653    22222 234688899999996 3 45666789999999999999999


Q ss_pred             ee
Q 023822          244 YN  245 (276)
Q Consensus       244 ~~  245 (276)
                      +.
T Consensus       353 i~  354 (368)
T d1mdah_         353 VE  354 (368)
T ss_dssp             CC
T ss_pred             EE
Confidence            87

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.52  E-value=1.5e-10  Score=88.56  Aligned_cols=242  Identities=8%  Similarity=0.006  Sum_probs=155.9

Q ss_pred             eccCCCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCC-CCCceEEEEc
Q 023822           30 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG-WDESLRLLSL  108 (276)
Q Consensus        30 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~d~~i~~~d~  108 (276)
                      +......+..++|.++|++.++-...+.|..|+.++++....+.........+++.++++.+++...+. ..+.+...+.
T Consensus        35 ~~~~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~  114 (319)
T d2dg1a1          35 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATE  114 (319)
T ss_dssp             EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECT
T ss_pred             eccCCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcC
Confidence            333444567899999999777777889999999877665555555555678999999998776653210 0233444454


Q ss_pred             cCCceeeeecc--cCcceEEEEeccCCCEEEEeeC------CCeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEe
Q 023822          109 HDNKYLRYFKG--HHDRVVSLSLCSSKDCFISGSL------DRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVA  179 (276)
Q Consensus       109 ~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~  179 (276)
                      ...........  -......+++.++|++.++...      .+.+..++.......... .....+.++|+|+++.|..+
T Consensus       115 ~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyva  194 (319)
T d2dg1a1         115 NGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVT  194 (319)
T ss_dssp             TSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEE
T ss_pred             CCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEe
Confidence            44443333321  1234678999999987665432      234656655544333222 33344579999999765554


Q ss_pred             e--CCeEEEEecccCCCCCee----eeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCC---CC
Q 023822          180 F--GGYIRMFDARKYEKGPFD----IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP---VS  250 (276)
Q Consensus       180 ~--d~~i~~~d~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~  250 (276)
                      .  .+.|..||+.........    .............+++.++|++.++....+.|.+|| .+|+.+..+....   ++
T Consensus       195 d~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~-p~G~~l~~i~~P~~~~~~  273 (319)
T d2dg1a1         195 ETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFN-KRGYPIGQILIPGRDEGH  273 (319)
T ss_dssp             EGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEEC-TTSCEEEEEECTTGGGTC
T ss_pred             cccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEEC-CCCcEEEEEeCCCcCCCc
Confidence            4  799999998653221110    111112223356799999999888888889999999 5799988886421   23


Q ss_pred             CCceEEEEECCCCcEEEEecCC
Q 023822          251 RNSTLEASFSPEGMFVISGRVS  272 (276)
Q Consensus       251 ~~~v~~~~~s~~g~~l~~~~~d  272 (276)
                      ...+++++|.+++..+++...+
T Consensus       274 ~~~~~~~~~~~~~~~~~~t~~~  295 (319)
T d2dg1a1         274 MLRSTHPQFIPGTNQLIICSND  295 (319)
T ss_dssp             SCBCCEEEECTTSCEEEEEEEC
T ss_pred             CceeeeEEEeCCCCEEEEEcCC
Confidence            3467899999988777665443

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.50  E-value=1.8e-13  Score=110.85  Aligned_cols=148  Identities=7%  Similarity=0.067  Sum_probs=112.3

Q ss_pred             EEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeee-----eeeceEEEEEeccCCeEEEeccC------CCCCceEEE
Q 023822           38 SSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS-----KKYGVDLVCFTSHPTTVIYSSKN------GWDESLRLL  106 (276)
Q Consensus        38 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~~------~~d~~i~~~  106 (276)
                      ..+.|.++++++..  .|+.+.+||+.+++....+..     +...|.++.|+||+++|+++...      +.++.+.+|
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            35789999987764  578899999999987665543     34679999999999999987531      125788999


Q ss_pred             EccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEee--------------------cCCCe
Q 023822          107 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV--------------------QGRPA  166 (276)
Q Consensus       107 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--------------------~~~~~  166 (276)
                      |+.+++. ..+..+...+..+.|+|||+.+|... ++.+++|+..+++..+....                    .....
T Consensus        98 d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~  175 (470)
T d2bgra1          98 DLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSA  175 (470)
T ss_dssp             ETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred             ECCCCcc-cccccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccc
Confidence            9998874 55777889999999999999999864 77899999998876544311                    11345


Q ss_pred             eEecCCCcEEEEee--CCeEEEEec
Q 023822          167 AAYDDQGLVFAVAF--GGYIRMFDA  189 (276)
Q Consensus       167 ~~~~~~~~~l~~~~--d~~i~~~d~  189 (276)
                      +.|+|+|+.++...  +..+..|++
T Consensus       176 ~~wSPDGk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         176 LWWSPNGTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             EEECTTSSEEEEEEEECTTCCEEEE
T ss_pred             cEECCCCCccceeEecCCcCceEEE
Confidence            78999999888876  344555544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.48  E-value=2.8e-10  Score=85.43  Aligned_cols=228  Identities=11%  Similarity=0.184  Sum_probs=152.5

Q ss_pred             cEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeee------eeceEEEEEeccCCeEEEeccCCCCCceEEEEcc
Q 023822           36 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSK------KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH  109 (276)
Q Consensus        36 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~  109 (276)
                      ....++++++++++++-..++.|++||.+ ++.+..+...      ......+++.++....+..... .++.|..++. 
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~i~~~~~-  100 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS-PTHQIQIYNQ-  100 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG-GGCEEEEECT-
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccC-Cccccccccc-
Confidence            46789999999988887788899999964 6666655321      1124456666554444433321 1567777775 


Q ss_pred             CCceeeeec-ccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE----eecCCCeeEecCCCcEEEEee-CCe
Q 023822          110 DNKYLRYFK-GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL----RVQGRPAAAYDDQGLVFAVAF-GGY  183 (276)
Q Consensus       110 ~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~-d~~  183 (276)
                      .++....+. ........+++.++++++++....+.+.+++... +.+..+    +......+++.+++.++++.. .+.
T Consensus       101 ~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g-~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~  179 (279)
T d1q7fa_         101 YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC  179 (279)
T ss_dssp             TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred             cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC-ceeecccccccccccceeeeccceeEEeeeccccc
Confidence            455555442 3345678899999999888877788888888654 444444    222334688899998887777 799


Q ss_pred             EEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeec-CCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCC
Q 023822          184 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  262 (276)
Q Consensus       184 i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~  262 (276)
                      |++||....   ....+...+.......+++.|+|+++++-.. ++.|.+|+ .+|+.+..+... ........+++.||
T Consensus       180 V~~~d~~G~---~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~-~~~~~p~~vav~~d  254 (279)
T d1q7fa_         180 VKVFNYEGQ---YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESK-VKHAQCFDVALMDD  254 (279)
T ss_dssp             EEEEETTCC---EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEES-SCCSCEEEEEEETT
T ss_pred             eeeeecCCc---eeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCC-CCCCCEeEEEEeCC
Confidence            999997542   1112222334456788999999997766543 45799998 678888777532 23346789999999


Q ss_pred             CcEEEEecCCC
Q 023822          263 GMFVISGRVSP  273 (276)
Q Consensus       263 g~~l~~~~~dg  273 (276)
                      |.++++. .+.
T Consensus       255 G~l~V~~-~n~  264 (279)
T d1q7fa_         255 GSVVLAS-KDY  264 (279)
T ss_dssp             TEEEEEE-TTT
T ss_pred             CcEEEEe-CCC
Confidence            9866654 444

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=6.8e-10  Score=82.58  Aligned_cols=203  Identities=12%  Similarity=0.124  Sum_probs=123.9

Q ss_pred             eEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEE
Q 023822           57 SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF  136 (276)
Q Consensus        57 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  136 (276)
                      .|.|.|.. |.....+......+...+|+|||+.|+..........+.+.+...+... .+..+........|+|+++.+
T Consensus        20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i   97 (269)
T d2hqsa1          20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKL   97 (269)
T ss_dssp             EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEE
T ss_pred             EEEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCee
Confidence            57777865 4444555555667889999999999998876433455777777666544 444567788899999999987


Q ss_pred             EEeeC-CCe--EEEEeccCceeeeeEe-ecCCCeeEecCCCcEEEEee--CC--eEEEEecccCCCCCeeeeeecCCCCC
Q 023822          137 ISGSL-DRT--VLLWDQRAEKCQGLLR-VQGRPAAAYDDQGLVFAVAF--GG--YIRMFDARKYEKGPFDIFSVGGDISD  208 (276)
Q Consensus       137 ~~~~~-d~~--i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~--d~--~i~~~d~~~~~~~~~~~~~~~~~~~~  208 (276)
                      +.... ++.  +..+............ ........+++++..+....  ++  .|.+.++.....     .........
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-----~~~~~~~~~  172 (269)
T d2hqsa1          98 AFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-----QRITWEGSQ  172 (269)
T ss_dssp             EEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-----EECCCSSSE
T ss_pred             eEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccc-----eeeeccccc
Confidence            76554 333  3333333332222221 11122345666665444433  44  555556555332     222334455


Q ss_pred             ceEEEECCCCcEEEEeecCC---cEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecC
Q 023822          209 ANVVKFSNDGRLMLLTTMEG---HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRV  271 (276)
Q Consensus       209 i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  271 (276)
                      .....|+|+++.++..+.++   .+.+.+...+.. ....    .........|||||++|+..+.
T Consensus       173 ~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~----~~~~~~~p~~SPDG~~i~f~s~  233 (269)
T d2hqsa1         173 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLS----STFLDETPSLAPNGTMVIYSSS  233 (269)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECC----CSSSCEEEEECTTSSEEEEEEE
T ss_pred             ccccccccccceeEEEeecCCceeeeEeecccccc-eEee----cCccccceEECCCCCEEEEEEc
Confidence            67789999999888876544   355556554443 2222    4456677899999999876554

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.34  E-value=1.6e-08  Score=76.17  Aligned_cols=220  Identities=11%  Similarity=0.040  Sum_probs=148.1

Q ss_pred             EEEEEcCCCC-EEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeee
Q 023822           38 SSMDFHKSSS-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRY  116 (276)
Q Consensus        38 ~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~  116 (276)
                      -+..|.+... +..+--..+.|..||.++++.. .+. ....+.++++.+++..+++ +    ...+.++|..+++....
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~----~~gl~~~d~~tg~~~~l   93 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-S----DDGLFLRDTATGVLTLH   93 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-E----TTEEEEEETTTCCEEEE
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEE-E----eCccEEeecccceeeEE
Confidence            3567887544 4445446789999999887643 332 2346788999888766654 4    44588999998875433


Q ss_pred             ecc----cCcceEEEEeccCCCEEEEeeC----CCeEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee--CCeEE
Q 023822          117 FKG----HHDRVVSLSLCSSKDCFISGSL----DRTVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF--GGYIR  185 (276)
Q Consensus       117 ~~~----~~~~i~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~--d~~i~  185 (276)
                      ...    ....++.+.+.|+|++.++...    .+.-.+|.+..++..... .....+.++++++++.+..+.  .+.|.
T Consensus        94 ~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~  173 (295)
T d2ghsa1          94 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLM  173 (295)
T ss_dssp             ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEE
T ss_pred             eeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceee
Confidence            221    1235788999999996665432    234567777777655544 333456799999997665554  68999


Q ss_pred             EEecccCCC----CCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEEC-
Q 023822          186 MFDARKYEK----GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS-  260 (276)
Q Consensus       186 ~~d~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s-  260 (276)
                      .|++.....    .................+++..+|++.++.-..+.|..|| .+|+.+..+..   ....+++++|- 
T Consensus       174 ~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~l---P~~~~T~~~FGG  249 (295)
T d2ghsa1         174 RVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYEV---PGKQTTCPAFIG  249 (295)
T ss_dssp             EEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEEC---SCSBEEEEEEES
T ss_pred             EeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec-CCCcEeeEecC---CCCceEEEEEeC
Confidence            998753221    1112223334445678899999999777776788999999 57999999883   44678999995 


Q ss_pred             CCCcEEEE
Q 023822          261 PEGMFVIS  268 (276)
Q Consensus       261 ~~g~~l~~  268 (276)
                      ||.+.|+.
T Consensus       250 ~d~~~Lyv  257 (295)
T d2ghsa1         250 PDASRLLV  257 (295)
T ss_dssp             TTSCEEEE
T ss_pred             CCCCEEEE
Confidence            67665544

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.32  E-value=2e-09  Score=83.77  Aligned_cols=160  Identities=11%  Similarity=0.052  Sum_probs=103.1

Q ss_pred             ceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceee---ee--cccCcceEEEEeccCCCEEEEee-CCCeEEEEecc
Q 023822           78 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR---YF--KGHHDRVVSLSLCSSKDCFISGS-LDRTVLLWDQR  151 (276)
Q Consensus        78 ~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~---~~--~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~  151 (276)
                      .+.++.|+|++++++++..+  ...|.+|+......+.   ..  .........++|+|+++++.+.. .+++|.+|++.
T Consensus       146 h~h~v~~sPdG~~l~v~d~g--~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLT--ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETT--TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             cceEEEECCCCCEEEEeeCC--CCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEec
Confidence            47899999999999988753  5678888765432221   11  12345678999999999765544 57899999987


Q ss_pred             CceeeeeE--eec-------------------CCCeeEecCCCcEEEEee--C-----CeEEEEecccCCCCC--eeeee
Q 023822          152 AEKCQGLL--RVQ-------------------GRPAAAYDDQGLVFAVAF--G-----GYIRMFDARKYEKGP--FDIFS  201 (276)
Q Consensus       152 ~~~~~~~~--~~~-------------------~~~~~~~~~~~~~l~~~~--d-----~~i~~~d~~~~~~~~--~~~~~  201 (276)
                      ..+.....  ...                   ....+.++|+|++++++.  +     ..|..|++.......  .....
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~  303 (365)
T d1jofa_         224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP  303 (365)
T ss_dssp             TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeE
Confidence            65432211  100                   012578999999888775  2     237777765432110  01111


Q ss_pred             ecCCCCCceEEEECC-CCcEEEEee-cCCcEEEEECCCCc
Q 023822          202 VGGDISDANVVKFSN-DGRLMLLTT-MEGHIHVLDSFRGT  239 (276)
Q Consensus       202 ~~~~~~~i~~~~~~~-~~~~l~~~~-~dg~i~i~d~~~~~  239 (276)
                      ..........++++| +|++|+++. .++.|.+|++....
T Consensus       304 ~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         304 TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             EEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            122334567899998 789887765 66899999875443

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.28  E-value=6.7e-10  Score=82.39  Aligned_cols=192  Identities=8%  Similarity=0.053  Sum_probs=127.9

Q ss_pred             cEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceee
Q 023822           36 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR  115 (276)
Q Consensus        36 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~  115 (276)
                      ....++++++++++++....+.+++++-.+...+..... ......+++.++++.+++-..   +..+..++........
T Consensus        58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~-~~~p~~iavd~~g~i~v~d~~---~~~~~~~~~~~~~~~~  133 (260)
T d1rwia_          58 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDG-LNYPEGLAVDTQGAVYVADRG---NNRVVKLAAGSKTQTV  133 (260)
T ss_dssp             SCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCS-CCSEEEEEECTTCCEEEEEGG---GTEEEEECTTCSSCEE
T ss_pred             CceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeee-eeecccccccccceeEeeccc---cccccccccccceeee
Confidence            356789999998887777777777766555544433322 235688999998887666554   6667777765443222


Q ss_pred             eecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-CCeEEEEecccC
Q 023822          116 YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKY  192 (276)
Q Consensus       116 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~  192 (276)
                      ...........+++.++++++++...++.|..+|..........  .......+++++++.++++.. .+.|..++....
T Consensus       134 ~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~  213 (260)
T d1rwia_         134 LPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST  213 (260)
T ss_dssp             CCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCS
T ss_pred             eeecccCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCC
Confidence            22222334578999999998888888889999998765433322  233345789999999888877 688888876543


Q ss_pred             CCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEEC
Q 023822          193 EKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDS  235 (276)
Q Consensus       193 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  235 (276)
                      ..    .............|+++++|.++++-..+++|+.++.
T Consensus       214 ~~----~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         214 TS----TVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             CC----EECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             eE----EEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence            21    1111222345688999999987777666777776653

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.18  E-value=1.2e-08  Score=77.52  Aligned_cols=194  Identities=7%  Similarity=0.084  Sum_probs=122.1

Q ss_pred             EEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeee----eceEEEEEeccCCeEEEeccCC------------CC
Q 023822           37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK----YGVDLVCFTSHPTTVIYSSKNG------------WD  100 (276)
Q Consensus        37 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~~~------------~d  100 (276)
                      -..++|.++++.|+++...+.+...+.+............    .....+++.+++...++-....            ..
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~  152 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKF  152 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSC
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCC
Confidence            4679999999988888777788888876544322111111    1357799999998776643210            02


Q ss_pred             CceEEEEccCCceeeeecccCcceEEEEeccCCC-----EEEEeeCCCeEEEEeccCceeeee---E-eec-----CCCe
Q 023822          101 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-----CFISGSLDRTVLLWDQRAEKCQGL---L-RVQ-----GRPA  166 (276)
Q Consensus       101 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~l~~~~~d~~i~iwd~~~~~~~~~---~-~~~-----~~~~  166 (276)
                      +.|..++.. ++..... ..-...+.++|+|+++     ++++-+..+.|..||+.....+..   + ...     ....
T Consensus       153 G~v~~~~~d-g~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdG  230 (314)
T d1pjxa_         153 GSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADG  230 (314)
T ss_dssp             EEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEE
T ss_pred             ceEEEEeec-CceeEee-CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccccccccee
Confidence            344444432 3333222 2233346889998764     455556788999998764432221   1 111     1236


Q ss_pred             eEecCCCcEEEEee-CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEE-EEeecCCcEEEEECC
Q 023822          167 AAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLM-LLTTMEGHIHVLDSF  236 (276)
Q Consensus       167 ~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~  236 (276)
                      +++..+|+++++.. .+.|.+||.+.+..    ...+......+++++|.|+++.| ++.+.+|.|..+++.
T Consensus       231 iavD~~GnlyVa~~~~g~I~~~dp~~g~~----~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         231 MDFDEDNNLLVANWGSSHIEVFGPDGGQP----KMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEBTTCCEEEEEETTTEEEEECTTCBSC----SEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             eEEecCCcEEEEEcCCCEEEEEeCCCCEE----EEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            88999999887776 79999999876543    22233334567899999998754 555677888888864

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.14  E-value=4.3e-09  Score=79.72  Aligned_cols=191  Identities=10%  Similarity=-0.015  Sum_probs=122.2

Q ss_pred             ceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeee
Q 023822           78 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG  157 (276)
Q Consensus        78 ~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  157 (276)
                      .+..+++.|+|+.+++...   +++|..|+....  ...+......+.+++|.++|+++++...++.+..++........
T Consensus        29 ~~e~iAv~pdG~l~vt~~~---~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~  103 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHE---VGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV  103 (302)
T ss_dssp             CEEEEEECTTSCEEEEETT---TTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred             CcCCEEECCCCCEEEEeCC---CCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccce
Confidence            4778999999998888776   888888885533  33444567789999999999998888888888888866432221


Q ss_pred             -eE----eecCCCeeEecCCCcEEEEee-CCeEEEEecccCCCCCee------eeeecCCCCCceEEEECCCCcEEEEee
Q 023822          158 -LL----RVQGRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFD------IFSVGGDISDANVVKFSNDGRLMLLTT  225 (276)
Q Consensus       158 -~~----~~~~~~~~~~~~~~~~l~~~~-d~~i~~~d~~~~~~~~~~------~~~~~~~~~~i~~~~~~~~~~~l~~~~  225 (276)
                       .+    .......+.+.++++++++.. ++.+..+|..........      .............+.++. +.++++.+
T Consensus       104 ~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~  182 (302)
T d2p4oa1         104 ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNT  182 (302)
T ss_dssp             EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEET
T ss_pred             eeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecC
Confidence             11    122345788999999888776 788888887754311000      000011112345566654 34455566


Q ss_pred             cCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecCCCCC
Q 023822          226 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRVSPFS  275 (276)
Q Consensus       226 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  275 (276)
                      ..+.|..++............. ........++++++|++.++...++.|
T Consensus       183 ~~~~i~~~~~~~~~~~~~~~~~-~~~~~pdgia~d~dG~l~va~~~~~~V  231 (302)
T d2p4oa1         183 EKMLLLRIPVDSTDKPGEPEIF-VEQTNIDDFAFDVEGNLYGATHIYNSV  231 (302)
T ss_dssp             TTTEEEEEEBCTTSCBCCCEEE-EESCCCSSEEEBTTCCEEEECBTTCCE
T ss_pred             CCCeEEeccccccccccccccc-cCCCCCcceEECCCCCEEEEEcCCCcE
Confidence            7888988887654433221110 122345678999999877776666543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=4.3e-09  Score=84.51  Aligned_cols=223  Identities=11%  Similarity=0.119  Sum_probs=139.0

Q ss_pred             EEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeee---eeceEEEEEeccCCeEEEeccC------CCCCceEEEEccC
Q 023822           40 MDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSK---KYGVDLVCFTSHPTTVIYSSKN------GWDESLRLLSLHD  110 (276)
Q Consensus        40 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~~------~~d~~i~~~d~~~  110 (276)
                      ..|.+++.++.. ..+|.|.+||+.+++....+...   ...+....|+||+++++.....      +..+.+.++|+.+
T Consensus        22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence            468888876654 56789999999988754434322   2356778899999998886521      2257899999998


Q ss_pred             Cceeeee--cccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecC--------------------CCeeE
Q 023822          111 NKYLRYF--KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--------------------RPAAA  168 (276)
Q Consensus       111 ~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--------------------~~~~~  168 (276)
                      ++.....  ......+....|+|||+.+|... ++.|.+.+...+...+......                    ...+.
T Consensus       101 ~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~  179 (465)
T d1xfda1         101 GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHW  179 (465)
T ss_dssp             CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEE
T ss_pred             CceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEE
Confidence            8654322  22344566788999999988776 6788998887766554441110                    12567


Q ss_pred             ecCCCcEEEEee--CCeEEEEecccCC--C-C--------------C---eeeeeec---------------CCCCCceE
Q 023822          169 YDDQGLVFAVAF--GGYIRMFDARKYE--K-G--------------P---FDIFSVG---------------GDISDANV  211 (276)
Q Consensus       169 ~~~~~~~l~~~~--d~~i~~~d~~~~~--~-~--------------~---~~~~~~~---------------~~~~~i~~  211 (276)
                      |+|||+.|+...  +..+..+.+....  . .              +   +.++.+.               ....-+..
T Consensus       180 WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~  259 (465)
T d1xfda1         180 WSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITM  259 (465)
T ss_dssp             ECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEE
T ss_pred             ECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeee
Confidence            999999888765  4444444332110  0 0              0   0001110               01112567


Q ss_pred             EEECCCCcEEEEeec-C---CcEEEEECCCCcEEEEeecCCCCCCce----EEEEECCCCcEE
Q 023822          212 VKFSNDGRLMLLTTM-E---GHIHVLDSFRGTLLSTYNVKPVSRNST----LEASFSPEGMFV  266 (276)
Q Consensus       212 ~~~~~~~~~l~~~~~-d---g~i~i~d~~~~~~~~~~~~~~~~~~~v----~~~~~s~~g~~l  266 (276)
                      +.|+|++++++.... +   ..|.++|..+++....+...  ..+.|    ....|+|||+.+
T Consensus       260 ~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~--~~~wv~~~~~~p~~~~dg~~~  320 (465)
T d1xfda1         260 VKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE--SEAWLHRQNEEPVFSKDGRKF  320 (465)
T ss_dssp             EEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE--CSSCCCCCCCCCEECTTSCSE
T ss_pred             eEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEc--CCceEeccCCceeEccCCCee
Confidence            899999987665432 2   25888999999877665421  22222    345789999743

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.1e-07  Score=76.18  Aligned_cols=236  Identities=13%  Similarity=0.144  Sum_probs=133.4

Q ss_pred             CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeee-e-----------------ceEEEEEeccCCeEEEec
Q 023822           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK-Y-----------------GVDLVCFTSHPTTVIYSS   95 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~-----------------~v~~~~~~~~~~~l~~~~   95 (276)
                      ...+....|||||+.||-.. ++.|.+.+...+..++...... .                 .-..+.|+||+++|+...
T Consensus       113 ~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~  191 (465)
T d1xfda1         113 NAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA  191 (465)
T ss_dssp             SCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             ccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEE
Confidence            44566789999999998875 5789988887766554432111 1                 114678999999999875


Q ss_pred             cCCCCC---------------------------------ceEEEEccCCceeeee------cccCcceEEEEeccCCCEE
Q 023822           96 KNGWDE---------------------------------SLRLLSLHDNKYLRYF------KGHHDRVVSLSLCSSKDCF  136 (276)
Q Consensus        96 ~~~~d~---------------------------------~i~~~d~~~~~~~~~~------~~~~~~i~~~~~~~~~~~l  136 (276)
                      .+  +.                                 .+.++|+.++......      ......+..+.|+|+++.+
T Consensus       192 ~D--~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~  269 (465)
T d1xfda1         192 IN--DSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVA  269 (465)
T ss_dssp             EE--CTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEE
T ss_pred             ec--ccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEE
Confidence            32  22                                 3455555444322111      1122346788999998865


Q ss_pred             EEeeC-C---CeEEEEeccCceeeeeEeecC-------CCeeEecCCCcEE---EEee-C--CeEEEEecccCCC--CCe
Q 023822          137 ISGSL-D---RTVLLWDQRAEKCQGLLRVQG-------RPAAAYDDQGLVF---AVAF-G--GYIRMFDARKYEK--GPF  197 (276)
Q Consensus       137 ~~~~~-d---~~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~l---~~~~-d--~~i~~~d~~~~~~--~~~  197 (276)
                      +.... +   ..+.++|..++++...+....       .....|+++|+.+   .... +  +.++.+++.....  ...
T Consensus       270 ~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~  349 (465)
T d1xfda1         270 VTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSND  349 (465)
T ss_dssp             EEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSC
T ss_pred             EEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCc
Confidence            54332 2   258889999988766553221       2356788888632   2222 3  3555554432110  001


Q ss_pred             eeeeecCCCCCceEE-EECCCCcEEEE-eecC--Cc--EEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecC
Q 023822          198 DIFSVGGDISDANVV-KFSNDGRLMLL-TTME--GH--IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRV  271 (276)
Q Consensus       198 ~~~~~~~~~~~i~~~-~~~~~~~~l~~-~~~d--g~--i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  271 (276)
                      ....+....-.|..+ +|+++++.++. +..+  +.  ++-.++..+.....+...........++.|||+|++++....
T Consensus       350 ~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s  429 (465)
T d1xfda1         350 NIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE  429 (465)
T ss_dssp             CCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred             eeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEee
Confidence            122223334455554 68888776654 4333  22  444444433333333221124456779999999999875544


Q ss_pred             C
Q 023822          272 S  272 (276)
Q Consensus       272 d  272 (276)
                      .
T Consensus       430 ~  430 (465)
T d1xfda1         430 G  430 (465)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.00  E-value=1.3e-07  Score=70.47  Aligned_cols=192  Identities=10%  Similarity=0.149  Sum_probs=126.3

Q ss_pred             EEEEEcCC-CCEEEE-eecCCeEEEEEccCCeeeeeeee-eeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCcee
Q 023822           38 SSMDFHKS-SSYLVT-ASDDESIRLYDVTAATCLKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL  114 (276)
Q Consensus        38 ~~~~~~~~-~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~  114 (276)
                      ..+++.++ +..+++ .+.++.|..++. .++....+.. .......+++.+++..+++...   .+.+.+++.. ++.+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~---~~~~~~~~~~-g~~~  147 (279)
T d1q7fa_          73 NRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECK---VMRVIIFDQN-GNVL  147 (279)
T ss_dssp             EEEEEETTTTEEEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETT---TTEEEEECTT-SCEE
T ss_pred             ccccccccccccceeccCCccccccccc-cccceeecCCCcccccceeccccCCcEEEEeec---cceeeEeccC-Ccee
Confidence            34454443 333333 334557777775 4555555432 2345678889888887777665   6778888754 4555


Q ss_pred             eee--cccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe----ecCCCeeEecCCCcEEEEee--CCeEEE
Q 023822          115 RYF--KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR----VQGRPAAAYDDQGLVFAVAF--GGYIRM  186 (276)
Q Consensus       115 ~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~--d~~i~~  186 (276)
                      ..+  ..+......+++.++++.+++....+.|++||... +.+..+.    ......++++++++++++..  ++.|.+
T Consensus       148 ~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G-~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~  226 (279)
T d1q7fa_         148 HKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTI  226 (279)
T ss_dssp             EEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEE
T ss_pred             ecccccccccccceeeeccceeEEeeeccccceeeeecCC-ceeeeecccccccCCcccccccCCeEEEEECCCCcEEEE
Confidence            544  34556778899999999888888899999999754 4444442    22245789999999887764  457999


Q ss_pred             EecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCc
Q 023822          187 FDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT  239 (276)
Q Consensus       187 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  239 (276)
                      |+... +  ....+...........+++.|+|.++ +++.+..|++|......
T Consensus       227 f~~~G-~--~~~~~~~~~~~~~p~~vav~~dG~l~-V~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         227 FTQDG-Q--LISALESKVKHAQCFDVALMDDGSVV-LASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             ECTTS-C--EEEEEEESSCCSCEEEEEEETTTEEE-EEETTTEEEEEECSCCC
T ss_pred             ECCCC-C--EEEEEeCCCCCCCEeEEEEeCCCcEE-EEeCCCeEEEEEeeeec
Confidence            98542 2  11122223333467889999999755 45678899999987653

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.97  E-value=6.6e-07  Score=67.91  Aligned_cols=189  Identities=10%  Similarity=0.132  Sum_probs=116.1

Q ss_pred             ceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeC----CCeEEEEeccCc
Q 023822           78 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL----DRTVLLWDQRAE  153 (276)
Q Consensus        78 ~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~  153 (276)
                      ....++|.++++..++-..   .+.|..|+..+++....+.........++++++|+++++...    .+.+...+....
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~---~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVF---EGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             CEEEEEECTTSCEEEEETT---TCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             CcEeCEECCCCCEEEEECC---CCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence            3467899999885555544   888999998877666655555667889999999987776543    234555565555


Q ss_pred             eeeeeEe----ecCCCeeEecCCCcEEEEeeC-------CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEE
Q 023822          154 KCQGLLR----VQGRPAAAYDDQGLVFAVAFG-------GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLML  222 (276)
Q Consensus       154 ~~~~~~~----~~~~~~~~~~~~~~~l~~~~d-------~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  222 (276)
                      .......    ......+++.++|++.++...       +.+..++.....     ...........+.++|+|+++.|+
T Consensus       118 ~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-----~~~~~~~~~~pnGia~s~dg~~ly  192 (319)
T d2dg1a1         118 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-----VTPIIQNISVANGIALSTDEKVLW  192 (319)
T ss_dssp             SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-----EEEEEEEESSEEEEEECTTSSEEE
T ss_pred             eeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-----eEEEeeccceeeeeeeccccceEE
Confidence            4433331    122346889999998777542       335555543321     111111223457899999998665


Q ss_pred             Ee-ecCCcEEEEECCCC-cEEEEe----ecCCCCCCceEEEEECCCCcEEEEecCCCC
Q 023822          223 LT-TMEGHIHVLDSFRG-TLLSTY----NVKPVSRNSTLEASFSPEGMFVISGRVSPF  274 (276)
Q Consensus       223 ~~-~~dg~i~i~d~~~~-~~~~~~----~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~  274 (276)
                      .+ +..+.|..|++... ......    ............+++.++|++.++...++.
T Consensus       193 vad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~  250 (319)
T d2dg1a1         193 VTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGR  250 (319)
T ss_dssp             EEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTE
T ss_pred             EecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCE
Confidence            54 56789999987532 221111    100012234567888888887666555443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.86  E-value=9.4e-07  Score=65.35  Aligned_cols=206  Identities=9%  Similarity=0.090  Sum_probs=110.5

Q ss_pred             eeeccCCCcEEEEEEcCCCCEEEEeec-C-----CeEEEEEccCCeeeeeeee------eeeceEEEEEeccCCeEEEec
Q 023822           28 MSFRDYNGRISSMDFHKSSSYLVTASD-D-----ESIRLYDVTAATCLKTINS------KKYGVDLVCFTSHPTTVIYSS   95 (276)
Q Consensus        28 ~~~~~h~~~v~~~~~~~~~~~l~~~~~-d-----~~i~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~   95 (276)
                      +.|..+.+.+...+|||||+.||.... +     ..|.+++..+++.......      .........|+|+++.++...
T Consensus        34 ~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          34 RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEE
Confidence            456667788999999999999986542 2     2477788877765543221      123456789999999998865


Q ss_pred             cCCC---CCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCC-----------eEEEEeccCceeeeeE-e
Q 023822           96 KNGW---DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR-----------TVLLWDQRAEKCQGLL-R  160 (276)
Q Consensus        96 ~~~~---d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----------~i~iwd~~~~~~~~~~-~  160 (276)
                      ....   ...+...+...+.....   +........+.+.+..++....+.           ................ .
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (281)
T d1k32a2         114 AMQPFSSMTCLYRVENDGINFVPL---NLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDM  190 (281)
T ss_dssp             TTSSSTTCCEEEEEEGGGTEEEEC---CSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECC
T ss_pred             ccCCCccceeeeeecCCCceeEEe---cCCccceeeecCCCeEEEeeccccceeeeeccCCcceeeeeccccceeeccCC
Confidence            4211   22344555554443222   222222333333333333332211           1122222222222222 1


Q ss_pred             ecCCCeeEecCCCcEEEEee--CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCC
Q 023822          161 VQGRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG  238 (276)
Q Consensus       161 ~~~~~~~~~~~~~~~l~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  238 (276)
                      ........+.++..+.....  ...|.++|+.+.+..     .+... .......|+|||+.|+.. .++.|+++|+.++
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-----~lt~~-~~~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g  263 (281)
T d1k32a2         191 STHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLR-----KHTSF-TDYYPRHLNTDGRRILFS-KGGSIYIFNPDTE  263 (281)
T ss_dssp             SSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCE-----ECCCC-CSSCEEEEEESSSCEEEE-ETTEEEEECTTTC
T ss_pred             ccccceeeeeccccceecccccccceEEEeCCCCceE-----EeecC-CCcccccCcCCCCEEEEE-eCCEEEEEECCCC
Confidence            12222344555543333333  357888888765431     11111 122335689999988764 4688999999888


Q ss_pred             cEEEE
Q 023822          239 TLLST  243 (276)
Q Consensus       239 ~~~~~  243 (276)
                      +....
T Consensus       264 ~~~~i  268 (281)
T d1k32a2         264 KIEKI  268 (281)
T ss_dssp             CEEEC
T ss_pred             CEEEe
Confidence            76543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.82  E-value=6.8e-06  Score=60.28  Aligned_cols=238  Identities=7%  Similarity=-0.002  Sum_probs=143.2

Q ss_pred             eeehHHHhhccccceeeccCCCcEEEEEEcCCCCEEEEe-ecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEE
Q 023822           14 LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTA-SDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVI   92 (276)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   92 (276)
                      +.++............+..+...+..++|.+..+.|.-+ ..++.|+..++........+...-..+..+++..-+..|.
T Consensus        15 ~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY   94 (263)
T d1npea_          15 LPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIF   94 (263)
T ss_dssp             EEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEE
T ss_pred             EECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEE
Confidence            444433333333334444555668889999877766654 4567898888876554444433335678899988788887


Q ss_pred             EeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeC---CCeEEEEeccCceeeeeE--eecCCCee
Q 023822           93 YSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL---DRTVLLWDQRAEKCQGLL--RVQGRPAA  167 (276)
Q Consensus        93 ~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~--~~~~~~~~  167 (276)
                      .+...  .+.|.+.++........+......+..++++|...++.....   ...|..-++.........  .......+
T Consensus        95 ~~d~~--~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~gl  172 (263)
T d1npea_          95 WTDSQ--LDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGL  172 (263)
T ss_dssp             EEETT--TTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEE
T ss_pred             EeccC--CCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceE
Confidence            77542  779999998765543333333456789999997776654432   233555556544333222  22234578


Q ss_pred             EecCCCcEEEEee--CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEee
Q 023822          168 AYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  245 (276)
Q Consensus       168 ~~~~~~~~l~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  245 (276)
                      ++++.+..|....  .+.|...|+.....    .....+.. ....+++. ++.+..+-...+.|...|..+++.+..+.
T Consensus       173 aiD~~~~~lYw~d~~~~~I~~~~~~g~~~----~~v~~~~~-~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~  246 (263)
T d1npea_         173 TFDAFSSQLCWVDAGTHRAECLNPAQPGR----RKVLEGLQ-YPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (263)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTEEEE----EEEEECCC-SEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             EEeecCcEEEEEeCCCCEEEEEECCCCCe----EEEECCCC-CcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEEC
Confidence            8887766554443  68899999876432    11112222 34567775 34434444466889999999998887664


Q ss_pred             cCCCCCCceEEEEECC
Q 023822          246 VKPVSRNSTLEASFSP  261 (276)
Q Consensus       246 ~~~~~~~~v~~~~~s~  261 (276)
                      ..  .......++..+
T Consensus       247 ~~--~~~~~~gi~v~~  260 (263)
T d1npea_         247 PH--KQTRLYGITIAL  260 (263)
T ss_dssp             CS--SCCCCCCEEEEC
T ss_pred             CC--CCCCcceEEEeC
Confidence            21  223344555544

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.74  E-value=2.9e-06  Score=62.59  Aligned_cols=215  Identities=8%  Similarity=-0.023  Sum_probs=116.1

Q ss_pred             EEcCC--CCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccC-CCC--CceEEEEccCCceee
Q 023822           41 DFHKS--SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN-GWD--ESLRLLSLHDNKYLR  115 (276)
Q Consensus        41 ~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~~d--~~i~~~d~~~~~~~~  115 (276)
                      ..+|+  |+.+|-.+ ++.|.+.|+.+++.. .+..+...+...+|+|||+.|+..... +.+  ..|.+++..+++..+
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            35788  99888664 467999999877754 555566678889999999999876531 112  347777877776543


Q ss_pred             eec------ccCcceEEEEeccCCCEEEEeeCC------CeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEeeC-C
Q 023822          116 YFK------GHHDRVVSLSLCSSKDCFISGSLD------RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFG-G  182 (276)
Q Consensus       116 ~~~------~~~~~i~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d-~  182 (276)
                      ...      ..........|+|+++.++.....      ..+...+......... .........+.+.+..+..... .
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  161 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL-NLGPATHILFADGRRVIGRNTFEL  161 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC-CSCSCSEEEEETTEEEEEESCSCC
T ss_pred             eeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEe-cCCccceeeecCCCeEEEeecccc
Confidence            221      112345678899999988765432      2345555555443222 2222223333333344443321 1


Q ss_pred             -----------eEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeec--CCcEEEEECCCCcEEEEeecCCC
Q 023822          183 -----------YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM--EGHIHVLDSFRGTLLSTYNVKPV  249 (276)
Q Consensus       183 -----------~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~  249 (276)
                                 ...........     ...............++++.. +.....  ...|.++|+.+++... +..  .
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~d~~g~~~~~-lt~--~  232 (281)
T d1k32a2         162 PHWKGYRGGTRGKIWIEVNSGA-----FKKIVDMSTHVSSPVIVGHRI-YFITDIDGFGQIYSTDLDGKDLRK-HTS--F  232 (281)
T ss_dssp             TTSTTCCSTTCCEEEEEEETTE-----EEEEECCSSCCEEEEEETTEE-EEEECTTSSCEEEEEETTSCSCEE-CCC--C
T ss_pred             ceeeeeccCCcceeeeeccccc-----eeeccCCccccceeeeecccc-ceecccccccceEEEeCCCCceEE-eec--C
Confidence                       01111111100     111112223444555665532 232323  3458888887665543 331  1


Q ss_pred             CCCceEEEEECCCCcEEEEe
Q 023822          250 SRNSTLEASFSPEGMFVISG  269 (276)
Q Consensus       250 ~~~~v~~~~~s~~g~~l~~~  269 (276)
                      ....  ...|+|||+.|+..
T Consensus       233 ~~~~--~~~~SpDG~~I~f~  250 (281)
T d1k32a2         233 TDYY--PRHLNTDGRRILFS  250 (281)
T ss_dssp             CSSC--EEEEEESSSCEEEE
T ss_pred             CCcc--cccCcCCCCEEEEE
Confidence            2223  34689999887764

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.66  E-value=3.4e-05  Score=59.32  Aligned_cols=231  Identities=8%  Similarity=0.104  Sum_probs=140.7

Q ss_pred             EEEEcC---CCCEEEEee-cCCeEEEEEccCCeeeeeeeee-eeceEEEEEec--cCCeEEEeccCC-------------
Q 023822           39 SMDFHK---SSSYLVTAS-DDESIRLYDVTAATCLKTINSK-KYGVDLVCFTS--HPTTVIYSSKNG-------------   98 (276)
Q Consensus        39 ~~~~~~---~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~--~~~~l~~~~~~~-------------   98 (276)
                      .+++..   ||++|+... .+..|.+-|+++.++.+.+... ...+..++..+  +..+++..+...             
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            455543   788887765 6789999999999887755432 23456666654  555666655411             


Q ss_pred             --CCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCC---------------eEEEEe------------
Q 023822           99 --WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR---------------TVLLWD------------  149 (276)
Q Consensus        99 --~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---------------~i~iwd------------  149 (276)
                        +.+.+...|..+.+....+.- ......+.++++|+++++.+.+.               .+.+++            
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk  247 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD  247 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred             hhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence              123467788888887766653 34567789999999888876431               133333            


Q ss_pred             -----------ccCc---eeeeeE-eecCCCeeEecCCCcEEEEee--CCeEEEEecccCCC------CC-eeeeeecCC
Q 023822          150 -----------QRAE---KCQGLL-RVQGRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEK------GP-FDIFSVGGD  205 (276)
Q Consensus       150 -----------~~~~---~~~~~~-~~~~~~~~~~~~~~~~l~~~~--d~~i~~~d~~~~~~------~~-~~~~~~~~~  205 (276)
                                 .+..   .....+ -......+..+|||++++++.  +.++.++|++....      .+ -.+......
T Consensus       248 ~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~el  327 (459)
T d1fwxa2         248 YQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL  327 (459)
T ss_dssp             SEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBC
T ss_pred             cEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeeccc
Confidence                       3321   111122 233455789999999999888  89999999975321      00 011111122


Q ss_pred             CCCceEEEECCCCcEEEEeecCCcEEEEECCCC----------cEEEEeecC--CCCCCceEEEEECCCCcEEEEec
Q 023822          206 ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG----------TLLSTYNVK--PVSRNSTLEASFSPEGMFVISGR  270 (276)
Q Consensus       206 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----------~~~~~~~~~--~~~~~~v~~~~~s~~g~~l~~~~  270 (276)
                      .-....-+|+..|....+---|..|.-|++...          ..+..+..+  ++|......-...|||++|++..
T Consensus       328 glgPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~n  404 (459)
T d1fwxa2         328 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS  404 (459)
T ss_dssp             CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred             CcCccccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEec
Confidence            334567789998875555668999999997432          344444411  01111111112478999998863

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.44  E-value=8.2e-05  Score=55.36  Aligned_cols=177  Identities=15%  Similarity=0.073  Sum_probs=109.8

Q ss_pred             EEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEe
Q 023822           81 LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR  160 (276)
Q Consensus        81 ~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  160 (276)
                      ...|.+....|......  .+.|..||..+++.. .+. ....+.++++.++++++++ +.+ .+.++|..+++......
T Consensus        22 gp~wd~~~~~l~wvDi~--~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~   95 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNIL--ERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAE   95 (295)
T ss_dssp             EEEEETTTTEEEEEEGG--GTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEEC
T ss_pred             CCeEECCCCEEEEEECC--CCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEee
Confidence            34577766666655431  788999998887643 232 3556789999999876665 444 58999999887554331


Q ss_pred             e------cCCCeeEecCCCcEEEEee-----CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEe-ecCC
Q 023822          161 V------QGRPAAAYDDQGLVFAVAF-----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLT-TMEG  228 (276)
Q Consensus       161 ~------~~~~~~~~~~~~~~l~~~~-----d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg  228 (276)
                      .      ...+.+.+.|+|++.++..     .+.-.+|.+..++     ...........+.++|+++++.++.+ +..+
T Consensus        96 ~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~-----~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~  170 (295)
T d2ghsa1          96 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK-----VTKLFADISIPNSICFSPDGTTGYFVDTKVN  170 (295)
T ss_dssp             SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE-----EEEEEEEESSEEEEEECTTSCEEEEEETTTC
T ss_pred             eecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCc-----EEEEeeccCCcceeeecCCCceEEEeecccc
Confidence            1      1234678899999887765     2345566665433     11222223356789999999866554 5678


Q ss_pred             cEEEEECCCCc--E---EEEeecCCCCCCceEEEEECCCCcEEEE
Q 023822          229 HIHVLDSFRGT--L---LSTYNVKPVSRNSTLEASFSPEGMFVIS  268 (276)
Q Consensus       229 ~i~i~d~~~~~--~---~~~~~~~~~~~~~v~~~~~s~~g~~l~~  268 (276)
                      .|..|++....  .   ...+....+..+....+++..+|++.++
T Consensus       171 ~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva  215 (295)
T d2ghsa1         171 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNA  215 (295)
T ss_dssp             EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEE
T ss_pred             eeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEee
Confidence            89888864211  1   1111111134456777888888875554

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.43  E-value=0.00011  Score=53.54  Aligned_cols=213  Identities=15%  Similarity=0.231  Sum_probs=135.6

Q ss_pred             EEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCC-ceeeee
Q 023822           39 SMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN-KYLRYF  117 (276)
Q Consensus        39 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~-~~~~~~  117 (276)
                      +.-.+|..+.||.-+ ..++.+||+++.+.+..+...+ +|.--.|-. .+.|+..+    +..|+-|+++.. .+.+.+
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis-~~~L~lVT----~taVYHW~~~g~s~P~k~f  139 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWIS-LNTVALVT----DNAVYHWSMEGESQPVKMF  139 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEESS-SSEEEEEC----SSEEEEEESSSSCCCEEEE
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC-CcEEEEecC-CCEEEEEc----CCceEEEcccCCCCchhhh
Confidence            455678888888765 4689999999998888776655 677777864 44555555    788999999543 456666


Q ss_pred             cccC----cceEEEEeccCCCEEEEee---C----CCeEEEEeccCceeeeeEeecCCCeeEecCC-----CcEEEEee-
Q 023822          118 KGHH----DRVVSLSLCSSKDCFISGS---L----DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQ-----GLVFAVAF-  180 (276)
Q Consensus       118 ~~~~----~~i~~~~~~~~~~~l~~~~---~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~-  180 (276)
                      ..|.    ..|-.-..+++.++++..+   .    .|.+.+|..+..... .+..+......+--+     ..+++.+. 
T Consensus       140 dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ-~ieGhaa~F~~~~~~g~~~~~~lf~fa~r  218 (327)
T d1utca2         140 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-PIEGHAASFAQFKMEGNAEESTLFCFAVR  218 (327)
T ss_dssp             ECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEE-EECCSEEEEEEECCTTCSSCEEEEEEEEE
T ss_pred             hhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCc-cccceeeeeEEEEcCCCCCCceEEEEEEC
Confidence            5554    3677777888888776543   2    356788887765432 222222221222111     13444444 


Q ss_pred             ---CCeEEEEecccCCC--CCee--eeee----cCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCC
Q 023822          181 ---GGYIRMFDARKYEK--GPFD--IFSV----GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV  249 (276)
Q Consensus       181 ---d~~i~~~d~~~~~~--~~~~--~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  249 (276)
                         .+.+.+.++.....  .++.  ...+    .....-.-++..++.-..++.-+.-|.|++||+.++.++..-+   -
T Consensus       219 ~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nR---I  295 (327)
T d1utca2         219 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR---I  295 (327)
T ss_dssp             ETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE---C
T ss_pred             CCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEee---c
Confidence               37899999876432  2211  1111    1112334567888887888889999999999999999988776   3


Q ss_pred             CCCceEEEEECCC
Q 023822          250 SRNSTLEASFSPE  262 (276)
Q Consensus       250 ~~~~v~~~~~s~~  262 (276)
                      ....|...+-+.+
T Consensus       296 s~~~iF~~a~~~~  308 (327)
T d1utca2         296 SGETIFVTAPHEA  308 (327)
T ss_dssp             CSSCEEEEEEETT
T ss_pred             CCCceEEeccCCC
Confidence            4455554443333

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.11  E-value=0.00095  Score=51.25  Aligned_cols=216  Identities=13%  Similarity=0.084  Sum_probs=130.2

Q ss_pred             EEEeecCCeEEEEEccCCeeeeeeeeee---------------------------------------eceE--EEEEe--
Q 023822           49 LVTASDDESIRLYDVTAATCLKTINSKK---------------------------------------YGVD--LVCFT--   85 (276)
Q Consensus        49 l~~~~~d~~i~iwd~~~~~~~~~~~~~~---------------------------------------~~v~--~~~~~--   85 (276)
                      |.+|+..|.|+|+-+.+++.+..+....                                       +...  .+++.  
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            5678899999999998887776653110                                       0111  34443  


Q ss_pred             -ccCCeEEEeccCCCCCceEEEEccCCceeeeecc-cCcceEEEEeccC--CCEEEEeeCC------------------C
Q 023822           86 -SHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKG-HHDRVVSLSLCSS--KDCFISGSLD------------------R  143 (276)
Q Consensus        86 -~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~--~~~l~~~~~d------------------~  143 (276)
                       +||+++++....  +..|.+.|+.+.++.+.+.. ....+..+...++  -.+++..+++                  +
T Consensus        96 tyDGrylFVNDka--n~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~  173 (459)
T d1fwxa2          96 KYDGRFLFMNDKA--NTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN  173 (459)
T ss_dssp             EEEEEEEEEEETT--TTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEE
T ss_pred             ccceeEEEEEcCC--CceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcce
Confidence             378888888764  89999999999987664432 2334565665544  4477766653                  2


Q ss_pred             eEEEEeccCceeeeeEeec-CCCeeEecCCCcEEEEee-C--C-------------eEEEEe------------------
Q 023822          144 TVLLWDQRAEKCQGLLRVQ-GRPAAAYDDQGLVFAVAF-G--G-------------YIRMFD------------------  188 (276)
Q Consensus       144 ~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~-d--~-------------~i~~~d------------------  188 (276)
                      .+...|..+.+....+... ....+.++++|+++.+.+ +  .             .+.+++                  
T Consensus       174 ~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eing  253 (459)
T d1fwxa2         174 VFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG  253 (459)
T ss_dssp             EEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred             EEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCC
Confidence            3667899888877776433 356899999999888765 2  1             233333                  


Q ss_pred             -----cccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEee-cCCcEEEEECCCCcE--------EEEeecCCCCCCce
Q 023822          189 -----ARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGTL--------LSTYNVKPVSRNST  254 (276)
Q Consensus       189 -----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~--------~~~~~~~~~~~~~v  254 (276)
                           .+....... ...+. -......+..+|||+++++++ .+.++.++|++.-..        ...+.......-..
T Consensus       254 V~VVD~~~~~~~~v-~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgP  331 (459)
T d1fwxa2         254 VKVVDGRKEASSLF-TRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGP  331 (459)
T ss_dssp             EEEEECSGG--CSS-EEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCE
T ss_pred             ceeecccccCCcce-eEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCc
Confidence                 322111111 11111 112356789999999987765 578999999863111        11111111133344


Q ss_pred             EEEEECCCCcEEEE
Q 023822          255 LEASFSPEGMFVIS  268 (276)
Q Consensus       255 ~~~~~s~~g~~l~~  268 (276)
                      ..-+|+..|.-..+
T Consensus       332 Lht~fd~~g~ayts  345 (459)
T d1fwxa2         332 LHTAFDGRGNAYTS  345 (459)
T ss_dssp             EEEEECTTSEEEEE
T ss_pred             cccccCCCceEEEE
Confidence            55688888754333

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=0.00072  Score=49.25  Aligned_cols=208  Identities=8%  Similarity=0.008  Sum_probs=128.1

Q ss_pred             CCCcEEEEEEcCCCCEEEEee-cCCeEEEEEccCCe----eeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEE
Q 023822           33 YNGRISSMDFHKSSSYLVTAS-DDESIRLYDVTAAT----CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS  107 (276)
Q Consensus        33 h~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d  107 (276)
                      ....+..++|.+..+.|.-.. .++.|+-.++....    ....+......+..+++.+.+..|..+...  .+.|.+.+
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~--~~~I~v~~  105 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV--LGTVSVAD  105 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETT--TTEEEEEE
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecC--CCEEEeEe
Confidence            445677899998777666543 55667766664321    111222223456789998888888887652  78899999


Q ss_pred             ccCCceeeeecccCcceEEEEeccCCCEEEEee--CCCeEEEEeccCceeeeeEe--ecCCCeeEecCCCcEEEEee--C
Q 023822          108 LHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS--LDRTVLLWDQRAEKCQGLLR--VQGRPAAAYDDQGLVFAVAF--G  181 (276)
Q Consensus       108 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~--d  181 (276)
                      +........+.........++++|...++....  ..+.|...++..........  ......+++++.+..|..+.  .
T Consensus       106 ~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~  185 (266)
T d1ijqa1         106 TKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL  185 (266)
T ss_dssp             TTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             cCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCc
Confidence            887665555555556678999998665554433  34567777776554433332  23345788888765554444  6


Q ss_pred             CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEee
Q 023822          182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  245 (276)
Q Consensus       182 ~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  245 (276)
                      +.|...++.....  ..+............+++. ++.++.+-..++.|...+..+++....+.
T Consensus       186 ~~I~~~~~dG~~~--~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~~~~~~~  246 (266)
T d1ijqa1         186 HSISSIDVNGGNR--KTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  246 (266)
T ss_dssp             TEEEEEETTSCSC--EEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             CEEEEEECCCCCE--EEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCCcceEEEE
Confidence            8999999865432  2222222222345567766 33444444467888888888887766665

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.03  E-value=0.00099  Score=48.40  Aligned_cols=210  Identities=9%  Similarity=-0.008  Sum_probs=126.0

Q ss_pred             CEEEEeecCCeEEEEEccCCee-----eeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccC
Q 023822           47 SYLVTASDDESIRLYDVTAATC-----LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHH  121 (276)
Q Consensus        47 ~~l~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~  121 (276)
                      .+|+-+.. +.|+-.+++....     ...+..+...+..++|.+..+.+..+...  ++.|+..++........+....
T Consensus         2 ~fLl~s~~-~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~--~~~I~~~~l~g~~~~~v~~~~~   78 (263)
T d1npea_           2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDIS--EPSIGRASLHGGEPTTIIRQDL   78 (263)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETT--TTEEEEEESSSCCCEEEECTTC
T ss_pred             CEEEEeCC-CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECC--CCeEEEEEcccCCcEEEEEecc
Confidence            34444433 4677777654321     12233444567889999988888887653  7889888887665544444334


Q ss_pred             cceEEEEeccCCCEEE-EeeCCCeEEEEeccCceeeeeE--eecCCCeeEecCCCcEEEEee-C-C--eEEEEecccCCC
Q 023822          122 DRVVSLSLCSSKDCFI-SGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVFAVAF-G-G--YIRMFDARKYEK  194 (276)
Q Consensus       122 ~~i~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-d-~--~i~~~d~~~~~~  194 (276)
                      ..+..+++..-+..|. +-...+.|.+.++........+  .......++++|...++.... + +  .|...++.....
T Consensus        79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~  158 (263)
T d1npea_          79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR  158 (263)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred             ccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc
Confidence            5678899986555554 4455779999998866543333  233456788988776555444 2 2  344445544222


Q ss_pred             CCeeeeeecCCCCCceEEEECCCCcEEEEe-ecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEe
Q 023822          195 GPFDIFSVGGDISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG  269 (276)
Q Consensus       195 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  269 (276)
                        ..+  .......+..+++.+.++.|+.+ ...+.|...++........+.   +.. ...++++.  +.+|+..
T Consensus       159 --~~i--~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~---~~~-~P~~lav~--~~~lYwt  224 (263)
T d1npea_         159 --RIL--AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE---GLQ-YPFAVTSY--GKNLYYT  224 (263)
T ss_dssp             --EEE--ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE---CCC-SEEEEEEE--TTEEEEE
T ss_pred             --eee--eeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEEC---CCC-CcEEEEEE--CCEEEEE
Confidence              111  22233456889999887777665 456789999986554443443   222 34567765  3445444

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.98  E-value=0.0021  Score=52.48  Aligned_cols=207  Identities=12%  Similarity=0.153  Sum_probs=119.5

Q ss_pred             CCeEEEEEccCCeeeeeeeeee-------------------------------------e-ceEEEEEeccCCeEEEecc
Q 023822           55 DESIRLYDVTAATCLKTINSKK-------------------------------------Y-GVDLVCFTSHPTTVIYSSK   96 (276)
Q Consensus        55 d~~i~iwd~~~~~~~~~~~~~~-------------------------------------~-~v~~~~~~~~~~~l~~~~~   96 (276)
                      .|.|+-+|+.+|+.+-++....                                     . .-..+++.+....+..+..
T Consensus       181 ~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg  260 (596)
T d1w6sa_         181 RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTG  260 (596)
T ss_dssp             CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred             cCceEEEECCCCcEEEEeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccc
Confidence            4889999999999887653210                                     0 1123456666666666543


Q ss_pred             CC-------------CCCceEEEEccCCceeeeecccCc---------ceEEEEe-ccCCC---EEEEeeCCCeEEEEec
Q 023822           97 NG-------------WDESLRLLSLHDNKYLRYFKGHHD---------RVVSLSL-CSSKD---CFISGSLDRTVLLWDQ  150 (276)
Q Consensus        97 ~~-------------~d~~i~~~d~~~~~~~~~~~~~~~---------~i~~~~~-~~~~~---~l~~~~~d~~i~iwd~  150 (276)
                      +.             +...|.-.|+++++....++....         ....+.. ..+++   .++....+|.+.++|.
T Consensus       261 ~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr  340 (596)
T d1w6sa_         261 NPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDR  340 (596)
T ss_dssp             CCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEET
T ss_pred             cccccccccccccccccccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecC
Confidence            21             135588889999998876653221         1111221 22443   5778888999999999


Q ss_pred             cCceeeeeEeecC-----------------------------------------CCeeEecCCCcEEEEeeC--------
Q 023822          151 RAEKCQGLLRVQG-----------------------------------------RPAAAYDDQGLVFAVAFG--------  181 (276)
Q Consensus       151 ~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~l~~~~d--------  181 (276)
                      .+++.+.......                                         -...+++|+..++.....        
T Consensus       341 ~tG~~i~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~  420 (596)
T d1w6sa_         341 TDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEP  420 (596)
T ss_dssp             TTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEE
T ss_pred             CCCceeeeccccccccccccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEeccccccccccc
Confidence            9887664321100                                         013455666555444321        


Q ss_pred             --------------------------------CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCc
Q 023822          182 --------------------------------GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGH  229 (276)
Q Consensus       182 --------------------------------~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  229 (276)
                                                      |.|.-||+.+++.    ..... +..+...-.++-.|.+++.|+.||.
T Consensus       421 ~~~~~~~g~~~~g~~~~~~~~~~g~~~~~~~~G~l~A~D~~TG~~----~W~~~-~~~~~~gg~lsTagglVF~G~~Dg~  495 (596)
T d1w6sa_         421 FMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDY----KWEKM-ERFAVWGGTMATAGDLVFYGTLDGY  495 (596)
T ss_dssp             CCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCE----EEEEE-ESSCCCSBCEEETTTEEEEECTTSE
T ss_pred             ccccccccccccccccccccCcccCcccCCCcceEEEEeCCCCce----ecccC-CCCCCccceeEecCCEEEEECCCCe
Confidence                                            2444555554442    11110 1112222222335667888999999


Q ss_pred             EEEEECCCCcEEEEeecCCCCCCceEEEEECCCCc-EEEE
Q 023822          230 IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM-FVIS  268 (276)
Q Consensus       230 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~  268 (276)
                      ++-+|.++|+.+-++....+..+..  +.|..||+ |++.
T Consensus       496 l~A~Da~TGe~LW~~~~~~~~~a~P--~tY~~dGkQYvav  533 (596)
T d1w6sa_         496 LKARDSDTGDLLWKFKIPSGAIGYP--MTYTHKGTQYVAI  533 (596)
T ss_dssp             EEEEETTTCCEEEEEECSSCCCSCC--EEEEETTEEEEEE
T ss_pred             EEEEECCCCcEeeEEECCCCcccCC--eEEEECCEEEEEE
Confidence            9999999999999887543333332  44566885 5544

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.95  E-value=0.003  Score=51.27  Aligned_cols=208  Identities=13%  Similarity=0.109  Sum_probs=119.1

Q ss_pred             CCeEEEEEccCCeeeeeeeeee-------------------------------------ece-EEEEEeccCCeEEEecc
Q 023822           55 DESIRLYDVTAATCLKTINSKK-------------------------------------YGV-DLVCFTSHPTTVIYSSK   96 (276)
Q Consensus        55 d~~i~iwd~~~~~~~~~~~~~~-------------------------------------~~v-~~~~~~~~~~~l~~~~~   96 (276)
                      +|.|+-+|+.+|+.+-.+....                                     ..+ ...++.+....+..+..
T Consensus       175 ~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg  254 (571)
T d2ad6a1         175 RGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSG  254 (571)
T ss_dssp             CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred             cCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecc
Confidence            6789999999999887654211                                     011 23455666666655543


Q ss_pred             CC-------------CCCceEEEEccCCceeeeecccCcceE---------EEEeccCCC---EEEEeeCCCeEEEEecc
Q 023822           97 NG-------------WDESLRLLSLHDNKYLRYFKGHHDRVV---------SLSLCSSKD---CFISGSLDRTVLLWDQR  151 (276)
Q Consensus        97 ~~-------------~d~~i~~~d~~~~~~~~~~~~~~~~i~---------~~~~~~~~~---~l~~~~~d~~i~iwd~~  151 (276)
                      ..             +...+.-.|+++++.+..++.....+.         ......+++   .++.++.+|.+.+.|..
T Consensus       255 ~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~  334 (571)
T d2ad6a1         255 NPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRE  334 (571)
T ss_dssp             CCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETT
T ss_pred             cccCccccccccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecC
Confidence            21             135678889999998887764322221         122222443   46778889999999999


Q ss_pred             CceeeeeEeecC---------------------------------------C--CeeEecCCCcEEEEee-C--------
Q 023822          152 AEKCQGLLRVQG---------------------------------------R--PAAAYDDQGLVFAVAF-G--------  181 (276)
Q Consensus       152 ~~~~~~~~~~~~---------------------------------------~--~~~~~~~~~~~l~~~~-d--------  181 (276)
                      +++.+.......                                       .  ...+++|+..++.... +        
T Consensus       335 tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~  414 (571)
T d2ad6a1         335 NGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPF  414 (571)
T ss_dssp             TCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEEC
T ss_pred             CCcEeeeeccCCcccccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccc
Confidence            888653321100                                       0  1356677665555433 2        


Q ss_pred             -----------------------------CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEE
Q 023822          182 -----------------------------GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHV  232 (276)
Q Consensus       182 -----------------------------~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  232 (276)
                                                   |.|.-+|+++++.    ...... ..+..+-...-.+.++++|+.||.++-
T Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~----~W~~~~-~~~~~~g~l~TagglVf~G~~dg~l~A  489 (571)
T d2ad6a1         415 MLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKA----KWTKWE-KFAAWGGTLYTKGGLVWYATLDGYLKA  489 (571)
T ss_dssp             CCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCE----EEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEE
T ss_pred             cccccCCccccccceeeccccCCcccCCcccEEEeccCCCce----eeEcCC-CCCCCcceeEecCCEEEEECCCCeEEE
Confidence                                         2344455554442    111110 111111112224557778999999999


Q ss_pred             EECCCCcEEEEeecCCCCCCceEEEEECCCCc-EEEEe
Q 023822          233 LDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM-FVISG  269 (276)
Q Consensus       233 ~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~  269 (276)
                      +|.++|+.+-++.......+.  -+.|..||+ |+++.
T Consensus       490 ~Da~tGe~lW~~~l~~~~~a~--P~ty~~dGkqYi~v~  525 (571)
T d2ad6a1         490 LDNKDGKELWNFKMPSGGIGS--PMTYSFKGKQYIGSM  525 (571)
T ss_dssp             EETTTCCEEEEEECSSCCCSC--CEEEEETTEEEEEEE
T ss_pred             EECCCCcEEEEEECCCCceec--ceEEEECCEEEEEEE
Confidence            999999999988743222222  255666885 55443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.91  E-value=0.0023  Score=48.90  Aligned_cols=235  Identities=10%  Similarity=0.095  Sum_probs=125.3

Q ss_pred             cEEEEEEcCCCCEEEEeecC-CeEEEEEccCCeeeeeeeee-eeceEEEEEeccCCeEEEeccCC---CCCceEEEEccC
Q 023822           36 RISSMDFHKSSSYLVTASDD-ESIRLYDVTAATCLKTINSK-KYGVDLVCFTSHPTTVIYSSKNG---WDESLRLLSLHD  110 (276)
Q Consensus        36 ~v~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~---~d~~i~~~d~~~  110 (276)
                      .....++.+++.+++.|+.+ ..+.+||..+......-... ...-...+..++++.++.++...   .-..+.+||..+
T Consensus        77 ~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3          77 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             ceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCC
Confidence            34456788999999988755 58999999876643321111 11234567778899988887521   124688999887


Q ss_pred             Cceeeeec---------ccCc-----ceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEee------cC----CCe
Q 023822          111 NKYLRYFK---------GHHD-----RVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV------QG----RPA  166 (276)
Q Consensus       111 ~~~~~~~~---------~~~~-----~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~------~~----~~~  166 (276)
                      .+-...-.         .+..     .-..+...++++.+..+..++.+.++|..+.........      ..    ...
T Consensus       157 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (387)
T d1k3ia3         157 KTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNA  236 (387)
T ss_dssp             TEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEE
T ss_pred             CceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccE
Confidence            64321100         0000     011122335677777777777788888776654332210      00    012


Q ss_pred             eEe-cCCCcEEEEee--C-------CeEEEEecccCCCCCeeeeeec--CCCCCceEEEECCCCcEEEEeecCC------
Q 023822          167 AAY-DDQGLVFAVAF--G-------GYIRMFDARKYEKGPFDIFSVG--GDISDANVVKFSNDGRLMLLTTMEG------  228 (276)
Q Consensus       167 ~~~-~~~~~~l~~~~--d-------~~i~~~d~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg------  228 (276)
                      +.+ ..++++++.+.  +       ....+.+...............  .....-.+....++|++++.|+.+.      
T Consensus       237 ~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~  316 (387)
T d1k3ia3         237 VMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFED  316 (387)
T ss_dssp             EEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCC
T ss_pred             EEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCC
Confidence            222 23566666554  1       1233333332221111111111  1112233566678999999887431      


Q ss_pred             -----cEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEecC
Q 023822          229 -----HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGRV  271 (276)
Q Consensus       229 -----~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  271 (276)
                           .+.+||..+.+-...-. .+.....-......+||+.|+.|+.
T Consensus       317 ~~~~~~ve~Ydp~~~~W~~~~~-~~~~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         317 STPVFTPEIYVPEQDTFYKQNP-NSIVRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             CSBCCCCEEEEGGGTEEEECCC-CSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CcEeceEEEEECCCCeEEECCC-CCCcccceEEEEECCCCEEEEEeCC
Confidence                 47889987765432211 1111111123446899999999884

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.90  E-value=0.0036  Score=50.69  Aligned_cols=207  Identities=12%  Similarity=0.122  Sum_probs=120.0

Q ss_pred             CeEEEEEccCCeeeeeeeee------------------------------eec-eEEEEEeccCCeEEEeccC-------
Q 023822           56 ESIRLYDVTAATCLKTINSK------------------------------KYG-VDLVCFTSHPTTVIYSSKN-------   97 (276)
Q Consensus        56 ~~i~iwd~~~~~~~~~~~~~------------------------------~~~-v~~~~~~~~~~~l~~~~~~-------   97 (276)
                      |.|.-+|.++|+.+-.+..-                              ... -..+++.+....+..+..+       
T Consensus       178 G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~  257 (560)
T d1kv9a2         178 GFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNRE  257 (560)
T ss_dssp             CEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHH
T ss_pred             ceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccc
Confidence            67999999999988766421                              111 1235666666666654431       


Q ss_pred             ---------CCCCceEEEEccCCceeeeecccCcceE---------EEEeccCCC---EEEEeeCCCeEEEEeccCceee
Q 023822           98 ---------GWDESLRLLSLHDNKYLRYFKGHHDRVV---------SLSLCSSKD---CFISGSLDRTVLLWDQRAEKCQ  156 (276)
Q Consensus        98 ---------~~d~~i~~~d~~~~~~~~~~~~~~~~i~---------~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~  156 (276)
                               .+...|.-.|+++++....++.....+.         -+....+++   .++.+..+|.+.++|..+++.+
T Consensus       258 ~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i  337 (560)
T d1kv9a2         258 VRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI  337 (560)
T ss_dssp             HHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             cccccCCccccceeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccc
Confidence                     0134677789999988776654322221         122222333   5777888999999999988876


Q ss_pred             eeEeecC--------------------------------------CCeeEecCCCcEEEEee-C----------------
Q 023822          157 GLLRVQG--------------------------------------RPAAAYDDQGLVFAVAF-G----------------  181 (276)
Q Consensus       157 ~~~~~~~--------------------------------------~~~~~~~~~~~~l~~~~-d----------------  181 (276)
                      .......                                      -...+++|+..++.... +                
T Consensus       338 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~  417 (560)
T d1kv9a2         338 SAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRK  417 (560)
T ss_dssp             EEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCS
T ss_pred             ccccccccccccccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeecccccccccc
Confidence            4431111                                      01345667665555443 1                


Q ss_pred             --------------------CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEE
Q 023822          182 --------------------GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL  241 (276)
Q Consensus       182 --------------------~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  241 (276)
                                          |.+.-+|+.+++.    ..... ...+...-.+.-.|.++++|+.||.++-+|..+|+.+
T Consensus       418 ~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~----~W~~~-~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~L  492 (560)
T d1kv9a2         418 AFNTAAGFADATDVPAAVVSGALLAWDPVKQKA----AWKVP-YPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL  492 (560)
T ss_dssp             SCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEE----EEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             ccccccCcccccCCCCcccccceEEEeCCCCeE----eeecc-CCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEe
Confidence                                2345555555442    11111 1111211122334567888999999999999999999


Q ss_pred             EEeecCCCCCCceEEEEECCCCc-EEEEe
Q 023822          242 STYNVKPVSRNSTLEASFSPEGM-FVISG  269 (276)
Q Consensus       242 ~~~~~~~~~~~~v~~~~~s~~g~-~l~~~  269 (276)
                      -++....+..+..  +.+..+|+ ||++.
T Consensus       493 W~~~l~~~~~~~P--~ty~~dGkqyv~v~  519 (560)
T d1kv9a2         493 WQFEAQSGIVAAP--MTFELAGRQYVAIM  519 (560)
T ss_dssp             EEEECSSCCCSCC--EEEEETTEEEEEEE
T ss_pred             EEEECCCCccccC--EEEEECCEEEEEEE
Confidence            9888543333332  45566885 55543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.87  E-value=0.0028  Score=48.45  Aligned_cols=117  Identities=9%  Similarity=0.006  Sum_probs=74.2

Q ss_pred             EEEEEEcCCCCEEEEeecCC-----------eEEEEEccCCeeeee--ee-eeeeceEEEEEeccCCeEEEeccCCCCCc
Q 023822           37 ISSMDFHKSSSYLVTASDDE-----------SIRLYDVTAATCLKT--IN-SKKYGVDLVCFTSHPTTVIYSSKNGWDES  102 (276)
Q Consensus        37 v~~~~~~~~~~~l~~~~~d~-----------~i~iwd~~~~~~~~~--~~-~~~~~v~~~~~~~~~~~l~~~~~~~~d~~  102 (276)
                      +.......+|+.++.|+.+.           .+.+||..+++....  .. .+.......++.++++.++.++.+  ...
T Consensus        22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~--~~~   99 (387)
T d1k3ia3          22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGND--AKK   99 (387)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSS--TTC
T ss_pred             cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCC--Ccc
Confidence            33444456788888877421           367999987764322  11 122223456788899998888763  468


Q ss_pred             eEEEEccCCceeeeecc-cCcceEEEEeccCCCEEEEeeCC------CeEEEEeccCcee
Q 023822          103 LRLLSLHDNKYLRYFKG-HHDRVVSLSLCSSKDCFISGSLD------RTVLLWDQRAEKC  155 (276)
Q Consensus       103 i~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~  155 (276)
                      +.+||..+..-...-.. ....-...+..+|+++++.++.+      ..+.+||..+.+-
T Consensus       100 ~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W  159 (387)
T d1k3ia3         100 TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  159 (387)
T ss_dssp             EEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             eeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCce
Confidence            99999987754321111 11222456667899988888753      3689999887754

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.66  E-value=0.0074  Score=47.02  Aligned_cols=229  Identities=12%  Similarity=0.099  Sum_probs=123.1

Q ss_pred             CCCcEEEEEEcCCCCEEEEee-----cCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccC----------
Q 023822           33 YNGRISSMDFHKSSSYLVTAS-----DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN----------   97 (276)
Q Consensus        33 h~~~v~~~~~~~~~~~l~~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~----------   97 (276)
                      +.-.+..++++|+++++|.+-     ....++++|+.+++.+.... .......+.|.++++.|+.....          
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~  201 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE  201 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-ccccccceEEcCCCCEEEEEEeccccCcccccc
Confidence            333445678899999988442     23479999999998764322 22233678999999988765421          


Q ss_pred             ---CCCCceEEEEccCCce--eeeeccc--CcceEEEEeccCCCEEEEeeC---CCe--EEEEeccCceee--------e
Q 023822           98 ---GWDESLRLLSLHDNKY--LRYFKGH--HDRVVSLSLCSSKDCFISGSL---DRT--VLLWDQRAEKCQ--------G  157 (276)
Q Consensus        98 ---~~d~~i~~~d~~~~~~--~~~~~~~--~~~i~~~~~~~~~~~l~~~~~---d~~--i~iwd~~~~~~~--------~  157 (276)
                         .....|..+.+.+...  ...+...  ...+..+..++++++++....   +..  +.+.|+......        .
T Consensus       202 ~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  281 (430)
T d1qfma1         202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK  281 (430)
T ss_dssp             CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred             cccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeE
Confidence               1123577777766532  2233322  234566778889987664332   233  444454432110        1


Q ss_pred             eEee-cCCCeeEecCCCcEEEEee----CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEe-ecCC--c
Q 023822          158 LLRV-QGRPAAAYDDQGLVFAVAF----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLT-TMEG--H  229 (276)
Q Consensus       158 ~~~~-~~~~~~~~~~~~~~l~~~~----d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg--~  229 (276)
                      .... ........+.++.+++.+.    ++.|...++.......... .+..+...+..-.+...+.+|+.. -.++  .
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~-vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~  360 (430)
T d1qfma1         282 LIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKV-LVPEHEKDVLEWVACVRSNFLVLCYLHDVKNT  360 (430)
T ss_dssp             EECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEE-EECCCSSCEEEEEEEETTTEEEEEEEETTEEE
T ss_pred             eecccccceEEEecCCceeecccCcccccceeEEecCCCCccccceE-EecccCcceeeeEEEEECCEEEEEEEcCCEeE
Confidence            1111 1111222233344555444    3677777776543221111 223333444433444444455544 4554  5


Q ss_pred             EEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEE
Q 023822          230 IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFV  266 (276)
Q Consensus       230 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  266 (276)
                      |++++..+++......   ...+.+..+...++...+
T Consensus       361 l~v~~~~~~~~~~~~~---~~~~sv~~~~~~~~~~~~  394 (430)
T d1qfma1         361 LQLHDLATGALLKIFP---LEVGSVVGYSGQKKDTEI  394 (430)
T ss_dssp             EEEEETTTCCEEEEEC---CCSSEEEEEECCTTCSEE
T ss_pred             EEEEECCCCcEEEecC---CCCceEeeccCCCCCCEE
Confidence            8899998887765544   244566666655655433

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=0.006  Score=44.17  Aligned_cols=204  Identities=12%  Similarity=0.051  Sum_probs=119.0

Q ss_pred             EEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCc----eeeeecccCcc
Q 023822           48 YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK----YLRYFKGHHDR  123 (276)
Q Consensus        48 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~----~~~~~~~~~~~  123 (276)
                      +|+.+.. ..|+..++.+.+....+. ....+..+.|.+..+.+..+...  .+.|.-.++....    ....+......
T Consensus         3 fLl~s~~-~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~--~~~I~~~~l~~~~~~~~~~~~~~~~~~~   78 (266)
T d1ijqa1           3 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLS--QRMICSTQLDRAHGVSSYDTVISRDIQA   78 (266)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETT--TTEEEEEEC--------CEEEECSSCSC
T ss_pred             EEEEECC-CeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECC--CCEEEEEEecCCCCCcceEEEEeCCCCC
Confidence            3444433 358888887655433333 34467789999988888887642  6667766664321    11222223345


Q ss_pred             eEEEEeccCCCEEE-EeeCCCeEEEEeccCceeeeeEe--ecCCCeeEecCCC-cEEEEee--CCeEEEEecccCCCCCe
Q 023822          124 VVSLSLCSSKDCFI-SGSLDRTVLLWDQRAEKCQGLLR--VQGRPAAAYDDQG-LVFAVAF--GGYIRMFDARKYEKGPF  197 (276)
Q Consensus       124 i~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~-~~l~~~~--d~~i~~~d~~~~~~~~~  197 (276)
                      +..+++.+.+..|. +-...++|.+.++..........  ......++++|.. .++.+..  .+.|...++.....   
T Consensus        79 p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~---  155 (266)
T d1ijqa1          79 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---  155 (266)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE---
T ss_pred             cceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce---
Confidence            67788877555444 44556789999998766544442  2345678888855 4444433  35677777654321   


Q ss_pred             eeeeecCCCCCceEEEECCCCcEEEEe-ecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEEC
Q 023822          198 DIFSVGGDISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS  260 (276)
Q Consensus       198 ~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s  260 (276)
                       ..........+..+++.+.++.|+.+ ...+.|...++............ .......++++.
T Consensus       156 -~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~-~~~~~p~~lav~  217 (266)
T d1ijqa1         156 -YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE-KRLAHPFSLAVF  217 (266)
T ss_dssp             -EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECT-TTTSSEEEEEEE
T ss_pred             -ecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCC-CcccccEEEEEE
Confidence             11122233457889999987766665 45678999998654443333321 122345566665

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.38  E-value=0.007  Score=49.09  Aligned_cols=80  Identities=16%  Similarity=0.196  Sum_probs=48.3

Q ss_pred             CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECC
Q 023822          182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP  261 (276)
Q Consensus       182 ~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~  261 (276)
                      |.+.-||+.+++.    ....... .+...-..+-.|.++++|+.||.++.+|.++|+.+-++....+..+..  +.|..
T Consensus       457 G~l~AiD~~tGk~----~W~~~~~-~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P--~ty~~  529 (573)
T d1kb0a2         457 GRLLAWDPVAQKA----AWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAP--STYMV  529 (573)
T ss_dssp             EEEEEEETTTTEE----EEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEE
T ss_pred             ccEEEeCCCCCce----EeeecCC-CCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccC--EEEEE
Confidence            4566677766553    2221111 122111233357788889999999999999999999988543333332  45566


Q ss_pred             CCc-EEEE
Q 023822          262 EGM-FVIS  268 (276)
Q Consensus       262 ~g~-~l~~  268 (276)
                      +|+ |++.
T Consensus       530 ~GkQYv~v  537 (573)
T d1kb0a2         530 DGRQYVSV  537 (573)
T ss_dssp             TTEEEEEE
T ss_pred             CCEEEEEE
Confidence            886 4443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.25  E-value=0.028  Score=45.58  Aligned_cols=80  Identities=14%  Similarity=0.199  Sum_probs=50.7

Q ss_pred             CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEECCCCcEEEEeecCCCCCCceEEEEECC
Q 023822          182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP  261 (276)
Q Consensus       182 ~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~  261 (276)
                      |.|.-+|+.+++.    ....... .++..-..+..|.++++|+.||.++-+|.++|+.+-++....+..+..  +.|..
T Consensus       466 G~l~AiD~~TG~i----~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P--~ty~~  538 (582)
T d1flga_         466 GSLRAMDPVSGKV----VWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPP--ITWEQ  538 (582)
T ss_dssp             EEEEEECTTTCCE----EEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEE
T ss_pred             CeEEEEcCCCCcE----EeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccC--EEEEE
Confidence            5677777777654    2222111 222222234466788889999999999999999999988533222322  56677


Q ss_pred             CCc-EEEE
Q 023822          262 EGM-FVIS  268 (276)
Q Consensus       262 ~g~-~l~~  268 (276)
                      +|+ |++.
T Consensus       539 ~G~qYv~i  546 (582)
T d1flga_         539 DGEQYLGV  546 (582)
T ss_dssp             TTEEEEEE
T ss_pred             CCEEEEEE
Confidence            885 5544

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.06  E-value=0.016  Score=43.45  Aligned_cols=144  Identities=15%  Similarity=0.137  Sum_probs=78.9

Q ss_pred             eEEEEeccCCCEEEEeeC------------CCeEEEEeccCceeeee-E--eecCCC-------ee--EecCCCc--EEE
Q 023822          124 VVSLSLCSSKDCFISGSL------------DRTVLLWDQRAEKCQGL-L--RVQGRP-------AA--AYDDQGL--VFA  177 (276)
Q Consensus       124 i~~~~~~~~~~~l~~~~~------------d~~i~iwd~~~~~~~~~-~--~~~~~~-------~~--~~~~~~~--~l~  177 (276)
                      .-+|...|++..+++++.            .|.|.++|+.+.+.... +  ......       .+  .-.++++  +++
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            346777788876665532            48999999886543221 1  111111       12  2233443  334


Q ss_pred             Eee---CCeEEEEecccCCCCCeeeeeec-CCCCCceEEEECCCCcEEEEee--c-------------CCcEEEEECCCC
Q 023822          178 VAF---GGYIRMFDARKYEKGPFDIFSVG-GDISDANVVKFSNDGRLMLLTT--M-------------EGHIHVLDSFRG  238 (276)
Q Consensus       178 ~~~---d~~i~~~d~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~--~-------------dg~i~i~d~~~~  238 (276)
                      +..   ..+|.+|++.............. ......+.+++..+|.++++-.  .             -+...+|....+
T Consensus       117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~  196 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN  196 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS
T ss_pred             EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC
Confidence            332   46788888765432111112222 2224578899999998888731  1             123344444444


Q ss_pred             cEEEEeecCCCCCCceEEEEECCCCcEEEEecC
Q 023822          239 TLLSTYNVKPVSRNSTLEASFSPEGMFVISGRV  271 (276)
Q Consensus       239 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  271 (276)
                      +......    .-...+.++++||+++|+.+..
T Consensus       197 ~~~~~~~----~l~~pNGI~~s~d~~~lyVa~t  225 (340)
T d1v04a_         197 DVRVVAE----GFDFANGINISPDGKYVYIAEL  225 (340)
T ss_dssp             CEEEEEE----EESSEEEEEECTTSSEEEEEEG
T ss_pred             ceEEEcC----CCCccceeEECCCCCEEEEEeC
Confidence            4333233    2356789999999998877643

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.88  E-value=0.05  Score=40.74  Aligned_cols=199  Identities=14%  Similarity=0.142  Sum_probs=110.1

Q ss_pred             CCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEe------ccCCeEEEeccCC-CCCceEEEEccC-Cceee
Q 023822           44 KSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFT------SHPTTVIYSSKNG-WDESLRLLSLHD-NKYLR  115 (276)
Q Consensus        44 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~------~~~~~l~~~~~~~-~d~~i~~~d~~~-~~~~~  115 (276)
                      |+..+++....++-|.+||++ |+.++.+..  +.+..+..-      .....+++++... ....|.+|.+.. ...+.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~--Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYHT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECCS--SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEeccc--CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            345677777777779999985 777777643  234433332      2233455555321 023577887753 22333


Q ss_pred             eeccc-------CcceEEEEe--ccC-CC-EEEEeeCCCeEEEEeccC---c----eeeeeEe-ecCCCeeEecCCCcEE
Q 023822          116 YFKGH-------HDRVVSLSL--CSS-KD-CFISGSLDRTVLLWDQRA---E----KCQGLLR-VQGRPAAAYDDQGLVF  176 (276)
Q Consensus       116 ~~~~~-------~~~i~~~~~--~~~-~~-~l~~~~~d~~i~iwd~~~---~----~~~~~~~-~~~~~~~~~~~~~~~l  176 (276)
                      .+...       ...+..+|+  ++. +. +++....+|.+..|.+..   +    +.++.+. ......+.+++....|
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~L  194 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSL  194 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEE
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcE
Confidence            33211       124666776  554 44 566677789998887642   2    2333332 2345578888887777


Q ss_pred             EEee-CCeEEEEecccCCCC-Ceeeeeec--CCCCCceEEEECC--CC-cEEEEee-cCCcEEEEECCC-CcEEEEee
Q 023822          177 AVAF-GGYIRMFDARKYEKG-PFDIFSVG--GDISDANVVKFSN--DG-RLMLLTT-MEGHIHVLDSFR-GTLLSTYN  245 (276)
Q Consensus       177 ~~~~-d~~i~~~d~~~~~~~-~~~~~~~~--~~~~~i~~~~~~~--~~-~~l~~~~-~dg~i~i~d~~~-~~~~~~~~  245 (276)
                      ..+. +..|..++....... ...+....  .....+-.+++-.  ++ .||++++ .+++..+||... .+.+..|.
T Consensus       195 yisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~  272 (353)
T d1h6la_         195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQ  272 (353)
T ss_dssp             EEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             EEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEE
Confidence            7776 555655555422211 11122221  1234566666543  32 2555544 578899999876 46666665

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.73  E-value=0.036  Score=42.98  Aligned_cols=102  Identities=13%  Similarity=0.064  Sum_probs=66.8

Q ss_pred             ceEEEEeccCCCEEEEe-eCCC----eEEEEeccCceeeeeE-eecCCCeeEecCCCcEEEEee-C--------------
Q 023822          123 RVVSLSLCSSKDCFISG-SLDR----TVLLWDQRAEKCQGLL-RVQGRPAAAYDDQGLVFAVAF-G--------------  181 (276)
Q Consensus       123 ~i~~~~~~~~~~~l~~~-~~d~----~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-d--------------  181 (276)
                      .+...+++|++++++.+ +.+|    .|+++|+.+++.+... .......++|.+++..|.... +              
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~  205 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence            34556789999977743 3333    6999999999876533 333446789999997665432 2              


Q ss_pred             --CeEEEEecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEe
Q 023822          182 --GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLT  224 (276)
Q Consensus       182 --~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  224 (276)
                        ..+..+.+.+.......++........+..+..++++++++..
T Consensus       206 ~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~  250 (430)
T d1qfma1         206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLS  250 (430)
T ss_dssp             CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred             CcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEE
Confidence              3577777776544333344433333446677889999987654

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.59  E-value=0.13  Score=41.42  Aligned_cols=217  Identities=12%  Similarity=0.097  Sum_probs=116.5

Q ss_pred             ehHHHhhccccceeeccCCCcEEEEEEcC---CCCEEEEeecCCeEEEEEcc-CCeeeeeeeeeee----ce-------E
Q 023822           16 LSEEILQSMEVGMSFRDYNGRISSMDFHK---SSSYLVTASDDESIRLYDVT-AATCLKTINSKKY----GV-------D   80 (276)
Q Consensus        16 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~----~v-------~   80 (276)
                      ++.+...++++.-.++--  ....+.-+|   ++...++.+.++.|...|.. +|+.+-++.....    ..       .
T Consensus        32 I~~~Nv~~L~~aW~~~~g--~~~~~~~tP~v~~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~r  109 (571)
T d2ad6a1          32 INKSNVKNVKAAWSFSTG--VLNGHEGAPLVIGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDR  109 (571)
T ss_dssp             SCTTTGGGCEEEEEEECS--CCSCCCSCCEEETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCC
T ss_pred             cCHhHhhhceEEEEEeCC--CCCCcccCCEEECCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCC
Confidence            455556666666555421  111111223   44444444446788888874 6888877642111    00       1


Q ss_pred             EEEEeccCCeEEEeccCCCCCceEEEEccCCceeeeecccC----cceEEEEeccCCCEEEEee------CCCeEEEEec
Q 023822           81 LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHH----DRVVSLSLCSSKDCFISGS------LDRTVLLWDQ  150 (276)
Q Consensus        81 ~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~------~d~~i~iwd~  150 (276)
                      .+++.  +..++.++.   ++.+.-.|.++++.........    ..++.--.-.++. ++.+.      .+|.|+-+|+
T Consensus       110 g~a~~--~~~i~~~~~---~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~-vivg~~~~~~~~~G~v~a~D~  183 (571)
T d2ad6a1         110 GLAYG--AGQIVKKQA---NGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDT-VLMGCSGAELGVRGAVNAFDL  183 (571)
T ss_dssp             CCEEE--TTEEEEECT---TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTE-EEEECBCGGGTCCCEEEEEET
T ss_pred             cceee--CCeEEEEeC---CCcEEeeehhhhhhhccccccccccccceeecCeEeCCe-EEEeeccccccccCcEEEEEC
Confidence            23332  445666666   9999999999999876653211    1111100111333 44444      2678999999


Q ss_pred             cCceeeeeEeecC---------------------------------------C-CeeEecCCCcEEEEeeC---------
Q 023822          151 RAEKCQGLLRVQG---------------------------------------R-PAAAYDDQGLVFAVAFG---------  181 (276)
Q Consensus       151 ~~~~~~~~~~~~~---------------------------------------~-~~~~~~~~~~~l~~~~d---------  181 (276)
                      ++++.+-.++..+                                       + ...++++...++..+..         
T Consensus       184 ~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~  263 (571)
T d2ad6a1         184 KTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETM  263 (571)
T ss_dssp             TTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGG
T ss_pred             CCCcEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccc
Confidence            9998776542110                                       0 12355555544443331         


Q ss_pred             --------CeEEEEecccCCCCCeeeeeecCCC---------CCceEEEECCCCc---EEEEeecCCcEEEEECCCCcEE
Q 023822          182 --------GYIRMFDARKYEKGPFDIFSVGGDI---------SDANVVKFSNDGR---LMLLTTMEGHIHVLDSFRGTLL  241 (276)
Q Consensus       182 --------~~i~~~d~~~~~~~~~~~~~~~~~~---------~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~  241 (276)
                              ..+.-.|.++++.    ........         .+........+|+   .++.++.+|.++++|..+|+.+
T Consensus       264 r~g~n~~s~svvAld~~TG~~----~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i  339 (571)
T d2ad6a1         264 RPGDNKWTMTIWGRDLDTGMA----KWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLI  339 (571)
T ss_dssp             SCSCCTTTTEEEEEETTTCCE----EEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred             cccccccccceeeeeccchhh----eecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEe
Confidence                    3456667666553    22221111         1112222223443   5677889999999999999987


Q ss_pred             EEe
Q 023822          242 STY  244 (276)
Q Consensus       242 ~~~  244 (276)
                      ...
T Consensus       340 ~~~  342 (571)
T d2ad6a1         340 VAE  342 (571)
T ss_dssp             EEE
T ss_pred             eee
Confidence            543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.58  E-value=0.038  Score=44.63  Aligned_cols=78  Identities=12%  Similarity=0.031  Sum_probs=51.6

Q ss_pred             CceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecC---CCeeEecCCCc-EE
Q 023822          101 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG---RPAAAYDDQGL-VF  176 (276)
Q Consensus       101 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~-~l  176 (276)
                      |.|.-||+.+++.+...+... +...=...-.+.++++++.||.++.+|.++++.+-.++...   ..-+.|..+|+ ++
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv  535 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV  535 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            467888888888887765332 21111223367788889999999999999999998875433   12355555664 44


Q ss_pred             EEe
Q 023822          177 AVA  179 (276)
Q Consensus       177 ~~~  179 (276)
                      ++.
T Consensus       536 ~v~  538 (573)
T d1kb0a2         536 SVA  538 (573)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            433

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.46  E-value=0.032  Score=44.98  Aligned_cols=77  Identities=9%  Similarity=0.039  Sum_probs=51.6

Q ss_pred             CceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecC---CCeeEecCCCc-EE
Q 023822          101 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG---RPAAAYDDQGL-VF  176 (276)
Q Consensus       101 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~-~l  176 (276)
                      |.|.-+|+.+++.+..... ..+...-.+.-.+.+++.++.||.++.+|.++++.+-.++...   ..-+.+..+|+ ++
T Consensus       438 G~l~A~D~~tGk~~W~~~~-~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv  516 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPY-PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYV  516 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             cceEEEeCCCCeEeeeccC-CCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            5688899999988876642 2222222233356788889999999999999999988774432   22355556664 44


Q ss_pred             EE
Q 023822          177 AV  178 (276)
Q Consensus       177 ~~  178 (276)
                      ++
T Consensus       517 ~v  518 (560)
T d1kv9a2         517 AI  518 (560)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.11  Score=37.32  Aligned_cols=206  Identities=11%  Similarity=0.073  Sum_probs=89.8

Q ss_pred             eEEEEEccCCeeeee--eeeeeeceEEEEEeccCCeEEEeccCC------CCCceEEEEccCCceeee--ecccCcceEE
Q 023822           57 SIRLYDVTAATCLKT--INSKKYGVDLVCFTSHPTTVIYSSKNG------WDESLRLLSLHDNKYLRY--FKGHHDRVVS  126 (276)
Q Consensus        57 ~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~~~------~d~~i~~~d~~~~~~~~~--~~~~~~~i~~  126 (276)
                      .+.+||+++++-...  +......-  .+..-+++.++.++...      .-..+.+||..+.+....  +......-.+
T Consensus        20 ~~~~yd~~t~~W~~~~~~p~~R~~~--~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~   97 (288)
T d1zgka1          20 YLEAYNPSNGTWLRLADLQVPRSGL--AGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV   97 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSC--EEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEE
T ss_pred             eEEEEECCCCeEEECCCCCCcccee--EEEEECCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceec
Confidence            578999988753332  22211111  12222555666655310      024677888766543221  1111111112


Q ss_pred             EEeccCCCEEEEeeCCCe-----EEEEeccCceeeeeEeecC---CCeeEecCCCcEEEEee-C-----CeEEEEecccC
Q 023822          127 LSLCSSKDCFISGSLDRT-----VLLWDQRAEKCQGLLRVQG---RPAAAYDDQGLVFAVAF-G-----GYIRMFDARKY  192 (276)
Q Consensus       127 ~~~~~~~~~l~~~~~d~~-----i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~-d-----~~i~~~d~~~~  192 (276)
                      ..  .+++.++.++.++.     ...+|..+...........   ...+... ++.+++.+. +     ..+..||....
T Consensus        98 ~~--~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~~~d~~~~  174 (288)
T d1zgka1          98 GV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERN  174 (288)
T ss_dssp             EE--ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred             cc--cceeeEEecceecccccceeeeeccccCccccccccccccccceeeee-eecceEecCcccccccceEEEeecccc
Confidence            22  25666666554433     4446665554322211111   1122333 334444433 2     45777877653


Q ss_pred             CCCCeeeeeecCCCCCceEEEECCCCcEEEEeecC-----CcEEEEECCCCcEEEEeecCCCCCCceEEEEECCCCcEEE
Q 023822          193 EKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME-----GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVI  267 (276)
Q Consensus       193 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  267 (276)
                      +-   .............+... .+++.++.|+.+     .....+|..+.+....-. .+...... +++ ..++++++
T Consensus       175 ~~---~~~~~~~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~r~~~-~~~-~~~~~l~v  247 (288)
T d1zgka1         175 EW---RMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP-MKHRRSAL-GIT-VHQGRIYV  247 (288)
T ss_dssp             EE---EECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC-CSSCCBSC-EEE-EETTEEEE
T ss_pred             cc---ccccccccccccccccc-eeeeEEEecCccccccccceeeeeecceeeecccC-ccCcccce-EEE-EECCEEEE
Confidence            21   11111111111122222 245666666544     356788877765543222 11111111 222 23688888


Q ss_pred             EecCCCC
Q 023822          268 SGRVSPF  274 (276)
Q Consensus       268 ~~~~dg~  274 (276)
                      .|+.++.
T Consensus       248 ~GG~~~~  254 (288)
T d1zgka1         248 LGGYDGH  254 (288)
T ss_dssp             ECCBCSS
T ss_pred             EecCCCC
Confidence            8887653

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.19  E-value=0.083  Score=42.67  Aligned_cols=77  Identities=18%  Similarity=0.225  Sum_probs=53.6

Q ss_pred             CceEEEEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecC---CCeeEecCCCc-EE
Q 023822          101 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG---RPAAAYDDQGL-VF  176 (276)
Q Consensus       101 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~-~l  176 (276)
                      |.|.-+|+.+++.+.....+. ++..-..+..+.++++++.||.++.+|.++++.+-.++...   ..-+.+..+|+ ++
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv  544 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            678888999998887765332 22222233467788889999999999999999998885433   22467777774 44


Q ss_pred             EE
Q 023822          177 AV  178 (276)
Q Consensus       177 ~~  178 (276)
                      +.
T Consensus       545 ~i  546 (582)
T d1flga_         545 GV  546 (582)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.18  E-value=0.15  Score=37.94  Aligned_cols=186  Identities=7%  Similarity=0.057  Sum_probs=102.7

Q ss_pred             EEEEEEcCCCCEEEEeec------------CCeEEEEEccCCeeee-eeeeee-------eceEEEEE--eccCCe-EEE
Q 023822           37 ISSMDFHKSSSYLVTASD------------DESIRLYDVTAATCLK-TINSKK-------YGVDLVCF--TSHPTT-VIY   93 (276)
Q Consensus        37 v~~~~~~~~~~~l~~~~~------------d~~i~iwd~~~~~~~~-~~~~~~-------~~v~~~~~--~~~~~~-l~~   93 (276)
                      .-.++..|+|..+++++.            .|.|.++|+.+.+... .+....       -....+..  .++++. |++
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            446788899887766542            4899999987653221 221111       12234443  345553 444


Q ss_pred             eccCCCCCceEEEEccCCce-e---eeec-ccCcceEEEEeccCCCEEEEeeC---------------CCeEEEEeccCc
Q 023822           94 SSKNGWDESLRLLSLHDNKY-L---RYFK-GHHDRVVSLSLCSSKDCFISGSL---------------DRTVLLWDQRAE  153 (276)
Q Consensus        94 ~~~~~~d~~i~~~d~~~~~~-~---~~~~-~~~~~i~~~~~~~~~~~l~~~~~---------------d~~i~iwd~~~~  153 (276)
                      ....+...+|.+|++..... +   ..+. ......+++.+..++.+++|-..               -+.-.+|....+
T Consensus       117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~  196 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN  196 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS
T ss_pred             EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC
Confidence            33212267788888764432 1   1222 12234688888888888777321               022333333333


Q ss_pred             eeeeeE-eecCCCeeEecCCCcEEEEee--CCeEEEEecccCCCCCeeeeeecCCCCCceEEEECC-CCcEEEEe
Q 023822          154 KCQGLL-RVQGRPAAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN-DGRLMLLT  224 (276)
Q Consensus       154 ~~~~~~-~~~~~~~~~~~~~~~~l~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~  224 (276)
                      +..... .....+.++++|+++++.++.  .+.|++|++.....  ........-...+-.+.+.+ +|.+.+++
T Consensus       197 ~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~--l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         197 DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWT--LTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSC--EEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             ceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcc--cceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            332222 345567899999998777766  79999999875332  11222212334566788876 45544443

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.89  E-value=0.26  Score=38.22  Aligned_cols=51  Identities=10%  Similarity=0.199  Sum_probs=35.7

Q ss_pred             cceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeec----------CCCeeEecCC
Q 023822          122 DRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ----------GRPAAAYDDQ  172 (276)
Q Consensus       122 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----------~~~~~~~~~~  172 (276)
                      ...++|+|.|++++|++--..|+|++++..+++........          +...++++|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            45689999999998877655799999988776554333211          1235888885

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.68  E-value=0.28  Score=36.99  Aligned_cols=177  Identities=14%  Similarity=0.124  Sum_probs=104.3

Q ss_pred             CcEEEEEEcCCCCEEEEeecCCeEEEEEccC---------CeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEE
Q 023822           35 GRISSMDFHKSSSYLVTASDDESIRLYDVTA---------ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL  105 (276)
Q Consensus        35 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~  105 (276)
                      ....-++.++...+++.|+.++ ++|..++.         .......+..-..|..++|+.+  .+++..    ++.+..
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~~----~~~l~~  109 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVST----RNALYS  109 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEEE----SSEEEE
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEEe----CCCEEE
Confidence            4566788888777888888775 66766431         1111111112235888888644  566654    677888


Q ss_pred             EEccCCceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeE-------eecCCCeeEecCCCcEEEE
Q 023822          106 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-------RVQGRPAAAYDDQGLVFAV  178 (276)
Q Consensus       106 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~  178 (276)
                      ++...-...........++..+.++|.  .++....++.+.++++...+.....       -.....+++|++.++.+++
T Consensus       110 ~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~  187 (381)
T d1xipa_         110 LDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFA  187 (381)
T ss_dssp             EESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEE
T ss_pred             EEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEE
Confidence            887665444444444566788887764  5677777899999999887543322       2234557788888877776


Q ss_pred             eeCCeEEEE-ecccCCCCCeeeeeecCCCCCceEEEECCCCcEEEEe
Q 023822          179 AFGGYIRMF-DARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLT  224 (276)
Q Consensus       179 ~~d~~i~~~-d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  224 (276)
                      +.++...+. ++...    ..+-........+.+|.|-.+..++++-
T Consensus       188 ~~g~~~q~k~~i~~~----~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         188 WRNGEMEKQFEFSLP----SELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EETTEEEEEEEECCC----HHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             eCCCceeeccCCCCc----cccCCCcCCCcceeEEEEecCceEEEEE
Confidence            654333221 11110    0011111223467889998877766543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.65  E-value=0.24  Score=35.91  Aligned_cols=138  Identities=9%  Similarity=0.086  Sum_probs=89.2

Q ss_pred             CCceEEEEccCCce-eeeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEee-cCCCeeEecCCCcEEE
Q 023822          100 DESLRLLSLHDNKY-LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV-QGRPAAAYDDQGLVFA  177 (276)
Q Consensus       100 d~~i~~~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~l~  177 (276)
                      ..++.+.|+.++.. .+.--.    --+.-.+|..+.|+.-+ ..++.++|+++.+.++.... .++..-.|-.+ +.|+
T Consensus        44 ~~~VvIidl~n~~~~~Rrpi~----AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~-~~L~  117 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRRPIS----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL-NTVA  117 (327)
T ss_dssp             EEEEEEEETTSTTSCEEEECC----CSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEESSS-SEEE
T ss_pred             CceEEEEECCCCCcceecccc----hhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEecCC-CEEE
Confidence            56788888876543 222111    12344678888777666 56899999999998888744 34444455444 4455


Q ss_pred             EeeCCeEEEEecccCCCCCeeeeeecCC--CCCceEEEECCCCcEEEEee---c----CCcEEEEECCCCcEEEEee
Q 023822          178 VAFGGYIRMFDARKYEKGPFDIFSVGGD--ISDANVVKFSNDGRLMLLTT---M----EGHIHVLDSFRGTLLSTYN  245 (276)
Q Consensus       178 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~---~----dg~i~i~d~~~~~~~~~~~  245 (276)
                      .-++..|+-|+++... .|...+.....  ...|..-..++++++++..+   .    .|.+.+|..+. +.-+.++
T Consensus       118 lVT~taVYHW~~~g~s-~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er-~~sQ~ie  192 (327)
T d1utca2         118 LVTDNAVYHWSMEGES-QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIE  192 (327)
T ss_dssp             EECSSEEEEEESSSSC-CCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEEC
T ss_pred             EEcCCceEEEcccCCC-CchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc-CcCcccc
Confidence            5557889999996533 46555554322  34566677888999877643   2    36788999654 4444555

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.45  E-value=0.33  Score=36.21  Aligned_cols=135  Identities=10%  Similarity=0.110  Sum_probs=77.6

Q ss_pred             CCCEEEEeeCCCeEEEEeccCceeeeeEeecCCCeeE------ecCCCcEEEEee--C---CeEEEEecccCCCCCeeee
Q 023822          132 SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAA------YDDQGLVFAVAF--G---GYIRMFDARKYEKGPFDIF  200 (276)
Q Consensus       132 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~--d---~~i~~~d~~~~~~~~~~~~  200 (276)
                      +..+++....++-|++||+. ++.+..+....++.+.      +.....-+++++  +   ..|.+|.+..... .+...
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~-~l~~~  116 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLE-GKMLHSYHTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TLQSI  116 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETT-CCEEEECCSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTT-EEEEC
T ss_pred             CccEEEEEcCcCCEEEEcCC-CcEEEecccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccc-ccccc
Confidence            44577777777779999986 6666666544444333      223333344444  2   3677887753221 11111


Q ss_pred             ee-----cCCCCCceEEEE--CCC-Cc-EEEEeecCCcEEEEECC---CC----cEEEEeecCCCCCCceEEEEECCCCc
Q 023822          201 SV-----GGDISDANVVKF--SND-GR-LMLLTTMEGHIHVLDSF---RG----TLLSTYNVKPVSRNSTLEASFSPEGM  264 (276)
Q Consensus       201 ~~-----~~~~~~i~~~~~--~~~-~~-~l~~~~~dg~i~i~d~~---~~----~~~~~~~~~~~~~~~v~~~~~s~~g~  264 (276)
                      ..     ......+..+++  +|. |. ++++...+|.+..|.+.   ++    +.++.+.    ....+-.+.+.+...
T Consensus       117 ~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~----~~~q~EGCVvDde~~  192 (353)
T d1h6la_         117 TDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK----MNSQTEGMAADDEYG  192 (353)
T ss_dssp             SCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE----CSSCEEEEEEETTTT
T ss_pred             cccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC----CCCccceEEEeCCCC
Confidence            11     011224667776  664 44 45666778988888663   33    3444554    456788888888887


Q ss_pred             EEEEecCC
Q 023822          265 FVISGRVS  272 (276)
Q Consensus       265 ~l~~~~~d  272 (276)
                      .|+.+-++
T Consensus       193 ~LyisEE~  200 (353)
T d1h6la_         193 SLYIAEED  200 (353)
T ss_dssp             EEEEEETT
T ss_pred             cEEEecCc
Confidence            77777543

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.26  E-value=0.4  Score=36.12  Aligned_cols=180  Identities=7%  Similarity=-0.044  Sum_probs=94.1

Q ss_pred             eceEEEEEeccCCeEEEeccCCCCCceEEEEccCC---------ceeeeecccCcceEEEEeccCCCEEEEeeCCCeEEE
Q 023822           77 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN---------KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLL  147 (276)
Q Consensus        77 ~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i  147 (276)
                      ....-++.++....++.++.   + .+.+.....-         ......+..-..|..++|+.+  .|+.. .++.+..
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~---~-~l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~  109 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASG---S-KAVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYS  109 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEET---T-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEE
T ss_pred             cccceEEEeCCCCEEEEECC---C-EEEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEE
Confidence            34667888877777777664   3 5666664210         000111111235888999644  45544 4567888


Q ss_pred             EeccCceeeeeEee--cCCCeeEecCCCcEEEEeeCCeEEEEecccCCCCCeee--eeecCCCCCceEEEECCCCcEEEE
Q 023822          148 WDQRAEKCQGLLRV--QGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDI--FSVGGDISDANVVKFSNDGRLMLL  223 (276)
Q Consensus       148 wd~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~  223 (276)
                      ++...-........  .+...+.++|. ..++...++.+.++++...+..+...  ... .-...+.+++|++.|+.+++
T Consensus       110 ~~~~~l~~~~~~~~~~~~~~~~~~~p~-~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~-~~~~~~~~v~ws~kgkq~v~  187 (381)
T d1xipa_         110 LDLEELSEFRTVTSFEKPVFQLKNVNN-TLVILNSVNDLSALDLRTKSTKQLAQNVTSF-DVTNSQLAVLLKDRSFQSFA  187 (381)
T ss_dssp             EESSSTTCEEEEEECSSCEEEEEECSS-EEEEEETTSEEEEEETTTCCEEEEEESEEEE-EECSSEEEEEETTSCEEEEE
T ss_pred             EEeeccccccccccccccccceecCCc-eeEEEecCCCEEEEEeccCccccccCCcceE-EecCCceEEEEeCCcEEEEE
Confidence            88766443333322  23345555553 34455558999999988764321110  001 11245677777777777766


Q ss_pred             eecCCcEEEE-ECCCCcEEEEeecCCCCCCceEEEEECCCCcEEEEe
Q 023822          224 TTMEGHIHVL-DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG  269 (276)
Q Consensus       224 ~~~dg~i~i~-d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  269 (276)
                      +..++ ..+- ++....   .+.........+.++.|..+..++++-
T Consensus       188 ~~g~~-~q~k~~i~~~~---~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         188 WRNGE-MEKQFEFSLPS---ELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EETTE-EEEEEEECCCH---HHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             eCCCc-eeeccCCCCcc---ccCCCcCCCcceeEEEEecCceEEEEE
Confidence            63321 1111 111111   111111234578899998877776654

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.13  E-value=0.34  Score=34.54  Aligned_cols=104  Identities=11%  Similarity=0.138  Sum_probs=49.4

Q ss_pred             CCCEEEEeeCC-----CeEEEEeccCceeeeeEee--cC-CCeeEecCCCcEEEEee-C-----CeEEEEecccCCCCCe
Q 023822          132 SKDCFISGSLD-----RTVLLWDQRAEKCQGLLRV--QG-RPAAAYDDQGLVFAVAF-G-----GYIRMFDARKYEKGPF  197 (276)
Q Consensus       132 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~--~~-~~~~~~~~~~~~l~~~~-d-----~~i~~~d~~~~~~~~~  197 (276)
                      ++..++.++.+     ..+..||..+.+....-..  .. ....... .+.+++.+. +     .....+|..+.+-  .
T Consensus       148 ~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~--~  224 (288)
T d1zgka1         148 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETW--T  224 (288)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEE--E
T ss_pred             eecceEecCcccccccceEEEeeccccccccccccccccccccccce-eeeEEEecCccccccccceeeeeecceee--e
Confidence            44555555543     3577888776554322211  11 1122333 344444443 2     4566777665321  0


Q ss_pred             eeeeecCCCCCceEEEECCCCcEEEEeecCC-----cEEEEECCCCcE
Q 023822          198 DIFSVGGDISDANVVKFSNDGRLMLLTTMEG-----HIHVLDSFRGTL  240 (276)
Q Consensus       198 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~  240 (276)
                      ........... .+++. .++++++.|+.++     .|.+||+.+.+-
T Consensus       225 ~~~~~p~~r~~-~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W  270 (288)
T d1zgka1         225 FVAPMKHRRSA-LGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTW  270 (288)
T ss_dssp             ECCCCSSCCBS-CEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred             cccCccCcccc-eEEEE-ECCEEEEEecCCCCeecceEEEEECCCCEE
Confidence            01111111111 12332 3678888887554     378899887653

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.02  E-value=0.55  Score=36.35  Aligned_cols=54  Identities=7%  Similarity=0.072  Sum_probs=38.5

Q ss_pred             CCcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeee--------eeeeceEEEEEecc
Q 023822           34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN--------SKKYGVDLVCFTSH   87 (276)
Q Consensus        34 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--------~~~~~v~~~~~~~~   87 (276)
                      -..-++|+|.|++++|++--..|.|++++..+++......        ........++++|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            3456799999999988876557999999877765432221        11346788999985

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.01  E-value=0.31  Score=33.38  Aligned_cols=148  Identities=14%  Similarity=0.219  Sum_probs=80.5

Q ss_pred             eEEEEEeccCCeEE-EeccCCCCCceEEEEccCCceee--eecc-------cCcceEEEEec-cCCCEEEEeeC-CCeEE
Q 023822           79 VDLVCFTSHPTTVI-YSSKNGWDESLRLLSLHDNKYLR--YFKG-------HHDRVVSLSLC-SSKDCFISGSL-DRTVL  146 (276)
Q Consensus        79 v~~~~~~~~~~~l~-~~~~~~~d~~i~~~d~~~~~~~~--~~~~-------~~~~i~~~~~~-~~~~~l~~~~~-d~~i~  146 (276)
                      +.-+...-+++.++ +++.   .....+|-++.++...  .+.+       ..+.|..+.+- +...-|+++.. .|.++
T Consensus       104 vRI~S~~yddk~vvF~Gas---ed~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lr  180 (313)
T d2hu7a1         104 MRILSGVDTGEAVVFTGAT---EDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR  180 (313)
T ss_dssp             BEEEEEEECSSCEEEEEEC---SSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEE
T ss_pred             EEEEEeeecCceEEEeccc---CCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEE
Confidence            34444444555544 4554   7788888888876432  2221       12233444332 23233555555 67777


Q ss_pred             EEeccCceeeeeEeecCCCeeEecCCCcEEEEee----CCeEEEEecccCCCCCeeeeeecC------CCCCceEEEECC
Q 023822          147 LWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF----GGYIRMFDARKYEKGPFDIFSVGG------DISDANVVKFSN  216 (276)
Q Consensus       147 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----d~~i~~~d~~~~~~~~~~~~~~~~------~~~~i~~~~~~~  216 (276)
                      +++...+...         ...+.+..++ ++..    +....-+|++.++   .....++.      ....|.-+-+.|
T Consensus       181 i~tpkeGS~~---------~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~---yerve~P~kd~~sy~p~~I~~~~Y~P  247 (313)
T d2hu7a1         181 VFDSGEGSFS---------SASISPGMKV-TAGLETAREARLVTVDPRDGS---VEDLELPSKDFSSYRPTAITWLGYLP  247 (313)
T ss_dssp             EECCSSEEEE---------EEEECTTSCE-EEEEEESSCEEEEEECTTTCC---EEECCCSSCHHHHHCCSEEEEEEECT
T ss_pred             EecCCCCccc---------ceeEccCcee-eeccCCCCceEEEEEecccCc---eeeeecCcccceeecceEEEeeeeCC
Confidence            7776655432         3344555555 3333    2233345666533   12222221      122445566999


Q ss_pred             CCcEEEEeecCCcEEEEECCCCcEEEEe
Q 023822          217 DGRLMLLTTMEGHIHVLDSFRGTLLSTY  244 (276)
Q Consensus       217 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~  244 (276)
                      ++++++.+-.||.=++|.  +|+.+...
T Consensus       248 dd~L~iiakrdG~s~lF~--nGk~in~p  273 (313)
T d2hu7a1         248 DGRLAVVARREGRSAVFI--DGERVEAP  273 (313)
T ss_dssp             TSCEEEEEEETTEEEEEE--TTEEECCC
T ss_pred             CCcEEEEEecCCchheee--cceEecCC
Confidence            999989999999999997  56655443

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=94.87  E-value=0.34  Score=33.16  Aligned_cols=216  Identities=14%  Similarity=0.129  Sum_probs=104.4

Q ss_pred             CCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccC--CeEEEeccC--C-CCCceEEEEccCCceeeeecc
Q 023822           45 SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP--TTVIYSSKN--G-WDESLRLLSLHDNKYLRYFKG  119 (276)
Q Consensus        45 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~~--~-~d~~i~~~d~~~~~~~~~~~~  119 (276)
                      +.++|+++...|.+.++-+..++.+..-+.   +|.... .|..  .++..+-.-  | -...|.+-++........+..
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLtke---PI~~~~-~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~s  100 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLNRE---PINSVL-DPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEA  100 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECCSS---CCSEEC-EECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTT
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEecc---cccCcC-CCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecC
Confidence            445778887889999998877765443222   222111 1111  112211100  0 022344444432222233332


Q ss_pred             cC-cceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEee---CCe--EEEEecccCC
Q 023822          120 HH-DRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF---GGY--IRMFDARKYE  193 (276)
Q Consensus       120 ~~-~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---d~~--i~~~d~~~~~  193 (276)
                      .. -.|.+++.. +.+..++|+......+|-++.++..+.....+.. ..-+-.+.++++..   .+.  ..+-|+.++.
T Consensus       101 pk~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFs-FVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~  178 (313)
T d2hu7a1         101 VKPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFG-FVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG  178 (313)
T ss_dssp             SCSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCE-EEEEEETTEEEEEEEEETTEEEEEEEETTTEE
T ss_pred             CceEEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcc-eEEeccCCeEEEEeeecCCcceEEEEecccCC
Confidence            22 456666653 4457778888788899999888765544333221 11122233333322   122  2222332222


Q ss_pred             CCCeeeeeecCCCCCceEEEECCCCcEEEEeec---CCcEEEEECCCCcEEEEeecCC-----CCCCceEEEEECCCCcE
Q 023822          194 KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM---EGHIHVLDSFRGTLLSTYNVKP-----VSRNSTLEASFSPEGMF  265 (276)
Q Consensus       194 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~g~~  265 (276)
                           +..+....+.++.....+..+. +++-+   .....-+|+++++.-. +....     -..-.|+-+-+.|++++
T Consensus       179 -----lri~tpkeGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yer-ve~P~kd~~sy~p~~I~~~~Y~Pdd~L  251 (313)
T d2hu7a1         179 -----LRVFDSGEGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVED-LELPSKDFSSYRPTAITWLGYLPDGRL  251 (313)
T ss_dssp             -----EEEECCSSEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEE-CCCSSCHHHHHCCSEEEEEEECTTSCE
T ss_pred             -----EEEecCCCCcccceeEccCcee-eeccCCCCceEEEEEecccCceee-eecCcccceeecceEEEeeeeCCCCcE
Confidence                 2222233445666777777664 43321   1222245877665432 21100     01234666678999999


Q ss_pred             EEEecCCC
Q 023822          266 VISGRVSP  273 (276)
Q Consensus       266 l~~~~~dg  273 (276)
                      ++.+-.||
T Consensus       252 ~iiakrdG  259 (313)
T d2hu7a1         252 AVVARREG  259 (313)
T ss_dssp             EEEEEETT
T ss_pred             EEEEecCC
Confidence            88776665

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.96  E-value=1.2  Score=35.78  Aligned_cols=223  Identities=15%  Similarity=0.099  Sum_probs=120.7

Q ss_pred             ehHHHhhccccceeeccCCCcEEEEEEcC---CCCEEEEeecCCeEEEEEc-cCCeeeeeeeeeee----c-------eE
Q 023822           16 LSEEILQSMEVGMSFRDYNGRISSMDFHK---SSSYLVTASDDESIRLYDV-TAATCLKTINSKKY----G-------VD   80 (276)
Q Consensus        16 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~~~~~d~~i~iwd~-~~~~~~~~~~~~~~----~-------v~   80 (276)
                      ++.+...++++.-.++-...  ..+.-.|   ++.++++++.++.+...|. ++|+.+-++.....    .       -+
T Consensus        32 I~~~Nv~~L~~aW~~~~~~~--~~~~~tPiv~~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~R  109 (596)
T d1w6sa_          32 INKGNVKQLRPAWTFSTGLL--NGHEGAPLVVDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNR  109 (596)
T ss_dssp             SCTTTGGGEEEEEEEECSCC--SCCCSCCEEETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCC
T ss_pred             cCHhHhhhceEEEEEECCCC--CCceeCCEEECCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccc
Confidence            45555566666655532110  0111122   4544455555677877886 57888776642211    0       13


Q ss_pred             EEEEecc----CCeEEEeccCCCCCceEEEEccCCceeeeecccCcce-EEEEecc--CCCEEEEeeC------CCeEEE
Q 023822           81 LVCFTSH----PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRV-VSLSLCS--SKDCFISGSL------DRTVLL  147 (276)
Q Consensus        81 ~~~~~~~----~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~i-~~~~~~~--~~~~l~~~~~------d~~i~i  147 (276)
                      .+++.++    ...++.+..   |+.|.-.|.++++.+..+....... ..+.-.|  -+..++.+..      .|.|+-
T Consensus       110 Gv~~~~~~~~~~~~v~~~t~---dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A  186 (596)
T d1w6sa_         110 GLAYWPGDGKTPALILKTQL---DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTA  186 (596)
T ss_dssp             CCEEECCCSSSCCEEEEECT---TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEE
T ss_pred             eeEEecCCCCCceEEEEEeC---CCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEE
Confidence            3455433    235777776   9999999999999888764211100 0111111  1334555543      488999


Q ss_pred             EeccCceeeeeEeecC----------------------------------------CCeeEecCCCcEEEEee-C-----
Q 023822          148 WDQRAEKCQGLLRVQG----------------------------------------RPAAAYDDQGLVFAVAF-G-----  181 (276)
Q Consensus       148 wd~~~~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~l~~~~-d-----  181 (276)
                      +|.++++.+-.++..+                                        -..+++++...++..+. +     
T Consensus       187 ~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~  266 (596)
T d1w6sa_         187 YDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWN  266 (596)
T ss_dssp             EETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSC
T ss_pred             EECCCCcEEEEeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccccccccc
Confidence            9999998876553110                                        01335555555544443 1     


Q ss_pred             -----------CeEEEEecccCCCCCeeeeeecCCC-------CCceEEEE-CCCC---cEEEEeecCCcEEEEECCCCc
Q 023822          182 -----------GYIRMFDARKYEKGPFDIFSVGGDI-------SDANVVKF-SNDG---RLMLLTTMEGHIHVLDSFRGT  239 (276)
Q Consensus       182 -----------~~i~~~d~~~~~~~~~~~~~~~~~~-------~~i~~~~~-~~~~---~~l~~~~~dg~i~i~d~~~~~  239 (276)
                                 ..|.-.|+++++..-  .+....|.       ..+.-+.. ..+|   +.++....+|.+.++|..+|+
T Consensus       267 ~~~r~g~n~ys~sivAlD~~TG~~~W--~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~  344 (596)
T d1w6sa_         267 ETMRPGDNKWTMTIFGRDADTGEAKF--GYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA  344 (596)
T ss_dssp             GGGSCSCCTTSSEEEEEETTTCCEEE--EEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred             cccccccccccccccccccccccccc--cccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCc
Confidence                       236666777655311  11111121       11111211 2344   467788899999999999999


Q ss_pred             EEEEee
Q 023822          240 LLSTYN  245 (276)
Q Consensus       240 ~~~~~~  245 (276)
                      ++....
T Consensus       345 ~i~~~~  350 (596)
T d1w6sa_         345 LVSANK  350 (596)
T ss_dssp             EEEEEE
T ss_pred             eeeecc
Confidence            886543

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=90.20  E-value=2.1  Score=30.14  Aligned_cols=182  Identities=9%  Similarity=0.016  Sum_probs=81.3

Q ss_pred             CcEEEEEEcCCCCEEEEeecCCeEEEEEccCCeeeeeeeeeeeceEEEEEeccCCeEEEeccCCCCCceEEEEccCCcee
Q 023822           35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL  114 (276)
Q Consensus        35 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~  114 (276)
                      ..|..++-... ..++.  .||.|..|-......+-.-......+..+..  ...+.+. -.   |+.+..|........
T Consensus        26 ~~i~~va~G~~-h~~al--~dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~--G~~~~~a-l~---dg~v~~wG~~~~gq~   96 (273)
T d1jtdb_          26 SGVDAIAGGYF-HGLAL--KGGKVLGWGANLNGQLTMPAATQSGVDAIAA--GNYHSLA-LK---DGEVIAWGGNEDGQT   96 (273)
T ss_dssp             SSEEEEEECSS-EEEEE--ETTEEEEEECCTTSTTSCCGGGGSCCCEEEE--CSSEEEE-EE---TTEEEEEECCTTSTT
T ss_pred             CCcEEEEccCC-EEEEE--ECCEEEEEeCCCCCceeeeecccccceEEec--CCCceee-ee---eeeeeccCCCcceee
Confidence            45777766322 23332  3899999976543222211122223444433  2233322 23   788888875432211


Q ss_pred             eeecccCcceEEEEeccCCCEEEEeeCCCeEEEEeccCceeeeeEeecCCCeeEecCCCcEEEEeeCCeEEEEecccCCC
Q 023822          115 RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEK  194 (276)
Q Consensus       115 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~  194 (276)
                      .........+..++.....  .+. -.|+.+..|...........................++...++.++.|-......
T Consensus        97 ~~~~~~~~~~~~i~~~~~~--~~~-~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~G~~~~g~  173 (273)
T d1jtdb_          97 TVPAEARSGVDAIAAGAWA--SYA-LKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGDNYFGQ  173 (273)
T ss_dssp             CCCGGGGSSCCEEEEETTE--EEE-EETTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEEETTEEEEEECCTTST
T ss_pred             ccccccccceeEEeeeccc--ccc-cccccceecccCCCCceeeeccCCceEEEEeccceeeeeecccceeEeecccCCc
Confidence            1111122334444433222  222 2478888887443222111111111112222233344444578888887654332


Q ss_pred             CCeeeeeecCCCCCceEEEECCCCcEEEEeecCCcEEEEEC
Q 023822          195 GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDS  235 (276)
Q Consensus       195 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  235 (276)
                      ...    .......|..|+..... .++ -. ||.|+-|=.
T Consensus       174 ~~~----~~~~~~~v~~Is~G~~h-~~~-l~-dG~v~~WG~  207 (273)
T d1jtdb_         174 TTV----PAEAQSGVDDVAGGIFH-SLA-LK-DGKVIAWGD  207 (273)
T ss_dssp             TSC----CGGGSSSEEEEEECSSE-EEE-EE-TTEEEEEEC
T ss_pred             ccc----cccccCCccceecccee-eEE-Ee-cCcEEEcCC
Confidence            111    11123356666654332 222 23 788888853

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=89.77  E-value=1.9  Score=28.81  Aligned_cols=138  Identities=8%  Similarity=0.013  Sum_probs=75.3

Q ss_pred             ceEEEEEeccCCeEEEeccCCCCCceEEEEccCCceeeee-------cccCcceEEEEeccCCCEEEEeeCCCeEEEEec
Q 023822           78 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF-------KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQ  150 (276)
Q Consensus        78 ~v~~~~~~~~~~~l~~~~~~~~d~~i~~~d~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~  150 (276)
                      .+.-++|+|+++..++-     .+.++.=.+.+.....-+       .+-=+....+-|+|.|-+.++.  ++.++-=..
T Consensus        41 n~~~i~fsP~G~LyaVr-----~~~lY~Gp~~s~~nq~wf~~atrIG~ggWn~FkflffdP~G~LyaVt--~~~LYr~~p  113 (235)
T d1tl2a_          41 NFKFLFLSPGGELYGVL-----NDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAVS--KDKLYKASP  113 (235)
T ss_dssp             TCSEEEECTTSCEEEEE-----TTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEEE--TTEEEEESC
T ss_pred             ceeEEEECCCCcEEEEE-----CCeEEECCCCCcchHHHHHhhhhcccCcccceEEEEECCCceEEEec--CcceecCCc
Confidence            46779999999988776     444444333332211101       1112345668889998655554  354443222


Q ss_pred             cCceeeee------E---eecCCCeeEecCCCcEEEEeeCCeEEEEecccCCCCCee---eeeecCCCCCceEEEECCCC
Q 023822          151 RAEKCQGL------L---RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFD---IFSVGGDISDANVVKFSNDG  218 (276)
Q Consensus       151 ~~~~~~~~------~---~~~~~~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~  218 (276)
                      .+.++..-      +   .-.....+.|+|+|.+.++..+ .++-+...........   ...-..+-....-+.|+|+|
T Consensus       114 Ptn~~q~W~g~a~~vG~~gw~df~~lFFdP~G~LYaV~~~-~l~k~~pP~~~~d~WL~~st~igr~~w~~~~fi~Fs~dG  192 (235)
T d1tl2a_         114 PQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVHGQ-QFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG  192 (235)
T ss_dssp             CCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEETT-EEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred             CcccchhhhhhhhhhccCCcCceeEEEECCCceEEEEECC-cEEEcCCCCCCCchhhhhhhhhccCcccCceEEEECCCC
Confidence            22222111      1   1122347899999999999555 5666665443321100   11112444456789999999


Q ss_pred             cEEEE
Q 023822          219 RLMLL  223 (276)
Q Consensus       219 ~~l~~  223 (276)
                      .+..+
T Consensus       193 ~L~~v  197 (235)
T d1tl2a_         193 TLFGV  197 (235)
T ss_dssp             CEEEE
T ss_pred             cEEEE
Confidence            86665