Citrus Sinensis ID: 023864
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 276 | 2.2.26 [Sep-21-2011] | |||||||
| Q84WV9 | 320 | Glutaminyl-peptide cyclot | yes | no | 0.858 | 0.740 | 0.564 | 2e-70 |
| >sp|Q84WV9|QPCT_ARATH Glutaminyl-peptide cyclotransferase OS=Arabidopsis thaliana GN=QCT PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 265 bits (678), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 149/264 (56%), Positives = 174/264 (65%), Gaps = 27/264 (10%)
Query: 1 MGSRSLKKKPSKRSISQSDRPAPSPSPSPSSSSSSSSSCMASNHFSRFRHYNKGIPAVML 60
M +RS K+ +KRS+ QS PA S + S S M IP +L
Sbjct: 1 MATRSPYKRQTKRSMIQS-LPASSSASSRRRFISRKRFAMM-------------IPLALL 46
Query: 61 ---IFFFLCGFVLLCISSNMWIRFPG--VDQSPSIYTIQVVNEFPHDPRAFTQGLLYAEN 115
+F F F N W + G +D S I I+VV EFPHDP AFTQGLLYA N
Sbjct: 47 SGAVFLFFMPF-------NSWGQSSGSSLDLSHRINEIEVVAEFPHDPDAFTQGLLYAGN 99
Query: 116 DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIY 175
DTLFESTGLYG+SSVR+V L TGKVE + +M+ +YFGEGLTLLGE+LFQV WL TGF Y
Sbjct: 100 DTLFESTGLYGKSSVRKVDLRTGKVEILEKMDNTYFGEGLTLLGERLFQVAWLTNTGFTY 159
Query: 176 DQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREV 235
D NL+K++ F H MKDGWGLATDGK LFGSDG+S LY++DPQT+KV K IVRY GREV
Sbjct: 160 DLRNLSKVKPFKHHMKDGWGLATDGKALFGSDGTSTLYRMDPQTMKVTDKHIVRYNGREV 219
Query: 236 RNLNELEFIKGEVWANVWQVWPCI 259
R LNELE+I EVWANVWQ CI
Sbjct: 220 RYLNELEYINNEVWANVWQS-DCI 242
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Converts glutamine and N-terminal glutamyl residues in peptides to 5-oxoproline and 5-oxoproline residues. Not involved in the major pathway for 5-oxoproline production. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 3EC: .EC: 2EC: .EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 276 | ||||||
| 255545178 | 303 | catalytic, putative [Ricinus communis] g | 0.869 | 0.792 | 0.590 | 2e-80 | |
| 449445993 | 324 | PREDICTED: glutaminyl-peptide cyclotrans | 0.862 | 0.734 | 0.599 | 6e-78 | |
| 224079742 | 264 | predicted protein [Populus trichocarpa] | 0.717 | 0.75 | 0.684 | 3e-73 | |
| 224135267 | 307 | predicted protein [Populus trichocarpa] | 0.75 | 0.674 | 0.669 | 1e-70 | |
| 227202640 | 253 | AT4G25720 [Arabidopsis thaliana] | 0.851 | 0.928 | 0.567 | 2e-69 | |
| 302143792 | 315 | unnamed protein product [Vitis vinifera] | 0.626 | 0.549 | 0.712 | 3e-69 | |
| 388494830 | 325 | unknown [Medicago truncatula] | 0.855 | 0.726 | 0.546 | 3e-69 | |
| 18416607 | 320 | glutaminyl-peptide cyclotransferase [Ara | 0.858 | 0.740 | 0.564 | 1e-68 | |
| 21536884 | 320 | glutamine cyclotransferase precursor-lik | 0.858 | 0.740 | 0.564 | 1e-68 | |
| 79325261 | 298 | glutaminyl-peptide cyclotransferase [Ara | 0.858 | 0.795 | 0.564 | 2e-68 |
| >gi|255545178|ref|XP_002513650.1| catalytic, putative [Ricinus communis] gi|223547558|gb|EEF49053.1| catalytic, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 154/261 (59%), Positives = 188/261 (72%), Gaps = 21/261 (8%)
Query: 1 MGSRSLKKKPS-KRSISQSDRPAPSPSPSPSSSSSSSSSCMASNHFSRFRHYNKGIPAVM 59
MG++S+ K+ + KRS ++D PSPS + +HF+ + +P ++
Sbjct: 1 MGTKSVNKRSNNKRSTPKADIAMPSPSHT--------------SHFTL-----RKVPLLV 41
Query: 60 LIFFFLCGFVLLCISSNMWIRFPGVDQSPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLF 119
L LL IS VDQS IY IQVVNEFPHDP AFTQGLLYA NDTLF
Sbjct: 42 LFVMIFGIIALLGISPITLSSLGSVDQSSKIYAIQVVNEFPHDPSAFTQGLLYAGNDTLF 101
Query: 120 ESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNN 179
ESTGLYG SSVRRV L++GKVE + M+ SYFGEGLTLLGE+LFQVTWL+KTGFIYD+N+
Sbjct: 102 ESTGLYGESSVRRVDLQSGKVEVLQNMDASYFGEGLTLLGERLFQVTWLRKTGFIYDRND 161
Query: 180 LNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLN 239
L+K++EFTHQM DGWGLATDGKVLFGSDG+S LYQ+D QTLKV +K+IV+Y +EVR LN
Sbjct: 162 LSKIKEFTHQMNDGWGLATDGKVLFGSDGTSTLYQLDAQTLKVRKKNIVKYDNQEVRYLN 221
Query: 240 ELEFIKGEVWANVWQVWPCIP 260
ELEF+ GE+WAN+WQ CI
Sbjct: 222 ELEFVNGEIWANIWQT-DCIA 241
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449445993|ref|XP_004140756.1| PREDICTED: glutaminyl-peptide cyclotransferase-like [Cucumis sativus] gi|449485499|ref|XP_004157189.1| PREDICTED: glutaminyl-peptide cyclotransferase-like [Cucumis sativus] | Back alignment and taxonomy information |
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Score = 296 bits (758), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 157/262 (59%), Positives = 188/262 (71%), Gaps = 24/262 (9%)
Query: 1 MGSRSLKKKPSKRSISQSDRPAPSPSPSPSSSSSSSSSCMASNHFSRFRHYNKGIPAVML 60
M + SLK++ SKRS S+ PS PS S + A +L
Sbjct: 1 MAAGSLKRRQSKRSNSKPSIVMPS---RPSHQSFLAHRTTA-----------------LL 40
Query: 61 IFFFLCGFVLLC--ISSNMWIRFPGVD-QSPSIYTIQVVNEFPHDPRAFTQGLLYAENDT 117
+F L F +L IS N+ R P + QSP IY+I+VVNEFPHDPRAFTQGL+Y ENDT
Sbjct: 41 LFISLIFFAVLVSGISLNVLRRSPKYEVQSPMIYSIEVVNEFPHDPRAFTQGLVYVENDT 100
Query: 118 LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQ 177
LFESTGLYG+SSVR+VAL TGK E +++M+ SYFGEGLTLLGE+LFQVTWL+KTGFIYDQ
Sbjct: 101 LFESTGLYGQSSVRKVALSTGKTEVLHKMDDSYFGEGLTLLGERLFQVTWLKKTGFIYDQ 160
Query: 178 NNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRN 237
+NLN+++EFTHQM DGWGLATDGK+L+GSDG+S LYQIDP+T V K +V Y+G EV N
Sbjct: 161 DNLNEVKEFTHQMNDGWGLATDGKILYGSDGTSTLYQIDPETFIVTNKWVVSYQGDEVHN 220
Query: 238 LNELEFIKGEVWANVWQVWPCI 259
LNELEFI GEVWANVW CI
Sbjct: 221 LNELEFINGEVWANVWMT-DCI 241
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224079742|ref|XP_002305935.1| predicted protein [Populus trichocarpa] gi|222848899|gb|EEE86446.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 281 bits (718), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 139/203 (68%), Positives = 161/203 (79%), Gaps = 5/203 (2%)
Query: 58 VMLIFFFLCGFVLLCISSNMWIRFPGVDQSPSIYTIQVVNEFPHDPRAFTQGLLYAENDT 117
V L+ F F LL ISSN+ GV P +Y++QV+NEFPHDP AFTQGLLYA NDT
Sbjct: 7 VSLVMIFGVIF-LLGISSNI---LSGVASVPKLYSVQVINEFPHDPSAFTQGLLYAGNDT 62
Query: 118 LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQ 177
L+ESTGLYG+SSVRRVAL TGKVEA+ +M+ SYFGEGLT ++LFQVTWL KTGFIYD
Sbjct: 63 LYESTGLYGKSSVRRVALHTGKVEALQKMDDSYFGEGLTYFEQRLFQVTWLTKTGFIYDP 122
Query: 178 NNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRN 237
NNL+K+ +FTH M+DGWGLAT+GKVLFGSDG+S LYQ+DPQTLKVI K IVRY G EV
Sbjct: 123 NNLSKIGKFTHGMEDGWGLATNGKVLFGSDGTSALYQLDPQTLKVISKQIVRYNGHEVHY 182
Query: 238 LNELEFIKGEVWANVWQVWPCIP 260
LNELEF+ E+WANVWQ CI
Sbjct: 183 LNELEFVNDEIWANVWQT-DCIA 204
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224135267|ref|XP_002327606.1| predicted protein [Populus trichocarpa] gi|222836160|gb|EEE74581.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 272 bits (696), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 142/212 (66%), Positives = 166/212 (78%), Gaps = 5/212 (2%)
Query: 40 MASNHFSRFRHYNKGIPAVMLIFFFLCGFVLLCISSNMWIRFPGVDQSPSIYTIQVVNEF 99
M+S+ +RFR Y K V L+ F + LL +SS+ IR GV P +Y IQV NEF
Sbjct: 15 MSSSASTRFR-YKKVSVFVSLVMIFGVVY-LLGVSSS--IR-SGVAFVPKLYAIQVFNEF 69
Query: 100 PHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG 159
PHDP AFTQGLLYA N TL+ESTGLYG+SSVRRVAL TGKVE + +M+GSYFGEGLTLL
Sbjct: 70 PHDPSAFTQGLLYAGNGTLYESTGLYGKSSVRRVALNTGKVEVLQEMDGSYFGEGLTLLE 129
Query: 160 EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQT 219
+ LFQVTW KTGFIYD+N+L+K+ EFTH+M+DGWGLAT+GKVLFGSDG+S LYQ+DPQT
Sbjct: 130 QSLFQVTWSTKTGFIYDRNDLSKIREFTHEMEDGWGLATNGKVLFGSDGTSALYQLDPQT 189
Query: 220 LKVIRKDIVRYKGREVRNLNELEFIKGEVWAN 251
LKVI K IVRY G EV LNELEF+ EVWAN
Sbjct: 190 LKVIGKQIVRYNGHEVHYLNELEFVNDEVWAN 221
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|227202640|dbj|BAH56793.1| AT4G25720 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 148/261 (56%), Positives = 174/261 (66%), Gaps = 26/261 (9%)
Query: 1 MGSRSLKKKPSKRSISQSDRPAPSPSPSPSSSSSSSSSCMASNHFSRFRHYNKGIPAVML 60
M +RS K+ +KRS+ QS PA S + S S M IP +L
Sbjct: 1 MATRSPYKRQTKRSMIQS-LPASSSASSRRRFISRKRFAMM-------------IPLALL 46
Query: 61 ---IFFFLCGFVLLCISSNMWIRFPG--VDQSPSIYTIQVVNEFPHDPRAFTQGLLYAEN 115
+F F F N W + G +D S I I+VV EFPHDP AFTQGLLYA N
Sbjct: 47 SGAVFLFFMPF-------NSWGQSSGSSLDLSHRINEIEVVAEFPHDPDAFTQGLLYAGN 99
Query: 116 DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIY 175
DTLFESTGLYG+SSVR+V L TGKVE + +M+ +YFGEGLTLLGE+LFQV WL TGF Y
Sbjct: 100 DTLFESTGLYGKSSVRKVDLRTGKVEILEKMDNTYFGEGLTLLGERLFQVAWLTNTGFTY 159
Query: 176 DQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREV 235
D NL+K++ F H MKDGWGLATDGK LFGSDG+S LY++DPQT+KV K IVRY GREV
Sbjct: 160 DLRNLSKVKPFKHHMKDGWGLATDGKALFGSDGTSTLYRMDPQTMKVTDKHIVRYNGREV 219
Query: 236 RNLNELEFIKGEVWANVWQVW 256
R LNELE+I EVWANVWQV+
Sbjct: 220 RYLNELEYINNEVWANVWQVF 240
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302143792|emb|CBI22653.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 268 bits (684), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 124/174 (71%), Positives = 150/174 (86%), Gaps = 1/174 (0%)
Query: 86 QSPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQ 145
S IY+++VV EF HDP AFTQGL+Y N+TLFESTGLY RSSVR+VAL TGKVEA+ +
Sbjct: 59 DSTQIYSVEVVKEFHHDPYAFTQGLVYGGNETLFESTGLYQRSSVRKVALHTGKVEALQK 118
Query: 146 MEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFG 205
M+ SYFGEGLTLLGE+LFQVTWL+KTGFIYD+N+L+K E FT+ M+DGWGLAT+G+VLFG
Sbjct: 119 MDDSYFGEGLTLLGERLFQVTWLKKTGFIYDRNDLSKFETFTNHMRDGWGLATNGEVLFG 178
Query: 206 SDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQVWPCI 259
SDG+S LYQIDPQ++KVI + +V+YKG EV NLNELEF+ GE+WANVWQ CI
Sbjct: 179 SDGTSTLYQIDPQSMKVIGEHVVKYKGHEVHNLNELEFVDGEIWANVWQT-DCI 231
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388494830|gb|AFK35481.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 141/258 (54%), Positives = 172/258 (66%), Gaps = 22/258 (8%)
Query: 3 SRSLKKKPSKRSISQSDRPAPS-PSPSPSSSSSSSSSCMASNHFSRFRHYNKGIPAVMLI 61
+RSLKK+P + + P PS +PSP + R + + A++ +
Sbjct: 4 TRSLKKRPRESRL----HPNPSMATPSPPTRR-------------RQPQHLATVSAILAV 46
Query: 62 FFFLCGFVLLCISSNMWIRFPGVDQSPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFES 121
+ F LL +SSN W F QS SI TI VVN FPHDP+AFTQGLLYA ND+LFES
Sbjct: 47 LLVISVFCLLLVSSNTWRAF---QQSVSIDTITVVNVFPHDPQAFTQGLLYAGNDSLFES 103
Query: 122 TGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLN 181
TG+YG+S+VR+VAL TGKVE + +M+ FGEGLTLLG +L QV WLQ GF YD NL+
Sbjct: 104 TGIYGKSTVRKVALHTGKVEKLQKMDNLLFGEGLTLLGNRLIQVIWLQTKGFTYDPKNLS 163
Query: 182 KLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNEL 241
+L F H MKDGWGLATDGKVLFGSDGSS LY+IDPQT K I K ++ YKG +V NLNEL
Sbjct: 164 ELGTFNHDMKDGWGLATDGKVLFGSDGSSTLYKIDPQTFKAISKQVIYYKGHQVHNLNEL 223
Query: 242 EFIKGEVWANVWQVWPCI 259
E+I EVWANV+ CI
Sbjct: 224 EYINDEVWANVFTT-DCI 240
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Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18416607|ref|NP_567727.1| glutaminyl-peptide cyclotransferase [Arabidopsis thaliana] gi|75243462|sp|Q84WV9.1|QPCT_ARATH RecName: Full=Glutaminyl-peptide cyclotransferase; AltName: Full=Glutaminyl cyclase gi|25054886|gb|AAN71928.1| putative glutamine cyclotransferase precursor [Arabidopsis thaliana] gi|222423403|dbj|BAH19673.1| AT4G25720 [Arabidopsis thaliana] gi|332659703|gb|AEE85103.1| glutaminyl-peptide cyclotransferase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 149/264 (56%), Positives = 174/264 (65%), Gaps = 27/264 (10%)
Query: 1 MGSRSLKKKPSKRSISQSDRPAPSPSPSPSSSSSSSSSCMASNHFSRFRHYNKGIPAVML 60
M +RS K+ +KRS+ QS PA S + S S M IP +L
Sbjct: 1 MATRSPYKRQTKRSMIQS-LPASSSASSRRRFISRKRFAMM-------------IPLALL 46
Query: 61 ---IFFFLCGFVLLCISSNMWIRFPG--VDQSPSIYTIQVVNEFPHDPRAFTQGLLYAEN 115
+F F F N W + G +D S I I+VV EFPHDP AFTQGLLYA N
Sbjct: 47 SGAVFLFFMPF-------NSWGQSSGSSLDLSHRINEIEVVAEFPHDPDAFTQGLLYAGN 99
Query: 116 DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIY 175
DTLFESTGLYG+SSVR+V L TGKVE + +M+ +YFGEGLTLLGE+LFQV WL TGF Y
Sbjct: 100 DTLFESTGLYGKSSVRKVDLRTGKVEILEKMDNTYFGEGLTLLGERLFQVAWLTNTGFTY 159
Query: 176 DQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREV 235
D NL+K++ F H MKDGWGLATDGK LFGSDG+S LY++DPQT+KV K IVRY GREV
Sbjct: 160 DLRNLSKVKPFKHHMKDGWGLATDGKALFGSDGTSTLYRMDPQTMKVTDKHIVRYNGREV 219
Query: 236 RNLNELEFIKGEVWANVWQVWPCI 259
R LNELE+I EVWANVWQ CI
Sbjct: 220 RYLNELEYINNEVWANVWQS-DCI 242
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21536884|gb|AAM61216.1| glutamine cyclotransferase precursor-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 149/264 (56%), Positives = 174/264 (65%), Gaps = 27/264 (10%)
Query: 1 MGSRSLKKKPSKRSISQSDRPAPSPSPSPSSSSSSSSSCMASNHFSRFRHYNKGIPAVML 60
M +RS K+ +KRS+ QS PA S + S S M IP +L
Sbjct: 1 MATRSPYKRQTKRSMIQS-LPASSSASSRRRFISRKRFAMM-------------IPLALL 46
Query: 61 ---IFFFLCGFVLLCISSNMWIRFPG--VDQSPSIYTIQVVNEFPHDPRAFTQGLLYAEN 115
+F F F N W + G +D S I I+VV EFPHDP AFTQGLLYA N
Sbjct: 47 SGAVFLFFMPF-------NSWGQSSGSSLDLSHRINEIEVVAEFPHDPDAFTQGLLYAGN 99
Query: 116 DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIY 175
DTLFESTGLYG+SSVR+V L TGKVE + +M+ +YFGEGLTLLGE+LFQV WL TGF Y
Sbjct: 100 DTLFESTGLYGKSSVRKVDLRTGKVEILEKMDNTYFGEGLTLLGERLFQVAWLTNTGFTY 159
Query: 176 DQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREV 235
D NL+K++ F H MKDGWGLATDGK LFGSDG+S LY++DPQT+KV K IVRY GREV
Sbjct: 160 DLRNLSKVKPFKHHMKDGWGLATDGKALFGSDGTSTLYRMDPQTMKVTDKHIVRYNGREV 219
Query: 236 RNLNELEFIKGEVWANVWQVWPCI 259
R LNELE+I EVWANVWQ CI
Sbjct: 220 RYLNELEYINNEVWANVWQS-DCI 242
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|79325261|ref|NP_001031716.1| glutaminyl-peptide cyclotransferase [Arabidopsis thaliana] gi|332659704|gb|AEE85104.1| glutaminyl-peptide cyclotransferase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 149/264 (56%), Positives = 174/264 (65%), Gaps = 27/264 (10%)
Query: 1 MGSRSLKKKPSKRSISQSDRPAPSPSPSPSSSSSSSSSCMASNHFSRFRHYNKGIPAVML 60
M +RS K+ +KRS+ QS PA S + S S M IP +L
Sbjct: 1 MATRSPYKRQTKRSMIQS-LPASSSASSRRRFISRKRFAMM-------------IPLALL 46
Query: 61 ---IFFFLCGFVLLCISSNMWIRFPG--VDQSPSIYTIQVVNEFPHDPRAFTQGLLYAEN 115
+F F F N W + G +D S I I+VV EFPHDP AFTQGLLYA N
Sbjct: 47 SGAVFLFFMPF-------NSWGQSSGSSLDLSHRINEIEVVAEFPHDPDAFTQGLLYAGN 99
Query: 116 DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIY 175
DTLFESTGLYG+SSVR+V L TGKVE + +M+ +YFGEGLTLLGE+LFQV WL TGF Y
Sbjct: 100 DTLFESTGLYGKSSVRKVDLRTGKVEILEKMDNTYFGEGLTLLGERLFQVAWLTNTGFTY 159
Query: 176 DQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREV 235
D NL+K++ F H MKDGWGLATDGK LFGSDG+S LY++DPQT+KV K IVRY GREV
Sbjct: 160 DLRNLSKVKPFKHHMKDGWGLATDGKALFGSDGTSTLYRMDPQTMKVTDKHIVRYNGREV 219
Query: 236 RNLNELEFIKGEVWANVWQVWPCI 259
R LNELE+I EVWANVWQ CI
Sbjct: 220 RYLNELEYINNEVWANVWQS-DCI 242
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 276 | ||||||
| TAIR|locus:2131391 | 320 | QC "AT4G25720" [Arabidopsis th | 0.789 | 0.681 | 0.621 | 4.7e-68 | |
| GENEDB_PFALCIPARUM|PF14_0447 | 383 | PF14_0447 "glutaminyl-peptide | 0.347 | 0.250 | 0.361 | 1.4e-13 | |
| UNIPROTKB|Q8IL03 | 383 | PF14_0447 "Glutaminyl-peptide | 0.347 | 0.250 | 0.361 | 1.4e-13 |
| TAIR|locus:2131391 QC "AT4G25720" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 672 (241.6 bits), Expect = 4.7e-68, Sum P(2) = 4.7e-68
Identities = 138/222 (62%), Positives = 162/222 (72%)
Query: 41 ASNHFSRFRHYNKGIPAVMLIFFFLCGFVLLCISS-NMWIRFPG--VDQSPSIYTIQVVN 97
+S+ SR R ++ A+M+ L G V L N W + G +D S I I+VV
Sbjct: 22 SSSASSRRRFISRKRFAMMIPLALLSGAVFLFFMPFNSWGQSSGSSLDLSHRINEIEVVA 81
Query: 98 EFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL 157
EFPHDP AFTQGLLYA NDTLFESTGLYG+SSVR+V L TGKVE + +M+ +YFGEGLTL
Sbjct: 82 EFPHDPDAFTQGLLYAGNDTLFESTGLYGKSSVRKVDLRTGKVEILEKMDNTYFGEGLTL 141
Query: 158 LGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDP 217
LGE+LFQV WL TGF YD NL+K++ F H MKDGWGLATDGK LFGSDG+S LY++DP
Sbjct: 142 LGERLFQVAWLTNTGFTYDLRNLSKVKPFKHHMKDGWGLATDGKALFGSDGTSTLYRMDP 201
Query: 218 QTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQVWPCI 259
QT+KV K IVRY GREVR LNELE+I EVWANVWQ CI
Sbjct: 202 QTMKVTDKHIVRYNGREVRYLNELEYINNEVWANVWQS-DCI 242
|
|
| GENEDB_PFALCIPARUM|PF14_0447 PF14_0447 "glutaminyl-peptide cyclotransferase" [Plasmodium falciparum (taxid:5833)] | Back alignment and assigned GO terms |
|---|
Score = 161 (61.7 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 38/105 (36%), Positives = 59/105 (56%)
Query: 101 HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGE 160
H P FTQGL ++ N+TL ESTGLY S +R L +GK + +E YFGEG TL+ E
Sbjct: 104 HFP--FTQGLFFSNNETLIESTGLYNASYLREFDLLSGKTIRFHNLESKYFGEGTTLVIE 161
Query: 161 K------LFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATD 199
LF +T+ +K +++ + +++ DG+GL ++
Sbjct: 162 PSTFRKFLFVLTYKEKKILVFNYETFELYHTYYNEL-DGYGLTSN 205
|
|
| UNIPROTKB|Q8IL03 PF14_0447 "Glutaminyl-peptide cyclotransferase, putative" [Plasmodium falciparum 3D7 (taxid:36329)] | Back alignment and assigned GO terms |
|---|
Score = 161 (61.7 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 38/105 (36%), Positives = 59/105 (56%)
Query: 101 HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGE 160
H P FTQGL ++ N+TL ESTGLY S +R L +GK + +E YFGEG TL+ E
Sbjct: 104 HFP--FTQGLFFSNNETLIESTGLYNASYLREFDLLSGKTIRFHNLESKYFGEGTTLVIE 161
Query: 161 K------LFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATD 199
LF +T+ +K +++ + +++ DG+GL ++
Sbjct: 162 PSTFRKFLFVLTYKEKKILVFNYETFELYHTYYNEL-DGYGLTSN 205
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q84WV9 | QPCT_ARATH | 2, ., 3, ., 2, ., 5 | 0.5643 | 0.8586 | 0.7406 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.3.2 | LOW CONFIDENCE prediction! |
| 3rd Layer | 2.3.2.5 | 0.914 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 276 | |||
| COG3823 | 262 | COG3823, COG3823, Glutamine cyclotransferase [Post | 4e-52 | |
| pfam05096 | 264 | pfam05096, Glu_cyclase_2, Glutamine cyclotransfera | 5e-49 |
| >gnl|CDD|226344 COG3823, COG3823, Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 170 bits (433), Expect = 4e-52
Identities = 68/162 (41%), Positives = 98/162 (60%), Gaps = 3/162 (1%)
Query: 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG-SYFG 152
+V+ +PHD +FTQGL Y + + ESTGLYG S +R L TG+ ++ + FG
Sbjct: 35 EVIRTYPHDSTSFTQGLEY-LDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFG 93
Query: 153 EGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSML 212
EG+T LG+ +Q+TW + F YD + L +L F+++ +GWGL +D K L SDGS+ L
Sbjct: 94 EGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE-GEGWGLTSDDKNLIMSDGSATL 152
Query: 213 YQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQ 254
DP+T + V G V LNELE++ GE++ANVWQ
Sbjct: 153 QFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQ 194
|
Length = 262 |
| >gnl|CDD|218428 pfam05096, Glu_cyclase_2, Glutamine cyclotransferase | Back alignment and domain information |
|---|
Score = 162 bits (412), Expect = 5e-49
Identities = 61/160 (38%), Positives = 89/160 (55%), Gaps = 1/160 (0%)
Query: 95 VVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEG 154
V+ +PHD AFTQGL Y N + ESTG YG S VR L + FGEG
Sbjct: 35 VLRTYPHDSNAFTQGLEYLNNGHILESTGRYGFSKVRVYDLTQEIFSEKIAFPDTVFGEG 94
Query: 155 LTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQ 214
LT++ + ++ +TW + YD+ N L + ++ +GWGL D K L+ S G++ L +
Sbjct: 95 LTVVEDYVYLLTWKDGVAYKYDKATFNCLGAYPYE-GEGWGLTKDNKCLWMSSGTAFLQK 153
Query: 215 IDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQ 254
DP+T ++ V +G V LNELE++ G ++ANVWQ
Sbjct: 154 RDPKTFALLDTVQVTDEGVPVSMLNELEYVDGYLYANVWQ 193
|
This family of enzymes EC:2.3.2.5 catalyze the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes. Length = 264 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 276 | |||
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 100.0 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 100.0 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.51 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.49 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.4 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.39 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.34 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.29 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.29 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.27 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.26 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 99.24 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.2 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 99.19 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 99.17 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.08 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.07 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.96 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.95 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.92 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 98.92 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.86 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.83 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.72 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.72 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.63 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 98.58 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 98.36 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.34 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 98.32 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.3 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.17 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.16 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.16 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.15 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.1 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.09 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 98.06 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 98.05 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.05 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.04 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 98.01 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.96 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.95 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 97.92 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 97.92 | |
| PTZ00420 | 568 | coronin; Provisional | 97.84 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.84 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 97.83 | |
| PTZ00420 | 568 | coronin; Provisional | 97.82 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 97.81 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 97.77 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.76 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 97.76 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.75 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 97.74 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 97.73 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 97.69 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 97.69 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 97.69 | |
| PTZ00421 | 493 | coronin; Provisional | 97.67 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.63 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 97.56 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 97.56 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 97.53 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.52 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 97.5 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 97.48 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 97.47 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 97.45 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 97.44 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 97.44 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.44 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 97.44 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 97.42 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 97.38 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 97.35 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 97.33 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 97.33 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 97.28 | |
| PTZ00421 | 493 | coronin; Provisional | 97.27 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 97.27 | |
| PLN02153 | 341 | epithiospecifier protein | 97.26 | |
| PLN02153 | 341 | epithiospecifier protein | 97.25 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 97.25 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 97.23 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 97.23 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 97.22 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 97.22 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.2 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 97.19 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 97.11 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.1 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 97.1 | |
| PF02191 | 250 | OLF: Olfactomedin-like domain; InterPro: IPR003112 | 97.05 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.05 | |
| PF02191 | 250 | OLF: Olfactomedin-like domain; InterPro: IPR003112 | 97.04 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 97.02 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.98 | |
| smart00284 | 255 | OLF Olfactomedin-like domains. | 96.97 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 96.97 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.96 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 96.93 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 96.91 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 96.9 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.87 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 96.85 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 96.81 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 96.8 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 96.78 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 96.76 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 96.74 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 96.66 | |
| PLN02193 | 470 | nitrile-specifier protein | 96.63 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 96.59 | |
| smart00284 | 255 | OLF Olfactomedin-like domains. | 96.57 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 96.55 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 96.54 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 96.51 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 96.47 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 96.44 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 96.43 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.42 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.4 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 96.37 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.36 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 96.35 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.32 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 96.24 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 96.14 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 96.08 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.02 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 95.98 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 95.95 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 95.92 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 95.92 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 95.89 | |
| PLN02193 | 470 | nitrile-specifier protein | 95.88 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 95.88 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 95.85 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 95.81 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 95.75 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 95.72 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 95.71 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 95.68 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 95.68 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 95.63 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 95.61 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 95.38 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 95.37 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 95.36 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 95.36 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 95.3 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 95.26 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 95.25 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 95.24 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 95.22 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 95.15 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 95.11 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 95.04 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 95.01 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 95.01 | |
| PF13970 | 333 | DUF4221: Domain of unknown function (DUF4221); PDB | 94.95 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 94.94 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 94.9 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 94.89 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 94.81 | |
| PF14269 | 299 | Arylsulfotran_2: Arylsulfotransferase (ASST) | 94.78 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 94.72 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 94.67 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 94.65 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 94.64 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 94.58 | |
| PF09826 | 521 | Beta_propel: Beta propeller domain; InterPro: IPR0 | 94.56 | |
| PF09826 | 521 | Beta_propel: Beta propeller domain; InterPro: IPR0 | 94.45 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 94.44 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 94.29 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 94.2 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 94.17 | |
| KOG3545 | 249 | consensus Olfactomedin and related extracellular m | 94.11 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 94.0 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 93.6 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 93.42 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 93.32 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 93.3 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 93.25 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 93.1 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 93.08 | |
| COG2133 | 399 | Glucose/sorbosone dehydrogenases [Carbohydrate tra | 93.07 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 93.0 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 92.99 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 92.96 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 92.84 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 92.82 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 92.74 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 92.67 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 92.64 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 92.61 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 92.57 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 92.55 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 92.5 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 92.48 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 92.25 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 92.13 | |
| PF13970 | 333 | DUF4221: Domain of unknown function (DUF4221); PDB | 91.96 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 91.91 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 91.91 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 91.84 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 91.73 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 91.45 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 91.42 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 91.4 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 91.37 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 91.31 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 91.08 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 91.07 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 90.95 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 90.9 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 90.82 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 90.78 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 90.57 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 90.54 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 90.39 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 90.35 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 90.34 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 89.82 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 89.49 | |
| PF13570 | 40 | PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A. | 89.47 | |
| KOG0379 | 482 | consensus Kelch repeat-containing proteins [Genera | 89.46 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 89.32 | |
| KOG1520 | 376 | consensus Predicted alkaloid synthase/Surface muci | 89.1 | |
| PF14298 | 435 | DUF4374: Domain of unknown function (DUF4374) | 89.01 | |
| PF13570 | 40 | PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A. | 88.94 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 88.85 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 88.78 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 88.75 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 88.72 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 88.6 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 88.44 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 88.23 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 88.09 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 88.03 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 87.74 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 87.67 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 87.61 | |
| PLN02258 | 590 | 9-cis-epoxycarotenoid dioxygenase NCED | 87.54 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 87.07 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 87.06 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 87.04 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 87.0 | |
| KOG1520 | 376 | consensus Predicted alkaloid synthase/Surface muci | 86.85 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 86.68 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 86.45 | |
| PF01731 | 86 | Arylesterase: Arylesterase; InterPro: IPR002640 Th | 86.21 | |
| KOG3545 | 249 | consensus Olfactomedin and related extracellular m | 86.18 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 86.13 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 85.9 | |
| KOG0379 | 482 | consensus Kelch repeat-containing proteins [Genera | 85.64 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 85.13 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 85.0 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 84.95 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 84.79 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 84.34 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 84.31 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 84.25 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 83.75 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 83.54 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 83.52 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 83.48 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 83.18 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 82.74 | |
| KOG3522 | 925 | consensus Predicted guanine nucleotide exchange fa | 82.72 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 82.66 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 82.61 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 82.52 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 82.45 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 81.91 | |
| PF01436 | 28 | NHL: NHL repeat; InterPro: IPR001258 The NHL repea | 81.01 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 81.01 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 80.81 | |
| PF01436 | 28 | NHL: NHL repeat; InterPro: IPR001258 The NHL repea | 80.71 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 80.49 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 80.14 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 80.08 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 80.05 |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-66 Score=474.04 Aligned_cols=188 Identities=49% Similarity=0.844 Sum_probs=160.9
Q ss_pred CCCCCceeeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEE
Q 023864 84 VDQSPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLF 163 (276)
Q Consensus 84 ~~~~~~~~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~Ly 163 (276)
....+++++++|+++||||+.+|||||+|..||+||||||+||+|+|+++|++||++.++++||+++||||||+.||+||
T Consensus 24 ~~~~~~~~~~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~ 103 (264)
T PF05096_consen 24 SAAPAPVYSYEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLY 103 (264)
T ss_dssp ------EEEEEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEE
T ss_pred ccCCCceeeeEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEE
Confidence 34567789999999999999999999999768999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCEEEEEeCCCCcEEEEEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEE
Q 023864 164 QVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEF 243 (276)
Q Consensus 164 qlTwk~~~v~V~D~~tlk~i~~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~ 243 (276)
||||+++++|+||++||+++++|+|+ +||||||+||+.|||||||++|+++||+||+++++|.|+++|+|+.+||||||
T Consensus 104 qLTWk~~~~f~yd~~tl~~~~~~~y~-~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~ 182 (264)
T PF05096_consen 104 QLTWKEGTGFVYDPNTLKKIGTFPYP-GEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEY 182 (264)
T ss_dssp EEESSSSEEEEEETTTTEEEEEEE-S-SS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEE
T ss_pred EEEecCCeEEEEccccceEEEEEecC-CcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEE
Confidence 99999999999999999999999998 79999999999999999999999999999999999999999999999999999
Q ss_pred ECCEEEEEeCCCCCeEEEEeCCCCcEEEEEE
Q 023864 244 IKGEVWANVWQVWPCIPYAYLQAFGSSLVYV 274 (276)
Q Consensus 244 idG~lyANvw~s~d~I~vIDp~T~~v~l~~~ 274 (276)
+||+||||||++ |+|++|||+||+|+ +.+
T Consensus 183 i~G~IyANVW~t-d~I~~Idp~tG~V~-~~i 211 (264)
T PF05096_consen 183 INGKIYANVWQT-DRIVRIDPETGKVV-GWI 211 (264)
T ss_dssp ETTEEEEEETTS-SEEEEEETTT-BEE-EEE
T ss_pred EcCEEEEEeCCC-CeEEEEeCCCCeEE-EEE
Confidence 999999999999 99999999997765 554
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-60 Score=421.34 Aligned_cols=185 Identities=37% Similarity=0.652 Sum_probs=177.1
Q ss_pred CCCceeeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecC-CCceEEEEEEeCCEEEE
Q 023864 86 QSPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLLGEKLFQ 164 (276)
Q Consensus 86 ~~~~~~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~-~~~FgEGit~~g~~Lyq 164 (276)
...+...++|+.+||||..+|||||++. ||++|||||+||.|+|+++|+++|+++...+++ +++||||+|..++.+||
T Consensus 27 a~t~~l~~evi~~yphDs~sfTQGL~~~-~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~ 105 (262)
T COG3823 27 AITKVLVYEVIRTYPHDSTSFTQGLEYL-DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQ 105 (262)
T ss_pred ccccCcceEEEEeccCchhhhhcceeee-CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEE
Confidence 3455667899999999999999999998 579999999999999999999999999999999 69999999999999999
Q ss_pred EEeeCCEEEEEeCCCCcEEEEEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE
Q 023864 165 VTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI 244 (276)
Q Consensus 165 lTwk~~~v~V~D~~tlk~i~~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i 244 (276)
|||+++.+|+||++|++.+++|+|+ +||||||.|++.|+||||++.|+|+||+||+++++|.|+++|.||.+||||||+
T Consensus 106 LTw~egvaf~~d~~t~~~lg~~~y~-GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V 184 (262)
T COG3823 106 LTWKEGVAFKYDADTLEELGRFSYE-GEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV 184 (262)
T ss_pred EEeccceeEEEChHHhhhhcccccC-CcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee
Confidence 9999999999999999999999999 899999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCCCeEEEEeCCCCcEEEEEE
Q 023864 245 KGEVWANVWQVWPCIPYAYLQAFGSSLVYV 274 (276)
Q Consensus 245 dG~lyANvw~s~d~I~vIDp~T~~v~l~~~ 274 (276)
||+||||||++ +.|++|||+||+|+ +.|
T Consensus 185 dG~lyANVw~t-~~I~rI~p~sGrV~-~wi 212 (262)
T COG3823 185 DGELYANVWQT-TRIARIDPDSGRVV-AWI 212 (262)
T ss_pred ccEEEEeeeee-cceEEEcCCCCcEE-EEE
Confidence 99999999999 99999999998876 554
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.1e-12 Score=121.97 Aligned_cols=94 Identities=10% Similarity=-0.065 Sum_probs=77.5
Q ss_pred eeeEEEEEEecCCCCCceEEEEecCC-EEEEEcCCC--------CCCeEEEEeCCCCcEEEEeecCCCce--------EE
Q 023864 91 YTIQVVNEFPHDPRAFTQGLLYAEND-TLFESTGLY--------GRSSVRRVALETGKVEAINQMEGSYF--------GE 153 (276)
Q Consensus 91 ~t~~Vv~~~Phd~~aFTQGL~~~~dg-~LyeStG~y--------g~S~I~~iDl~tgkv~~~~~l~~~~F--------gE 153 (276)
.+.+++.++|.. .+-+|+ +++|| .||.++. | +.+.|.+||++|+++++++++|+.+. .-
T Consensus 35 ~~~~v~g~i~~G--~~P~~~-~spDg~~lyva~~-~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~ 110 (352)
T TIGR02658 35 EAGRVLGMTDGG--FLPNPV-VASDGSFFAHAST-VYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMT 110 (352)
T ss_pred CCCEEEEEEEcc--CCCcee-ECCCCCEEEEEec-cccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceE
Confidence 367899999974 455686 99996 5888655 3 67899999999999999999987755 44
Q ss_pred EEEEeCCEEEEEEee-CCEEEEEeCCCCcEEEEEec
Q 023864 154 GLTLLGEKLFQVTWL-QKTGFIYDQNNLNKLEEFTH 188 (276)
Q Consensus 154 Git~~g~~LyqlTwk-~~~v~V~D~~tlk~i~~~~~ 188 (276)
+++.+|+.||+.++. ++.+.|+|.++.+++++++.
T Consensus 111 ~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v 146 (352)
T TIGR02658 111 SLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV 146 (352)
T ss_pred EECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC
Confidence 566677899999999 99999999999988887764
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.8e-12 Score=121.63 Aligned_cols=168 Identities=17% Similarity=0.132 Sum_probs=120.0
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCC
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK 170 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~ 170 (276)
+.+++.++|... +.--++.|++||+ +|++ + .+..|.+||+.+++++++++.+..+.+..++.+|..+|+.+|..+
T Consensus 25 t~~~~~~i~~~~-~~h~~~~~s~Dgr~~yv~-~--rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~ 100 (369)
T PF02239_consen 25 TNKVVARIPTGG-APHAGLKFSPDGRYLYVA-N--RDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPG 100 (369)
T ss_dssp T-SEEEEEE-ST-TEEEEEE-TT-SSEEEEE-E--TTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETT
T ss_pred CCeEEEEEcCCC-CceeEEEecCCCCEEEEE-c--CCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCC
Confidence 568999999743 3346788999875 8886 4 357999999999999999999998776666667899999999999
Q ss_pred EEEEEeCCCCcEEEEEecC-CCC--------eeEEeeCCCEEEEEC-CCceEEEEcCCCCc--EEEEEEeeeCCEeeeee
Q 023864 171 TGFIYDQNNLNKLEEFTHQ-MKD--------GWGLATDGKVLFGSD-GSSMLYQIDPQTLK--VIRKDIVRYKGREVRNL 238 (276)
Q Consensus 171 ~v~V~D~~tlk~i~~~~~~-~~E--------GWGLT~Dg~~L~vSD-GS~~L~viDp~t~~--vi~~I~V~~~g~pv~~l 238 (276)
.+.++|.+|++++++++.. .+. +.--++++..++++- .+.+|+++|.++.+ .++.+.++. .+
T Consensus 101 ~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~------~~ 174 (369)
T PF02239_consen 101 TVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGR------FP 174 (369)
T ss_dssp EEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--T------TE
T ss_pred ceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccc------cc
Confidence 9999999999999999864 111 222346667666665 68999999987765 345666664 55
Q ss_pred eeeEEE-CC-EEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 239 NELEFI-KG-EVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 239 NELE~i-dG-~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
.+..+. +| ++++..+.+ |.|.+||+++++.+
T Consensus 175 ~D~~~dpdgry~~va~~~s-n~i~viD~~~~k~v 207 (369)
T PF02239_consen 175 HDGGFDPDGRYFLVAANGS-NKIAVIDTKTGKLV 207 (369)
T ss_dssp EEEEE-TTSSEEEEEEGGG-TEEEEEETTTTEEE
T ss_pred cccccCcccceeeeccccc-ceeEEEeeccceEE
Confidence 566666 34 688988899 99999999997655
|
... |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.9e-11 Score=117.46 Aligned_cols=132 Identities=11% Similarity=-0.037 Sum_probs=106.7
Q ss_pred CEEEEEcCCC--CCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEe---------eCCEEEEEeCCCCcEEE
Q 023864 116 DTLFESTGLY--GRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW---------LQKTGFIYDQNNLNKLE 184 (276)
Q Consensus 116 g~LyeStG~y--g~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTw---------k~~~v~V~D~~tlk~i~ 184 (276)
.++|++...+ ..++|+++|.++++++.+++.+.++-+. ++.+++.||+++- .++.+.|||++|++.++
T Consensus 13 ~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~ 91 (352)
T TIGR02658 13 RRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIA 91 (352)
T ss_pred CEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEe
Confidence 3566665532 1389999999999999999999887775 7888899999999 99999999999999999
Q ss_pred EEecC-CCC--------eeEEeeCCCEEEEEC-C-CceEEEEcCCCCcEEEEEEeeeCCEeeee----eeeeEEECCEEE
Q 023864 185 EFTHQ-MKD--------GWGLATDGKVLFGSD-G-SSMLYQIDPQTLKVIRKDIVRYKGREVRN----LNELEFIKGEVW 249 (276)
Q Consensus 185 ~~~~~-~~E--------GWGLT~Dg~~L~vSD-G-S~~L~viDp~t~~vi~~I~V~~~g~pv~~----lNELE~idG~ly 249 (276)
+++.+ .|| ..+|++||++||++| - ++.|.++|.++.+++++|.|.+ +.-+.. -|=+-|+||...
T Consensus 92 ~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~~~~~Dg~~~ 170 (352)
T TIGR02658 92 DIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFFMHCRDGSLA 170 (352)
T ss_pred EEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCccEEEeecCceE
Confidence 99975 234 888999999999999 4 8999999999999999999965 222221 122336777633
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.6e-10 Score=101.49 Aligned_cols=167 Identities=15% Similarity=0.118 Sum_probs=122.1
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEE
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGF 173 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~ 173 (276)
+.+.+++++. ...++.+++||.++..+.. +.+.+..+|.+++++......+..+-.-.+..++..||+....++.+.
T Consensus 106 ~~~~~~~~~~--~~~~~~~~~dg~~l~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~ 182 (300)
T TIGR03866 106 KVLAEIPVGV--EPEGMAVSPDGKIVVNTSE-TTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVS 182 (300)
T ss_pred eEEeEeeCCC--CcceEEECCCCCEEEEEec-CCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEE
Confidence 5667776533 2468999999876554432 456788899999988777666655433334445677888777899999
Q ss_pred EEeCCCCcEEEEEecC---------CCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEE
Q 023864 174 IYDQNNLNKLEEFTHQ---------MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEF 243 (276)
Q Consensus 174 V~D~~tlk~i~~~~~~---------~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~ 243 (276)
+||.++.+.+++++.. .+.+..+++||+.+|++. ++++|.++|.+++++++.+.++. .+..+.+
T Consensus 183 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~------~~~~~~~ 256 (300)
T TIGR03866 183 VIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQ------RVWQLAF 256 (300)
T ss_pred EEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCC------CcceEEE
Confidence 9999999988887642 123556789999999976 57789999999999987775542 3445566
Q ss_pred E-CC-EEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 244 I-KG-EVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 244 i-dG-~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
. +| +||++.-.+ +.|.++|.++++++
T Consensus 257 ~~~g~~l~~~~~~~-~~i~v~d~~~~~~~ 284 (300)
T TIGR03866 257 TPDEKYLLTTNGVS-NDVSVIDVAALKVI 284 (300)
T ss_pred CCCCCEEEEEcCCC-CeEEEEECCCCcEE
Confidence 4 44 688887678 99999999996643
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.1e-10 Score=98.83 Aligned_cols=164 Identities=19% Similarity=0.288 Sum_probs=122.2
Q ss_pred eEEEEEEecCCCCCceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeC
Q 023864 93 IQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQ 169 (276)
Q Consensus 93 ~~Vv~~~Phd~~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~ 169 (276)
-+++..+.+.... .++.+++||. ||.+++ ..+.|++||++++++....+.+..+ ..+++. ++.+|+.+..+
T Consensus 21 ~~~~~~~~~~~~~--~~l~~~~dg~~l~~~~~--~~~~v~~~d~~~~~~~~~~~~~~~~--~~~~~~~~g~~l~~~~~~~ 94 (300)
T TIGR03866 21 LEVTRTFPVGQRP--RGITLSKDGKLLYVCAS--DSDTIQVIDLATGEVIGTLPSGPDP--ELFALHPNGKILYIANEDD 94 (300)
T ss_pred CceEEEEECCCCC--CceEECCCCCEEEEEEC--CCCeEEEEECCCCcEEEeccCCCCc--cEEEECCCCCEEEEEcCCC
Confidence 3466666653333 4799999875 777655 6788999999999987766554443 455554 56788888888
Q ss_pred CEEEEEeCCCCcEEEEEecC-CCCeeEEeeCCCEEEEECC-CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CC
Q 023864 170 KTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG 246 (276)
Q Consensus 170 ~~v~V~D~~tlk~i~~~~~~-~~EGWGLT~Dg~~L~vSDG-S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG 246 (276)
+.+.+||..+.+.+.+++.+ .+.+..+++||+.++++.. .+.++++|+++++.+..+.++. .++.+.+. ||
T Consensus 95 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~------~~~~~~~s~dg 168 (300)
T TIGR03866 95 NLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQ------RPRFAEFTADG 168 (300)
T ss_pred CeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCC------CccEEEECCCC
Confidence 99999999999999888744 3577788999999988774 4678889999998887766543 22334454 44
Q ss_pred -EEEEEeCCCCCeEEEEeCCCCcE
Q 023864 247 -EVWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 247 -~lyANvw~s~d~I~vIDp~T~~v 269 (276)
.||++.... +.|.++|.++++.
T Consensus 169 ~~l~~~~~~~-~~v~i~d~~~~~~ 191 (300)
T TIGR03866 169 KELWVSSEIG-GTVSVIDVATRKV 191 (300)
T ss_pred CEEEEEcCCC-CEEEEEEcCccee
Confidence 588887677 8999999999654
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3e-10 Score=104.96 Aligned_cols=171 Identities=10% Similarity=0.058 Sum_probs=112.2
Q ss_pred eEEEEEEecCCCCCceEEEEecCCE-EEEEcCCCCCCeEEEEeCCC-CcE---EEEeecCCCceEEEEEEeCCEEEEEEe
Q 023864 93 IQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALET-GKV---EAINQMEGSYFGEGLTLLGEKLFQVTW 167 (276)
Q Consensus 93 ~~Vv~~~Phd~~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~t-gkv---~~~~~l~~~~FgEGit~~g~~LyqlTw 167 (276)
.+.+++.+.... ..++.+++||+ ||.+ .|+.+.|.+||+++ |.+ +...+-...+.+..+...++.+|+.+.
T Consensus 70 l~~~~~~~~~~~--p~~i~~~~~g~~l~v~--~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~ 145 (330)
T PRK11028 70 LTFAAESPLPGS--PTHISTDHQGRFLFSA--SYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCL 145 (330)
T ss_pred eEEeeeecCCCC--ceEEEECCCCCEEEEE--EcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeC
Confidence 456677766333 46999999986 6654 36899999999974 432 222222233443334444679999999
Q ss_pred eCCEEEEEeCCCCcEEE-------EEecC-CCCeeEEeeCCCEEEEEC-CCceEEEEcCC--C--CcEEEEEEeeeCCE-
Q 023864 168 LQKTGFIYDQNNLNKLE-------EFTHQ-MKDGWGLATDGKVLFGSD-GSSMLYQIDPQ--T--LKVIRKDIVRYKGR- 233 (276)
Q Consensus 168 k~~~v~V~D~~tlk~i~-------~~~~~-~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~--t--~~vi~~I~V~~~g~- 233 (276)
.++.+.+||.++...+. +++.+ .+.+..+++||++||++| ++++|.++|.+ + ++++.++.....+.
T Consensus 146 ~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~ 225 (330)
T PRK11028 146 KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFS 225 (330)
T ss_pred CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCC
Confidence 99999999998744332 22222 467788999999999998 59999998865 3 34444444321110
Q ss_pred eeeeeeeeEEE-CC-EEEEEeCCCCCeEEEEeCCCCc
Q 023864 234 EVRNLNELEFI-KG-EVWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 234 pv~~lNELE~i-dG-~lyANvw~s~d~I~vIDp~T~~ 268 (276)
.-....++.+. || ++|+.+..+ +.|.++|.++.+
T Consensus 226 ~~~~~~~i~~~pdg~~lyv~~~~~-~~I~v~~i~~~~ 261 (330)
T PRK11028 226 DTRWAADIHITPDGRHLYACDRTA-SLISVFSVSEDG 261 (330)
T ss_pred CCccceeEEECCCCCEEEEecCCC-CeEEEEEEeCCC
Confidence 01133455544 34 699999889 999999876543
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.6e-10 Score=105.37 Aligned_cols=152 Identities=11% Similarity=0.062 Sum_probs=104.2
Q ss_pred eEEEEecCCE-EEEEcCCCCCCeEEEEeCCC-CcEEE------EeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCC-
Q 023864 108 QGLLYAENDT-LFESTGLYGRSSVRRVALET-GKVEA------INQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQN- 178 (276)
Q Consensus 108 QGL~~~~dg~-LyeStG~yg~S~I~~iDl~t-gkv~~------~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~- 178 (276)
.++.++|||+ ||.+. ++.+.|.+||+++ |++.. ..+.+..+.+..++.++..+|++++.++.+.+||.+
T Consensus 129 ~~~~~~p~g~~l~v~~--~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~ 206 (330)
T PRK11028 129 HSANIDPDNRTLWVPC--LKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKD 206 (330)
T ss_pred cEeEeCCCCCEEEEee--CCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence 4788999874 77653 5999999999987 43321 223455555444444567999999999999999976
Q ss_pred ---CCcEEEEEec-C---CCC----eeEEeeCCCEEEEEC-CCceEEEEcCC----CCcEEEEEEeeeCCEeeeeeeeeE
Q 023864 179 ---NLNKLEEFTH-Q---MKD----GWGLATDGKVLFGSD-GSSMLYQIDPQ----TLKVIRKDIVRYKGREVRNLNELE 242 (276)
Q Consensus 179 ---tlk~i~~~~~-~---~~E----GWGLT~Dg~~L~vSD-GS~~L~viDp~----t~~vi~~I~V~~~g~pv~~lNELE 242 (276)
+++.+.++.. + .++ ++.+++||++||++| +++.|.++|.+ .+++++.+.++. .+..+.
T Consensus 207 ~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~------~p~~~~ 280 (330)
T PRK11028 207 PHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTET------QPRGFN 280 (330)
T ss_pred CCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccc------cCCceE
Confidence 4455666542 1 012 355789999999999 68999998763 335566666653 233344
Q ss_pred EE-CC-EEEEEeCCCCCeEEEE--eCCCCc
Q 023864 243 FI-KG-EVWANVWQVWPCIPYA--YLQAFG 268 (276)
Q Consensus 243 ~i-dG-~lyANvw~s~d~I~vI--Dp~T~~ 268 (276)
+. || +|||++..+ +.|.++ |.++|.
T Consensus 281 ~~~dg~~l~va~~~~-~~v~v~~~~~~~g~ 309 (330)
T PRK11028 281 IDHSGKYLIAAGQKS-HHISVYEIDGETGL 309 (330)
T ss_pred ECCCCCEEEEEEccC-CcEEEEEEcCCCCc
Confidence 43 44 799999888 988886 666754
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.8e-10 Score=109.54 Aligned_cols=140 Identities=18% Similarity=0.105 Sum_probs=101.0
Q ss_pred CCCeEEEEeCCCCcEEEEeecCCCceEEEEEE--eCCEEEEEEeeCCEEEEEeCCCCcEEEEEecC-CCCeeEEeeCCCE
Q 023864 126 GRSSVRRVALETGKVEAINQMEGSYFGEGLTL--LGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKV 202 (276)
Q Consensus 126 g~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~--~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~-~~EGWGLT~Dg~~ 202 (276)
+.++|.++|.+|.+++.+++.+..+ ..++.. ++..+|+.+ +++.+.+||+.+.+++++++.+ .+.|.++++||++
T Consensus 14 ~~~~v~viD~~t~~~~~~i~~~~~~-h~~~~~s~Dgr~~yv~~-rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~ 91 (369)
T PF02239_consen 14 GSGSVAVIDGATNKVVARIPTGGAP-HAGLKFSPDGRYLYVAN-RDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKY 91 (369)
T ss_dssp GGTEEEEEETTT-SEEEEEE-STTE-EEEEE-TT-SSEEEEEE-TTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTE
T ss_pred CCCEEEEEECCCCeEEEEEcCCCCc-eeEEEecCCCCEEEEEc-CCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCE
Confidence 8899999999999999999987665 344444 567899987 6899999999999999999987 4677778999999
Q ss_pred EEEEC-CCceEEEEcCCCCcEEEEEEeeeCCE--eeeeeeeeEEE-C-CEEEEEeCCCCCeEEEEeCCCCc
Q 023864 203 LFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGR--EVRNLNELEFI-K-GEVWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 203 L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~--pv~~lNELE~i-d-G~lyANvw~s~d~I~vIDp~T~~ 268 (276)
+|++| ..+.|.++|.+|++++++|.++.... +-.+..-+-.. + .+..+|+..+ +.|.++|....+
T Consensus 92 ~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~-~~I~vVdy~d~~ 161 (369)
T PF02239_consen 92 VYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDT-GEIWVVDYSDPK 161 (369)
T ss_dssp EEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTT-TEEEEEETTTSS
T ss_pred EEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccC-CeEEEEEecccc
Confidence 99999 69999999999999999999974111 11122222222 2 3466899999 999999977653
|
... |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.1e-10 Score=103.88 Aligned_cols=158 Identities=12% Similarity=0.171 Sum_probs=107.5
Q ss_pred CCCceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCc--EEE--EeecCCCceEEEEEEe--CCEEEEEEeeCCEEEEEe
Q 023864 104 RAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGK--VEA--INQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYD 176 (276)
Q Consensus 104 ~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgk--v~~--~~~l~~~~FgEGit~~--g~~LyqlTwk~~~v~V~D 176 (276)
.+....+.++|||+ ||+. . .|.++|++|+++..+ +.. .+.++..-=+-.++++ ++.+|+++..++.+.+|+
T Consensus 143 ~~h~H~v~~~pdg~~v~v~-d-lG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~ 220 (345)
T PF10282_consen 143 GPHPHQVVFSPDGRFVYVP-D-LGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFD 220 (345)
T ss_dssp STCEEEEEE-TTSSEEEEE-E-TTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred cccceeEEECCCCCEEEEE-e-cCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEe
Confidence 45556899999975 7765 3 399999999987654 543 3344543334456665 579999999999999998
Q ss_pred CC----CCcEEEEEecC--------CCCeeEEeeCCCEEEEEC-CCceEEEEcC--CCCcE--EEEEEeeeCCEeeeeee
Q 023864 177 QN----NLNKLEEFTHQ--------MKDGWGLATDGKVLFGSD-GSSMLYQIDP--QTLKV--IRKDIVRYKGREVRNLN 239 (276)
Q Consensus 177 ~~----tlk~i~~~~~~--------~~EGWGLT~Dg~~L~vSD-GS~~L~viDp--~t~~v--i~~I~V~~~g~pv~~lN 239 (276)
.. .++.+.+++.- .+.+..+++||++||+|| |.+.|.+++. +++++ +..+.+ .|. .+.
T Consensus 221 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~--~G~---~Pr 295 (345)
T PF10282_consen 221 YDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT--GGK---FPR 295 (345)
T ss_dssp EETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE--SSS---SEE
T ss_pred ecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC--CCC---Ccc
Confidence 87 56666776531 123445899999999999 8998888875 55554 444444 233 233
Q ss_pred eeEE--ECCEEEEEeCCCCCeEEEE--eCCCCcE
Q 023864 240 ELEF--IKGEVWANVWQVWPCIPYA--YLQAFGS 269 (276)
Q Consensus 240 ELE~--idG~lyANvw~s~d~I~vI--Dp~T~~v 269 (276)
.+.+ .+.+|||.+-.+ |.|.++ |++||..
T Consensus 296 ~~~~s~~g~~l~Va~~~s-~~v~vf~~d~~tG~l 328 (345)
T PF10282_consen 296 HFAFSPDGRYLYVANQDS-NTVSVFDIDPDTGKL 328 (345)
T ss_dssp EEEE-TTSSEEEEEETTT-TEEEEEEEETTTTEE
T ss_pred EEEEeCCCCEEEEEecCC-CeEEEEEEeCCCCcE
Confidence 4555 345799999899 988865 7888763
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.7e-10 Score=107.25 Aligned_cols=161 Identities=12% Similarity=0.060 Sum_probs=130.5
Q ss_pred CCceEEEEecCC-EEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEe--eCCEEEEEeCCCCc
Q 023864 105 AFTQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW--LQKTGFIYDQNNLN 181 (276)
Q Consensus 105 aFTQGL~~~~dg-~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTw--k~~~v~V~D~~tlk 181 (276)
...+|+.+.+++ ++|..++ +.+.|.++|.++.++...+.++..+.+..++.+++.+|+.+- .++++.++|.++.+
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~--~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTG--DSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred ccccceeeCCCCCeEEEecC--CCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCe
Confidence 677899998876 4999888 789999999999999999999998777777777899999999 68999999999999
Q ss_pred EEEEEecC-CCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEE-E----EEeeeCCEeeeeeeeeEEECCEEEEEeCC
Q 023864 182 KLEEFTHQ-MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIR-K----DIVRYKGREVRNLNELEFIKGEVWANVWQ 254 (276)
Q Consensus 182 ~i~~~~~~-~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~-~----I~V~~~g~pv~~lNELE~idG~lyANvw~ 254 (276)
++++++.+ .|.|..+++||+.+|+.| +++.|.++|+++.++.+ + +.+.. .|.. ...-..+.++|+.+..
T Consensus 152 ~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~--~P~~--i~v~~~g~~~yV~~~~ 227 (381)
T COG3391 152 VTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGT--GPAG--IAVDPDGNRVYVANDG 227 (381)
T ss_pred EEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCC--CCce--EEECCCCCEEEEEecc
Confidence 99998876 467888999999999999 89999999999988874 2 33332 2221 0011234579999988
Q ss_pred CC-CeEEEEeCCCCcEEE
Q 023864 255 VW-PCIPYAYLQAFGSSL 271 (276)
Q Consensus 255 s~-d~I~vIDp~T~~v~l 271 (276)
++ +.|.+||.+++.+.-
T Consensus 228 ~~~~~v~~id~~~~~v~~ 245 (381)
T COG3391 228 SGSNNVLKIDTATGNVTA 245 (381)
T ss_pred CCCceEEEEeCCCceEEE
Confidence 72 499999999976653
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.8e-09 Score=93.39 Aligned_cols=159 Identities=14% Similarity=0.172 Sum_probs=110.3
Q ss_pred ceEEEEe-cCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecC----CCceEEEEEEe-CCEEEEEEeeC--------CEE
Q 023864 107 TQGLLYA-ENDTLFESTGLYGRSSVRRVALETGKVEAINQME----GSYFGEGLTLL-GEKLFQVTWLQ--------KTG 172 (276)
Q Consensus 107 TQGL~~~-~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~----~~~FgEGit~~-g~~LyqlTwk~--------~~v 172 (276)
.-|+.+. ++|.||.+.. ..+.++|++++++......+ +..+.-.++++ +++||+.+-.. +.+
T Consensus 42 ~~G~~~~~~~g~l~v~~~----~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v 117 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVADS----GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSV 117 (246)
T ss_dssp EEEEEEECTTSEEEEEET----TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEE
T ss_pred CceEEEEccCCEEEEEEc----CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccce
Confidence 5799999 7899998754 55677799999876666552 45667777876 47899988755 679
Q ss_pred EEEeCCCCcEEEEE-ecCCCCeeEEeeCCCEEEEEC-CCceEEEEcCC--CCcEEEEEEeee-CCEeeeeeeeeEEE-CC
Q 023864 173 FIYDQNNLNKLEEF-THQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQ--TLKVIRKDIVRY-KGREVRNLNELEFI-KG 246 (276)
Q Consensus 173 ~V~D~~tlk~i~~~-~~~~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~--t~~vi~~I~V~~-~g~pv~~lNELE~i-dG 246 (276)
+.+|++ .+...-. ....+.|.++++||+.||++| ...+|+.+|.+ +.++..+-.+.+ .+.. ..+.-|.+. +|
T Consensus 118 ~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-g~pDG~~vD~~G 195 (246)
T PF08450_consen 118 YRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP-GYPDGLAVDSDG 195 (246)
T ss_dssp EEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS-CEEEEEEEBTTS
T ss_pred EEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC-cCCCcceEcCCC
Confidence 999998 4432222 123468999999999999999 79999999985 333432222211 1111 234456665 78
Q ss_pred EEEEEeCCCCCeEEEEeCCCCcEEEEEE
Q 023864 247 EVWANVWQVWPCIPYAYLQAFGSSLVYV 274 (276)
Q Consensus 247 ~lyANvw~s~d~I~vIDp~T~~v~l~~~ 274 (276)
.||++.|.. +.|.++||+ |+++ ..|
T Consensus 196 ~l~va~~~~-~~I~~~~p~-G~~~-~~i 220 (246)
T PF08450_consen 196 NLWVADWGG-GRIVVFDPD-GKLL-REI 220 (246)
T ss_dssp -EEEEEETT-TEEEEEETT-SCEE-EEE
T ss_pred CEEEEEcCC-CEEEEECCC-ccEE-EEE
Confidence 999999999 999999999 6643 444
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2e-09 Score=103.50 Aligned_cols=174 Identities=15% Similarity=0.077 Sum_probs=136.9
Q ss_pred eeEEEEEEecCCCCCceEEEEecCC-EEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCC
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK 170 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg-~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~ 170 (276)
+.+++++.+... ..+|+.+++++ .+|++...++.+.+.++|.+++++++..+.+..+++..++..+.++|+.+--++
T Consensus 105 ~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~ 182 (381)
T COG3391 105 TNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDN 182 (381)
T ss_pred ccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCC
Confidence 466777777754 66799999986 799987766789999999999999999999888866666667899999999999
Q ss_pred EEEEEeCCCCcEEE-E----EecC-CCCeeEEeeCCCEEEEECC-C--ceEEEEcCCCCcEEEE-EEeeeCCEeeeeeee
Q 023864 171 TGFIYDQNNLNKLE-E----FTHQ-MKDGWGLATDGKVLFGSDG-S--SMLYQIDPQTLKVIRK-DIVRYKGREVRNLNE 240 (276)
Q Consensus 171 ~v~V~D~~tlk~i~-~----~~~~-~~EGWGLT~Dg~~L~vSDG-S--~~L~viDp~t~~vi~~-I~V~~~g~pv~~lNE 240 (276)
.++++|.++-++.. + +... .|.+..+.+||+.+|+.+. + .++..+|..+.++... ..+..+ .|....
T Consensus 183 ~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~-- 259 (381)
T COG3391 183 TVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVA-- 259 (381)
T ss_pred eEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCcee--
Confidence 99999998888774 2 3322 4566678899999999994 4 5999999999999887 555543 332211
Q ss_pred eEEECCEEEEEeCCCCCeEEEEeCCCCcEEE
Q 023864 241 LEFIKGEVWANVWQVWPCIPYAYLQAFGSSL 271 (276)
Q Consensus 241 LE~idG~lyANvw~s~d~I~vIDp~T~~v~l 271 (276)
....+.++|+..-+. +.+.+||..+.+++.
T Consensus 260 ~~p~g~~~yv~~~~~-~~V~vid~~~~~v~~ 289 (381)
T COG3391 260 VDPAGKAAYVANSQG-GTVSVIDGATDRVVK 289 (381)
T ss_pred ECCCCCEEEEEecCC-CeEEEEeCCCCceee
Confidence 224566799877778 999999999976653
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=99.17 E-value=5e-10 Score=114.05 Aligned_cols=144 Identities=17% Similarity=0.140 Sum_probs=117.2
Q ss_pred cCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEee------------------------
Q 023864 114 ENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL------------------------ 168 (276)
Q Consensus 114 ~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk------------------------ 168 (276)
+||+ |++ + ....+.++++|.++.++..++.++.++....++.+++.+|+..+.
T Consensus 202 nDGk~l~~-~-~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~ 279 (635)
T PRK02888 202 NDGKDLDD-P-KKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA 279 (635)
T ss_pred CCCCEeec-c-cceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence 3554 433 3 236789999999999999999999888777777778888887532
Q ss_pred ---------------CCEEEEEeCCC-----CcEEEEEecC-CCCeeEEeeCCCEEEEECC-CceEEEEcCCCCc-----
Q 023864 169 ---------------QKTGFIYDQNN-----LNKLEEFTHQ-MKDGWGLATDGKVLFGSDG-SSMLYQIDPQTLK----- 221 (276)
Q Consensus 169 ---------------~~~v~V~D~~t-----lk~i~~~~~~-~~EGWGLT~Dg~~L~vSDG-S~~L~viDp~t~~----- 221 (276)
+++|.|+|..+ .+.+..++.+ .|+|..++|||+++|++++ |+.|+|||.++++
T Consensus 280 ~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~ 359 (635)
T PRK02888 280 RIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDG 359 (635)
T ss_pred HHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhc
Confidence 27899999999 7899999998 6777778999999999996 9999999999988
Q ss_pred -------EEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCCCCCeEEEEeCCC
Q 023864 222 -------VIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQVWPCIPYAYLQA 266 (276)
Q Consensus 222 -------vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~s~d~I~vIDp~T 266 (276)
+++++.|+. .|++ -+|. +|..|...+-+ ..|++.|.++
T Consensus 360 ~~~~~~~vvaevevGl--GPLH----TaFDg~G~aytslf~d-sqv~kwn~~~ 405 (635)
T PRK02888 360 KIKPRDAVVAEPELGL--GPLH----TAFDGRGNAYTTLFLD-SQIVKWNIEA 405 (635)
T ss_pred cCCccceEEEeeccCC--Ccce----EEECCCCCEEEeEeec-ceeEEEehHH
Confidence 588899976 4443 2354 45799999999 9999999876
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.9e-08 Score=108.52 Aligned_cols=159 Identities=14% Similarity=0.152 Sum_probs=113.6
Q ss_pred ceEEEEec-CCEEEEEcCCCCCCeEEEEeCCCCcEEEEee------cC-------CCceEEEEEEe--CCEEEEEEeeCC
Q 023864 107 TQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQ------ME-------GSYFGEGLTLL--GEKLFQVTWLQK 170 (276)
Q Consensus 107 TQGL~~~~-dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~------l~-------~~~FgEGit~~--g~~LyqlTwk~~ 170 (276)
..|+.+++ ++.||++.. +.+.|++||+.+|.+..-.. .. .-..+.||++. +++||+++..++
T Consensus 685 P~gVa~dp~~g~LyVad~--~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~ 762 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMA--GQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESS 762 (1057)
T ss_pred CeEEEEecCCCeEEEEEC--CCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCC
Confidence 35899998 588999865 89999999999887632110 00 01134567775 467999999999
Q ss_pred EEEEEeCCCCcEEEEE-----------e------------cCCCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEE
Q 023864 171 TGFIYDQNNLNKLEEF-----------T------------HQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKD 226 (276)
Q Consensus 171 ~v~V~D~~tlk~i~~~-----------~------------~~~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I 226 (276)
++.+||+++.+..-.. . ...|.|..+++||+ +||+| +.++|.++|+++.++....
T Consensus 763 ~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~tia 841 (1057)
T PLN02919 763 SIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTLA 841 (1057)
T ss_pred eEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEEe
Confidence 9999999876532100 0 11245666777775 89999 7899999999998877555
Q ss_pred EeeeC----CE----eeeeeeeeEEE-CCEEEEEeCCCCCeEEEEeCCCCcE
Q 023864 227 IVRYK----GR----EVRNLNELEFI-KGEVWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 227 ~V~~~----g~----pv~~lNELE~i-dG~lyANvw~s~d~I~vIDp~T~~v 269 (276)
.++.. |. ....++.+.+. ||+||+..... ++|.+||.+++++
T Consensus 842 G~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N-n~Irvid~~~~~~ 892 (1057)
T PLN02919 842 GTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN-SLIRYLDLNKGEA 892 (1057)
T ss_pred ccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC-CEEEEEECCCCcc
Confidence 44421 11 22356666665 68999999999 9999999999765
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-08 Score=110.20 Aligned_cols=157 Identities=17% Similarity=0.120 Sum_probs=112.0
Q ss_pred ceEEEEecCC-EEEEEcCCCCCCeEEEEeCCCCcEEEEeecC-------C--------CceEEEEEEe--CCEEEEEEee
Q 023864 107 TQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQME-------G--------SYFGEGLTLL--GEKLFQVTWL 168 (276)
Q Consensus 107 TQGL~~~~dg-~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~-------~--------~~FgEGit~~--g~~LyqlTwk 168 (276)
.+|+++++++ .||++.. +...|+++|+.++++..-..-+ . -..+.|++++ ++.||+..+.
T Consensus 626 P~GIavd~~gn~LYVaDt--~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADT--ENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred CcEEEEeCCCCEEEEEeC--CCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence 5799999864 6998755 7789999999998763321100 0 0123467776 6899999999
Q ss_pred CCEEEEEeCCCCcEEEEEe-----------------cCCCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeee
Q 023864 169 QKTGFIYDQNNLNKLEEFT-----------------HQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRY 230 (276)
Q Consensus 169 ~~~v~V~D~~tlk~i~~~~-----------------~~~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~ 230 (276)
++++.+||+.+.... .+. ...|.|..+++||++||++| ++++|.++|+++.... +.++.
T Consensus 704 ~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~--~~~gg 780 (1057)
T PLN02919 704 QHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSR--LLAGG 780 (1057)
T ss_pred CCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEE--EEEec
Confidence 999999999876542 110 11356777889999999999 6899999999987652 22210
Q ss_pred --------------CCE----eeeeeeeeEEE-CCEEEEEeCCCCCeEEEEeCCCCcE
Q 023864 231 --------------KGR----EVRNLNELEFI-KGEVWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 231 --------------~g~----pv~~lNELE~i-dG~lyANvw~s~d~I~vIDp~T~~v 269 (276)
+|. ...++..+.+. +|.||+..+.. ++|.+||++++.+
T Consensus 781 ~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N-~rIrviD~~tg~v 837 (1057)
T PLN02919 781 DPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN-HKIKKLDPATKRV 837 (1057)
T ss_pred ccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC-CEEEEEECCCCeE
Confidence 010 12245556655 67899999999 9999999999654
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.6e-07 Score=78.71 Aligned_cols=171 Identities=16% Similarity=0.126 Sum_probs=120.2
Q ss_pred eeEEEEEEecCCCCCceEE--EEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeC
Q 023864 92 TIQVVNEFPHDPRAFTQGL--LYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ 169 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL--~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~ 169 (276)
+-+++-+++. ...+..++ .+..++++|.++ +...|..+|..||+++-+..++...... ....++++|+++ .+
T Consensus 12 tG~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~---~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~v~v~~-~~ 85 (238)
T PF13360_consen 12 TGKELWSYDL-GPGIGGPVATAVPDGGRVYVAS---GDGNLYALDAKTGKVLWRFDLPGPISGA-PVVDGGRVYVGT-SD 85 (238)
T ss_dssp TTEEEEEEEC-SSSCSSEEETEEEETTEEEEEE---TTSEEEEEETTTSEEEEEEECSSCGGSG-EEEETTEEEEEE-TT
T ss_pred CCCEEEEEEC-CCCCCCccceEEEeCCEEEEEc---CCCEEEEEECCCCCEEEEeeccccccce-eeeccccccccc-ce
Confidence 4456666666 22365666 664578999863 6789999999999999999886554433 478899999999 55
Q ss_pred CEEEEEeCCCCcEEEEE-ecC---CC--CeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeC--CEeee----e
Q 023864 170 KTGFIYDQNNLNKLEEF-THQ---MK--DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYK--GREVR----N 237 (276)
Q Consensus 170 ~~v~V~D~~tlk~i~~~-~~~---~~--EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~--g~pv~----~ 237 (276)
+.++.+|..|.+++.++ ... .+ .....+.+|+.+|+...+..|+.+|++|++++-+..+... ..++. .
T Consensus 86 ~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~ 165 (238)
T PF13360_consen 86 GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDI 165 (238)
T ss_dssp SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTE
T ss_pred eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeeccc
Confidence 69999999999999985 321 11 1122455699999998899999999999999988888431 11211 1
Q ss_pred eeeeEEECCEEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 238 LNELEFIKGEVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 238 lNELE~idG~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
...+.+.+|+||+..-.. .++.+|.++|++.
T Consensus 166 ~~~~~~~~~~v~~~~~~g--~~~~~d~~tg~~~ 196 (238)
T PF13360_consen 166 NGSPVISDGRVYVSSGDG--RVVAVDLATGEKL 196 (238)
T ss_dssp EEEEECCTTEEEEECCTS--SEEEEETTTTEEE
T ss_pred ccceEEECCEEEEEcCCC--eEEEEECCCCCEE
Confidence 223334467888877433 3555599997743
|
... |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.1e-07 Score=85.78 Aligned_cols=171 Identities=12% Similarity=0.014 Sum_probs=118.5
Q ss_pred eeeEEEEEEecCCCC----CceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEE
Q 023864 91 YTIQVVNEFPHDPRA----FTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVT 166 (276)
Q Consensus 91 ~t~~Vv~~~Phd~~a----FTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlT 166 (276)
.+.+++=+++..... ...+..+. ++++|.++. ...|..+|.++|+++=+.+++... .-+.++.++++|+.+
T Consensus 38 ~~~~~~W~~~~~~~~~~~~~~~~p~v~-~~~v~v~~~---~g~v~a~d~~tG~~~W~~~~~~~~-~~~p~v~~~~v~v~~ 112 (377)
T TIGR03300 38 VKVDQVWSASVGDGVGHYYLRLQPAVA-GGKVYAADA---DGTVVALDAETGKRLWRVDLDERL-SGGVGADGGLVFVGT 112 (377)
T ss_pred CcceeeeEEEcCCCcCccccccceEEE-CCEEEEECC---CCeEEEEEccCCcEeeeecCCCCc-ccceEEcCCEEEEEc
Confidence 455666677664322 22355666 589997654 357999999999998888888653 446788899999877
Q ss_pred eeCCEEEEEeCCCCcEEEEEecCCCCeeE-EeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEEC
Q 023864 167 WLQKTGFIYDQNNLNKLEEFTHQMKDGWG-LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIK 245 (276)
Q Consensus 167 wk~~~v~V~D~~tlk~i~~~~~~~~EGWG-LT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~id 245 (276)
. ++.++.+|++|.+++-+...+ .+-.+ ..-+++.+|+..++..|+.+|+++++++-+..............-....+
T Consensus 113 ~-~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~ 190 (377)
T TIGR03300 113 E-KGEVIALDAEDGKELWRAKLS-SEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIAD 190 (377)
T ss_pred C-CCEEEEEECCCCcEeeeeccC-ceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEEC
Confidence 5 689999999999999888765 22222 22356788888888899999999999876665432111000001122457
Q ss_pred CEEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 246 GEVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 246 G~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
|.+|+.. .. ..+..||+++|++.
T Consensus 191 ~~v~~~~-~~-g~v~ald~~tG~~~ 213 (377)
T TIGR03300 191 GGVLVGF-AG-GKLVALDLQTGQPL 213 (377)
T ss_pred CEEEEEC-CC-CEEEEEEccCCCEe
Confidence 7888765 45 78999999998754
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.3e-07 Score=89.31 Aligned_cols=175 Identities=15% Similarity=0.149 Sum_probs=121.1
Q ss_pred eeeEEEEEEecCCCCCceEEEEecCCE-EEEEcCCCCCCeEEEEeCCC-CcEEEEee--------------cCCCceEEE
Q 023864 91 YTIQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALET-GKVEAINQ--------------MEGSYFGEG 154 (276)
Q Consensus 91 ~t~~Vv~~~Phd~~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~t-gkv~~~~~--------------l~~~~FgEG 154 (276)
.+.+.+++.+.. ..-.-.+.+++|++ ||.+ .|+.+.|.+++++. |++..... -.+++-...
T Consensus 74 g~L~~~~~~~~~-g~~p~~i~~~~~g~~l~va--ny~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~ 150 (345)
T PF10282_consen 74 GTLTLLNSVPSG-GSSPCHIAVDPDGRFLYVA--NYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVV 150 (345)
T ss_dssp TEEEEEEEEEES-SSCEEEEEECTTSSEEEEE--ETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEE
T ss_pred ceeEEeeeeccC-CCCcEEEEEecCCCEEEEE--EccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEE
Confidence 367788898863 34445899998875 7764 58999999999987 66654421 123444444
Q ss_pred EEEeCCEEEEEEeeCCEEEEEeCCC----CcEEEEEecC---CCCeeEEeeCCCEEEEEC-CCceEEEEcCC--C--CcE
Q 023864 155 LTLLGEKLFQVTWLQKTGFIYDQNN----LNKLEEFTHQ---MKDGWGLATDGKVLFGSD-GSSMLYQIDPQ--T--LKV 222 (276)
Q Consensus 155 it~~g~~LyqlTwk~~~v~V~D~~t----lk~i~~~~~~---~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~--t--~~v 222 (276)
++.+++.+|+.....+++++|+.+. ++....+..+ .|.+..+++||+++|+.+ .+++|.+++.. + ++.
T Consensus 151 ~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~ 230 (345)
T PF10282_consen 151 FSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTE 230 (345)
T ss_dssp E-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred ECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeE
Confidence 5555789999999999999998765 3344555544 355677999999999988 69999999876 4 445
Q ss_pred EEEEEeeeCCEee-eeeeeeEEE-CC-EEEEEeCCCCCeEEEEeC--CCCcE
Q 023864 223 IRKDIVRYKGREV-RNLNELEFI-KG-EVWANVWQVWPCIPYAYL--QAFGS 269 (276)
Q Consensus 223 i~~I~V~~~g~pv-~~lNELE~i-dG-~lyANvw~s~d~I~vIDp--~T~~v 269 (276)
+.++.....+..- ....|+... || +|||.+-.. |.|++++. ++|+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~-~sI~vf~~d~~~g~l 281 (345)
T PF10282_consen 231 IQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS-NSISVFDLDPATGTL 281 (345)
T ss_dssp EEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTT-TEEEEEEECTTTTTE
T ss_pred EEEeeeccccccccCCceeEEEecCCCEEEEEeccC-CEEEEEEEecCCCce
Confidence 5566554332211 256777777 55 699999999 99988886 55553
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.9e-07 Score=85.57 Aligned_cols=165 Identities=19% Similarity=0.228 Sum_probs=118.6
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCE
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKT 171 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~ 171 (276)
+-+++++.+.++.-|=+|+++.+ ++||.=| |.+....+||.+|-+.+.+.+.+.. |=|||-++++||+-+. +++
T Consensus 77 tg~~~~~~~l~~~~FgEGit~~~-d~l~qLT--Wk~~~~f~yd~~tl~~~~~~~y~~E--GWGLt~dg~~Li~SDG-S~~ 150 (264)
T PF05096_consen 77 TGKVLQSVPLPPRYFGEGITILG-DKLYQLT--WKEGTGFVYDPNTLKKIGTFPYPGE--GWGLTSDGKRLIMSDG-SSR 150 (264)
T ss_dssp TSSEEEEEE-TTT--EEEEEEET-TEEEEEE--SSSSEEEEEETTTTEEEEEEE-SSS----EEEECSSCEEEE-S-SSE
T ss_pred CCcEEEEEECCccccceeEEEEC-CEEEEEE--ecCCeEEEEccccceEEEEEecCCc--ceEEEcCCCEEEEECC-ccc
Confidence 45788999999999999999995 7888764 4788899999999999999999877 5589989999988887 899
Q ss_pred EEEEeCCCCcEEEEEecC-CCCeeE----EeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeee-------CCE---ee
Q 023864 172 GFIYDQNNLNKLEEFTHQ-MKDGWG----LATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRY-------KGR---EV 235 (276)
Q Consensus 172 v~V~D~~tlk~i~~~~~~-~~EGWG----LT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~-------~g~---pv 235 (276)
++.+|++++++++++... .+.... |-.-+..+|..= .++.|..|||+|++|++.+.... +.. ..
T Consensus 151 L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~ 230 (264)
T PF05096_consen 151 LYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDD 230 (264)
T ss_dssp EEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TT
T ss_pred eEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccC
Confidence 999999999999999754 222332 444456777755 79999999999999999998852 111 13
Q ss_pred eeeeeeEEE--CCEEEEEeCCCCCeEEEEe
Q 023864 236 RNLNELEFI--KGEVWANVWQVWPCIPYAY 263 (276)
Q Consensus 236 ~~lNELE~i--dG~lyANvw~s~d~I~vID 263 (276)
.-||-+.|+ .+++|+.= .-|+.+..|.
T Consensus 231 dVLNGIAyd~~~~~l~vTG-K~Wp~lyeV~ 259 (264)
T PF05096_consen 231 DVLNGIAYDPETDRLFVTG-KLWPKLYEVK 259 (264)
T ss_dssp S-EEEEEEETTTTEEEEEE-TT-SEEEEEE
T ss_pred CeeEeEeEeCCCCEEEEEe-CCCCceEEEE
Confidence 569999996 56888774 3336677664
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.4e-08 Score=98.42 Aligned_cols=156 Identities=19% Similarity=0.181 Sum_probs=114.6
Q ss_pred CCCCCceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCC---------------C-ceEE-----EEEEeC
Q 023864 102 DPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEG---------------S-YFGE-----GLTLLG 159 (276)
Q Consensus 102 d~~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~---------------~-~FgE-----Git~~g 159 (276)
..-+||.|- + ||+ ||.- .--..+|.+++++..|..+-+.+|. . .|+- =+.-+|
T Consensus 130 p~~s~t~g~-y--dGr~~fin--dk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDG 204 (635)
T PRK02888 130 PHMSFTDGT-Y--DGRYLFIN--DKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDG 204 (635)
T ss_pred CcccccCCc-c--ceeEEEEe--cCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCC
Confidence 345677774 2 455 7753 2367899999999888766665551 1 1111 111123
Q ss_pred CEEEEEEeeCCEEEEEeCCCCcEEEEEecC-CCCeeEEeeCCCEEEEEC-------------------------------
Q 023864 160 EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSD------------------------------- 207 (276)
Q Consensus 160 ~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~-~~EGWGLT~Dg~~L~vSD------------------------------- 207 (276)
..++......+.+.++|.+++++..++..+ .+.+..+++||+++|++.
T Consensus 205 k~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~ 284 (635)
T PRK02888 205 KDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEA 284 (635)
T ss_pred CEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHh
Confidence 467777778899999999999999999887 678888999999999985
Q ss_pred ---------CCceEEEEcCCC-----CcEEEEEEeeeCCEeeeeeeeeEEE-CC-EEEEEeCCCCCeEEEEeCCCCcE
Q 023864 208 ---------GSSMLYQIDPQT-----LKVIRKDIVRYKGREVRNLNELEFI-KG-EVWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 208 ---------GS~~L~viDp~t-----~~vi~~I~V~~~g~pv~~lNELE~i-dG-~lyANvw~s~d~I~vIDp~T~~v 269 (276)
+.++|.+||+.+ .++++.|.|+...+- + ... || ++|++++.+ +.|+|||.++.+.
T Consensus 285 vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHG---V---~vSPDGkylyVanklS-~tVSVIDv~k~k~ 355 (635)
T PRK02888 285 VKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHG---V---NTSPDGKYFIANGKLS-PTVTVIDVRKLDD 355 (635)
T ss_pred hhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccc---e---EECCCCCEEEEeCCCC-CcEEEEEChhhhh
Confidence 237799999999 789999999863221 2 222 44 699999999 9999999999764
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.7e-07 Score=78.13 Aligned_cols=141 Identities=13% Similarity=0.066 Sum_probs=101.3
Q ss_pred CCeEEEEeCCCCcEEEEeecCCCceEEEE--EE-eCCEEEEEEeeCCEEEEEeCCCCcEEEEEecCCCCeeEEeeCCCEE
Q 023864 127 RSSVRRVALETGKVEAINQMEGSYFGEGL--TL-LGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVL 203 (276)
Q Consensus 127 ~S~I~~iDl~tgkv~~~~~l~~~~FgEGi--t~-~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~EGWGLT~Dg~~L 203 (276)
+..|..+|+++|+.+-+..+++. ++.+. ++ .++++|+.+ .++.++.+|++|.+++.++..+.+-......++..+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~v~~~~-~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPG-IGGPVATAVPDGGRVYVAS-GDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSS-CSSEEETEEEETTEEEEEE-TTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEE
T ss_pred CCEEEEEECCCCCEEEEEECCCC-CCCccceEEEeCCEEEEEc-CCCEEEEEECCCCCEEEEeeccccccceeeeccccc
Confidence 46799999999999999988431 33344 44 889999995 899999999999999999987521112246667777
Q ss_pred EEECCCceEEEEcCCCCcEEEEEEeee-CCEeeeeeeeeEEECCEEEEEeCCCCCeEEEEeCCCCcEEE
Q 023864 204 FGSDGSSMLYQIDPQTLKVIRKDIVRY-KGREVRNLNELEFIKGEVWANVWQVWPCIPYAYLQAFGSSL 271 (276)
Q Consensus 204 ~vSDGS~~L~viDp~t~~vi~~I~V~~-~g~pv~~lNELE~idG~lyANvw~s~d~I~vIDp~T~~v~l 271 (276)
|+..+++.|+.+|++|++++-++.-.. ...++...-...+.++.+|+... . ..|..+|++||+++-
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-g~l~~~d~~tG~~~w 146 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-S-GKLVALDPKTGKLLW 146 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-C-SEEEEEETTTTEEEE
T ss_pred ccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec-c-CcEEEEecCCCcEEE
Confidence 776666699999999999987753322 11111112223344778888874 6 899999999987753
|
... |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.3e-06 Score=81.74 Aligned_cols=151 Identities=9% Similarity=0.058 Sum_probs=105.2
Q ss_pred EEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC----------CceEEEEEEeCCEEEEEEeeCCEEEEEeCCCC
Q 023864 111 LYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG----------SYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNL 180 (276)
Q Consensus 111 ~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~----------~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tl 180 (276)
.+. +|++|..+. ...|..+|.+||+++=+.+++. ..+..|.++.++++|+.+ .++.++.+|++|.
T Consensus 66 vv~-~~~vy~~~~---~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~-~~g~l~ald~~tG 140 (394)
T PRK11138 66 AVA-YNKVYAADR---AGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGS-EKGQVYALNAEDG 140 (394)
T ss_pred EEE-CCEEEEECC---CCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEc-CCCEEEEEECCCC
Confidence 444 589998644 3589999999999887777664 133456888999999876 5678999999999
Q ss_pred cEEEEEecCCCCeeE-EeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCCCCeE
Q 023864 181 NKLEEFTHQMKDGWG-LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQVWPCI 259 (276)
Q Consensus 181 k~i~~~~~~~~EGWG-LT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s~d~I 259 (276)
+++-+++.+ ++.++ -.-.++.+|+..+...|+-+|++|++++=+..............--...+|.+|+.. .+ +.+
T Consensus 141 ~~~W~~~~~-~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~-~~-g~v 217 (394)
T PRK11138 141 EVAWQTKVA-GEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGG-DN-GRV 217 (394)
T ss_pred CCcccccCC-CceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEc-CC-CEE
Confidence 999988765 33333 122466888888888999999999999866654311000000000113467777755 35 789
Q ss_pred EEEeCCCCcE
Q 023864 260 PYAYLQAFGS 269 (276)
Q Consensus 260 ~vIDp~T~~v 269 (276)
..+|+++|+.
T Consensus 218 ~a~d~~~G~~ 227 (394)
T PRK11138 218 SAVLMEQGQL 227 (394)
T ss_pred EEEEccCChh
Confidence 9999998764
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.6e-06 Score=74.93 Aligned_cols=144 Identities=19% Similarity=0.235 Sum_probs=102.3
Q ss_pred CceEEEEec-CCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeCCEEEEEeCCCCcE
Q 023864 106 FTQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLNK 182 (276)
Q Consensus 106 FTQGL~~~~-dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~~~v~V~D~~tlk~ 182 (276)
|.+|..|++ +|.||.+.- ....|+++|+++++. ..+.++. .-|+++. +++||++.. +...++|+++.+.
T Consensus 1 l~Egp~~d~~~g~l~~~D~--~~~~i~~~~~~~~~~-~~~~~~~---~~G~~~~~~~g~l~v~~~--~~~~~~d~~~g~~ 72 (246)
T PF08450_consen 1 LGEGPVWDPRDGRLYWVDI--PGGRIYRVDPDTGEV-EVIDLPG---PNGMAFDRPDGRLYVADS--GGIAVVDPDTGKV 72 (246)
T ss_dssp CEEEEEEETTTTEEEEEET--TTTEEEEEETTTTEE-EEEESSS---EEEEEEECTTSEEEEEET--TCEEEEETTTTEE
T ss_pred CCcceEEECCCCEEEEEEc--CCCEEEEEECCCCeE-EEEecCC---CceEEEEccCCEEEEEEc--CceEEEecCCCcE
Confidence 568999997 789998754 678999999999976 3456665 6688887 689998874 4445559888765
Q ss_pred EEEEec-----C--CCCeeEEeeCCCEEEEEC-CC--------ceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-C
Q 023864 183 LEEFTH-----Q--MKDGWGLATDGKVLFGSD-GS--------SMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-K 245 (276)
Q Consensus 183 i~~~~~-----~--~~EGWGLT~Dg~~L~vSD-GS--------~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-d 245 (276)
..-+.. + .+....+.+||. ||++| +. ..|+.+|+. .++..-. ..+..+|.|.+. |
T Consensus 73 ~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~------~~~~~pNGi~~s~d 144 (246)
T PF08450_consen 73 TVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA------DGLGFPNGIAFSPD 144 (246)
T ss_dssp EEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE------EEESSEEEEEEETT
T ss_pred EEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEe------cCcccccceEECCc
Confidence 443332 1 123344566766 99988 43 469999999 6543221 125688999998 3
Q ss_pred C-EEEEEeCCCCCeEEEEeCCC
Q 023864 246 G-EVWANVWQVWPCIPYAYLQA 266 (276)
Q Consensus 246 G-~lyANvw~s~d~I~vIDp~T 266 (276)
| .||++.-.. ++|.++|+..
T Consensus 145 g~~lyv~ds~~-~~i~~~~~~~ 165 (246)
T PF08450_consen 145 GKTLYVADSFN-GRIWRFDLDA 165 (246)
T ss_dssp SSEEEEEETTT-TEEEEEEEET
T ss_pred chheeeccccc-ceeEEEeccc
Confidence 4 699999899 9999999964
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.8e-06 Score=82.71 Aligned_cols=159 Identities=16% Similarity=0.235 Sum_probs=104.9
Q ss_pred EEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEe--ecCCCceEEEEEEe--CCEEEEEEeeCCEEEEEeCCC----C
Q 023864 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAIN--QMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNN----L 180 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~--~l~~~~FgEGit~~--g~~LyqlTwk~~~v~V~D~~t----l 180 (276)
=-.++||++....+-+ |.++|..||++.|++.... .+.+..=+-=|+++ ++-.|+++..+++|.|+..+. +
T Consensus 149 ~a~~tP~~~~l~v~DL-G~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~ 227 (346)
T COG2706 149 SANFTPDGRYLVVPDL-GTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKF 227 (346)
T ss_pred eeeeCCCCCEEEEeec-CCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceE
Confidence 3456788865555666 9999999999999875543 23332223346665 479999999999999977654 3
Q ss_pred cEEEEEec-C---CCCeeE----EeeCCCEEEEEC-CCceE--EEEcCCCCcEEEEEEeeeCCE-eeeeeeeeEEECCEE
Q 023864 181 NKLEEFTH-Q---MKDGWG----LATDGKVLFGSD-GSSML--YQIDPQTLKVIRKDIVRYKGR-EVRNLNELEFIKGEV 248 (276)
Q Consensus 181 k~i~~~~~-~---~~EGWG----LT~Dg~~L~vSD-GS~~L--~viDp~t~~vi~~I~V~~~g~-pv~~lNELE~idG~l 248 (276)
+.+.++.. | .+.-|+ +++||++||+|| |-|.| +-+|+.+.++.-.-.+...|+ |-. .| +...++.|
T Consensus 228 ~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~-F~-i~~~g~~L 305 (346)
T COG2706 228 EELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRD-FN-INPSGRFL 305 (346)
T ss_pred EEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCcc-ce-eCCCCCEE
Confidence 44444431 1 245565 889999999999 76655 567999887533222223444 322 11 12335578
Q ss_pred EEEeCCCCC--eEEEEeCCCCcEEE
Q 023864 249 WANVWQVWP--CIPYAYLQAFGSSL 271 (276)
Q Consensus 249 yANvw~s~d--~I~vIDp~T~~v~l 271 (276)
+|+.=.+ | .|..||++||+..+
T Consensus 306 iaa~q~s-d~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 306 IAANQKS-DNITVFERDKETGRLTL 329 (346)
T ss_pred EEEccCC-CcEEEEEEcCCCceEEe
Confidence 8888677 6 45679999988654
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.2e-05 Score=65.72 Aligned_cols=155 Identities=14% Similarity=0.121 Sum_probs=108.3
Q ss_pred CceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEEEEEeeCCEEEEEeCCCCcEEE
Q 023864 106 FTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNKLE 184 (276)
Q Consensus 106 FTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~LyqlTwk~~~v~V~D~~tlk~i~ 184 (276)
....+.+++++.++.+++ .+..|..||+.+++......... -....+.+.. ++++...-.++.+.+||..+.+.+.
T Consensus 95 ~i~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~ 171 (289)
T cd00200 95 YVSSVAFSPDGRILSSSS--RDKTIKVWDVETGKCLTTLRGHT-DWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVA 171 (289)
T ss_pred cEEEEEEcCCCCEEEEec--CCCeEEEEECCCcEEEEEeccCC-CcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccce
Confidence 457899998877776655 57899999999888776655222 1234566665 3444444459999999999998888
Q ss_pred EEecCC--CCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEEC-CEEEEEeCCCCCeEEE
Q 023864 185 EFTHQM--KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIK-GEVWANVWQVWPCIPY 261 (276)
Q Consensus 185 ~~~~~~--~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~id-G~lyANvw~s~d~I~v 261 (276)
.+.... -....+.++++.++++.....|.++|..+.+.+..+.... . .++-+.+.+ +.+++..-.. +.|.+
T Consensus 172 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~--~---~i~~~~~~~~~~~~~~~~~~-~~i~i 245 (289)
T cd00200 172 TLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE--N---GVNSVAFSPDGYLLASGSED-GTIRV 245 (289)
T ss_pred eEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcC--C---ceEEEEEcCCCcEEEEEcCC-CcEEE
Confidence 886431 2334466788889888878999999999988877664322 1 344455665 5666655456 88999
Q ss_pred EeCCCCcE
Q 023864 262 AYLQAFGS 269 (276)
Q Consensus 262 IDp~T~~v 269 (276)
.|..+++.
T Consensus 246 ~~~~~~~~ 253 (289)
T cd00200 246 WDLRTGEC 253 (289)
T ss_pred EEcCCcee
Confidence 99987543
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00012 Score=61.27 Aligned_cols=155 Identities=16% Similarity=0.101 Sum_probs=101.6
Q ss_pred CCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-C-EEEEEEeeCCEEEEEeCCCCcE
Q 023864 105 AFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-E-KLFQVTWLQKTGFIYDQNNLNK 182 (276)
Q Consensus 105 aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~-~LyqlTwk~~~v~V~D~~tlk~ 182 (276)
.-...+.+++++.++.+++ .+..|..||+++++............ ..+.... + .++... .++.+.+||..+.+.
T Consensus 10 ~~i~~~~~~~~~~~l~~~~--~~g~i~i~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~-~~~~i~i~~~~~~~~ 85 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGS--GDGTIKVWDLETGELLRTLKGHTGPV-RDVAASADGTYLASGS-SDKTIRLWDLETGEC 85 (289)
T ss_pred CCEEEEEEcCCCCEEEEee--cCcEEEEEEeeCCCcEEEEecCCcce-eEEEECCCCCEEEEEc-CCCeEEEEEcCcccc
Confidence 3457999999877666555 57899999999988666554433322 2455543 3 454444 589999999999888
Q ss_pred EEEEecCCCCeeE--EeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEEC-CEEEEEeCCCCCeE
Q 023864 183 LEEFTHQMKDGWG--LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIK-GEVWANVWQVWPCI 259 (276)
Q Consensus 183 i~~~~~~~~EGWG--LT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~id-G~lyANvw~s~d~I 259 (276)
+.++......-.. +.++++.++.+.....|.++|..+.+.+..+.... ..++.+.+.. +.+.+..-.. +.|
T Consensus 86 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~~-~~i 159 (289)
T cd00200 86 VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHT-----DWVNSVAFSPDGTFVASSSQD-GTI 159 (289)
T ss_pred eEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCC-----CcEEEEEEcCcCCEEEEEcCC-CcE
Confidence 8777643122333 44565666555558899999999888777766221 1344555654 4444444345 789
Q ss_pred EEEeCCCCcE
Q 023864 260 PYAYLQAFGS 269 (276)
Q Consensus 260 ~vIDp~T~~v 269 (276)
.+.|.++++.
T Consensus 160 ~i~d~~~~~~ 169 (289)
T cd00200 160 KLWDLRTGKC 169 (289)
T ss_pred EEEEcccccc
Confidence 9999887553
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.9e-05 Score=71.72 Aligned_cols=142 Identities=12% Similarity=0.080 Sum_probs=98.8
Q ss_pred CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCC----------ceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEE
Q 023864 116 DTLFESTGLYGRSSVRRVALETGKVEAINQMEGS----------YFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEE 185 (276)
Q Consensus 116 g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~----------~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~ 185 (276)
+.+|.++ ....+..+|+++|+++-+..++.. .+.....+.++++|+.++ ++.++.+|+++.+++-+
T Consensus 191 ~~v~~~~---~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~-~g~l~a~d~~tG~~~W~ 266 (377)
T TIGR03300 191 GGVLVGF---AGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY-QGRVAALDLRSGRVLWK 266 (377)
T ss_pred CEEEEEC---CCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc-CCEEEEEECCCCcEEEe
Confidence 5666433 345899999999988765443211 011123456899999886 67899999999999887
Q ss_pred EecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEE-EeeeCCEeeeeeeeeEEECCEEEEEeCCCCCeEEEEeC
Q 023864 186 FTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKD-IVRYKGREVRNLNELEFIKGEVWANVWQVWPCIPYAYL 264 (276)
Q Consensus 186 ~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I-~V~~~g~pv~~lNELE~idG~lyANvw~s~d~I~vIDp 264 (276)
.+.. ....+..+++.+|+.+....|+.+|+.+++++-+. ... +.....+ ...+++||+.. .+ ..|.++|+
T Consensus 267 ~~~~--~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~--~~~~ssp---~i~g~~l~~~~-~~-G~l~~~d~ 337 (377)
T TIGR03300 267 RDAS--SYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELK--YRQLTAP---AVVGGYLVVGD-FE-GYLHWLSR 337 (377)
T ss_pred eccC--CccCceEeCCEEEEECCCCeEEEEECCCCcEEEcccccc--CCccccC---EEECCEEEEEe-CC-CEEEEEEC
Confidence 7643 22345567899999988899999999999887544 222 1222222 24688999876 56 88999999
Q ss_pred CCCcEE
Q 023864 265 QAFGSS 270 (276)
Q Consensus 265 ~T~~v~ 270 (276)
++|++.
T Consensus 338 ~tG~~~ 343 (377)
T TIGR03300 338 EDGSFV 343 (377)
T ss_pred CCCCEE
Confidence 997654
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.8e-05 Score=73.69 Aligned_cols=162 Identities=17% Similarity=0.240 Sum_probs=104.6
Q ss_pred EEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEe-e----cCCCceEEEEEEeCCEEEEEEee--
Q 023864 96 VNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAIN-Q----MEGSYFGEGLTLLGEKLFQVTWL-- 168 (276)
Q Consensus 96 v~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~-~----l~~~~FgEGit~~g~~LyqlTwk-- 168 (276)
.+.+++ +..|+.|+.++.+|.|+.+- ..++.+|++++..+..+ . .+...+=.|..--.+++|.-|-.
T Consensus 59 ~~~~~~-p~~~~~~~~~d~~g~Lv~~~-----~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~ 132 (307)
T COG3386 59 KRVFPS-PGGFSSGALIDAGGRLIACE-----HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYF 132 (307)
T ss_pred eEEEEC-CCCcccceeecCCCeEEEEc-----cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCcc
Confidence 455665 77888999999878887642 35667777777663322 1 22244445555556788887766
Q ss_pred ---------CCEEEEEeCCCCcEEEEEe--cCCCCeeEEeeCCCEEEEEC-CCceEEEEcCC--CCcEEEEE-Eeee---
Q 023864 169 ---------QKTGFIYDQNNLNKLEEFT--HQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQ--TLKVIRKD-IVRY--- 230 (276)
Q Consensus 169 ---------~~~v~V~D~~tlk~i~~~~--~~~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~--t~~vi~~I-~V~~--- 230 (276)
.+.++.+|+. .++++-+. +..+.|.++++||+.||++| ..++|+.+|-. ++.+-.+. .|..
T Consensus 133 ~~~~~~~~~~G~lyr~~p~-g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~ 211 (307)
T COG3386 133 DLGKSEERPTGSLYRVDPD-GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEE 211 (307)
T ss_pred ccCccccCCcceEEEEcCC-CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCC
Confidence 3568889974 33333221 22358999999999999999 57999998654 44443321 1211
Q ss_pred CCEeeeeeeeeEEE-CCEEE-EEeCCCCCeEEEEeCCCCcEE
Q 023864 231 KGREVRNLNELEFI-KGEVW-ANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 231 ~g~pv~~lNELE~i-dG~ly-ANvw~s~d~I~vIDp~T~~v~ 270 (276)
.|.|=. |..+ +|.|| +.+|.. ..|.+++|+ |+.+
T Consensus 212 ~G~PDG----~~vDadG~lw~~a~~~g-~~v~~~~pd-G~l~ 247 (307)
T COG3386 212 PGLPDG----MAVDADGNLWVAAVWGG-GRVVRFNPD-GKLL 247 (307)
T ss_pred CCCCCc----eEEeCCCCEEEecccCC-ceEEEECCC-CcEE
Confidence 233321 2232 78899 888887 899999999 6654
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=5.3e-05 Score=72.46 Aligned_cols=137 Identities=9% Similarity=0.069 Sum_probs=97.2
Q ss_pred CCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEecCCCCee
Q 023864 115 NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGW 194 (276)
Q Consensus 115 dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~EGW 194 (276)
++++|..+. +..+..+|+++|+++=+.+++.. ..+++.+++||+.+. ++.++.+|+++.+++-+.+......+
T Consensus 256 ~~~vy~~~~---~g~l~ald~~tG~~~W~~~~~~~---~~~~~~~~~vy~~~~-~g~l~ald~~tG~~~W~~~~~~~~~~ 328 (394)
T PRK11138 256 GGVVYALAY---NGNLVALDLRSGQIVWKREYGSV---NDFAVDGGRIYLVDQ-NDRVYALDTRGGVELWSQSDLLHRLL 328 (394)
T ss_pred CCEEEEEEc---CCeEEEEECCCCCEEEeecCCCc---cCcEEECCEEEEEcC-CCeEEEEECCCCcEEEcccccCCCcc
Confidence 578887543 46899999999998776665531 246778999999884 68999999999998776543211112
Q ss_pred E-EeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCCCCeEEEEeC
Q 023864 195 G-LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQVWPCIPYAYL 264 (276)
Q Consensus 195 G-LT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s~d~I~vIDp 264 (276)
. ..-.+..||+.+.+..|+.+|++|++++.+..+...+.. ....+.+|+||+-. .+ ..|..|++
T Consensus 329 ~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~----s~P~~~~~~l~v~t-~~-G~l~~~~~ 393 (394)
T PRK11138 329 TAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFL----SEPVVADDKLLIQA-RD-GTVYAITR 393 (394)
T ss_pred cCCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcce----eCCEEECCEEEEEe-CC-ceEEEEeC
Confidence 2 122467889988888999999999999998888532221 12236788999875 34 57777764
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00021 Score=69.69 Aligned_cols=158 Identities=14% Similarity=0.102 Sum_probs=97.4
Q ss_pred CceEEEEecCCE-E-EEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCC--EEEEEeCCCCc
Q 023864 106 FTQGLLYAENDT-L-FESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK--TGFIYDQNNLN 181 (276)
Q Consensus 106 FTQGL~~~~dg~-L-yeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~--~v~V~D~~tlk 181 (276)
+.....|+|||+ | |.+.. -+...|..+|+++|+......++.....--...+|++|+.+..+++ .++++|.++.+
T Consensus 200 ~~~~p~wSPDG~~la~~s~~-~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~ 278 (429)
T PRK03629 200 PLMSPAWSPDGSKLAYVTFE-SGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ 278 (429)
T ss_pred ceeeeEEcCCCCEEEEEEec-CCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence 445789999985 4 44432 3678899999999986554455544333334446778888766655 59999998876
Q ss_pred EEEEEecC-CCCeeEEeeCCCEE-EEEC--CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCE-E-EEEeCC
Q 023864 182 KLEEFTHQ-MKDGWGLATDGKVL-FGSD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGE-V-WANVWQ 254 (276)
Q Consensus 182 ~i~~~~~~-~~EGWGLT~Dg~~L-~vSD--GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~-l-yANvw~ 254 (276)
...-.... .-.....++||+.| |+|| |..+|+.+|+++.+.. ++.. .+... ....+. ||+ | |++...
T Consensus 279 ~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~--~~~~~---~~~~~SpDG~~Ia~~~~~~ 352 (429)
T PRK03629 279 IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW--EGSQN---QDADVSSDGKFMVMVSSNG 352 (429)
T ss_pred EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec--CCCCc---cCEEECCCCCEEEEEEccC
Confidence 53322211 11234578999976 6787 5679999999987653 3322 22211 112232 554 4 444332
Q ss_pred CCCeEEEEeCCCCcEE
Q 023864 255 VWPCIPYAYLQAFGSS 270 (276)
Q Consensus 255 s~d~I~vIDp~T~~v~ 270 (276)
....|.++|+++++..
T Consensus 353 g~~~I~~~dl~~g~~~ 368 (429)
T PRK03629 353 GQQHIAKQDLATGGVQ 368 (429)
T ss_pred CCceEEEEECCCCCeE
Confidence 2146899999987643
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0002 Score=66.07 Aligned_cols=158 Identities=18% Similarity=0.208 Sum_probs=98.6
Q ss_pred ceEEEEecC-CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEe-eCCEEEEEeCC--CC--
Q 023864 107 TQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW-LQKTGFIYDQN--NL-- 180 (276)
Q Consensus 107 TQGL~~~~d-g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTw-k~~~v~V~D~~--tl-- 180 (276)
.-||+|++| ++||.-++ +...|..+|+ +|++++++++...-=.|||+..++..|+++- +.+.+++++.. +.
T Consensus 24 ~SGLTy~pd~~tLfaV~d--~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQD--EPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp EEEEEEETTTTEEEEEET--TTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT-
T ss_pred ccccEEcCCCCeEEEEEC--CCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccccc
Confidence 689999987 78998887 7899999998 5999999998863225999999876666655 58889888772 21
Q ss_pred c--EEEEEecC-------CCCeeEEeeCCCEEEEEC-C-CceEEEEcC--CCC--cEEEEEEeeeCCEeeeeeeeeEEE-
Q 023864 181 N--KLEEFTHQ-------MKDGWGLATDGKVLFGSD-G-SSMLYQIDP--QTL--KVIRKDIVRYKGREVRNLNELEFI- 244 (276)
Q Consensus 181 k--~i~~~~~~-------~~EGWGLT~Dg~~L~vSD-G-S~~L~viDp--~t~--~vi~~I~V~~~g~pv~~lNELE~i- 244 (276)
. ...+++.+ .-||.+..+.+++||+.- . -..|+-++. ..+ .+.....+...+..+..+-.+.+.
T Consensus 101 ~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p 180 (248)
T PF06977_consen 101 DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDP 180 (248)
T ss_dssp -EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEET
T ss_pred chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcC
Confidence 1 12334422 127777777788999876 3 336788874 222 233232333344555667777777
Q ss_pred -CCEEEEEeCCCCCeEEEEeCCCCcE
Q 023864 245 -KGEVWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 245 -dG~lyANvw~s~d~I~vIDp~T~~v 269 (276)
.|.+|+=--.+ ..|+++| .+|++
T Consensus 181 ~t~~lliLS~es-~~l~~~d-~~G~~ 204 (248)
T PF06977_consen 181 RTGHLLILSDES-RLLLELD-RQGRV 204 (248)
T ss_dssp TTTEEEEEETTT-TEEEEE--TT--E
T ss_pred CCCeEEEEECCC-CeEEEEC-CCCCE
Confidence 46899888788 9999999 55453
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00016 Score=69.55 Aligned_cols=174 Identities=16% Similarity=0.144 Sum_probs=111.5
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCE-EEEEcCCCCCCeEEEEeCCC-CcEEEEee----cC---------CCceEEEEE
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALET-GKVEAINQ----ME---------GSYFGEGLT 156 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~t-gkv~~~~~----l~---------~~~FgEGit 156 (276)
..+.++..+.+..+ +--+.++++|+ ||+ ..|...+|+++-+.+ |.+...+. .+ ++.-...+|
T Consensus 77 ~Lt~ln~~~~~g~~-p~yvsvd~~g~~vf~--AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~t 153 (346)
T COG2706 77 RLTFLNRQTLPGSP-PCYVSVDEDGRFVFV--ANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFT 153 (346)
T ss_pred eEEEeeccccCCCC-CeEEEECCCCCEEEE--EEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeC
Confidence 44566666553222 24588898886 553 369999999999855 65433221 11 124557899
Q ss_pred EeCCEEEEEEeeCCEEEEEeCCCCcEEEEEecCCCCeeE-----EeeCCCEEEEECC-CceEEEE--cCCC--CcEEEEE
Q 023864 157 LLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWG-----LATDGKVLFGSDG-SSMLYQI--DPQT--LKVIRKD 226 (276)
Q Consensus 157 ~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~EGWG-----LT~Dg~~L~vSDG-S~~L~vi--Dp~t--~~vi~~I 226 (276)
.+++.|++..-..+++++||.+..+....-+...++|.| +.|+|+..|+-+- +++|.++ |+.. ++.+.+|
T Consensus 154 P~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i 233 (346)
T COG2706 154 PDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTI 233 (346)
T ss_pred CCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeee
Confidence 999999999999999999999976665443332234544 8899999999774 7766665 5543 3334444
Q ss_pred Eeee---CCEeeeeeeeeEEE-CC-EEEEEeCCCCCeEE--EEeCCCCcEEE
Q 023864 227 IVRY---KGREVRNLNELEFI-KG-EVWANVWQVWPCIP--YAYLQAFGSSL 271 (276)
Q Consensus 227 ~V~~---~g~pv~~lNELE~i-dG-~lyANvw~s~d~I~--vIDp~T~~v~l 271 (276)
.+-. .|.. ..-++-.. || +|||.+-.- |.|+ .||+.+|+..+
T Consensus 234 ~tlP~dF~g~~--~~aaIhis~dGrFLYasNRg~-dsI~~f~V~~~~g~L~~ 282 (346)
T COG2706 234 DTLPEDFTGTN--WAAAIHISPDGRFLYASNRGH-DSIAVFSVDPDGGKLEL 282 (346)
T ss_pred ccCccccCCCC--ceeEEEECCCCCEEEEecCCC-CeEEEEEEcCCCCEEEE
Confidence 4422 1111 11122222 66 599999888 8665 58999977444
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00022 Score=67.60 Aligned_cols=156 Identities=19% Similarity=0.159 Sum_probs=92.4
Q ss_pred CceEEEEecCCE-E-EEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeC--CEEEEEeCCCCc
Q 023864 106 FTQGLLYAENDT-L-FESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ--KTGFIYDQNNLN 181 (276)
Q Consensus 106 FTQGL~~~~dg~-L-yeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~--~~v~V~D~~tlk 181 (276)
.+....+++||+ | |.+.+ -+...|.++|+++|+.......+...++-.+..++++|+.....+ ..++++|.++.+
T Consensus 191 ~~~~p~~Spdg~~la~~~~~-~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~ 269 (417)
T TIGR02800 191 PILSPAWSPDGQKLAYVSFE-SGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ 269 (417)
T ss_pred ceecccCCCCCCEEEEEEcC-CCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC
Confidence 344667889875 4 33322 245789999999997765555554445444555667787665544 369999998765
Q ss_pred EEEEEecCC-CCeeEEeeCCCEE-EEEC--CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCE-EEEEeCCC
Q 023864 182 KLEEFTHQM-KDGWGLATDGKVL-FGSD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGE-VWANVWQV 255 (276)
Q Consensus 182 ~i~~~~~~~-~EGWGLT~Dg~~L-~vSD--GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~-lyANvw~s 255 (276)
...-..... ...-..++||++| +.+| |...|+++|.++.+.. ++... +.. .....+. ||+ |+... ..
T Consensus 270 ~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~--~~~---~~~~~~spdg~~i~~~~-~~ 342 (417)
T TIGR02800 270 LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFR--GGY---NASPSWSPDGDLIAFVH-RE 342 (417)
T ss_pred EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecC--CCC---ccCeEECCCCCEEEEEE-cc
Confidence 432222111 1122457899877 4566 5679999999887753 33322 211 1122333 554 44332 22
Q ss_pred --CCeEEEEeCCCCcE
Q 023864 256 --WPCIPYAYLQAFGS 269 (276)
Q Consensus 256 --~d~I~vIDp~T~~v 269 (276)
...|.++|++++..
T Consensus 343 ~~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 343 GGGFNIAVMDLDGGGE 358 (417)
T ss_pred CCceEEEEEeCCCCCe
Confidence 02899999988654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.5e-05 Score=73.37 Aligned_cols=114 Identities=17% Similarity=0.194 Sum_probs=82.5
Q ss_pred CEEEEEEe----eCCEEEEEeCCCCcEEEEEecCCCCeeEEeeCCCEEEEEC-----C-----CceEEEEcCCCCcEEEE
Q 023864 160 EKLFQVTW----LQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSD-----G-----SSMLYQIDPQTLKVIRK 225 (276)
Q Consensus 160 ~~LyqlTw----k~~~v~V~D~~tlk~i~~~~~~~~EGWGLT~Dg~~L~vSD-----G-----S~~L~viDp~t~~vi~~ 225 (276)
.|+|++.- -.++++|||.++.+.++.++.+.--+..+++||+.+|+.+ | ++-|.++|++|++.+++
T Consensus 3 ~rvyV~D~~~~~~~~rv~viD~d~~k~lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~E 82 (342)
T PF06433_consen 3 HRVYVQDPVFFHMTSRVYVIDADSGKLLGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGE 82 (342)
T ss_dssp TEEEEEE-GGGGSSEEEEEEETTTTEEEEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEE
T ss_pred cEEEEECCccccccceEEEEECCCCcEEEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccce
Confidence 57787776 2369999999999999999976445677999999999865 2 78999999999999999
Q ss_pred EEeeeCCEe--eeeeeeeEEE-CC-EEE-EEeCCCCCeEEEEeCCCCcEEEEEEe
Q 023864 226 DIVRYKGRE--VRNLNELEFI-KG-EVW-ANVWQVWPCIPYAYLQAFGSSLVYVT 275 (276)
Q Consensus 226 I~V~~~g~p--v~~lNELE~i-dG-~ly-ANvw~s~d~I~vIDp~T~~v~l~~~~ 275 (276)
|..-...+. ....|-+... || ++| .|.=.. ..|.|||.+.+++ +.+|.
T Consensus 83 I~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa-~SVtVVDl~~~kv-v~ei~ 135 (342)
T PF06433_consen 83 IEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPA-TSVTVVDLAAKKV-VGEID 135 (342)
T ss_dssp EEETTS-B--BS--GGGEEE-TTSSEEEEEEESSS-EEEEEEETTTTEE-EEEEE
T ss_pred EecCCcchheecccccceEEccCCcEEEEEccCCC-CeEEEEECCCCce-eeeec
Confidence 999754232 2233434443 44 577 555556 8999999999555 56663
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00011 Score=69.70 Aligned_cols=141 Identities=18% Similarity=0.206 Sum_probs=100.9
Q ss_pred EEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC--CceEEEEEEeCCEEEEEEee-----CCEEEEEeCC-CC
Q 023864 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG--SYFGEGLTLLGEKLFQVTWL-----QKTGFIYDQN-NL 180 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~--~~FgEGit~~g~~LyqlTwk-----~~~v~V~D~~-tl 180 (276)
|++.+|++...+.-++.=.....++|..+|++.+.+.-++ ++||-|+--.++++.-.|.. .+.+-|||.+ ++
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~ 88 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY 88 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence 6777775433333445556778899999999988875554 68998887765444444543 4788999998 99
Q ss_pred cEEEEEecCCCCeeE-----EeeCCCEEEEECC---Cc---------------eEEEEcCCCCcEEEEEEee--eCCEee
Q 023864 181 NKLEEFTHQMKDGWG-----LATDGKVLFGSDG---SS---------------MLYQIDPQTLKVIRKDIVR--YKGREV 235 (276)
Q Consensus 181 k~i~~~~~~~~EGWG-----LT~Dg~~L~vSDG---S~---------------~L~viDp~t~~vi~~I~V~--~~g~pv 235 (276)
+.+++|+. .|.| +.+||+.|+|.|| +. .|..+|+.+++++.+.... +....+
T Consensus 89 ~ri~E~~s---~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 89 RRIGEFPS---HGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI 165 (305)
T ss_pred EEEeEecC---CCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence 99999985 3555 6899999999996 22 7899999999999998883 333345
Q ss_pred eeeeeeEEE-CCEEE-EEeCCC
Q 023864 236 RNLNELEFI-KGEVW-ANVWQV 255 (276)
Q Consensus 236 ~~lNELE~i-dG~ly-ANvw~s 255 (276)
.+|- +. +|.++ +--|+-
T Consensus 166 RHLa---~~~~G~V~~a~Q~qg 184 (305)
T PF07433_consen 166 RHLA---VDGDGTVAFAMQYQG 184 (305)
T ss_pred eeEE---ecCCCcEEEEEecCC
Confidence 5552 33 56655 666664
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.06 E-value=8.7e-05 Score=70.06 Aligned_cols=160 Identities=17% Similarity=0.102 Sum_probs=108.1
Q ss_pred EEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC--CceEEEEEEe-CCEEEEEEeeCCEE
Q 023864 96 VNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG--SYFGEGLTLL-GEKLFQVTWLQKTG 172 (276)
Q Consensus 96 v~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~--~~FgEGit~~-g~~LyqlTwk~~~v 172 (276)
.++||.+...=+.-+..++||.+|. |++ |...|-++|+.||++ .+++|+. ++| ||.+. ++-.|++.--. -+
T Consensus 53 ~~~fpvp~G~ap~dvapapdG~VWf-t~q-g~gaiGhLdP~tGev-~~ypLg~Ga~Ph--giv~gpdg~~Witd~~~-aI 126 (353)
T COG4257 53 SAEFPVPNGSAPFDVAPAPDGAVWF-TAQ-GTGAIGHLDPATGEV-ETYPLGSGASPH--GIVVGPDGSAWITDTGL-AI 126 (353)
T ss_pred cceeccCCCCCccccccCCCCceEE-ecC-ccccceecCCCCCce-EEEecCCCCCCc--eEEECCCCCeeEecCcc-ee
Confidence 4678887776666889999998776 443 888999999999998 5678885 556 55554 35677776444 77
Q ss_pred EEEeCCCCcEEEEEecCCCCeeE-E---eeCC-CEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEE-ECC
Q 023864 173 FIYDQNNLNKLEEFTHQMKDGWG-L---ATDG-KVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEF-IKG 246 (276)
Q Consensus 173 ~V~D~~tlk~i~~~~~~~~EGWG-L---T~Dg-~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~-idG 246 (276)
-.+|++|++. ++|+.+...+.+ | .-|+ ..||.+-....---+||.+. +++...+-.++.|.. +.. -||
T Consensus 127 ~R~dpkt~ev-t~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~-~i~vfpaPqG~gpyG----i~atpdG 200 (353)
T COG4257 127 GRLDPKTLEV-TRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARN-VISVFPAPQGGGPYG----ICATPDG 200 (353)
T ss_pred EEecCcccce-EEeecccccCCCcccceeeCCCccEEEeeccccceecCcccC-ceeeeccCCCCCCcc----eEECCCC
Confidence 7899999987 567655222222 2 1122 35666543333346898876 444455544444433 222 389
Q ss_pred EEEEEeCCCCCeEEEEeCCCCc
Q 023864 247 EVWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 247 ~lyANvw~s~d~I~vIDp~T~~ 268 (276)
+||..-.+. |.|.+|||.++.
T Consensus 201 svwyaslag-naiaridp~~~~ 221 (353)
T COG4257 201 SVWYASLAG-NAIARIDPFAGH 221 (353)
T ss_pred cEEEEeccc-cceEEcccccCC
Confidence 999999899 999999999974
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00051 Score=67.73 Aligned_cols=166 Identities=13% Similarity=0.086 Sum_probs=116.3
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEEEEEeeCCEE
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTG 172 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~LyqlTwk~~~v 172 (276)
..++++. +...+.-.+.|+++|+++.|++ ++..|++||.++|+.....+.-.. .--++++.. ++++...-+++.+
T Consensus 237 ~~~~~l~-gH~~~v~~~~f~p~g~~i~Sgs--~D~tvriWd~~~~~~~~~l~~hs~-~is~~~f~~d~~~l~s~s~d~~i 312 (456)
T KOG0266|consen 237 RNLKTLK-GHSTYVTSVAFSPDGNLLVSGS--DDGTVRIWDVRTGECVRKLKGHSD-GISGLAFSPDGNLLVSASYDGTI 312 (456)
T ss_pred eEEEEec-CCCCceEEEEecCCCCEEEEec--CCCcEEEEeccCCeEEEeeeccCC-ceEEEEECCCCCEEEEcCCCccE
Confidence 5566664 3477778999999999999888 899999999999999888765543 334555543 4444444569999
Q ss_pred EEEeCCCCc--EEEEEecC-CC---CeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCC-Eee-eeeeeeEEE
Q 023864 173 FIYDQNNLN--KLEEFTHQ-MK---DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKG-REV-RNLNELEFI 244 (276)
Q Consensus 173 ~V~D~~tlk--~i~~~~~~-~~---EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g-~pv-~~lNELE~i 244 (276)
.+||..+.+ .++++.-. .+ --.-.+++|++|++.-....|..+|..+.+..+......++ ..+ .... ..
T Consensus 313 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~---~~ 389 (456)
T KOG0266|consen 313 RVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTL---ST 389 (456)
T ss_pred EEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccc---cC
Confidence 999999999 44655422 11 11226789999999888889999999999888877765544 111 1111 22
Q ss_pred CCE-EEEEeCCCCCeEEEEeCCCCc
Q 023864 245 KGE-VWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 245 dG~-lyANvw~s~d~I~vIDp~T~~ 268 (276)
+|+ ++... .. ..|.+-|+.++.
T Consensus 390 ~~~~i~sg~-~d-~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 390 GGKLIYSGS-ED-GSVYVWDSSSGG 412 (456)
T ss_pred CCCeEEEEe-CC-ceEEEEeCCccc
Confidence 554 44443 45 789999999844
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00043 Score=68.11 Aligned_cols=154 Identities=16% Similarity=0.112 Sum_probs=93.8
Q ss_pred EEEEecCCE-E-EEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCC--EEEEEeCCCCcEEE
Q 023864 109 GLLYAENDT-L-FESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK--TGFIYDQNNLNKLE 184 (276)
Q Consensus 109 GL~~~~dg~-L-yeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~--~v~V~D~~tlk~i~ 184 (276)
...|+|||+ | |.+.. .|...|.++|+++|+.......+...+.-....+|++|+....+++ .++++|.++.+..
T Consensus 222 ~p~wSPDG~~La~~s~~-~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~- 299 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFE-NRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT- 299 (448)
T ss_pred CceECCCCCEEEEEEec-CCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-
Confidence 578999975 4 44432 3678899999999986544444443333344556778877666665 5899999877643
Q ss_pred EEecC--CCCeeEEeeCCCEEEE-EC--CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CC-EEE-EEeCCCC
Q 023864 185 EFTHQ--MKDGWGLATDGKVLFG-SD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVW-ANVWQVW 256 (276)
Q Consensus 185 ~~~~~--~~EGWGLT~Dg~~L~v-SD--GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG-~ly-ANvw~s~ 256 (276)
++... ....-..++||++|++ ++ |..+|+.+|+++.+.. ++.. ++... ....+. || +|+ ++.-...
T Consensus 300 ~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~--~g~~~---~~~~~SpDG~~l~~~~~~~g~ 373 (448)
T PRK04792 300 RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS-RLTF--EGEQN---LGGSITPDGRSMIMVNRTNGK 373 (448)
T ss_pred ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EEec--CCCCC---cCeeECCCCCEEEEEEecCCc
Confidence 33211 1122346789998755 65 6789999999988754 3332 22111 112233 55 454 3332211
Q ss_pred CeEEEEeCCCCcEE
Q 023864 257 PCIPYAYLQAFGSS 270 (276)
Q Consensus 257 d~I~vIDp~T~~v~ 270 (276)
..|.++|+++++..
T Consensus 374 ~~I~~~dl~~g~~~ 387 (448)
T PRK04792 374 FNIARQDLETGAMQ 387 (448)
T ss_pred eEEEEEECCCCCeE
Confidence 47899999997653
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0005 Score=66.84 Aligned_cols=156 Identities=19% Similarity=0.211 Sum_probs=92.7
Q ss_pred CceEEEEecCCE-E-EEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeC--CEEEEEeCCCCc
Q 023864 106 FTQGLLYAENDT-L-FESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ--KTGFIYDQNNLN 181 (276)
Q Consensus 106 FTQGL~~~~dg~-L-yeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~--~~v~V~D~~tlk 181 (276)
..-...|+|||+ | |.+ ...|...|..+|+++|+...-...+....+-....+|++|+...-++ ..++++|.++.+
T Consensus 203 ~v~~p~wSpDG~~lay~s-~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~ 281 (435)
T PRK05137 203 LVLTPRFSPNRQEITYMS-YANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT 281 (435)
T ss_pred CeEeeEECCCCCEEEEEE-ecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc
Confidence 445688999975 4 444 22367899999999998654434443333333445577776554443 458999998866
Q ss_pred EEEEEecC--CCCeeEEeeCCCEE-EEEC--CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CC-EE-EEEeC
Q 023864 182 KLEEFTHQ--MKDGWGLATDGKVL-FGSD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EV-WANVW 253 (276)
Q Consensus 182 ~i~~~~~~--~~EGWGLT~Dg~~L-~vSD--GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG-~l-yANvw 253 (276)
. .++... ....-..++||++| |+|| |..+|+++|.++.++. ++.-.. + ..+...|. || +| |+...
T Consensus 282 ~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~-~----~~~~~~~SpdG~~ia~~~~~ 354 (435)
T PRK05137 282 T-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGG-G----RYSTPVWSPRGDLIAFTKQG 354 (435)
T ss_pred e-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCC-C----cccCeEECCCCCEEEEEEcC
Confidence 5 333321 01123467899876 5576 5779999998876653 343221 1 12223343 55 44 44432
Q ss_pred CCCCeEEEEeCCCCcE
Q 023864 254 QVWPCIPYAYLQAFGS 269 (276)
Q Consensus 254 ~s~d~I~vIDp~T~~v 269 (276)
.....|.++|++++.+
T Consensus 355 ~~~~~i~~~d~~~~~~ 370 (435)
T PRK05137 355 GGQFSIGVMKPDGSGE 370 (435)
T ss_pred CCceEEEEEECCCCce
Confidence 2214799999877554
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0012 Score=62.69 Aligned_cols=173 Identities=16% Similarity=0.115 Sum_probs=119.1
Q ss_pred eeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEEEEEeeC
Q 023864 91 YTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQ 169 (276)
Q Consensus 91 ~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~LyqlTwk~ 169 (276)
++=+-|+.+|- .+.-+-.|..+|-+-.|.|++ -+.+|+.||+.+-+-.....+..++- +|.+. +-+|.+--.+
T Consensus 88 ~dNkylRYF~G-H~~~V~sL~~sP~~d~FlS~S--~D~tvrLWDlR~~~cqg~l~~~~~pi---~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 88 HDNKYLRYFPG-HKKRVNSLSVSPKDDTFLSSS--LDKTVRLWDLRVKKCQGLLNLSGRPI---AAFDPEGLIFALANGS 161 (311)
T ss_pred ecCceEEEcCC-CCceEEEEEecCCCCeEEecc--cCCeEEeeEecCCCCceEEecCCCcc---eeECCCCcEEEEecCC
Confidence 44467777873 567778999999777888888 67799999999766545555555533 34443 6778888888
Q ss_pred CEEEEEeCCCC--cEEEEEecC--CC---CeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeE
Q 023864 170 KTGFIYDQNNL--NKLEEFTHQ--MK---DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELE 242 (276)
Q Consensus 170 ~~v~V~D~~tl--k~i~~~~~~--~~---EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE 242 (276)
+.+.+||...+ .+..+|.++ .. ++.-+++|||.+.+|...+.++++|+=+++++.+.....++..+. -|..
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~--~~a~ 239 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLP--LSAT 239 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcc--eeEE
Confidence 89999999877 355666654 11 233489999999999999999999999999988888865443222 1222
Q ss_pred E-ECCEEEEEeCCCCCeEEEEeCCCCcEEEE
Q 023864 243 F-IKGEVWANVWQVWPCIPYAYLQAFGSSLV 272 (276)
Q Consensus 243 ~-idG~lyANvw~s~d~I~vIDp~T~~v~l~ 272 (276)
+ -||+-....-.. .+|.+=+.+||..+..
T Consensus 240 ftPds~Fvl~gs~d-g~i~vw~~~tg~~v~~ 269 (311)
T KOG1446|consen 240 FTPDSKFVLSGSDD-GTIHVWNLETGKKVAV 269 (311)
T ss_pred ECCCCcEEEEecCC-CcEEEEEcCCCcEeeE
Confidence 3 255433333333 5666666666665543
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00032 Score=69.75 Aligned_cols=156 Identities=13% Similarity=0.079 Sum_probs=104.4
Q ss_pred EEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCC-------ceEEEEEEeC-CEEEEEEeeCCEEEEEeCCCCc
Q 023864 110 LLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGS-------YFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLN 181 (276)
Q Consensus 110 L~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~-------~FgEGit~~g-~~LyqlTwk~~~v~V~D~~tlk 181 (276)
-.+. ++++|..+. +..|..+|.+||+++=+.++... .+..|+++.+ +++|+.+. ++.++.+|++|.+
T Consensus 57 Pvv~-~g~vy~~~~---~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~-~g~v~AlD~~TG~ 131 (488)
T cd00216 57 PLVV-DGDMYFTTS---HSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF-DGRLVALDAETGK 131 (488)
T ss_pred CEEE-CCEEEEeCC---CCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-CCeEEEEECCCCC
Confidence 3455 689998655 37899999999998777655432 2455677777 99999885 6899999999999
Q ss_pred EEEEEecCCC--CeeEE----eeCCCEEEEEC---------CCceEEEEcCCCCcEEEEEEeeeC-CEeee---------
Q 023864 182 KLEEFTHQMK--DGWGL----ATDGKVLFGSD---------GSSMLYQIDPQTLKVIRKDIVRYK-GREVR--------- 236 (276)
Q Consensus 182 ~i~~~~~~~~--EGWGL----T~Dg~~L~vSD---------GS~~L~viDp~t~~vi~~I~V~~~-g~pv~--------- 236 (276)
++-++..... .++++ +-++..+|+.. ....|+-+|++|++++=+...... .....
T Consensus 132 ~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~ 211 (488)
T cd00216 132 QVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMW 211 (488)
T ss_pred EeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCccee
Confidence 9999986522 23332 23456777743 146899999999998766555311 00000
Q ss_pred ------eeeeeEEE--CCEEEEEeC-----------------CCCCeEEEEeCCCCcEEE
Q 023864 237 ------NLNELEFI--KGEVWANVW-----------------QVWPCIPYAYLQAFGSSL 271 (276)
Q Consensus 237 ------~lNELE~i--dG~lyANvw-----------------~s~d~I~vIDp~T~~v~l 271 (276)
..+-..+. +|.||+..- .+ +.|..+|.+||++.=
T Consensus 212 ~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~-~~l~Ald~~tG~~~W 270 (488)
T cd00216 212 GPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYT-DSIVALDADTGKVKW 270 (488)
T ss_pred cCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCce-eeEEEEcCCCCCEEE
Confidence 00112232 577887752 12 479999999998753
|
The alignment model contains an 8-bladed beta-propeller. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00094 Score=66.40 Aligned_cols=160 Identities=14% Similarity=0.092 Sum_probs=106.6
Q ss_pred CceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCc-----eEEEEEEeCCEEEEEEe--------eCCEE
Q 023864 106 FTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSY-----FGEGLTLLGEKLFQVTW--------LQKTG 172 (276)
Q Consensus 106 FTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~-----FgEGit~~g~~LyqlTw--------k~~~v 172 (276)
...|+.+.+++++|.++. +..|..+|.+||+++=+..++... +..+.++.++.+|+-+. ..+.+
T Consensus 101 ~~~g~~~~~~~~V~v~~~---~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v 177 (488)
T cd00216 101 VNRGVAYWDPRKVFFGTF---DGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGAL 177 (488)
T ss_pred ccCCcEEccCCeEEEecC---CCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEE
Confidence 456776663378997654 579999999999998888776542 33456777889988764 35789
Q ss_pred EEEeCCCCcEEEEEecCCCC-----e---------------eE-Ee--eCCCEEEEECCC------------------ce
Q 023864 173 FIYDQNNLNKLEEFTHQMKD-----G---------------WG-LA--TDGKVLFGSDGS------------------SM 211 (276)
Q Consensus 173 ~V~D~~tlk~i~~~~~~~~E-----G---------------WG-LT--~Dg~~L~vSDGS------------------~~ 211 (276)
+.+|++|.+++-+++...++ . |+ .+ +.+..+|+..+. +.
T Consensus 178 ~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~ 257 (488)
T cd00216 178 RAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDS 257 (488)
T ss_pred EEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceee
Confidence 99999999999888753111 1 21 22 236778885432 38
Q ss_pred EEEEcCCCCcEEEEEEeeeC------CEeeeeeeeeEEECCE----EEEEeCCCCCeEEEEeCCCCcEE
Q 023864 212 LYQIDPQTLKVIRKDIVRYK------GREVRNLNELEFIKGE----VWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 212 L~viDp~t~~vi~~I~V~~~------g~pv~~lNELE~idG~----lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
|+-+|++|++++=+..+... +..-..+-++.-++|. ||+.. .+ ..+..+|++||+++
T Consensus 258 l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~-~~-G~l~ald~~tG~~~ 324 (488)
T cd00216 258 IVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAP-KN-GFFYVLDRTTGKLI 324 (488)
T ss_pred EEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEEC-CC-ceEEEEECCCCcEe
Confidence 99999999999865554321 1111112222224553 66665 34 68999999998865
|
The alignment model contains an 8-bladed beta-propeller. |
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00069 Score=65.88 Aligned_cols=157 Identities=16% Similarity=0.104 Sum_probs=92.5
Q ss_pred eEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCC--EEEEEeCCCCcEEE
Q 023864 108 QGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK--TGFIYDQNNLNKLE 184 (276)
Q Consensus 108 QGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~--~v~V~D~~tlk~i~ 184 (276)
....|+|||+ |+...-.-+...|.++|+++|+.......+....+--+..+|++|+....+++ .++++|.++.+...
T Consensus 207 ~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~ 286 (433)
T PRK04922 207 LSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR 286 (433)
T ss_pred ccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE
Confidence 4678899975 44332222567899999999986544444433332233445678876666555 69999998876532
Q ss_pred EEecC-CCCeeEEeeCCCEEE-EEC--CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CC-EEEEEeCCC-CC
Q 023864 185 EFTHQ-MKDGWGLATDGKVLF-GSD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVWANVWQV-WP 257 (276)
Q Consensus 185 ~~~~~-~~EGWGLT~Dg~~L~-vSD--GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG-~lyANvw~s-~d 257 (276)
-.... ....-.+++||++|+ .|| |..+|+.+|.++.+.. ++.. ++.. .....|. || +|+...-.. ..
T Consensus 287 lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~--~g~~---~~~~~~SpDG~~Ia~~~~~~~~~ 360 (433)
T PRK04922 287 LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTF--QGNY---NARASVSPDGKKIAMVHGSGGQY 360 (433)
T ss_pred CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-Eeec--CCCC---ccCEEECCCCCEEEEEECCCCce
Confidence 21211 112235788999765 576 5678999999887643 3432 2211 1123444 55 454332121 02
Q ss_pred eEEEEeCCCCcEE
Q 023864 258 CIPYAYLQAFGSS 270 (276)
Q Consensus 258 ~I~vIDp~T~~v~ 270 (276)
.|.++|+++++..
T Consensus 361 ~I~v~d~~~g~~~ 373 (433)
T PRK04922 361 RIAVMDLSTGSVR 373 (433)
T ss_pred eEEEEECCCCCeE
Confidence 6999999887643
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0014 Score=63.18 Aligned_cols=156 Identities=18% Similarity=0.151 Sum_probs=91.4
Q ss_pred ceEEEEecCCE-E-EEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCC--EEEEEeCCCCcE
Q 023864 107 TQGLLYAENDT-L-FESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK--TGFIYDQNNLNK 182 (276)
Q Consensus 107 TQGL~~~~dg~-L-yeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~--~v~V~D~~tlk~ 182 (276)
.....|+|||+ | |.+.. .+...|.++|+++|+...-...+.....-....+|++|+....+++ .++++|.++.+.
T Consensus 201 ~~~p~wSpDG~~la~~s~~-~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~ 279 (430)
T PRK00178 201 ILSPRWSPDGKRIAYVSFE-QKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL 279 (430)
T ss_pred eeeeeECCCCCEEEEEEcC-CCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe
Confidence 34668899974 5 54432 3567899999999976543333332222233445678876665554 799999988765
Q ss_pred EEEEe-cC-CCCeeEEeeCCCEE-EEEC--CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CC-EEE-EEeCC
Q 023864 183 LEEFT-HQ-MKDGWGLATDGKVL-FGSD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVW-ANVWQ 254 (276)
Q Consensus 183 i~~~~-~~-~~EGWGLT~Dg~~L-~vSD--GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG-~ly-ANvw~ 254 (276)
. ++. .. ....-..++||+.| |.|| |..+|+.+|.++.++. ++... +.. .....+. || +|+ .+.-.
T Consensus 280 ~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~--~~~---~~~~~~Spdg~~i~~~~~~~ 352 (430)
T PRK00178 280 S-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFV--GNY---NARPRLSADGKTLVMVHRQD 352 (430)
T ss_pred E-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecC--CCC---ccceEECCCCCEEEEEEccC
Confidence 3 332 11 11122467899876 4566 5779999999988754 33321 111 0112232 44 444 33322
Q ss_pred CCCeEEEEeCCCCcEE
Q 023864 255 VWPCIPYAYLQAFGSS 270 (276)
Q Consensus 255 s~d~I~vIDp~T~~v~ 270 (276)
....|.++|+++++..
T Consensus 353 ~~~~l~~~dl~tg~~~ 368 (430)
T PRK00178 353 GNFHVAAQDLQRGSVR 368 (430)
T ss_pred CceEEEEEECCCCCEE
Confidence 1136999999997653
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0049 Score=63.19 Aligned_cols=127 Identities=11% Similarity=0.055 Sum_probs=85.8
Q ss_pred CCCceEEEEecC-CEEEEEcCCCCCCeEEEEeCCCCcE-EEE-----eecCCC-ceEEEEEEeC--CEEEEEEeeCCEEE
Q 023864 104 RAFTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKV-EAI-----NQMEGS-YFGEGLTLLG--EKLFQVTWLQKTGF 173 (276)
Q Consensus 104 ~aFTQGL~~~~d-g~LyeStG~yg~S~I~~iDl~tgkv-~~~-----~~l~~~-~FgEGit~~g--~~LyqlTwk~~~v~ 173 (276)
...+..+.|+|+ +.++.|+| .+..|+.||+.++.. ... ..+..+ ---..+.+.. ..+....-.++++.
T Consensus 74 ~~~V~~lafsP~~~~lLASgS--~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIr 151 (568)
T PTZ00420 74 TSSILDLQFNPCFSEILASGS--EDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVN 151 (568)
T ss_pred CCCEEEEEEcCCCCCEEEEEe--CCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEE
Confidence 456689999986 67777777 788999999987531 111 012211 1123445543 34444556789999
Q ss_pred EEeCCCCcEEEEEecC-CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCC
Q 023864 174 IYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKG 232 (276)
Q Consensus 174 V~D~~tlk~i~~~~~~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g 232 (276)
+||..+.+.+.++..+ .-....+.+||..|..+.....|.++|+.+.+.+.++....++
T Consensus 152 IWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~ 211 (568)
T PTZ00420 152 IWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGG 211 (568)
T ss_pred EEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCC
Confidence 9999999887777643 1133445789998877655678999999999988777655433
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0012 Score=63.67 Aligned_cols=101 Identities=20% Similarity=0.272 Sum_probs=78.2
Q ss_pred CCeEEEEeCCCCcEEEEeecCCCceEE-EEEEeCCEEEEEEe---------eCCEEEEEeCCCCcEEEEEecCCC-----
Q 023864 127 RSSVRRVALETGKVEAINQMEGSYFGE-GLTLLGEKLFQVTW---------LQKTGFIYDQNNLNKLEEFTHQMK----- 191 (276)
Q Consensus 127 ~S~I~~iDl~tgkv~~~~~l~~~~FgE-Git~~g~~LyqlTw---------k~~~v~V~D~~tlk~i~~~~~~~~----- 191 (276)
.+++.++|.+++|++..++.+ ++|- -++.+++.+|+++- +.+.+.+||.+||++.+++..|.+
T Consensus 16 ~~rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 16 TSRVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp SEEEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B
T ss_pred cceEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee
Confidence 368999999999998887654 3333 12334789998653 557899999999999999876621
Q ss_pred ----CeeEEeeCCCEEEEECC--CceEEEEcCCCCcEEEEEEee
Q 023864 192 ----DGWGLATDGKVLFGSDG--SSMLYQIDPQTLKVIRKDIVR 229 (276)
Q Consensus 192 ----EGWGLT~Dg~~L~vSDG--S~~L~viDp~t~~vi~~I~V~ 229 (276)
.=-+|+.||+++|+-|- +..|.++|.+..+++++|.+-
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P 137 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP 137 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT
T ss_pred cccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC
Confidence 12358899999999994 889999999999999999884
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0004 Score=65.66 Aligned_cols=158 Identities=14% Similarity=0.172 Sum_probs=108.2
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEE---EEEEe-CCEEEEEEeeC
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGE---GLTLL-GEKLFQVTWLQ 169 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgE---Git~~-g~~LyqlTwk~ 169 (276)
.+++.||.....=..|++..+||.+|.+ .|-.+.|.++|+.++. -..++.|.. -.. ++-.+ -+++|..||..
T Consensus 178 ~~i~vfpaPqG~gpyGi~atpdGsvwya--slagnaiaridp~~~~-aev~p~P~~-~~~gsRriwsdpig~~wittwg~ 253 (353)
T COG4257 178 NVISVFPAPQGGGPYGICATPDGSVWYA--SLAGNAIARIDPFAGH-AEVVPQPNA-LKAGSRRIWSDPIGRAWITTWGT 253 (353)
T ss_pred CceeeeccCCCCCCcceEECCCCcEEEE--eccccceEEcccccCC-cceecCCCc-ccccccccccCccCcEEEeccCC
Confidence 5788887643333459999999998876 2456889999999983 233333321 111 22222 27999999999
Q ss_pred CEEEEEeCCCCcEEEEEecC--CCCeeEEeeCC-CEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEEC
Q 023864 170 KTGFIYDQNNLNKLEEFTHQ--MKDGWGLATDG-KVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIK 245 (276)
Q Consensus 170 ~~v~V~D~~tlk~i~~~~~~--~~EGWGLT~Dg-~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~id 245 (276)
+.+..||+.+.. -.+++.+ .++++.+--|. .++|.|| +++.|..+||+|.+ +.|-.-.+|-.+--.|.-..
T Consensus 254 g~l~rfdPs~~s-W~eypLPgs~arpys~rVD~~grVW~sea~agai~rfdpeta~----ftv~p~pr~n~gn~ql~gr~ 328 (353)
T COG4257 254 GSLHRFDPSVTS-WIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETAR----FTVLPIPRPNSGNIQLDGRP 328 (353)
T ss_pred ceeeEeCccccc-ceeeeCCCCCCCcceeeeccCCcEEeeccccCceeecCcccce----EEEecCCCCCCCceeccCCC
Confidence 999999998877 5566665 56888876654 6899999 89999999999874 44433223322211233346
Q ss_pred CEEEEEeCCCCCeEEE
Q 023864 246 GEVWANVWQVWPCIPY 261 (276)
Q Consensus 246 G~lyANvw~s~d~I~v 261 (276)
|++|..--.. |.+++
T Consensus 329 ge~W~~e~gv-d~lv~ 343 (353)
T COG4257 329 GELWFTEAGV-DALVT 343 (353)
T ss_pred CceeecccCc-ceeEE
Confidence 7899887777 76665
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0045 Score=63.46 Aligned_cols=154 Identities=16% Similarity=0.086 Sum_probs=102.1
Q ss_pred CCCceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe-CCEEEEEEeeCCEEEEEeCCCCc
Q 023864 104 RAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNLN 181 (276)
Q Consensus 104 ~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~-g~~LyqlTwk~~~v~V~D~~tlk 181 (276)
...+..+.|+|++. ++.++| .+..|+.||+.+++....+..+.... .+++. ++.++..+-+++++.+||+.+.+
T Consensus 125 ~~~V~sVaf~P~g~~iLaSgS--~DgtIrIWDl~tg~~~~~i~~~~~V~--SlswspdG~lLat~s~D~~IrIwD~Rsg~ 200 (568)
T PTZ00420 125 KKKISIIDWNPMNYYIMCSSG--FDSFVNIWDIENEKRAFQINMPKKLS--SLKWNIKGNLLSGTCVGKHMHIIDPRKQE 200 (568)
T ss_pred CCcEEEEEECCCCCeEEEEEe--CCCeEEEEECCCCcEEEEEecCCcEE--EEEECCCCCEEEEEecCCEEEEEECCCCc
Confidence 34567999999875 556666 67899999999998776665554443 45554 35667778889999999999999
Q ss_pred EEEEEecCCCCe-------e--EEeeCCCEEEEECCC----ceEEEEcCCCC-cEEEEEEeeeCCEee-eeeeeeEEECC
Q 023864 182 KLEEFTHQMKDG-------W--GLATDGKVLFGSDGS----SMLYQIDPQTL-KVIRKDIVRYKGREV-RNLNELEFIKG 246 (276)
Q Consensus 182 ~i~~~~~~~~EG-------W--GLT~Dg~~L~vSDGS----~~L~viDp~t~-~vi~~I~V~~~g~pv-~~lNELE~idG 246 (276)
.+.++.-. +| | ++.+|++.|+.+-.+ .+|.++|..++ +.+..+.......++ .... ..+|
T Consensus 201 ~i~tl~gH--~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D---~~tg 275 (568)
T PTZ00420 201 IASSFHIH--DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYD---ESTG 275 (568)
T ss_pred EEEEEecc--cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeee---CCCC
Confidence 99888632 22 2 234677777763322 37999999864 455554443221221 1111 1257
Q ss_pred EEEEEeCCCCCeEEEEeCCCC
Q 023864 247 EVWANVWQVWPCIPYAYLQAF 267 (276)
Q Consensus 247 ~lyANvw~s~d~I~vIDp~T~ 267 (276)
.+|+.--.+ ..|-+-|..++
T Consensus 276 ~l~lsGkGD-~tIr~~e~~~~ 295 (568)
T PTZ00420 276 LIYLIGKGD-GNCRYYQHSLG 295 (568)
T ss_pred CEEEEEECC-CeEEEEEccCC
Confidence 788776566 78888887764
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0016 Score=63.43 Aligned_cols=156 Identities=13% Similarity=0.098 Sum_probs=90.9
Q ss_pred eEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCC--EEEEEeCCCCcEEE
Q 023864 108 QGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK--TGFIYDQNNLNKLE 184 (276)
Q Consensus 108 QGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~--~v~V~D~~tlk~i~ 184 (276)
-...|+|||+ |+.....-+...|..+|+++|+.......+....+-....++++|+....+++ .++++|.++.+ +.
T Consensus 199 ~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~ 277 (427)
T PRK02889 199 ISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR 277 (427)
T ss_pred ccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cE
Confidence 3678999975 43333223567899999999987554445544333344445678876544443 57888876554 33
Q ss_pred EEecC--CCCeeEEeeCCCEEE-EEC--CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CC-EE-EEEeCCCC
Q 023864 185 EFTHQ--MKDGWGLATDGKVLF-GSD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EV-WANVWQVW 256 (276)
Q Consensus 185 ~~~~~--~~EGWGLT~Dg~~L~-vSD--GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG-~l-yANvw~s~ 256 (276)
++... ....-..++||++|+ +|| |..+|+.+|.++.+.. ++.. .+.... ...|. || +| |++.....
T Consensus 278 ~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~--~g~~~~---~~~~SpDG~~Ia~~s~~~g~ 351 (427)
T PRK02889 278 RLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTF--TGSYNT---SPRISPDGKLLAYISRVGGA 351 (427)
T ss_pred ECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEec--CCCCcC---ceEECCCCCEEEEEEccCCc
Confidence 33211 111234789999764 677 6789999998876543 3332 121111 12243 55 43 44432221
Q ss_pred CeEEEEeCCCCcEE
Q 023864 257 PCIPYAYLQAFGSS 270 (276)
Q Consensus 257 d~I~vIDp~T~~v~ 270 (276)
..|.++|.++++..
T Consensus 352 ~~I~v~d~~~g~~~ 365 (427)
T PRK02889 352 FKLYVQDLATGQVT 365 (427)
T ss_pred EEEEEEECCCCCeE
Confidence 37999999887643
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=97.77 E-value=6.8e-05 Score=49.19 Aligned_cols=33 Identities=36% Similarity=0.375 Sum_probs=31.0
Q ss_pred eCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeee
Q 023864 198 TDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRY 230 (276)
Q Consensus 198 ~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~ 230 (276)
+||++||++| ++++|.++|++++++++++.|+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~ 34 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGG 34 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCC
Confidence 5899999999 89999999999999999999975
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0021 Score=63.13 Aligned_cols=151 Identities=17% Similarity=0.166 Sum_probs=95.3
Q ss_pred EEEEecCCE--EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeC--CEEEEEeCCCCcEEE
Q 023864 109 GLLYAENDT--LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ--KTGFIYDQNNLNKLE 184 (276)
Q Consensus 109 GL~~~~dg~--LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~--~~v~V~D~~tlk~i~ 184 (276)
...++|||+ +|.+...-+...|.++|+++|+...-...+..........+|++|.....++ ..++++|.++.+. .
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~ 270 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-T 270 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-E
Confidence 567899874 5543332247899999999998765555554444455666777776655444 5799999877653 3
Q ss_pred EEec-C-CCCeeEEeeCCCEE-EEEC--CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCE--EEEEeCC--
Q 023864 185 EFTH-Q-MKDGWGLATDGKVL-FGSD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGE--VWANVWQ-- 254 (276)
Q Consensus 185 ~~~~-~-~~EGWGLT~Dg~~L-~vSD--GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~--lyANvw~-- 254 (276)
++.. + .-.....+|||++| |+|| |..+|+++|.++.+..+- ..+|.. |. .|. ||+ +|+..-.
T Consensus 271 ~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl---t~~g~~----~~-~~SPDG~~Ia~~~~~~~~ 342 (419)
T PRK04043 271 QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV---VFHGKN----NS-SVSTYKNYIVYSSRETNN 342 (419)
T ss_pred EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC---ccCCCc----Cc-eECCCCCEEEEEEcCCCc
Confidence 3421 1 11223588999876 5576 567999999998877432 222221 21 343 554 4544321
Q ss_pred -----CCCeEEEEeCCCCcE
Q 023864 255 -----VWPCIPYAYLQAFGS 269 (276)
Q Consensus 255 -----s~d~I~vIDp~T~~v 269 (276)
. .+|.++|+++++.
T Consensus 343 ~~~~~~-~~I~v~d~~~g~~ 361 (419)
T PRK04043 343 EFGKNT-FNLYLISTNSDYI 361 (419)
T ss_pred ccCCCC-cEEEEEECCCCCe
Confidence 2 4799999999764
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0036 Score=61.76 Aligned_cols=163 Identities=13% Similarity=0.087 Sum_probs=113.7
Q ss_pred CCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeC-CCCcEEEEeecCC--CceEEEEEEeCCEEEEEEeeCCEEEEEeCC
Q 023864 102 DPRAFTQGLLYAENDTLFESTGLYGRSSVRRVAL-ETGKVEAINQMEG--SYFGEGLTLLGEKLFQVTWLQKTGFIYDQN 178 (276)
Q Consensus 102 d~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl-~tgkv~~~~~l~~--~~FgEGit~~g~~LyqlTwk~~~v~V~D~~ 178 (276)
+......++.|++|+....++. .+..|++||. +.++.++..+ +- ..++-.+...+ ++.+--=.++++.++|..
T Consensus 201 ~h~~~v~~~~fs~d~~~l~s~s--~D~tiriwd~~~~~~~~~~l~-gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~ 276 (456)
T KOG0266|consen 201 GHTRGVSDVAFSPDGSYLLSGS--DDKTLRIWDLKDDGRNLKTLK-GHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVR 276 (456)
T ss_pred ccccceeeeEECCCCcEEEEec--CCceEEEeeccCCCeEEEEec-CCCCceEEEEecCCC-CEEEEecCCCcEEEEecc
Confidence 3466677999999998666655 8899999999 5556666654 43 33444444445 788888889999999999
Q ss_pred CCcEEEEEecCCCCeeE---EeeCCCEEEEECCCceEEEEcCCCCcEE--EEEEeeeCCEeeeeeeeeEEE-CCEEEEEe
Q 023864 179 NLNKLEEFTHQMKDGWG---LATDGKVLFGSDGSSMLYQIDPQTLKVI--RKDIVRYKGREVRNLNELEFI-KGEVWANV 252 (276)
Q Consensus 179 tlk~i~~~~~~~~EGWG---LT~Dg~~L~vSDGS~~L~viDp~t~~vi--~~I~V~~~g~pv~~lNELE~i-dG~lyANv 252 (276)
+.+.++.++.. .++.- +.+||..|+.++-+..|.++|..+++.. +.+.=.. .+. -++...+. ||+..+..
T Consensus 277 ~~~~~~~l~~h-s~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~--~~~-~~~~~~fsp~~~~ll~~ 352 (456)
T KOG0266|consen 277 TGECVRKLKGH-SDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAE--NSA-PVTSVQFSPNGKYLLSA 352 (456)
T ss_pred CCeEEEeeecc-CCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCC--CCC-ceeEEEECCCCcEEEEe
Confidence 99999999754 23333 6689999999877999999999999843 3322222 111 23344453 56555555
Q ss_pred CCCCCeEEEEeCCCCcEEEEE
Q 023864 253 WQVWPCIPYAYLQAFGSSLVY 273 (276)
Q Consensus 253 w~s~d~I~vIDp~T~~v~l~~ 273 (276)
+.. ..+..-|..+++.+..|
T Consensus 353 ~~d-~~~~~w~l~~~~~~~~~ 372 (456)
T KOG0266|consen 353 SLD-RTLKLWDLRSGKSVGTY 372 (456)
T ss_pred cCC-CeEEEEEccCCcceeee
Confidence 566 68888888887665443
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0018 Score=65.44 Aligned_cols=110 Identities=16% Similarity=0.148 Sum_probs=77.9
Q ss_pred CCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC--Cc--------eEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEE
Q 023864 115 NDTLFESTGLYGRSSVRRVALETGKVEAINQMEG--SY--------FGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLE 184 (276)
Q Consensus 115 dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~--~~--------FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~ 184 (276)
+|+||.++. ...|..+|.+||+++=+..... .. ...|+++.++++|+.++ ++.++.+|++|.+++-
T Consensus 69 ~g~vyv~s~---~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-dg~l~ALDa~TGk~~W 144 (527)
T TIGR03075 69 DGVMYVTTS---YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-DARLVALDAKTGKVVW 144 (527)
T ss_pred CCEEEEECC---CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-CCEEEEEECCCCCEEe
Confidence 589998655 3479999999999877765431 11 12467888999999886 6789999999999998
Q ss_pred EEecC-CCCeeEEee----CCCEEEEEC-C-----CceEEEEcCCCCcEEEEEEe
Q 023864 185 EFTHQ-MKDGWGLAT----DGKVLFGSD-G-----SSMLYQIDPQTLKVIRKDIV 228 (276)
Q Consensus 185 ~~~~~-~~EGWGLT~----Dg~~L~vSD-G-----S~~L~viDp~t~~vi~~I~V 228 (276)
++... ...++.++. .+..+|+.. + ...|+-+|++|++++=+...
T Consensus 145 ~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 145 SKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred ecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 87653 112333321 244677743 2 46899999999998755444
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0015 Score=60.97 Aligned_cols=142 Identities=17% Similarity=0.123 Sum_probs=105.7
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcE--EEEeecC-CCceEEEEEEeCCEEEEEEee
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKV--EAINQME-GSYFGEGLTLLGEKLFQVTWL 168 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv--~~~~~l~-~~~FgEGit~~g~~LyqlTwk 168 (276)
+-.-..+++| +..=+.-|++.||++.+. ++ |.-.||.||+.+++. +.+...+ ++.-+.|+-.+|..+|-- -.
T Consensus 29 tG~C~rTiqh-~dsqVNrLeiTpdk~~LA-aa--~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTg-se 103 (311)
T KOG0315|consen 29 TGICSRTIQH-PDSQVNRLEITPDKKDLA-AA--GNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTG-SE 103 (311)
T ss_pred cCeEEEEEec-CccceeeEEEcCCcchhh-hc--cCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEec-CC
Confidence 3456778999 455568999999988775 44 567899999999864 5566666 567777888777766643 46
Q ss_pred CCEEEEEeCCCCcEEEEEecCCC-CeeEEeeCCCEEEEECCCceEEEEcC-----------CCCcEEEEEEeeeCCEeee
Q 023864 169 QKTGFIYDQNNLNKLEEFTHQMK-DGWGLATDGKVLFGSDGSSMLYQIDP-----------QTLKVIRKDIVRYKGREVR 236 (276)
Q Consensus 169 ~~~v~V~D~~tlk~i~~~~~~~~-EGWGLT~Dg~~L~vSDGS~~L~viDp-----------~t~~vi~~I~V~~~g~pv~ 236 (276)
++++-|+|...+..-+.|....+ .-.-+.|+...|+++|.+..|+++|. +....++++.|..+|.-+.
T Consensus 104 Dgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~ 183 (311)
T KOG0315|consen 104 DGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLA 183 (311)
T ss_pred CceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEE
Confidence 89999999999888888876522 23347788899999999999999994 4456678888877766444
Q ss_pred ee
Q 023864 237 NL 238 (276)
Q Consensus 237 ~l 238 (276)
-.
T Consensus 184 a~ 185 (311)
T KOG0315|consen 184 AA 185 (311)
T ss_pred Ee
Confidence 33
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.011 Score=61.91 Aligned_cols=157 Identities=11% Similarity=0.079 Sum_probs=103.1
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCC----cEEE--EeecCCCceEEEEEEe--CCEEEEEEeeCCEEEEE
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETG----KVEA--INQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIY 175 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tg----kv~~--~~~l~~~~FgEGit~~--g~~LyqlTwk~~~v~V~ 175 (276)
...+-.+.|++||.++.++| .+..|++||.++. +... ...+..+.--.++++. .+........++.+.+|
T Consensus 483 ~~~V~~i~fs~dg~~latgg--~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lW 560 (793)
T PLN00181 483 SNLVCAIGFDRDGEFFATAG--VNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVW 560 (793)
T ss_pred CCcEEEEEECCCCCEEEEEe--CCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEE
Confidence 45567899999999888777 7889999998642 1100 0011111111234443 34566677789999999
Q ss_pred eCCCCcEEEEEecCCCCeeEEe--e-CCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE--CCEEEE
Q 023864 176 DQNNLNKLEEFTHQMKDGWGLA--T-DGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGEVWA 250 (276)
Q Consensus 176 D~~tlk~i~~~~~~~~EGWGLT--~-Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i--dG~lyA 250 (276)
|..+.+.+.++.-....=|.+. + |+..|+....+..|.++|..+.+.+..+.... .+.-+.+. +|..+|
T Consensus 561 d~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~------~v~~v~~~~~~g~~la 634 (793)
T PLN00181 561 DVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKA------NICCVQFPSESGRSLA 634 (793)
T ss_pred ECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCC------CeEEEEEeCCCCCEEE
Confidence 9999998888853223445654 3 56666666667899999999988877765421 23334443 466666
Q ss_pred EeCCCCCeEEEEeCCCCcE
Q 023864 251 NVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 251 Nvw~s~d~I~vIDp~T~~v 269 (276)
..-.+ +.|.+.|..+++.
T Consensus 635 tgs~d-g~I~iwD~~~~~~ 652 (793)
T PLN00181 635 FGSAD-HKVYYYDLRNPKL 652 (793)
T ss_pred EEeCC-CeEEEEECCCCCc
Confidence 66566 8899999887653
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0034 Score=59.48 Aligned_cols=114 Identities=10% Similarity=0.048 Sum_probs=73.0
Q ss_pred eEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCC--EEEEEeCCCCcEEE
Q 023864 108 QGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK--TGFIYDQNNLNKLE 184 (276)
Q Consensus 108 QGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~--~v~V~D~~tlk~i~ 184 (276)
....|++||+ |+.+....+...|..+|+++++..+....+......-...++++|+....+.+ .++++|.++.+. .
T Consensus 237 ~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~ 315 (417)
T TIGR02800 237 GAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-R 315 (417)
T ss_pred cceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-E
Confidence 4678999974 76655545778899999999876443322211111123335677776665543 699999887764 3
Q ss_pred EEecC--CCCeeEEeeCCCEEEEECC---CceEEEEcCCCCcE
Q 023864 185 EFTHQ--MKDGWGLATDGKVLFGSDG---SSMLYQIDPQTLKV 222 (276)
Q Consensus 185 ~~~~~--~~EGWGLT~Dg~~L~vSDG---S~~L~viDp~t~~v 222 (276)
++... ......+++||+.+++++. ..+|+++|+++...
T Consensus 316 ~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 316 RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE 358 (417)
T ss_pred EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe
Confidence 34322 1133457899999888664 34899999998543
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.004 Score=58.32 Aligned_cols=156 Identities=15% Similarity=0.112 Sum_probs=97.8
Q ss_pred ceEEEEecCCEEEEE-cCC---------CCCCeEEEEeCCCCcEEEEeecCC-----CceEEEEEEeC-------CEEEE
Q 023864 107 TQGLLYAENDTLFES-TGL---------YGRSSVRRVALETGKVEAINQMEG-----SYFGEGLTLLG-------EKLFQ 164 (276)
Q Consensus 107 TQGL~~~~dg~LyeS-tG~---------yg~S~I~~iDl~tgkv~~~~~l~~-----~~FgEGit~~g-------~~Lyq 164 (276)
+|+++++.+|+||+= +|. .+.-+|..||+.|+++++++.+|+ .-|=.-+.++. ..+|+
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence 479999999999974 443 345699999999999999998884 34556778876 58999
Q ss_pred EEeeCCEEEEEeCCCCcEEEEE--------------------ecC-CCCeeEEee---CCCEEEEEC-CCceEEEEcCCC
Q 023864 165 VTWLQKTGFIYDQNNLNKLEEF--------------------THQ-MKDGWGLAT---DGKVLFGSD-GSSMLYQIDPQT 219 (276)
Q Consensus 165 lTwk~~~v~V~D~~tlk~i~~~--------------------~~~-~~EGWGLT~---Dg~~L~vSD-GS~~L~viDp~t 219 (276)
..-...-+.|||.++.+--+-. ... ...|..|.+ ||++||-.= .+.++|-+..+.
T Consensus 83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~ 162 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSV 162 (287)
T ss_dssp EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHH
T ss_pred eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHH
Confidence 9999999999999886543221 111 113344544 777887755 567787775322
Q ss_pred Cc---EEE------E-EEeeeCCEeeeeeeeeEEE-CCEEEEEeCCCCCeEEEEeCCC
Q 023864 220 LK---VIR------K-DIVRYKGREVRNLNELEFI-KGEVWANVWQVWPCIPYAYLQA 266 (276)
Q Consensus 220 ~~---vi~------~-I~V~~~g~pv~~lNELE~i-dG~lyANvw~s~d~I~vIDp~T 266 (276)
++ ... . ..+++.+ ....-|.+. +|.||.+.... +.|.+.||.+
T Consensus 163 L~~~~~~~~~~~~~~v~~lG~k~---~~s~g~~~D~~G~ly~~~~~~-~aI~~w~~~~ 216 (287)
T PF03022_consen 163 LRDPSLSDAQALASQVQDLGDKG---SQSDGMAIDPNGNLYFTDVEQ-NAIGCWDPDG 216 (287)
T ss_dssp HCSTT--HHH-HHHT-EEEEE------SECEEEEETTTEEEEEECCC-TEEEEEETTT
T ss_pred hhCccccccccccccceeccccC---CCCceEEECCCCcEEEecCCC-CeEEEEeCCC
Confidence 11 110 1 1223222 122223343 68999999899 9999999998
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0052 Score=59.81 Aligned_cols=151 Identities=13% Similarity=0.125 Sum_probs=90.8
Q ss_pred CceEEEEecCCE-E-EEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCC--EEEEEeCCCCc
Q 023864 106 FTQGLLYAENDT-L-FESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK--TGFIYDQNNLN 181 (276)
Q Consensus 106 FTQGL~~~~dg~-L-yeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~--~v~V~D~~tlk 181 (276)
..-...|+|||+ | |.+.+ -+...|..+|+++|+......++.....-....+|++|+....+++ .++++|.++.+
T Consensus 205 ~v~~p~wSPDG~~la~~s~~-~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~ 283 (429)
T PRK01742 205 PLMSPAWSPDGSKLAYVSFE-NKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT 283 (429)
T ss_pred ccccceEcCCCCEEEEEEec-CCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC
Confidence 445789999985 4 44433 2457899999999975444444443333334445677877766665 46778887765
Q ss_pred EEEEEecC--CCCeeEEeeCCCEEE-EEC--CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CC-EEEEEeCC
Q 023864 182 KLEEFTHQ--MKDGWGLATDGKVLF-GSD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVWANVWQ 254 (276)
Q Consensus 182 ~i~~~~~~--~~EGWGLT~Dg~~L~-vSD--GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG-~lyANvw~ 254 (276)
. .++... .......++||+.|+ +|| |..+|+.+|..+.... .+ +..+ .. ..+. || +|++. .
T Consensus 284 ~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~-~l--~~~~---~~---~~~SpDG~~ia~~--~ 351 (429)
T PRK01742 284 P-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS-LV--GGRG---YS---AQISADGKTLVMI--N 351 (429)
T ss_pred e-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE-Ee--cCCC---CC---ccCCCCCCEEEEE--c
Confidence 4 333321 112345789999765 566 6779999998776542 22 2212 11 1232 55 45443 2
Q ss_pred CCCeEEEEeCCCCcEE
Q 023864 255 VWPCIPYAYLQAFGSS 270 (276)
Q Consensus 255 s~d~I~vIDp~T~~v~ 270 (276)
. +.|.++|.++++..
T Consensus 352 ~-~~i~~~Dl~~g~~~ 366 (429)
T PRK01742 352 G-DNVVKQDLTSGSTE 366 (429)
T ss_pred C-CCEEEEECCCCCeE
Confidence 3 66888999987643
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.011 Score=59.48 Aligned_cols=124 Identities=9% Similarity=0.085 Sum_probs=85.4
Q ss_pred CCCceEEEEec-CCEEEEEcCCCCCCeEEEEeCCCCcEEE-----EeecCCC-ceEEEEEEe--CCEEEEEEeeCCEEEE
Q 023864 104 RAFTQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEA-----INQMEGS-YFGEGLTLL--GEKLFQVTWLQKTGFI 174 (276)
Q Consensus 104 ~aFTQGL~~~~-dg~LyeStG~yg~S~I~~iDl~tgkv~~-----~~~l~~~-~FgEGit~~--g~~LyqlTwk~~~v~V 174 (276)
..-+..+.|+| |+.++.+++ .+..|+.||+.++.... ...+..+ .--..+.+. ++.+....-.++++.+
T Consensus 75 ~~~V~~v~fsP~d~~~LaSgS--~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrI 152 (493)
T PTZ00421 75 EGPIIDVAFNPFDPQKLFTAS--EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNV 152 (493)
T ss_pred CCCEEEEEEcCCCCCEEEEEe--CCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEE
Confidence 45567999998 777777777 78899999998764311 1112221 112345554 2345555566899999
Q ss_pred EeCCCCcEEEEEecC--CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEee
Q 023864 175 YDQNNLNKLEEFTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVR 229 (276)
Q Consensus 175 ~D~~tlk~i~~~~~~--~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~ 229 (276)
||.++.+.+..+... .-....+.+||..|+.+..+.+|.++|+.+.+.+.++...
T Consensus 153 WDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H 209 (493)
T PTZ00421 153 WDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAH 209 (493)
T ss_pred EECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecC
Confidence 999999888887522 1133446789998888877889999999999988776543
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00096 Score=67.40 Aligned_cols=114 Identities=13% Similarity=0.049 Sum_probs=81.5
Q ss_pred EEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEecCCCCee-----------EEeeCCCEEEEECCCceEEEEcCCCCcEE
Q 023864 155 LTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGW-----------GLATDGKVLFGSDGSSMLYQIDPQTLKVI 223 (276)
Q Consensus 155 it~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~EGW-----------GLT~Dg~~L~vSDGS~~L~viDp~t~~vi 223 (276)
-.+.+++||+.+.. +.++.+|++|.+++-++....+.+. |++..++.+|+.+.+..|+-+|++|++++
T Consensus 65 Pvv~~g~vyv~s~~-g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 65 PLVVDGVMYVTTSY-SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVV 143 (527)
T ss_pred CEEECCEEEEECCC-CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEE
Confidence 45678999998874 5799999999999998875421111 23445678999988899999999999998
Q ss_pred EEEEeeeCCEeeeeeeeeEEECCEEEEEeCC-----CCCeEEEEeCCCCcEE
Q 023864 224 RKDIVRYKGREVRNLNELEFIKGEVWANVWQ-----VWPCIPYAYLQAFGSS 270 (276)
Q Consensus 224 ~~I~V~~~g~pv~~lNELE~idG~lyANvw~-----s~d~I~vIDp~T~~v~ 270 (276)
=+..+.+.........--.+.+|.||+.... . ..|..+|++||+..
T Consensus 144 W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~-G~v~AlD~~TG~~l 194 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVR-GYVTAYDAKTGKLV 194 (527)
T ss_pred eecccccccccccccCCcEEECCEEEEeecccccCCC-cEEEEEECCCCcee
Confidence 7666543111111111223568999988753 4 68999999998864
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0011 Score=60.73 Aligned_cols=151 Identities=17% Similarity=0.108 Sum_probs=105.8
Q ss_pred eEEEEEEecC-CCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCE
Q 023864 93 IQVVNEFPHD-PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKT 171 (276)
Q Consensus 93 ~~Vv~~~Phd-~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~ 171 (276)
-+++-+-+.+ +..|=+|+.-.+ +.+|.=| |.+..-.+||.+|-+.+.++..+.. |=|+|-+++.|++- --+..
T Consensus 78 gq~~~s~~l~~~~~FgEGit~~g-d~~y~LT--w~egvaf~~d~~t~~~lg~~~y~Ge--GWgLt~d~~~Lims-dGsat 151 (262)
T COG3823 78 GQEIFSEKLAPDTVFGEGITKLG-DYFYQLT--WKEGVAFKYDADTLEELGRFSYEGE--GWGLTSDDKNLIMS-DGSAT 151 (262)
T ss_pred ceEEEEeecCCccccccceeecc-ceEEEEE--eccceeEEEChHHhhhhcccccCCc--ceeeecCCcceEee-CCceE
Confidence 3566666666 699999999886 5676543 3666777899999888888777766 55788888886654 35566
Q ss_pred EEEEeCCCCcEEEEEecCCCCeeEEe------eCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeee-------CCEeeee
Q 023864 172 GFIYDQNNLNKLEEFTHQMKDGWGLA------TDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRY-------KGREVRN 237 (276)
Q Consensus 172 v~V~D~~tlk~i~~~~~~~~EGWGLT------~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~-------~g~pv~~ 237 (276)
+...||+||+.++++..- -+|--++ .-...||..= -+++|..|||++++|++-|.+.. ++..-.-
T Consensus 152 L~frdP~tfa~~~~v~VT-~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nv 230 (262)
T COG3823 152 LQFRDPKTFAELDTVQVT-DDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNV 230 (262)
T ss_pred EEecCHHHhhhcceEEEE-ECCeecccccceeeeccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCcccccccc
Confidence 667899999999998753 2443332 3334555532 58899999999999999999853 2333345
Q ss_pred eeeeEEEC--CEEEE
Q 023864 238 LNELEFIK--GEVWA 250 (276)
Q Consensus 238 lNELE~id--G~lyA 250 (276)
||-+.+++ +++|.
T Consensus 231 lNGIA~~~~~~r~~i 245 (262)
T COG3823 231 LNGIAHDPQQDRFLI 245 (262)
T ss_pred ccceeecCcCCeEEE
Confidence 77777763 35554
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0083 Score=57.03 Aligned_cols=153 Identities=9% Similarity=0.025 Sum_probs=107.0
Q ss_pred EecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC--CceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEecC
Q 023864 112 YAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG--SYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ 189 (276)
Q Consensus 112 ~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~--~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~ 189 (276)
...||++|..+. ...|..+|+++|+++=+..+.. ..+..++...+++||+-+|.. .++.+|..+.+++-+++.+
T Consensus 65 ~~~dg~v~~~~~---~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g-~~y~ld~~~G~~~W~~~~~ 140 (370)
T COG1520 65 ADGDGTVYVGTR---DGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDG-KLYALDASTGTLVWSRNVG 140 (370)
T ss_pred EeeCCeEEEecC---CCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccc-eEEEEECCCCcEEEEEecC
Confidence 566899998522 2289999999999776666553 667778888899999999988 9999999999999999876
Q ss_pred CCCeeE--EeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCC-CCCeEEEEeCCC
Q 023864 190 MKDGWG--LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQ-VWPCIPYAYLQA 266 (276)
Q Consensus 190 ~~EGWG--LT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~-s~d~I~vIDp~T 266 (276)
...=|. .......+|+...+..++-+|++|++.+=+..+... ............+|.+|+..-. + ..+..+|+++
T Consensus 141 ~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~~vy~~~~~~~-~~~~a~~~~~ 218 (370)
T COG1520 141 GSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAP-LSLSIYGSPAIASGTVYVGSDGYD-GILYALNAED 218 (370)
T ss_pred CCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCc-cccccccCceeecceEEEecCCCc-ceEEEEEccC
Confidence 200122 122345666655679999999999988655545321 1111111122557888876532 5 6899999999
Q ss_pred CcEE
Q 023864 267 FGSS 270 (276)
Q Consensus 267 ~~v~ 270 (276)
|...
T Consensus 219 G~~~ 222 (370)
T COG1520 219 GTLK 222 (370)
T ss_pred CcEe
Confidence 7643
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.01 Score=56.38 Aligned_cols=155 Identities=11% Similarity=0.123 Sum_probs=105.3
Q ss_pred eEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC-CceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEE
Q 023864 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG-SYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (276)
Q Consensus 108 QGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~-~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~ 186 (276)
-|.... ||++|.++.. | .+..+|..+|+.+=+.+++. -.+.......++.+|+.+ .++.++.+|.+|.+.+-++
T Consensus 105 ~~~~~~-~G~i~~g~~~-g--~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s-~~g~~~al~~~tG~~~W~~ 179 (370)
T COG1520 105 GPILGS-DGKIYVGSWD-G--KLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGT-DDGHLYALNADTGTLKWTY 179 (370)
T ss_pred CceEEe-CCeEEEeccc-c--eEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEec-CCCeEEEEEccCCcEEEEE
Confidence 344444 8999988774 3 89999999999988888887 456677777789999999 7799999999999998886
Q ss_pred ecCCC---CeeE--EeeCCCEEEE-ECC-CceEEEEcCCCCcEEEEEEeee----CCE--eeeeeeeeEEECCEEEEEeC
Q 023864 187 THQMK---DGWG--LATDGKVLFG-SDG-SSMLYQIDPQTLKVIRKDIVRY----KGR--EVRNLNELEFIKGEVWANVW 253 (276)
Q Consensus 187 ~~~~~---EGWG--LT~Dg~~L~v-SDG-S~~L~viDp~t~~vi~~I~V~~----~g~--pv~~lNELE~idG~lyANvw 253 (276)
..+.+ ...+ ...+ ..+|+ +++ +..++-+|+++++.+-...+.. ... ....-+...++++.+|+--+
T Consensus 180 ~~~~~~~~~~~~~~~~~~-~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~ 258 (370)
T COG1520 180 ETPAPLSLSIYGSPAIAS-GTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSY 258 (370)
T ss_pred ecCCccccccccCceeec-ceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEec
Confidence 65411 1111 2223 34555 444 6689999999999987754432 111 11233444456666655554
Q ss_pred CCCCeEEEEeCCCCcEE
Q 023864 254 QVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 254 ~s~d~I~vIDp~T~~v~ 270 (276)
. ..+..+|..+|+.+
T Consensus 259 ~--g~~~~l~~~~G~~~ 273 (370)
T COG1520 259 G--GKLLCLDADTGELI 273 (370)
T ss_pred C--CeEEEEEcCCCceE
Confidence 3 45888998887654
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0067 Score=61.63 Aligned_cols=154 Identities=11% Similarity=0.097 Sum_probs=99.0
Q ss_pred EEEEecCCEEEEEcCCC-C---CCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeC-----CEEEEEeCCC
Q 023864 109 GLLYAENDTLFESTGLY-G---RSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ-----KTGFIYDQNN 179 (276)
Q Consensus 109 GL~~~~dg~LyeStG~y-g---~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~-----~~v~V~D~~t 179 (276)
+.+.. ++.||..+|.. + .+.+.+||+.+++-....+++.....-+++..+++||++-=.+ +.+..||+.+
T Consensus 298 ~~a~l-~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~ 376 (557)
T PHA02713 298 ASAIV-DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGD 376 (557)
T ss_pred EEEEE-CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCC
Confidence 56665 58999987742 2 2668999999987655556665555568889999999996543 4688999876
Q ss_pred Cc--EEEEEecCCCCeeEEeeCCCEEEEECC------------------------CceEEEEcCCCCcEEEEEEeeeCCE
Q 023864 180 LN--KLEEFTHQMKDGWGLATDGKVLFGSDG------------------------SSMLYQIDPQTLKVIRKDIVRYKGR 233 (276)
Q Consensus 180 lk--~i~~~~~~~~EGWGLT~Dg~~L~vSDG------------------------S~~L~viDp~t~~vi~~I~V~~~g~ 233 (276)
-+ .+..++.+ ..+-+.+.-++.||+.=| .+.+...||++.+-...-... .++
T Consensus 377 ~~W~~~~~mp~~-r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~-~~r 454 (557)
T PHA02713 377 DKWKMLPDMPIA-LSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW-TGT 454 (557)
T ss_pred CeEEECCCCCcc-cccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCC-ccc
Confidence 54 33444444 344555555667777533 356889999988664221111 111
Q ss_pred eeeeeeeeEEECCEEEEEeCCCC-----CeEEEEeCCC-Cc
Q 023864 234 EVRNLNELEFIKGEVWANVWQVW-----PCIPYAYLQA-FG 268 (276)
Q Consensus 234 pv~~lNELE~idG~lyANvw~s~-----d~I~vIDp~T-~~ 268 (276)
. . --+...+|+||+--..+. +.|-+-||++ ++
T Consensus 455 ~--~-~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~ 492 (557)
T PHA02713 455 I--R-PGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNG 492 (557)
T ss_pred c--c-CcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCC
Confidence 1 1 124577999998754320 3467899998 44
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00085 Score=62.37 Aligned_cols=98 Identities=17% Similarity=0.168 Sum_probs=65.7
Q ss_pred eEEEEecC-CEEEEEcCCCCCCeE--EEEeCCCCcEEEEe---ecC-----CCceEEEEEEeC-CEEEEEEeeCCEEEEE
Q 023864 108 QGLLYAEN-DTLFESTGLYGRSSV--RRVALETGKVEAIN---QME-----GSYFGEGLTLLG-EKLFQVTWLQKTGFIY 175 (276)
Q Consensus 108 QGL~~~~d-g~LyeStG~yg~S~I--~~iDl~tgkv~~~~---~l~-----~~~FgEGit~~g-~~LyqlTwk~~~v~V~ 175 (276)
.||.++-| .++|...- -+=.| ..||..||.+.+.- +|. ..+++.|+|++. +.||+++|..++++.+
T Consensus 161 Ngl~Wd~d~K~fY~iDs--ln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~ 238 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDS--LNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKV 238 (310)
T ss_pred ccccccccCcEEEEEcc--CceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEE
Confidence 46666544 34554332 22345 33458888764432 222 467889999985 8999999999999999
Q ss_pred eCCCCcEEEEEecCCCCeeEEeeCCC---EEEEEC
Q 023864 176 DQNNLNKLEEFTHQMKDGWGLATDGK---VLFGSD 207 (276)
Q Consensus 176 D~~tlk~i~~~~~~~~EGWGLT~Dg~---~L~vSD 207 (276)
|+.|.|.+.+|..|.+.=---|--|+ .||++-
T Consensus 239 dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 239 DPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred CCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence 99999999999877433333444454 678754
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0072 Score=58.81 Aligned_cols=152 Identities=12% Similarity=0.040 Sum_probs=89.8
Q ss_pred eEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCC--EEEEEeCCCCcEEE
Q 023864 108 QGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK--TGFIYDQNNLNKLE 184 (276)
Q Consensus 108 QGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~--~v~V~D~~tlk~i~ 184 (276)
..+.|+|||+ |+.+...-|...|..+|+++|++.+...-......--...++++|+...-+++ .++++|.++.+. .
T Consensus 251 ~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~ 329 (433)
T PRK04922 251 GAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-E 329 (433)
T ss_pred cCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-E
Confidence 3678999985 65443333778999999999986543222211111223344567776665443 588899877653 3
Q ss_pred EEecC--CCCeeEEeeCCCEEEEECC---CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCE--EEEEeCCCC
Q 023864 185 EFTHQ--MKDGWGLATDGKVLFGSDG---SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGE--VWANVWQVW 256 (276)
Q Consensus 185 ~~~~~--~~EGWGLT~Dg~~L~vSDG---S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~--lyANvw~s~ 256 (276)
++... ....-.+++||+.++++.+ ..+|+++|+++.+.. .+ +.++. .. ...|. ||+ +|+..+...
T Consensus 330 ~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~L--t~~~~-~~---~p~~spdG~~i~~~s~~~g~ 402 (433)
T PRK04922 330 RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TL--TPGSL-DE---SPSFAPNGSMVLYATREGGR 402 (433)
T ss_pred EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-EC--CCCCC-CC---CceECCCCCEEEEEEecCCc
Confidence 33322 1123467899999987543 447999999988764 22 22111 11 12343 564 555555432
Q ss_pred CeEEEEeCCCC
Q 023864 257 PCIPYAYLQAF 267 (276)
Q Consensus 257 d~I~vIDp~T~ 267 (276)
..|.++|+..+
T Consensus 403 ~~L~~~~~~g~ 413 (433)
T PRK04922 403 GVLAAVSTDGR 413 (433)
T ss_pred eEEEEEECCCC
Confidence 57999999653
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0068 Score=58.02 Aligned_cols=160 Identities=17% Similarity=0.150 Sum_probs=93.0
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCEEEEEcC----------CCCCCeEEEEeCCC--CcEEEE-eecCCCceEEEEEEe
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTG----------LYGRSSVRRVALET--GKVEAI-NQMEGSYFGEGLTLL 158 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG----------~yg~S~I~~iDl~t--gkv~~~-~~l~~~~FgEGit~~ 158 (276)
.++++++=|-= ...-+++++++|+||++.. .-..++|.+++..+ |+.... +-...--++.||++.
T Consensus 3 ~~~l~A~~p~~--~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~ 80 (367)
T TIGR02604 3 KVTLFAAEPLL--RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVA 80 (367)
T ss_pred EEEEEECCCcc--CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEe
Confidence 44556554432 2234899999999998752 11235888887653 554332 223334467899997
Q ss_pred CCEEEEEEeeCCEEEEE-eCC-------CCcEE-EEEecC------CCCeeEEeeCCCEEEEECCC--------------
Q 023864 159 GEKLFQVTWLQKTGFIY-DQN-------NLNKL-EEFTHQ------MKDGWGLATDGKVLFGSDGS-------------- 209 (276)
Q Consensus 159 g~~LyqlTwk~~~v~V~-D~~-------tlk~i-~~~~~~------~~EGWGLT~Dg~~L~vSDGS-------------- 209 (276)
.+.||+.. ...++.+ |.+ ..+++ ..++.. ...|..+.+|| +||+++|+
T Consensus 81 ~~GlyV~~--~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G~~~~~~~~~~~~~~~ 157 (367)
T TIGR02604 81 VGGVYVAT--PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHGNTLASKVTRPGTSDE 157 (367)
T ss_pred cCCEEEeC--CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecccCCCceeccCCCccC
Confidence 65599975 4456655 543 12222 234332 12234455676 79999983
Q ss_pred ------ceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCCCCCeEEEEe
Q 023864 210 ------SMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQVWPCIPYAY 263 (276)
Q Consensus 210 ------~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~s~d~I~vID 263 (276)
..|+.+||.+.+. ++-..| +.+.|.|.+. +|++|++.-.. .....|+
T Consensus 158 ~~~~~~g~i~r~~pdg~~~----e~~a~G--~rnp~Gl~~d~~G~l~~tdn~~-~~~~~i~ 211 (367)
T TIGR02604 158 SRQGLGGGLFRYNPDGGKL----RVVAHG--FQNPYGHSVDSWGDVFFCDNDD-PPLCRVT 211 (367)
T ss_pred cccccCceEEEEecCCCeE----EEEecC--cCCCccceECCCCCEEEEccCC-CceeEEc
Confidence 2588888887653 222223 4588888885 67888654333 4444444
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00095 Score=70.09 Aligned_cols=120 Identities=17% Similarity=0.164 Sum_probs=96.3
Q ss_pred ceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEEEEEeeCCEEEEEeCCCCcEEEE
Q 023864 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNKLEE 185 (276)
Q Consensus 107 TQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~LyqlTwk~~~v~V~D~~tlk~i~~ 185 (276)
.-||+.++-+++.+|+| -+.-+..||+.+..++.+..++..+= ++..+. ..++.+--.+=.+++||..|.++.++
T Consensus 496 V~gla~D~~n~~~vsa~--~~Gilkfw~f~~k~l~~~l~l~~~~~--~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~ 571 (910)
T KOG1539|consen 496 VTGLAVDGTNRLLVSAG--ADGILKFWDFKKKVLKKSLRLGSSIT--GIVYHRVSDLLAIALDDFSIRVVDVVTRKVVRE 571 (910)
T ss_pred eeEEEecCCCceEEEcc--CcceEEEEecCCcceeeeeccCCCcc--eeeeeehhhhhhhhcCceeEEEEEchhhhhhHH
Confidence 36999998789999999 56678899999998888888886532 444433 46666777788899999999999998
Q ss_pred Ee-cC-CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeee
Q 023864 186 FT-HQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY 230 (276)
Q Consensus 186 ~~-~~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~ 230 (276)
|. +. .---..+++||+||+.++-+.+|.++|..|...+.-+-|..
T Consensus 572 f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~ 618 (910)
T KOG1539|consen 572 FWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDS 618 (910)
T ss_pred hhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCC
Confidence 85 32 11234578999999999999999999999999998888864
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.043 Score=57.54 Aligned_cols=163 Identities=14% Similarity=0.052 Sum_probs=98.8
Q ss_pred EEEEEE-ecCCCCCceEEEEec-CCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEE--eCCEEEEEEeeC
Q 023864 94 QVVNEF-PHDPRAFTQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL--LGEKLFQVTWLQ 169 (276)
Q Consensus 94 ~Vv~~~-Phd~~aFTQGL~~~~-dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~--~g~~LyqlTwk~ 169 (276)
+.+.++ .| ...+..+.|++ ++.++.++| .+..|+.||+.+++.+.......... .+.+ .++..+...-.+
T Consensus 566 ~~~~~~~~H--~~~V~~l~~~p~~~~~L~Sgs--~Dg~v~iWd~~~~~~~~~~~~~~~v~--~v~~~~~~g~~latgs~d 639 (793)
T PLN00181 566 QLVTEMKEH--EKRVWSIDYSSADPTLLASGS--DDGSVKLWSINQGVSIGTIKTKANIC--CVQFPSESGRSLAFGSAD 639 (793)
T ss_pred eEEEEecCC--CCCEEEEEEcCCCCCEEEEEc--CCCEEEEEECCCCcEEEEEecCCCeE--EEEEeCCCCCEEEEEeCC
Confidence 455555 34 34567999986 677777777 77899999999998877665443333 3333 245666777788
Q ss_pred CEEEEEeCCCCc-EEEEEecCCCCeeEEe-eCCCEEEEECCCceEEEEcCCCC------cEEEEEEeeeCCEeeeeeeee
Q 023864 170 KTGFIYDQNNLN-KLEEFTHQMKDGWGLA-TDGKVLFGSDGSSMLYQIDPQTL------KVIRKDIVRYKGREVRNLNEL 241 (276)
Q Consensus 170 ~~v~V~D~~tlk-~i~~~~~~~~EGWGLT-~Dg~~L~vSDGS~~L~viDp~t~------~vi~~I~V~~~g~pv~~lNEL 241 (276)
+.+.+||..+.+ .+.++.-....=+.+. .|+..|+.+..++.|.++|..+. +.++++.. +. ..+|.+
T Consensus 640 g~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~g----h~-~~i~~v 714 (793)
T PLN00181 640 HKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMG----HT-NVKNFV 714 (793)
T ss_pred CeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcC----CC-CCeeEE
Confidence 999999998765 3444431111112232 37788887767788999998643 23333221 11 123333
Q ss_pred EEE-CCEEEEEeCCCCCeEEEEeCCCCc
Q 023864 242 EFI-KGEVWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 242 E~i-dG~lyANvw~s~d~I~vIDp~T~~ 268 (276)
.+. +|.+.|..-.+ +.|.+.|..+..
T Consensus 715 ~~s~~~~~lasgs~D-~~v~iw~~~~~~ 741 (793)
T PLN00181 715 GLSVSDGYIATGSET-NEVFVYHKAFPM 741 (793)
T ss_pred EEcCCCCEEEEEeCC-CEEEEEECCCCC
Confidence 343 34444444455 777777766543
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0073 Score=58.13 Aligned_cols=145 Identities=12% Similarity=0.130 Sum_probs=103.1
Q ss_pred ceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEE
Q 023864 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (276)
Q Consensus 107 TQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~ 186 (276)
.+-|.+++||+++.++- -+.+|..||+-.|..+.++.++.-..+.-.-..++..++++-.+....+++....+ -.-+
T Consensus 68 i~sl~WS~dgr~LltsS--~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~-h~~L 144 (405)
T KOG1273|consen 68 ITSLCWSRDGRKLLTSS--RDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK-HSVL 144 (405)
T ss_pred eeEEEecCCCCEeeeec--CCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCc-eeec
Confidence 38899999998777666 78899999999999999999998877666666778888888877777777765411 1112
Q ss_pred ecC-------CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCE-EEEEeCCCCC
Q 023864 187 THQ-------MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGE-VWANVWQVWP 257 (276)
Q Consensus 187 ~~~-------~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~-lyANvw~s~d 257 (276)
+.. ....--++.-|+++|..++...|.|+|.+|++.+....++. +..+-.+++. +|+ +-.|. + |
T Consensus 145 p~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits----~~~IK~I~~s~~g~~liiNt--s-D 217 (405)
T KOG1273|consen 145 PKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS----VQAIKQIIVSRKGRFLIINT--S-D 217 (405)
T ss_pred cCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeech----heeeeEEEEeccCcEEEEec--C-C
Confidence 211 00111255668999999999999999999999998766653 2344444554 555 55555 4 6
Q ss_pred eEEE
Q 023864 258 CIPY 261 (276)
Q Consensus 258 ~I~v 261 (276)
+|++
T Consensus 218 RvIR 221 (405)
T KOG1273|consen 218 RVIR 221 (405)
T ss_pred ceEE
Confidence 6655
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0037 Score=63.49 Aligned_cols=151 Identities=11% Similarity=0.088 Sum_probs=98.5
Q ss_pred EEEEecCCEEEEEcCCCCC---CeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEee-----------------
Q 023864 109 GLLYAENDTLFESTGLYGR---SSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL----------------- 168 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg~---S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk----------------- 168 (276)
+++.. +|+||.-+|.-|. +++.+||+.+.+-....+++....+-+++..+++||++-=.
T Consensus 346 ~~~~~-~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~ 424 (557)
T PHA02713 346 SLAVI-DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDM 424 (557)
T ss_pred eEEEE-CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccc
Confidence 66665 5899998774332 56899999998776666777666667888899999998532
Q ss_pred ------CCEEEEEeCCCCc--EEEEEecCCCCeeEEeeCCCEEEEECCC-------ceEEEEcCCC-CcEEE--EEEeee
Q 023864 169 ------QKTGFIYDQNNLN--KLEEFTHQMKDGWGLATDGKVLFGSDGS-------SMLYQIDPQT-LKVIR--KDIVRY 230 (276)
Q Consensus 169 ------~~~v~V~D~~tlk--~i~~~~~~~~EGWGLT~Dg~~L~vSDGS-------~~L~viDp~t-~~vi~--~I~V~~ 230 (276)
.+.+..||+.+-+ .+..++.+ ..+-+++.-+..||+--|. +.+...||++ .+-.. ......
T Consensus 425 ~~~~~~~~~ve~YDP~td~W~~v~~m~~~-r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r 503 (557)
T PHA02713 425 EEDTHSSNKVIRYDTVNNIWETLPNFWTG-TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL 503 (557)
T ss_pred cccccccceEEEECCCCCeEeecCCCCcc-cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc
Confidence 2568999987654 44444444 3444566556677775442 3578899998 55542 222221
Q ss_pred CCEeeeeeeeeEEECCEEEEEeCCCCC--eEEEEeCCCCc
Q 023864 231 KGREVRNLNELEFIKGEVWANVWQVWP--CIPYAYLQAFG 268 (276)
Q Consensus 231 ~g~pv~~lNELE~idG~lyANvw~s~d--~I~vIDp~T~~ 268 (276)
.+ --+...+|+|||-=..+ . .+-+-||.|++
T Consensus 504 ~~------~~~~~~~~~iyv~Gg~~-~~~~~e~yd~~~~~ 536 (557)
T PHA02713 504 SA------LHTILHDNTIMMLHCYE-SYMLQDTFNVYTYE 536 (557)
T ss_pred cc------ceeEEECCEEEEEeeec-ceeehhhcCccccc
Confidence 11 12346699999843333 3 57778888765
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.01 Score=57.20 Aligned_cols=113 Identities=15% Similarity=0.052 Sum_probs=71.7
Q ss_pred EEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeC--CEEEEEeCCCCcEEEE
Q 023864 109 GLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ--KTGFIYDQNNLNKLEE 185 (276)
Q Consensus 109 GL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~--~~v~V~D~~tlk~i~~ 185 (276)
...|+|||+ |+.+....|...|.++|+++++..+-..-+.....--...++++|+....++ ..++++|.++.+. .+
T Consensus 247 ~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~-~~ 325 (430)
T PRK00178 247 APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA-ER 325 (430)
T ss_pred CeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE-EE
Confidence 578999974 6544444477899999999998654322221111112233567887776554 3688899887764 33
Q ss_pred EecCCCCe--eEEeeCCCEEEEEC---CCceEEEEcCCCCcE
Q 023864 186 FTHQMKDG--WGLATDGKVLFGSD---GSSMLYQIDPQTLKV 222 (276)
Q Consensus 186 ~~~~~~EG--WGLT~Dg~~L~vSD---GS~~L~viDp~t~~v 222 (276)
+....... -.+++||+.|+++. |...|+++|+++.+.
T Consensus 326 lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 326 VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV 367 (430)
T ss_pred eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE
Confidence 33321111 24689999987754 345799999998865
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0096 Score=58.63 Aligned_cols=113 Identities=12% Similarity=0.079 Sum_probs=72.5
Q ss_pred EEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeC--CEEEEEeCCCCcEEEE
Q 023864 109 GLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ--KTGFIYDQNNLNKLEE 185 (276)
Q Consensus 109 GL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~--~~v~V~D~~tlk~i~~ 185 (276)
...|+|||+ |+.+....|...|..+|++++++.+...-...........++++|+....++ ..++++|.++.+.. +
T Consensus 266 ~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~ 344 (448)
T PRK04792 266 APRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS-R 344 (448)
T ss_pred CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-E
Confidence 578999975 6554444477889999999998754322211112222344567787766554 46888998877643 3
Q ss_pred EecC--CCCeeEEeeCCCEEEEEC---CCceEEEEcCCCCcE
Q 023864 186 FTHQ--MKDGWGLATDGKVLFGSD---GSSMLYQIDPQTLKV 222 (276)
Q Consensus 186 ~~~~--~~EGWGLT~Dg~~L~vSD---GS~~L~viDp~t~~v 222 (276)
+... ...+-.+++||+.|+.+. |..+|+.+|+++.++
T Consensus 345 Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~ 386 (448)
T PRK04792 345 LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM 386 (448)
T ss_pred EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe
Confidence 3222 112234789999987753 456899999998875
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0018 Score=64.48 Aligned_cols=121 Identities=16% Similarity=0.206 Sum_probs=90.3
Q ss_pred ceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCC--ceEEEEEEe-CCEEEEEEeeCCEEEEEeCCCCcE
Q 023864 107 TQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGS--YFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNLNK 182 (276)
Q Consensus 107 TQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~--~FgEGit~~-g~~LyqlTwk~~~v~V~D~~tlk~ 182 (276)
.|-.+|.++|+ ...++| -.-.++.||++++|+..-.++... .+-|-+.+. .+....+.=+++-+.+.-..|.+.
T Consensus 260 i~~a~f~p~G~~~i~~s~--rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el 337 (514)
T KOG2055|consen 260 IQKAEFAPNGHSVIFTSG--RRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL 337 (514)
T ss_pred cceeeecCCCceEEEecc--cceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh
Confidence 36778888886 444455 466789999999998665544422 233444443 345666677889999999999999
Q ss_pred EEEEecC-CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEee
Q 023864 183 LEEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVR 229 (276)
Q Consensus 183 i~~~~~~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~ 229 (276)
+.+|..+ .--+..++.||+.||++.|...|+++|..+.+++++....
T Consensus 338 i~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~ 385 (514)
T KOG2055|consen 338 ITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDD 385 (514)
T ss_pred hheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeec
Confidence 9999976 1134447789999999999999999999999888877653
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.014 Score=59.14 Aligned_cols=123 Identities=15% Similarity=0.181 Sum_probs=89.4
Q ss_pred EEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEee------
Q 023864 95 VVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL------ 168 (276)
Q Consensus 95 Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk------ 168 (276)
--.++.+ .+.|++-..|+|||.+|.++| .+-+|..||-.||+.+..+.-. ..+.+-+|.+.|.
T Consensus 182 Fk~s~r~-HskFV~~VRysPDG~~Fat~g--sDgki~iyDGktge~vg~l~~~--------~aHkGsIfalsWsPDs~~~ 250 (603)
T KOG0318|consen 182 FKSSFRE-HSKFVNCVRYSPDGSRFATAG--SDGKIYIYDGKTGEKVGELEDS--------DAHKGSIFALSWSPDSTQF 250 (603)
T ss_pred eeecccc-cccceeeEEECCCCCeEEEec--CCccEEEEcCCCccEEEEecCC--------CCccccEEEEEECCCCceE
Confidence 3334432 467999999999999999999 8999999999999876654311 1233556666665
Q ss_pred -----CCEEEEEeCCCCcEEEEEecCC---CCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEe
Q 023864 169 -----QKTGFIYDQNNLNKLEEFTHQM---KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIV 228 (276)
Q Consensus 169 -----~~~v~V~D~~tlk~i~~~~~~~---~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V 228 (276)
+.++-++|.++.+++++++.+. .+=.|.-..++.|+.-.=+..|.+++|.+.++.+.|.=
T Consensus 251 ~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~G 318 (603)
T KOG0318|consen 251 LTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISG 318 (603)
T ss_pred EEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecc
Confidence 5778899999999999998761 23344334466766655578899999999887655543
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0083 Score=61.38 Aligned_cols=156 Identities=18% Similarity=0.204 Sum_probs=106.7
Q ss_pred EEEEecCCEEEEEcCCCCC---CeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEe------eCCEEEEEeCCC
Q 023864 109 GLLYAENDTLFESTGLYGR---SSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW------LQKTGFIYDQNN 179 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg~---S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTw------k~~~v~V~D~~t 179 (276)
|+... +|.||..+|.-|. ++|-+||+.+.+-....++.....+-|.+..+++||++-= .=+.+..||+.|
T Consensus 375 ~v~~l-~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t 453 (571)
T KOG4441|consen 375 GVAVL-DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPET 453 (571)
T ss_pred eeEEE-CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCC
Confidence 77776 5899998887654 4588999999987777777778889999999999999975 236788999976
Q ss_pred Cc--EEEEEecCCCCeeEEeeCCCEEEEECC------CceEEEEcCCCCcEEEEE--EeeeCCEeeeeeeeeEEECCEEE
Q 023864 180 LN--KLEEFTHQMKDGWGLATDGKVLFGSDG------SSMLYQIDPQTLKVIRKD--IVRYKGREVRNLNELEFIKGEVW 249 (276)
Q Consensus 180 lk--~i~~~~~~~~EGWGLT~Dg~~L~vSDG------S~~L~viDp~t~~vi~~I--~V~~~g~pv~~lNELE~idG~ly 249 (276)
-+ .+...+.+ .-|-|++.-+..||+-=| -++|...||++.+...-- .....+.-+.-++.+-|+-|- |
T Consensus 454 ~~W~~~~~M~~~-R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG-~ 531 (571)
T KOG4441|consen 454 NTWTLIAPMNTR-RSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG-F 531 (571)
T ss_pred CceeecCCcccc-cccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEec-c
Confidence 65 44555554 567778888888888444 335788999998775432 222222222223323333222 3
Q ss_pred EEeCCCCCeEEEEeCCCCc
Q 023864 250 ANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 250 ANvw~s~d~I~vIDp~T~~ 268 (276)
-+.-.. +.|-..||+|++
T Consensus 532 ~~~~~l-~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 532 DGNNNL-NTVECYDPETDT 549 (571)
T ss_pred cCcccc-ceeEEcCCCCCc
Confidence 344455 788899999976
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.021 Score=56.77 Aligned_cols=153 Identities=11% Similarity=0.038 Sum_probs=97.5
Q ss_pred EEEEecCCEEEEEcCCCC---CCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEee------CCEEEEEeCCC
Q 023864 109 GLLYAENDTLFESTGLYG---RSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL------QKTGFIYDQNN 179 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg---~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk------~~~v~V~D~~t 179 (276)
+++.. +|+||.-+|..+ .+.+.+||+.+++-....++|....+-+.+..+++||+.-=. -+.+.+||+.+
T Consensus 337 ~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t 415 (534)
T PHA03098 337 GVTVF-NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNT 415 (534)
T ss_pred eEEEE-CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCC
Confidence 55555 589998777542 356889999998876655666545566778889999998542 15789999886
Q ss_pred CcE--EEEEecCCCCeeEEeeCCCEEEEECCC---------ceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEE
Q 023864 180 LNK--LEEFTHQMKDGWGLATDGKVLFGSDGS---------SMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEV 248 (276)
Q Consensus 180 lk~--i~~~~~~~~EGWGLT~Dg~~L~vSDGS---------~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~l 248 (276)
.+- +..++.+ ..|-+.+..++.+|+--|. +.++.+||++.+-... ..-..|..+. -+...+|+|
T Consensus 416 ~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~---~~~~~~r~~~-~~~~~~~~i 490 (534)
T PHA03098 416 NKWSKGSPLPIS-HYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTEL---SSLNFPRINA-SLCIFNNKI 490 (534)
T ss_pred CeeeecCCCCcc-ccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeC---CCCCcccccc-eEEEECCEE
Confidence 543 3334443 2444555556678886552 3499999999876432 1111111111 233458888
Q ss_pred EEEeCC-----CCCeEEEEeCCCCc
Q 023864 249 WANVWQ-----VWPCIPYAYLQAFG 268 (276)
Q Consensus 249 yANvw~-----s~d~I~vIDp~T~~ 268 (276)
|+==.. . +.|.+-||++++
T Consensus 491 yv~GG~~~~~~~-~~v~~yd~~~~~ 514 (534)
T PHA03098 491 YVVGGDKYEYYI-NEIEVYDDKTNT 514 (534)
T ss_pred EEEcCCcCCccc-ceeEEEeCCCCE
Confidence 863221 4 689999999865
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.023 Score=55.25 Aligned_cols=154 Identities=8% Similarity=0.035 Sum_probs=89.5
Q ss_pred eEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeC--CEEEEEeCCCCcEEE
Q 023864 108 QGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ--KTGFIYDQNNLNKLE 184 (276)
Q Consensus 108 QGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~--~~v~V~D~~tlk~i~ 184 (276)
.+..|+|||+ |+.+...-|...|..+|++++++.+-..-+.....-....++++|+...-.+ ..++++|.++.+. .
T Consensus 249 ~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~ 327 (435)
T PRK05137 249 FAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-R 327 (435)
T ss_pred cCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-E
Confidence 4678999984 6544444477889999999998754332221111122344566776655443 3789999877554 3
Q ss_pred EEecCC--CCeeEEeeCCCEEEEEC---CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCE-E-EEEeCCCC
Q 023864 185 EFTHQM--KDGWGLATDGKVLFGSD---GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGE-V-WANVWQVW 256 (276)
Q Consensus 185 ~~~~~~--~EGWGLT~Dg~~L~vSD---GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~-l-yANvw~s~ 256 (276)
++.... -..-..++||+.|+++. |..+|+++|+++... +.+.-+ . ......|. ||+ | |+..-...
T Consensus 328 ~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~---~---~~~~p~~spDG~~i~~~~~~~~~ 400 (435)
T PRK05137 328 RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSG---F---LVEGPTWAPNGRVIMFFRQTPGS 400 (435)
T ss_pred EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCC---C---CCCCCeECCCCCEEEEEEccCCC
Confidence 443320 11234789999987643 346899999876543 333221 1 12233455 554 4 44432221
Q ss_pred ---CeEEEEeCCCCcE
Q 023864 257 ---PCIPYAYLQAFGS 269 (276)
Q Consensus 257 ---d~I~vIDp~T~~v 269 (276)
..+.++|...+.+
T Consensus 401 ~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 401 GGAPKLYTVDLTGRNE 416 (435)
T ss_pred CCcceEEEEECCCCce
Confidence 2699999877554
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.018 Score=58.04 Aligned_cols=131 Identities=8% Similarity=0.079 Sum_probs=85.2
Q ss_pred EEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEE---eeC
Q 023864 95 VVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVT---WLQ 169 (276)
Q Consensus 95 Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlT---wk~ 169 (276)
.+.++.. .......+.|++||.++.+++ .+..|+.||+.+++.+....-....-...+... ++.++.+- ..+
T Consensus 160 ~~~~l~~-h~~~V~sla~spdG~lLatgs--~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~D 236 (493)
T PTZ00421 160 AVEVIKC-HSDQITSLEWNLDGSLLCTTS--KDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQ 236 (493)
T ss_pred EEEEEcC-CCCceEEEEEECCCCEEEEec--CCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCC
Confidence 4455542 234568999999998887777 778999999999998776543322211222222 34444433 247
Q ss_pred CEEEEEeCCCCc-EEEEEecCCCCeeE---EeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEe
Q 023864 170 KTGFIYDQNNLN-KLEEFTHQMKDGWG---LATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIV 228 (276)
Q Consensus 170 ~~v~V~D~~tlk-~i~~~~~~~~EGWG---LT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V 228 (276)
+.+.+||..+++ .+..+......+.. +.+|++.||++- |+..|.++|..+.+.+.....
T Consensus 237 r~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~ 300 (493)
T PTZ00421 237 RQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSY 300 (493)
T ss_pred CeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeec
Confidence 899999998765 33444332112222 356889998854 788999999999887765544
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.039 Score=51.41 Aligned_cols=127 Identities=14% Similarity=0.163 Sum_probs=78.8
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCC---CeEEEEeCCCCcE----EEEeecCCCceEEEEEEeCCEEEEEE
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGR---SSVRRVALETGKV----EAINQMEGSYFGEGLTLLGEKLFQVT 166 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~---S~I~~iDl~tgkv----~~~~~l~~~~FgEGit~~g~~LyqlT 166 (276)
..+...|. +.++- +.+.. ++.||.-.|..+. +.+.+||+.+.+- ....++|.....-+.++.+++||++-
T Consensus 54 ~~~~~lp~-~r~~~-~~~~~-~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~G 130 (323)
T TIGR03548 54 VKDGQLPY-EAAYG-ASVSV-ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGG 130 (323)
T ss_pred EEcccCCc-cccce-EEEEE-CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEe
Confidence 33445554 33331 33333 5789987775432 6788999988764 22335665445567788899999985
Q ss_pred ee-----CCEEEEEeCCCCcE--EEEEecCCCCeeEEeeCCCEEEEECCC-----ceEEEEcCCCCcEE
Q 023864 167 WL-----QKTGFIYDQNNLNK--LEEFTHQMKDGWGLATDGKVLFGSDGS-----SMLYQIDPQTLKVI 223 (276)
Q Consensus 167 wk-----~~~v~V~D~~tlk~--i~~~~~~~~EGWGLT~Dg~~L~vSDGS-----~~L~viDp~t~~vi 223 (276)
=. .+.+.+||+.+.+- +..++.+...+..++.-++.||+--|. ..++.+||++.+-.
T Consensus 131 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 131 GNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 32 46899999876553 333443223444555556678886542 35778999987654
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.032 Score=52.45 Aligned_cols=155 Identities=8% Similarity=-0.004 Sum_probs=91.1
Q ss_pred EEEecCCEEEEEcCCCCC---CeEEEEeCCCCcEEEEeec-----CCCceEEEEEEeCCEEEEEEeeC-----------C
Q 023864 110 LLYAENDTLFESTGLYGR---SSVRRVALETGKVEAINQM-----EGSYFGEGLTLLGEKLFQVTWLQ-----------K 170 (276)
Q Consensus 110 L~~~~dg~LyeStG~yg~---S~I~~iDl~tgkv~~~~~l-----~~~~FgEGit~~g~~LyqlTwk~-----------~ 170 (276)
+... +++||.-.|..+. +.+.+||+++.+-....++ |....+-.++..+++||++-=.+ +
T Consensus 81 ~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 159 (341)
T PLN02153 81 MVAV-GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFR 159 (341)
T ss_pred EEEE-CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccc
Confidence 4444 4789987774333 4789999998875443344 43345567788899999983321 4
Q ss_pred EEEEEeCCCCcEEE--EEe--cCCCCeeEEeeCCCEEEEE---------CC-----CceEEEEcCCCCcEEEEEEeeeCC
Q 023864 171 TGFIYDQNNLNKLE--EFT--HQMKDGWGLATDGKVLFGS---------DG-----SSMLYQIDPQTLKVIRKDIVRYKG 232 (276)
Q Consensus 171 ~v~V~D~~tlk~i~--~~~--~~~~EGWGLT~Dg~~L~vS---------DG-----S~~L~viDp~t~~vi~~I~V~~~g 232 (276)
.+.+||+++.+-.. ... .+...|-+++.-+..+|+- .| .+.|+++||++.+-...-..+.
T Consensus 160 ~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~-- 237 (341)
T PLN02153 160 TIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGA-- 237 (341)
T ss_pred eEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCC--
Confidence 68899998765432 111 0123455555444455552 11 4689999999987654221111
Q ss_pred Eeeee-eeeeEEECCEEEEEeCC--------------CCCeEEEEeCCCCc
Q 023864 233 REVRN-LNELEFIKGEVWANVWQ--------------VWPCIPYAYLQAFG 268 (276)
Q Consensus 233 ~pv~~-lNELE~idG~lyANvw~--------------s~d~I~vIDp~T~~ 268 (276)
.|..+ ...+...+++||+--.. . |.|.+.|+++.+
T Consensus 238 ~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~-n~v~~~d~~~~~ 287 (341)
T PLN02153 238 KPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLS-NEGYALDTETLV 287 (341)
T ss_pred CCCCcceeeeEEECCEEEEECcccCCcccccccccccc-ccEEEEEcCccE
Confidence 11111 12234556776654332 4 579999998854
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.034 Score=52.28 Aligned_cols=156 Identities=13% Similarity=0.144 Sum_probs=92.5
Q ss_pred EEEEecCCEEEEEcCCCC-----CCeEEEEeCCCCcEEEEeecCC--C--ceEEEEEEeCCEEEEEEee-----CCEEEE
Q 023864 109 GLLYAENDTLFESTGLYG-----RSSVRRVALETGKVEAINQMEG--S--YFGEGLTLLGEKLFQVTWL-----QKTGFI 174 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg-----~S~I~~iDl~tgkv~~~~~l~~--~--~FgEGit~~g~~LyqlTwk-----~~~v~V 174 (276)
++... ++.||+-.|..+ .+.+.+||+.+.+-....+++. + ..+-.++..+++||+.-=. -+.+++
T Consensus 27 ~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~ 105 (341)
T PLN02153 27 GIAVV-GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYS 105 (341)
T ss_pred eEEEE-CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEE
Confidence 56665 478998777532 2579999999987654444332 2 2355677889999998432 257899
Q ss_pred EeCCCCcE--EEEE-----ecCCCCeeEEeeCCCEEEEECCC------------ceEEEEcCCCCcEEEEEEeeeCCEee
Q 023864 175 YDQNNLNK--LEEF-----THQMKDGWGLATDGKVLFGSDGS------------SMLYQIDPQTLKVIRKDIVRYKGREV 235 (276)
Q Consensus 175 ~D~~tlk~--i~~~-----~~~~~EGWGLT~Dg~~L~vSDGS------------~~L~viDp~t~~vi~~I~V~~~g~pv 235 (276)
||+.+.+- +... +.+ ..+-+++..++.||+-=|. +.|.++||++.+-.. +.......+-
T Consensus 106 yd~~t~~W~~~~~~~~~~~p~~-R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~-l~~~~~~~~~ 183 (341)
T PLN02153 106 YDTVKNEWTFLTKLDEEGGPEA-RTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQ-LPDPGENFEK 183 (341)
T ss_pred EECCCCEEEEeccCCCCCCCCC-ceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEee-CCCCCCCCCC
Confidence 99987543 3332 222 2344555556678875431 368899999886653 2111000000
Q ss_pred eeeeeeEEECCEEEEEe-------------CCCCCeEEEEeCCCCc
Q 023864 236 RNLNELEFIKGEVWANV-------------WQVWPCIPYAYLQAFG 268 (276)
Q Consensus 236 ~~lNELE~idG~lyANv-------------w~s~d~I~vIDp~T~~ 268 (276)
..---+...+|+||+-= ... +.|.+.||++.+
T Consensus 184 r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~-~~v~~yd~~~~~ 228 (341)
T PLN02153 184 RGGAGFAVVQGKIWVVYGFATSILPGGKSDYES-NAVQFFDPASGK 228 (341)
T ss_pred CCcceEEEECCeEEEEeccccccccCCccceec-CceEEEEcCCCc
Confidence 00012345688888631 125 779999999865
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.011 Score=58.71 Aligned_cols=152 Identities=11% Similarity=-0.078 Sum_probs=98.6
Q ss_pred EEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEee---CCEEEEEeCCCCcEEE-
Q 023864 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL---QKTGFIYDQNNLNKLE- 184 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk---~~~v~V~D~~tlk~i~- 184 (276)
++... +|+||...|.-+.+++.+||+.+++-....+++....+-+.+..+++||++-=. .+.+..||+.+-+-..
T Consensus 313 ~~v~~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~ 391 (480)
T PHA02790 313 SGVPA-NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFG 391 (480)
T ss_pred eEEEE-CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeC
Confidence 45544 589999888545578999999998877666777655566788899999998432 3567889987655432
Q ss_pred -EEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCC-----CCCe
Q 023864 185 -EFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQ-----VWPC 258 (276)
Q Consensus 185 -~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~-----s~d~ 258 (276)
..+.+ ..+-+.+.-++.||+--|. +.+.||++.+-..- ..-..|- .-..+...+|+||+-=.. . +.
T Consensus 392 ~~m~~~-r~~~~~~~~~~~IYv~GG~--~e~ydp~~~~W~~~---~~m~~~r-~~~~~~v~~~~IYviGG~~~~~~~-~~ 463 (480)
T PHA02790 392 PSTYYP-HYKSCALVFGRRLFLVGRN--AEFYCESSNTWTLI---DDPIYPR-DNPELIIVDNKLLLIGGFYRGSYI-DT 463 (480)
T ss_pred CCCCCc-cccceEEEECCEEEEECCc--eEEecCCCCcEeEc---CCCCCCc-cccEEEEECCEEEEECCcCCCccc-ce
Confidence 23333 2333454556688886664 56789988765421 1111111 112345778999975332 3 57
Q ss_pred EEEEeCCCCcE
Q 023864 259 IPYAYLQAFGS 269 (276)
Q Consensus 259 I~vIDp~T~~v 269 (276)
|-+-||++++=
T Consensus 464 ve~Yd~~~~~W 474 (480)
T PHA02790 464 IEVYNNRTYSW 474 (480)
T ss_pred EEEEECCCCeE
Confidence 88899998763
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.016 Score=54.44 Aligned_cols=141 Identities=16% Similarity=0.175 Sum_probs=95.0
Q ss_pred EEE-ecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEec
Q 023864 110 LLY-AENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTH 188 (276)
Q Consensus 110 L~~-~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~ 188 (276)
+.| +.|..++ |+- ..-.||.||-.||+.++++.++..+= .+.+..+-=|+.+-....+..+|+++|++++.+..
T Consensus 149 v~wc~eD~~iL-SSa--dd~tVRLWD~rTgt~v~sL~~~s~Vt--SlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~ 223 (334)
T KOG0278|consen 149 VLWCHEDKCIL-SSA--DDKTVRLWDHRTGTEVQSLEFNSPVT--SLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKM 223 (334)
T ss_pred EEEeccCceEE-eec--cCCceEEEEeccCcEEEEEecCCCCc--ceeeccCCCEEEEecCceeEEeccccccceeeccC
Confidence 344 3444455 443 67789999999999999998886633 44554443345555677888899999999999987
Q ss_pred C-CCCeeEEeeCCCEEEEECC-CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCCCCCeEEE
Q 023864 189 Q-MKDGWGLATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQVWPCIPY 261 (276)
Q Consensus 189 ~-~~EGWGLT~Dg~~L~vSDG-S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~s~d~I~v 261 (276)
| .-+--.|.|+. ..||.-| .-.++.+|=.|++.+..- +.-.-.||+-+ -|. ||++||.=-++ ..|..
T Consensus 224 P~nV~SASL~P~k-~~fVaGged~~~~kfDy~TgeEi~~~-nkgh~gpVhcV---rFSPdGE~yAsGSED-GTirl 293 (334)
T KOG0278|consen 224 PCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGEEIGSY-NKGHFGPVHCV---RFSPDGELYASGSED-GTIRL 293 (334)
T ss_pred ccccccccccCCC-ceEEecCcceEEEEEeccCCceeeec-ccCCCCceEEE---EECCCCceeeccCCC-ceEEE
Confidence 6 33555688877 6666555 668999999999888763 12122355522 133 78888875444 44443
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0099 Score=56.57 Aligned_cols=125 Identities=11% Similarity=0.049 Sum_probs=89.2
Q ss_pred EEecCCEEEEEcCCCCCCeEEEEeCCCC--cEEEEeecC--CCceEEEEEEeC-CEEEEEEeeCCEEEEEeCCCCcEEEE
Q 023864 111 LYAENDTLFESTGLYGRSSVRRVALETG--KVEAINQME--GSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNKLEE 185 (276)
Q Consensus 111 ~~~~dg~LyeStG~yg~S~I~~iDl~tg--kv~~~~~l~--~~~FgEGit~~g-~~LyqlTwk~~~v~V~D~~tlk~i~~ 185 (276)
+|+|.|-+|..+- +...|..||+..- ..-.+..++ ...=-++|...+ ++...++-..+.++++|+=+..++.+
T Consensus 147 AfDp~GLifA~~~--~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~t 224 (311)
T KOG1446|consen 147 AFDPEGLIFALAN--GSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKST 224 (311)
T ss_pred eECCCCcEEEEec--CCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeee
Confidence 5777777775433 5559999998753 122333333 222245666664 78888999999999999999999999
Q ss_pred EecCCCCe-----eEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeee
Q 023864 186 FTHQMKDG-----WGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNL 238 (276)
Q Consensus 186 ~~~~~~EG-----WGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~l 238 (276)
|.....+| --+|||++.++.+.+..+|++++.+|++.+....-. ++.|+.-+
T Consensus 225 fs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~ 281 (311)
T KOG1446|consen 225 FSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCV 281 (311)
T ss_pred EeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCcccc
Confidence 97542233 447899999999999999999999999887665543 34444433
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.026 Score=55.13 Aligned_cols=114 Identities=12% Similarity=0.089 Sum_probs=72.2
Q ss_pred EEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeC--CEEEEEeCCCCcEEEE
Q 023864 109 GLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ--KTGFIYDQNNLNKLEE 185 (276)
Q Consensus 109 GL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~--~~v~V~D~~tlk~i~~ 185 (276)
.+.|+|||+ |+.+....|...|..+|++++++.+...-+.....-....++++|+...-.+ ..++++|.++.+. .+
T Consensus 247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~ 325 (429)
T PRK03629 247 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QR 325 (429)
T ss_pred CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EE
Confidence 578999985 6554444577789999999998755433332222222333456675554433 3788889887654 34
Q ss_pred EecCC--CCeeEEeeCCCEEEEE-C--CCceEEEEcCCCCcEE
Q 023864 186 FTHQM--KDGWGLATDGKVLFGS-D--GSSMLYQIDPQTLKVI 223 (276)
Q Consensus 186 ~~~~~--~EGWGLT~Dg~~L~vS-D--GS~~L~viDp~t~~vi 223 (276)
+.... ...-.+++||+.|+.. . |...|+++|+++.+..
T Consensus 326 lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~ 368 (429)
T PRK03629 326 ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ 368 (429)
T ss_pred eecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence 43321 1234578999988663 2 4568999999988753
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.021 Score=58.47 Aligned_cols=169 Identities=18% Similarity=0.193 Sum_probs=119.4
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCEEEEEcCCC-C---CCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEe
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLY-G---RSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW 167 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~y-g---~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTw 167 (276)
...-+...|+....+ |..+.+ |.||..+|.. | -+.+-+||+.+++=....+|.....+.|++..++.||++-=
T Consensus 312 ~w~~~a~m~~~r~~~--~~~~~~-~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG 388 (571)
T KOG4441|consen 312 EWSSLAPMPSPRCRV--GVAVLN-GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGG 388 (571)
T ss_pred cEeecCCCCcccccc--cEEEEC-CEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEec
Confidence 344555556544444 888874 7999977744 2 26788999999997776788888888899999999999976
Q ss_pred eC-----CEEEEEeCCCCc--EEEEEecCCCCeeEEeeCCCEEEEECC----C---ceEEEEcCCCCcEEEEEEe--eeC
Q 023864 168 LQ-----KTGFIYDQNNLN--KLEEFTHQMKDGWGLATDGKVLFGSDG----S---SMLYQIDPQTLKVIRKDIV--RYK 231 (276)
Q Consensus 168 k~-----~~v~V~D~~tlk--~i~~~~~~~~EGWGLT~Dg~~L~vSDG----S---~~L~viDp~t~~vi~~I~V--~~~ 231 (276)
.+ +.+-.||+.+-+ ..+..... ..|-|.+.-++.||+.=| + +.+...||.|.+-...-+. ...
T Consensus 389 ~dg~~~l~svE~YDp~~~~W~~va~m~~~-r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~ 467 (571)
T KOG4441|consen 389 FDGEKSLNSVECYDPVTNKWTPVAPMLTR-RSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRS 467 (571)
T ss_pred cccccccccEEEecCCCCcccccCCCCcc-eeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccc
Confidence 55 457789987654 44444443 688899988889998654 3 5789999999877544333 333
Q ss_pred CEeeeeeeeeEEECCEEEEEeCCC----CCeEEEEeCCCCcEE
Q 023864 232 GREVRNLNELEFIKGEVWANVWQV----WPCIPYAYLQAFGSS 270 (276)
Q Consensus 232 g~pv~~lNELE~idG~lyANvw~s----~d~I~vIDp~T~~v~ 270 (276)
+.. +...||+|||-=..+ -+.|-+.||+|.+-.
T Consensus 468 ~~g------~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~ 504 (571)
T KOG4441|consen 468 GFG------VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWT 504 (571)
T ss_pred cce------EEEECCEEEEECCccCCCccceEEEEcCCCCcee
Confidence 333 345678888654432 135889999997744
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.11 Score=48.03 Aligned_cols=157 Identities=18% Similarity=0.200 Sum_probs=83.4
Q ss_pred eEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCC--CCcE----EEEeecC----CCceEEEEEEe--CC
Q 023864 93 IQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALE--TGKV----EAINQME----GSYFGEGLTLL--GE 160 (276)
Q Consensus 93 ~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~--tgkv----~~~~~l~----~~~FgEGit~~--g~ 160 (276)
-+|++++|.+...=++|+++.++|++..+.. ....|..++.+ +..+ ..++.++ .+.=-||++.+ ++
T Consensus 53 G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~E--r~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~ 130 (248)
T PF06977_consen 53 GKVLRRIPLDGFGDYEGITYLGNGRYVLSEE--RDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTN 130 (248)
T ss_dssp --EEEEEE-SS-SSEEEEEE-STTEEEEEET--TTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTT
T ss_pred CCEEEEEeCCCCCCceeEEEECCCEEEEEEc--CCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCC
Confidence 3789999986544469999998888777654 46677777763 3322 1233443 12224999997 58
Q ss_pred EEEEEEeeCC-EEEEEeC--C--CCcEEEEEec-----CCCCeeEEe--eCCCEE-EEECCCceEEEEcCCCCcEEEEEE
Q 023864 161 KLFQVTWLQK-TGFIYDQ--N--NLNKLEEFTH-----QMKDGWGLA--TDGKVL-FGSDGSSMLYQIDPQTLKVIRKDI 227 (276)
Q Consensus 161 ~LyqlTwk~~-~v~V~D~--~--tlk~i~~~~~-----~~~EGWGLT--~Dg~~L-~vSDGS~~L~viDp~t~~vi~~I~ 227 (276)
+||++..+.- .++-++. . .+........ .+..-=|++ +.-.+| +.||.+..|..+| .++++++...
T Consensus 131 ~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~ 209 (248)
T PF06977_consen 131 RLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLS 209 (248)
T ss_dssp EEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE
T ss_pred EEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEE
Confidence 9999876654 4566664 2 2222221111 112222444 443444 5599999999999 6699998888
Q ss_pred eee--CC--EeeeeeeeeEEE-CCEEEEEe
Q 023864 228 VRY--KG--REVRNLNELEFI-KGEVWANV 252 (276)
Q Consensus 228 V~~--~g--~pv~~lNELE~i-dG~lyANv 252 (276)
... .| +.+.++.-+.+. +|.||+..
T Consensus 210 L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 210 LDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp -STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred eCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 864 22 345566666666 68899765
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0015 Score=42.73 Aligned_cols=39 Identities=18% Similarity=0.144 Sum_probs=34.5
Q ss_pred eCCEEEEEEeeCCEEEEEeCCCCcEEEEEecCCCCeeEEe
Q 023864 158 LGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLA 197 (276)
Q Consensus 158 ~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~EGWGLT 197 (276)
++++||+.+|.++.+.++|+++++.+++++.+ .+.++++
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~ 40 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVA 40 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEE
Confidence 46899999999999999999999999999986 5677665
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.047 Score=51.68 Aligned_cols=171 Identities=13% Similarity=0.132 Sum_probs=116.0
Q ss_pred eEEEEEEe-cCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEe----
Q 023864 93 IQVVNEFP-HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW---- 167 (276)
Q Consensus 93 ~~Vv~~~P-hd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTw---- 167 (276)
-+.+.+|. |...-| -+.++.+.+... ||. .+.+++.||.+|||++++.+.+.-.-...+...|+.+-..|-
T Consensus 42 GerlGty~GHtGavW--~~Did~~s~~li-TGS-AD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg 117 (327)
T KOG0643|consen 42 GERLGTYDGHTGAVW--CCDIDWDSKHLI-TGS-ADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMG 117 (327)
T ss_pred CceeeeecCCCceEE--EEEecCCcceee-ecc-ccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcC
Confidence 36788885 533444 455554433333 563 678899999999999999998876555566666666655554
Q ss_pred eCCEEEEEeCC-------CCcEEEEEecC----CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEE-EEEEeeeCCEee
Q 023864 168 LQKTGFIYDQN-------NLNKLEEFTHQ----MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVI-RKDIVRYKGREV 235 (276)
Q Consensus 168 k~~~v~V~D~~-------tlk~i~~~~~~----~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi-~~I~V~~~g~pv 235 (276)
+...+.+||.. .-+++-.++.+ ...+||-. ++.|+.-+-+..|..+|..++++. ....+..
T Consensus 118 ~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l--~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~----- 190 (327)
T KOG0643|consen 118 YTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPL--GETIIAGHEDGSISIYDARTGKELVDSDEEHS----- 190 (327)
T ss_pred cceEEEEEEccCChhhhcccCceEEecCCccceeeeeeccc--CCEEEEecCCCcEEEEEcccCceeeechhhhc-----
Confidence 35778889987 33445566543 34577655 889999888899999999997553 3333322
Q ss_pred eeeeeeEEEC-CEEEEEeCCCCCeEEEEeCCCCcEEEEEEe
Q 023864 236 RNLNELEFIK-GEVWANVWQVWPCIPYAYLQAFGSSLVYVT 275 (276)
Q Consensus 236 ~~lNELE~id-G~lyANvw~s~d~I~vIDp~T~~v~l~~~~ 275 (276)
..+|.|.... +.-|+.--.+ ..--.+|..|.++.=.|.+
T Consensus 191 ~~Ind~q~s~d~T~FiT~s~D-ttakl~D~~tl~v~Kty~t 230 (327)
T KOG0643|consen 191 SKINDLQFSRDRTYFITGSKD-TTAKLVDVRTLEVLKTYTT 230 (327)
T ss_pred cccccccccCCcceEEecccC-ccceeeeccceeeEEEeee
Confidence 2788888774 4466665455 6777788888777766654
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.024 Score=55.67 Aligned_cols=150 Identities=13% Similarity=0.072 Sum_probs=90.4
Q ss_pred EEEEecCC-EEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCC--EEEEEeCCCCcEEEE
Q 023864 109 GLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK--TGFIYDQNNLNKLEE 185 (276)
Q Consensus 109 GL~~~~dg-~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~--~v~V~D~~tlk~i~~ 185 (276)
...|+||| +|..+...-|+..|..+|+++++..+-...+.....-....+|++||.+..+.+ .++++|.++.+.. +
T Consensus 237 ~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~-r 315 (419)
T PRK04043 237 VSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE-Q 315 (419)
T ss_pred eeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE-e
Confidence 35689997 455444445789999999999986544333322222235566788888876544 7999999887663 2
Q ss_pred EecCCCCeeEEeeCCCEEEE-ECCC--------ceEEEEcCCCCcEEEEEEeeeCCEeeeeeee-eEEE-CCE--EEEEe
Q 023864 186 FTHQMKDGWGLATDGKVLFG-SDGS--------SMLYQIDPQTLKVIRKDIVRYKGREVRNLNE-LEFI-KGE--VWANV 252 (276)
Q Consensus 186 ~~~~~~EGWGLT~Dg~~L~v-SDGS--------~~L~viDp~t~~vi~~I~V~~~g~pv~~lNE-LE~i-dG~--lyANv 252 (276)
+.+.......++|||+.|.. +... ..|+++|+++.+.. .+ +..+ .+| ..|. ||+ +|+..
T Consensus 316 lt~~g~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~L--T~~~-----~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 316 VVFHGKNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RL--TANG-----VNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred CccCCCcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-EC--CCCC-----CcCCeEECCCCCEEEEEEc
Confidence 32221122357899998755 4322 58999999988653 22 2221 122 2233 564 45554
Q ss_pred CCCCCeEEEEeCCCC
Q 023864 253 WQVWPCIPYAYLQAF 267 (276)
Q Consensus 253 w~s~d~I~vIDp~T~ 267 (276)
-.....+.++|..-.
T Consensus 388 ~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 388 LGNQSALGIIRLNYN 402 (419)
T ss_pred cCCcEEEEEEecCCC
Confidence 333145778887653
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0055 Score=57.93 Aligned_cols=111 Identities=20% Similarity=0.332 Sum_probs=79.5
Q ss_pred ceEEEEecCCEEEEEcCCCCC------CeEEEEeCCCCcEEEEeecCCCc--------------eEEEEEEeCC--EEEE
Q 023864 107 TQGLLYAENDTLFESTGLYGR------SSVRRVALETGKVEAINQMEGSY--------------FGEGLTLLGE--KLFQ 164 (276)
Q Consensus 107 TQGL~~~~dg~LyeStG~yg~------S~I~~iDl~tgkv~~~~~l~~~~--------------FgEGit~~g~--~Lyq 164 (276)
++||++.++|.+|+|.= +. ..|.++|.+ |++.+..++|..+ =-||||+..+ +||.
T Consensus 87 ~Egi~~~~~g~~~is~E--~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~ 163 (326)
T PF13449_consen 87 PEGIAVPPDGSFWISSE--GGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFA 163 (326)
T ss_pred hhHeEEecCCCEEEEeC--CccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEE
Confidence 57999977899998744 66 899999988 9988887666432 2399999754 6999
Q ss_pred EEeeC---------------CEEEEEeCCC-CcEEEEEecCCC------CeeEEe-----eCCCEEEE--EC-----CCc
Q 023864 165 VTWLQ---------------KTGFIYDQNN-LNKLEEFTHQMK------DGWGLA-----TDGKVLFG--SD-----GSS 210 (276)
Q Consensus 165 lTwk~---------------~~v~V~D~~t-lk~i~~~~~~~~------EGWGLT-----~Dg~~L~v--SD-----GS~ 210 (276)
++... -+++.||+.+ .+..++|.|+.. .+.+++ +|++.|++ +. -..
T Consensus 164 ~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ 243 (326)
T PF13449_consen 164 AMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYK 243 (326)
T ss_pred EECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceE
Confidence 98865 4678899987 667888887732 355543 35554444 21 156
Q ss_pred eEEEEcCCCC
Q 023864 211 MLYQIDPQTL 220 (276)
Q Consensus 211 ~L~viDp~t~ 220 (276)
+|+.+|....
T Consensus 244 ri~~v~l~~a 253 (326)
T PF13449_consen 244 RIYRVDLSDA 253 (326)
T ss_pred EEEEEEcccc
Confidence 8899987654
|
|
| >PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.036 Score=51.27 Aligned_cols=144 Identities=16% Similarity=0.230 Sum_probs=92.7
Q ss_pred EEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceE------------EEEEEeCCEEEEE---EeeCCE--
Q 023864 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFG------------EGLTLLGEKLFQV---TWLQKT-- 171 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~Fg------------EGit~~g~~Lyql---Twk~~~-- 171 (276)
|-.+. +|.||-- .++.+.|.+||+.++++.++..||..-|. .-++++..-||++ .-.++.
T Consensus 73 G~vVY-ngslYY~--~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~iv 149 (250)
T PF02191_consen 73 GHVVY-NGSLYYN--KYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIV 149 (250)
T ss_pred CeEEE-CCcEEEE--ecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEE
Confidence 44555 4777765 34899999999999999988888865554 5678888888887 333333
Q ss_pred EEEEeCCCCcEEEEEecC-----CCCeeEEeeCCCEEEEECCC----ceE-EEEcCCCCcEEEEEEeeeCCEeeeeeeee
Q 023864 172 GFIYDQNNLNKLEEFTHQ-----MKDGWGLATDGKVLFGSDGS----SML-YQIDPQTLKVIRKDIVRYKGREVRNLNEL 241 (276)
Q Consensus 172 v~V~D~~tlk~i~~~~~~-----~~EGWGLT~Dg~~L~vSDGS----~~L-~viDp~t~~vi~~I~V~~~g~pv~~lNEL 241 (276)
+..+|+++|++.+++.+. .++..=+| ..||+.+.. .+| +.+|..+.+.. .+.+.-. .+...+.-|
T Consensus 150 vskld~~tL~v~~tw~T~~~k~~~~naFmvC---GvLY~~~s~~~~~~~I~yafDt~t~~~~-~~~i~f~-~~~~~~~~l 224 (250)
T PF02191_consen 150 VSKLDPETLSVEQTWNTSYPKRSAGNAFMVC---GVLYATDSYDTRDTEIFYAFDTYTGKEE-DVSIPFP-NPYGNISML 224 (250)
T ss_pred EEeeCcccCceEEEEEeccCchhhcceeeEe---eEEEEEEECCCCCcEEEEEEECCCCcee-ceeeeec-cccCceEee
Confidence 345999999999999754 12222244 478886632 334 77899988775 3444321 122233334
Q ss_pred EEE--CCEEEEEeCCCCCeEEEEe
Q 023864 242 EFI--KGEVWANVWQVWPCIPYAY 263 (276)
Q Consensus 242 E~i--dG~lyANvw~s~d~I~vID 263 (276)
.|- |.+||+ |.. ..++.-|
T Consensus 225 ~YNP~dk~LY~--wd~-G~~v~Y~ 245 (250)
T PF02191_consen 225 SYNPRDKKLYA--WDN-GYQVTYD 245 (250)
T ss_pred eECCCCCeEEE--EEC-CeEEEEE
Confidence 454 667885 444 4555444
|
Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.041 Score=52.10 Aligned_cols=146 Identities=14% Similarity=0.155 Sum_probs=103.5
Q ss_pred EEEecCC-E-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe-CCEEEEEEeeCCEEEEEeCCCCcEEEEE
Q 023864 110 LLYAEND-T-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (276)
Q Consensus 110 L~~~~dg-~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~-g~~LyqlTwk~~~v~V~D~~tlk~i~~~ 186 (276)
|.+.+|- + +|. |- -...+..+|+.+|++.=+..++.+. |+-+.. ||. .++--+++.+++++.+|.+++..|
T Consensus 16 LVV~~dskT~v~i--gS-Hs~~~~avd~~sG~~~We~ilg~Ri--E~sa~vvgdf-VV~GCy~g~lYfl~~~tGs~~w~f 89 (354)
T KOG4649|consen 16 LVVCNDSKTLVVI--GS-HSGIVIAVDPQSGNLIWEAILGVRI--ECSAIVVGDF-VVLGCYSGGLYFLCVKTGSQIWNF 89 (354)
T ss_pred EEEecCCceEEEE--ec-CCceEEEecCCCCcEEeehhhCcee--eeeeEEECCE-EEEEEccCcEEEEEecchhheeee
Confidence 4555553 3 343 31 3456778999999999998898874 555544 555 788889999999999999998888
Q ss_pred ecC--CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEee-eeeeeeEEECCEEEEEeCCCCCeEEEEe
Q 023864 187 THQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREV-RNLNELEFIKGEVWANVWQVWPCIPYAY 263 (276)
Q Consensus 187 ~~~--~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv-~~lNELE~idG~lyANvw~s~d~I~vID 263 (276)
... .+----..+|++-+|...-..+.|.+|+.+..-+-+.+.+- +..+ .-+| -.++.|||++ .. ..++.+.
T Consensus 90 ~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG-~~f~sP~i~---~g~~sly~a~-t~-G~vlavt 163 (354)
T KOG4649|consen 90 VILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGG-GTFVSPVIA---PGDGSLYAAI-TA-GAVLAVT 163 (354)
T ss_pred eehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCC-ceeccceec---CCCceEEEEe-cc-ceEEEEc
Confidence 643 11111367899999998888899999999988776654432 2111 1222 3478899998 66 7888888
Q ss_pred CCCC
Q 023864 264 LQAF 267 (276)
Q Consensus 264 p~T~ 267 (276)
++++
T Consensus 164 ~~~~ 167 (354)
T KOG4649|consen 164 KNPY 167 (354)
T ss_pred cCCC
Confidence 8875
|
|
| >PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.058 Score=49.89 Aligned_cols=151 Identities=15% Similarity=0.207 Sum_probs=108.0
Q ss_pred CEEEEEcCCCCCCeEEEEe----C-CCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEecC-
Q 023864 116 DTLFESTGLYGRSSVRRVA----L-ETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ- 189 (276)
Q Consensus 116 g~LyeStG~yg~S~I~~iD----l-~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~- 189 (276)
+++|.-.+..+. .|..|. + ..++..+.+.||-..-|-|-.+.|+-||---.....+..||..+.++..+...+
T Consensus 31 ~~iy~~~~~~~~-~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~~s~~IvkydL~t~~v~~~~~L~~ 109 (250)
T PF02191_consen 31 EKIYVTSGFSGN-TVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKYNSRNIVKYDLTTRSVVARRELPG 109 (250)
T ss_pred CCEEEECccCCC-EEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEecCCceEEEEECcCCcEEEEEECCc
Confidence 578887775555 777773 4 566777888899777799999999999988889999999999999988665433
Q ss_pred ------CCCeeE------EeeCCCEEEE---ECCC---ceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEE
Q 023864 190 ------MKDGWG------LATDGKVLFG---SDGS---SMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWAN 251 (276)
Q Consensus 190 ------~~EGWG------LT~Dg~~L~v---SDGS---~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyAN 251 (276)
.+..|+ |+-|..=||| +..+ =.|..+||+++++++++.+....+.+.+. =.+=|.|||-
T Consensus 110 A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T~~~k~~~~na---FmvCGvLY~~ 186 (250)
T PF02191_consen 110 AGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNTSYPKRSAGNA---FMVCGVLYAT 186 (250)
T ss_pred cccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEeccCchhhcce---eeEeeEEEEE
Confidence 012222 7778876666 3332 35788999999999999988655554433 3667889965
Q ss_pred eCCCC---CeEEEEeCCCCcEE
Q 023864 252 VWQVW---PCIPYAYLQAFGSS 270 (276)
Q Consensus 252 vw~s~---d~I~vIDp~T~~v~ 270 (276)
--.+. .--.+.|+.|++..
T Consensus 187 ~s~~~~~~~I~yafDt~t~~~~ 208 (250)
T PF02191_consen 187 DSYDTRDTEIFYAFDTYTGKEE 208 (250)
T ss_pred EECCCCCcEEEEEEECCCCcee
Confidence 54430 23466788776543
|
Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.049 Score=54.20 Aligned_cols=152 Identities=9% Similarity=0.053 Sum_probs=96.9
Q ss_pred EEEEecCCEEEEEcCCCCC----CeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEee-----CCEEEEEeCCC
Q 023864 109 GLLYAENDTLFESTGLYGR----SSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL-----QKTGFIYDQNN 179 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg~----S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk-----~~~v~V~D~~t 179 (276)
|.+.. ++.||.-+|.-+. +.+..||+.+++-....+++....+-+++..+++||++-=. -+.+.+||+.+
T Consensus 289 ~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~ 367 (534)
T PHA03098 289 GSVVL-NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGE 367 (534)
T ss_pred eEEEE-CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCC
Confidence 66665 4789987774322 46889999999886655566333445778889999998543 35688899876
Q ss_pred CcE--EEEEecCCCCeeEEeeCCCEEEEECC-------CceEEEEcCCCCcEEEEEEe--eeCCEeeeeeeeeEEECCEE
Q 023864 180 LNK--LEEFTHQMKDGWGLATDGKVLFGSDG-------SSMLYQIDPQTLKVIRKDIV--RYKGREVRNLNELEFIKGEV 248 (276)
Q Consensus 180 lk~--i~~~~~~~~EGWGLT~Dg~~L~vSDG-------S~~L~viDp~t~~vi~~I~V--~~~g~pv~~lNELE~idG~l 248 (276)
.+- +...+.+ ..+-+.+.-++.+|+--| .+.+..+||.+.+-...-.. ...+. -+...+|+|
T Consensus 368 ~~W~~~~~lp~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~------~~~~~~~~i 440 (534)
T PHA03098 368 SKWREEPPLIFP-RYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG------CAIYHDGKI 440 (534)
T ss_pred CceeeCCCcCcC-CccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc------eEEEECCEE
Confidence 553 3344444 345555656678888654 26799999998766432211 11111 133567888
Q ss_pred EEEeCCC-------CCeEEEEeCCCCc
Q 023864 249 WANVWQV-------WPCIPYAYLQAFG 268 (276)
Q Consensus 249 yANvw~s-------~d~I~vIDp~T~~ 268 (276)
|+-=..+ -+.+.+-||++++
T Consensus 441 yv~GG~~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 441 YVIGGISYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred EEECCccCCCCCcccceEEEecCCCCc
Confidence 8643321 0348889998865
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.011 Score=59.00 Aligned_cols=136 Identities=18% Similarity=0.244 Sum_probs=73.3
Q ss_pred eeEEEEEEec--CCCCCceEEEEecC-CEEEEE------------------cCCCCCCeEEEEeCCCCcEEEEeecCCCc
Q 023864 92 TIQVVNEFPH--DPRAFTQGLLYAEN-DTLFES------------------TGLYGRSSVRRVALETGKVEAINQMEGSY 150 (276)
Q Consensus 92 t~~Vv~~~Ph--d~~aFTQGL~~~~d-g~LyeS------------------tG~yg~S~I~~iDl~tgkv~~~~~l~~~~ 150 (276)
+++|+.+... ++..|-..+-+.+. +.+.-| .|.|| ++|++||+.++++++++.||+.-
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG-~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYG-HSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S---EEEEEETTTTEEEEEEES-TTE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhccccc-CeEEEEECCCCcEeeEEecCCCC
Confidence 4677777655 34555445555554 334432 23456 79999999999999999999641
Q ss_pred eEEEEEEe------CCEEEEEEeeCCEEEEEeC---CCCcEEEEEecC--CCCeeE-------------------EeeCC
Q 023864 151 FGEGLTLL------GEKLFQVTWLQKTGFIYDQ---NNLNKLEEFTHQ--MKDGWG-------------------LATDG 200 (276)
Q Consensus 151 FgEGit~~------g~~LyqlTwk~~~v~V~D~---~tlk~i~~~~~~--~~EGWG-------------------LT~Dg 200 (276)
+.=|.+. ...-|+-.-.+..++.|=. .+.+..+-+..+ --|||. |+.|+
T Consensus 245 -~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 245 -QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp -EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred -CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 1111221 2578888888888887644 333334444433 236773 45689
Q ss_pred CEEEEEC-CCceEEEEc---CCCCcEEEEEEee
Q 023864 201 KVLFGSD-GSSMLYQID---PQTLKVIRKDIVR 229 (276)
Q Consensus 201 ~~L~vSD-GS~~L~viD---p~t~~vi~~I~V~ 229 (276)
++||+|+ +...|...| |..-+++.+|.++
T Consensus 324 rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lG 356 (461)
T PF05694_consen 324 RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLG 356 (461)
T ss_dssp -EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-B
T ss_pred CEEEEEcccCCcEEEEecCCCCCCcEEeEEEEC
Confidence 9999999 888898887 5567788888876
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >smart00284 OLF Olfactomedin-like domains | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.034 Score=51.87 Aligned_cols=150 Identities=16% Similarity=0.141 Sum_probs=104.0
Q ss_pred CEEEEEcCC-CCCCeEEEE----eCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEecC-
Q 023864 116 DTLFESTGL-YGRSSVRRV----ALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ- 189 (276)
Q Consensus 116 g~LyeStG~-yg~S~I~~i----Dl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~- 189 (276)
++.|..-+. +..+.|+.| |+..++..+++.||...=|-|..+.|+-||---..+..+..||.++.++..+-..+
T Consensus 35 ~~~wv~~~~~~~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~ 114 (255)
T smart00284 35 SLYWYMPLNTRVLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNKFNSHDICRFDLTTETYQKEPLLNG 114 (255)
T ss_pred ceEEEEccccCCCcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEEEecCCccEEEEECCCCcEEEEEecCc
Confidence 467765432 245667776 45677777788899878899999999999997778899999999999886443222
Q ss_pred ------CCCeeE------EeeCCCEEEE---ECCC---ceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEE
Q 023864 190 ------MKDGWG------LATDGKVLFG---SDGS---SMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWAN 251 (276)
Q Consensus 190 ------~~EGWG------LT~Dg~~L~v---SDGS---~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyAN 251 (276)
.+..|| |+-|..=||+ +.++ =-|..+||+|++++.++.+....+.+. |.=.+=|.|||-
T Consensus 115 a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T~~~k~sa~---naFmvCGvLY~~ 191 (255)
T smart00284 115 AGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWITTYNKRSAS---NAFMICGILYVT 191 (255)
T ss_pred cccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEcCCCccccc---ccEEEeeEEEEE
Confidence 223343 7778876666 4432 245789999999999999976555544 333667899976
Q ss_pred eC-C-CCC-eEEEEeCCCCc
Q 023864 252 VW-Q-VWP-CIPYAYLQAFG 268 (276)
Q Consensus 252 vw-~-s~d-~I~vIDp~T~~ 268 (276)
.- . ... --.+-|+.|++
T Consensus 192 ~s~~~~~~~I~yayDt~t~~ 211 (255)
T smart00284 192 RSLGSKGEKVFYAYDTNTGK 211 (255)
T ss_pred ccCCCCCcEEEEEEECCCCc
Confidence 52 1 201 24566777754
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.021 Score=55.67 Aligned_cols=119 Identities=11% Similarity=0.179 Sum_probs=74.0
Q ss_pred eEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCC--EEEEEeCCCCcEEE
Q 023864 108 QGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK--TGFIYDQNNLNKLE 184 (276)
Q Consensus 108 QGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~--~v~V~D~~tlk~i~ 184 (276)
....|++||+ |+..+..-|...|..+|+++++..+...-+.......+..+|+.|+.....++ .++++|.++.+..
T Consensus 287 ~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~- 365 (427)
T PRK02889 287 TEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT- 365 (427)
T ss_pred cCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-
Confidence 3467999985 54434334677899999988876443321221222234445777776655443 6999999877643
Q ss_pred EEecC-CCCeeEEeeCCCEEEE-EC--CCceEEEEcCCCCcEEEEEEe
Q 023864 185 EFTHQ-MKDGWGLATDGKVLFG-SD--GSSMLYQIDPQTLKVIRKDIV 228 (276)
Q Consensus 185 ~~~~~-~~EGWGLT~Dg~~L~v-SD--GS~~L~viDp~t~~vi~~I~V 228 (276)
.+... ..+....++||+.|+. ++ |...|+.+|. +++..+.+..
T Consensus 366 ~lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~ 412 (427)
T PRK02889 366 ALTDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSV 412 (427)
T ss_pred EccCCCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeec
Confidence 33211 2345568899998755 54 5677999998 5666666653
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.031 Score=59.30 Aligned_cols=111 Identities=16% Similarity=0.105 Sum_probs=75.2
Q ss_pred CCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCc-------eEEEEEEe------------------CCEEEEEEeeC
Q 023864 115 NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSY-------FGEGLTLL------------------GEKLFQVTWLQ 169 (276)
Q Consensus 115 dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~-------FgEGit~~------------------g~~LyqlTwk~ 169 (276)
+|+||.++. .+.|..+|.+|||.+=+....... -+-|++.. ++++|+.|. +
T Consensus 194 gg~lYv~t~---~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~-D 269 (764)
T TIGR03074 194 GDTLYLCTP---HNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTS-D 269 (764)
T ss_pred CCEEEEECC---CCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecC-C
Confidence 589999876 468999999999987776543221 02244443 459999887 8
Q ss_pred CEEEEEeCCCCcEEEEEecCC-----------CCe-eEEee----CCCEEEEEC-C---------CceEEEEcCCCCcEE
Q 023864 170 KTGFIYDQNNLNKLEEFTHQM-----------KDG-WGLAT----DGKVLFGSD-G---------SSMLYQIDPQTLKVI 223 (276)
Q Consensus 170 ~~v~V~D~~tlk~i~~~~~~~-----------~EG-WGLT~----Dg~~L~vSD-G---------S~~L~viDp~t~~vi 223 (276)
++++.+|++|.+++.+|.... +.| +..+. .++.+|+.. + +..|+-+|++|++++
T Consensus 270 g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 270 ARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred CeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 899999999999998775320 111 22221 245666642 1 457999999999998
Q ss_pred EEEEee
Q 023864 224 RKDIVR 229 (276)
Q Consensus 224 ~~I~V~ 229 (276)
=+...+
T Consensus 350 W~~~~g 355 (764)
T TIGR03074 350 WAWDPG 355 (764)
T ss_pred eEEecC
Confidence 666553
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.026 Score=59.25 Aligned_cols=161 Identities=17% Similarity=0.128 Sum_probs=112.3
Q ss_pred CCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCC-ceEEEEEEeCCEEEEEEeeCCEEEEEeCC-CC
Q 023864 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGS-YFGEGLTLLGEKLFQVTWLQKTGFIYDQN-NL 180 (276)
Q Consensus 103 ~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~-~FgEGit~~g~~LyqlTwk~~~v~V~D~~-tl 180 (276)
|..| .-++.+|.|.|. ++|.-..=.|.+|+.+||+++....=-+. .++-.+..+++.|+-..| +++|-+||.= .-
T Consensus 435 p~Qf-scvavD~sGelV-~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SW-DkTVRiW~if~s~ 511 (893)
T KOG0291|consen 435 PIQF-SCVAVDPSGELV-CAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSW-DKTVRIWDIFSSS 511 (893)
T ss_pred ceee-eEEEEcCCCCEE-EeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccc-cceEEEEEeeccC
Confidence 5566 677787767765 46644555699999999998766432233 355567778899999998 6889999863 33
Q ss_pred cEEEEEecC-CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeee------------------CCEeeeeeeee
Q 023864 181 NKLEEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY------------------KGREVRNLNEL 241 (276)
Q Consensus 181 k~i~~~~~~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~------------------~g~pv~~lNEL 241 (276)
....+++.. .--+..+.|||+.|-|+-=+.+|.|+|++....+..|.-.. .++++. -|
T Consensus 512 ~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ft---ti 588 (893)
T KOG0291|consen 512 GTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFT---TI 588 (893)
T ss_pred ceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceE---EE
Confidence 455666654 22344567999999997777899999999988887776542 122222 23
Q ss_pred EEE-CCEEEEEeCCCCCeEEEEeCCCCcEEE
Q 023864 242 EFI-KGEVWANVWQVWPCIPYAYLQAFGSSL 271 (276)
Q Consensus 242 E~i-dG~lyANvw~s~d~I~vIDp~T~~v~l 271 (276)
+|. ||..-.+=..+ +.|-.+|..+ +++|
T Consensus 589 ~ySaDG~~IlAgG~s-n~iCiY~v~~-~vll 617 (893)
T KOG0291|consen 589 CYSADGKCILAGGES-NSICIYDVPE-GVLL 617 (893)
T ss_pred EEcCCCCEEEecCCc-ccEEEEECch-hhee
Confidence 343 77655555688 9999999998 5444
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.084 Score=49.62 Aligned_cols=187 Identities=13% Similarity=0.150 Sum_probs=107.7
Q ss_pred cccccccCCCCCCCCceeeeEE---EEEEecCCCCCceEEEEecC-CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC-
Q 023864 74 SSNMWIRFPGVDQSPSIYTIQV---VNEFPHDPRAFTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQMEG- 148 (276)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~t~~V---v~~~Phd~~aFTQGL~~~~d-g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~- 148 (276)
.+..|-.-.+.+..+.++..+. -+.|.|. +-+.-+.++|+ +.|+.++ .+..|++||+.+..-... .+|+
T Consensus 93 ~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~--spVn~vvlhpnQteLis~d---qsg~irvWDl~~~~c~~~-liPe~ 166 (311)
T KOG0315|consen 93 CDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN--SPVNTVVLHPNQTELISGD---QSGNIRVWDLGENSCTHE-LIPED 166 (311)
T ss_pred ecCeEEEecCCCceEEEEeccCcccchhccCC--CCcceEEecCCcceEEeec---CCCcEEEEEccCCccccc-cCCCC
Confidence 3455555444455444443332 2345552 44567888887 6788653 345799999987644322 3442
Q ss_pred CceEEEEEEeC-CEEEEEEeeCCEEEEEeCCCC------cEEEEEecCCCCeeE----EeeCCCEEEEECCCceEEEEcC
Q 023864 149 SYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNL------NKLEEFTHQMKDGWG----LATDGKVLFGSDGSSMLYQIDP 217 (276)
Q Consensus 149 ~~FgEGit~~g-~~LyqlTwk~~~v~V~D~~tl------k~i~~~~~~~~EGWG----LT~Dg~~L~vSDGS~~L~viDp 217 (276)
.-|-..+++.. +.....-...|.++|++.-+. +++.+|+ +.+|++ |+||+|+|-.+-...++.+++.
T Consensus 167 ~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~--ah~~~il~C~lSPd~k~lat~ssdktv~iwn~ 244 (311)
T KOG0315|consen 167 DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQ--AHNGHILRCLLSPDVKYLATCSSDKTVKIWNT 244 (311)
T ss_pred CcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhee--cccceEEEEEECCCCcEEEeecCCceEEEEec
Confidence 45667777753 444555556688999997553 3333443 458888 5799999988777889999999
Q ss_pred CCCcEEEEEEeeeCCEeeeeeeeeEE-ECCEEEEEeCCCCCeEEEEeCCCCcEEEEE
Q 023864 218 QTLKVIRKDIVRYKGREVRNLNELEF-IKGEVWANVWQVWPCIPYAYLQAFGSSLVY 273 (276)
Q Consensus 218 ~t~~vi~~I~V~~~g~pv~~lNELE~-idG~lyANvw~s~d~I~vIDp~T~~v~l~~ 273 (276)
++| ...+.....+.+=+. +-.+ .||+-.+.- .+|+.+-.=|+++++.+-.|
T Consensus 245 ~~~-~kle~~l~gh~rWvW---dc~FS~dg~YlvTa-ssd~~~rlW~~~~~k~v~qy 296 (311)
T KOG0315|consen 245 DDF-FKLELVLTGHQRWVW---DCAFSADGEYLVTA-SSDHTARLWDLSAGKEVRQY 296 (311)
T ss_pred CCc-eeeEEEeecCCceEE---eeeeccCccEEEec-CCCCceeecccccCceeeec
Confidence 999 333333221111110 0111 155422222 33144555577887765443
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.021 Score=56.75 Aligned_cols=108 Identities=11% Similarity=0.098 Sum_probs=74.9
Q ss_pred EEEEecCCEEEEEcCCCCC-CeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcE--EEE
Q 023864 109 GLLYAENDTLFESTGLYGR-SSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNK--LEE 185 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg~-S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~--i~~ 185 (276)
+.... +|+||..+|..+. +.+.+||+++++-....+++...++-+++..+++||++- +.+.+||+++-+- +..
T Consensus 357 ~~~~~-~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~~~~ 432 (480)
T PHA02790 357 AVASI-NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCESSNTWTLIDD 432 (480)
T ss_pred EEEEE-CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEEecCCCCcEeEcCC
Confidence 44444 5899998886543 568899999998766666775555667888999999985 5678899876543 444
Q ss_pred EecCCCCeeEEeeCCCEEEEECCC------ceEEEEcCCCCc
Q 023864 186 FTHQMKDGWGLATDGKVLFGSDGS------SMLYQIDPQTLK 221 (276)
Q Consensus 186 ~~~~~~EGWGLT~Dg~~L~vSDGS------~~L~viDp~t~~ 221 (276)
.+.+ ..+-|++.-+..||+-=|. +.+...||++.+
T Consensus 433 m~~~-r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 433 PIYP-RDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred CCCC-ccccEEEEECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 4444 4566777667778886552 456667776654
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.069 Score=50.79 Aligned_cols=142 Identities=15% Similarity=0.165 Sum_probs=91.2
Q ss_pred CCceEEEEecCCEEEEEcCC---------CCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeCCEEE
Q 023864 105 AFTQGLLYAENDTLFESTGL---------YGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGF 173 (276)
Q Consensus 105 aFTQGL~~~~dg~LyeStG~---------yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~~~v~ 173 (276)
....=+.++++|.+|.++-. +..-+|.++|+. |++++.. .+.-.++-||++. ++.||+.....++++
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~~~l~-~~~~~~~NGla~SpDg~tly~aDT~~~~i~ 188 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGVVRLL-DDDLTIPNGLAFSPDGKTLYVADTPANRIH 188 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCEEEee-cCcEEecCceEECCCCCEEEEEeCCCCeEE
Confidence 44455667788999988876 223479999984 4443332 1224455677774 679999999999999
Q ss_pred EEeCC--CCcEEEE---E--ec--CCCCeeEEeeCCCEEEEEC--CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeE
Q 023864 174 IYDQN--NLNKLEE---F--TH--QMKDGWGLATDGKVLFGSD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELE 242 (276)
Q Consensus 174 V~D~~--tlk~i~~---~--~~--~~~EGWGLT~Dg~~L~vSD--GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE 242 (276)
.||.+ +..+-++ + .. +.++|..+..||. ||++- |...|..++|+ ++.+++|.+-. ....+++
T Consensus 189 r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~--~~~t~~~--- 261 (307)
T COG3386 189 RYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN-LWVAAVWGGGRVVRFNPD-GKLLGEIKLPV--KRPTNPA--- 261 (307)
T ss_pred EEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC-EEEecccCCceEEEECCC-CcEEEEEECCC--CCCccce---
Confidence 99765 3333221 2 22 3567766766664 55443 45699999999 99999998863 1222332
Q ss_pred EEC---CEEEEEeCCC
Q 023864 243 FIK---GEVWANVWQV 255 (276)
Q Consensus 243 ~id---G~lyANvw~s 255 (276)
+.+ +.||+.--.+
T Consensus 262 FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 262 FGGPDLNTLYITSARS 277 (307)
T ss_pred EeCCCcCEEEEEecCC
Confidence 444 4688666444
|
|
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.022 Score=54.74 Aligned_cols=133 Identities=14% Similarity=0.092 Sum_probs=89.7
Q ss_pred CceeeeEEEEEEecCCCCCceEEEEecCCE-EEEEcCCCCCCe------------EEEEeCCCCcEEEEeecCCCceEEE
Q 023864 88 PSIYTIQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSS------------VRRVALETGKVEAINQMEGSYFGEG 154 (276)
Q Consensus 88 ~~~~t~~Vv~~~Phd~~aFTQGL~~~~dg~-LyeStG~yg~S~------------I~~iDl~tgkv~~~~~l~~~~FgEG 154 (276)
.|++...-+..+.....+=..||++. ||+ -|+++- +++. =-.+|.++++++. ..--|+|+
T Consensus 135 ~P~WkPpFIs~la~eDRCHLNGlA~~-~g~p~yVTa~--~~sD~~~gWR~~~~~gG~vidv~s~evl~----~GLsmPhS 207 (335)
T TIGR03032 135 VPLWKPPFISKLAPEDRCHLNGMALD-DGEPRYVTAL--SQSDVADGWREGRRDGGCVIDIPSGEVVA----SGLSMPHS 207 (335)
T ss_pred ccccCCccccccCccCceeecceeee-CCeEEEEEEe--eccCCcccccccccCCeEEEEeCCCCEEE----cCccCCcC
Confidence 34455555666644456667999998 465 676542 3321 2236666666543 23446666
Q ss_pred EEEeCCEEEEEEeeCCEEEEEeCCCCc--EEEEEecCCCCeeEEeeCCCEEEEECC----C----------------ceE
Q 023864 155 LTLLGEKLFQVTWLQKTGFIYDQNNLN--KLEEFTHQMKDGWGLATDGKVLFGSDG----S----------------SML 212 (276)
Q Consensus 155 it~~g~~LyqlTwk~~~v~V~D~~tlk--~i~~~~~~~~EGWGLT~Dg~~L~vSDG----S----------------~~L 212 (276)
--+++++||++++..+.+..+|+++.+ .+..++ +..-||...|..+||+-. + .-|
T Consensus 208 PRWhdgrLwvldsgtGev~~vD~~~G~~e~Va~vp---G~~rGL~f~G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv 284 (335)
T TIGR03032 208 PRWYQGKLWLLNSGRGELGYVDPQAGKFQPVAFLP---GFTRGLAFAGDFAFVGLSKLRESRVFGGLPIEERLDALGCGV 284 (335)
T ss_pred CcEeCCeEEEEECCCCEEEEEcCCCCcEEEEEECC---CCCcccceeCCEEEEEeccccCCCCcCCCchhhhhhhhcccE
Confidence 778899999999999999999987664 555554 233355555999999642 2 147
Q ss_pred EEEcCCCCcEEEEEEeee
Q 023864 213 YQIDPQTLKVIRKDIVRY 230 (276)
Q Consensus 213 ~viDp~t~~vi~~I~V~~ 230 (276)
.+||..|+.+++.+....
T Consensus 285 ~vidl~tG~vv~~l~feg 302 (335)
T TIGR03032 285 AVIDLNSGDVVHWLRFEG 302 (335)
T ss_pred EEEECCCCCEEEEEEeCC
Confidence 899999999998887763
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.083 Score=53.68 Aligned_cols=158 Identities=15% Similarity=0.168 Sum_probs=108.7
Q ss_pred EEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCC--ceEEEEEEeCCEEEEEEeeCCEEEEE
Q 023864 98 EFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGS--YFGEGLTLLGEKLFQVTWLQKTGFIY 175 (276)
Q Consensus 98 ~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~--~FgEGit~~g~~LyqlTwk~~~v~V~ 175 (276)
.-+|...-| +|.++||++=+.+++ ++-++++||..+++++++..++.. -==.|+-+.+++|..+. .++.+..+
T Consensus 231 ~~aHkGsIf--alsWsPDs~~~~T~S--aDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVS-l~G~in~l 305 (603)
T KOG0318|consen 231 SDAHKGSIF--ALSWSPDSTQFLTVS--ADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVS-LSGTINYL 305 (603)
T ss_pred CCCccccEE--EEEECCCCceEEEec--CCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEE-cCcEEEEe
Confidence 446877777 999999986555555 678999999999999999988865 22346666777777665 46788889
Q ss_pred eCCCCcEEEEEec-C-CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEEC-CEEEEEe
Q 023864 176 DQNNLNKLEEFTH-Q-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIK-GEVWANV 252 (276)
Q Consensus 176 D~~tlk~i~~~~~-~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~id-G~lyANv 252 (276)
++...+++..+.= . .-.-.++.+||++||-.+-...|.-+|-.++.--+.. + .++ -.+++-|...+ |+|+--=
T Consensus 306 n~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~--g-~~h-~nqI~~~~~~~~~~~~t~g 381 (603)
T KOG0318|consen 306 NPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLA--G-KGH-TNQIKGMAASESGELFTIG 381 (603)
T ss_pred cccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccc--c-ccc-cceEEEEeecCCCcEEEEe
Confidence 9999998887741 1 1133346789999999888889999998776432211 0 000 12444455555 6666444
Q ss_pred CCCCCeEEEEeCCC
Q 023864 253 WQVWPCIPYAYLQA 266 (276)
Q Consensus 253 w~s~d~I~vIDp~T 266 (276)
++ |.+-+|+.+-
T Consensus 382 -~D-d~l~~~~~~~ 393 (603)
T KOG0318|consen 382 -WD-DTLRVISLKD 393 (603)
T ss_pred -cC-CeEEEEeccc
Confidence 45 7888886643
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.051 Score=47.76 Aligned_cols=114 Identities=16% Similarity=0.140 Sum_probs=75.7
Q ss_pred CCCCeEEEEeCCCCcEEEEeecCCCceEEEEEE--eCCEEEEEE-eeCCEEEEEeCCCCcEEEEEecCCCCeeEEeeCCC
Q 023864 125 YGRSSVRRVALETGKVEAINQMEGSYFGEGLTL--LGEKLFQVT-WLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGK 201 (276)
Q Consensus 125 yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~--~g~~LyqlT-wk~~~v~V~D~~tlk~i~~~~~~~~EGWGLT~Dg~ 201 (276)
||+..|..++..... ...+.+...-=-..++. .++++.++. ....++.+||.+ .+++.+++.......-.+|+|+
T Consensus 36 ~~~~~l~~~~~~~~~-~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~~~~n~i~wsP~G~ 113 (194)
T PF08662_consen 36 YGEFELFYLNEKNIP-VESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGTQPRNTISWSPDGR 113 (194)
T ss_pred EeeEEEEEEecCCCc-cceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecCCCceEEEECCCCC
Confidence 577788888776654 35555554311234444 356777664 345689999996 7777777643223455779999
Q ss_pred EEEEEC-C--CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCE
Q 023864 202 VLFGSD-G--SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGE 247 (276)
Q Consensus 202 ~L~vSD-G--S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~ 247 (276)
.|.++. | ...|.++|.++.+.+.+..-. ..+.++|. ||+
T Consensus 114 ~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-------~~t~~~WsPdGr 156 (194)
T PF08662_consen 114 FLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-------DATDVEWSPDGR 156 (194)
T ss_pred EEEEEEccCCCcEEEEEECCCCEEeeccccC-------cEEEEEEcCCCC
Confidence 999875 3 457999999988887665432 34667787 565
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.062 Score=51.36 Aligned_cols=128 Identities=16% Similarity=0.166 Sum_probs=92.4
Q ss_pred eeEEEEEEecC-CCCCceEEEEecCC-EEEEEcCCC------C---------CCeEEEEeCCCCcEEEEeecC-------
Q 023864 92 TIQVVNEFPHD-PRAFTQGLLYAEND-TLFESTGLY------G---------RSSVRRVALETGKVEAINQME------- 147 (276)
Q Consensus 92 t~~Vv~~~Phd-~~aFTQGL~~~~dg-~LyeStG~y------g---------~S~I~~iDl~tgkv~~~~~l~------- 147 (276)
+|+.+.++|-. -.+ .=|.+.+|| +|.+..|.- | +++|.++|..+|+++.+..||
T Consensus 87 ~~~ri~E~~s~GIGP--Hel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS 164 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGP--HELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS 164 (305)
T ss_pred CcEEEeEecCCCcCh--hhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence 67888888731 111 135677887 788877742 1 267888899999887775542
Q ss_pred --------------------------------------------------CCceEEEEEEeC--CEEEEEEeeCCEEEEE
Q 023864 148 --------------------------------------------------GSYFGEGLTLLG--EKLFQVTWLQKTGFIY 175 (276)
Q Consensus 148 --------------------------------------------------~~~FgEGit~~g--~~LyqlTwk~~~v~V~ 175 (276)
-+-|+.-|++.. +.+.+..=+.+.+.+|
T Consensus 165 iRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~ 244 (305)
T PF07433_consen 165 IRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW 244 (305)
T ss_pred eeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence 012444566643 3566777788999999
Q ss_pred eCCCCcEEEEEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEE
Q 023864 176 DQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVI 223 (276)
Q Consensus 176 D~~tlk~i~~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi 223 (276)
|.++.+.++..+.+ ++.|+++.++-+.+|+|...+..+++.+.+..
T Consensus 245 d~~tg~~~~~~~l~--D~cGva~~~~~f~~ssG~G~~~~~~~~~~~~~ 290 (305)
T PF07433_consen 245 DAATGRLLGSVPLP--DACGVAPTDDGFLVSSGQGQLIRLSPDGPQPR 290 (305)
T ss_pred ECCCCCEeeccccC--ceeeeeecCCceEEeCCCccEEEccCcccccc
Confidence 99999999999875 99999887777888999999988888776554
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.1 Score=51.32 Aligned_cols=154 Identities=16% Similarity=0.106 Sum_probs=87.7
Q ss_pred EEecCCE----EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeC--CEEEE--EeCCCC--
Q 023864 111 LYAENDT----LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ--KTGFI--YDQNNL-- 180 (276)
Q Consensus 111 ~~~~dg~----LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~--~~v~V--~D~~tl-- 180 (276)
.|+|||+ +|.|.- -|...|.+.|+++|+..+-..++...+.--...+|++|..+.... ..+++ +|.++.
T Consensus 191 ~wSPDG~~~~~~y~S~~-~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~ 269 (428)
T PRK01029 191 TWMHIGSGFPYLYVSYK-LGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI 269 (428)
T ss_pred eEccCCCceEEEEEEcc-CCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCC
Confidence 6899863 346543 378899999999998766666776666555666777877666432 24555 465442
Q ss_pred cEEEEEec---CCCCeeEEeeCCCEE-EEEC--CCceEEEEcCCC-CcEEEEEEeeeCCEeeeeeeeeEEE-CCE--EEE
Q 023864 181 NKLEEFTH---QMKDGWGLATDGKVL-FGSD--GSSMLYQIDPQT-LKVIRKDIVRYKGREVRNLNELEFI-KGE--VWA 250 (276)
Q Consensus 181 k~i~~~~~---~~~EGWGLT~Dg~~L-~vSD--GS~~L~viDp~t-~~vi~~I~V~~~g~pv~~lNELE~i-dG~--lyA 250 (276)
.....+.. .....-.++|||+.| |++| |..+|+++|... ....+.+.-. +..+ .+..|. ||+ +|+
T Consensus 270 g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~--~~~~---~~p~wSPDG~~Laf~ 344 (428)
T PRK01029 270 GKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKK--YRNS---SCPAWSPDGKKIAFC 344 (428)
T ss_pred CcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccC--CCCc---cceeECCCCCEEEEE
Confidence 12222221 111223578999865 6676 667899988643 2222233221 1111 122243 554 344
Q ss_pred EeCCCCCeEEEEeCCCCcEE
Q 023864 251 NVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 251 Nvw~s~d~I~vIDp~T~~v~ 270 (276)
..-.....|.++|+++++..
T Consensus 345 ~~~~g~~~I~v~dl~~g~~~ 364 (428)
T PRK01029 345 SVIKGVRQICVYDLATGRDY 364 (428)
T ss_pred EcCCCCcEEEEEECCCCCeE
Confidence 33222157999999987653
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.023 Score=53.79 Aligned_cols=120 Identities=16% Similarity=0.174 Sum_probs=89.9
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCE
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKT 171 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~ 171 (276)
+.++.+.|+- .+.+..-++++|||.|..|.| .+..+.-||++.+|-+.. ++...---.+++..++.|.+---+..
T Consensus 181 ~~~l~~~~~g-h~~~v~t~~vSpDGslcasGg--kdg~~~LwdL~~~k~lys--l~a~~~v~sl~fspnrywL~~at~~s 255 (315)
T KOG0279|consen 181 NCQLRTTFIG-HSGYVNTVTVSPDGSLCASGG--KDGEAMLWDLNEGKNLYS--LEAFDIVNSLCFSPNRYWLCAATATS 255 (315)
T ss_pred Ccchhhcccc-ccccEEEEEECCCCCEEecCC--CCceEEEEEccCCceeEe--ccCCCeEeeEEecCCceeEeeccCCc
Confidence 4566667764 567778899999999999988 778888999999986554 44433334678889999999999999
Q ss_pred EEEEeCCCCcEEEEEecC-C--------CCeeEE--eeCCCEEEEECCCceEEEEc
Q 023864 172 GFIYDQNNLNKLEEFTHQ-M--------KDGWGL--ATDGKVLFGSDGSSMLYQID 216 (276)
Q Consensus 172 v~V~D~~tlk~i~~~~~~-~--------~EGWGL--T~Dg~~L~vSDGS~~L~viD 216 (276)
+-|+|.++.+.+.++..+ . ++..-| .+||+.||.-+-++-|.++-
T Consensus 256 IkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 256 IKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred eEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 999999999998887643 1 112223 46899999977666665543
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.074 Score=51.80 Aligned_cols=112 Identities=10% Similarity=0.059 Sum_probs=67.3
Q ss_pred EEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCC--EEEEEeCCCCcEEEE
Q 023864 109 GLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK--TGFIYDQNNLNKLEE 185 (276)
Q Consensus 109 GL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~--~v~V~D~~tlk~i~~ 185 (276)
...|+|||+ |+.+...-|...|..+|++++++.+-..-+.....-....++.+|+.....++ .++.+|..+.+. ..
T Consensus 252 ~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~-~~ 330 (429)
T PRK01742 252 APAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA-SL 330 (429)
T ss_pred ceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe-EE
Confidence 578999985 55443333666788999998876443221222222233445567777665555 455556555433 22
Q ss_pred EecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEE
Q 023864 186 FTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVI 223 (276)
Q Consensus 186 ~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi 223 (276)
+... ...-.+++||+.|++..+ +.+..+|..+.+..
T Consensus 331 l~~~-~~~~~~SpDG~~ia~~~~-~~i~~~Dl~~g~~~ 366 (429)
T PRK01742 331 VGGR-GYSAQISADGKTLVMING-DNVVKQDLTSGSTE 366 (429)
T ss_pred ecCC-CCCccCCCCCCEEEEEcC-CCEEEEECCCCCeE
Confidence 2211 112236889999988755 67888999988754
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.14 Score=50.84 Aligned_cols=150 Identities=11% Similarity=0.009 Sum_probs=89.1
Q ss_pred CCEEEEEcCCCC---CCeEEEEeCCCCcEEEEeec---CCCceEEEEEEeCCEEEEEEee-----CCEEEEEeCCCCcEE
Q 023864 115 NDTLFESTGLYG---RSSVRRVALETGKVEAINQM---EGSYFGEGLTLLGEKLFQVTWL-----QKTGFIYDQNNLNKL 183 (276)
Q Consensus 115 dg~LyeStG~yg---~S~I~~iDl~tgkv~~~~~l---~~~~FgEGit~~g~~LyqlTwk-----~~~v~V~D~~tlk~i 183 (276)
+++||.-.|..+ -+.+.+||+++.+-....++ |....+-.++..+++||+.-=. -+.+.+||+.+.+-.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 478998777433 26799999999876554444 3334455778889999998532 256789998876543
Q ss_pred EEEec-----CCCCeeEEeeCCCEEEEE---CC--CceEEEEcCCCCcEEEEEEeeeCCEeeee-eeeeEEECCEEEEEe
Q 023864 184 EEFTH-----QMKDGWGLATDGKVLFGS---DG--SSMLYQIDPQTLKVIRKDIVRYKGREVRN-LNELEFIKGEVWANV 252 (276)
Q Consensus 184 ~~~~~-----~~~EGWGLT~Dg~~L~vS---DG--S~~L~viDp~t~~vi~~I~V~~~g~pv~~-lNELE~idG~lyANv 252 (276)
. ++. ....+-+++.-+..+|+- +| .+.|+++|+++.+-.+.-..+. .|..+ ---+..++++||+--
T Consensus 308 ~-~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~--~P~~R~~~~~~~~~~~iyv~G 384 (470)
T PLN02193 308 H-CSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGV--RPSERSVFASAAVGKHIVIFG 384 (470)
T ss_pred e-CCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCC--CCCCcceeEEEEECCEEEEEC
Confidence 2 111 113444554433345442 33 4789999999987654322111 11111 112335566666433
Q ss_pred C--------------CCCCeEEEEeCCCCc
Q 023864 253 W--------------QVWPCIPYAYLQAFG 268 (276)
Q Consensus 253 w--------------~s~d~I~vIDp~T~~ 268 (276)
. .. |.+.+.|++|.+
T Consensus 385 G~~~~~~~~~~~~~~~~-ndv~~~D~~t~~ 413 (470)
T PLN02193 385 GEIAMDPLAHVGPGQLT-DGTFALDTETLQ 413 (470)
T ss_pred CccCCccccccCcccee-ccEEEEEcCcCE
Confidence 3 23 568999999865
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.36 Score=49.35 Aligned_cols=161 Identities=11% Similarity=-0.025 Sum_probs=109.9
Q ss_pred cCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe-CCEEEEEEeeCCEEEEEeCCC
Q 023864 101 HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNN 179 (276)
Q Consensus 101 hd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~-g~~LyqlTwk~~~v~V~D~~t 179 (276)
|+..-+ .-++++ +|.+. +|. +.+.|+.||..+++.+...-.+..-=--++.+. ++.+++.--.+.++.|+|.++
T Consensus 206 ~~~~~~-~~~q~~-~~~~~--~~s-~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 206 TDDHVV-LCLQLH-DGFFK--SGS-DDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST 280 (537)
T ss_pred cCcchh-hhheee-cCeEE--ecC-CCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC
Confidence 433434 345565 46666 332 678899999999998877544432112255665 355555666799999999999
Q ss_pred CcEEEEEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEE-eeeCCEeeeeeeeeEEECCEEEEEeCCCCCe
Q 023864 180 LNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDI-VRYKGREVRNLNELEFIKGEVWANVWQVWPC 258 (276)
Q Consensus 180 lk~i~~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~-V~~~g~pv~~lNELE~idG~lyANvw~s~d~ 258 (276)
.+-+..+.....-+--++-++..+...-..++|.++|.++.+.++.+. .+ ..+|++.+.++++++.. ++ ..
T Consensus 281 g~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~------~~V~~v~~~~~~lvsgs-~d-~~ 352 (537)
T KOG0274|consen 281 GECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHT------GPVNCVQLDEPLLVSGS-YD-GT 352 (537)
T ss_pred CcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEecccc------ccEEEEEecCCEEEEEe-cC-ce
Confidence 999999984312222345444444443468999999999999988877 33 26778888888888777 56 78
Q ss_pred EEEEeCCCCcEEEEEEe
Q 023864 259 IPYAYLQAFGSSLVYVT 275 (276)
Q Consensus 259 I~vIDp~T~~v~l~~~~ 275 (276)
|.|.|+.+++ -|.+++
T Consensus 353 v~VW~~~~~~-cl~sl~ 368 (537)
T KOG0274|consen 353 VKVWDPRTGK-CLKSLS 368 (537)
T ss_pred EEEEEhhhce-eeeeec
Confidence 9999999844 445543
|
|
| >smart00284 OLF Olfactomedin-like domains | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.16 Score=47.35 Aligned_cols=145 Identities=12% Similarity=0.197 Sum_probs=90.8
Q ss_pred EEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceE------------EEEEEeCCEEEEE---EeeCCEE-
Q 023864 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFG------------EGLTLLGEKLFQV---TWLQKTG- 172 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~Fg------------EGit~~g~~Lyql---Twk~~~v- 172 (276)
|..+. +|.||.- .++...|.+||+.++++..+..||..-|. .-++++.+-||++ ...++.+
T Consensus 78 G~VVY-ngslYY~--~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~iv 154 (255)
T smart00284 78 GVVVY-NGSLYFN--KFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIV 154 (255)
T ss_pred cEEEE-CceEEEE--ecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEE
Confidence 55666 4888875 44788999999999999888878743222 4678888888888 3333333
Q ss_pred -EEEeCCCCcEEEEEecC-----CCCeeEEeeCCCEEEEECC----Cce-EEEEcCCCCcEEEEEEeeeCCEeeeeeeee
Q 023864 173 -FIYDQNNLNKLEEFTHQ-----MKDGWGLATDGKVLFGSDG----SSM-LYQIDPQTLKVIRKDIVRYKGREVRNLNEL 241 (276)
Q Consensus 173 -~V~D~~tlk~i~~~~~~-----~~EGWGLT~Dg~~L~vSDG----S~~-L~viDp~t~~vi~~I~V~~~g~pv~~lNEL 241 (276)
..+|+.||++++++.++ .++..=+| ..||+.+. ..+ -+..|+.|.+... +.+.-.. +...+.-|
T Consensus 155 vSkLnp~tL~ve~tW~T~~~k~sa~naFmvC---GvLY~~~s~~~~~~~I~yayDt~t~~~~~-~~i~f~n-~y~~~s~l 229 (255)
T smart00284 155 ISKLNPATLTIENTWITTYNKRSASNAFMIC---GILYVTRSLGSKGEKVFYAYDTNTGKEGH-LDIPFEN-MYEYISML 229 (255)
T ss_pred EEeeCcccceEEEEEEcCCCcccccccEEEe---eEEEEEccCCCCCcEEEEEEECCCCccce-eeeeecc-ccccceec
Confidence 46999999999998754 22222245 47888762 333 4778999876543 3333211 12223223
Q ss_pred EEE--CCEEEEEeCCCCCeEEEEeC
Q 023864 242 EFI--KGEVWANVWQVWPCIPYAYL 264 (276)
Q Consensus 242 E~i--dG~lyANvw~s~d~I~vIDp 264 (276)
.|- |.+||| |.. ..++.-|.
T Consensus 230 ~YNP~d~~LY~--wdn-g~~l~Y~v 251 (255)
T smart00284 230 DYNPNDRKLYA--WNN-GHLVHYDI 251 (255)
T ss_pred eeCCCCCeEEE--EeC-CeEEEEEE
Confidence 343 667885 545 55555443
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0039 Score=62.18 Aligned_cols=136 Identities=21% Similarity=0.175 Sum_probs=93.4
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe-CCEEEEEEeeCC
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQK 170 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~-g~~LyqlTwk~~ 170 (276)
+-+||++|.|...+. .-+.|-++|+=|+|+- +++++++|+...+-.+..+.-+...=---++++ ++..+.+--.++
T Consensus 331 s~kvvqeYd~hLg~i-~~i~F~~~g~rFissS--Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN 407 (503)
T KOG0282|consen 331 SGKVVQEYDRHLGAI-LDITFVDEGRRFISSS--DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDN 407 (503)
T ss_pred chHHHHHHHhhhhhe-eeeEEccCCceEeeec--cCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCc
Confidence 346788888877776 7778888888888877 888999999988755443322221111125554 356666666677
Q ss_pred EEEEEeCCC---CcEEEEEecCCCCeeE----EeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeee
Q 023864 171 TGFIYDQNN---LNKLEEFTHQMKDGWG----LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY 230 (276)
Q Consensus 171 ~v~V~D~~t---lk~i~~~~~~~~EGWG----LT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~ 230 (276)
.+.+|.+.. +.+.+.|.=-+-.|++ +++||.+|.-.|+..+++++|-+|-+++++++..+
T Consensus 408 ~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~ 474 (503)
T KOG0282|consen 408 YIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHD 474 (503)
T ss_pred eEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCC
Confidence 777776432 2223334311234444 68999999999999999999999999999888874
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.31 Score=46.38 Aligned_cols=163 Identities=10% Similarity=0.018 Sum_probs=101.1
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe-CCEEEEEEeeCCEE
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQKTG 172 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~-g~~LyqlTwk~~~v 172 (276)
.+++.|.- ..-|.+++..++||....|++ -+-.++.||+++|+..++..-... ---++++. +++-.+---+++++
T Consensus 54 ~~~r~~~G-HsH~v~dv~~s~dg~~alS~s--wD~~lrlWDl~~g~~t~~f~GH~~-dVlsva~s~dn~qivSGSrDkTi 129 (315)
T KOG0279|consen 54 VPVRRLTG-HSHFVSDVVLSSDGNFALSAS--WDGTLRLWDLATGESTRRFVGHTK-DVLSVAFSTDNRQIVSGSRDKTI 129 (315)
T ss_pred ceeeeeec-cceEecceEEccCCceEEecc--ccceEEEEEecCCcEEEEEEecCC-ceEEEEecCCCceeecCCCccee
Confidence 35555553 578999999999999988888 788999999999976555433322 12345553 45666777789999
Q ss_pred EEEeCCCCcEEEEEecCCCCeeE----EeeCC-CEEEEECC-CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-C
Q 023864 173 FIYDQNNLNKLEEFTHQMKDGWG----LATDG-KVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-K 245 (276)
Q Consensus 173 ~V~D~~tlk~i~~~~~~~~EGWG----LT~Dg-~~L~vSDG-S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-d 245 (276)
-+||...--+...-. .+.-+|- +.|.. .-.++|-| +..|-++|.+++++.....-. -+++|-+++. |
T Consensus 130 klwnt~g~ck~t~~~-~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh-----~~~v~t~~vSpD 203 (315)
T KOG0279|consen 130 KLWNTLGVCKYTIHE-DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGH-----SGYVNTVTVSPD 203 (315)
T ss_pred eeeeecccEEEEEec-CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccc-----cccEEEEEECCC
Confidence 999865544432222 1124565 44665 45666776 778999999999875432211 1244444433 4
Q ss_pred CEEEEEeCCCCCeEEEEeCCCC
Q 023864 246 GEVWANVWQVWPCIPYAYLQAF 267 (276)
Q Consensus 246 G~lyANvw~s~d~I~vIDp~T~ 267 (276)
|.+.|.=..+ ..+..-|.+.+
T Consensus 204 GslcasGgkd-g~~~LwdL~~~ 224 (315)
T KOG0279|consen 204 GSLCASGGKD-GEAMLWDLNEG 224 (315)
T ss_pred CCEEecCCCC-ceEEEEEccCC
Confidence 4444443333 44444454443
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.15 Score=53.74 Aligned_cols=107 Identities=14% Similarity=0.162 Sum_probs=83.5
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe-CCEEEEEEeeCCEEEEEeCCCCcE
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNLNK 182 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~-g~~LyqlTwk~~~v~V~D~~tlk~ 182 (276)
..=+.+|.++.|..+.. +| +..+|..|+.+|++-++++.-+ +.-+..+. ||+..++-.++|.+-+||.++-..
T Consensus 373 R~dVRsl~vS~d~~~~~-Sg--a~~SikiWn~~t~kciRTi~~~---y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l 446 (888)
T KOG0306|consen 373 RSDVRSLCVSSDSILLA-SG--AGESIKIWNRDTLKCIRTITCG---YILASKFVPGDRYIVLGTKNGELQVFDLASASL 446 (888)
T ss_pred hhheeEEEeecCceeee-ec--CCCcEEEEEccCcceeEEeccc---cEEEEEecCCCceEEEeccCCceEEEEeehhhh
Confidence 34457999997665554 44 4578999999999999987655 45555554 688888999999999999999999
Q ss_pred EEEEecCCCCeeE--EeeCCCEEEEECCCceEEEEc
Q 023864 183 LEEFTHQMKDGWG--LATDGKVLFGSDGSSMLYQID 216 (276)
Q Consensus 183 i~~~~~~~~EGWG--LT~Dg~~L~vSDGS~~L~viD 216 (276)
+.+++.--++=|- ++||++.++..-++.+|-|+|
T Consensus 447 ~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWd 482 (888)
T KOG0306|consen 447 VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWD 482 (888)
T ss_pred hhhhhccccceeeeeecCCCCceEEecCCcEEEEEe
Confidence 9988732245566 678999888877889999998
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.17 Score=52.49 Aligned_cols=127 Identities=13% Similarity=0.078 Sum_probs=84.1
Q ss_pred EecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEee-cCCCceEEEEEEeCCEEEEEEeeCCEEEEEeC
Q 023864 99 FPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQ-MEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQ 177 (276)
Q Consensus 99 ~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~-l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~ 177 (276)
++.+...-++||+|.+.++|| |.| .+.+|..||+.+++.+..+. .+...+...+...++.+ .+--.++.++.++.
T Consensus 64 i~g~~drsIE~L~W~e~~RLF-S~g--~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l-~IgcddGvl~~~s~ 139 (691)
T KOG2048|consen 64 IHGPEDRSIESLAWAEGGRLF-SSG--LSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTIL-AIGCDDGVLYDFSI 139 (691)
T ss_pred EecCCCCceeeEEEccCCeEE-eec--CCceEEEEecccCceeEEecCCCcceeEEEeCCccceE-EeecCCceEEEEec
Confidence 344567778999999778999 566 67889999999999877663 44456655555444443 33345667777777
Q ss_pred CCCcEEEEEecCCCCeeEEe----eCCCEEEEECCCceEEEEcCCCCcEEEEEEee
Q 023864 178 NNLNKLEEFTHQMKDGWGLA----TDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVR 229 (276)
Q Consensus 178 ~tlk~i~~~~~~~~EGWGLT----~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~ 229 (276)
.+.+..-.......+|=-|+ ++|..++..--+..|.++|..+.+....+..+
T Consensus 140 ~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~ 195 (691)
T KOG2048|consen 140 GPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQ 195 (691)
T ss_pred CCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeec
Confidence 77766655444322354543 45555665333446899999988887755544
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.23 Score=46.28 Aligned_cols=99 Identities=15% Similarity=0.175 Sum_probs=61.2
Q ss_pred EEEEecCCEEEEEcCCCC---CCeEEEEeCCCCcEEEEeecCC-CceEEEEEEeCCEEEEEEeeC----CEEEEEeCCCC
Q 023864 109 GLLYAENDTLFESTGLYG---RSSVRRVALETGKVEAINQMEG-SYFGEGLTLLGEKLFQVTWLQ----KTGFIYDQNNL 180 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg---~S~I~~iDl~tgkv~~~~~l~~-~~FgEGit~~g~~LyqlTwk~----~~v~V~D~~tl 180 (276)
+.... +++||+..|..+ .+.+.+||+.+.+-....+++. ...+-.++..+++||++-=.+ ..+.+||+.+.
T Consensus 118 ~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 118 SACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred eEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 44555 589999877432 3679999999987655445653 334445677899999985332 34689998875
Q ss_pred cE--EEEEe---cC--CCCeeEEeeCCCEEEEECC
Q 023864 181 NK--LEEFT---HQ--MKDGWGLATDGKVLFGSDG 208 (276)
Q Consensus 181 k~--i~~~~---~~--~~EGWGLT~Dg~~L~vSDG 208 (276)
+- +...+ .+ ....-+++..+..||+-=|
T Consensus 197 ~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG 231 (323)
T TIGR03548 197 QWQKVADPTTDSEPISLLGAASIKINESLLLCIGG 231 (323)
T ss_pred eeEECCCCCCCCCceeccceeEEEECCCEEEEECC
Confidence 53 33221 11 0123345666677777544
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0091 Score=59.65 Aligned_cols=162 Identities=13% Similarity=0.075 Sum_probs=109.2
Q ss_pred eEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEE
Q 023864 93 IQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTG 172 (276)
Q Consensus 93 ~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v 172 (276)
.+.|.+|-+- ..=+.-+.|+++|+=|.|+| -+-.|..||.+||+++.+..++.-++..-.-.+|..+|.+--.++++
T Consensus 248 ~~~lrtf~gH-~k~Vrd~~~s~~g~~fLS~s--fD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki 324 (503)
T KOG0282|consen 248 RRCLRTFKGH-RKPVRDASFNNCGTSFLSAS--FDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKI 324 (503)
T ss_pred cceehhhhcc-hhhhhhhhccccCCeeeeee--cceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcE
Confidence 5667777652 33336778898898888888 67789999999999999999999888887778888999999999999
Q ss_pred EEEeCCCCcEEEEEecCCCCee---EEeeCCCEEEEECCCceEEEEcCCCCcEEEEEE-eeeCCEeeeeeeeeEEECCEE
Q 023864 173 FIYDQNNLNKLEEFTHQMKDGW---GLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDI-VRYKGREVRNLNELEFIKGEV 248 (276)
Q Consensus 173 ~V~D~~tlk~i~~~~~~~~EGW---GLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~-V~~~g~pv~~lNELE~idG~l 248 (276)
..||..+.+++.++.... .+| -+-++|++.+-|--...+.+++-...-.++.|. +.....|. ++ ..-+|..
T Consensus 325 ~~wDiRs~kvvqeYd~hL-g~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~--~~--~~P~~~~ 399 (503)
T KOG0282|consen 325 RQWDIRSGKVVQEYDRHL-GAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPC--LT--LHPNGKW 399 (503)
T ss_pred EEEeccchHHHHHHHhhh-hheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcc--ee--cCCCCCe
Confidence 999999999988876431 122 233567776664444567777755443333321 11111111 10 0225556
Q ss_pred EEEeCCCCCeEEEEe
Q 023864 249 WANVWQVWPCIPYAY 263 (276)
Q Consensus 249 yANvw~s~d~I~vID 263 (276)
++.--+. |+|++..
T Consensus 400 ~~aQs~d-N~i~ifs 413 (503)
T KOG0282|consen 400 FAAQSMD-NYIAIFS 413 (503)
T ss_pred ehhhccC-ceEEEEe
Confidence 6655566 6666544
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.066 Score=56.84 Aligned_cols=113 Identities=12% Similarity=-0.014 Sum_probs=74.8
Q ss_pred EeCCEEEEEEeeCCEEEEEeCCCCcEEEEEecCCCC----------eeEE----------------eeCCCEEEEECCCc
Q 023864 157 LLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKD----------GWGL----------------ATDGKVLFGSDGSS 210 (276)
Q Consensus 157 ~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~E----------GWGL----------------T~Dg~~L~vSDGS~ 210 (276)
+.|++||+.|. .+.++.+|++|.|++-++....+. |.++ +..++++|+...+.
T Consensus 192 vvgg~lYv~t~-~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg 270 (764)
T TIGR03074 192 KVGDTLYLCTP-HNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDA 270 (764)
T ss_pred EECCEEEEECC-CCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCC
Confidence 46899999997 468999999999999998754211 1111 11345888877788
Q ss_pred eEEEEcCCCCcEEEEEEe------ee--CCEe---eeeeeeeEEECCEEEEEeCCC--------CCeEEEEeCCCCcEE
Q 023864 211 MLYQIDPQTLKVIRKDIV------RY--KGRE---VRNLNELEFIKGEVWANVWQV--------WPCIPYAYLQAFGSS 270 (276)
Q Consensus 211 ~L~viDp~t~~vi~~I~V------~~--~g~p---v~~lNELE~idG~lyANvw~s--------~d~I~vIDp~T~~v~ 270 (276)
+|+-+|++|+++.-+... .. ...+ +....--.+++|.|++..+.. ...|..+|.+||+..
T Consensus 271 ~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 271 RLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred eEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 999999999999854321 10 0000 000000125588999876533 156999999998865
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.04 Score=52.66 Aligned_cols=150 Identities=19% Similarity=0.266 Sum_probs=96.9
Q ss_pred EEEEEEecCCCCCceEEEEecC-CE-EEEEcCCCCCCeEEEEeCCCCcEEEEee--cCCCceEEEEEEeCCEEEEEEeeC
Q 023864 94 QVVNEFPHDPRAFTQGLLYAEN-DT-LFESTGLYGRSSVRRVALETGKVEAINQ--MEGSYFGEGLTLLGEKLFQVTWLQ 169 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~d-g~-LyeStG~yg~S~I~~iDl~tgkv~~~~~--l~~~~FgEGit~~g~~LyqlTwk~ 169 (276)
|++..... .+.-.|++++|- .+ +... +.=.-.-.++|+.+++...... -+.++||-|+=-.++++.-+|..+
T Consensus 59 k~v~~~~l--paR~Hgi~~~p~~~ravafA--RrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEnd 134 (366)
T COG3490 59 KIVFATAL--PARGHGIAFHPALPRAVAFA--RRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATEND 134 (366)
T ss_pred ceeeeeec--ccccCCeecCCCCcceEEEE--ecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCC
Confidence 45555544 233348888775 22 3321 2223455678998887655543 345899999877666666666644
Q ss_pred -----CEEEEEeC-CCCcEEEEEecCCCCeeE-----EeeCCCEEEEECC---Cc---------------eEEEEcCCCC
Q 023864 170 -----KTGFIYDQ-NNLNKLEEFTHQMKDGWG-----LATDGKVLFGSDG---SS---------------MLYQIDPQTL 220 (276)
Q Consensus 170 -----~~v~V~D~-~tlk~i~~~~~~~~EGWG-----LT~Dg~~L~vSDG---S~---------------~L~viDp~t~ 220 (276)
+.+=|||. +-++.+++|+. .|.| |..||..|.+.|| +. .|..+|..|+
T Consensus 135 fd~~rGViGvYd~r~~fqrvgE~~t---~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG 211 (366)
T COG3490 135 FDPNRGVIGVYDAREGFQRVGEFST---HGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATG 211 (366)
T ss_pred CCCCCceEEEEecccccceeccccc---CCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEecccc
Confidence 56677996 46778888873 4444 7789999999997 33 6788899999
Q ss_pred cEEEEEEee--eCCEeeeeeeeeEEE-CCEEEEEeC
Q 023864 221 KVIRKDIVR--YKGREVRNLNELEFI-KGEVWANVW 253 (276)
Q Consensus 221 ~vi~~I~V~--~~g~pv~~lNELE~i-dG~lyANvw 253 (276)
+++.++..- ..-..+.++ ... ||.||..|=
T Consensus 212 ~liekh~Lp~~l~~lSiRHl---d~g~dgtvwfgcQ 244 (366)
T COG3490 212 NLIEKHTLPASLRQLSIRHL---DIGRDGTVWFGCQ 244 (366)
T ss_pred chhhhccCchhhhhcceeee---eeCCCCcEEEEEE
Confidence 988877765 222233333 122 678887773
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.34 Score=46.81 Aligned_cols=126 Identities=14% Similarity=0.160 Sum_probs=91.0
Q ss_pred eeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEee
Q 023864 91 YTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWL 168 (276)
Q Consensus 91 ~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk 168 (276)
.+.+.+.++..-..+ +-+|.++|.|+|=.|.| |+-.++.||+-+|+.-...+|... ++-+-+. |++.++.-
T Consensus 115 ~~W~~~~slK~H~~~-Vt~lsiHPS~KLALsVg--~D~~lr~WNLV~Gr~a~v~~L~~~--at~v~w~~~Gd~F~v~~-- 187 (362)
T KOG0294|consen 115 GSWELLKSLKAHKGQ-VTDLSIHPSGKLALSVG--GDQVLRTWNLVRGRVAFVLNLKNK--ATLVSWSPQGDHFVVSG-- 187 (362)
T ss_pred CCeEEeeeecccccc-cceeEecCCCceEEEEc--CCceeeeehhhcCccceeeccCCc--ceeeEEcCCCCEEEEEe--
Confidence 355788888432455 79999999999998988 999999999999998777677654 4445554 46666655
Q ss_pred CCEEEEEeCCCCcEEEEEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEE
Q 023864 169 QKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVI 223 (276)
Q Consensus 169 ~~~v~V~D~~tlk~i~~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi 223 (276)
.+++-+|-.++-++.+++..+...-....-++..|++.--...|.+.|..+....
T Consensus 188 ~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~ 242 (362)
T KOG0294|consen 188 RNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPL 242 (362)
T ss_pred ccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccc
Confidence 6788888888888888877662233333446778887544578889998875443
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.81 Score=43.79 Aligned_cols=160 Identities=18% Similarity=0.110 Sum_probs=97.2
Q ss_pred ceEEEEecCCE-EEEEcCCCCC-CeEEEEeCCCC-----cEEEEe-ecCCCceEEEEEEeCCEEEEEEee---CCEEEEE
Q 023864 107 TQGLLYAENDT-LFESTGLYGR-SSVRRVALETG-----KVEAIN-QMEGSYFGEGLTLLGEKLFQVTWL---QKTGFIY 175 (276)
Q Consensus 107 TQGL~~~~dg~-LyeStG~yg~-S~I~~iDl~tg-----kv~~~~-~l~~~~FgEGit~~g~~LyqlTwk---~~~v~V~ 175 (276)
.-++..++|++ |+...+.-.. +.|..+|+.++ +...-. ..+... -.+...++++|++|.+ .++++.+
T Consensus 229 ~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~--~~v~~~~~~~yi~Tn~~a~~~~l~~~ 306 (414)
T PF02897_consen 229 FVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVE--YYVDHHGDRLYILTNDDAPNGRLVAV 306 (414)
T ss_dssp EEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-E--EEEEEETTEEEEEE-TT-TT-EEEEE
T ss_pred EEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceE--EEEEccCCEEEEeeCCCCCCcEEEEe
Confidence 46788888875 5544443344 89999999986 332222 233322 1244459999999964 4789999
Q ss_pred eCCCCcE---EEEEecCCCCee---EEeeCCCEEEE---ECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECC
Q 023864 176 DQNNLNK---LEEFTHQMKDGW---GLATDGKVLFG---SDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKG 246 (276)
Q Consensus 176 D~~tlk~---i~~~~~~~~EGW---GLT~Dg~~L~v---SDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG 246 (276)
|.++... ...+.-+ .++. ++...+++|++ .||..+|.++|+...+....+.....|. +..+| .++...
T Consensus 307 ~l~~~~~~~~~~~l~~~-~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~-v~~~~-~~~~~~ 383 (414)
T PF02897_consen 307 DLADPSPAEWWTVLIPE-DEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGS-VSGVS-GDFDSD 383 (414)
T ss_dssp ETTSTSGGGEEEEEE---SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSE-EEEEE-S-TT-S
T ss_pred cccccccccceeEEcCC-CCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceE-EeccC-CCCCCC
Confidence 9988873 2233221 2321 23445777766 4589999999999666777777765453 22222 123344
Q ss_pred EE--EEEeCCCCCeEEEEeCCCCcEEE
Q 023864 247 EV--WANVWQVWPCIPYAYLQAFGSSL 271 (276)
Q Consensus 247 ~l--yANvw~s~d~I~vIDp~T~~v~l 271 (276)
.+ ..+-|.+-..|...|++|++..+
T Consensus 384 ~~~~~~ss~~~P~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 384 ELRFSYSSFTTPPTVYRYDLATGELTL 410 (414)
T ss_dssp EEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred EEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence 44 47777775689999999998765
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.18 Score=47.70 Aligned_cols=113 Identities=13% Similarity=0.146 Sum_probs=75.6
Q ss_pred EEEEEE-eCCEEEEEEeeC------CEEEEEeCCCCcEEEEEecC-----------------CCCeeEEeeCCCEEEEEC
Q 023864 152 GEGLTL-LGEKLFQVTWLQ------KTGFIYDQNNLNKLEEFTHQ-----------------MKDGWGLATDGKVLFGSD 207 (276)
Q Consensus 152 gEGit~-~g~~LyqlTwk~------~~v~V~D~~tlk~i~~~~~~-----------------~~EGWGLT~Dg~~L~vSD 207 (276)
.|||++ .++.+|+..... ..+..||++ .+.+.+++.| .-||.++++||+.||+.-
T Consensus 87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 799999 679999999999 999999987 7777766422 237888999999888743
Q ss_pred -CC---------------ceEEEEcCCC-CcEEEEEEeeeCC----EeeeeeeeeEEEC-CEEEEE-------eCCCCCe
Q 023864 208 -GS---------------SMLYQIDPQT-LKVIRKDIVRYKG----REVRNLNELEFIK-GEVWAN-------VWQVWPC 258 (276)
Q Consensus 208 -GS---------------~~L~viDp~t-~~vi~~I~V~~~g----~pv~~lNELE~id-G~lyAN-------vw~s~d~ 258 (276)
+. -+|+.+|+.+ .+..+......+. .....+-|+.+.+ |++++= .-.. -.
T Consensus 166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~-~r 244 (326)
T PF13449_consen 166 ESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNY-KR 244 (326)
T ss_pred CccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccce-EE
Confidence 21 3688889887 4444444443321 0233566777664 445431 1223 57
Q ss_pred EEEEeCCC
Q 023864 259 IPYAYLQA 266 (276)
Q Consensus 259 I~vIDp~T 266 (276)
|..||...
T Consensus 245 i~~v~l~~ 252 (326)
T PF13449_consen 245 IYRVDLSD 252 (326)
T ss_pred EEEEEccc
Confidence 88888654
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.56 Score=44.94 Aligned_cols=157 Identities=16% Similarity=0.185 Sum_probs=93.4
Q ss_pred CCceEEEEecC-CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEE-eeCCEEEE--EeCCCC
Q 023864 105 AFTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVT-WLQKTGFI--YDQNNL 180 (276)
Q Consensus 105 aFTQGL~~~~d-g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlT-wk~~~v~V--~D~~tl 180 (276)
.=+.+|+|+|+ .+||..++ ....|..++. +|+++++++|+.--=+|+|+..++-.|+++ .+.+.+++ +|++|.
T Consensus 86 ~nvS~LTynp~~rtLFav~n--~p~~iVElt~-~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTN--KPAAIVELTK-EGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred ccccceeeCCCcceEEEecC--CCceEEEEec-CCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 33789999998 46887766 7788888887 599999999986334799999986666655 56677666 455533
Q ss_pred c-EEE--EEecC-------CCCeeEEeeCCCEEEEECCCc--eEEEEc--CCCCcEEEE-EEeeeCCEeeeeeeeeEEE-
Q 023864 181 N-KLE--EFTHQ-------MKDGWGLATDGKVLFGSDGSS--MLYQID--PQTLKVIRK-DIVRYKGREVRNLNELEFI- 244 (276)
Q Consensus 181 k-~i~--~~~~~-------~~EGWGLT~Dg~~L~vSDGS~--~L~viD--p~t~~vi~~-I~V~~~g~pv~~lNELE~i- 244 (276)
. .++ .++.+ .=||.+-.+.++.||++=--+ .|+.++ |..+.+-.. ....+..--+..+--|||.
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~ 242 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNA 242 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecC
Confidence 2 112 33322 237777777788888876433 444443 222211100 0111111223344445555
Q ss_pred -CCEEEEEeCCCCCeEEEEeCC
Q 023864 245 -KGEVWANVWQVWPCIPYAYLQ 265 (276)
Q Consensus 245 -dG~lyANvw~s~d~I~vIDp~ 265 (276)
+|.++|=--.+ -.++.+|..
T Consensus 243 ~~~~LLVLS~ES-r~l~Evd~~ 263 (316)
T COG3204 243 ITNSLLVLSDES-RRLLEVDLS 263 (316)
T ss_pred CCCcEEEEecCC-ceEEEEecC
Confidence 55666655555 666666654
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.18 Score=47.68 Aligned_cols=151 Identities=14% Similarity=0.102 Sum_probs=102.6
Q ss_pred EEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEEEEEeeCCEEEEEeCCCCcEEEEEe
Q 023864 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNKLEEFT 187 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~LyqlTwk~~~v~V~D~~tlk~i~~~~ 187 (276)
-..++|+|.-+.-.+ .++.|..+|..+.++....++. .|---++..+ +.+|.||...|.+-|..-..||++.++.
T Consensus 111 ~i~wsp~g~~~~~~~--kdD~it~id~r~~~~~~~~~~~--~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~ 186 (313)
T KOG1407|consen 111 NITWSPDGEYIAVGN--KDDRITFIDARTYKIVNEEQFK--FEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIK 186 (313)
T ss_pred EEEEcCCCCEEEEec--CcccEEEEEecccceeehhccc--ceeeeeeecCCCCEEEEecCCceEEEEeccccccccccc
Confidence 356788876443334 7899999999999887765443 4444566654 7999999999999999999999999996
Q ss_pred cCCCCee--EEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEE-ECCEEEEEeCCCCCeEEEEeC
Q 023864 188 HQMKDGW--GLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEF-IKGEVWANVWQVWPCIPYAYL 264 (276)
Q Consensus 188 ~~~~EGW--GLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~-idG~lyANvw~s~d~I~vIDp 264 (276)
--..+.+ .+.|||+++-+.-.++.+..+|++.+--++.|.=-+. ||.-+ -+ .||+..|.--.+ -.|=+-+.
T Consensus 187 AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldw--pVRTl---SFS~dg~~lASaSED-h~IDIA~v 260 (313)
T KOG1407|consen 187 AHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDW--PVRTL---SFSHDGRMLASASED-HFIDIAEV 260 (313)
T ss_pred cCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccC--ceEEE---EeccCcceeeccCcc-ceEEeEec
Confidence 3212333 3789999998866678899999998765555543332 22221 12 256655555333 45555566
Q ss_pred CCCcE
Q 023864 265 QAFGS 269 (276)
Q Consensus 265 ~T~~v 269 (276)
+||..
T Consensus 261 etGd~ 265 (313)
T KOG1407|consen 261 ETGDR 265 (313)
T ss_pred ccCCe
Confidence 66554
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.061 Score=53.60 Aligned_cols=108 Identities=13% Similarity=0.120 Sum_probs=75.4
Q ss_pred eEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCE-EEEEeCCCCcEEEEE
Q 023864 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKT-GFIYDQNNLNKLEEF 186 (276)
Q Consensus 108 QGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~-v~V~D~~tlk~i~~~ 186 (276)
--++|+|||.||- ||. -++.|.+||+..+....+.+--..+. -.|.+..+-.|.+|--++. |+.||...++..++|
T Consensus 351 ts~~fHpDgLifg-tgt-~d~~vkiwdlks~~~~a~Fpght~~v-k~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~ 427 (506)
T KOG0289|consen 351 TSAAFHPDGLIFG-TGT-PDGVVKIWDLKSQTNVAKFPGHTGPV-KAISFSENGYWLATAADDGSVKLWDLRKLKNFKTI 427 (506)
T ss_pred EEeeEcCCceEEe-ccC-CCceEEEEEcCCccccccCCCCCCce-eEEEeccCceEEEEEecCCeEEEEEehhhccccee
Confidence 3568899998884 775 78899999999987555433323333 2466666777888777666 999999999999999
Q ss_pred ecCCCCeeE---Ee--eCCCEEEEECCCceEEEEcCCCC
Q 023864 187 THQMKDGWG---LA--TDGKVLFGSDGSSMLYQIDPQTL 220 (276)
Q Consensus 187 ~~~~~EGWG---LT--~Dg~~L~vSDGS~~L~viDp~t~ 220 (276)
+.+ |+.+ ++ .-|++|.++-.+=+||..+-.+-
T Consensus 428 ~l~--~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k 464 (506)
T KOG0289|consen 428 QLD--EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTK 464 (506)
T ss_pred ecc--ccccceeEEEcCCCCeEEeecceeEEEEEecccc
Confidence 876 4433 33 44778877722346777775543
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.43 Score=46.76 Aligned_cols=129 Identities=12% Similarity=0.099 Sum_probs=90.0
Q ss_pred EEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe----CCEEEEEEeeCC
Q 023864 95 VVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL----GEKLFQVTWLQK 170 (276)
Q Consensus 95 Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~----g~~LyqlTwk~~ 170 (276)
..-+.+--...- --+.|+-||+|+.+.+ =...|.+++..+|....++. +=+++|.+. ..+++.+--.++
T Consensus 98 ~~~eltgHKDSV-t~~~FshdgtlLATGd--msG~v~v~~~stg~~~~~~~----~e~~dieWl~WHp~a~illAG~~DG 170 (399)
T KOG0296|consen 98 FAGELTGHKDSV-TCCSFSHDGTLLATGD--MSGKVLVFKVSTGGEQWKLD----QEVEDIEWLKWHPRAHILLAGSTDG 170 (399)
T ss_pred ceeEecCCCCce-EEEEEccCceEEEecC--CCccEEEEEcccCceEEEee----cccCceEEEEecccccEEEeecCCC
Confidence 444444224444 3466666889888666 36678888999998766653 113445543 267777778899
Q ss_pred EEEEEeCCCCcEEEEEecC-CCCeeE-EeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeee
Q 023864 171 TGFIYDQNNLNKLEEFTHQ-MKDGWG-LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY 230 (276)
Q Consensus 171 ~v~V~D~~tlk~i~~~~~~-~~EGWG-LT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~ 230 (276)
.++.|...+....+.++=. .+--.| +.||||++..-.-+..|.++||+|++.+.++.-.+
T Consensus 171 svWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e 232 (399)
T KOG0296|consen 171 SVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAE 232 (399)
T ss_pred cEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccc
Confidence 9999998887777777522 122234 89999999887668899999999999988877544
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.11 Score=51.52 Aligned_cols=131 Identities=23% Similarity=0.242 Sum_probs=85.7
Q ss_pred CC-CeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCC--EEEEEeCCCCcEEEEEecCCCCee----EEee
Q 023864 126 GR-SSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK--TGFIYDQNNLNKLEEFTHQMKDGW----GLAT 198 (276)
Q Consensus 126 g~-S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~--~v~V~D~~tlk~i~~~~~~~~EGW----GLT~ 198 (276)
+. +.+.++|+++|+-......+..-+.-....+|.+|....-+++ .++++|..+....+ +.. .+|+ .++|
T Consensus 215 ~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~--~~gi~~~Ps~sp 291 (425)
T COG0823 215 GGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTN--GFGINTSPSWSP 291 (425)
T ss_pred CCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-ccc--CCccccCccCCC
Confidence 44 7899999999987666666665555566777788877777665 57888988777333 432 2333 3789
Q ss_pred CCCEE-EEEC--CCceEEEEcCCCCcEEEEEEeeeCC--EeeeeeeeeEEECCE--EEEEeCCCCC--eEEEEeCCCCc
Q 023864 199 DGKVL-FGSD--GSSMLYQIDPQTLKVIRKDIVRYKG--REVRNLNELEFIKGE--VWANVWQVWP--CIPYAYLQAFG 268 (276)
Q Consensus 199 Dg~~L-~vSD--GS~~L~viDp~t~~vi~~I~V~~~g--~pv~~lNELE~idG~--lyANvw~s~d--~I~vIDp~T~~ 268 (276)
||+++ |+|| |..+|+.+|++..++ .++.-...+ .|.. -.||. ++.+. .. + .|.+-|++++.
T Consensus 292 dG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~------SpdG~~i~~~~~-~~-g~~~i~~~~~~~~~ 361 (425)
T COG0823 292 DGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVW------SPDGDKIVFESS-SG-GQWDIDKNDLASGG 361 (425)
T ss_pred CCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccC------CCCCCEEEEEec-cC-CceeeEEeccCCCC
Confidence 99876 7799 788999999998877 344333222 2322 23554 45551 22 3 36666776655
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.083 Score=49.75 Aligned_cols=139 Identities=17% Similarity=0.156 Sum_probs=97.7
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe-CCEEEEEEeeCC
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQK 170 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~-g~~LyqlTwk~~ 170 (276)
+-++|+++-.... +.-|++++||+++.. . ..++|..||..+-++++..++|-+.= ...+. +..+|++--.+.
T Consensus 174 Tgt~v~sL~~~s~--VtSlEvs~dG~ilTi-a--~gssV~Fwdaksf~~lKs~k~P~nV~--SASL~P~k~~fVaGged~ 246 (334)
T KOG0278|consen 174 TGTEVQSLEFNSP--VTSLEVSQDGRILTI-A--YGSSVKFWDAKSFGLLKSYKMPCNVE--SASLHPKKEFFVAGGEDF 246 (334)
T ss_pred cCcEEEEEecCCC--CcceeeccCCCEEEE-e--cCceeEEeccccccceeeccCccccc--cccccCCCceEEecCcce
Confidence 5567887754222 347899999986642 2 33789999999999999999997743 33444 358999999999
Q ss_pred EEEEEeCCCCcEEEEEecC--CC-CeeEEeeCCCEEEE--E-CCCceEEEEcCCCCc-EEEEEEeeeCCEeeeee
Q 023864 171 TGFIYDQNNLNKLEEFTHQ--MK-DGWGLATDGKVLFG--S-DGSSMLYQIDPQTLK-VIRKDIVRYKGREVRNL 238 (276)
Q Consensus 171 ~v~V~D~~tlk~i~~~~~~--~~-EGWGLT~Dg~~L~v--S-DGS~~L~viDp~t~~-vi~~I~V~~~g~pv~~l 238 (276)
.++.||-+|.+.++.+.-+ .| ...-++|||. +|. | ||+=+|++..|..-. +.+...+.++|..+..+
T Consensus 247 ~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGTirlWQt~~~~~~~~~~~~~~ed~~eev~s~ 320 (334)
T KOG0278|consen 247 KVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE-LYASGSEDGTIRLWQTTPGKTYGLWKCVKPEDDGEEVASP 320 (334)
T ss_pred EEEEEeccCCceeeecccCCCCceEEEEECCCCc-eeeccCCCceEEEEEecCCCchhhccccChhhhccccccc
Confidence 9999999999999997322 11 2334778875 444 3 378888888876644 55666666655544433
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.22 Score=49.18 Aligned_cols=116 Identities=11% Similarity=0.036 Sum_probs=79.3
Q ss_pred eEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEEEEEeeCCEEEEEeCCCCcEEEEE
Q 023864 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (276)
Q Consensus 108 QGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~LyqlTwk~~~v~V~D~~tlk~i~~~ 186 (276)
--+.|+|+|.-+++.+ |+..+|.||+.|.....+.+ +..-+-.-+++.. ++...---++|.+.+||+++.+++++-
T Consensus 119 l~~~fsp~g~~l~tGs--GD~TvR~WD~~TeTp~~t~K-gH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~ 195 (480)
T KOG0271|consen 119 LSVQFSPTGSRLVTGS--GDTTVRLWDLDTETPLFTCK-GHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRA 195 (480)
T ss_pred EEEEecCCCceEEecC--CCceEEeeccCCCCcceeec-CCccEEEEEEECCCcchhhccccCCeEEEecCCCCCccccc
Confidence 4678999988777666 99999999999987665544 2233444555543 455556668999999999999988753
Q ss_pred ecCCC--------CeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEE
Q 023864 187 THQMK--------DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKD 226 (276)
Q Consensus 187 ~~~~~--------EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I 226 (276)
--+.. |..-+.++...|--+-.++.+.++|..-.+.+..+
T Consensus 196 l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l 243 (480)
T KOG0271|consen 196 LRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL 243 (480)
T ss_pred ccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe
Confidence 21111 22235556665544557899999998877666544
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.2 Score=43.96 Aligned_cols=96 Identities=15% Similarity=0.127 Sum_probs=66.2
Q ss_pred ceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEee--CCEEEEEeCCCCc
Q 023864 107 TQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWL--QKTGFIYDQNNLN 181 (276)
Q Consensus 107 TQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk--~~~v~V~D~~tlk 181 (276)
..-+.++|+|. +....|. -...|..||.+ ++.+.. ++.... -.+... |..|...... ++.+.+||.++.+
T Consensus 62 I~~~~WsP~g~~favi~g~-~~~~v~lyd~~-~~~i~~--~~~~~~-n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~ 136 (194)
T PF08662_consen 62 IHDVAWSPNGNEFAVIYGS-MPAKVTLYDVK-GKKIFS--FGTQPR-NTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK 136 (194)
T ss_pred eEEEEECcCCCEEEEEEcc-CCcccEEEcCc-ccEeEe--ecCCCc-eEEEECCCCCEEEEEEccCCCcEEEEEECCCCE
Confidence 68999999874 6666774 34599999997 555444 343322 234543 3444444433 4679999999999
Q ss_pred EEEEEecCCCCeeEEeeCCCEEEEEC
Q 023864 182 KLEEFTHQMKDGWGLATDGKVLFGSD 207 (276)
Q Consensus 182 ~i~~~~~~~~EGWGLT~Dg~~L~vSD 207 (276)
.+.++..+..-...-+|||++|..+.
T Consensus 137 ~i~~~~~~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 137 KISTFEHSDATDVEWSPDGRYLATAT 162 (194)
T ss_pred EeeccccCcEEEEEEcCCCCEEEEEE
Confidence 99998876445556789999998865
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.39 Score=45.03 Aligned_cols=154 Identities=19% Similarity=0.272 Sum_probs=90.7
Q ss_pred eeEEEEEEecC-----CCCCceEEEEecC------CEEEEEcCCCCCCeEEEEeCCCCcEEEEe----------------
Q 023864 92 TIQVVNEFPHD-----PRAFTQGLLYAEN------DTLFESTGLYGRSSVRRVALETGKVEAIN---------------- 144 (276)
Q Consensus 92 t~~Vv~~~Phd-----~~aFTQGL~~~~d------g~LyeStG~yg~S~I~~iDl~tgkv~~~~---------------- 144 (276)
+-+++++|+.+ +..|.+-|.++.. +..|.+.- +...|.+||+++|+.-+..
T Consensus 43 t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~--~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~ 120 (287)
T PF03022_consen 43 TNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDS--GGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIG 120 (287)
T ss_dssp TTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEET--TTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEET
T ss_pred CCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCC--CcCcEEEEEccCCcEEEEecCCcceeccccceecc
Confidence 34688888765 4678888999862 47898765 6679999999999764432
Q ss_pred ----ecCCCceEEEEEEe-----CCEEEEEEeeCCEEEEEeCCCC---------------cEEEEEecCCCCeeEEeeCC
Q 023864 145 ----QMEGSYFGEGLTLL-----GEKLFQVTWLQKTGFIYDQNNL---------------NKLEEFTHQMKDGWGLATDG 200 (276)
Q Consensus 145 ----~l~~~~FgEGit~~-----g~~LyqlTwk~~~v~V~D~~tl---------------k~i~~~~~~~~EGWGLT~Dg 200 (276)
..+.+.| |+++. +..||--.--+.+.|.+..+-| +.+++-..+ ..|-.+.+ .
T Consensus 121 g~~~~~~dg~~--gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~-s~g~~~D~-~ 196 (287)
T PF03022_consen 121 GESFQWPDGIF--GIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQ-SDGMAIDP-N 196 (287)
T ss_dssp TEEEEETTSEE--EEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---S-ECEEEEET-T
T ss_pred CceEecCCCcc--ccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCC-CceEEECC-C
Confidence 1112334 44442 2467777767777777765422 222222111 23333443 5
Q ss_pred CEEEEEC-CCceEEEEcCCC-CcEEE-EEEeeeCCEeeeeeeeeEEEC---CEEEEEe
Q 023864 201 KVLFGSD-GSSMLYQIDPQT-LKVIR-KDIVRYKGREVRNLNELEFIK---GEVWANV 252 (276)
Q Consensus 201 ~~L~vSD-GS~~L~viDp~t-~~vi~-~I~V~~~g~pv~~lNELE~id---G~lyANv 252 (276)
..||.+| ..+.|..+|+.+ ++... .+- -.+.+-+..++.|-+.+ |+||+..
T Consensus 197 G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l-~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 197 GNLYFTDVEQNAIGCWDPDGPYTPENFEIL-AQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp TEEEEEECCCTEEEEEETTTSB-GCCEEEE-EE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CcEEEecCCCCeEEEEeCCCCcCccchhee-EEcCceeeccceeeeccccCceEEEEE
Confidence 6899999 899999999987 21111 222 23344466778888888 8999765
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.24 Score=48.65 Aligned_cols=115 Identities=17% Similarity=0.140 Sum_probs=69.4
Q ss_pred EEEEecCCE-EEEEcCCCCCCeEEEEeCCC-CcEEEEeecC-CCceEEEEEEeCCEEEEEEeeC--CEEEEEeCCCCcEE
Q 023864 109 GLLYAENDT-LFESTGLYGRSSVRRVALET-GKVEAINQME-GSYFGEGLTLLGEKLFQVTWLQ--KTGFIYDQNNLNKL 183 (276)
Q Consensus 109 GL~~~~dg~-LyeStG~yg~S~I~~iDl~t-gkv~~~~~l~-~~~FgEGit~~g~~LyqlTwk~--~~v~V~D~~tlk~i 183 (276)
...|+|||+ |+..+..-|...|..++++. +.....+.-. .....-....+|++|+.+.-.+ ..++++|.++.+..
T Consensus 285 ~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~ 364 (428)
T PRK01029 285 NPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY 364 (428)
T ss_pred CeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE
Confidence 568999985 54433333667888888753 2222222222 1222223445677787766543 47899999887653
Q ss_pred EEEecC-CCCeeEEeeCCCEEEE-EC--CCceEEEEcCCCCcEE
Q 023864 184 EEFTHQ-MKDGWGLATDGKVLFG-SD--GSSMLYQIDPQTLKVI 223 (276)
Q Consensus 184 ~~~~~~-~~EGWGLT~Dg~~L~v-SD--GS~~L~viDp~t~~vi 223 (276)
.-...+ ..+.-..++||+.|+. ++ |...|+.+|.++.+..
T Consensus 365 ~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~ 408 (428)
T PRK01029 365 QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR 408 (428)
T ss_pred EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 221111 1244557899998865 33 5789999999887654
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.83 Score=45.40 Aligned_cols=155 Identities=15% Similarity=0.135 Sum_probs=93.5
Q ss_pred EEEEecCCEEEEEcCCCCC-----CeEEEEeCCCCcEEEEee---cCC-CceEEEEEEeCCEEEEEEee-----CCEEEE
Q 023864 109 GLLYAENDTLFESTGLYGR-----SSVRRVALETGKVEAINQ---MEG-SYFGEGLTLLGEKLFQVTWL-----QKTGFI 174 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg~-----S~I~~iDl~tgkv~~~~~---l~~-~~FgEGit~~g~~LyqlTwk-----~~~v~V 174 (276)
+.+.. ++.||.-.|.... +.+.+||+++.+-..... +|. ...+-.++..+++||+.-=. -+.+++
T Consensus 170 ~~~~~-~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~ 248 (470)
T PLN02193 170 GIAQV-GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYS 248 (470)
T ss_pred EEEEE-CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEE
Confidence 45555 4789987775321 458899999886543221 232 23455677789999997532 367999
Q ss_pred EeCCCCcEE--EEE---ecCCCCeeEEeeCCCEEEEECC------CceEEEEcCCCCcEEEEEEeeeCCEee-eeeeeeE
Q 023864 175 YDQNNLNKL--EEF---THQMKDGWGLATDGKVLFGSDG------SSMLYQIDPQTLKVIRKDIVRYKGREV-RNLNELE 242 (276)
Q Consensus 175 ~D~~tlk~i--~~~---~~~~~EGWGLT~Dg~~L~vSDG------S~~L~viDp~t~~vi~~I~V~~~g~pv-~~lNELE 242 (276)
||+.+.+-. ... +.+ ..+-+++..++.||+-=| .+.++.+|+++.+-.. +... ...+. ..--.+.
T Consensus 249 yD~~t~~W~~l~~~~~~P~~-R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~-~~~~-~~~~~~R~~~~~~ 325 (470)
T PLN02193 249 FDTTTNEWKLLTPVEEGPTP-RSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFH-CSTP-GDSFSIRGGAGLE 325 (470)
T ss_pred EECCCCEEEEcCcCCCCCCC-ccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEe-CCCC-CCCCCCCCCcEEE
Confidence 999876543 222 222 345566666778888654 3468899999876542 2211 00110 0111234
Q ss_pred EECCEEEEEeC----CCCCeEEEEeCCCCc
Q 023864 243 FIKGEVWANVW----QVWPCIPYAYLQAFG 268 (276)
Q Consensus 243 ~idG~lyANvw----~s~d~I~vIDp~T~~ 268 (276)
.++|+||+--. .. +.+.+.||++.+
T Consensus 326 ~~~gkiyviGG~~g~~~-~dv~~yD~~t~~ 354 (470)
T PLN02193 326 VVQGKVWVVYGFNGCEV-DDVHYYDPVQDK 354 (470)
T ss_pred EECCcEEEEECCCCCcc-CceEEEECCCCE
Confidence 66888886432 14 678999998865
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.73 Score=44.11 Aligned_cols=154 Identities=18% Similarity=0.149 Sum_probs=87.3
Q ss_pred EEEEecCCE--EE-EEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCC--EEEEEEeeC----------CEEE
Q 023864 109 GLLYAENDT--LF-ESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGE--KLFQVTWLQ----------KTGF 173 (276)
Q Consensus 109 GL~~~~dg~--Ly-eStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~--~LyqlTwk~----------~~v~ 173 (276)
++.++|||+ +| ++.|.-+...|+++|+++|+.+.. .++...| .++++.++ .+|-..+.+ .+++
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i~~~~~-~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GIENPKF-SSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EEEEEES-EEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-ccccccc-ceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 577888875 33 467733457799999999987654 2332222 23677654 666666544 3478
Q ss_pred EEeCCCCcEEEEEecC---CCC---eeEEeeCCCEEEEE--CC-C-ceEEEEcCCCC----cEEEEEEeeeCCEeeeeee
Q 023864 174 IYDQNNLNKLEEFTHQ---MKD---GWGLATDGKVLFGS--DG-S-SMLYQIDPQTL----KVIRKDIVRYKGREVRNLN 239 (276)
Q Consensus 174 V~D~~tlk~i~~~~~~---~~E---GWGLT~Dg~~L~vS--DG-S-~~L~viDp~t~----~vi~~I~V~~~g~pv~~lN 239 (276)
..+..|-..-...=++ ... +.+.+.||++|+++ .+ + +.|+++|..+. ...+.+.-..++.. .
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~----~ 281 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVE----Y 281 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-E----E
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceE----E
Confidence 8887776543222121 123 45578999998872 34 5 79999999875 33444444433321 2
Q ss_pred eeEEECCEEE-EEeCCCC-CeEEEEeCCCCc
Q 023864 240 ELEFIKGEVW-ANVWQVW-PCIPYAYLQAFG 268 (276)
Q Consensus 240 ELE~idG~ly-ANvw~s~-d~I~vIDp~T~~ 268 (276)
.++..++.+| ..+.... ..|+.+|.++..
T Consensus 282 ~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~ 312 (414)
T PF02897_consen 282 YVDHHGDRLYILTNDDAPNGRLVAVDLADPS 312 (414)
T ss_dssp EEEEETTEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred EEEccCCEEEEeeCCCCCCcEEEEecccccc
Confidence 2334466655 2334321 367777777654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.19 Score=54.27 Aligned_cols=138 Identities=16% Similarity=0.140 Sum_probs=101.7
Q ss_pred CCCCceeeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEE
Q 023864 85 DQSPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLF 163 (276)
Q Consensus 85 ~~~~~~~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~Ly 163 (276)
.....+...+++..+-- ...=.+-+.++||+.+++|.| -+++|.+||..|.+.+.... +..-+.-|++++. ++.+
T Consensus 111 g~~~~vE~wk~~~~l~~-H~~DV~Dv~Wsp~~~~lvS~s--~DnsViiwn~~tF~~~~vl~-~H~s~VKGvs~DP~Gky~ 186 (942)
T KOG0973|consen 111 GGAKNVESWKVVSILRG-HDSDVLDVNWSPDDSLLVSVS--LDNSVIIWNAKTFELLKVLR-GHQSLVKGVSWDPIGKYF 186 (942)
T ss_pred ccccccceeeEEEEEec-CCCccceeccCCCccEEEEec--ccceEEEEccccceeeeeee-cccccccceEECCccCee
Confidence 34555667777777752 233457999999999999999 78999999999997665543 3345667999987 7877
Q ss_pred EEEeeCCEEEEEeCCCCcEEEEEecCCCCe--------eEEeeCCCEEEEEC----CCceEEEEcCCCCcEEEEE
Q 023864 164 QVTWLQKTGFIYDQNNLNKLEEFTHQMKDG--------WGLATDGKVLFGSD----GSSMLYQIDPQTLKVIRKD 226 (276)
Q Consensus 164 qlTwk~~~v~V~D~~tlk~i~~~~~~~~EG--------WGLT~Dg~~L~vSD----GS~~L~viDp~t~~vi~~I 226 (276)
...-.++++.||+..++...+.+.-+-.|- -+-+|||++|-..+ |...+.+|+-+|-+.-...
T Consensus 187 ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~L 261 (942)
T KOG0973|consen 187 ASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDL 261 (942)
T ss_pred eeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeee
Confidence 778888999999999988888885331011 11368999998865 4778899998877654433
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.58 Score=44.42 Aligned_cols=36 Identities=22% Similarity=0.331 Sum_probs=25.9
Q ss_pred eeEEEEEEec--CCCCCceEEEEecCCEEEEEcCCCCC
Q 023864 92 TIQVVNEFPH--DPRAFTQGLLYAENDTLFESTGLYGR 127 (276)
Q Consensus 92 t~~Vv~~~Ph--d~~aFTQGL~~~~dg~LyeStG~yg~ 127 (276)
.-.|+...|. ...-+..+|.|.|||.||.++|..+.
T Consensus 99 ~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 99 EEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred ceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence 3456677787 56677788999999999999997654
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.2 Score=47.99 Aligned_cols=91 Identities=15% Similarity=0.298 Sum_probs=66.5
Q ss_pred CCCcEEEEeecCCCceEEEEEEeC---CEEEEEEeeCCEEEEEeCCCCcEEEEEecC---CCCeeE-EeeCCCEEEEECC
Q 023864 136 ETGKVEAINQMEGSYFGEGLTLLG---EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ---MKDGWG-LATDGKVLFGSDG 208 (276)
Q Consensus 136 ~tgkv~~~~~l~~~~FgEGit~~g---~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~---~~EGWG-LT~Dg~~L~vSDG 208 (276)
+.||++..+.||.+ |-||+.+. ..++.+---..-..+||+++.+.+.++.-+ .-.|-| +++||.+||.|.+
T Consensus 56 eaGk~v~~~~lpaR--~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEn 133 (366)
T COG3490 56 EAGKIVFATALPAR--GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATEN 133 (366)
T ss_pred cCCceeeeeecccc--cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecC
Confidence 46889999999988 77888875 566666666677888999999998888643 225666 7999999999874
Q ss_pred -----CceEEEEcC-CCCcEEEEEEe
Q 023864 209 -----SSMLYQIDP-QTLKVIRKDIV 228 (276)
Q Consensus 209 -----S~~L~viDp-~t~~vi~~I~V 228 (276)
-.-|-+.|. +-|+-+.++..
T Consensus 134 dfd~~rGViGvYd~r~~fqrvgE~~t 159 (366)
T COG3490 134 DFDPNRGVIGVYDAREGFQRVGEFST 159 (366)
T ss_pred CCCCCCceEEEEecccccceeccccc
Confidence 224556664 34566666655
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.64 Score=49.30 Aligned_cols=134 Identities=15% Similarity=0.124 Sum_probs=91.6
Q ss_pred EEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe-CCEEEEEEeeCCEEE
Q 023864 95 VVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQKTGF 173 (276)
Q Consensus 95 Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~-g~~LyqlTwk~~~v~ 173 (276)
|++.--| ..-+--++|+|||++...++ .+.+|.+||...|--..+..-... =-.|+.+. .++.....-.+|+|-
T Consensus 343 VlKQQgH--~~~i~~l~YSpDgq~iaTG~--eDgKVKvWn~~SgfC~vTFteHts-~Vt~v~f~~~g~~llssSLDGtVR 417 (893)
T KOG0291|consen 343 VLKQQGH--SDRITSLAYSPDGQLIATGA--EDGKVKVWNTQSGFCFVTFTEHTS-GVTAVQFTARGNVLLSSSLDGTVR 417 (893)
T ss_pred eeecccc--ccceeeEEECCCCcEEEecc--CCCcEEEEeccCceEEEEeccCCC-ceEEEEEEecCCEEEEeecCCeEE
Confidence 3444444 33456899999999988555 899999999999865444332221 01234443 345555666899999
Q ss_pred EEeCCCCcEEEEEecCCCCeeE---EeeC--CCEEEEECC-CceEEEEcCCCCcEEEEEEeeeCCEeeee
Q 023864 174 IYDQNNLNKLEEFTHQMKDGWG---LATD--GKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRN 237 (276)
Q Consensus 174 V~D~~tlk~i~~~~~~~~EGWG---LT~D--g~~L~vSDG-S~~L~viDp~t~~vi~~I~V~~~g~pv~~ 237 (276)
.+|....+.-++|..| +... ++-| |+.+...+- +=.|++++.+|++++..+.=.+ .||..
T Consensus 418 AwDlkRYrNfRTft~P--~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHE--gPVs~ 483 (893)
T KOG0291|consen 418 AWDLKRYRNFRTFTSP--EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHE--GPVSG 483 (893)
T ss_pred eeeecccceeeeecCC--CceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCC--Cccee
Confidence 9999999999999765 4433 4445 777777664 5589999999999876655443 35554
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.54 Score=44.53 Aligned_cols=131 Identities=16% Similarity=0.179 Sum_probs=89.8
Q ss_pred CCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC-CceEEEEEEe--CCEEEEEEeeCCEEEEEeCCCCc
Q 023864 105 AFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG-SYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLN 181 (276)
Q Consensus 105 aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~-~~FgEGit~~--g~~LyqlTwk~~~v~V~D~~tlk 181 (276)
+-.+-+.+.-||+-..|.. -+.++++++++-++.......-. .---+-+..+ +..++..+.-++++-++|..+.|
T Consensus 21 ~~v~Sv~wn~~g~~lasgs--~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k 98 (313)
T KOG1407|consen 21 QKVHSVAWNCDGTKLASGS--FDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGK 98 (313)
T ss_pred hcceEEEEcccCceeeecc--cCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCc
Confidence 3346677777776555433 45678888888774432211111 1111223333 35788889999999999999999
Q ss_pred EEEEEecCCCCeeEEe--eCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE
Q 023864 182 KLEEFTHQMKDGWGLA--TDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI 244 (276)
Q Consensus 182 ~i~~~~~~~~EGWGLT--~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i 244 (276)
.+.++... +|-.-++ |||++..+.|-.+.|.+||..++++..+-+-.. ..||+.|.
T Consensus 99 ~~~~i~~~-~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~------e~ne~~w~ 156 (313)
T KOG1407|consen 99 CTARIETK-GENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF------EVNEISWN 156 (313)
T ss_pred EEEEeecc-CcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccc------eeeeeeec
Confidence 99999765 4666554 799999999999999999999998876544432 45666655
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.94 Score=42.41 Aligned_cols=95 Identities=13% Similarity=0.094 Sum_probs=57.5
Q ss_pred EecCCEEEEEcCCCCCCeEEEEeCC--CCcEEEEeecC-CCceEEEEEEeCCEEEEEEeeC-----------CEEEEEeC
Q 023864 112 YAENDTLFESTGLYGRSSVRRVALE--TGKVEAINQME-GSYFGEGLTLLGEKLFQVTWLQ-----------KTGFIYDQ 177 (276)
Q Consensus 112 ~~~dg~LyeStG~yg~S~I~~iDl~--tgkv~~~~~l~-~~~FgEGit~~g~~LyqlTwk~-----------~~v~V~D~ 177 (276)
.. +++||+..| +..+.+.++|++ +.+-....+++ .....-+++..+++||++-=.. +.++.||+
T Consensus 15 ~~-~~~vyv~GG-~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~ 92 (346)
T TIGR03547 15 II-GDKVYVGLG-SAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDP 92 (346)
T ss_pred EE-CCEEEEEcc-ccCCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEEC
Confidence 44 579999766 456789999974 34444444565 2334557888899999986431 46889998
Q ss_pred CCCcEEEEE-ecCC-CCeeEEe-eCCCEEEEECC
Q 023864 178 NNLNKLEEF-THQM-KDGWGLA-TDGKVLFGSDG 208 (276)
Q Consensus 178 ~tlk~i~~~-~~~~-~EGWGLT-~Dg~~L~vSDG 208 (276)
.+.+-..-- +.+. ..|-+.+ .-+..||+--|
T Consensus 93 ~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG 126 (346)
T TIGR03547 93 KKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGG 126 (346)
T ss_pred CCCEEecCCCCCCCcccceeEEEEeCCEEEEEcC
Confidence 765533211 2221 2233333 45667777544
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.34 Score=48.45 Aligned_cols=74 Identities=9% Similarity=0.077 Sum_probs=49.1
Q ss_pred EEeeCCCEEEEEC---------C----CceEEEEcCCCCcEEEEEEeee--C-CE-------------------eeeeee
Q 023864 195 GLATDGKVLFGSD---------G----SSMLYQIDPQTLKVIRKDIVRY--K-GR-------------------EVRNLN 239 (276)
Q Consensus 195 GLT~Dg~~L~vSD---------G----S~~L~viDp~t~~vi~~I~V~~--~-g~-------------------pv~~lN 239 (276)
-.-++|..|+.+. + .+.|..+| .+++++..+...+ + .+ ---|+|
T Consensus 196 ~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~N 274 (477)
T PF05935_consen 196 DELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHIN 274 (477)
T ss_dssp EE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EE
T ss_pred EECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccC
Confidence 3456788887654 1 67899999 9999999998864 1 11 114789
Q ss_pred eeEEEC--CEEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 240 ELEFIK--GEVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 240 ELE~id--G~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
-+.|.. +.|.++.-.. +.|++||.+|+++.
T Consensus 275 si~yd~~dd~iivSsR~~-s~V~~Id~~t~~i~ 306 (477)
T PF05935_consen 275 SIDYDPSDDSIIVSSRHQ-SAVIKIDYRTGKIK 306 (477)
T ss_dssp EEEEETTTTEEEEEETTT--EEEEEE-TTS-EE
T ss_pred ccEEeCCCCeEEEEcCcc-eEEEEEECCCCcEE
Confidence 999985 7899999999 99999999997654
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.69 Score=44.61 Aligned_cols=121 Identities=13% Similarity=0.160 Sum_probs=77.8
Q ss_pred CceEEEEEEe--CCEEEEEEeeCCEEEEEeCCCCcEE---EEEecC-CCCeeE---EeeCCCEEEEE----C--------
Q 023864 149 SYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLNKL---EEFTHQ-MKDGWG---LATDGKVLFGS----D-------- 207 (276)
Q Consensus 149 ~~FgEGit~~--g~~LyqlTwk~~~v~V~D~~tlk~i---~~~~~~-~~EGWG---LT~Dg~~L~vS----D-------- 207 (276)
-|.|-.|+.. ++.||..+.+++++-|||. +++++ +.|.-+ .|.|++ +-.-|..|||+ |
T Consensus 139 vYkGLAi~~~~~~~~LYaadF~~g~IDVFd~-~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~ 217 (336)
T TIGR03118 139 VYKGLAVGPTGGGDYLYAANFRQGRIDVFKG-SFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVA 217 (336)
T ss_pred eeeeeEEeecCCCceEEEeccCCCceEEecC-ccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCccccccc
Confidence 4554444433 6899999999999999995 44432 334322 345554 66778999986 2
Q ss_pred --CCceEEEEcCCCCcEEEEEEeee-----CCEeeeeeeeeEEECCEEEEEeCCCCCeEEEEeCCCCcEEEEEE
Q 023864 208 --GSSMLYQIDPQTLKVIRKDIVRY-----KGREVRNLNELEFIKGEVWANVWQVWPCIPYAYLQAFGSSLVYV 274 (276)
Q Consensus 208 --GS~~L~viDp~t~~vi~~I~V~~-----~g~pv~~lNELE~idG~lyANvw~s~d~I~vIDp~T~~v~l~~~ 274 (276)
|-..|-++|+. ++.++++..+. +|..+.- -+.-.-.|.|.+.++.+ .+|-+.||.+|+-. ++|
T Consensus 218 G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~AP-a~FG~~sg~lLVGNFGD-G~InaFD~~sG~~~-g~L 287 (336)
T TIGR03118 218 GAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAP-ESFGSLSGALLVGNFGD-GTINAYDPQSGAQL-GQL 287 (336)
T ss_pred CCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeCh-hhhCCCCCCeEEeecCC-ceeEEecCCCCcee-eee
Confidence 12377888865 77888876542 2221110 00111257899999998 99999999996643 555
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.25 Score=46.34 Aligned_cols=81 Identities=19% Similarity=0.173 Sum_probs=49.6
Q ss_pred CeEEEEeCCCCcEEEEeecCC-CceEEEEEEeCCEEEEEEee------CCEEEEEe--CC--CCcEEEEEecCC---CCe
Q 023864 128 SSVRRVALETGKVEAINQMEG-SYFGEGLTLLGEKLFQVTWL------QKTGFIYD--QN--NLNKLEEFTHQM---KDG 193 (276)
Q Consensus 128 S~I~~iDl~tgkv~~~~~l~~-~~FgEGit~~g~~LyqlTwk------~~~v~V~D--~~--tlk~i~~~~~~~---~EG 193 (276)
+.+.+||+.+++-...-++|. ..++-+++..+++||++-=. ...+++|| ++ ..+.+..++.+. ++|
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~ 247 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEG 247 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCcccc
Confidence 679999999998766667774 45677888999999998532 23355554 44 444444444321 123
Q ss_pred -eE--EeeCCCEEEEECC
Q 023864 194 -WG--LATDGKVLFGSDG 208 (276)
Q Consensus 194 -WG--LT~Dg~~L~vSDG 208 (276)
.+ .+.-+..||+-=|
T Consensus 248 ~~~~~a~~~~~~Iyv~GG 265 (346)
T TIGR03547 248 LAGAFAGISNGVLLVAGG 265 (346)
T ss_pred ccEEeeeEECCEEEEeec
Confidence 12 3334556777544
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.3 Score=47.84 Aligned_cols=148 Identities=17% Similarity=0.175 Sum_probs=98.7
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCC---cEEEEeecC-------------CCceEEEEEE
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETG---KVEAINQME-------------GSYFGEGLTL 157 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tg---kv~~~~~l~-------------~~~FgEGit~ 157 (276)
.-+.++|- +.-|..=+.+.+||+|+.|++ .+..|++|-.+|+ .+.+.++.+ .-.++.|-+
T Consensus 226 ~cv~t~~~-h~ewvr~v~v~~DGti~As~s--~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~- 301 (406)
T KOG0295|consen 226 YCVKTFPG-HSEWVRMVRVNQDGTIIASCS--NDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGST- 301 (406)
T ss_pred eeEEeccC-chHhEEEEEecCCeeEEEecC--CCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCC-
Confidence 34677764 355889999999999999988 8899999999998 343433322 112222222
Q ss_pred eCCEEEEEEeeCCEEEEEeCCCCcEEEEEe-cC-CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEee
Q 023864 158 LGEKLFQVTWLQKTGFIYDQNNLNKLEEFT-HQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREV 235 (276)
Q Consensus 158 ~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~-~~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv 235 (276)
.+...-..--+++++-++|..|...+-++. +. .--|..+.|-|++|+----..+|.++|.++.+-.+.+.-..
T Consensus 302 ~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~----- 376 (406)
T KOG0295|consen 302 NGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHE----- 376 (406)
T ss_pred CCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCc-----
Confidence 123444555578999999999999998885 22 12344577888887663346789999999998877776432
Q ss_pred eeeeeeEEECCEEEE
Q 023864 236 RNLNELEFIKGEVWA 250 (276)
Q Consensus 236 ~~lNELE~idG~lyA 250 (276)
+..+-|.+.+...|+
T Consensus 377 hfvt~lDfh~~~p~V 391 (406)
T KOG0295|consen 377 HFVTSLDFHKTAPYV 391 (406)
T ss_pred ceeEEEecCCCCceE
Confidence 344444555444443
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.26 Score=49.07 Aligned_cols=176 Identities=13% Similarity=0.060 Sum_probs=113.5
Q ss_pred eeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEE--eecCCCceEEEEEEeCCEEEEEEee
Q 023864 91 YTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAI--NQMEGSYFGEGLTLLGEKLFQVTWL 168 (276)
Q Consensus 91 ~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~--~~l~~~~FgEGit~~g~~LyqlTwk 168 (276)
.+-+....||+....-.+--++.|||.=++ ||. -+-.+..||++......= +.. +...-..+|.+|..++.++ .
T Consensus 299 ~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V-~Gs-~dr~i~~wdlDgn~~~~W~gvr~-~~v~dlait~Dgk~vl~v~-~ 374 (519)
T KOG0293|consen 299 DTGDLRHLYPSGLGFSVSSCAWCPDGFRFV-TGS-PDRTIIMWDLDGNILGNWEGVRD-PKVHDLAITYDGKYVLLVT-V 374 (519)
T ss_pred CcchhhhhcccCcCCCcceeEEccCCceeE-ecC-CCCcEEEecCCcchhhccccccc-ceeEEEEEcCCCcEEEEEe-c
Confidence 455677788886333446678889987665 452 456788999975432111 111 4567777888899999888 7
Q ss_pred CCEEEEEeCCCCcEEEEEecC-CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECC-
Q 023864 169 QKTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKG- 246 (276)
Q Consensus 169 ~~~v~V~D~~tlk~i~~~~~~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG- 246 (276)
+.++++|+..+....+-+..+ .---..++.||+...++-....++.+|.+..+++++-.-..+|+-+-+- |.+|
T Consensus 375 d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrS----CFgg~ 450 (519)
T KOG0293|consen 375 DKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRS----CFGGG 450 (519)
T ss_pred ccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEe----ccCCC
Confidence 889999999888777666543 1123347789999999889999999999977665543332233322111 2333
Q ss_pred -EEEEEeCCCCCeEEEEeCCCCcEEEEEEe
Q 023864 247 -EVWANVWQVWPCIPYAYLQAFGSSLVYVT 275 (276)
Q Consensus 247 -~lyANvw~s~d~I~vIDp~T~~v~l~~~~ 275 (276)
.-|+.-...|+.|.+=+-.+|+ .|++++
T Consensus 451 ~~~fiaSGSED~kvyIWhr~sgk-ll~~Ls 479 (519)
T KOG0293|consen 451 NDKFIASGSEDSKVYIWHRISGK-LLAVLS 479 (519)
T ss_pred CcceEEecCCCceEEEEEccCCc-eeEeec
Confidence 2455555554677777777744 446655
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.22 Score=49.33 Aligned_cols=118 Identities=14% Similarity=0.185 Sum_probs=85.2
Q ss_pred cCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEecC---CCCeeE---
Q 023864 122 TGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ---MKDGWG--- 195 (276)
Q Consensus 122 tG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~---~~EGWG--- 195 (276)
+|-.. -.||.||..++.....++++...=.--+...+.+|-.. -.++.+-++|..++++...|.-+ -.--|.
T Consensus 317 SgH~D-kkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLss-sRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvv 394 (459)
T KOG0288|consen 317 SGHFD-KKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSS-SRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVV 394 (459)
T ss_pred ecccc-cceEEEeccCCceeeEeecCcceeeEeeccCCeEEeee-cCCCceeeeecccccEEEEeeccccccccccceeE
Confidence 45433 45999999999999999999876655555556666666 78999999999999999999743 112244
Q ss_pred EeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE
Q 023864 196 LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI 244 (276)
Q Consensus 196 LT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i 244 (276)
++|||.++-..-....|++++..|.|+.+...-.. .+ ..++-++|.
T Consensus 395 fSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~--s~-~aI~s~~W~ 440 (459)
T KOG0288|consen 395 FSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLST--SN-AAITSLSWN 440 (459)
T ss_pred ECCCCceeeeccCCCcEEEEEccCceEEEEeccCC--CC-cceEEEEEc
Confidence 67888776664446689999999999987766532 11 135555654
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.55 Score=44.98 Aligned_cols=140 Identities=13% Similarity=0.001 Sum_probs=77.5
Q ss_pred CeEEEEeCCCCcEEEEeecCC-CceEEEEEEeCCEEEEEEee------CCEE--EEEeCCCCcE--EEEEecCC----CC
Q 023864 128 SSVRRVALETGKVEAINQMEG-SYFGEGLTLLGEKLFQVTWL------QKTG--FIYDQNNLNK--LEEFTHQM----KD 192 (276)
Q Consensus 128 S~I~~iDl~tgkv~~~~~l~~-~~FgEGit~~g~~LyqlTwk------~~~v--~V~D~~tlk~--i~~~~~~~----~E 192 (276)
+.|.+||+++++-...-++|. ...+-+++..+++||++-=. ...+ +.+|+++.+- +..++.+. ++
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~ 268 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQE 268 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCC
Confidence 579999999988765556764 55677888899999998632 2223 3455554443 33333220 12
Q ss_pred ee-E--EeeCCCEEEEECCCc-----------------------eEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECC
Q 023864 193 GW-G--LATDGKVLFGSDGSS-----------------------MLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKG 246 (276)
Q Consensus 193 GW-G--LT~Dg~~L~vSDGS~-----------------------~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG 246 (276)
++ + .+.-++.||+.=|.+ .+.++||++.+-.. +.....|.... -....+|
T Consensus 269 ~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~---~~~lp~~r~~~-~av~~~~ 344 (376)
T PRK14131 269 GVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQK---VGELPQGLAYG-VSVSWNN 344 (376)
T ss_pred ccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccc---cCcCCCCccce-EEEEeCC
Confidence 32 2 223345677754421 24567888765432 11111111111 1335578
Q ss_pred EEEEEeCCCC-----CeEEEEeCCCCcEEE
Q 023864 247 EVWANVWQVW-----PCIPYAYLQAFGSSL 271 (276)
Q Consensus 247 ~lyANvw~s~-----d~I~vIDp~T~~v~l 271 (276)
+||+-=..+. +.|.++.++.++.++
T Consensus 345 ~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 345 GVLLIGGETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred EEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence 8776554321 478888888755543
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.19 Score=48.94 Aligned_cols=135 Identities=16% Similarity=0.194 Sum_probs=97.5
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEE-EEEe--CCEEEEEEee
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEG-LTLL--GEKLFQVTWL 168 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEG-it~~--g~~LyqlTwk 168 (276)
+-+.++++.- ...|+.-..|.+||.-..|+. .+..|.+|+..|++-+.+.+.+...++.- +-+. |-.-+++-.+
T Consensus 337 SGK~LKEfrG-HsSyvn~a~ft~dG~~iisaS--sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr 413 (508)
T KOG0275|consen 337 SGKCLKEFRG-HSSYVNEATFTDDGHHIISAS--SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR 413 (508)
T ss_pred cchhHHHhcC-ccccccceEEcCCCCeEEEec--CCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcC
Confidence 3455666653 588999999999998666666 67899999999987666664443222211 1111 3455566667
Q ss_pred CCEEEEEeCCCCcEEEEEecCCCCeeE-----EeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeee
Q 023864 169 QKTGFIYDQNNLNKLEEFTHQMKDGWG-----LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY 230 (276)
Q Consensus 169 ~~~v~V~D~~tlk~i~~~~~~~~EGWG-----LT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~ 230 (276)
++++++.+. ..+++++|..+..||=. |+|-|+++|.--.+..+|-+...++++.+++.|.+
T Consensus 414 sntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhE 479 (508)
T KOG0275|consen 414 SNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHE 479 (508)
T ss_pred CCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccc
Confidence 888888874 46777888766556633 78899999997778899999999999999999975
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.26 E-value=1.9 Score=43.56 Aligned_cols=172 Identities=11% Similarity=0.083 Sum_probs=105.3
Q ss_pred CceeeeEEEEEE--ecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCc-eEEEEEEeCCEEEE
Q 023864 88 PSIYTIQVVNEF--PHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSY-FGEGLTLLGEKLFQ 164 (276)
Q Consensus 88 ~~~~t~~Vv~~~--Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~-FgEGit~~g~~Lyq 164 (276)
+....++-++.. -|..+.=.+-+.|+|.-.|...+|+-|.=+|..+|-++...+..+.|..-| +-.-++..|.....
T Consensus 195 ~~tl~~krlkDaNa~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 195 PGTLNIKRLKDANAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred CceeeeEeecccccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEE
Confidence 344455555544 244556667889999777877789767777888888887777776555432 22223334442333
Q ss_pred EEeeCCEEEEEeCCCCcEEEEEe-cC----CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeee
Q 023864 165 VTWLQKTGFIYDQNNLNKLEEFT-HQ----MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLN 239 (276)
Q Consensus 165 lTwk~~~v~V~D~~tlk~i~~~~-~~----~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lN 239 (276)
..-+..-.+.||..+.|+.+-=+ ++ .-|-..+++|++.|...--...|+++...|.+.+.+++..- .+-
T Consensus 275 ~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG------~v~ 348 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEG------VVS 348 (514)
T ss_pred ecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeecc------EEe
Confidence 33455677889988777654322 22 12556688999966553338899999999999988877752 333
Q ss_pred eeEEE-CCE-EEEEeCCCCCeEEEEeCCCC
Q 023864 240 ELEFI-KGE-VWANVWQVWPCIPYAYLQAF 267 (276)
Q Consensus 240 ELE~i-dG~-lyANvw~s~d~I~vIDp~T~ 267 (276)
+..|. ||+ ||+.+ .+ ..|++.|..+.
T Consensus 349 ~~~fsSdsk~l~~~~-~~-GeV~v~nl~~~ 376 (514)
T KOG2055|consen 349 DFTFSSDSKELLASG-GT-GEVYVWNLRQN 376 (514)
T ss_pred eEEEecCCcEEEEEc-CC-ceEEEEecCCc
Confidence 33343 443 44443 34 45666555553
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.56 Score=47.26 Aligned_cols=153 Identities=10% Similarity=0.067 Sum_probs=100.5
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEe-ecCCCce-------EEEEEEeC-CEEEEEEeeCCEEEE
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAIN-QMEGSYF-------GEGLTLLG-EKLFQVTWLQKTGFI 174 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~-~l~~~~F-------gEGit~~g-~~LyqlTwk~~~v~V 174 (276)
+.=+-+|.|.|.|.|+.|+- .+..+..|....+.-.+.. .-.+.++ |-+..=.+ +......-.+.+|.+
T Consensus 359 ~g~V~alk~n~tg~LLaS~S--dD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~l 436 (524)
T KOG0273|consen 359 HGEVNALKWNPTGSLLASCS--DDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKL 436 (524)
T ss_pred cCceEEEEECCCCceEEEec--CCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEE
Confidence 44457899998889988877 8888999885543221111 0001111 00000011 223333346899999
Q ss_pred EeCCCCcEEEEE-ecC-CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEE
Q 023864 175 YDQNNLNKLEEF-THQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWAN 251 (276)
Q Consensus 175 ~D~~tlk~i~~~-~~~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyAN 251 (276)
||...+..+.+| .++ .-.-..+.|||++|---+-+..|++++.++.++.+.-.=+. .++||-|- +|.....
T Consensus 437 wdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~------~Ifel~Wn~~G~kl~~ 510 (524)
T KOG0273|consen 437 WDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG------GIFELCWNAAGDKLGA 510 (524)
T ss_pred EEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC------eEEEEEEcCCCCEEEE
Confidence 999999999999 333 12445578999999888888999999999999987765443 48899886 4544444
Q ss_pred eCCCCCeEEEEeCC
Q 023864 252 VWQVWPCIPYAYLQ 265 (276)
Q Consensus 252 vw~s~d~I~vIDp~ 265 (276)
+... +.|.++|..
T Consensus 511 ~~sd-~~vcvldlr 523 (524)
T KOG0273|consen 511 CASD-GSVCVLDLR 523 (524)
T ss_pred EecC-CCceEEEec
Confidence 5455 888888853
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.5 Score=45.24 Aligned_cols=116 Identities=14% Similarity=0.113 Sum_probs=68.6
Q ss_pred eEEEEEEeC-CEEEEEEee-----------C-CEEEEEeCC--CCc--EEEEEecC--CCCeeEEeeCCCEEEEECCCce
Q 023864 151 FGEGLTLLG-EKLFQVTWL-----------Q-KTGFIYDQN--NLN--KLEEFTHQ--MKDGWGLATDGKVLFGSDGSSM 211 (276)
Q Consensus 151 FgEGit~~g-~~LyqlTwk-----------~-~~v~V~D~~--tlk--~i~~~~~~--~~EGWGLT~Dg~~L~vSDGS~~ 211 (276)
.+++|+++. ++||++... . +++.+++.. +.+ ....|.-+ .+.|..+.++| |||++.. +
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~-~ 91 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP-D 91 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC-e
Confidence 466888875 799999752 2 488888653 223 23344322 34666666666 9999844 5
Q ss_pred EEEE-cCCC-CcE--EEEEEee-eC---CEeeeeeeeeEEE-CCEEEEEeCCC------------C------CeEEEEeC
Q 023864 212 LYQI-DPQT-LKV--IRKDIVR-YK---GREVRNLNELEFI-KGEVWANVWQV------------W------PCIPYAYL 264 (276)
Q Consensus 212 L~vi-Dp~t-~~v--i~~I~V~-~~---g~pv~~lNELE~i-dG~lyANvw~s------------~------d~I~vIDp 264 (276)
|+.+ |.+. .+. .+++-+. .. ..+.+.+|-+.+- ||+||+++... . ..|.++||
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 7655 6542 111 1122222 11 1134567778874 78999987621 0 25999999
Q ss_pred CCCcE
Q 023864 265 QAFGS 269 (276)
Q Consensus 265 ~T~~v 269 (276)
.+++.
T Consensus 172 dg~~~ 176 (367)
T TIGR02604 172 DGGKL 176 (367)
T ss_pred CCCeE
Confidence 98654
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=95.22 E-value=1.6 Score=44.60 Aligned_cols=149 Identities=14% Similarity=0.022 Sum_probs=92.6
Q ss_pred ecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCc-eEEEEEEeCCEEEEEEeeCCEEEEEeCC
Q 023864 100 PHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSY-FGEGLTLLGEKLFQVTWLQKTGFIYDQN 178 (276)
Q Consensus 100 Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~-FgEGit~~g~~LyqlTwk~~~v~V~D~~ 178 (276)
.||..-| +|..-.+|+|.- .| .+-+|..|| ..-+-++.+++|+.+ +.--++.-+..||+=|-++..++===-+
T Consensus 285 aH~ggv~--~L~~lr~GtllS-Gg--KDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~ 358 (626)
T KOG2106|consen 285 AHDGGVF--SLCMLRDGTLLS-GG--KDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLEN 358 (626)
T ss_pred ecCCceE--EEEEecCccEee-cC--ccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecC
Confidence 7888888 898888999984 44 566799999 566667888899653 2223333334588888777665532223
Q ss_pred CCcEEEEEecCCCCeeEEe-eCCCEEEEECC-CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCCC
Q 023864 179 NLNKLEEFTHQMKDGWGLA-TDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQV 255 (276)
Q Consensus 179 tlk~i~~~~~~~~EGWGLT-~Dg~~L~vSDG-S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~s 255 (276)
.+.++-.... .|=|||+ +..+.+|++-| ...+..++ ..+++=++.+.+..+.+. +. -| +.|-=-.+
T Consensus 359 ~f~~~v~gh~--delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~------fhpsg-~va~Gt~~ 427 (626)
T KOG2106|consen 359 GFTLTVQGHG--DELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECAD------FHPSG-VVAVGTAT 427 (626)
T ss_pred CceEEEEecc--cceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEee------ccCcc-eEEEeecc
Confidence 3333333332 3889964 55667777776 77888888 667766666665333221 11 23 33333345
Q ss_pred CCeEEEEeCCC
Q 023864 256 WPCIPYAYLQA 266 (276)
Q Consensus 256 ~d~I~vIDp~T 266 (276)
..-.|+|.+|
T Consensus 428 -G~w~V~d~e~ 437 (626)
T KOG2106|consen 428 -GRWFVLDTET 437 (626)
T ss_pred -ceEEEEeccc
Confidence 6677777777
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.79 Score=45.12 Aligned_cols=158 Identities=11% Similarity=0.043 Sum_probs=101.9
Q ss_pred CCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeC-CEEEEEeCCCCc
Q 023864 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ-KTGFIYDQNNLN 181 (276)
Q Consensus 103 ~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~-~~v~V~D~~tlk 181 (276)
...|+.-+.++|.++.|.+.. ++-.|.+||++||++..+.. +----.+|+++.+.+=|+-.-.+ +.+--||....|
T Consensus 150 HlgWVr~vavdP~n~wf~tgs--~DrtikIwDlatg~Lkltlt-Ghi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nk 226 (460)
T KOG0285|consen 150 HLGWVRSVAVDPGNEWFATGS--ADRTIKIWDLATGQLKLTLT-GHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNK 226 (460)
T ss_pred ccceEEEEeeCCCceeEEecC--CCceeEEEEcccCeEEEeec-chhheeeeeeecccCceEEEecCCCeeEEEechhhh
Confidence 478999999999777776544 78899999999999876643 12223679999887767666544 556669999999
Q ss_pred EEEEEecCC--CCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE--CCEEEEEeCCCCC
Q 023864 182 KLEEFTHQM--KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGEVWANVWQVWP 257 (276)
Q Consensus 182 ~i~~~~~~~--~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i--dG~lyANvw~s~d 257 (276)
+|+.+.--+ -.+..+.|--+.|+-.-.++.+.++|-.|-.-+....=.. .+|.. ..+- |+.|+-.- ++ .
T Consensus 227 vIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~--~~V~~---V~~~~~dpqvit~S-~D-~ 299 (460)
T KOG0285|consen 227 VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHT--NPVAS---VMCQPTDPQVITGS-HD-S 299 (460)
T ss_pred hHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCC--Cccee---EEeecCCCceEEec-CC-c
Confidence 998874111 1222333334444443347788999977654443332111 23222 2232 77777544 55 6
Q ss_pred eEEEEeCCCCcEE
Q 023864 258 CIPYAYLQAFGSS 270 (276)
Q Consensus 258 ~I~vIDp~T~~v~ 270 (276)
.|-.=|...|+..
T Consensus 300 tvrlWDl~agkt~ 312 (460)
T KOG0285|consen 300 TVRLWDLRAGKTM 312 (460)
T ss_pred eEEEeeeccCcee
Confidence 7888888886655
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.11 E-value=3.4 Score=39.82 Aligned_cols=173 Identities=17% Similarity=0.182 Sum_probs=120.7
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCC--c--EEEEeecCC-CceEEEEEEeCCEEEEEE
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETG--K--VEAINQMEG-SYFGEGLTLLGEKLFQVT 166 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tg--k--v~~~~~l~~-~~FgEGit~~g~~LyqlT 166 (276)
|-.-++-+|. +.+|+---+|+|.|.+..+.|+ ++.-.+|++.+. + +...-.|+. .-|---+.+.+|.-.+.-
T Consensus 86 TtnK~haipl-~s~WVMtCA~sPSg~~VAcGGL--dN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~ 162 (343)
T KOG0286|consen 86 TTNKVHAIPL-PSSWVMTCAYSPSGNFVACGGL--DNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTG 162 (343)
T ss_pred cccceeEEec-CceeEEEEEECCCCCeEEecCc--CceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEec
Confidence 4445778888 8999999999999999988884 667777888755 2 211222443 345556667676666666
Q ss_pred eeCCEEEEEeCCCCcEEEEEecCCCCeeE--EeeCCCEEEEECC-CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEE
Q 023864 167 WLQKTGFIYDQNNLNKLEEFTHQMKDGWG--LATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEF 243 (276)
Q Consensus 167 wk~~~v~V~D~~tlk~i~~~~~~~~EGWG--LT~Dg~~L~vSDG-S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~ 243 (276)
--+.++..+|.++.+++..|.=-.++=.+ |.|..-..|+|-| ...-.++|.....-+++....+ ..+|-+.|
T Consensus 163 SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghe-----sDINsv~f 237 (343)
T KOG0286|consen 163 SGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHE-----SDINSVRF 237 (343)
T ss_pred CCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccc-----cccceEEE
Confidence 67889999999999999999622234334 4563456677776 4456778988887777766654 35666665
Q ss_pred E-CCEEEEEeCCCCCeEEEEeCCCCcEEEEE
Q 023864 244 I-KGEVWANVWQVWPCIPYAYLQAFGSSLVY 273 (276)
Q Consensus 244 i-dG~lyANvw~s~d~I~vIDp~T~~v~l~~ 273 (276)
. +|.-||.--.. ...-..|..+++.+..|
T Consensus 238 fP~G~afatGSDD-~tcRlyDlRaD~~~a~y 267 (343)
T KOG0286|consen 238 FPSGDAFATGSDD-ATCRLYDLRADQELAVY 267 (343)
T ss_pred ccCCCeeeecCCC-ceeEEEeecCCcEEeee
Confidence 5 78888887655 67778898887776554
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.48 Score=47.67 Aligned_cols=158 Identities=9% Similarity=0.074 Sum_probs=103.2
Q ss_pred CCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEE---EEEeCCEEEEEEeeCCEEEEEeCCC
Q 023864 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEG---LTLLGEKLFQVTWLQKTGFIYDQNN 179 (276)
Q Consensus 103 ~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEG---it~~g~~LyqlTwk~~~v~V~D~~t 179 (276)
...+ +..|..||+|+..++ ...-|.+||..+.-.++. +..+-++.= ++..++.+++.-=.+.++-.+|.++
T Consensus 69 ~~v~--s~~fR~DG~LlaaGD--~sG~V~vfD~k~r~iLR~--~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~ 142 (487)
T KOG0310|consen 69 DVVY--SVDFRSDGRLLAAGD--ESGHVKVFDMKSRVILRQ--LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST 142 (487)
T ss_pred ccee--EEEeecCCeEEEccC--CcCcEEEeccccHHHHHH--HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC
Confidence 4444 888888999997555 666799999766322222 111212222 2346788888888888888899888
Q ss_pred CcEEEEEecC--CCCeeEEeeCCCEEEEECC-CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCCC
Q 023864 180 LNKLEEFTHQ--MKDGWGLATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQVW 256 (276)
Q Consensus 180 lk~i~~~~~~--~~EGWGLT~Dg~~L~vSDG-S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s~ 256 (276)
-.+..++.-- .--.-.+.+-..++++|-| +..|..+|..+.. ..+---+.|.||... |-.-.|.+.|.. .-
T Consensus 143 a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~--~~v~elnhg~pVe~v--l~lpsgs~iasA-gG- 216 (487)
T KOG0310|consen 143 AYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT--SRVVELNHGCPVESV--LALPSGSLIASA-GG- 216 (487)
T ss_pred cEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC--ceeEEecCCCceeeE--EEcCCCCEEEEc-CC-
Confidence 8874454311 0011125556678999886 8899999988774 222223467788755 333466888887 44
Q ss_pred CeEEEEeCCCCcEEEE
Q 023864 257 PCIPYAYLQAFGSSLV 272 (276)
Q Consensus 257 d~I~vIDp~T~~v~l~ 272 (276)
|.|-|+|.-+|+..++
T Consensus 217 n~vkVWDl~~G~qll~ 232 (487)
T KOG0310|consen 217 NSVKVWDLTTGGQLLT 232 (487)
T ss_pred CeEEEEEecCCceehh
Confidence 7899999999887664
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.01 E-value=2.1 Score=43.19 Aligned_cols=110 Identities=16% Similarity=0.140 Sum_probs=77.7
Q ss_pred CCceEEEEecC-CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecC-CCceEEEEEE--eCCEEEEEEeeCCEEEEEeCCCC
Q 023864 105 AFTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTL--LGEKLFQVTWLQKTGFIYDQNNL 180 (276)
Q Consensus 105 aFTQGL~~~~d-g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~-~~~FgEGit~--~g~~LyqlTwk~~~v~V~D~~tl 180 (276)
+-+.=..|+++ ++++.+++ .+..+..||+.++.+ ...+. ...+--..++ .++++.+.--.++++-+||..+.
T Consensus 111 apv~~~~f~~~d~t~l~s~s--Dd~v~k~~d~s~a~v--~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~ 186 (487)
T KOG0310|consen 111 APVHVTKFSPQDNTMLVSGS--DDKVVKYWDLSTAYV--QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL 186 (487)
T ss_pred CceeEEEecccCCeEEEecC--CCceEEEEEcCCcEE--EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccC
Confidence 33344556765 57887766 677788889988876 33333 2233233333 36889999999999999999988
Q ss_pred -cEEEEEecCCCCeeE--EeeCCCEEEEECCCceEEEEcCCCC
Q 023864 181 -NKLEEFTHQMKDGWG--LATDGKVLFGSDGSSMLYQIDPQTL 220 (276)
Q Consensus 181 -k~i~~~~~~~~EGWG--LT~Dg~~L~vSDGS~~L~viDp~t~ 220 (276)
..+-+++.+ +..- +.-.+..+++|-|.+.+-+||.-++
T Consensus 187 ~~~v~elnhg--~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G 227 (487)
T KOG0310|consen 187 TSRVVELNHG--CPVESVLALPSGSLIASAGGNSVKVWDLTTG 227 (487)
T ss_pred CceeEEecCC--CceeeEEEcCCCCEEEEcCCCeEEEEEecCC
Confidence 778888765 3333 3445668999999999999998854
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.33 Score=50.56 Aligned_cols=112 Identities=21% Similarity=0.237 Sum_probs=82.0
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe---CCEEEEEEeeCCEEEEEeCCCC
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL---GEKLFQVTWLQKTGFIYDQNNL 180 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~---g~~LyqlTwk~~~v~V~D~~tl 180 (276)
.-|.|-|+-+|+|++..-+|. | ..|..- ...+-.+.||+|+.+. +..-|.+-.-++.+-++ +++
T Consensus 351 eiyPq~L~hsPNGrfV~Vcgd-G-EyiIyT---------ala~RnK~fG~~~eFvw~~dsne~avRes~~~vki~--knf 417 (794)
T KOG0276|consen 351 EIYPQTLAHSPNGRFVVVCGD-G-EYIIYT---------ALALRNKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNF 417 (794)
T ss_pred ccchHHhccCCCCcEEEEecC-c-cEEEEE---------eeehhhcccccceeEEEcCCCCeEEEEecCCceEEE--ecc
Confidence 457788999999998877772 2 222111 2234568899999885 33778887777777777 899
Q ss_pred cEEEEEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeC
Q 023864 181 NKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYK 231 (276)
Q Consensus 181 k~i~~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~ 231 (276)
|..+.+..++ -...--|..|+.-.+++.+.|.|=++++.+++|.|..+
T Consensus 418 ke~ksi~~~~---~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v~~k 465 (794)
T KOG0276|consen 418 KEHKSIRPDM---SAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEVTSK 465 (794)
T ss_pred eecccccccc---ceeeecCCceEEEEeCCeEEEEEcccceEEEEEeeccc
Confidence 9999987542 13233467777778899999999999999999999863
|
|
| >PF13970 DUF4221: Domain of unknown function (DUF4221); PDB: 3S9J_A | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.51 Score=44.55 Aligned_cols=110 Identities=15% Similarity=0.165 Sum_probs=61.8
Q ss_pred EEEEEeeC-CEEEEEeCCCCcEEEEEecC--CCCeeE----E--eeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCC
Q 023864 162 LFQVTWLQ-KTGFIYDQNNLNKLEEFTHQ--MKDGWG----L--ATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKG 232 (276)
Q Consensus 162 LyqlTwk~-~~v~V~D~~tlk~i~~~~~~--~~EGWG----L--T~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g 232 (276)
|+..+-+. +.+.+||.++++++++++++ +|.|.| + ..|..+|+.+.....|..+|. .+++++++.+....
T Consensus 58 L~f~n~~~~~~i~~~Dl~~~~l~~~i~~ekeGpngi~~~~~~~~~~Dsi~l~~~~~~~~l~~~n~-~G~~~~~~~~~~~~ 136 (333)
T PF13970_consen 58 LYFLNNYKSHSIDIYDLDSGKLVKKIPFEKEGPNGIGRPFGFFQNLDSIFLFNSYAFPKLFLFNS-QGEVLKKIDLEEED 136 (333)
T ss_dssp EEEEE-ST--EEEEEETTTTEEEEEEE-BSSSTTB-TT---EEESSSTTSEEEEGGGTEEEEE-T-T--EEEEEE---TT
T ss_pred EEEEcCCCcceEEEEECCCCceeeeeeeeeECCCCccccccceEcCCceEEEecCCcceEEEEcC-CCeEEEEEecccCc
Confidence 33456565 89999999999999999875 455543 2 335556665545688999995 48999999997632
Q ss_pred E---eee---eeeeeEE-ECCEEEEEeC----------CCCCeEEEEeCCCCcEEEE
Q 023864 233 R---EVR---NLNELEF-IKGEVWANVW----------QVWPCIPYAYLQAFGSSLV 272 (276)
Q Consensus 233 ~---pv~---~lNELE~-idG~lyANvw----------~s~d~I~vIDp~T~~v~l~ 272 (276)
. +.. ..|++.. .|+.+|...- ..+..++.||++++++..-
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~ 193 (333)
T PF13970_consen 137 LEFEPSEFPSFSNSPIFIKDNKLYFSQPYHYPFNGDFIEKIPVLAIIDLNTKKVKWL 193 (333)
T ss_dssp S-------BTTTTB--EEETTEEEEE---SSS--GGGGGGSEEEEEEETTT--EEEE
T ss_pred ccccccccccccccceEeCCCeEEEeeecccccccccccCceEEEEEECCCCeEEEE
Confidence 1 111 1234444 3667787654 2213678999999887643
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.17 Score=47.47 Aligned_cols=76 Identities=16% Similarity=0.147 Sum_probs=55.5
Q ss_pred CceeeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC---CEEEE
Q 023864 88 PSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG---EKLFQ 164 (276)
Q Consensus 88 ~~~~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g---~~Lyq 164 (276)
-+..-+++-+.-|. .+.+..|++++.+|.||+.+- ..++|.++|+.|||++.++++|.. =-..+++-| +.+|+
T Consensus 196 nr~~i~dlrk~~~~-e~~~PDGm~ID~eG~L~Va~~--ng~~V~~~dp~tGK~L~eiklPt~-qitsccFgGkn~d~~yv 271 (310)
T KOG4499|consen 196 NRKVIFDLRKSQPF-ESLEPDGMTIDTEGNLYVATF--NGGTVQKVDPTTGKILLEIKLPTP-QITSCCFGGKNLDILYV 271 (310)
T ss_pred CcceeEEeccCCCc-CCCCCCcceEccCCcEEEEEe--cCcEEEEECCCCCcEEEEEEcCCC-ceEEEEecCCCccEEEE
Confidence 33344555555565 567889999998899999865 889999999999999999999932 223445555 46666
Q ss_pred EEe
Q 023864 165 VTW 167 (276)
Q Consensus 165 lTw 167 (276)
.+-
T Consensus 272 T~a 274 (310)
T KOG4499|consen 272 TTA 274 (310)
T ss_pred Eeh
Confidence 654
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.90 E-value=3.3 Score=40.14 Aligned_cols=147 Identities=12% Similarity=0.084 Sum_probs=95.2
Q ss_pred eEEEEecCCEEEEEcCCCCCCeEEEEeCCCC-cEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCC---CCcEE
Q 023864 108 QGLLYAENDTLFESTGLYGRSSVRRVALETG-KVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQN---NLNKL 183 (276)
Q Consensus 108 QGL~~~~dg~LyeStG~yg~S~I~~iDl~tg-kv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~---tlk~i 183 (276)
.-..++. ...|..- +++-++++|..+- +....-.++-.-++-|..+.|+.+|+..|.+ -..++|.. +-.+.
T Consensus 90 ~Dv~vse-~yvyvad---~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadldd-gfLivdvsdpssP~la 164 (370)
T COG5276 90 ADVRVSE-EYVYVAD---WSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDD-GFLIVDVSDPSSPQLA 164 (370)
T ss_pred heeEecc-cEEEEEc---CCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccC-cEEEEECCCCCCceee
Confidence 4455653 4566642 7788999997653 2222233444456789999999999999944 45556654 44566
Q ss_pred EEEecCCCCeeEEeeCCCEEEEECCCceEEEEcC---CCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCCCCeEE
Q 023864 184 EEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDP---QTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQVWPCIP 260 (276)
Q Consensus 184 ~~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp---~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s~d~I~ 260 (276)
+++.++..+-|-..=-|++-|+++-.+-|.++|. ..-+.+.....+..-+.+. .-+.+.|+.++. .-++
T Consensus 165 grya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~------vsdnr~y~vvy~--egvl 236 (370)
T COG5276 165 GRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVS------VSDNRAYLVVYD--EGVL 236 (370)
T ss_pred eeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEE------ecCCeeEEEEcc--cceE
Confidence 7887764444666666999999987788888874 4455555555442222222 447888988854 4566
Q ss_pred EEeCCCC
Q 023864 261 YAYLQAF 267 (276)
Q Consensus 261 vIDp~T~ 267 (276)
.+|..+-
T Consensus 237 ivd~s~~ 243 (370)
T COG5276 237 IVDVSGP 243 (370)
T ss_pred EEecCCC
Confidence 6776553
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.13 Score=49.81 Aligned_cols=129 Identities=16% Similarity=0.162 Sum_probs=89.5
Q ss_pred CCCceeeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCc-------EEEEeecCCCceEEEEEEe
Q 023864 86 QSPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGK-------VEAINQMEGSYFGEGLTLL 158 (276)
Q Consensus 86 ~~~~~~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgk-------v~~~~~l~~~~FgEGit~~ 158 (276)
+.+-...-.+.+.-+..|..|+.|.-++|||.-+.+. ...+.++.|++...- .+..-....--+.||.|+.
T Consensus 31 qg~~~l~g~~~~~stt~p~nf~kgckWSPDGSciL~~--sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvy 108 (406)
T KOG2919|consen 31 QGPINLGGNVIAFSTTKPLNFLKGCKWSPDGSCILSL--SEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVY 108 (406)
T ss_pred ecceeccCceEEeccCCchhhhccceeCCCCceEEee--cccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEE
Confidence 3344445556666666688999999999999744442 377899999875321 1111111122355666665
Q ss_pred C-------------CEEEEEEeeCCEEEEEeCCCCcEEEEEe-------cCCCCeeEEeeCCCEEEEECCCceEEEEcC
Q 023864 159 G-------------EKLFQVTWLQKTGFIYDQNNLNKLEEFT-------HQMKDGWGLATDGKVLFGSDGSSMLYQIDP 217 (276)
Q Consensus 159 g-------------~~LyqlTwk~~~v~V~D~~tlk~i~~~~-------~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp 217 (276)
+ ..||.++-+++-+.++|.-|.+....+. +...--.++++||..||.-+ .+.|.++|.
T Consensus 109 dy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt 186 (406)
T KOG2919|consen 109 DYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDT 186 (406)
T ss_pred EEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeec
Confidence 3 3678888889999999999999988875 11345667899999999865 677888886
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.17 Score=50.65 Aligned_cols=109 Identities=15% Similarity=0.115 Sum_probs=79.5
Q ss_pred CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEE------------
Q 023864 116 DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKL------------ 183 (276)
Q Consensus 116 g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i------------ 183 (276)
.+||- ++ .+..++.||+-.|.++.++.+|..+=+.-+..-+.++|+=| .++++|+.+..++...
T Consensus 189 ~rl~T-aS--~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt-~~G~I~~~~~~~~~~~~~~v~~k~~~~~ 264 (476)
T KOG0646|consen 189 ARLYT-AS--EDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGT-EEGKIFQNLLFKLSGQSAGVNQKGRHEE 264 (476)
T ss_pred ceEEE-ec--CCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecC-CcceEEeeehhcCCcccccccccccccc
Confidence 36773 44 67889999999999999999998766555555556777665 5788888887666511
Q ss_pred -EEEec-CCCCe------eEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEe
Q 023864 184 -EEFTH-QMKDG------WGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIV 228 (276)
Q Consensus 184 -~~~~~-~~~EG------WGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V 228 (276)
.+++. -..+| -+++.||..|+..|-+.+|.++|+.+.+.+|++..
T Consensus 265 ~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~ 317 (476)
T KOG0646|consen 265 NTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQT 317 (476)
T ss_pred cceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhh
Confidence 11211 01233 45678999999999999999999999999988773
|
|
| >PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST) | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.61 Score=44.12 Aligned_cols=61 Identities=11% Similarity=-0.013 Sum_probs=46.0
Q ss_pred CceEEEEcCCCCcEEEEEEeeeC----------------------CEeeeeeeeeEEE-CCEEEEEeCCCCCeEEEEeCC
Q 023864 209 SSMLYQIDPQTLKVIRKDIVRYK----------------------GREVRNLNELEFI-KGEVWANVWQVWPCIPYAYLQ 265 (276)
Q Consensus 209 S~~L~viDp~t~~vi~~I~V~~~----------------------g~pv~~lNELE~i-dG~lyANvw~s~d~I~vIDp~ 265 (276)
.+.++.||++|++++-++.+-+. ..-.-++|-++.. +|.+.+..=+. +.|.+||++
T Consensus 95 d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~~~~~G~yLiS~R~~-~~i~~I~~~ 173 (299)
T PF14269_consen 95 DDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVDKDDDGDYLISSRNT-STIYKIDPS 173 (299)
T ss_pred cceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCCCCCCccEeeeeeecCCccEEEEeccc-CEEEEEECC
Confidence 57899999999999888776430 0112256666654 56788999899 999999999
Q ss_pred CCcEE
Q 023864 266 AFGSS 270 (276)
Q Consensus 266 T~~v~ 270 (276)
||+++
T Consensus 174 tG~I~ 178 (299)
T PF14269_consen 174 TGKII 178 (299)
T ss_pred CCcEE
Confidence 97765
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=94.72 E-value=2.6 Score=40.37 Aligned_cols=93 Identities=15% Similarity=0.152 Sum_probs=53.7
Q ss_pred CCEEEEEcCCCCCCeEEEEeCCC--CcEEEEeecCC-CceEEEEEEeCCEEEEEEee-----------CCEEEEEeCCCC
Q 023864 115 NDTLFESTGLYGRSSVRRVALET--GKVEAINQMEG-SYFGEGLTLLGEKLFQVTWL-----------QKTGFIYDQNNL 180 (276)
Q Consensus 115 dg~LyeStG~yg~S~I~~iDl~t--gkv~~~~~l~~-~~FgEGit~~g~~LyqlTwk-----------~~~v~V~D~~tl 180 (276)
+++||+..|. ....+.++|+++ ++-....+++. ...+-+++..+++||++-=. -+.+++||+.+.
T Consensus 38 ~~~iyv~gG~-~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n 116 (376)
T PRK14131 38 NNTVYVGLGS-AGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN 116 (376)
T ss_pred CCEEEEEeCC-CCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCC
Confidence 5799987664 567788999874 33333334542 22344677889999998432 256889998765
Q ss_pred cEEEEEe-cCC-CCeeEEee-CCCEEEEECC
Q 023864 181 NKLEEFT-HQM-KDGWGLAT-DGKVLFGSDG 208 (276)
Q Consensus 181 k~i~~~~-~~~-~EGWGLT~-Dg~~L~vSDG 208 (276)
+-..--+ .+. ..|-.... .++.||+-=|
T Consensus 117 ~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG 147 (376)
T PRK14131 117 SWQKLDTRSPVGLAGHVAVSLHNGKAYITGG 147 (376)
T ss_pred EEEeCCCCCCCcccceEEEEeeCCEEEEECC
Confidence 4322111 121 12323222 4567777543
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=94.67 E-value=1 Score=44.83 Aligned_cols=120 Identities=17% Similarity=0.172 Sum_probs=80.7
Q ss_pred EEec-CCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEe------------eCCEEEEEeC
Q 023864 111 LYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW------------LQKTGFIYDQ 177 (276)
Q Consensus 111 ~~~~-dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTw------------k~~~v~V~D~ 177 (276)
.+.| |+..+.|++ ++..|-+|+...+-+..... .|. .-|+-+..++-.+-| -+++++++|.
T Consensus 88 ~w~PfnD~vIASgS--eD~~v~vW~IPe~~l~~~lt---epv-v~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv 161 (472)
T KOG0303|consen 88 DWCPFNDCVIASGS--EDTKVMVWQIPENGLTRDLT---EPV-VELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNV 161 (472)
T ss_pred ccCccCCceeecCC--CCceEEEEECCCcccccCcc---cce-EEEeecceeEEEEeecccchhhHhhccCCceEEEEec
Confidence 3444 367777766 88999999876544433222 111 112323355555555 4799999999
Q ss_pred CCCcEEEEEecC-CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeee
Q 023864 178 NNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVR 236 (276)
Q Consensus 178 ~tlk~i~~~~~~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~ 236 (276)
.|.+.+-++.++ +-.-..+..||..|..+.-+.+|.++||.+.+++..-.-..+-+|..
T Consensus 162 ~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~R 221 (472)
T KOG0303|consen 162 GTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPAR 221 (472)
T ss_pred cCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcce
Confidence 999998888876 32333466799999888899999999999999987763333334433
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.65 E-value=2.7 Score=39.79 Aligned_cols=115 Identities=13% Similarity=0.220 Sum_probs=72.3
Q ss_pred eEEEEecC-CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC--CEEEEEEeeCCEEEEEeCCCCcEEE
Q 023864 108 QGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG--EKLFQVTWLQKTGFIYDQNNLNKLE 184 (276)
Q Consensus 108 QGL~~~~d-g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g--~~LyqlTwk~~~v~V~D~~tlk~i~ 184 (276)
.-+-++|. +.++. +| |++.++.+|+++|++.+..+ +...|---+...+ .+++ .--.++++-++|.+|.|..+
T Consensus 118 Nam~ldP~enSi~~-Ag--GD~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~R~~~~qil-sG~EDGtvRvWd~kt~k~v~ 192 (325)
T KOG0649|consen 118 NAMWLDPSENSILF-AG--GDGVIYQVDLEDGRIQREYR-GHTDYVHSVVGRNANGQIL-SGAEDGTVRVWDTKTQKHVS 192 (325)
T ss_pred ceeEeccCCCcEEE-ec--CCeEEEEEEecCCEEEEEEc-CCcceeeeeeecccCccee-ecCCCccEEEEeccccceeE
Confidence 45667765 44554 66 89999999999999877764 2223333334332 2332 22367999999999999888
Q ss_pred EEe-cC----CCCeeE-----EeeCCCEEEEECCCceEEEEcCCCCcEEEEEEe
Q 023864 185 EFT-HQ----MKDGWG-----LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIV 228 (276)
Q Consensus 185 ~~~-~~----~~EGWG-----LT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V 228 (276)
.+. |. ..-.|| |+.|.++|+.. |..++..++....+-+..++.
T Consensus 193 ~ie~yk~~~~lRp~~g~wigala~~edWlvCG-gGp~lslwhLrsse~t~vfpi 245 (325)
T KOG0649|consen 193 MIEPYKNPNLLRPDWGKWIGALAVNEDWLVCG-GGPKLSLWHLRSSESTCVFPI 245 (325)
T ss_pred EeccccChhhcCcccCceeEEEeccCceEEec-CCCceeEEeccCCCceEEEec
Confidence 874 22 223344 55566666553 456677777666655555544
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.45 Score=50.03 Aligned_cols=163 Identities=13% Similarity=0.055 Sum_probs=108.0
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEE---EEEEeeCCEEEEEeCCCC
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKL---FQVTWLQKTGFIYDQNNL 180 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~L---yqlTwk~~~v~V~D~~tl 180 (276)
.+-.-.++|+|.|.|..+.| -+..|.+||.+.+-.+...+=-++. .--+.+..+.. ...-.-++.+.+||.++.
T Consensus 105 e~Pvi~ma~~~~g~LlAtgg--aD~~v~VWdi~~~~~th~fkG~gGv-Vssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~ 181 (775)
T KOG0319|consen 105 EAPVITMAFDPTGTLLATGG--ADGRVKVWDIKNGYCTHSFKGHGGV-VSSLLFHPHWNRWLLASGATDGTVRVWNLNDK 181 (775)
T ss_pred CCCeEEEEEcCCCceEEecc--ccceEEEEEeeCCEEEEEecCCCce-EEEEEeCCccchhheeecCCCceEEEEEcccC
Confidence 34446899999887776555 5788999999998876665411121 11233333333 355567899999999866
Q ss_pred cE-EEEEe--cCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCCCC
Q 023864 181 NK-LEEFT--HQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQVWP 257 (276)
Q Consensus 181 k~-i~~~~--~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s~d 257 (276)
.. +.+.. +..--|.++..|+..++..-.+..+.++|..+.+..+++++.+.=..+..+-|-+=..|..+.....+ .
T Consensus 182 ~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~-g 260 (775)
T KOG0319|consen 182 RTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGS-G 260 (775)
T ss_pred chHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCC-c
Confidence 55 22221 11235778889988887766788999999999999999988763333333333111114466777788 8
Q ss_pred eEEEEeCCCCcEE
Q 023864 258 CIPYAYLQAFGSS 270 (276)
Q Consensus 258 ~I~vIDp~T~~v~ 270 (276)
.+-.+|+++++.+
T Consensus 261 ~~~~~d~es~~~~ 273 (775)
T KOG0319|consen 261 VVQYWDSESGKCV 273 (775)
T ss_pred eEEEEecccchhh
Confidence 9999999997643
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=94.58 E-value=1.1 Score=47.12 Aligned_cols=159 Identities=18% Similarity=0.197 Sum_probs=109.5
Q ss_pred EEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEee----------cC--CCceEEE-----------
Q 023864 98 EFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQ----------ME--GSYFGEG----------- 154 (276)
Q Consensus 98 ~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~----------l~--~~~FgEG----------- 154 (276)
-+-|...- .|..|+||.+++.|+- ++++||.|.++|-.-+...+ +. ..||+-|
T Consensus 447 L~GH~GPV--yg~sFsPd~rfLlScS--ED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~ 522 (707)
T KOG0263|consen 447 LYGHSGPV--YGCSFSPDRRFLLSCS--EDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST 522 (707)
T ss_pred eecCCCce--eeeeecccccceeecc--CCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence 34564344 5999999998888887 89999999998865332221 11 2355544
Q ss_pred ------------------EEEeCCEEEEEEe-eCCEEEEEeCCCCcEEEEEec--CCCCeeEEeeCCCEEEEECCCceEE
Q 023864 155 ------------------LTLLGEKLFQVTW-LQKTGFIYDQNNLNKLEEFTH--QMKDGWGLATDGKVLFGSDGSSMLY 213 (276)
Q Consensus 155 ------------------it~~g~~LyqlTw-k~~~v~V~D~~tlk~i~~~~~--~~~EGWGLT~Dg~~L~vSDGS~~L~ 213 (276)
+.++.+.-|++|- -+++|-+||..+....+-|.= ..-.-..++|+|++|--.+-+..|.
T Consensus 523 d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~ 602 (707)
T KOG0263|consen 523 DHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIK 602 (707)
T ss_pred ccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEE
Confidence 2223344455554 246788899999988888851 1124556889999998888899999
Q ss_pred EEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCCCCCeEEEEeCCC
Q 023864 214 QIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQVWPCIPYAYLQA 266 (276)
Q Consensus 214 viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~s~d~I~vIDp~T 266 (276)
++|..+.+.++...-. -..++-|++- ||.|.|.-.+. |.|-+=|...
T Consensus 603 iWDl~~~~~v~~l~~H-----t~ti~SlsFS~dg~vLasgg~D-nsV~lWD~~~ 650 (707)
T KOG0263|consen 603 IWDLANGSLVKQLKGH-----TGTIYSLSFSRDGNVLASGGAD-NSVRLWDLTK 650 (707)
T ss_pred EEEcCCCcchhhhhcc-----cCceeEEEEecCCCEEEecCCC-CeEEEEEchh
Confidence 9999998776544322 2345556664 88999999888 9988887654
|
|
| >PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats | Back alignment and domain information |
|---|
Probab=94.56 E-value=1.6 Score=44.47 Aligned_cols=136 Identities=17% Similarity=0.250 Sum_probs=89.4
Q ss_pred eeeeEEEEEEecCCCCCceEEEEecC-C-------EEEEEcCCCC--------------------CCeEEEEeCCCCcEE
Q 023864 90 IYTIQVVNEFPHDPRAFTQGLLYAEN-D-------TLFESTGLYG--------------------RSSVRRVALETGKVE 141 (276)
Q Consensus 90 ~~t~~Vv~~~Phd~~aFTQGL~~~~d-g-------~LyeStG~yg--------------------~S~I~~iDl~tgkv~ 141 (276)
...+.+|..+..++.....--++.+. + .||.....|+ ...|++++++.|++.
T Consensus 182 ~~~~~~i~s~dl~~~~~~~~~~~~g~~~~vY~S~~~LYia~~~~~~~~~~~~~~~~~~~~~~~~~~T~I~kf~~~~~~~~ 261 (521)
T PF09826_consen 182 GSNYTTITSIDLDPDKASDSTSVLGSGGNVYMSENNLYIASNRYYYEPYAMMRFEASAEPEESNESTTIYKFALDGGKIE 261 (521)
T ss_pred CCcEEEEEEEeCCCCCccceeEEEecCCEEEEeCCcEEEEEecccccccccchhccccccccCCCceEEEEEEccCCcEE
Confidence 34566788887766665555554443 3 3444444343 367999999988764
Q ss_pred --EEeecCC---CceEEEEEEeCCEEEEEEe-----------eCCEEEEEeCCCCcEEEEEecCCCCe---eEEeeCCCE
Q 023864 142 --AINQMEG---SYFGEGLTLLGEKLFQVTW-----------LQKTGFIYDQNNLNKLEEFTHQMKDG---WGLATDGKV 202 (276)
Q Consensus 142 --~~~~l~~---~~FgEGit~~g~~LyqlTw-----------k~~~v~V~D~~tlk~i~~~~~~~~EG---WGLT~Dg~~ 202 (276)
.+..+|. +-| -|..+++.|-++|- ..+.++|+| .++++++++.-= ..| ++.=-.|++
T Consensus 262 y~~sg~V~G~llnqF--smdE~~G~LRvaTT~~~~~~~~~~~s~N~lyVLD-~~L~~vG~l~~l-a~gE~IysvRF~Gd~ 337 (521)
T PF09826_consen 262 YVGSGSVPGYLLNQF--SMDEYDGYLRVATTSGNWWWDSEDTSSNNLYVLD-EDLKIVGSLEGL-APGERIYSVRFMGDR 337 (521)
T ss_pred EEEEEEECcEEcccc--cEeccCCEEEEEEecCcccccCCCCceEEEEEEC-CCCcEeEEcccc-CCCceEEEEEEeCCe
Confidence 3445553 345 45666889999883 357899999 999999999621 111 122235777
Q ss_pred EEEEC--CCceEEEEc---CCCCcEEEEEEee
Q 023864 203 LFGSD--GSSMLYQID---PQTLKVIRKDIVR 229 (276)
Q Consensus 203 L~vSD--GS~~L~viD---p~t~~vi~~I~V~ 229 (276)
.||-= ..|=|++|| |+.-++++.+++.
T Consensus 338 ~Y~VTFrqvDPLfviDLsdP~~P~vlGeLKIP 369 (521)
T PF09826_consen 338 AYLVTFRQVDPLFVIDLSDPANPKVLGELKIP 369 (521)
T ss_pred EEEEEEeecCceEEEECCCCCCCceeeEEECc
Confidence 77744 478899997 5558889988885
|
|
| >PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats | Back alignment and domain information |
|---|
Probab=94.45 E-value=5.2 Score=40.85 Aligned_cols=143 Identities=18% Similarity=0.210 Sum_probs=87.5
Q ss_pred CCCeEEEEeCCCCcEEEEee-c--CCCceEEEEEEeCCEEEEEEeeC-CEEEEEeCC---CCcEEEEEecCCCCeeE--E
Q 023864 126 GRSSVRRVALETGKVEAINQ-M--EGSYFGEGLTLLGEKLFQVTWLQ-KTGFIYDQN---NLNKLEEFTHQMKDGWG--L 196 (276)
Q Consensus 126 g~S~I~~iDl~tgkv~~~~~-l--~~~~FgEGit~~g~~LyqlTwk~-~~v~V~D~~---tlk~i~~~~~~~~EGWG--L 196 (276)
..+.|.++| ++.+++.++. | +++.| +.-+.|++.|++|.+. +-.|++|.. .-+++++++.| ||- |
T Consensus 302 s~N~lyVLD-~~L~~vG~l~~la~gE~Iy--svRF~Gd~~Y~VTFrqvDPLfviDLsdP~~P~vlGeLKIP---GfS~YL 375 (521)
T PF09826_consen 302 SSNNLYVLD-EDLKIVGSLEGLAPGERIY--SVRFMGDRAYLVTFRQVDPLFVIDLSDPANPKVLGELKIP---GFSDYL 375 (521)
T ss_pred ceEEEEEEC-CCCcEeEEccccCCCceEE--EEEEeCCeEEEEEEeecCceEEEECCCCCCCceeeEEECc---cchhce
Confidence 568899999 7777766652 3 34666 4466799999999998 999999965 57899999987 444 6
Q ss_pred eeCC-CEEEE--ECCC----------ceEEEEc---CCCCcEEEEEEeeeCCE---eeeeeeeeEEE--CCEEEEEeC--
Q 023864 197 ATDG-KVLFG--SDGS----------SMLYQID---PQTLKVIRKDIVRYKGR---EVRNLNELEFI--KGEVWANVW-- 253 (276)
Q Consensus 197 T~Dg-~~L~v--SDGS----------~~L~viD---p~t~~vi~~I~V~~~g~---pv~~lNELE~i--dG~lyANvw-- 253 (276)
.|-+ .+|+- -|.. =+|..+| |++-+++.+..+++.+. ..++---+-+. .+.+..-+.
T Consensus 376 HP~~e~~LlGiG~~~~~~~~~~~~~GlKisLFDVSD~~~P~e~~~~~iG~~~s~S~a~~dhkAfl~~~~~~ll~~Pv~~~ 455 (521)
T PF09826_consen 376 HPYDENHLLGIGKDTDEDEGTGWTQGLKISLFDVSDPANPKELDKEVIGDRGSYSEALYDHKAFLFDKEKNLLAFPVSSS 455 (521)
T ss_pred eECCCCeEEEEcccCcccccccccceeEEEEEecCCCCCccEeEEEEcCCCCccCccccCceEEEEeCCCCEEEEEEEEc
Confidence 6633 34433 2322 2677776 55567777777754321 11111111133 233332222
Q ss_pred ------CCCCeEEEEeCCCCcEEEEEEe
Q 023864 254 ------QVWPCIPYAYLQAFGSSLVYVT 275 (276)
Q Consensus 254 ------~s~d~I~vIDp~T~~v~l~~~~ 275 (276)
+. =.|..||+++|=...+.|+
T Consensus 456 ~~~~~~~g-~~v~~i~~~~g~~~~g~i~ 482 (521)
T PF09826_consen 456 YGYFNFQG-AYVFSIDPEDGFTLKGKIT 482 (521)
T ss_pred cCccccce-EEEEEEeCCCCeEEEEEEE
Confidence 33 3678888888656656554
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.44 E-value=1.9 Score=42.30 Aligned_cols=132 Identities=14% Similarity=0.106 Sum_probs=85.0
Q ss_pred CeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEecCCCCeeE---EeeCCC--E
Q 023864 128 SSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWG---LATDGK--V 202 (276)
Q Consensus 128 S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~EGWG---LT~Dg~--~ 202 (276)
..+..+++..+..+=.+..|...... -+-.+||.++-. ..+||||.++.+.+.++..-.+.+-| |++... +
T Consensus 68 r~Lkv~~~Kk~~~ICe~~fpt~IL~V--rmNr~RLvV~Le--e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~y 143 (391)
T KOG2110|consen 68 RKLKVVHFKKKTTICEIFFPTSILAV--RMNRKRLVVCLE--ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCY 143 (391)
T ss_pred ceEEEEEcccCceEEEEecCCceEEE--EEccceEEEEEc--ccEEEEecccceeehhhhccCCCccceEeeccCCCCce
Confidence 34555666666566666667664422 223588888874 44999999999999999642134444 444433 4
Q ss_pred EEE-EC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCCCCCeE-EEEeCCCCcE
Q 023864 203 LFG-SD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQVWPCI-PYAYLQAFGS 269 (276)
Q Consensus 203 L~v-SD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~s~d~I-~vIDp~T~~v 269 (276)
|-. ++ -+..|+++|..+++.+-+|.+.++. +--|.+. +|.+.|.--.. .+| -|++..+|+.
T Consensus 144 lAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~-----lAalafs~~G~llATASeK-GTVIRVf~v~~G~k 208 (391)
T KOG2110|consen 144 LAYPGSTTSGDVVLFDTINLQPVNTINAHKGP-----LAALAFSPDGTLLATASEK-GTVIRVFSVPEGQK 208 (391)
T ss_pred EEecCCCCCceEEEEEcccceeeeEEEecCCc-----eeEEEECCCCCEEEEeccC-ceEEEEEEcCCccE
Confidence 433 33 3779999999999999999987632 2223343 78888877666 544 4556666553
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.25 Score=49.25 Aligned_cols=150 Identities=11% Similarity=0.068 Sum_probs=93.4
Q ss_pred eEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe-CCEEEEEEeeCCEEEEEeCCCCcEEEEE
Q 023864 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (276)
Q Consensus 108 QGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~-g~~LyqlTwk~~~v~V~D~~tlk~i~~~ 186 (276)
-=+.|+||++-..++| -+..+..||..||......+-+...-...++.. ++.=+++--.++.+..+|.+-- .++..
T Consensus 273 ~yi~wSPDdryLlaCg--~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-~~~~W 349 (519)
T KOG0293|consen 273 SYIMWSPDDRYLLACG--FDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-ILGNW 349 (519)
T ss_pred EEEEECCCCCeEEecC--chHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc-hhhcc
Confidence 3478999988777888 566699999999987665443311112223332 2344666666777777886532 23333
Q ss_pred ec---CCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCE-EEEEeCCCCCeEEE
Q 023864 187 TH---QMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGE-VWANVWQVWPCIPY 261 (276)
Q Consensus 187 ~~---~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~-lyANvw~s~d~I~v 261 (276)
.. |.-.-.++|+||++++..+-...+..++.++...++.|.-. .|+...- .. ||+ +.+|. +. +.|-.
T Consensus 350 ~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~---~~its~~---iS~d~k~~LvnL-~~-qei~L 421 (519)
T KOG0293|consen 350 EGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEE---QPITSFS---ISKDGKLALVNL-QD-QEIHL 421 (519)
T ss_pred cccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccccc---CceeEEE---EcCCCcEEEEEc-cc-CeeEE
Confidence 22 11234468999999999888889999998876655544433 2333321 22 555 45666 66 77877
Q ss_pred EeCCCCc
Q 023864 262 AYLQAFG 268 (276)
Q Consensus 262 IDp~T~~ 268 (276)
=|.+..+
T Consensus 422 WDl~e~~ 428 (519)
T KOG0293|consen 422 WDLEENK 428 (519)
T ss_pred eecchhh
Confidence 7777533
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.20 E-value=1.6 Score=41.97 Aligned_cols=124 Identities=15% Similarity=0.157 Sum_probs=76.8
Q ss_pred ceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEE--
Q 023864 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLE-- 184 (276)
Q Consensus 107 TQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~-- 184 (276)
.+++++..-.-.+.++| -+.+|..||+.+........-++..| .+++.+++|.+-+ .+..+++||..+++.--
T Consensus 97 i~ci~~~~~~~~vIsgs--WD~~ik~wD~R~~~~~~~~d~~kkVy--~~~v~g~~LvVg~-~~r~v~iyDLRn~~~~~q~ 171 (323)
T KOG1036|consen 97 IRCIEYSYEVGCVISGS--WDKTIKFWDPRNKVVVGTFDQGKKVY--CMDVSGNRLVVGT-SDRKVLIYDLRNLDEPFQR 171 (323)
T ss_pred eEEEEeeccCCeEEEcc--cCccEEEEeccccccccccccCceEE--EEeccCCEEEEee-cCceEEEEEcccccchhhh
Confidence 46888875433555666 67899999999866666667777877 4567788887755 57889999998876422
Q ss_pred ---EEecC--------CCCeeEEeeCCCEEEEECCCceEEEEcCCC--------CcEEEEEEeeeCCEeeeeeeeeEEE
Q 023864 185 ---EFTHQ--------MKDGWGLATDGKVLFGSDGSSMLYQIDPQT--------LKVIRKDIVRYKGREVRNLNELEFI 244 (276)
Q Consensus 185 ---~~~~~--------~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t--------~~vi~~I~V~~~g~pv~~lNELE~i 244 (276)
.++|+ .+||+.+..- ||-=.+-++|+.. |+--+... ++-.-+.-.|-|++.
T Consensus 172 reS~lkyqtR~v~~~pn~eGy~~sSi-------eGRVavE~~d~s~~~~skkyaFkCHr~~~--~~~~~~yPVNai~Fh 241 (323)
T KOG1036|consen 172 RESSLKYQTRCVALVPNGEGYVVSSI-------EGRVAVEYFDDSEEAQSKKYAFKCHRLSE--KDTEIIYPVNAIAFH 241 (323)
T ss_pred ccccceeEEEEEEEecCCCceEEEee-------cceEEEEccCCchHHhhhceeEEeeeccc--CCceEEEEeceeEec
Confidence 22332 3466665543 3433445566551 21111111 233455667888876
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.51 Score=45.27 Aligned_cols=113 Identities=19% Similarity=0.134 Sum_probs=78.5
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEE--eCCEEEEEEeeCCEEEEEeCCCCc
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL--LGEKLFQVTWLQKTGFIYDQNNLN 181 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~--~g~~LyqlTwk~~~v~V~D~~tlk 181 (276)
..-+-||.+..|+....|+| -+-.|+.||.+||+.+++++.... |---+.. .|-.|.+---.++++-++|..+.+
T Consensus 90 sgAVM~l~~~~d~s~i~S~g--tDk~v~~wD~~tG~~~rk~k~h~~-~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~ 166 (338)
T KOG0265|consen 90 SGAVMELHGMRDGSHILSCG--TDKTVRGWDAETGKRIRKHKGHTS-FVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE 166 (338)
T ss_pred cceeEeeeeccCCCEEEEec--CCceEEEEecccceeeehhccccc-eeeecCccccCCeEEEecCCCceEEEEeecccc
Confidence 34447999999988777899 788999999999999999876644 3233333 345777777788999999999988
Q ss_pred EEEEE--ecC-CCCeeEEeeCCCEEEEECC-CceEEEEcCCCCcE
Q 023864 182 KLEEF--THQ-MKDGWGLATDGKVLFGSDG-SSMLYQIDPQTLKV 222 (276)
Q Consensus 182 ~i~~~--~~~-~~EGWGLT~Dg~~L~vSDG-S~~L~viDp~t~~v 222 (276)
.++++ +|+ ..-||+ -++...+ |-| .+.|-++|+.....
T Consensus 167 ~~~t~~~kyqltAv~f~--d~s~qv~-sggIdn~ikvWd~r~~d~ 208 (338)
T KOG0265|consen 167 AIKTFENKYQLTAVGFK--DTSDQVI-SGGIDNDIKVWDLRKNDG 208 (338)
T ss_pred hhhccccceeEEEEEec--cccccee-eccccCceeeeccccCcc
Confidence 88888 555 212332 2233333 334 66777777754443
|
|
| >KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.11 E-value=1.2 Score=41.60 Aligned_cols=150 Identities=16% Similarity=0.155 Sum_probs=101.3
Q ss_pred CEEEEEcCCCCCCeEEEEeC----CCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEecC--
Q 023864 116 DTLFESTGLYGRSSVRRVAL----ETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ-- 189 (276)
Q Consensus 116 g~LyeStG~yg~S~I~~iDl----~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~-- 189 (276)
++.|.. +.|....+..+.. ..|....++.+|...-|-|-.+.++.+|-.-.....+.+||.++..+.++...+
T Consensus 31 ~r~~~~-~~~~~~~l~E~~~~~~~~~~~~~~~~~lp~~~~gTg~VVynGs~yynk~~t~~ivky~l~~~~~~~~~~lp~a 109 (249)
T KOG3545|consen 31 DRIYVM-NYFDGLMLTEYTNLEDFKRGRKAEKYRLPYSWDGTGHVVYNGSLYYNKAGTRNIIKYDLETRTVAGSAALPYA 109 (249)
T ss_pred CceEEe-ccccCceEEEeccHHHhhccCcceEEeCCCCccccceEEEcceEEeeccCCcceEEEEeecceeeeeeecccc
Confidence 455555 4456666666644 345566777899888899999999999999999999999999997766654322
Q ss_pred -----CCCeeE------EeeCCCEEEE---ECCC---ceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEE-E
Q 023864 190 -----MKDGWG------LATDGKVLFG---SDGS---SMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWA-N 251 (276)
Q Consensus 190 -----~~EGWG------LT~Dg~~L~v---SDGS---~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyA-N 251 (276)
.+..|| |+-|..=||+ ++++ -.|..+||.|+++.++..+....+.+. |.=++=|-||| +
T Consensus 110 ~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~iv~skLdp~tl~~e~tW~T~~~k~~~~---~aF~iCGvLY~v~ 186 (249)
T KOG3545|consen 110 GYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTIVLSKLDPETLEVERTWNTTLPKRSAG---NAFMICGVLYVVH 186 (249)
T ss_pred ccCCCcccccCCCccccceecccceeEEecccccCCcEEeeccCHHHhheeeeeccccCCCCcC---ceEEEeeeeEEEe
Confidence 235555 5556665555 5543 345789999999999999987665544 33366677773 3
Q ss_pred eCCCCCeE--EEEeCCCCcE
Q 023864 252 VWQVWPCI--PYAYLQAFGS 269 (276)
Q Consensus 252 vw~s~d~I--~vIDp~T~~v 269 (276)
.....+.. ...|..+++.
T Consensus 187 S~~~~~~~i~yaydt~~~~~ 206 (249)
T KOG3545|consen 187 SYNCTHTQISYAYDTTTGTQ 206 (249)
T ss_pred ccccCCceEEEEEEcCCCce
Confidence 33321333 3677777654
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.00 E-value=4.1 Score=39.52 Aligned_cols=136 Identities=13% Similarity=0.091 Sum_probs=89.6
Q ss_pred CCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCC-CCcEEEEEecC-CCCeeE-Eee-
Q 023864 123 GLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQN-NLNKLEEFTHQ-MKDGWG-LAT- 198 (276)
Q Consensus 123 G~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~-tlk~i~~~~~~-~~EGWG-LT~- 198 (276)
+.|-.++|-+||-...+.+.+..+-... -++-+..++|.+++ +++++||.-. +++++..|... .|-|.= ++|
T Consensus 70 pky~pNkviIWDD~k~~~i~el~f~~~I--~~V~l~r~riVvvl--~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~ 145 (346)
T KOG2111|consen 70 PKYPPNKVIIWDDLKERCIIELSFNSEI--KAVKLRRDRIVVVL--ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPT 145 (346)
T ss_pred CCCCCceEEEEecccCcEEEEEEeccce--eeEEEcCCeEEEEe--cCeEEEEEcCCChhheeeeecccCCCceEeecCC
Confidence 3477899999996666665555554442 36677889998887 8999999954 88998888765 245411 333
Q ss_pred CCCEEEEECC--CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE----CCEEEEEeCCCCCeEEE-EeCCCCcE
Q 023864 199 DGKVLFGSDG--SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI----KGEVWANVWQVWPCIPY-AYLQAFGS 269 (276)
Q Consensus 199 Dg~~L~vSDG--S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i----dG~lyANvw~s~d~I~v-IDp~T~~v 269 (276)
-.+.+++==| ..+|.+.|.+..+.-....|.- +-+++.++ +|.+.|..-.. .++++ .|+++|+.
T Consensus 146 ~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~A------H~s~Iacv~Ln~~Gt~vATaStk-GTLIRIFdt~~g~~ 216 (346)
T KOG2111|consen 146 SNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINA------HDSDIACVALNLQGTLVATASTK-GTLIRIFDTEDGTL 216 (346)
T ss_pred CCceEEEcCCCccceEEEEEhhhcCcCCceEEEc------ccCceeEEEEcCCccEEEEeccC-cEEEEEEEcCCCcE
Confidence 3456666334 7789999977665522233322 33344444 78899888777 66555 48888653
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=93.60 E-value=2.4 Score=40.99 Aligned_cols=128 Identities=16% Similarity=0.194 Sum_probs=85.0
Q ss_pred CCCceEEEEecC---CEEEEEcCCCCCCeEEEEeCCCCcEEEE-----eecCCCceEEEEEEeCCEEEEEEeeC------
Q 023864 104 RAFTQGLLYAEN---DTLFESTGLYGRSSVRRVALETGKVEAI-----NQMEGSYFGEGLTLLGEKLFQVTWLQ------ 169 (276)
Q Consensus 104 ~aFTQGL~~~~d---g~LyeStG~yg~S~I~~iDl~tgkv~~~-----~~l~~~~FgEGit~~g~~LyqlTwk~------ 169 (276)
.+-..||++... ++||.... .+.+|.++|-.=.++.-. -.+|..|=+=+|.-.+++||+.=-+.
T Consensus 137 gavYkGLAi~~~~~~~~LYaadF--~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d 214 (336)
T TIGR03118 137 GNVYKGLAVGPTGGGDYLYAANF--RQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRND 214 (336)
T ss_pred cceeeeeEEeecCCCceEEEecc--CCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccc
Confidence 333489999843 57997644 788999998654433211 12555443347888999999875443
Q ss_pred -------CEEEEEeCCCCcEEEEEecC--CCCeeEEee--C-----CCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCC
Q 023864 170 -------KTGFIYDQNNLNKLEEFTHQ--MKDGWGLAT--D-----GKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKG 232 (276)
Q Consensus 170 -------~~v~V~D~~tlk~i~~~~~~--~~EGWGLT~--D-----g~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g 232 (276)
+-|-+||+ +.+.+++|... ....|||+. - ...|.|.| |+.+|-.+||.+++-+..+.=. +|
T Consensus 215 ~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~-~G 292 (336)
T TIGR03118 215 EVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDP-DN 292 (336)
T ss_pred cccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCC-CC
Confidence 24556774 56777888543 346777653 1 24677778 9999999999999988776543 45
Q ss_pred Eee
Q 023864 233 REV 235 (276)
Q Consensus 233 ~pv 235 (276)
.|+
T Consensus 293 ~pi 295 (336)
T TIGR03118 293 HPV 295 (336)
T ss_pred CeE
Confidence 554
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.42 E-value=8.3 Score=39.59 Aligned_cols=151 Identities=18% Similarity=0.100 Sum_probs=99.4
Q ss_pred cCCCCCceEEEEec-CCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEE-eeCCEEEEEeCC
Q 023864 101 HDPRAFTQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVT-WLQKTGFIYDQN 178 (276)
Q Consensus 101 hd~~aFTQGL~~~~-dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlT-wk~~~v~V~D~~ 178 (276)
|...-+ ||+|.. ++.|+ +|- .+-++++||..+|+-......-. ..+..+.....+.+. -.+++|.|+|..
T Consensus 248 H~g~V~--~l~~~~~~~~lv--sgS-~D~t~rvWd~~sg~C~~~l~gh~---stv~~~~~~~~~~~sgs~D~tVkVW~v~ 319 (537)
T KOG0274|consen 248 HFGGVW--GLAFPSGGDKLV--SGS-TDKTERVWDCSTGECTHSLQGHT---SSVRCLTIDPFLLVSGSRDNTVKVWDVT 319 (537)
T ss_pred CCCCce--eEEEecCCCEEE--EEe-cCCcEEeEecCCCcEEEEecCCC---ceEEEEEccCceEeeccCCceEEEEecc
Confidence 544444 888873 34555 442 46789999999999877655222 234444445555554 578999999999
Q ss_pred CCcEEEEEe-cCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECC-EEEEEeCCCC
Q 023864 179 NLNKLEEFT-HQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKG-EVWANVWQVW 256 (276)
Q Consensus 179 tlk~i~~~~-~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG-~lyANvw~s~ 256 (276)
+.+.+..+. +. ..=-.+.-++..++..--+..|-++|+.+++.++++.=. -.+|.-+ +.++ ....+--.+
T Consensus 320 n~~~l~l~~~h~-~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH--~~~V~sl----~~~~~~~~~Sgs~D- 391 (537)
T KOG0274|consen 320 NGACLNLLRGHT-GPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGH--TGRVYSL----IVDSENRLLSGSLD- 391 (537)
T ss_pred CcceEEEecccc-ccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCC--cceEEEE----EecCcceEEeeeec-
Confidence 999999887 32 111125567777777555569999999999998877652 2344443 4455 333344355
Q ss_pred CeEEEEeCCCC
Q 023864 257 PCIPYAYLQAF 267 (276)
Q Consensus 257 d~I~vIDp~T~ 267 (276)
..|-+-|..++
T Consensus 392 ~~IkvWdl~~~ 402 (537)
T KOG0274|consen 392 TTIKVWDLRTK 402 (537)
T ss_pred cceEeecCCch
Confidence 67888888886
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=93.32 E-value=5.3 Score=37.07 Aligned_cols=120 Identities=16% Similarity=0.126 Sum_probs=67.2
Q ss_pred CCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC--------CE-EEEEEee--------C-CEEEEEeCCC-------Cc
Q 023864 127 RSSVRRVALETGKVEAINQMEGSYFGEGLTLLG--------EK-LFQVTWL--------Q-KTGFIYDQNN-------LN 181 (276)
Q Consensus 127 ~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g--------~~-LyqlTwk--------~-~~v~V~D~~t-------lk 181 (276)
+|.|+.+|+.+.+++.++.+++.-.+..+.... .. +.+-|-. . |++++|+... ++
T Consensus 1 ~s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 1 ASSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp --EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred CcEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 367888888888877777777655555544432 12 2222221 1 6777777665 34
Q ss_pred EEEEEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCc-EEEEEEeeeCCEeeeeeeeeEEECCEEEEEe
Q 023864 182 KLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLK-VIRKDIVRYKGREVRNLNELEFIKGEVWANV 252 (276)
Q Consensus 182 ~i~~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~-vi~~I~V~~~g~pv~~lNELE~idG~lyANv 252 (276)
.+.+.+++ +--.+++.-++.|+++-| ++|++++...-+ +.+.-.... ++ .+..|...+++|++.-
T Consensus 81 ~i~~~~~~-g~V~ai~~~~~~lv~~~g-~~l~v~~l~~~~~l~~~~~~~~---~~-~i~sl~~~~~~I~vgD 146 (321)
T PF03178_consen 81 LIHSTEVK-GPVTAICSFNGRLVVAVG-NKLYVYDLDNSKTLLKKAFYDS---PF-YITSLSVFKNYILVGD 146 (321)
T ss_dssp EEEEEEES-S-EEEEEEETTEEEEEET-TEEEEEEEETTSSEEEEEEE-B---SS-SEEEEEEETTEEEEEE
T ss_pred EEEEEeec-CcceEhhhhCCEEEEeec-CEEEEEEccCcccchhhheecc---eE-EEEEEeccccEEEEEE
Confidence 45555665 456678887888888776 666666655555 333222221 11 4444556666665443
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.62 Score=45.92 Aligned_cols=122 Identities=15% Similarity=0.044 Sum_probs=86.2
Q ss_pred CCceEEEEecC---CEEEEEcCCCCCCeEEEEeCCCC-cEEEEeecCC-CceEEEEEEeCCEEEEEEeeCCEEEEEeCCC
Q 023864 105 AFTQGLLYAEN---DTLFESTGLYGRSSVRRVALETG-KVEAINQMEG-SYFGEGLTLLGEKLFQVTWLQKTGFIYDQNN 179 (276)
Q Consensus 105 aFTQGL~~~~d---g~LyeStG~yg~S~I~~iDl~tg-kv~~~~~l~~-~~FgEGit~~g~~LyqlTwk~~~v~V~D~~t 179 (276)
-|.+++.|.++ .++-..|. -..||.||+..+ +.+.++++.. ..-..|++..++.+|..|.+ +.++.||..+
T Consensus 203 vW~tdi~Fl~g~~~~~fat~T~---~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~-g~l~~FD~r~ 278 (412)
T KOG3881|consen 203 VWITDIRFLEGSPNYKFATITR---YHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTK-GQLAKFDLRG 278 (412)
T ss_pred eeeccceecCCCCCceEEEEec---ceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEeccc-chhheecccC
Confidence 46677877654 24555554 467999999876 4556665554 34567888888999988765 5688899999
Q ss_pred CcEEEEEecC-CCCeeEE-eeCCCEEEEECC-CceEEEEcCCCCcEEEEEEeee
Q 023864 180 LNKLEEFTHQ-MKDGWGL-ATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRY 230 (276)
Q Consensus 180 lk~i~~~~~~-~~EGWGL-T~Dg~~L~vSDG-S~~L~viDp~t~~vi~~I~V~~ 230 (276)
.+.++.+--+ .+--=++ ++++..+..|-| +..|.+.|.+|-+.+.++-|..
T Consensus 279 ~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs 332 (412)
T KOG3881|consen 279 GKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS 332 (412)
T ss_pred ceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc
Confidence 9998874211 1111133 456668888888 8889999999988887777764
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.35 Score=47.33 Aligned_cols=127 Identities=18% Similarity=0.159 Sum_probs=79.4
Q ss_pred EEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCc-----EEEEEecCCCCee
Q 023864 120 ESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLN-----KLEEFTHQMKDGW 194 (276)
Q Consensus 120 eStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk-----~i~~~~~~~~EGW 194 (276)
.|+| +...|..+|.+||-. +...--...|+.-.+.. +.|...--+++.+|+||..... ....+-++ =
T Consensus 228 fs~G--~sqqv~L~nvetg~~-qsf~sksDVfAlQf~~s-~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~----S 299 (425)
T KOG2695|consen 228 FSVG--LSQQVLLTNVETGHQ-QSFQSKSDVFALQFAGS-DNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHD----S 299 (425)
T ss_pred eccc--ccceeEEEEeecccc-cccccchhHHHHHhccc-CCeeEecccCCcEEEEEeeecccCCCcceEEEEcC----c
Confidence 3577 788888999998832 22222234554433322 4566667789999999987661 22223222 1
Q ss_pred E------EeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-------CCEEEEEeCCCCCeEEE
Q 023864 195 G------LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-------KGEVWANVWQVWPCIPY 261 (276)
Q Consensus 195 G------LT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-------dG~lyANvw~s~d~I~v 261 (276)
. |-.+++.|.+||-+.+|..+|..-.|-.+.|.-.+ .+.|+.+|. +|.|++ + .+ |+..+
T Consensus 300 svtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe-----GHvN~~a~l~~~v~~eeg~I~s-~-Gd-DcytR 371 (425)
T KOG2695|consen 300 SVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE-----GHVNLSAYLPAHVKEEEGSIFS-V-GD-DCYTR 371 (425)
T ss_pred chhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeee-----cccccccccccccccccceEEE-c-cC-eeEEE
Confidence 2 33478999999999999999976544433344333 466777765 455666 4 56 77777
Q ss_pred E
Q 023864 262 A 262 (276)
Q Consensus 262 I 262 (276)
|
T Consensus 372 i 372 (425)
T KOG2695|consen 372 I 372 (425)
T ss_pred E
Confidence 6
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.10 E-value=8.8 Score=37.05 Aligned_cols=167 Identities=13% Similarity=0.164 Sum_probs=101.5
Q ss_pred eeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecC--CCceEEEEEEeCCEEEEEEee
Q 023864 91 YTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME--GSYFGEGLTLLGEKLFQVTWL 168 (276)
Q Consensus 91 ~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~--~~~FgEGit~~g~~LyqlTwk 168 (276)
..++|.++++- .+.|..--.|.+|++|+-+. |+...-.||.++|+.+.... + ...++-.+...+.+.|+----
T Consensus 133 g~~~v~r~l~g-HtgylScC~f~dD~~ilT~S---GD~TCalWDie~g~~~~~f~-GH~gDV~slsl~p~~~ntFvSg~c 207 (343)
T KOG0286|consen 133 GNVRVSRELAG-HTGYLSCCRFLDDNHILTGS---GDMTCALWDIETGQQTQVFH-GHTGDVMSLSLSPSDGNTFVSGGC 207 (343)
T ss_pred ccceeeeeecC-ccceeEEEEEcCCCceEecC---CCceEEEEEcccceEEEEec-CCcccEEEEecCCCCCCeEEeccc
Confidence 34567778874 58888888998888998443 67899999999998766543 2 234544455446788888888
Q ss_pred CCEEEEEeCCCCcEEEEEecC--CCCeeEEeeCCCEEEE-EC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE
Q 023864 169 QKTGFIYDQNNLNKLEEFTHQ--MKDGWGLATDGKVLFG-SD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI 244 (276)
Q Consensus 169 ~~~v~V~D~~tlk~i~~~~~~--~~EGWGLT~Dg~~L~v-SD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i 244 (276)
++...++|.....-.++|+-. --.-.-+-|+|.-+-. || |+-++| |...-+ ++.+......+-.+|-+.+.
T Consensus 208 D~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRly--DlRaD~---~~a~ys~~~~~~gitSv~FS 282 (343)
T KOG0286|consen 208 DKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLY--DLRADQ---ELAVYSHDSIICGITSVAFS 282 (343)
T ss_pred ccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEE--eecCCc---EEeeeccCcccCCceeEEEc
Confidence 999999999999988888621 0012223455554433 44 555554 433332 34443322222334444444
Q ss_pred -CCE-EEEEeCCCCCeEEEEeCCCCcE
Q 023864 245 -KGE-VWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 245 -dG~-lyANvw~s~d~I~vIDp~T~~v 269 (276)
-|+ |||. +.. ..+-|=|.-.++.
T Consensus 283 ~SGRlLfag-y~d-~~c~vWDtlk~e~ 307 (343)
T KOG0286|consen 283 KSGRLLFAG-YDD-FTCNVWDTLKGER 307 (343)
T ss_pred ccccEEEee-ecC-CceeEeeccccce
Confidence 354 5553 333 4555555555443
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.75 Score=45.60 Aligned_cols=121 Identities=10% Similarity=0.034 Sum_probs=81.3
Q ss_pred CCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe------CCEEEEEEeeCCEEEEEe
Q 023864 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL------GEKLFQVTWLQKTGFIYD 176 (276)
Q Consensus 103 ~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~------g~~LyqlTwk~~~v~V~D 176 (276)
...|++-+.++|||+.+.|.- -+.+|+.||+++|+.+.+.--+..-.=.+|+.. +-+++.-.-++|.+.|+|
T Consensus 156 H~~WVlcvawsPDgk~iASG~--~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd 233 (480)
T KOG0271|consen 156 HKNWVLCVAWSPDGKKIASGS--KDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWD 233 (480)
T ss_pred CccEEEEEEECCCcchhhccc--cCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEE
Confidence 478999999999999887644 788999999999986544322222223345543 246777788999999999
Q ss_pred CCCCcEEEEEecCCCCeeE-EeeCCCEE-EEECCCceEEEEcCCCCcEEEEE
Q 023864 177 QNNLNKLEEFTHQMKDGWG-LATDGKVL-FGSDGSSMLYQIDPQTLKVIRKD 226 (276)
Q Consensus 177 ~~tlk~i~~~~~~~~EGWG-LT~Dg~~L-~vSDGS~~L~viDp~t~~vi~~I 226 (276)
....+.+..+.-- ..... +..-|+-| |-+.-+.+|-+++..+++..+.+
T Consensus 234 ~~~~~~~~~lsgH-T~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~l 284 (480)
T KOG0271|consen 234 TKLGTCVRTLSGH-TASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCREL 284 (480)
T ss_pred ccCceEEEEeccC-ccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhh
Confidence 9888777766411 11111 33445544 44446778888888886655443
|
|
| >COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.07 E-value=2.8 Score=41.59 Aligned_cols=33 Identities=18% Similarity=0.386 Sum_probs=28.3
Q ss_pred eEEEEEEecCCCCCceEEEEecCCEEEEEcCCC
Q 023864 93 IQVVNEFPHDPRAFTQGLLYAENDTLFESTGLY 125 (276)
Q Consensus 93 ~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~y 125 (276)
..|+..+|-...-||-=|.|+|||+||+++|.-
T Consensus 165 ~~i~~~lP~~~~H~g~~l~f~pDG~Lyvs~G~~ 197 (399)
T COG2133 165 KVIFRGIPKGGHHFGGRLVFGPDGKLYVTTGSN 197 (399)
T ss_pred cEEeecCCCCCCcCcccEEECCCCcEEEEeCCC
Confidence 567788886667899999999999999999954
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=93.00 E-value=3.1 Score=41.11 Aligned_cols=120 Identities=17% Similarity=0.138 Sum_probs=73.0
Q ss_pred ceEEEEec---CCEEEEEcCCCCCCeEEEEeC---CCC----cEEEEeecCCCceEEEEEEeC--CEEEEEEeeCCEEEE
Q 023864 107 TQGLLYAE---NDTLFESTGLYGRSSVRRVAL---ETG----KVEAINQMEGSYFGEGLTLLG--EKLFQVTWLQKTGFI 174 (276)
Q Consensus 107 TQGL~~~~---dg~LyeStG~yg~S~I~~iDl---~tg----kv~~~~~l~~~~FgEGit~~g--~~LyqlTwk~~~v~V 174 (276)
+.||++.. +|.+|.-.+. .+..+..|-+ .+| +++++..++.. .|||.+++ ++||+.- .+.=+..
T Consensus 158 ~yGlcly~~~~~g~~ya~v~~-k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ--~EGCVVDDe~g~LYvgE-E~~GIW~ 233 (381)
T PF02333_consen 158 PYGLCLYRSPSTGALYAFVNG-KDGRVEQYELTDDGDGKVSATLVREFKVGSQ--PEGCVVDDETGRLYVGE-EDVGIWR 233 (381)
T ss_dssp EEEEEEEE-TTT--EEEEEEE-TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS---EEEEEEETTTTEEEEEE-TTTEEEE
T ss_pred ceeeEEeecCCCCcEEEEEec-CCceEEEEEEEeCCCCcEeeEEEEEecCCCc--ceEEEEecccCCEEEec-CccEEEE
Confidence 45998853 3666643332 2344666544 344 45788888887 89999997 6999865 4456777
Q ss_pred EeCCC-----CcEEEEEec----CCCCeeEEee--CCC-EEEEEC-CCceEEEEcCCC-CcEEEEEEeee
Q 023864 175 YDQNN-----LNKLEEFTH----QMKDGWGLAT--DGK-VLFGSD-GSSMLYQIDPQT-LKVIRKDIVRY 230 (276)
Q Consensus 175 ~D~~t-----lk~i~~~~~----~~~EGWGLT~--Dg~-~L~vSD-GS~~L~viDp~t-~~vi~~I~V~~ 230 (276)
|+++- .+.+..+.- .--||.+|-+ +|+ +|++|+ |.++..++|.+. .+.+.+..|..
T Consensus 234 y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f~i~~ 303 (381)
T PF02333_consen 234 YDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSFRIGD 303 (381)
T ss_dssp EESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEEEEE-
T ss_pred EecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceEEecc
Confidence 88752 223322211 1248888854 554 799999 899999999764 56777777764
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.99 E-value=8.8 Score=36.73 Aligned_cols=152 Identities=13% Similarity=0.057 Sum_probs=97.7
Q ss_pred EEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecC-CCceEEEEEEeCCEEEEEEe-eCCEEEEEeCCCCcEEEEEe
Q 023864 110 LLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLLGEKLFQVTW-LQKTGFIYDQNNLNKLEEFT 187 (276)
Q Consensus 110 L~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~-~~~FgEGit~~g~~LyqlTw-k~~~v~V~D~~tlk~i~~~~ 187 (276)
+-|..+|-|+-|++ .++...+|=-.+|+.+.+..=- ...| -+.++.+.=+++|= -++++-+||..|.|++.+++
T Consensus 16 iKyN~eGDLlFsca--KD~~~~vw~s~nGerlGty~GHtGavW--~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k 91 (327)
T KOG0643|consen 16 IKYNREGDLLFSCA--KDSTPTVWYSLNGERLGTYDGHTGAVW--CCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK 91 (327)
T ss_pred EEecCCCcEEEEec--CCCCceEEEecCCceeeeecCCCceEE--EEEecCCcceeeeccccceeEEEEcCCCcEEEEee
Confidence 45555677777888 7888888877788876664311 1344 34444554455554 45778999999999999998
Q ss_pred cC-CCCeeEEeeCCCE-EEEEC---C-CceEEEEcCCC-------CcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeC
Q 023864 188 HQ-MKDGWGLATDGKV-LFGSD---G-SSMLYQIDPQT-------LKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVW 253 (276)
Q Consensus 188 ~~-~~EGWGLT~Dg~~-L~vSD---G-S~~L~viDp~t-------~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw 253 (276)
.+ .--+..+..+|.. |+.+| | +..|.++|... -+...+|...+ . .++-+.|- -|+-.+..-
T Consensus 92 ~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~-s----kit~a~Wg~l~~~ii~Gh 166 (327)
T KOG0643|consen 92 TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD-S----KITSALWGPLGETIIAGH 166 (327)
T ss_pred cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc-c----ceeeeeecccCCEEEEec
Confidence 77 2345567778865 56688 4 78999999773 23355565554 1 22222333 233233343
Q ss_pred CCCCeEEEEeCCCCcEEE
Q 023864 254 QVWPCIPYAYLQAFGSSL 271 (276)
Q Consensus 254 ~s~d~I~vIDp~T~~v~l 271 (276)
.+ ..|..-|..+|++.+
T Consensus 167 e~-G~is~~da~~g~~~v 183 (327)
T KOG0643|consen 167 ED-GSISIYDARTGKELV 183 (327)
T ss_pred CC-CcEEEEEcccCceee
Confidence 55 789999999986654
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.96 E-value=2.3 Score=40.62 Aligned_cols=121 Identities=20% Similarity=0.227 Sum_probs=81.4
Q ss_pred EEEEecCCEEEEEcCCCCCCeEEEEeCC--CCcEEEEee--cCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEE
Q 023864 109 GLLYAENDTLFESTGLYGRSSVRRVALE--TGKVEAINQ--MEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLE 184 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg~S~I~~iDl~--tgkv~~~~~--l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~ 184 (276)
-+.+++|+++..+.| ....|-+|.++ ...+++... -..+-|...+. .++.+|.+.-+++.+.|||...+...-
T Consensus 163 s~~~snd~~~~~~Vg--ds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s-~~~~~FAv~~Qdg~~~I~DVR~~~tpm 239 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVG--DSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFS-ENDLQFAVVFQDGTCAIYDVRNMATPM 239 (344)
T ss_pred eeEEcCCCceEEEec--CCCcceEEEeCCccceeeeeEecccCCCceeeeec-cCcceEEEEecCCcEEEEEecccccch
Confidence 678899999999999 56666666554 445555222 22344533332 257899999999999999988776442
Q ss_pred E-EecCCCCeeE------EeeCC--CEEEEECCCceEEEEcCCCCcEEEEEEeeeCC
Q 023864 185 E-FTHQMKDGWG------LATDG--KVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKG 232 (276)
Q Consensus 185 ~-~~~~~~EGWG------LT~Dg--~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g 232 (276)
. +.-..+..=| +++-| +.|+.|.+-+.++++|..+++-...|..-++-
T Consensus 240 ~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~ 296 (344)
T KOG4532|consen 240 AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDV 296 (344)
T ss_pred hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccc
Confidence 2 2211112212 44433 68999999999999999999888777765543
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.32 Score=49.58 Aligned_cols=142 Identities=12% Similarity=0.150 Sum_probs=94.6
Q ss_pred CCCCceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCC---CceEEEEEEeCCEEEEEEeeCCEEEEEeCC
Q 023864 103 PRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEG---SYFGEGLTLLGEKLFQVTWLQKTGFIYDQN 178 (276)
Q Consensus 103 ~~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~---~~FgEGit~~g~~LyqlTwk~~~v~V~D~~ 178 (276)
+..|..---+.+||+ |++ .| ..|.|.+||+++-...-+..++. .-++-.+..+- ++--.---++.+.|||..
T Consensus 464 rdnyiRSckL~pdgrtLiv-GG--eastlsiWDLAapTprikaeltssapaCyALa~spDa-kvcFsccsdGnI~vwDLh 539 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIV-GG--EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDA-KVCFSCCSDGNIAVWDLH 539 (705)
T ss_pred cccceeeeEecCCCceEEe-cc--ccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCcc-ceeeeeccCCcEEEEEcc
Confidence 567777777788876 653 45 48999999999876655555663 33444444444 444445568999999999
Q ss_pred CCcEEEEEecCCCCe---eEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCC
Q 023864 179 NLNKLEEFTHQMKDG---WGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQV 255 (276)
Q Consensus 179 tlk~i~~~~~~~~EG---WGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s 255 (276)
+-.++++|+-- ++| .-+.+||..||..-=++.|.-+|..+.+....-.... ++--|-|--..=|+.+.+.
T Consensus 540 nq~~VrqfqGh-tDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~S------QIfSLg~cP~~dWlavGMe 612 (705)
T KOG0639|consen 540 NQTLVRQFQGH-TDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSS------QIFSLGYCPTGDWLAVGME 612 (705)
T ss_pred cceeeecccCC-CCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhh------hheecccCCCccceeeecc
Confidence 99999999722 344 4488999999975449999999988876654444332 2222333333345566655
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.82 E-value=2.9 Score=44.88 Aligned_cols=138 Identities=14% Similarity=0.059 Sum_probs=99.7
Q ss_pred CCCCeEEEEeCCCCcEEEEe---ecCCCceEEEEEEeC-CEEEEEEeeCCEEEEEeCCCCcEEEEEecCC-CCeeEEeeC
Q 023864 125 YGRSSVRRVALETGKVEAIN---QMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQM-KDGWGLATD 199 (276)
Q Consensus 125 yg~S~I~~iDl~tgkv~~~~---~l~~~~FgEGit~~g-~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~-~EGWGLT~D 199 (276)
|-...|-+|+..+|-...+. +.-+.. -.|+++++ +++-+.+--+|.+-.||-+....++++..+. .-+.-....
T Consensus 467 ~S~G~Id~fNmQSGi~r~sf~~~~ah~~~-V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~ 545 (910)
T KOG1539|consen 467 YSKGTIDRFNMQSGIHRKSFGDSPAHKGE-VTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRV 545 (910)
T ss_pred ccCCeEEEEEcccCeeecccccCccccCc-eeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeeh
Confidence 45678999999999765554 122222 36889988 7899999999999999999999999988651 122222334
Q ss_pred CCEEEEECCCceEEEEcCCCCcEEEEEE-eeeCCEeeeeeeeeEEE-CCEEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 200 GKVLFGSDGSSMLYQIDPQTLKVIRKDI-VRYKGREVRNLNELEFI-KGEVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 200 g~~L~vSDGS~~L~viDp~t~~vi~~I~-V~~~g~pv~~lNELE~i-dG~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
-..+.+..+.-.|.++|..|.++++... .++ ++|.|.+. ||+=.+.--++ ..|-+-|.-|+.-+
T Consensus 546 s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~n------ritd~~FS~DgrWlisasmD-~tIr~wDlpt~~lI 611 (910)
T KOG1539|consen 546 SDLLAIALDDFSIRVVDVVTRKVVREFWGHGN------RITDMTFSPDGRWLISASMD-STIRTWDLPTGTLI 611 (910)
T ss_pred hhhhhhhcCceeEEEEEchhhhhhHHhhcccc------ceeeeEeCCCCcEEEEeecC-CcEEEEeccCccee
Confidence 4455556678899999999999998765 554 89999987 56522333355 78999999986643
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=92.74 E-value=3.3 Score=40.95 Aligned_cols=132 Identities=19% Similarity=0.207 Sum_probs=67.7
Q ss_pred eEEEEEEecCC----CCCceEEEEecCC-EEEEEcCCCCCCeEEEEeCCCCcEEEEeecC-CCceEEEEEEeCCEEEEEE
Q 023864 93 IQVVNEFPHDP----RAFTQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLLGEKLFQVT 166 (276)
Q Consensus 93 ~~Vv~~~Phd~----~aFTQGL~~~~dg-~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~-~~~FgEGit~~g~~LyqlT 166 (276)
.+|++=-|.+. --|+|=-. .+|| +|+-++..-|...+..+|+++++..+-...+ ...||+=++..++.+|- -
T Consensus 21 ~~VtrLT~~~~~~h~~YF~~~~f-t~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Y-v 98 (386)
T PF14583_consen 21 HRVTRLTPPDGHSHRLYFYQNCF-TDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYY-V 98 (386)
T ss_dssp -EEEE-S-TTS-EE---TTS--B--TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEE-E
T ss_pred ceEEEecCCCCcccceeecCCCc-CCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEE-E
Confidence 34554444432 34555433 4466 4443444458899999999999998877765 45777766666677654 2
Q ss_pred eeCCEEEEEeCCCCcEEEEEecCCCCeeE------EeeCCCEEEE-----ECC---C--------------ceEEEEcCC
Q 023864 167 WLQKTGFIYDQNNLNKLEEFTHQMKDGWG------LATDGKVLFG-----SDG---S--------------SMLYQIDPQ 218 (276)
Q Consensus 167 wk~~~v~V~D~~tlk~i~~~~~~~~EGWG------LT~Dg~~L~v-----SDG---S--------------~~L~viDp~ 218 (276)
+.++.+..+|.+|++...-+..+ ++|- +..|+..+.- +|. + .+|..||.+
T Consensus 99 ~~~~~l~~vdL~T~e~~~vy~~p--~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~ 176 (386)
T PF14583_consen 99 KNGRSLRRVDLDTLEERVVYEVP--DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLK 176 (386)
T ss_dssp ETTTEEEEEETTT--EEEEEE----TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETT
T ss_pred ECCCeEEEEECCcCcEEEEEECC--cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECC
Confidence 34679999999999875544443 4443 4456555422 111 1 278999999
Q ss_pred CCcEEEEEEe
Q 023864 219 TLKVIRKDIV 228 (276)
Q Consensus 219 t~~vi~~I~V 228 (276)
|++...-...
T Consensus 177 tG~~~~v~~~ 186 (386)
T PF14583_consen 177 TGERKVVFED 186 (386)
T ss_dssp T--EEEEEEE
T ss_pred CCceeEEEec
Confidence 9876544443
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.67 E-value=1.4 Score=45.03 Aligned_cols=118 Identities=15% Similarity=0.118 Sum_probs=85.6
Q ss_pred EecCCCCCceEEEEecCC-EEEEEcCCCCCCeEEEEeCCCCcEEE----EeecCCCceEEEEEEeCCEEEEEEeeCCEEE
Q 023864 99 FPHDPRAFTQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEA----INQMEGSYFGEGLTLLGEKLFQVTWLQKTGF 173 (276)
Q Consensus 99 ~Phd~~aFTQGL~~~~dg-~LyeStG~yg~S~I~~iDl~tgkv~~----~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~ 173 (276)
+-||...-+.-|-|++-. .|+.+++ .+..|+.||......+. .+.-|.+ |.-+...|..|++-.-.+.++.
T Consensus 159 f~~~sgqsvRll~ys~skr~lL~~as--d~G~VtlwDv~g~sp~~~~~~~HsAP~~--gicfspsne~l~vsVG~Dkki~ 234 (673)
T KOG4378|consen 159 FTIDSGQSVRLLRYSPSKRFLLSIAS--DKGAVTLWDVQGMSPIFHASEAHSAPCR--GICFSPSNEALLVSVGYDKKIN 234 (673)
T ss_pred eecCCCCeEEEeecccccceeeEeec--cCCeEEEEeccCCCcccchhhhccCCcC--cceecCCccceEEEecccceEE
Confidence 444445555567788764 4777777 78889999997654332 2233433 3334446889999999999999
Q ss_pred EEeCCCCcEEEEEecCCC-CeeEEeeCCCEEEEECCCceEEEEcCCCC
Q 023864 174 IYDQNNLNKLEEFTHQMK-DGWGLATDGKVLFGSDGSSMLYQIDPQTL 220 (276)
Q Consensus 174 V~D~~tlk~i~~~~~~~~-EGWGLT~Dg~~L~vSDGS~~L~viDp~t~ 220 (276)
+||....+...++.|..| --.++.++|.+|.+.+-..+|++.|....
T Consensus 235 ~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 235 IYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRST 282 (673)
T ss_pred EeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccC
Confidence 999999998888877522 44568889999999887889999996544
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=92.64 E-value=1.2 Score=43.96 Aligned_cols=148 Identities=11% Similarity=0.053 Sum_probs=93.4
Q ss_pred ceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecC-CCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEE-
Q 023864 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLE- 184 (276)
Q Consensus 107 TQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~-~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~- 184 (276)
+-.|.|+ .++++|.- .+|.|++||.+||+.+++.-=- +. --++-+.++ ..+.--+++.+-|+|.++-..+.
T Consensus 240 VLCLqyd--~rviisGS--SDsTvrvWDv~tge~l~tlihHcea--VLhlrf~ng-~mvtcSkDrsiaVWdm~sps~it~ 312 (499)
T KOG0281|consen 240 VLCLQYD--ERVIVSGS--SDSTVRVWDVNTGEPLNTLIHHCEA--VLHLRFSNG-YMVTCSKDRSIAVWDMASPTDITL 312 (499)
T ss_pred EEeeecc--ceEEEecC--CCceEEEEeccCCchhhHHhhhcce--eEEEEEeCC-EEEEecCCceeEEEeccCchHHHH
Confidence 3466675 56777644 7899999999999876543100 11 113333333 23344588999999987654221
Q ss_pred -EEecCCCCeeE-EeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCCCCeEEEE
Q 023864 185 -EFTHQMKDGWG-LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQVWPCIPYA 262 (276)
Q Consensus 185 -~~~~~~~EGWG-LT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s~d~I~vI 262 (276)
.+-.+...... +..|.+.++-..|+.+|.++|..|.+-++++.-..-|.+.- ..+|++.|.=-.+ |.|-.-
T Consensus 313 rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIACl------QYr~rlvVSGSSD-ntIRlw 385 (499)
T KOG0281|consen 313 RRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACL------QYRDRLVVSGSSD-NTIRLW 385 (499)
T ss_pred HHHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcccccceeh------hccCeEEEecCCC-ceEEEE
Confidence 11111111112 45677755555599999999999999999887766555543 3467777766455 899888
Q ss_pred eCCCCc
Q 023864 263 YLQAFG 268 (276)
Q Consensus 263 Dp~T~~ 268 (276)
|.+.|.
T Consensus 386 di~~G~ 391 (499)
T KOG0281|consen 386 DIECGA 391 (499)
T ss_pred eccccH
Confidence 988864
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=92.61 E-value=3.3 Score=41.31 Aligned_cols=105 Identities=16% Similarity=0.172 Sum_probs=73.9
Q ss_pred EEecC-CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEecC
Q 023864 111 LYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ 189 (276)
Q Consensus 111 ~~~~d-g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~ 189 (276)
+++|- ..++.|+| +++.|..||.+||+.+-+..-|...+..-.. .++.+++.|-+++++-|||+.+.+++.+-. .
T Consensus 138 ~wHPtA~NVLlsag--~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn-~dGs~l~TtckDKkvRv~dpr~~~~v~e~~-~ 213 (472)
T KOG0303|consen 138 QWHPTAPNVLLSAG--SDNTVSIWNVGTGEALITLDHPDMVYSMSFN-RDGSLLCTTCKDKKVRVIDPRRGTVVSEGV-A 213 (472)
T ss_pred eecccchhhHhhcc--CCceEEEEeccCCceeeecCCCCeEEEEEec-cCCceeeeecccceeEEEcCCCCcEeeecc-c
Confidence 45654 23455788 8999999999999977777766665533333 356888999999999999999999988762 1
Q ss_pred CCCeeE-----EeeCCCEEEEECC-----CceEEEEcCCCCcE
Q 023864 190 MKDGWG-----LATDGKVLFGSDG-----SSMLYQIDPQTLKV 222 (276)
Q Consensus 190 ~~EGWG-----LT~Dg~~L~vSDG-----S~~L~viDp~t~~v 222 (276)
-||-. +-.+|+ ++|-| ..++..+||+++++
T Consensus 214 -heG~k~~Raifl~~g~--i~tTGfsr~seRq~aLwdp~nl~e 253 (472)
T KOG0303|consen 214 -HEGAKPARAIFLASGK--IFTTGFSRMSERQIALWDPNNLEE 253 (472)
T ss_pred -ccCCCcceeEEeccCc--eeeeccccccccceeccCcccccC
Confidence 24433 223455 34444 34778889998865
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=92.57 E-value=4.5 Score=40.83 Aligned_cols=148 Identities=14% Similarity=0.123 Sum_probs=76.6
Q ss_pred cCCEEEEEc-----CCCCCCeEEEEeCCCCcEEEEeecC--CCceEEEEEEeC--CEEEEEEe-----------------
Q 023864 114 ENDTLFEST-----GLYGRSSVRRVALETGKVEAINQME--GSYFGEGLTLLG--EKLFQVTW----------------- 167 (276)
Q Consensus 114 ~dg~LyeSt-----G~yg~S~I~~iDl~tgkv~~~~~l~--~~~FgEGit~~g--~~LyqlTw----------------- 167 (276)
++|.++.|+ | .|...+..+|-+|.++..+-+.+ ...||=.+-..- +.+.---|
T Consensus 139 p~G~imIS~lGd~~G-~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~ 217 (461)
T PF05694_consen 139 PDGRIMISALGDADG-NGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEA 217 (461)
T ss_dssp SS--EEEEEEEETTS--S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHH
T ss_pred CCccEEEEeccCCCC-CCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhc
Confidence 456666553 3 46778999999999998877664 456765555543 45555555
Q ss_pred --eCCEEEEEeCCCCcEEEEEecCCCCeeE-E----e--eCCCEEEEEC-CCceEEEEcC-CCC--cEEEEEEeeeCCEe
Q 023864 168 --LQKTGFIYDQNNLNKLEEFTHQMKDGWG-L----A--TDGKVLFGSD-GSSMLYQIDP-QTL--KVIRKDIVRYKGRE 234 (276)
Q Consensus 168 --k~~~v~V~D~~tlk~i~~~~~~~~EGWG-L----T--~Dg~~L~vSD-GS~~L~viDp-~t~--~vi~~I~V~~~g~p 234 (276)
..+++.++|..+.+.++++..+ .||-. | . |+..+-|+.- -+++|+.+=. +.. +..+-|.|.. .+
T Consensus 218 ~~yG~~l~vWD~~~r~~~Q~idLg-~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~--~~ 294 (461)
T PF05694_consen 218 GKYGHSLHVWDWSTRKLLQTIDLG-EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPA--KK 294 (461)
T ss_dssp H-S--EEEEEETTTTEEEEEEES--TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE----EE
T ss_pred ccccCeEEEEECCCCcEeeEEecC-CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCC--cc
Confidence 4689999999999999999987 46633 2 2 3456777765 5777766643 344 4445566653 22
Q ss_pred ee--eeeee--------------EE--ECCEEEEEeCCCCCeEEEEeCCC
Q 023864 235 VR--NLNEL--------------EF--IKGEVWANVWQVWPCIPYAYLQA 266 (276)
Q Consensus 235 v~--~lNEL--------------E~--idG~lyANvw~s~d~I~vIDp~T 266 (276)
+. .+-|| -. .|.+||+|+|.. ..|-.-|-..
T Consensus 295 v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~-GdvrqYDISD 343 (461)
T PF05694_consen 295 VEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLH-GDVRQYDISD 343 (461)
T ss_dssp --SS---GGGGGG-EE------EEE-TTS-EEEEEETTT-TEEEEEE-SS
T ss_pred cCcccccccccccccCCCceEeEEEccCCCEEEEEcccC-CcEEEEecCC
Confidence 11 11122 11 256799999999 9999888543
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=92.55 E-value=3.4 Score=41.62 Aligned_cols=74 Identities=18% Similarity=0.258 Sum_probs=44.5
Q ss_pred CCceeeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCce------EEEEEEeCC
Q 023864 87 SPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYF------GEGLTLLGE 160 (276)
Q Consensus 87 ~~~~~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~F------gEGit~~g~ 160 (276)
.+.-++.+++.+ .=..++ +|+|.|||+||++- .+..+|++++..+++......++.... --||+++.+
T Consensus 16 ~p~~f~~~~va~--GL~~Pw--~maflPDG~llVtE--R~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 16 ASENFDKKVLLS--GLNKPW--ALLWGPDNQLWVTE--RATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred CCCCcEEEEEEC--CCCCce--EEEEcCCCeEEEEE--ecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCC
Confidence 344456666654 113455 99999999998762 134689999987775433333332111 136777643
Q ss_pred --------EEEEEE
Q 023864 161 --------KLFQVT 166 (276)
Q Consensus 161 --------~LyqlT 166 (276)
.||+..
T Consensus 90 F~~~~~n~~lYvsy 103 (454)
T TIGR03606 90 FMQEKGNPYVYISY 103 (454)
T ss_pred ccccCCCcEEEEEE
Confidence 588864
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.50 E-value=1.4 Score=43.86 Aligned_cols=122 Identities=11% Similarity=0.087 Sum_probs=81.8
Q ss_pred ecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecC---CCceEEEEEEeC-CEEEEEEeeCCEEEEE
Q 023864 100 PHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME---GSYFGEGLTLLG-EKLFQVTWLQKTGFIY 175 (276)
Q Consensus 100 Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~---~~~FgEGit~~g-~~LyqlTwk~~~v~V~ 175 (276)
-|+..-| ++.|.+||-|..++| -++.=++||+.||+-+-. |. +..| ++++.. +.....-=.++++-|+
T Consensus 301 GHs~~v~--~iaf~~DGSL~~tGG--lD~~~RvWDlRtgr~im~--L~gH~k~I~--~V~fsPNGy~lATgs~Dnt~kVW 372 (459)
T KOG0272|consen 301 GHSKGVF--SIAFQPDGSLAATGG--LDSLGRVWDLRTGRCIMF--LAGHIKEIL--SVAFSPNGYHLATGSSDNTCKVW 372 (459)
T ss_pred ccccccc--eeEecCCCceeeccC--ccchhheeecccCcEEEE--eccccccee--eEeECCCceEEeecCCCCcEEEe
Confidence 4555566 999999999988766 577778999999975432 22 2344 344432 3333333467999999
Q ss_pred eCCCCcEEEEEecCC--CCeeEEeeCCCEEEEECC-CceEEEEcCCCCcEEEEEEee
Q 023864 176 DQNNLNKLEEFTHQM--KDGWGLATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVR 229 (276)
Q Consensus 176 D~~tlk~i~~~~~~~--~EGWGLT~Dg~~L~vSDG-S~~L~viDp~t~~vi~~I~V~ 229 (276)
|..-.+.+-++|--. --..-+.++.....+|-+ ++++-++.+.+++.++.+.=.
T Consensus 373 DLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGH 429 (459)
T KOG0272|consen 373 DLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGH 429 (459)
T ss_pred eecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCC
Confidence 999888888876221 112224455566666664 889999999999887766543
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=92.48 E-value=8.7 Score=35.65 Aligned_cols=118 Identities=10% Similarity=0.194 Sum_probs=81.6
Q ss_pred eeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCc-EEEEeecCCCceEEEEEEeCCEEEEEEeeC
Q 023864 91 YTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGK-VEAINQMEGSYFGEGLTLLGEKLFQVTWLQ 169 (276)
Q Consensus 91 ~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgk-v~~~~~l~~~~FgEGit~~g~~LyqlTwk~ 169 (276)
...+.+.+.+++ .+ +..+.-. +|+|..+.| +.|..|+++..+ +.....++...+...++..++.+++.+-..
T Consensus 77 ~~l~~i~~~~~~-g~-V~ai~~~-~~~lv~~~g----~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~ 149 (321)
T PF03178_consen 77 FKLKLIHSTEVK-GP-VTAICSF-NGRLVVAVG----NKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMK 149 (321)
T ss_dssp -EEEEEEEEEES-S--EEEEEEE-TTEEEEEET----TEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSS
T ss_pred eEEEEEEEEeec-Cc-ceEhhhh-CCEEEEeec----CEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEccc
Confidence 467788888773 33 3577766 578888877 799999999888 888888888889999999999999999877
Q ss_pred CEEEE-EeCC--CCcEEEEEecCCCCeeE--EeeCCCEEEEECCCceEEEEc
Q 023864 170 KTGFI-YDQN--NLNKLEEFTHQMKDGWG--LATDGKVLFGSDGSSMLYQID 216 (276)
Q Consensus 170 ~~v~V-~D~~--tlk~i~~~~~~~~EGWG--LT~Dg~~L~vSDGS~~L~viD 216 (276)
+..+. ||.. ++.++++=..+ ..... +-.|++.++++|-...|+++.
T Consensus 150 sv~~~~~~~~~~~l~~va~d~~~-~~v~~~~~l~d~~~~i~~D~~gnl~~l~ 200 (321)
T PF03178_consen 150 SVSLLRYDEENNKLILVARDYQP-RWVTAAEFLVDEDTIIVGDKDGNLFVLR 200 (321)
T ss_dssp SEEEEEEETTTE-EEEEEEESS--BEEEEEEEE-SSSEEEEEETTSEEEEEE
T ss_pred CEEEEEEEccCCEEEEEEecCCC-ccEEEEEEecCCcEEEEEcCCCeEEEEE
Confidence 66554 7863 35555542222 11122 222667899999777776654
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.25 E-value=2.7 Score=44.52 Aligned_cols=156 Identities=15% Similarity=0.175 Sum_probs=96.2
Q ss_pred eeEEEEEEecCCCCCceEEEEecC-----CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC-CceEEEEEEeC-CEEEE
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAEN-----DTLFESTGLYGRSSVRRVALETGKVEAINQMEG-SYFGEGLTLLG-EKLFQ 164 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~d-----g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~-~~FgEGit~~g-~~Lyq 164 (276)
+++-+.+.|.. .. .+|..+.++ |.++...| |++.++.||.++++...+..-++ .-+--++.... .++..
T Consensus 223 ~~~~l~~lp~y-e~-~E~vv~l~~~~~~~~~~~~TaG--~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~ 298 (775)
T KOG0319|consen 223 QYKKLKTLPLY-ES-LESVVRLREELGGKGEYIITAG--GSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLL 298 (775)
T ss_pred hhhhhheechh-hh-eeeEEEechhcCCcceEEEEec--CCceEEEEecccchhhhhhccCCchhhhcceeccccCceEE
Confidence 44555666652 22 256666655 45667788 89999999999999877765543 11222333333 45555
Q ss_pred EEeeCCEEEEEeCCCCcEEEEEe-cCCCCeeEEe---eCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeee
Q 023864 165 VTWLQKTGFIYDQNNLNKLEEFT-HQMKDGWGLA---TDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNE 240 (276)
Q Consensus 165 lTwk~~~v~V~D~~tlk~i~~~~-~~~~EGWGLT---~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNE 240 (276)
+| -++.+|+||.+++++.+.|- |. .|=.-+. ++..+|.|.--+..|.++|..|..-. |..+ +. .-++-
T Consensus 299 vt-aeQnl~l~d~~~l~i~k~ivG~n-dEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~--ii~G---H~-e~vlS 370 (775)
T KOG0319|consen 299 VT-AEQNLFLYDEDELTIVKQIVGYN-DEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ--IIPG---HT-EAVLS 370 (775)
T ss_pred EE-ccceEEEEEccccEEehhhcCCc-hhheeeeecCCccceEEEEeCCCceEEEecCCCceE--EEeC---ch-hheee
Confidence 55 47889999999999999884 22 2333444 44478888555777877788876543 3332 10 12333
Q ss_pred eE-EECCEEEEEeCCCCCeEE
Q 023864 241 LE-FIKGEVWANVWQVWPCIP 260 (276)
Q Consensus 241 LE-~idG~lyANvw~s~d~I~ 260 (276)
|. +..|.+.|.+-.+ +.|.
T Consensus 371 L~~~~~g~llat~sKD-~svi 390 (775)
T KOG0319|consen 371 LDVWSSGDLLATGSKD-KSVI 390 (775)
T ss_pred eeecccCcEEEEecCC-ceEE
Confidence 44 5677677777555 5443
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.13 E-value=5 Score=39.77 Aligned_cols=135 Identities=13% Similarity=0.133 Sum_probs=92.0
Q ss_pred CCeEEEEeCCCCcEEEEe-ecCCC-------ceEEEEEEeC---CEEEEEEeeCCEEEEEeCC-CCcEEEEEecC--CCC
Q 023864 127 RSSVRRVALETGKVEAIN-QMEGS-------YFGEGLTLLG---EKLFQVTWLQKTGFIYDQN-NLNKLEEFTHQ--MKD 192 (276)
Q Consensus 127 ~S~I~~iDl~tgkv~~~~-~l~~~-------~FgEGit~~g---~~LyqlTwk~~~v~V~D~~-tlk~i~~~~~~--~~E 192 (276)
.+-+-.||+++.+.+-+. .+|+. .+-.++.+.. ..-|+.--+-+.+-+||+. ..++..+|++. .--
T Consensus 172 ~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is 251 (412)
T KOG3881|consen 172 INELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPIS 251 (412)
T ss_pred ccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcce
Confidence 478899999998655444 23322 2334555543 3555555678999999986 45688999864 114
Q ss_pred eeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECC-EEEEEeCCCCCeEEEEeCCC
Q 023864 193 GWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKG-EVWANVWQVWPCIPYAYLQA 266 (276)
Q Consensus 193 GWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG-~lyANvw~s~d~I~vIDp~T 266 (276)
..||+++|..+|+.|-...|..+|..+.++... +.+|.. ..+--+.+..+ .+.|.+..+ -.+-+-|.+|
T Consensus 252 ~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~---~~kg~t-Gsirsih~hp~~~~las~GLD-RyvRIhD~kt 321 (412)
T KOG3881|consen 252 STGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC---GLKGIT-GSIRSIHCHPTHPVLASCGLD-RYVRIHDIKT 321 (412)
T ss_pred eeeecCCCcEEEEecccchhheecccCceeecc---ccCCcc-CCcceEEEcCCCceEEeeccc-eeEEEeeccc
Confidence 567999999999999999999999998877543 222210 11222335555 688888777 7777789888
|
|
| >PF13970 DUF4221: Domain of unknown function (DUF4221); PDB: 3S9J_A | Back alignment and domain information |
|---|
Probab=91.96 E-value=6.3 Score=37.17 Aligned_cols=135 Identities=18% Similarity=0.096 Sum_probs=72.2
Q ss_pred CCeEEEEeCCCCcEEEEeecCC-------CceEEEEEEeCCEEEEEE-eeCCEEEEEeCCCCcEEEEEecC--CCCeeEE
Q 023864 127 RSSVRRVALETGKVEAINQMEG-------SYFGEGLTLLGEKLFQVT-WLQKTGFIYDQNNLNKLEEFTHQ--MKDGWGL 196 (276)
Q Consensus 127 ~S~I~~iDl~tgkv~~~~~l~~-------~~FgEGit~~g~~LyqlT-wk~~~v~V~D~~tlk~i~~~~~~--~~EGWGL 196 (276)
...|.+||++++++++++++.. +++ |+....|.+|+.+ +....++++| ...+++++++.. ..++|..
T Consensus 66 ~~~i~~~Dl~~~~l~~~i~~ekeGpngi~~~~--~~~~~~Dsi~l~~~~~~~~l~~~n-~~G~~~~~~~~~~~~~~~~~~ 142 (333)
T PF13970_consen 66 SHSIDIYDLDSGKLVKKIPFEKEGPNGIGRPF--GFFQNLDSIFLFNSYAFPKLFLFN-SQGEVLKKIDLEEEDLEFEPS 142 (333)
T ss_dssp --EEEEEETTTTEEEEEEE-BSSSTTB-TT-----EEESSSTTSEEEEGGGTEEEEE--TT--EEEEEE---TTS-----
T ss_pred cceEEEEECCCCceeeeeeeeeECCCCccccc--cceEcCCceEEEecCCcceEEEEc-CCCeEEEEEecccCccccccc
Confidence 4799999999999999997663 333 5555456666666 5778899999 566777777643 1233321
Q ss_pred -----------eeCCCEEEEE---------C---CCceEEEEcCCCCcEEEEEEeee--CCEe--ee--eeeeeE----E
Q 023864 197 -----------ATDGKVLFGS---------D---GSSMLYQIDPQTLKVIRKDIVRY--KGRE--VR--NLNELE----F 243 (276)
Q Consensus 197 -----------T~Dg~~L~vS---------D---GS~~L~viDp~t~~vi~~I~V~~--~g~p--v~--~lNELE----~ 243 (276)
..|+ .+|.+ + ....+.++|+++.++. .+.+.. .-.. +. .....+ +
T Consensus 143 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (333)
T PF13970_consen 143 EFPSFSNSPIFIKDN-KLYFSQPYHYPFNGDFIEKIPVLAIIDLNTKKVK-WLPLPYPDKYQKYNINWDGGMFPSYSYNY 220 (333)
T ss_dssp --BTTTTB--EEETT-EEEEE---SSS--GGGGGGSEEEEEEETTT--EE-EEEEE--S------SSEEE---EEEEEET
T ss_pred ccccccccceEeCCC-eEEEeeecccccccccccCceEEEEEECCCCeEE-EEeCCChHHhhhhccccCcceecceeEEE
Confidence 1233 33442 1 1336789999998774 455421 0000 00 000111 1
Q ss_pred -ECCEEEEEeCCCCCeEEEEeCCCCc
Q 023864 244 -IKGEVWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 244 -idG~lyANvw~s~d~I~vIDp~T~~ 268 (276)
.+|+++.+.+.+ +.|.+-| .++.
T Consensus 221 ~~~~~~i~s~~~~-~~iyv~d-~~~~ 244 (333)
T PF13970_consen 221 FKGGKIIISFPAD-SEIYVYD-SNDS 244 (333)
T ss_dssp -TTTEEEEEETT--SEEEEES-SSS-
T ss_pred eeCCEEEEecCCC-ceEEEEC-CCCe
Confidence 378999999999 9999988 6544
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.91 E-value=4.4 Score=39.60 Aligned_cols=143 Identities=8% Similarity=-0.027 Sum_probs=82.4
Q ss_pred ceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCc------EEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCC
Q 023864 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGK------VEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNL 180 (276)
Q Consensus 107 TQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgk------v~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tl 180 (276)
+-|+.|+.||+-+.+.- ++-.|+.||++.-. +.+.++++ ++=..-++.+-.-+.+.--.++++.+|-....
T Consensus 89 vt~~~FsSdGK~lat~~--~Dr~Ir~w~~~DF~~~eHr~~R~nve~d-hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~ 165 (420)
T KOG2096|consen 89 VTDVAFSSDGKKLATIS--GDRSIRLWDVRDFENKEHRCIRQNVEYD-HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKK 165 (420)
T ss_pred eeeeEEcCCCceeEEEe--CCceEEEEecchhhhhhhhHhhccccCC-CceEEEECCCcceEEEEEccCCEEEEEEeeec
Confidence 46999999998777666 88999999987532 22233344 33222223222333333346666666653221
Q ss_pred c-----------------EEEEEecCCCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeE
Q 023864 181 N-----------------KLEEFTHQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELE 242 (276)
Q Consensus 181 k-----------------~i~~~~~~~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE 242 (276)
+ ...+.+ ---+|++.. ...+||- -..+|-.+|.. ++++..|.... .-|-+.
T Consensus 166 ~dG~~~~~~v~~D~~~f~~kh~v~---~i~iGiA~~-~k~imsas~dt~i~lw~lk-Gq~L~~idtnq------~~n~~a 234 (420)
T KOG2096|consen 166 TDGSGSHHFVHIDNLEFERKHQVD---IINIGIAGN-AKYIMSASLDTKICLWDLK-GQLLQSIDTNQ------SSNYDA 234 (420)
T ss_pred ccCCCCcccccccccccchhcccc---eEEEeecCC-ceEEEEecCCCcEEEEecC-Cceeeeecccc------ccccce
Confidence 1 111111 123566644 4455655 57789999988 99999998864 111111
Q ss_pred E--ECCEEEEEeCCCCCeEEEEeC
Q 023864 243 F--IKGEVWANVWQVWPCIPYAYL 264 (276)
Q Consensus 243 ~--idG~lyANvw~s~d~I~vIDp 264 (276)
- -||+..|....+ ..|-|-.|
T Consensus 235 avSP~GRFia~~gFT-pDVkVwE~ 257 (420)
T KOG2096|consen 235 AVSPDGRFIAVSGFT-PDVKVWEP 257 (420)
T ss_pred eeCCCCcEEEEecCC-CCceEEEE
Confidence 1 277777777777 66655443
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=91.91 E-value=14 Score=36.51 Aligned_cols=159 Identities=11% Similarity=0.064 Sum_probs=97.0
Q ss_pred ecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe-CCEEEEEEeeCCEEEEEeCC
Q 023864 100 PHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQN 178 (276)
Q Consensus 100 Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~-g~~LyqlTwk~~~v~V~D~~ 178 (276)
.|-...| -+..+|+.+|..+.| |++.-..||..+|....... +-.---.-+.+. ++.+...-=.+++++|++..
T Consensus 62 ~H~~svF--avsl~P~~~l~aTGG--gDD~AflW~~~~ge~~~elt-gHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s 136 (399)
T KOG0296|consen 62 KHTDSVF--AVSLHPNNNLVATGG--GDDLAFLWDISTGEFAGELT-GHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS 136 (399)
T ss_pred hcCCceE--EEEeCCCCceEEecC--CCceEEEEEccCCcceeEec-CCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence 5766777 666688778888766 89999999999998654432 211111222232 34444444589999999999
Q ss_pred CCcEEEEEecCCCCe--eEEe-eCCCEEEEECCCceEEEEcCCCCcEEEEEEeee-CCEeeeeeeeeEEE-CCEEEEEeC
Q 023864 179 NLNKLEEFTHQMKDG--WGLA-TDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY-KGREVRNLNELEFI-KGEVWANVW 253 (276)
Q Consensus 179 tlk~i~~~~~~~~EG--WGLT-~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~-~g~pv~~lNELE~i-dG~lyANvw 253 (276)
+.....++.++. ++ |=-. |-+..|..-+-+..|+.+..... +..+|-. ++.|+. ==|++ ||+--+..+
T Consensus 137 tg~~~~~~~~e~-~dieWl~WHp~a~illAG~~DGsvWmw~ip~~---~~~kv~~Gh~~~ct---~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 137 TGGEQWKLDQEV-EDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ---ALCKVMSGHNSPCT---CGEFIPDGKRILTGY 209 (399)
T ss_pred cCceEEEeeccc-CceEEEEecccccEEEeecCCCcEEEEECCCc---ceeeEecCCCCCcc---cccccCCCceEEEEe
Confidence 999988887542 22 2222 34556666444556666665443 2333432 122221 11122 677555555
Q ss_pred CCCCeEEEEeCCCCcEEE
Q 023864 254 QVWPCIPYAYLQAFGSSL 271 (276)
Q Consensus 254 ~s~d~I~vIDp~T~~v~l 271 (276)
.+ ..|.+-||+||++..
T Consensus 210 ~d-gti~~Wn~ktg~p~~ 226 (399)
T KOG0296|consen 210 DD-GTIIVWNPKTGQPLH 226 (399)
T ss_pred cC-ceEEEEecCCCceeE
Confidence 66 899999999987654
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=91.84 E-value=0.33 Score=38.37 Aligned_cols=45 Identities=16% Similarity=0.290 Sum_probs=34.7
Q ss_pred CCEEEEEeCCCCcE---EEEEecCCCCeeEEeeCCCEEEEEC-CCceEEEE
Q 023864 169 QKTGFIYDQNNLNK---LEEFTHQMKDGWGLATDGKVLFGSD-GSSMLYQI 215 (276)
Q Consensus 169 ~~~v~V~D~~tlk~---i~~~~~~~~EGWGLT~Dg~~L~vSD-GS~~L~vi 215 (276)
+|+++.||++|.+. +..+.++ .|..|++|++.|+++. +..+|..+
T Consensus 36 ~GRll~ydp~t~~~~vl~~~L~fp--NGVals~d~~~vlv~Et~~~Ri~ry 84 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLLDGLYFP--NGVALSPDESFVLVAETGRYRILRY 84 (89)
T ss_dssp -EEEEEEETTTTEEEEEEEEESSE--EEEEE-TTSSEEEEEEGGGTEEEEE
T ss_pred CcCEEEEECCCCeEEEehhCCCcc--CeEEEcCCCCEEEEEeccCceEEEE
Confidence 57889999999874 3455554 9999999999999998 67777654
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.73 E-value=6.7 Score=37.77 Aligned_cols=155 Identities=16% Similarity=0.123 Sum_probs=86.0
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEE--EEeCCCCcEEE---EeecCC----CceEEEEEEe--CC
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVR--RVALETGKVEA---INQMEG----SYFGEGLTLL--GE 160 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~--~iDl~tgkv~~---~~~l~~----~~FgEGit~~--g~ 160 (276)
.-+++.++|.+--.=.+|+++.++|+.-.+.= ....+. .+|.+|+-... +++|+. +-=-||++.+ +.
T Consensus 116 ~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dE--R~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~ 193 (316)
T COG3204 116 EGDLIRTIPLTGFSDPETIEYIGGNQFVIVDE--RDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDH 193 (316)
T ss_pred CCceEEEecccccCChhHeEEecCCEEEEEeh--hcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCc
Confidence 34688899976444458999998777655433 444444 45555442211 344542 2223999997 47
Q ss_pred EEEEEEeeC-CEEEEEeCC--CCcE--------EEEEecCCCCeeEEeeC---CCEEEEECCCceEEEEcCCCCcEEEEE
Q 023864 161 KLFQVTWLQ-KTGFIYDQN--NLNK--------LEEFTHQMKDGWGLATD---GKVLFGSDGSSMLYQIDPQTLKVIRKD 226 (276)
Q Consensus 161 ~LyqlTwk~-~~v~V~D~~--tlk~--------i~~~~~~~~EGWGLT~D---g~~L~vSDGS~~L~viDp~t~~vi~~I 226 (276)
+||++-.++ -.+|.++.. .+.. ...+-. .+==||..| +..|+.||-|..|..+|.. +.++..+
T Consensus 194 ~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~--~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~l 270 (316)
T COG3204 194 RLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFV--LDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELL 270 (316)
T ss_pred eEEEEEccCCcEEEEEecCCcccccccccCcccccceEe--eccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeE
Confidence 888887765 345555522 1111 111111 111244444 3345559999999999955 6677777
Q ss_pred EeeeCCE----eeeeeeeeEEE-CCEEEEE
Q 023864 227 IVRYKGR----EVRNLNELEFI-KGEVWAN 251 (276)
Q Consensus 227 ~V~~~g~----pv~~lNELE~i-dG~lyAN 251 (276)
....+.+ -+.+..-+... +|.||+-
T Consensus 271 sL~~g~~gL~~dipqaEGiamDd~g~lYIv 300 (316)
T COG3204 271 SLTKGNHGLSSDIPQAEGIAMDDDGNLYIV 300 (316)
T ss_pred EeccCCCCCcccCCCcceeEECCCCCEEEE
Confidence 7754322 23334333344 3568854
|
|
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=91.45 E-value=1.7 Score=42.18 Aligned_cols=57 Identities=21% Similarity=0.383 Sum_probs=44.1
Q ss_pred CCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEE
Q 023864 105 AFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVT 166 (276)
Q Consensus 105 aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlT 166 (276)
+|.++--++ ||+||.+.- |...|..+|+++|+......+|. |.-||++.|+.+++--
T Consensus 203 smPhSPRWh-dgrLwvlds--gtGev~~vD~~~G~~e~Va~vpG--~~rGL~f~G~llvVgm 259 (335)
T TIGR03032 203 SMPHSPRWY-QGKLWLLNS--GRGELGYVDPQAGKFQPVAFLPG--FTRGLAFAGDFAFVGL 259 (335)
T ss_pred cCCcCCcEe-CCeEEEEEC--CCCEEEEEcCCCCcEEEEEECCC--CCcccceeCCEEEEEe
Confidence 344444555 589999866 88999999999999988888987 4568888887777644
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.42 E-value=8.9 Score=38.02 Aligned_cols=117 Identities=13% Similarity=0.060 Sum_probs=73.7
Q ss_pred CceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEE-EEeCCEEEEEEeeCCEEEEEeCCCCcEEE
Q 023864 106 FTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGL-TLLGEKLFQVTWLQKTGFIYDQNNLNKLE 184 (276)
Q Consensus 106 FTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGi-t~~g~~LyqlTwk~~~v~V~D~~tlk~i~ 184 (276)
=+++|.++|.-.++.++| .++.+++||..|..-+....=-..+.+.-+ ...+..+|-.. .+.++-.+|....+-..
T Consensus 237 ~V~~L~lhPTldvl~t~g--rDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S-~D~tvrlWDl~agkt~~ 313 (460)
T KOG0285|consen 237 GVYCLDLHPTLDVLVTGG--RDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGS-HDSTVRLWDLRAGKTMI 313 (460)
T ss_pred eeEEEeccccceeEEecC--CcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEec-CCceEEEeeeccCceeE
Confidence 346888888655666667 789999999999865444321122222222 22355555443 57788889988887776
Q ss_pred EEecCCCCeeEEe-eCCCEEEEECCCceEEEEcCCCCcEEEE
Q 023864 185 EFTHQMKDGWGLA-TDGKVLFGSDGSSMLYQIDPQTLKVIRK 225 (276)
Q Consensus 185 ~~~~~~~EGWGLT-~Dg~~L~vSDGS~~L~viDp~t~~vi~~ 225 (276)
+...-..---+|+ +....+|.|-+.|.+-.++...++....
T Consensus 314 tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~n 355 (460)
T KOG0285|consen 314 TLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQN 355 (460)
T ss_pred eeecccceeeEEecCCchhhhhccCCccceeccCCccchhhc
Confidence 6643212222454 3456889999999998888766655443
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.40 E-value=4.3 Score=40.89 Aligned_cols=153 Identities=11% Similarity=0.026 Sum_probs=98.3
Q ss_pred eEEEEecCCEEEEEcCCCCCCeEEEEeCCC-------CcEEEEeecCCC-----ceEEEEEEeCCEEEEEEeeCCEEEEE
Q 023864 108 QGLLYAENDTLFESTGLYGRSSVRRVALET-------GKVEAINQMEGS-----YFGEGLTLLGEKLFQVTWLQKTGFIY 175 (276)
Q Consensus 108 QGL~~~~dg~LyeStG~yg~S~I~~iDl~t-------gkv~~~~~l~~~-----~FgEGit~~g~~LyqlTwk~~~v~V~ 175 (276)
--|.|++||.++.++| .+..|++|++.+ +.+.....+..+ .+=.|.--.+.+||-+. .++++-+|
T Consensus 127 TcL~fs~dgs~iiTgs--kDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS-~D~t~k~w 203 (476)
T KOG0646|consen 127 TCLKFSDDGSHIITGS--KDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS-EDRTIKLW 203 (476)
T ss_pred eEEEEeCCCcEEEecC--CCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEec-CCceEEEE
Confidence 4688999999888888 888999997632 222111112211 11111111345777665 57899999
Q ss_pred eCCCCcEEEEEecC-CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEE-------------EEEEe--e-eCCEeeeee
Q 023864 176 DQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVI-------------RKDIV--R-YKGREVRNL 238 (276)
Q Consensus 176 D~~tlk~i~~~~~~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi-------------~~I~V--~-~~g~pv~~l 238 (276)
|.....++.++.+| ..-...+.|-+...|+......|++.+-.+..-. .++.+ + .++.+|.-|
T Consensus 204 dlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcL 283 (476)
T KOG0646|consen 204 DLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCL 283 (476)
T ss_pred EeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEE
Confidence 99999999998766 3466778888999999777778888885554311 11222 1 122344333
Q ss_pred eeeEE-ECCEEEEEeCCCCCeEEEEeCCCC
Q 023864 239 NELEF-IKGEVWANVWQVWPCIPYAYLQAF 267 (276)
Q Consensus 239 NELE~-idG~lyANvw~s~d~I~vIDp~T~ 267 (276)
++ .||.+.+.=-.+ +.|.+=|+.+.
T Consensus 284 ---ais~DgtlLlSGd~d-g~VcvWdi~S~ 309 (476)
T KOG0646|consen 284 ---AISTDGTLLLSGDED-GKVCVWDIYSK 309 (476)
T ss_pred ---EEecCccEEEeeCCC-CCEEEEecchH
Confidence 33 488888877666 88888888883
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=91.37 E-value=8 Score=39.76 Aligned_cols=130 Identities=17% Similarity=0.228 Sum_probs=82.0
Q ss_pred ecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCC
Q 023864 100 PHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNN 179 (276)
Q Consensus 100 Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~t 179 (276)
-|....| ||+.+|+..+|..+| -.-.++.|+ ..|++-...+... +|.+.++.--...+---++.-+|+|.++
T Consensus 366 gh~delw--gla~hps~~q~~T~g--qdk~v~lW~--~~k~~wt~~~~d~--~~~~~fhpsg~va~Gt~~G~w~V~d~e~ 437 (626)
T KOG2106|consen 366 GHGDELW--GLATHPSKNQLLTCG--QDKHVRLWN--DHKLEWTKIIEDP--AECADFHPSGVVAVGTATGRWFVLDTET 437 (626)
T ss_pred eccccee--eEEcCCChhheeecc--CcceEEEcc--CCceeEEEEecCc--eeEeeccCcceEEEeeccceEEEEeccc
Confidence 3556777 999999888888888 566788888 5566655555544 3333443211555556688888888888
Q ss_pred CcEEEEEecCCCCeeE---EeeCCCEEEEEC--CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE
Q 023864 180 LNKLEEFTHQMKDGWG---LATDGKVLFGSD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI 244 (276)
Q Consensus 180 lk~i~~~~~~~~EGWG---LT~Dg~~L~vSD--GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i 244 (276)
+.+-++... +|... .++||..|-|.- +.=.||.+|...++..+-=.. .|.|+.+| .|.
T Consensus 438 -~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~--~gs~ithL---DwS 500 (626)
T KOG2106|consen 438 -QDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKC--SGSPITHL---DWS 500 (626)
T ss_pred -ceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeee--cCceeEEe---eec
Confidence 444455444 34443 678999998854 455677788766655432111 23566554 465
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.31 E-value=4.1 Score=43.45 Aligned_cols=105 Identities=14% Similarity=0.166 Sum_probs=76.0
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEee-----cCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCC
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQ-----MEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQN 178 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~-----l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~ 178 (276)
.+-+--|.|+..|..+.|.| -+..|.+||+-...-..+.. +-+..| +.++.+.+.+-+++.+-.||.+
T Consensus 107 K~AVt~l~fd~~G~rlaSGs--kDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F-----~~~~~~lvS~sKDs~iK~WdL~ 179 (888)
T KOG0306|consen 107 KAAVTTLKFDKIGTRLASGS--KDTDIIVWDLVGEEGLFRLRGHKDSITQALF-----LNGDSFLVSVSKDSMIKFWDLE 179 (888)
T ss_pred ccceEEEEEcccCceEeecC--CCccEEEEEeccceeeEEeecchHHHhHHhc-----cCCCeEEEEeccCceEEEEecc
Confidence 44456789998898888877 78889999986543322221 111222 2268999999999999999999
Q ss_pred CCcEEEEEecCCCCeeEEeeCCCEEEEEC--CCceEEEE
Q 023864 179 NLNKLEEFTHQMKDGWGLATDGKVLFGSD--GSSMLYQI 215 (276)
Q Consensus 179 tlk~i~~~~~~~~EGWGLT~Dg~~L~vSD--GS~~L~vi 215 (276)
|.....+.=-..+|=|||+-+++.++..- +.-++|-+
T Consensus 180 tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L 218 (888)
T KOG0306|consen 180 TQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWEL 218 (888)
T ss_pred cceeeeEEecccceEEEEEEecceEEEEecCCceEEEEe
Confidence 99998887433579999999998887744 44455555
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=91.08 E-value=6.2 Score=39.25 Aligned_cols=138 Identities=17% Similarity=0.080 Sum_probs=78.3
Q ss_pred CCCCeEEEEeCCCCcEEEEeecCCC-ceEEEEEEeCCEEEEEEeeCCE---EEEEeCCCCcEEEEEecC-CCCeeEEeeC
Q 023864 125 YGRSSVRRVALETGKVEAINQMEGS-YFGEGLTLLGEKLFQVTWLQKT---GFIYDQNNLNKLEEFTHQ-MKDGWGLATD 199 (276)
Q Consensus 125 yg~S~I~~iDl~tgkv~~~~~l~~~-~FgEGit~~g~~LyqlTwk~~~---v~V~D~~tlk~i~~~~~~-~~EGWGLT~D 199 (276)
.....+..-|.+ |...+....... .--.....++.++.-+....+. +++.|.++.+...-...+ +.+.-.++||
T Consensus 170 ~~~~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspD 248 (425)
T COG0823 170 PLPYELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPD 248 (425)
T ss_pred CCCceEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCC
Confidence 345556666655 544444332211 1112223334454444544444 899999887755444433 2233358999
Q ss_pred CCEEEE-E--CCCceEEEEcCCCCcEEEEEEe--eeCCEeeeeeeeeEEECCE--EEEEeCCCCCeEEEEeCCCCcEE
Q 023864 200 GKVLFG-S--DGSSMLYQIDPQTLKVIRKDIV--RYKGREVRNLNELEFIKGE--VWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 200 g~~L~v-S--DGS~~L~viDp~t~~vi~~I~V--~~~g~pv~~lNELE~idG~--lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
|+.|.+ + ||.-.||++|..+.+..+ +.= +.+..|.... ||+ +|++--.-...|.+.|++...+.
T Consensus 249 G~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~sp------dG~~ivf~Sdr~G~p~I~~~~~~g~~~~ 319 (425)
T COG0823 249 GSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSP------DGSKIVFTSDRGGRPQIYLYDLEGSQVT 319 (425)
T ss_pred CCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCC------CCCEEEEEeCCCCCcceEEECCCCCcee
Confidence 998766 3 389999999998877443 222 1233343322 563 55655443368999999987654
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.07 E-value=4.1 Score=38.39 Aligned_cols=109 Identities=14% Similarity=0.098 Sum_probs=68.2
Q ss_pred eEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC-CceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEE
Q 023864 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG-SYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (276)
Q Consensus 108 QGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~-~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~ 186 (276)
.-.-|..||.-...+| .+-.|+-|++..|.++++..=-. ...-..++.+| .=|..---+..+.+||.+|.|++++|
T Consensus 21 ~avryN~dGnY~ltcG--sdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dn-skf~s~GgDk~v~vwDV~TGkv~Rr~ 97 (307)
T KOG0316|consen 21 RAVRYNVDGNYCLTCG--SDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDN-SKFASCGGDKAVQVWDVNTGKVDRRF 97 (307)
T ss_pred EEEEEccCCCEEEEcC--CCceEEeecccccceeeeecCCCceeeeccccccc-cccccCCCCceEEEEEcccCeeeeec
Confidence 4556666787777788 78889999999999988764211 11111122223 33333345678889999999999999
Q ss_pred ecCCCCeeEEeeCCC-EEEEECC-CceEEEEcCCC
Q 023864 187 THQMKDGWGLATDGK-VLFGSDG-SSMLYQIDPQT 219 (276)
Q Consensus 187 ~~~~~EGWGLT~Dg~-~L~vSDG-S~~L~viDp~t 219 (276)
.--.++==.+..+.+ .+++|-+ ..++..+|=.+
T Consensus 98 rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS 132 (307)
T KOG0316|consen 98 RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRS 132 (307)
T ss_pred ccccceeeEEEecCcceEEEeccccceeEEEEccc
Confidence 632122223444443 4555554 77888888433
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.95 E-value=5.6 Score=41.80 Aligned_cols=147 Identities=14% Similarity=0.127 Sum_probs=96.1
Q ss_pred CCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCC-ceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCc
Q 023864 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGS-YFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLN 181 (276)
Q Consensus 103 ~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~-~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk 181 (276)
+..-..-|+..+.|++++++| -+..|+.||+.|++-+-+.. +.. -.-.=+.-++++=..-+--++++-++|....+
T Consensus 170 ~k~siYSLA~N~t~t~ivsGg--tek~lr~wDprt~~kimkLr-GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQr 246 (735)
T KOG0308|consen 170 PKDSIYSLAMNQTGTIIVSGG--TEKDLRLWDPRTCKKIMKLR-GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQR 246 (735)
T ss_pred CccceeeeecCCcceEEEecC--cccceEEeccccccceeeee-ccccceEEEEEcCCCCeEeecCCCceEEeeeccccc
Confidence 444446788877789999888 67889999999987444433 211 11111222334445556678999999999999
Q ss_pred EEEEEecCCCCeeEEee--CCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCC
Q 023864 182 KLEEFTHQMKDGWGLAT--DGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQV 255 (276)
Q Consensus 182 ~i~~~~~~~~EGWGLT~--Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s 255 (276)
-+.++.....-=|+|.. +=+++|..|.+..|+.=|..+++. ...+-.+..|+..+- +--.+.-+|+.-|.+
T Consensus 247 Cl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~--~tlick~daPv~~l~-~~~~~~~~WvtTtds 319 (735)
T KOG0308|consen 247 CLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAK--STLICKEDAPVLKLH-LHEHDNSVWVTTTDS 319 (735)
T ss_pred eeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchh--heEeecCCCchhhhh-hccccCCceeeeccc
Confidence 99998765223588754 346788888888999999988733 233333446666442 112244568888765
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.90 E-value=14 Score=37.29 Aligned_cols=139 Identities=15% Similarity=0.135 Sum_probs=95.6
Q ss_pred EEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCce-EEEEEEe-CCEEEEEEeeCCEEEEE
Q 023864 98 EFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYF-GEGLTLL-GEKLFQVTWLQKTGFIY 175 (276)
Q Consensus 98 ~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~F-gEGit~~-g~~LyqlTwk~~~v~V~ 175 (276)
..||+. -+-||..++.|.-+.|+- .+...-..|..+|..+-++.-...-. =-.++++ ++-||.+---++.+-+|
T Consensus 299 ~~~h~~--~V~~ls~h~tgeYllsAs--~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiw 374 (506)
T KOG0289|consen 299 SRPHEE--PVTGLSLHPTGEYLLSAS--NDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIW 374 (506)
T ss_pred cccccc--cceeeeeccCCcEEEEec--CCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEE
Confidence 456743 346999999887666666 77889999999998877765432211 1133444 46777777788999999
Q ss_pred eCCCCcEEEEEecCC--CCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE
Q 023864 176 DQNNLNKLEEFTHQM--KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI 244 (276)
Q Consensus 176 D~~tlk~i~~~~~~~--~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i 244 (276)
|..+......|+-.. ---..++-+|.+|.+.--...|..+|....+-.+++...+.. -.|-++++
T Consensus 375 dlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~----~v~s~~fD 441 (506)
T KOG0289|consen 375 DLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK----EVNSLSFD 441 (506)
T ss_pred EcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc----cceeEEEc
Confidence 999999888887431 123447778999988433333999999988888888776521 24555555
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.82 E-value=12 Score=40.56 Aligned_cols=160 Identities=13% Similarity=0.087 Sum_probs=97.4
Q ss_pred EEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCC-cEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEE
Q 023864 96 VNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETG-KVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFI 174 (276)
Q Consensus 96 v~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tg-kv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V 174 (276)
.-+|-| ...+ +++.|+++|..+.++| -+-.|++|+-..- +--..+.. ..-+.-+++...+ .|...-.++.+.+
T Consensus 7 klRyah-t~G~-t~i~~d~~gefi~tcg--sdg~ir~~~~~sd~e~P~ti~~-~g~~v~~ia~~s~-~f~~~s~~~tv~~ 80 (933)
T KOG1274|consen 7 KLRYAH-TGGL-TLICYDPDGEFICTCG--SDGDIRKWKTNSDEEEPETIDI-SGELVSSIACYSN-HFLTGSEQNTVLR 80 (933)
T ss_pred cchhhc-cCce-EEEEEcCCCCEEEEec--CCCceEEeecCCcccCCchhhc-cCceeEEEeeccc-ceEEeeccceEEE
Confidence 334556 4456 7899999987666678 6667888875443 11111111 3344556666665 5666667888888
Q ss_pred EeCCCCc---EEEEEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEE
Q 023864 175 YDQNNLN---KLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWA 250 (276)
Q Consensus 175 ~D~~tlk---~i~~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyA 250 (276)
|...+.+ .|.+|..|+ .-..+..+|+++...--.-.|-+++..+...++...=.+ .|+..+ .|. +|.+.|
T Consensus 81 y~fps~~~~~iL~Rftlp~-r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~--apVl~l---~~~p~~~fLA 154 (933)
T KOG1274|consen 81 YKFPSGEEDTILARFTLPI-RDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHD--APVLQL---SYDPKGNFLA 154 (933)
T ss_pred eeCCCCCccceeeeeeccc-eEEEEecCCcEEEeecCceeEEEEeccccchheeecccC--Cceeee---eEcCCCCEEE
Confidence 8876654 678888874 555666777776653224456667766654443332211 233333 244 566666
Q ss_pred EeCCCCCeEEEEeCCCCc
Q 023864 251 NVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 251 Nvw~s~d~I~vIDp~T~~ 268 (276)
..--+ ..|.++|.+++.
T Consensus 155 vss~d-G~v~iw~~~~~~ 171 (933)
T KOG1274|consen 155 VSSCD-GKVQIWDLQDGI 171 (933)
T ss_pred EEecC-ceEEEEEcccch
Confidence 66556 788888888743
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.78 E-value=2.6 Score=41.13 Aligned_cols=150 Identities=21% Similarity=0.261 Sum_probs=90.6
Q ss_pred CCCCceEEEEecCC-EEEEEcCCCCCCeEEEEeC-CCCcEEEEee-cCCCceEE-----EEEEe--CCEEEEEEeeCCEE
Q 023864 103 PRAFTQGLLYAEND-TLFESTGLYGRSSVRRVAL-ETGKVEAINQ-MEGSYFGE-----GLTLL--GEKLFQVTWLQKTG 172 (276)
Q Consensus 103 ~~aFTQGL~~~~dg-~LyeStG~yg~S~I~~iDl-~tgkv~~~~~-l~~~~FgE-----Git~~--g~~LyqlTwk~~~v 172 (276)
..|+ -|.|++|| +|| +| .++.|+++|+ .+|+--.... +-++-||. -+++. +-+.+.+--..+++
T Consensus 159 taAh--sL~Fs~DGeqlf--aG--ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~ 232 (406)
T KOG2919|consen 159 TAAH--SLQFSPDGEQLF--AG--YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRV 232 (406)
T ss_pred hhhe--eEEecCCCCeEe--ec--ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeeccccee
Confidence 3455 79999998 488 67 7899999999 5665322211 11111221 12332 45667776778888
Q ss_pred EEEeCCCCcEEEEEecCCCCeeEEe-----eCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE--
Q 023864 173 FIYDQNNLNKLEEFTHQMKDGWGLA-----TDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-- 244 (276)
Q Consensus 173 ~V~D~~tlk~i~~~~~~~~EGWGLT-----~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-- 244 (276)
=+|.-...+++...- + .|=|+| +||.+||..- -+++|..+|-..-+ -.|..-++.+.+.|+=-+.
T Consensus 233 giy~~~~~~pl~llg-g--h~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~----~pv~~L~rhv~~TNQRI~FDl 305 (406)
T KOG2919|consen 233 GIYNDDGRRPLQLLG-G--HGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR----DPVYALERHVGDTNQRILFDL 305 (406)
T ss_pred eeEecCCCCceeeec-c--cCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc----chhhhhhhhccCccceEEEec
Confidence 888888888877664 2 333444 5999999955 58999999955321 1222223344444443333
Q ss_pred --CCEEEEEeCCCCCeEEEEeCCC
Q 023864 245 --KGEVWANVWQVWPCIPYAYLQA 266 (276)
Q Consensus 245 --dG~lyANvw~s~d~I~vIDp~T 266 (276)
+|++.|.=-.+ ..|.|-|.++
T Consensus 306 d~~~~~LasG~td-G~V~vwdlk~ 328 (406)
T KOG2919|consen 306 DPKGEILASGDTD-GSVRVWDLKD 328 (406)
T ss_pred CCCCceeeccCCC-ccEEEEecCC
Confidence 35566555444 6677777766
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.57 E-value=14 Score=35.66 Aligned_cols=117 Identities=20% Similarity=0.236 Sum_probs=72.1
Q ss_pred EEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEE---e-CCEEEEEEeeCC
Q 023864 95 VVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL---L-GEKLFQVTWLQK 170 (276)
Q Consensus 95 Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~---~-g~~LyqlTwk~~ 170 (276)
....|.|+ .+- --.+|.++.+.|. .| =+..|+++|+.+++... ++.+ .+|+.- . ..-..+..=.++
T Consensus 47 l~~~~~~~-~pl-L~c~F~d~~~~~~-G~--~dg~vr~~Dln~~~~~~---igth--~~~i~ci~~~~~~~~vIsgsWD~ 116 (323)
T KOG1036|consen 47 LKLKFKHG-APL-LDCAFADESTIVT-GG--LDGQVRRYDLNTGNEDQ---IGTH--DEGIRCIEYSYEVGCVISGSWDK 116 (323)
T ss_pred hhhheecC-Cce-eeeeccCCceEEE-ec--cCceEEEEEecCCccee---eccC--CCceEEEEeeccCCeEEEcccCc
Confidence 44445552 222 3456665567774 33 46789999999986432 2322 222222 1 122333444578
Q ss_pred EEEEEeCCCCcEEEEEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcE
Q 023864 171 TGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKV 222 (276)
Q Consensus 171 ~v~V~D~~tlk~i~~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~v 222 (276)
++-+||+.+-.+.+++..+ +-=+.++--|..|+|.--...+.++|..++..
T Consensus 117 ~ik~wD~R~~~~~~~~d~~-kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~ 167 (323)
T KOG1036|consen 117 TIKFWDPRNKVVVGTFDQG-KKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDE 167 (323)
T ss_pred cEEEEeccccccccccccC-ceEEEEeccCCEEEEeecCceEEEEEcccccc
Confidence 8999999987777777654 33345777889999955567888999877543
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=90.54 E-value=1.5 Score=43.41 Aligned_cols=102 Identities=18% Similarity=0.255 Sum_probs=49.4
Q ss_pred CEEEEEEeeCCEEEEEeCCCCcEEEEEecC---------CCCeeEEeeCCCE-EEEEC--CCceEEEEcCCCCcEEEEEE
Q 023864 160 EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ---------MKDGWGLATDGKV-LFGSD--GSSMLYQIDPQTLKVIRKDI 227 (276)
Q Consensus 160 ~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~---------~~EGWGLT~Dg~~-L~vSD--GS~~L~viDp~t~~vi~~I~ 227 (276)
++.+.+.|+ .-.|+.|...+.++.-+ ..-+ ++.||+. ||.|| |..+++.+|.+|+++++--.
T Consensus 4 g~~~~~~~~----~~~D~~TG~~VtrLT~~~~~~h~~YF~~~~--ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTd 77 (386)
T PF14583_consen 4 GTTIPLEFK----TWIDPDTGHRVTRLTPPDGHSHRLYFYQNC--FTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTD 77 (386)
T ss_dssp T-EEE--EE----EEE-TTT--EEEE-S-TTS-EE---TTS----B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---
T ss_pred CcEecccee----EEeCCCCCceEEEecCCCCcccceeecCCC--cCCCCCEEEEEeccCCCcceEEEEcccCEEEECcc
Confidence 344555544 46789888888777411 1133 4889965 57787 78999999999998754332
Q ss_pred eeeCCEeeeeeeeeEEE-CCEEEEEeCCCCCeEEEEeCCCCcEEEEE
Q 023864 228 VRYKGREVRNLNELEFI-KGEVWANVWQVWPCIPYAYLQAFGSSLVY 273 (276)
Q Consensus 228 V~~~g~pv~~lNELE~i-dG~lyANvw~s~d~I~vIDp~T~~v~l~~ 273 (276)
-. |.. ..-+.... +..||- ++.. ..+.++|.+|+++..-|
T Consensus 78 g~--g~~--~~g~~~s~~~~~~~Y-v~~~-~~l~~vdL~T~e~~~vy 118 (386)
T PF14583_consen 78 GP--GDN--TFGGFLSPDDRALYY-VKNG-RSLRRVDLDTLEERVVY 118 (386)
T ss_dssp SS---B---TTT-EE-TTSSEEEE-EETT-TEEEEEETTT--EEEEE
T ss_pred CC--CCC--ccceEEecCCCeEEE-EECC-CeEEEEECCcCcEEEEE
Confidence 11 100 00011122 334432 5566 78999999999875544
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.39 E-value=1.3 Score=43.54 Aligned_cols=62 Identities=13% Similarity=0.137 Sum_probs=53.0
Q ss_pred CCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEe
Q 023864 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW 167 (276)
Q Consensus 103 ~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTw 167 (276)
...|+.|++|+|.|+.+.|+. ++-+|++||+.+++-....+ +..-|-.-+.++++..|++|=
T Consensus 333 hdnwVr~~af~p~Gkyi~Sca--DDktlrvwdl~~~~cmk~~~-ah~hfvt~lDfh~~~p~VvTG 394 (406)
T KOG0295|consen 333 HDNWVRGVAFSPGGKYILSCA--DDKTLRVWDLKNLQCMKTLE-AHEHFVTSLDFHKTAPYVVTG 394 (406)
T ss_pred ccceeeeeEEcCCCeEEEEEe--cCCcEEEEEeccceeeeccC-CCcceeEEEecCCCCceEEec
Confidence 368999999999999888888 88999999999998777766 445688889999999999883
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=90.35 E-value=1.3 Score=27.73 Aligned_cols=38 Identities=11% Similarity=0.237 Sum_probs=30.7
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEe
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVA 134 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iD 134 (276)
+.+.++.. .......+.|++++.++.+++ .+..|++||
T Consensus 2 ~~~~~~~~-h~~~i~~i~~~~~~~~~~s~~--~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRG-HSSSINSIAWSPDGNFLASGS--SDGTIRVWD 39 (39)
T ss_dssp EEEEEEES-SSSSEEEEEEETTSSEEEEEE--TTSEEEEEE
T ss_pred eEEEEEcC-CCCcEEEEEEecccccceeeC--CCCEEEEEC
Confidence 46677765 467778999999988888888 788999887
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.34 E-value=7.2 Score=39.74 Aligned_cols=120 Identities=10% Similarity=0.048 Sum_probs=75.3
Q ss_pred ceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEe-ecCCCceEEEEEEeCCEEEEEE--eeCCEEEEEeCCCCcEE
Q 023864 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAIN-QMEGSYFGEGLTLLGEKLFQVT--WLQKTGFIYDQNNLNKL 183 (276)
Q Consensus 107 TQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~-~l~~~~FgEGit~~g~~LyqlT--wk~~~v~V~D~~tlk~i 183 (276)
+=||.+++|+..++|.| .++.+.+||..+-....++ ..-...-+-....+-.-|-..- -.++.+-.+|..+.+.+
T Consensus 304 VCgLkws~d~~~lASGg--nDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i 381 (484)
T KOG0305|consen 304 VCGLKWSPDGNQLASGG--NDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARI 381 (484)
T ss_pred eeeeEECCCCCeeccCC--CccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEe
Confidence 35999999999999999 8999999999433322221 1111111111111111111110 14677788999999999
Q ss_pred EEEecCCCCeeEEee--CCCEEEEECC--CceEEEEcCCCCcEEEEEEee
Q 023864 184 EEFTHQMKDGWGLAT--DGKVLFGSDG--SSMLYQIDPQTLKVIRKDIVR 229 (276)
Q Consensus 184 ~~~~~~~~EGWGLT~--Dg~~L~vSDG--S~~L~viDp~t~~vi~~I~V~ 229 (276)
..+.+. .+=..|.. ..+.|..+=| .+.|.+++-.+++.+..+...
T Consensus 382 ~~vdtg-sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH 430 (484)
T KOG0305|consen 382 DSVDTG-SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGH 430 (484)
T ss_pred cccccC-CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCC
Confidence 999875 23344554 4566888776 778999998888776655443
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.82 E-value=13 Score=38.25 Aligned_cols=174 Identities=9% Similarity=0.049 Sum_probs=112.2
Q ss_pred eEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEE--EEeCCEEEEEEeeCC
Q 023864 93 IQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGL--TLLGEKLFQVTWLQK 170 (276)
Q Consensus 93 ~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGi--t~~g~~LyqlTwk~~ 170 (276)
.+.+..++.|++.=+-|+.|...+.-+. ++. ....|.+-.+.|+.-......|.+----=+ ......|....-.+|
T Consensus 110 ~kl~hr~lkdh~stvt~v~YN~~DeyiA-svs-~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G 187 (673)
T KOG4378|consen 110 AKLIHRFLKDHQSTVTYVDYNNTDEYIA-SVS-DGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKG 187 (673)
T ss_pred HHHHhhhccCCcceeEEEEecCCcceeE-Eec-cCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCC
Confidence 3566777878887778888865444333 332 223455666666653333333321110001 112356667777889
Q ss_pred EEEEEeCCCCcEEEEEe----cCCCCeeEEeeCCCEEEEECC-CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-
Q 023864 171 TGFIYDQNNLNKLEEFT----HQMKDGWGLATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI- 244 (276)
Q Consensus 171 ~v~V~D~~tlk~i~~~~----~~~~EGWGLT~Dg~~L~vSDG-S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i- 244 (276)
.|.+||.+...++-.+. .| ..|.-++|-...|++|=| +.+|+.+|....+...++.-. +|+..+ .+-
T Consensus 188 ~VtlwDv~g~sp~~~~~~~HsAP-~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~---~Plstv---af~~ 260 (673)
T KOG4378|consen 188 AVTLWDVQGMSPIFHASEAHSAP-CRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYS---HPLSTV---AFSE 260 (673)
T ss_pred eEEEEeccCCCcccchhhhccCC-cCcceecCCccceEEEecccceEEEeecccccccceeeec---CCccee---eecC
Confidence 99999999999887664 23 467778999999999998 889999999887777776554 344432 333
Q ss_pred CCEEEEEeCCCCCeEEEEeCCCCcEEEEEEeC
Q 023864 245 KGEVWANVWQVWPCIPYAYLQAFGSSLVYVTA 276 (276)
Q Consensus 245 dG~lyANvw~s~d~I~vIDp~T~~v~l~~~~~ 276 (276)
+|++.+.=-.. .+|+.-|....+..++.++|
T Consensus 261 ~G~~L~aG~s~-G~~i~YD~R~~k~Pv~v~sa 291 (673)
T KOG4378|consen 261 CGTYLCAGNSK-GELIAYDMRSTKAPVAVRSA 291 (673)
T ss_pred CceEEEeecCC-ceEEEEecccCCCCceEeee
Confidence 56644433244 78888888887777777664
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.49 E-value=1.9 Score=42.71 Aligned_cols=149 Identities=16% Similarity=0.097 Sum_probs=84.1
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEe-ecCCCceEEEEEEe----CCEEEEEEe--eCCEEEEEe
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAIN-QMEGSYFGEGLTLL----GEKLFQVTW--LQKTGFIYD 176 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~-~l~~~~FgEGit~~----g~~LyqlTw--k~~~v~V~D 176 (276)
++=+.-|.|++||+++.+.| ++ +.++||.++|.-+++. +.++.+-=+-+-+. ++.||.++. ..+.+-.+|
T Consensus 186 ~~eV~DL~FS~dgk~lasig--~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~ 262 (398)
T KOG0771|consen 186 HAEVKDLDFSPDGKFLASIG--AD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCD 262 (398)
T ss_pred cCccccceeCCCCcEEEEec--CC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEE
Confidence 45567899999999988887 55 9999999999433332 23322211111111 134444444 444555555
Q ss_pred CCCCc---------EEEEEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECC-
Q 023864 177 QNNLN---------KLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKG- 246 (276)
Q Consensus 177 ~~tlk---------~i~~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG- 246 (276)
....+ ++..+.. ---..+..||+.+-+.--++.|.++|..+++...-++=- .+. .+.+|++.-.
T Consensus 263 ~~~w~~~~~l~~~~~~~~~~s--iSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~a-H~~---~VT~ltF~Pds 336 (398)
T KOG0771|consen 263 ISLWSGSNFLRLRKKIKRFKS--ISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEA-HLG---FVTGLTFSPDS 336 (398)
T ss_pred eeeeccccccchhhhhhccCc--ceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhh-hee---eeeeEEEcCCc
Confidence 43332 2222210 122357789999988555889999999988776444211 111 4556776643
Q ss_pred EEEEEeCCCCCeEEEE
Q 023864 247 EVWANVWQVWPCIPYA 262 (276)
Q Consensus 247 ~lyANvw~s~d~I~vI 262 (276)
+--+.+-.. +.+.++
T Consensus 337 r~~~svSs~-~~~~v~ 351 (398)
T KOG0771|consen 337 RYLASVSSD-NEAAVT 351 (398)
T ss_pred CcccccccC-CceeEE
Confidence 233445444 544443
|
|
| >PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A | Back alignment and domain information |
|---|
Probab=89.47 E-value=0.87 Score=29.76 Aligned_cols=38 Identities=13% Similarity=0.066 Sum_probs=23.7
Q ss_pred EEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCC
Q 023864 140 VEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNN 179 (276)
Q Consensus 140 v~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~t 179 (276)
++=+.+++. ++-.++++.++++|+.+. ++.++.+|++|
T Consensus 3 ~~W~~~~~~-~~~~~~~v~~g~vyv~~~-dg~l~ald~~t 40 (40)
T PF13570_consen 3 VLWSYDTGG-PIWSSPAVAGGRVYVGTG-DGNLYALDAAT 40 (40)
T ss_dssp EEEEEE-SS----S--EECTSEEEEE-T-TSEEEEEETT-
T ss_pred eeEEEECCC-CcCcCCEEECCEEEEEcC-CCEEEEEeCCC
Confidence 333445554 344567889999999998 89999999875
|
|
| >KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.46 E-value=7 Score=39.29 Aligned_cols=138 Identities=14% Similarity=0.059 Sum_probs=89.5
Q ss_pred eEEEEeCCCCcEE---EEeecCCCceEEEEEEeCCEEEEEEeeCC------EEEEEeCCCCcEE--EEEec-C-CCCeeE
Q 023864 129 SVRRVALETGKVE---AINQMEGSYFGEGLTLLGEKLFQVTWLQK------TGFIYDQNNLNKL--EEFTH-Q-MKDGWG 195 (276)
Q Consensus 129 ~I~~iDl~tgkv~---~~~~l~~~~FgEGit~~g~~LyqlTwk~~------~v~V~D~~tlk~i--~~~~~-~-~~EGWG 195 (276)
.|.++|+++..-. .+...|....|--++..+++||+.-=.+. .+..||..|.+.. ..+.- | ...|-.
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs 168 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHS 168 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccce
Confidence 4888998874332 23345555566777788899999987774 8999998877643 23322 2 246777
Q ss_pred EeeCCCEEEEECC-------CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEE------EeCCCCCeEEEE
Q 023864 196 LATDGKVLFGSDG-------SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWA------NVWQVWPCIPYA 262 (276)
Q Consensus 196 LT~Dg~~L~vSDG-------S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyA------Nvw~s~d~I~vI 262 (276)
++..|+.|||-=| .+.|+++|++|.+-.+-...+....|.. ---|..+++++|+ ..-.. +.+..+
T Consensus 169 ~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~-gH~~~~~~~~~~v~gG~~~~~~~l-~D~~~l 246 (482)
T KOG0379|consen 169 ATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRY-GHAMVVVGNKLLVFGGGDDGDVYL-NDVHIL 246 (482)
T ss_pred EEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCC-CceEEEECCeEEEEeccccCCcee-cceEee
Confidence 8888999999433 6789999999999654444443222111 1123455666555 33345 678888
Q ss_pred eCCCCc
Q 023864 263 YLQAFG 268 (276)
Q Consensus 263 Dp~T~~ 268 (276)
|..|.+
T Consensus 247 dl~~~~ 252 (482)
T KOG0379|consen 247 DLSTWE 252 (482)
T ss_pred ecccce
Confidence 888743
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.32 E-value=5.2 Score=39.22 Aligned_cols=122 Identities=19% Similarity=0.211 Sum_probs=83.2
Q ss_pred CCCceE---EEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEE-eCCEEEEEEeeCCEEEEEeCCC
Q 023864 104 RAFTQG---LLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL-LGEKLFQVTWLQKTGFIYDQNN 179 (276)
Q Consensus 104 ~aFTQG---L~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~-~g~~LyqlTwk~~~v~V~D~~t 179 (276)
.|-|+| |.|+.|+.-..|++ -+-.++.--+.+||.+....=-..|.-|..-- +|.++. ..--++++-||+.+|
T Consensus 303 rAHtkGvt~l~FSrD~SqiLS~s--fD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~ii-saSsDgtvkvW~~Kt 379 (508)
T KOG0275|consen 303 RAHTKGVTCLSFSRDNSQILSAS--FDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHII-SASSDGTVKVWHGKT 379 (508)
T ss_pred hhhccCeeEEEEccCcchhhccc--ccceEEEeccccchhHHHhcCccccccceEEcCCCCeEE-EecCCccEEEecCcc
Confidence 455566 56888875445666 56678888899999876654333444343222 334443 344689999999999
Q ss_pred CcEEEEEecCCCCeeEE------eeCCCEEEEECCCceEEEEcCCCCcEEEEEEeee
Q 023864 180 LNKLEEFTHQMKDGWGL------ATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY 230 (276)
Q Consensus 180 lk~i~~~~~~~~EGWGL------T~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~ 230 (276)
-+-+.+|... ++-+.+ -.+-.+++|-|.+++|++++-+ +++++...-+.
T Consensus 380 teC~~Tfk~~-~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGk 434 (508)
T KOG0275|consen 380 TECLSTFKPL-GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGK 434 (508)
T ss_pred hhhhhhccCC-CCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCC
Confidence 9999998754 333332 1245688899999999999966 88888887764
|
|
| >KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.10 E-value=4.2 Score=40.10 Aligned_cols=60 Identities=20% Similarity=0.217 Sum_probs=46.3
Q ss_pred CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEEC-CEEEE
Q 023864 190 MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIK-GEVWA 250 (276)
Q Consensus 190 ~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~id-G~lyA 250 (276)
.|=|..+...|..||++|+==-|+++||+..+ ...+....+|+|+..+|.|..++ |.||-
T Consensus 116 RPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~-a~~l~~~~~G~~~kf~N~ldI~~~g~vyF 176 (376)
T KOG1520|consen 116 RPLGIRFDKKGGDLYVADAYLGLLKVGPEGGL-AELLADEAEGKPFKFLNDLDIDPEGVVYF 176 (376)
T ss_pred CcceEEeccCCCeEEEEecceeeEEECCCCCc-ceeccccccCeeeeecCceeEcCCCeEEE
Confidence 34566666677799999998899999999876 34455566999999999999874 44553
|
|
| >PF14298 DUF4374: Domain of unknown function (DUF4374) | Back alignment and domain information |
|---|
Probab=89.01 E-value=8.5 Score=38.71 Aligned_cols=61 Identities=26% Similarity=0.299 Sum_probs=38.9
Q ss_pred eeCCEEEEEeCCCCcEEEEEecCC--CCeeE---EeeCCCEEEE----ECC-CceEEEEcCCCCcEEEEEEe
Q 023864 167 WLQKTGFIYDQNNLNKLEEFTHQM--KDGWG---LATDGKVLFG----SDG-SSMLYQIDPQTLKVIRKDIV 228 (276)
Q Consensus 167 wk~~~v~V~D~~tlk~i~~~~~~~--~EGWG---LT~Dg~~L~v----SDG-S~~L~viDp~t~~vi~~I~V 228 (276)
+..++..|+|..+.+...--..|. ..+++ +..+|+ .|+ .|| ...||.|||+|.+.++=++|
T Consensus 364 ~~~~~laI~d~~~kt~t~V~glP~~~is~~~~~~~ve~G~-aYi~Vtt~~g~~~~IY~iDp~TatAtKGl~V 434 (435)
T PF14298_consen 364 SDAKKLAIFDVSNKTFTWVTGLPADLISGFGNAPYVENGK-AYIPVTTEDGSDPYIYKIDPATATATKGLKV 434 (435)
T ss_pred CccceEEEEEccCceeEEeccCChhhccccccceEeeCCE-EEEEEeecCCCceeEEEEcCcccccccceEe
Confidence 345677888887655443333332 24555 455554 433 457 58999999999998876665
|
|
| >PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A | Back alignment and domain information |
|---|
Probab=88.94 E-value=1.4 Score=28.80 Aligned_cols=37 Identities=24% Similarity=0.403 Sum_probs=23.0
Q ss_pred EEEEEecCCCCee-EEeeCCCEEEEECCCceEEEEcCCC
Q 023864 182 KLEEFTHQMKDGW-GLATDGKVLFGSDGSSMLYQIDPQT 219 (276)
Q Consensus 182 ~i~~~~~~~~EGW-GLT~Dg~~L~vSDGS~~L~viDp~t 219 (276)
++-+++.+ .+-+ +++-+++.+|+.+...+|+.+|++|
T Consensus 3 ~~W~~~~~-~~~~~~~~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 3 VLWSYDTG-GPIWSSPAVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp EEEEEE-S-S---S--EECTSEEEEE-TTSEEEEEETT-
T ss_pred eeEEEECC-CCcCcCCEEECCEEEEEcCCCEEEEEeCCC
Confidence 44445544 1222 3667889999999999999999986
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=88.85 E-value=19 Score=35.63 Aligned_cols=140 Identities=12% Similarity=0.082 Sum_probs=90.9
Q ss_pred CEEEEEcCCCCCCeEEEEeCCCCcEEEEee-cCCCceEE-EEEEeCCEEE---EEEeeCCEEEEEeCCCCcEEEEEecC-
Q 023864 116 DTLFESTGLYGRSSVRRVALETGKVEAINQ-MEGSYFGE-GLTLLGEKLF---QVTWLQKTGFIYDQNNLNKLEEFTHQ- 189 (276)
Q Consensus 116 g~LyeStG~yg~S~I~~iDl~tgkv~~~~~-l~~~~FgE-Git~~g~~Ly---qlTwk~~~v~V~D~~tlk~i~~~~~~- 189 (276)
.+|.+. + +++|.+||+.++|+++++. .|+++.|- .++..++.-| =-.-..+.|.+||..+++..-+|+.-
T Consensus 98 ~RLvV~--L--ee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~ 173 (391)
T KOG2110|consen 98 KRLVVC--L--EESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHK 173 (391)
T ss_pred ceEEEE--E--cccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecC
Confidence 577765 2 3459999999999999984 55777632 2233333223 23335799999999999999999732
Q ss_pred -CCCeeEEeeCCCEEEE-ECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCCCCCeEEEEe
Q 023864 190 -MKDGWGLATDGKVLFG-SDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQVWPCIPYAY 263 (276)
Q Consensus 190 -~~EGWGLT~Dg~~L~v-SDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~s~d~I~vID 263 (276)
.=...++.+||..|-- ||-.--|.|++..+++.+.+..=|. .++ ++=-|.+. ++...+..-.+ +.|-+.-
T Consensus 174 ~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~--~~~-~IySL~Fs~ds~~L~~sS~T-eTVHiFK 246 (391)
T KOG2110|consen 174 GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT--YPV-SIYSLSFSPDSQFLAASSNT-ETVHIFK 246 (391)
T ss_pred CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc--eee-EEEEEEECCCCCeEEEecCC-CeEEEEE
Confidence 1134457789988765 6656678888888887765544332 332 45555666 44555666666 6655543
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.78 E-value=4.3 Score=40.63 Aligned_cols=128 Identities=12% Similarity=0.074 Sum_probs=88.0
Q ss_pred EEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEee-cCCCceEEEEEEe-CCEEEEEEeeCCEEE
Q 023864 96 VNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQ-MEGSYFGEGLTLL-GEKLFQVTWLQKTGF 173 (276)
Q Consensus 96 v~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~-l~~~~FgEGit~~-g~~LyqlTwk~~~v~ 173 (276)
++++-+ ..+-+--..|+|+|+.+.++- -+++-+.||++|++-+..+. =....| +|++. ++-|...-=.+..+-
T Consensus 254 l~~l~g-H~~RVs~VafHPsG~~L~Tas--fD~tWRlWD~~tk~ElL~QEGHs~~v~--~iaf~~DGSL~~tGGlD~~~R 328 (459)
T KOG0272|consen 254 LQDLEG-HLARVSRVAFHPSGKFLGTAS--FDSTWRLWDLETKSELLLQEGHSKGVF--SIAFQPDGSLAATGGLDSLGR 328 (459)
T ss_pred hhhhhc-chhhheeeeecCCCceeeecc--cccchhhcccccchhhHhhcccccccc--eeEecCCCceeeccCccchhh
Confidence 444433 235556778999999876544 67789999999986433322 113455 45554 346666666788889
Q ss_pred EEeCCCCcEEEEEecCCC--CeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEe
Q 023864 174 IYDQNNLNKLEEFTHQMK--DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIV 228 (276)
Q Consensus 174 V~D~~tlk~i~~~~~~~~--EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V 228 (276)
|+|..|++.+=.+.--.+ .+..+.|+|..|-..-++++.-++|..--+.+-+|.-
T Consensus 329 vWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipA 385 (459)
T KOG0272|consen 329 VWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPA 385 (459)
T ss_pred eeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceeccc
Confidence 999999998877642222 4555788998888777899999999887766666654
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.75 E-value=9.7 Score=40.29 Aligned_cols=115 Identities=20% Similarity=0.317 Sum_probs=79.8
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEE-EeCCEEEEEEeeCCEE
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLT-LLGEKLFQVTWLQKTG 172 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit-~~g~~LyqlTwk~~~v 172 (276)
+.++++.- ....+.||++-+++.+ .|++ .+..|+.||+ +|+++.+.. +..-|-=-++ ..++.+.+.|=.++++
T Consensus 170 ~~l~tf~g-HtD~VRgL~vl~~~~f-lScs--NDg~Ir~w~~-~ge~l~~~~-ghtn~vYsis~~~~~~~Ivs~gEDrtl 243 (745)
T KOG0301|consen 170 TLLKTFSG-HTDCVRGLAVLDDSHF-LSCS--NDGSIRLWDL-DGEVLLEMH-GHTNFVYSISMALSDGLIVSTGEDRTL 243 (745)
T ss_pred chhhhhcc-chhheeeeEEecCCCe-Eeec--CCceEEEEec-cCceeeeee-ccceEEEEEEecCCCCeEEEecCCceE
Confidence 45566653 4677799999975455 4788 7889999999 666655532 3333444566 5689999999999999
Q ss_pred EEEeCCCCcEEEEEecCCCCeeEEee--CCCEEEE-ECCCceEEEEc
Q 023864 173 FIYDQNNLNKLEEFTHQMKDGWGLAT--DGKVLFG-SDGSSMLYQID 216 (276)
Q Consensus 173 ~V~D~~tlk~i~~~~~~~~EGWGLT~--Dg~~L~v-SDGS~~L~viD 216 (276)
-+|+.. +..+.|..|..-=|..+- +|+.... |||-=+|+-.|
T Consensus 244 riW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 244 RIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred EEeecC--ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEec
Confidence 999988 777778877557788653 4444433 66644444444
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=88.72 E-value=2.7 Score=43.12 Aligned_cols=115 Identities=16% Similarity=0.213 Sum_probs=73.4
Q ss_pred ecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcE--EEEeecCCCceEEEEEEeC-CEEEEEE------eeCC
Q 023864 100 PHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKV--EAINQMEGSYFGEGLTLLG-EKLFQVT------WLQK 170 (276)
Q Consensus 100 Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv--~~~~~l~~~~FgEGit~~g-~~LyqlT------wk~~ 170 (276)
.|++..=+--+.|+.||+.+.|-| +++.+.+||+.+-+- ....-|+..+=+.-+.+.. ++|.+.- -..+
T Consensus 360 AH~~g~~Itsi~FS~dg~~LlSRg--~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g 437 (641)
T KOG0772|consen 360 AHLPGQDITSISFSYDGNYLLSRG--FDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAG 437 (641)
T ss_pred ccCCCCceeEEEeccccchhhhcc--CCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCc
Confidence 377777778899999999888888 899999999998652 2223344332233344443 4444332 2457
Q ss_pred EEEEEeCCCCcEEEEEecCCCCeeEEe---eCCCEEEEEC--CCceEEEEcCC
Q 023864 171 TGFIYDQNNLNKLEEFTHQMKDGWGLA---TDGKVLFGSD--GSSMLYQIDPQ 218 (276)
Q Consensus 171 ~v~V~D~~tlk~i~~~~~~~~EGWGLT---~Dg~~L~vSD--GS~~L~viDp~ 218 (276)
++++||+.||+.+.++.+.. -..--| +-=..++++- |...||+ ||.
T Consensus 438 ~L~f~d~~t~d~v~ki~i~~-aSvv~~~WhpkLNQi~~gsgdG~~~vyY-dp~ 488 (641)
T KOG0772|consen 438 TLFFFDRMTLDTVYKIDIST-ASVVRCLWHPKLNQIFAGSGDGTAHVYY-DPN 488 (641)
T ss_pred eEEEEeccceeeEEEecCCC-ceEEEEeecchhhheeeecCCCceEEEE-Ccc
Confidence 89999999999999998861 222212 1123566644 5555553 665
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=88.60 E-value=4.4 Score=42.83 Aligned_cols=108 Identities=16% Similarity=0.117 Sum_probs=73.7
Q ss_pred EEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEEEEEeeCCEEEEEeCCCCcEEEEEe
Q 023864 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNKLEEFT 187 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~LyqlTwk~~~v~V~D~~tlk~i~~~~ 187 (276)
-..|+|+ .=|..||- -+-.||.||.-+|..++.. .+..-=-+.+++.. ++--..-=.++.+.+||..+.+.++++.
T Consensus 540 cv~FHPN-s~Y~aTGS-sD~tVRlWDv~~G~~VRiF-~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~ 616 (707)
T KOG0263|consen 540 CVSFHPN-SNYVATGS-SDRTVRLWDVSTGNSVRIF-TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK 616 (707)
T ss_pred eEEECCc-ccccccCC-CCceEEEEEcCCCcEEEEe-cCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh
Confidence 3678885 44455772 4567999999999875543 34322235566654 4444444578999999999999888875
Q ss_pred cCCCCeeE--EeeCCCEEEEECCCceEEEEcCCC
Q 023864 188 HQMKDGWG--LATDGKVLFGSDGSSMLYQIDPQT 219 (276)
Q Consensus 188 ~~~~EGWG--LT~Dg~~L~vSDGS~~L~viDp~t 219 (276)
-..+-+.. ++.||..|.+.-+.++|.++|...
T Consensus 617 ~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 617 GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred cccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 32223333 567998888777899999999654
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.44 E-value=16 Score=38.95 Aligned_cols=152 Identities=14% Similarity=0.119 Sum_probs=91.0
Q ss_pred eEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeCCEEEEEeCCCCcEEEE
Q 023864 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLNKLEE 185 (276)
Q Consensus 108 QGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~~~v~V~D~~tlk~i~~ 185 (276)
--|-++.++.|+ |+. =+-.|+-|++...+=+... --.-|-.-+++. +|+.|+--=.++++-+|+.-..++.--
T Consensus 373 LDlSWSKn~fLL-SSS--MDKTVRLWh~~~~~CL~~F--~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W 447 (712)
T KOG0283|consen 373 LDLSWSKNNFLL-SSS--MDKTVRLWHPGRKECLKVF--SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDW 447 (712)
T ss_pred eecccccCCeeE-ecc--ccccEEeecCCCcceeeEE--ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEee
Confidence 356778766666 455 4678999999876533321 112233333332 344444444455555555555554433
Q ss_pred EecC-CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeC-C--EeeeeeeeeEEECC---EEEEEeCCCCCe
Q 023864 186 FTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYK-G--REVRNLNELEFIKG---EVWANVWQVWPC 258 (276)
Q Consensus 186 ~~~~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~-g--~pv~~lNELE~idG---~lyANvw~s~d~ 258 (276)
.... +---.-++|||+..+|.--.....|+|...++.+....|... + ..-+.+.-|++.-| +|.|.- .+ ..
T Consensus 448 ~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTS-nD-Sr 525 (712)
T KOG0283|consen 448 NDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTS-ND-SR 525 (712)
T ss_pred hhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEec-CC-Cc
Confidence 3221 112224678999988877677888999999999888777652 1 11124556677633 677776 44 78
Q ss_pred EEEEeCCC
Q 023864 259 IPYAYLQA 266 (276)
Q Consensus 259 I~vIDp~T 266 (276)
|-++|..+
T Consensus 526 IRI~d~~~ 533 (712)
T KOG0283|consen 526 IRIYDGRD 533 (712)
T ss_pred eEEEeccc
Confidence 99999855
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=88.23 E-value=1 Score=46.03 Aligned_cols=135 Identities=16% Similarity=0.209 Sum_probs=83.7
Q ss_pred eeEEEEEEecC-CCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC-CceEEEEE---Ee-CCEEEEE
Q 023864 92 TIQVVNEFPHD-PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG-SYFGEGLT---LL-GEKLFQV 165 (276)
Q Consensus 92 t~~Vv~~~Phd-~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~-~~FgEGit---~~-g~~Lyql 165 (276)
..+|+.+.+.. ..--.+--+|++||.++. +| ..+.+|..||.....+.-.+.+.. +.=|.+|| +. +++...-
T Consensus 304 q~qVik~k~~~g~Rv~~tsC~~nrdg~~iA-ag-c~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlS 381 (641)
T KOG0772|consen 304 QLQVIKTKPAGGKRVPVTSCAWNRDGKLIA-AG-CLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLS 381 (641)
T ss_pred heeEEeeccCCCcccCceeeecCCCcchhh-hc-ccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhh
Confidence 44666666543 122234457889999963 44 689999999986554433333221 22233333 22 2333333
Q ss_pred EeeCCEEEEEeCCCCcE-EEEE-----ecCCCCeeEEeeCCCEEEEE------CCCceEEEEcCCCCcEEEEEEee
Q 023864 166 TWLQKTGFIYDQNNLNK-LEEF-----THQMKDGWGLATDGKVLFGS------DGSSMLYQIDPQTLKVIRKDIVR 229 (276)
Q Consensus 166 Twk~~~v~V~D~~tlk~-i~~~-----~~~~~EGWGLT~Dg~~L~vS------DGS~~L~viDp~t~~vi~~I~V~ 229 (276)
--.++.+-+||...+++ +..+ +|+ .--.+++||.+.++.. +++..|+|+|+.||..+.+|.+.
T Consensus 382 Rg~D~tLKvWDLrq~kkpL~~~tgL~t~~~-~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~ 456 (641)
T KOG0772|consen 382 RGFDDTLKVWDLRQFKKPLNVRTGLPTPFP-GTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS 456 (641)
T ss_pred ccCCCceeeeeccccccchhhhcCCCccCC-CCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC
Confidence 34678888999987764 3332 133 3456788988777652 23668999999999999999886
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.09 E-value=11 Score=39.71 Aligned_cols=125 Identities=19% Similarity=0.267 Sum_probs=87.4
Q ss_pred CCCCceEEEE-ecCCEEEEEcCCCCCCeEEEEeCCCC--cEEEEe------ecC--C--CceEEEEEEe-CCEEEEEEee
Q 023864 103 PRAFTQGLLY-AENDTLFESTGLYGRSSVRRVALETG--KVEAIN------QME--G--SYFGEGLTLL-GEKLFQVTWL 168 (276)
Q Consensus 103 ~~aFTQGL~~-~~dg~LyeStG~yg~S~I~~iDl~tg--kv~~~~------~l~--~--~~FgEGit~~-g~~LyqlTwk 168 (276)
...|++.|++ .++..|+.|+|+ +-.|..||..+| +++.+. .++ + ..| .++.- ++.+++.-=-
T Consensus 116 H~DYVkcla~~ak~~~lvaSgGL--D~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siY--SLA~N~t~t~ivsGgt 191 (735)
T KOG0308|consen 116 HKDYVKCLAYIAKNNELVASGGL--DRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIY--SLAMNQTGTIIVSGGT 191 (735)
T ss_pred ccchheeeeecccCceeEEecCC--CccEEEEEccCcchhhhhhccccccccCCCCCcccee--eeecCCcceEEEecCc
Confidence 4678999999 777889999995 567999999988 222221 222 1 223 22222 2357777777
Q ss_pred CCEEEEEeCCCCcEEEEEecCCCCeeE---EeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCC
Q 023864 169 QKTGFIYDQNNLNKLEEFTHQMKDGWG---LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKG 232 (276)
Q Consensus 169 ~~~v~V~D~~tlk~i~~~~~~~~EGWG---LT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g 232 (276)
++.+-+||+.|.+.+-.+. +..+..- +..||.+++-+-.+..|.++|..-.+-+.+..|..+|
T Consensus 192 ek~lr~wDprt~~kimkLr-GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~ 257 (735)
T KOG0308|consen 192 EKDLRLWDPRTCKKIMKLR-GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEG 257 (735)
T ss_pred ccceEEeccccccceeeee-ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCc
Confidence 8899999999999988876 2233333 4567777766545678889999888888888888766
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.03 E-value=9.7 Score=39.72 Aligned_cols=175 Identities=14% Similarity=0.169 Sum_probs=112.6
Q ss_pred eeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecC-----------------------
Q 023864 91 YTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME----------------------- 147 (276)
Q Consensus 91 ~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~----------------------- 147 (276)
..+++++.+-| +.+- --+-+++||+-..+||-| .-.|++||+.+-.+.-.--++
T Consensus 40 ~rieLiQdfe~-p~as-t~ik~s~DGqY~lAtG~Y-KP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR 116 (703)
T KOG2321|consen 40 QRIELIQDFEM-PTAS-TRIKVSPDGQYLLATGTY-KPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDR 116 (703)
T ss_pred HHHHHHHhcCC-cccc-ceeEecCCCcEEEEeccc-CCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCc
Confidence 45678888887 3443 467888999977789975 458999999864321111111
Q ss_pred --------CCc-------eEEEEEEeC--CEEEEEEeeCCEEEEEeCCCCcEEEEEecCCCCeeEEeeCC-CEEEEECC-
Q 023864 148 --------GSY-------FGEGLTLLG--EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDG-KVLFGSDG- 208 (276)
Q Consensus 148 --------~~~-------FgEGit~~g--~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~EGWGLT~Dg-~~L~vSDG- 208 (276)
... ||--++.+- -.||.+- -+..+|.++.+..+-+..|....++=|-+.-+. ..|++.-|
T Consensus 117 ~IefHak~G~hy~~RIP~~GRDm~y~~~scDly~~g-sg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~ 195 (703)
T KOG2321|consen 117 TIEFHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVG-SGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTE 195 (703)
T ss_pred eeeehhhcCeeeeeecCcCCccccccCCCccEEEee-cCcceEEEEccccccccccccccccceeeeecCccceEEeccc
Confidence 001 333344332 2444433 256788888888888888877644555544333 34555444
Q ss_pred CceEEEEcCCCCcEEEEEEeeeC------CEeeeeeeeeEEECCEEEEEeCCCCCeEEEEeCCCCcE
Q 023864 209 SSMLYQIDPQTLKVIRKDIVRYK------GREVRNLNELEFIKGEVWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 209 S~~L~viDp~t~~vi~~I~V~~~------g~pv~~lNELE~idG~lyANvw~s~d~I~vIDp~T~~v 269 (276)
...|-||||.+-..++++.+... +.....+.-+.|.|.-|=++|..+...|..-|..+-+.
T Consensus 196 ~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p 262 (703)
T KOG2321|consen 196 DGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP 262 (703)
T ss_pred CceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc
Confidence 78999999999999999888642 22223355567888777778877756788888877543
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.74 E-value=21 Score=38.82 Aligned_cols=151 Identities=11% Similarity=0.043 Sum_probs=94.8
Q ss_pred eEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEe-ecCCCceEEEEEEe-CCEEEEEEeeCCEEEEEeCCCCcEEEE
Q 023864 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAIN-QMEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNLNKLEE 185 (276)
Q Consensus 108 QGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~-~l~~~~FgEGit~~-g~~LyqlTwk~~~v~V~D~~tlk~i~~ 185 (276)
.-++|+++|.+...+| .+-.|..++..++..+... ..... --+++++ ++.+..+.--+|++.+||..++.+..+
T Consensus 100 r~~~v~g~g~~iaags--dD~~vK~~~~~D~s~~~~lrgh~ap--Vl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~t 175 (933)
T KOG1274|consen 100 RDLAVSGSGKMIAAGS--DDTAVKLLNLDDSSQEKVLRGHDAP--VLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKT 175 (933)
T ss_pred eEEEEecCCcEEEeec--CceeEEEEeccccchheeecccCCc--eeeeeEcCCCCEEEEEecCceEEEEEcccchhhhh
Confidence 3678888888876555 5556777777765432222 12211 1355555 356666667789999999999888776
Q ss_pred Eec-------CCCCeeE---EeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCC
Q 023864 186 FTH-------QMKDGWG---LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQ 254 (276)
Q Consensus 186 ~~~-------~~~EGWG---LT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~ 254 (276)
++- ...+-++ -.|+|..|.+---.+.|.++++++.....+..-..... .++.+.|. +|+-.|+.-.
T Consensus 176 l~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss---~~~~~~wsPnG~YiAAs~~ 252 (933)
T KOG1274|consen 176 LTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSS---KFSDLQWSPNGKYIAASTL 252 (933)
T ss_pred cccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccccccc---ceEEEEEcCCCcEEeeecc
Confidence 641 0011222 35786655554446889999999988776665443111 25666666 5666677767
Q ss_pred CCCeEEEEeCCC
Q 023864 255 VWPCIPYAYLQA 266 (276)
Q Consensus 255 s~d~I~vIDp~T 266 (276)
. +.|+|-|.+|
T Consensus 253 ~-g~I~vWnv~t 263 (933)
T KOG1274|consen 253 D-GQILVWNVDT 263 (933)
T ss_pred C-CcEEEEeccc
Confidence 7 8888888774
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.67 E-value=5.7 Score=37.44 Aligned_cols=131 Identities=20% Similarity=0.161 Sum_probs=89.2
Q ss_pred eeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCC
Q 023864 91 YTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK 170 (276)
Q Consensus 91 ~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~ 170 (276)
.|-+|+..+.- ..+=+.-+.|..+..+..|++ -+++++.||-.+......+-++...=|.---...++..+.---++
T Consensus 89 ~TGkv~Rr~rg-H~aqVNtV~fNeesSVv~Sgs--fD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DG 165 (307)
T KOG0316|consen 89 NTGKVDRRFRG-HLAQVNTVRFNEESSVVASGS--FDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDG 165 (307)
T ss_pred ccCeeeeeccc-ccceeeEEEecCcceEEEecc--ccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCC
Confidence 35678888752 244456778876566777777 789999999887765444334432111111223577778888899
Q ss_pred EEEEEeCCCCcEEEEE-ecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEE
Q 023864 171 TGFIYDQNNLNKLEEF-THQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRK 225 (276)
Q Consensus 171 ~v~V~D~~tlk~i~~~-~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~ 225 (276)
++-.||....+....+ ..| -...-+++||..+.++-=.+.|..+|-+|+++++.
T Consensus 166 tvRtydiR~G~l~sDy~g~p-it~vs~s~d~nc~La~~l~stlrLlDk~tGklL~s 220 (307)
T KOG0316|consen 166 TVRTYDIRKGTLSSDYFGHP-ITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKS 220 (307)
T ss_pred cEEEEEeecceeehhhcCCc-ceeEEecCCCCEEEEeeccceeeecccchhHHHHH
Confidence 9999998766654332 122 13345889999999988888999999999988643
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=87.61 E-value=2.7 Score=43.10 Aligned_cols=165 Identities=15% Similarity=0.168 Sum_probs=99.7
Q ss_pred EEEEEEecCCCCCceEEEEecC-CEEEEEcCCCCCCeEEEEeCCCC---cEEEEee-cCCCceEEEEEEe-CCEEEEEEe
Q 023864 94 QVVNEFPHDPRAFTQGLLYAEN-DTLFESTGLYGRSSVRRVALETG---KVEAINQ-MEGSYFGEGLTLL-GEKLFQVTW 167 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~d-g~LyeStG~yg~S~I~~iDl~tg---kv~~~~~-l~~~~FgEGit~~-g~~LyqlTw 167 (276)
+-++++.|. --+-..++++. .++| || |+..|.+||+..- -.+...+ +...-|=-.+-+. +++-..+--
T Consensus 411 rq~~tL~HG--EvVcAvtIS~~trhVy--Tg--GkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGG 484 (705)
T KOG0639|consen 411 RQINTLAHG--EVVCAVTISNPTRHVY--TG--GKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGG 484 (705)
T ss_pred HhhhhhccC--cEEEEEEecCCcceeE--ec--CCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecc
Confidence 344555552 22234566654 4588 88 9999999998532 1111211 2123333334443 333333334
Q ss_pred eCCEEEEEeCC--CCcEEEEEecCCCCeeE--EeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEE
Q 023864 168 LQKTGFIYDQN--NLNKLEEFTHQMKDGWG--LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEF 243 (276)
Q Consensus 168 k~~~v~V~D~~--tlk~i~~~~~~~~EGWG--LT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~ 243 (276)
...++.|||.+ |.++..+.+-..+..++ +.+|-+..|.+-.+..|.++|..+..+++..+-..+|-..-.+ -
T Consensus 485 eastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdi----s 560 (705)
T KOG0639|consen 485 EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI----S 560 (705)
T ss_pred ccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEe----c
Confidence 47889999986 55555666543345555 5689999999888889999999999888887766555432111 1
Q ss_pred ECC-EEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 244 IKG-EVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 244 idG-~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
.|| +||-.= .+ |+|---|..+++..
T Consensus 561 ~dGtklWTGG-lD-ntvRcWDlregrql 586 (705)
T KOG0639|consen 561 KDGTKLWTGG-LD-NTVRCWDLREGRQL 586 (705)
T ss_pred CCCceeecCC-Cc-cceeehhhhhhhhh
Confidence 156 477432 34 77777777776643
|
|
| >PLN02258 9-cis-epoxycarotenoid dioxygenase NCED | Back alignment and domain information |
|---|
Probab=87.54 E-value=17 Score=37.83 Aligned_cols=104 Identities=17% Similarity=0.309 Sum_probs=63.7
Q ss_pred CCCCCCCCceeeeEEEEEEecCCCCCceEEEEecC-CEEEEEcCCC----CCCeEEEEeCCCCcEEEEe-----------
Q 023864 81 FPGVDQSPSIYTIQVVNEFPHDPRAFTQGLLYAEN-DTLFESTGLY----GRSSVRRVALETGKVEAIN----------- 144 (276)
Q Consensus 81 ~~~~~~~~~~~t~~Vv~~~Phd~~aFTQGL~~~~d-g~LyeStG~y----g~S~I~~iDl~tgkv~~~~----------- 144 (276)
+..++.++.....+|..++|.+ ..|-.+-+. +.+|+..+.| |+..|+.+.++.|++..+-
T Consensus 119 faPv~ee~~~~~l~V~G~IP~~----L~Gty~RNGPnp~f~p~~~~H~FDGDGMvhav~f~dG~a~y~~RfVrT~~~~~E 194 (590)
T PLN02258 119 FAPVPEQPVRHNLPVTGRIPDC----IDGVYVRNGANPLFEPVAGHHLFDGDGMVHAVRIGNGSASYACRFTETNRLVQE 194 (590)
T ss_pred CcCccccCCcccceEEeeCCCC----CCeEEEEeCCCCCCCCCCCCccccCCceEEEEEECCCeEEEEeeeecchhHHHH
Confidence 3344555666677888888853 267666532 3355433322 6778999888888753321
Q ss_pred -ecCCCce-------------------------------------EEEEEEeCCEEEEEEeeCCEEEEEeCC---CCcEE
Q 023864 145 -QMEGSYF-------------------------------------GEGLTLLGEKLFQVTWLQKTGFIYDQN---NLNKL 183 (276)
Q Consensus 145 -~l~~~~F-------------------------------------gEGit~~g~~LyqlTwk~~~v~V~D~~---tlk~i 183 (276)
..+...| -.++..++++||. -|.++.-+.+|.+ ||+.+
T Consensus 195 ~~agr~l~~~~~g~~~~~~g~~r~~~~~~r~~~~~~d~~~~~~~ANT~vv~~~grLlA-L~E~g~Py~l~~d~~~TLeT~ 273 (590)
T PLN02258 195 RALGRPVFPKAIGELHGHSGIARLMLFYARGLFGLVDASRGTGVANAGLVYFNGRLLA-MSEDDLPYQVRITGDGDLETV 273 (590)
T ss_pred HhcCCcccccccccccccccccccchhhccccccccccccccCCCceeEEEECCEEEE-EEcCCCceEecCCCCCCcccC
Confidence 1111111 1234455789997 5567788888654 99999
Q ss_pred EEEecC
Q 023864 184 EEFTHQ 189 (276)
Q Consensus 184 ~~~~~~ 189 (276)
+.+.+.
T Consensus 274 G~~df~ 279 (590)
T PLN02258 274 GRYDFD 279 (590)
T ss_pred cccccC
Confidence 988764
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=87.07 E-value=3.9 Score=41.22 Aligned_cols=33 Identities=12% Similarity=0.327 Sum_probs=26.5
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCC
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYG 126 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg 126 (276)
+|+...|....-+...|.|.+||.||.++|.-+
T Consensus 135 ~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g 167 (454)
T TIGR03606 135 DLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQG 167 (454)
T ss_pred EEEecCCCCCCcCCceEEECCCCcEEEEECCCC
Confidence 466677765566778899999999999999754
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.06 E-value=4.4 Score=39.53 Aligned_cols=113 Identities=12% Similarity=0.153 Sum_probs=84.3
Q ss_pred eEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe----CCEEEEEEeeCCEEEEEeCCCCcE
Q 023864 108 QGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL----GEKLFQVTWLQKTGFIYDQNNLNK 182 (276)
Q Consensus 108 QGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~----g~~LyqlTwk~~~v~V~D~~tlk~ 182 (276)
.-|-|+|.|. |.++| ....+|.||.+|-+--.... |..---++++-. .++||+..-++|.+-+||--+.+-
T Consensus 220 rsiSfHPsGefllvgT---dHp~~rlYdv~T~Qcfvsan-Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rC 295 (430)
T KOG0640|consen 220 RSISFHPSGEFLLVGT---DHPTLRLYDVNTYQCFVSAN-PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRC 295 (430)
T ss_pred eeEeecCCCceEEEec---CCCceeEEeccceeEeeecC-cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHH
Confidence 5788898875 55433 67899999999987544433 555556778776 389999999999999999999998
Q ss_pred EEEEecCCCCeeE-----EeeCCCEEEEECCCceEEEEcCCCCcEEEE
Q 023864 183 LEEFTHQMKDGWG-----LATDGKVLFGSDGSSMLYQIDPQTLKVIRK 225 (276)
Q Consensus 183 i~~~~~~~~EGWG-----LT~Dg~~L~vSDGS~~L~viDp~t~~vi~~ 225 (276)
+.+|.-. -.|-. +|.||+++.-|--++.+..+...|++.+++
T Consensus 296 v~t~~~A-H~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~ 342 (430)
T KOG0640|consen 296 VRTIGNA-HGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKE 342 (430)
T ss_pred HHHHHhh-cCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEE
Confidence 8888632 12333 566888887766678888888888876644
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.04 E-value=10 Score=40.37 Aligned_cols=130 Identities=17% Similarity=0.156 Sum_probs=94.0
Q ss_pred eEEEEEEecCCCCCceEEEEecC-CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCE
Q 023864 93 IQVVNEFPHDPRAFTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKT 171 (276)
Q Consensus 93 ~~Vv~~~Phd~~aFTQGL~~~~d-g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~ 171 (276)
-+=+..|-| ..|+--++|.|- ++.|.|+- =+.+||.|++...+|..-..+..-.=+.-.+.+ ++..++--..|.
T Consensus 400 ~~CL~~F~H--ndfVTcVaFnPvDDryFiSGS--LD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~Pd-Gk~avIGt~~G~ 474 (712)
T KOG0283|consen 400 KECLKVFSH--NDFVTCVAFNPVDDRYFISGS--LDGKVRLWSISDKKVVDWNDLRDLITAVCYSPD-GKGAVIGTFNGY 474 (712)
T ss_pred cceeeEEec--CCeeEEEEecccCCCcEeecc--cccceEEeecCcCeeEeehhhhhhheeEEeccC-CceEEEEEeccE
Confidence 356888988 789999999984 67888755 477899999999999887777755444444444 677777778899
Q ss_pred EEEEeCCCCcEEEEEecC--------CC--CeeEEee-CCCEEEEECCCceEEEEcCCCCcEEEEEE
Q 023864 172 GFIYDQNNLNKLEEFTHQ--------MK--DGWGLAT-DGKVLFGSDGSSMLYQIDPQTLKVIRKDI 227 (276)
Q Consensus 172 v~V~D~~tlk~i~~~~~~--------~~--EGWGLT~-Dg~~L~vSDGS~~L~viDp~t~~vi~~I~ 227 (276)
+.+||...++....+... .+ -|.-..+ +-+.+.|+--+++|.++|..+-+++.+.+
T Consensus 475 C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfK 541 (712)
T KOG0283|consen 475 CRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFK 541 (712)
T ss_pred EEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhc
Confidence 999999999988776531 11 1222222 33467787779999999997766655544
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=87.00 E-value=8.8 Score=39.37 Aligned_cols=63 Identities=17% Similarity=-0.006 Sum_probs=46.8
Q ss_pred EEEEEEeeCCEEEEEeCCCCcEEEEE-ecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEE
Q 023864 161 KLFQVTWLQKTGFIYDQNNLNKLEEF-THQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVI 223 (276)
Q Consensus 161 ~LyqlTwk~~~v~V~D~~tlk~i~~~-~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi 223 (276)
.+.+-|..++.+-|||..+.+...-. +.+.-|..++.+|||.+.++|---.|+++|.+|+++.
T Consensus 373 ~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~ 436 (668)
T COG4946 373 GDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR 436 (668)
T ss_pred ceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCee
Confidence 34445556668888888887754332 2344577889999999999998889999999998763
|
|
| >KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.85 E-value=3.4 Score=40.75 Aligned_cols=104 Identities=19% Similarity=0.311 Sum_probs=66.7
Q ss_pred ceEEEEecCC-EEEEEcCCCCCCeEEEEeCCCCcEEEEe-ecCC--CceEEEEEEeC-C---------------EEEEEE
Q 023864 107 TQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAIN-QMEG--SYFGEGLTLLG-E---------------KLFQVT 166 (276)
Q Consensus 107 TQGL~~~~dg-~LyeStG~yg~S~I~~iDl~tgkv~~~~-~l~~--~~FgEGit~~g-~---------------~LyqlT 166 (276)
.-||.|+..| .||++.+-+| |.+++++.|+.+.-. +.+. -.|.-+++++. + -++.+-
T Consensus 117 PLGl~f~~~ggdL~VaDAYlG---L~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l 193 (376)
T KOG1520|consen 117 PLGIRFDKKGGDLYVADAYLG---LLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAAL 193 (376)
T ss_pred cceEEeccCCCeEEEEeccee---eEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeee
Confidence 3499998775 8999877444 788899888632211 1111 23444555543 2 222222
Q ss_pred e--eCCEEEEEeCCCCcE---EEEEecCCCCeeEEeeCCCEEEEEC-CCceEEEE
Q 023864 167 W--LQKTGFIYDQNNLNK---LEEFTHQMKDGWGLATDGKVLFGSD-GSSMLYQI 215 (276)
Q Consensus 167 w--k~~~v~V~D~~tlk~---i~~~~~~~~EGWGLT~Dg~~L~vSD-GS~~L~vi 215 (276)
. ..++++.||+.|... +....++ .|.+|++|+..++++. +..+|..+
T Consensus 194 ~g~~~GRl~~YD~~tK~~~VLld~L~F~--NGlaLS~d~sfvl~~Et~~~ri~ry 246 (376)
T KOG1520|consen 194 EGDPTGRLFRYDPSTKVTKVLLDGLYFP--NGLALSPDGSFVLVAETTTARIKRY 246 (376)
T ss_pred cCCCccceEEecCcccchhhhhhccccc--ccccCCCCCCEEEEEeeccceeeee
Confidence 2 568999999887653 3445554 8999999999999998 45566444
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.68 E-value=1.5 Score=48.10 Aligned_cols=173 Identities=10% Similarity=0.000 Sum_probs=102.9
Q ss_pred eeeEEEEEEecCCCCCceEEEEecC-CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--C---CEEEE
Q 023864 91 YTIQVVNEFPHDPRAFTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--G---EKLFQ 164 (276)
Q Consensus 91 ~t~~Vv~~~Phd~~aFTQGL~~~~d-g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g---~~Lyq 164 (276)
...+++.++.. .+.=+.||.|.+. +.|..|++ +++.|.+||+..-+. -...+...+.+-+... | .+++.
T Consensus 104 ~~~~~la~~~~-h~G~V~gLDfN~~q~nlLASGa--~~geI~iWDlnn~~t--P~~~~~~~~~~eI~~lsWNrkvqhILA 178 (1049)
T KOG0307|consen 104 ASEEVLATKSK-HTGPVLGLDFNPFQGNLLASGA--DDGEILIWDLNKPET--PFTPGSQAPPSEIKCLSWNRKVSHILA 178 (1049)
T ss_pred cchHHHhhhcc-cCCceeeeeccccCCceeeccC--CCCcEEEeccCCcCC--CCCCCCCCCcccceEeccchhhhHHhh
Confidence 35567777753 2344479999887 45888888 899999999986332 1112222233333332 2 46666
Q ss_pred EEeeCCEEEEEeCCCCcEEEEEecCCC-CeeE-E--eeCCC-EEEEECCCc---eEEEEcCCCCc-EEEEEEeeeCCEee
Q 023864 165 VTWLQKTGFIYDQNNLNKLEEFTHQMK-DGWG-L--ATDGK-VLFGSDGSS---MLYQIDPQTLK-VIRKDIVRYKGREV 235 (276)
Q Consensus 165 lTwk~~~v~V~D~~tlk~i~~~~~~~~-EGWG-L--T~Dg~-~L~vSDGS~---~L~viDp~t~~-vi~~I~V~~~g~pv 235 (276)
-.--++++.|+|.+--+++-.+.+..+ -.|- | .||+- .|+++.+++ .|..+|...-. -.+..+. +.-
T Consensus 179 S~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~----H~~ 254 (1049)
T KOG0307|consen 179 SGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEG----HQR 254 (1049)
T ss_pred ccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcc----ccc
Confidence 666778999999988888877776412 2133 3 45554 455544444 55555622111 1111111 211
Q ss_pred eeeeeeEEE--CCEEEEEeCCCCCeEEEEeCCCCcEEEEEEe
Q 023864 236 RNLNELEFI--KGEVWANVWQVWPCIPYAYLQAFGSSLVYVT 275 (276)
Q Consensus 236 ~~lNELE~i--dG~lyANvw~s~d~I~vIDp~T~~v~l~~~~ 275 (276)
.+--|+|- |.++.+.+..+ ++|+.=+++||+ +|+.+.
T Consensus 255 -GilslsWc~~D~~lllSsgkD-~~ii~wN~~tgE-vl~~~p 293 (1049)
T KOG0307|consen 255 -GILSLSWCPQDPRLLLSSGKD-NRIICWNPNTGE-VLGELP 293 (1049)
T ss_pred -ceeeeccCCCCchhhhcccCC-CCeeEecCCCce-EeeecC
Confidence 22234454 55788999888 999999999954 457664
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.45 E-value=12 Score=38.08 Aligned_cols=114 Identities=12% Similarity=0.059 Sum_probs=80.2
Q ss_pred CCCceEEEEecC-CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC---CEEEEEEeeCCEEEEEeCCC
Q 023864 104 RAFTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG---EKLFQVTWLQKTGFIYDQNN 179 (276)
Q Consensus 104 ~aFTQGL~~~~d-g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g---~~LyqlTwk~~~v~V~D~~t 179 (276)
.+-+.-|.|+|= .-|+.++|.-.+..|+.||..+|+.++.+.-+... -.|+... .-+.-.-.-++.+.+|+-.+
T Consensus 343 ~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQV--csL~Wsk~~kEi~sthG~s~n~i~lw~~ps 420 (484)
T KOG0305|consen 343 TAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQV--CSLIWSKKYKELLSTHGYSENQITLWKYPS 420 (484)
T ss_pred ceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCce--eeEEEcCCCCEEEEecCCCCCcEEEEeccc
Confidence 344468888875 34777777556788999999999988887666442 2344432 23444445667899999999
Q ss_pred CcEEEEEec-C-CCCeeEEeeCCCEEEEECCCceEEEEcCCC
Q 023864 180 LNKLEEFTH-Q-MKDGWGLATDGKVLFGSDGSSMLYQIDPQT 219 (276)
Q Consensus 180 lk~i~~~~~-~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t 219 (276)
++++..+.- . .----.++|||..+.+..++++|.|++.=+
T Consensus 421 ~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 421 MKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred cceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 999888751 1 112235789999999999999999987544
|
|
| >PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides | Back alignment and domain information |
|---|
Probab=86.21 E-value=2.1 Score=33.61 Aligned_cols=47 Identities=15% Similarity=0.268 Sum_probs=33.7
Q ss_pred CEEEEEeCCCCcEEE-EEecCCCCeeEEeeCCCEEEEEC-CCceEEEEcCC
Q 023864 170 KTGFIYDQNNLNKLE-EFTHQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQ 218 (276)
Q Consensus 170 ~~v~V~D~~tlk~i~-~~~~~~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~ 218 (276)
+.+.-||+.+.+... .+.. +-|.++++|++.|||++ ....|++..-+
T Consensus 36 ~~Vvyyd~~~~~~va~g~~~--aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 36 GNVVYYDGKEVKVVASGFSF--ANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred ceEEEEeCCEeEEeeccCCC--CceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 344447876655443 2444 48999999999999999 67888887643
|
The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity |
| >KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures] | Back alignment and domain information |
|---|
Probab=86.18 E-value=11 Score=35.30 Aligned_cols=119 Identities=16% Similarity=0.158 Sum_probs=72.8
Q ss_pred EEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceE------------EEEEEeCCEEE
Q 023864 96 VNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFG------------EGLTLLGEKLF 163 (276)
Q Consensus 96 v~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~Fg------------EGit~~g~~Ly 163 (276)
+-.+|+....+ |-.+. +|.+|-- ..+...|.+||++++.+.....+|..-+- .-++++..-||
T Consensus 61 ~~~lp~~~~gT--g~VVy-nGs~yyn--k~~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLW 135 (249)
T KOG3545|consen 61 KYRLPYSWDGT--GHVVY-NGSLYYN--KAGTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLW 135 (249)
T ss_pred EEeCCCCcccc--ceEEE-cceEEee--ccCCcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceeccccee
Confidence 33445533333 44444 3666643 24777899999999888777766632111 23456666677
Q ss_pred EE--EeeCC--EE-EEEeCCCCcEEEEEecC-----CCCeeEEeeCCCEEEEEC----CCceE-EEEcCCCCcE
Q 023864 164 QV--TWLQK--TG-FIYDQNNLNKLEEFTHQ-----MKDGWGLATDGKVLFGSD----GSSML-YQIDPQTLKV 222 (276)
Q Consensus 164 ql--Twk~~--~v-~V~D~~tlk~i~~~~~~-----~~EGWGLT~Dg~~L~vSD----GS~~L-~viDp~t~~v 222 (276)
++ |.+++ .+ ...|+.|++..++..+. .+++|=+| ..||+-+ ++..| +..|..+.+.
T Consensus 136 viYat~~~~g~iv~skLdp~tl~~e~tW~T~~~k~~~~~aF~iC---GvLY~v~S~~~~~~~i~yaydt~~~~~ 206 (249)
T KOG3545|consen 136 VIYATPENAGTIVLSKLDPETLEVERTWNTTLPKRSAGNAFMIC---GVLYVVHSYNCTHTQISYAYDTTTGTQ 206 (249)
T ss_pred EEecccccCCcEEeeccCHHHhheeeeeccccCCCCcCceEEEe---eeeEEEeccccCCceEEEEEEcCCCce
Confidence 65 33332 33 45899999999988532 45777787 3566644 34455 6788887765
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=86.13 E-value=5.3 Score=40.03 Aligned_cols=112 Identities=19% Similarity=0.163 Sum_probs=55.8
Q ss_pred CCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--C-CEEEEEEeeCCEEEEEeCCC
Q 023864 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--G-EKLFQVTWLQKTGFIYDQNN 179 (276)
Q Consensus 103 ~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g-~~LyqlTwk~~~v~V~D~~t 179 (276)
...|.|-|.++|+|+...-+| ++.-..|.... +...-||+|+.+. . ++ |.+--+++++.++.--+
T Consensus 31 ~~~~p~~ls~npngr~v~V~g---~geY~iyt~~~--------~r~k~~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~ 98 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCG---DGEYEIYTALA--------WRNKAFGSGLSFVWSSRNR-YAVLESSSTIKIYKNFK 98 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEE---TTEEEEEETTT--------TEEEEEEE-SEEEE-TSSE-EEEE-TTS-EEEEETTE
T ss_pred CCcCCeeEEECCCCCEEEEEc---CCEEEEEEccC--------CcccccCceeEEEEecCcc-EEEEECCCeEEEEEcCc
Confidence 355688999999987443333 34444444221 1223466665543 3 56 55555588888873222
Q ss_pred CcEEEEEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEee
Q 023864 180 LNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVR 229 (276)
Q Consensus 180 lk~i~~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~ 229 (276)
-+..+.++.+. -.=++-. |..|.++ +++.|.+.|.++.+++++|.|.
T Consensus 99 ~~~~k~i~~~~-~~~~If~-G~LL~~~-~~~~i~~yDw~~~~~i~~i~v~ 145 (443)
T PF04053_consen 99 NEVVKSIKLPF-SVEKIFG-GNLLGVK-SSDFICFYDWETGKLIRRIDVS 145 (443)
T ss_dssp E-TT-----SS--EEEEE--SSSEEEE-ETTEEEEE-TTT--EEEEESS-
T ss_pred cccceEEcCCc-ccceEEc-CcEEEEE-CCCCEEEEEhhHcceeeEEecC
Confidence 22334565441 1223444 7777776 3458999999999999999987
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.90 E-value=37 Score=35.15 Aligned_cols=139 Identities=9% Similarity=-0.013 Sum_probs=90.8
Q ss_pred CCCeEEEEeCCCCcEEEEeecCCCceEEE------EEEe-----------------CCEEEEEEeeCCEEEEEeCCCCcE
Q 023864 126 GRSSVRRVALETGKVEAINQMEGSYFGEG------LTLL-----------------GEKLFQVTWLQKTGFIYDQNNLNK 182 (276)
Q Consensus 126 g~S~I~~iDl~tgkv~~~~~l~~~~FgEG------it~~-----------------g~~LyqlTwk~~~v~V~D~~tlk~ 182 (276)
++..+++||.+++++.....--.+.-|-+ +.+. +.-+.++--..+.+..|+.+..++
T Consensus 13 ~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~i 92 (541)
T KOG4547|consen 13 GDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEI 92 (541)
T ss_pred CCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEecCCeE
Confidence 45689999999998755542111211222 2221 125667777889999999999999
Q ss_pred EEEEecC-CCCeeEEeeCC---CEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCCCCe
Q 023864 183 LEEFTHQ-MKDGWGLATDG---KVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQVWPC 258 (276)
Q Consensus 183 i~~~~~~-~~EGWGLT~Dg---~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s~d~ 258 (276)
..++..+ ..++..-..|+ ..+|-.+++-++-.|++.+.++++...+... ...++----||.+.+.-. -.
T Consensus 93 t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~----~~~sl~is~D~~~l~~as---~~ 165 (541)
T KOG4547|consen 93 TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP----LVSSLCISPDGKILLTAS---RQ 165 (541)
T ss_pred EEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCC----ccceEEEcCCCCEEEecc---ce
Confidence 9998754 22333333333 4567677888999999999999988877631 112211122777776554 45
Q ss_pred EEEEeCCCCcEEE
Q 023864 259 IPYAYLQAFGSSL 271 (276)
Q Consensus 259 I~vIDp~T~~v~l 271 (276)
|.++|.+|+++++
T Consensus 166 ik~~~~~~kevv~ 178 (541)
T KOG4547|consen 166 IKVLDIETKEVVI 178 (541)
T ss_pred EEEEEccCceEEE
Confidence 9999999977664
|
|
| >KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.64 E-value=19 Score=36.15 Aligned_cols=107 Identities=18% Similarity=0.094 Sum_probs=73.0
Q ss_pred CEEEEEcCCC--C--CCeEEEEeCCCCcEEEEe---ecCCCceEEEEEEeCCEEEEEE---e---eCCEEEEEeCCCCcE
Q 023864 116 DTLFESTGLY--G--RSSVRRVALETGKVEAIN---QMEGSYFGEGLTLLGEKLFQVT---W---LQKTGFIYDQNNLNK 182 (276)
Q Consensus 116 g~LyeStG~y--g--~S~I~~iDl~tgkv~~~~---~l~~~~FgEGit~~g~~LyqlT---w---k~~~v~V~D~~tlk~ 182 (276)
.+||.=.|.- . -+.|+.+|+.|++-.... ..|+...+-.++.++++||+.- + ..+.+++||.++.+-
T Consensus 123 ~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W 202 (482)
T KOG0379|consen 123 DKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTW 202 (482)
T ss_pred CeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccc
Confidence 5666544421 1 148999999999754443 3355667788999999999862 2 458899999998874
Q ss_pred EEEE-----ecCCCCeeEEeeCCCEEEEEC-------CCceEEEEcCCCCcEE
Q 023864 183 LEEF-----THQMKDGWGLATDGKVLFGSD-------GSSMLYQIDPQTLKVI 223 (276)
Q Consensus 183 i~~~-----~~~~~EGWGLT~Dg~~L~vSD-------GS~~L~viDp~t~~vi 223 (276)
.+-. |.+ ..|-+++-.++.+|+-= ..+.++.+|..+.+-.
T Consensus 203 ~~~~~~g~~P~p-R~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~ 254 (482)
T KOG0379|consen 203 SELDTQGEAPSP-RYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWK 254 (482)
T ss_pred eecccCCCCCCC-CCCceEEEECCeEEEEeccccCCceecceEeeecccceee
Confidence 3222 233 46677777677666622 2578999999997766
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=85.13 E-value=0.61 Score=45.91 Aligned_cols=49 Identities=18% Similarity=0.303 Sum_probs=40.6
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEee
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQ 145 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~ 145 (276)
-++++|+.....|+-++.+.+ ++++.|+| |++.|+.||..+|+.+...+
T Consensus 184 f~IesfclGH~eFVS~isl~~-~~~LlS~s--GD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 184 FVIESFCLGHKEFVSTISLTD-NYLLLSGS--GDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred cchhhhccccHhheeeeeecc-CceeeecC--CCCcEEEEecccCCcccccc
Confidence 367778877899999999985 66667888 99999999999999876543
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=85.00 E-value=43 Score=33.22 Aligned_cols=139 Identities=14% Similarity=0.122 Sum_probs=78.7
Q ss_pred CCeEEE--EeCCCCcEEEEee----cCCCc-eEEEEEEe----CCEEEEE-EeeCCEEEEEeC---CCC----cEEEEEe
Q 023864 127 RSSVRR--VALETGKVEAINQ----MEGSY-FGEGLTLL----GEKLFQV-TWLQKTGFIYDQ---NNL----NKLEEFT 187 (276)
Q Consensus 127 ~S~I~~--iDl~tgkv~~~~~----l~~~~-FgEGit~~----g~~Lyql-Twk~~~v~V~D~---~tl----k~i~~~~ 187 (276)
.++|+. +|.++|.+..... ++... =..|+++. ++.+|+. +-+++.+-.|-. .+. +++++|.
T Consensus 126 ~n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~ 205 (381)
T PF02333_consen 126 RNSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK 205 (381)
T ss_dssp T-EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE
T ss_pred CCeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec
Confidence 456554 4777786643321 11110 03477775 2466655 567777666533 333 4678887
Q ss_pred cC-CCCeeEEeeCCCEEEEECCCceEEEEcCC--CCcEEEEEEeeeCCEeeeeeeeeEEE-----CCEEEEEeCCCCCeE
Q 023864 188 HQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQ--TLKVIRKDIVRYKGREVRNLNELEFI-----KGEVWANVWQVWPCI 259 (276)
Q Consensus 188 ~~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~--t~~vi~~I~V~~~g~pv~~lNELE~i-----dG~lyANvw~s~d~I 259 (276)
.+ ..||+.....-..||+++..--|+.++.+ ....-..|....+++-..-+.-|..+ +|+|.|..=+. |..
T Consensus 206 ~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~-~sf 284 (381)
T PF02333_consen 206 VGSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGD-NSF 284 (381)
T ss_dssp -SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGG-TEE
T ss_pred CCCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCC-CeE
Confidence 65 56888888778899999988999999865 33332334332222222233333332 35799999677 899
Q ss_pred EEEeCCC
Q 023864 260 PYAYLQA 266 (276)
Q Consensus 260 ~vIDp~T 266 (276)
.|-|-+.
T Consensus 285 ~Vy~r~~ 291 (381)
T PF02333_consen 285 AVYDREG 291 (381)
T ss_dssp EEEESST
T ss_pred EEEecCC
Confidence 9998775
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=84.95 E-value=31 Score=32.69 Aligned_cols=136 Identities=19% Similarity=0.203 Sum_probs=73.3
Q ss_pred CeEEEEeCCCCcEEEEe-e---cCCCceEEEEEEeC-CEEEEEEeeC-----CEEEEEeCCCCcEEEEEecCCCCee---
Q 023864 128 SSVRRVALETGKVEAIN-Q---MEGSYFGEGLTLLG-EKLFQVTWLQ-----KTGFIYDQNNLNKLEEFTHQMKDGW--- 194 (276)
Q Consensus 128 S~I~~iDl~tgkv~~~~-~---l~~~~FgEGit~~g-~~LyqlTwk~-----~~v~V~D~~tlk~i~~~~~~~~EGW--- 194 (276)
-++.++|++++++.... + .+..++--.+...+ ++-+.+.|.+ -.+.++|+.+.+....+.. ..+||
T Consensus 158 v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e-~~~~Wv~~ 236 (353)
T PF00930_consen 158 VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEE-TSDGWVDV 236 (353)
T ss_dssp EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEE-ESSSSSSS
T ss_pred eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEe-cCCcceee
Confidence 45677899888764221 2 12344444555544 4424455533 3567789877654332221 13455
Q ss_pred ----EEe-eCC-CEEEEEC--CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEE-EEeC---CCCCeEEEE
Q 023864 195 ----GLA-TDG-KVLFGSD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVW-ANVW---QVWPCIPYA 262 (276)
Q Consensus 195 ----GLT-~Dg-~~L~vSD--GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~ly-ANvw---~s~d~I~vI 262 (276)
.+. +|+ ..|++++ |-..|+.+|.++.+.. .++.+.-.|..+....-.++.|| .+.- .. -.|.++
T Consensus 237 ~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~---~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~-r~lY~v 312 (353)
T PF00930_consen 237 YDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR---QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGE-RHLYRV 312 (353)
T ss_dssp SSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE---ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTS-BEEEEE
T ss_pred ecccccccCCCCEEEEEEEcCCCcEEEEEccccccee---ccccCceeecccceEcCCCCEEEEEecCCCCCc-eEEEEE
Confidence 232 455 4677776 7889999999887633 44443344433332223356776 3332 23 488888
Q ss_pred eCC-CCc
Q 023864 263 YLQ-AFG 268 (276)
Q Consensus 263 Dp~-T~~ 268 (276)
+.+ .++
T Consensus 313 ~~~~~~~ 319 (353)
T PF00930_consen 313 SLDSGGE 319 (353)
T ss_dssp ETTETTE
T ss_pred EeCCCCC
Confidence 888 543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=84.79 E-value=11 Score=37.85 Aligned_cols=104 Identities=18% Similarity=0.136 Sum_probs=56.8
Q ss_pred CCEEEEEEe----eCCEEEEEeCCCCcEEEEEecCCC-Ce-eEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCC
Q 023864 159 GEKLFQVTW----LQKTGFIYDQNNLNKLEEFTHQMK-DG-WGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKG 232 (276)
Q Consensus 159 g~~LyqlTw----k~~~v~V~D~~tlk~i~~~~~~~~-EG-WGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g 232 (276)
.+.||.++. .....+.+|. ...+...++.... .. .-..+||..|+.+. ..+..+|.- ++++.......+.
T Consensus 113 ~~gl~~~~~~~~~~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~ 188 (477)
T PF05935_consen 113 EDGLYFVNGNDWDSSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGY 188 (477)
T ss_dssp TT-EEEEEETT--BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTE
T ss_pred CCcEEEEeCCCCCCCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcc
Confidence 478898888 7788999994 5567777775511 11 24677888888876 999999975 7787776664322
Q ss_pred Eeeeeeeee-EEECCEEEEEeC-------------CCCCeEEEEeCCCCcEE
Q 023864 233 REVRNLNEL-EFIKGEVWANVW-------------QVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 233 ~pv~~lNEL-E~idG~lyANvw-------------~s~d~I~vIDp~T~~v~ 270 (276)
..++| |+ +.-||.+.+-.| .. |.|+.|| .+|+++
T Consensus 189 ~~~HH--D~~~l~nGn~L~l~~~~~~~~~~~~~~~~~-D~Ivevd-~tG~vv 236 (477)
T PF05935_consen 189 YDFHH--DIDELPNGNLLILASETKYVDEDKDVDTVE-DVIVEVD-PTGEVV 236 (477)
T ss_dssp E-B-S---EEE-TTS-EEEEEEETTEE-TS-EE---S--EEEEE--TTS-EE
T ss_pred ccccc--ccEECCCCCEEEEEeecccccCCCCccEec-CEEEEEC-CCCCEE
Confidence 12221 11 123776554444 15 8999999 897765
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.34 E-value=26 Score=30.19 Aligned_cols=157 Identities=15% Similarity=0.112 Sum_probs=96.6
Q ss_pred CCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEEEEE-eeCCEEEEEeCCCC
Q 023864 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVT-WLQKTGFIYDQNNL 180 (276)
Q Consensus 103 ~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~LyqlT-wk~~~v~V~D~~tl 180 (276)
.....+.+.|++++..+.+++. .+..+..||..+++.+..... ......+++... +..+.++ -.++.+.+||..+.
T Consensus 154 ~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~ 231 (466)
T COG2319 154 HSESVTSLAFSPDGKLLASGSS-LDGTIKLWDLRTGKPLSTLAG-HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG 231 (466)
T ss_pred CcccEEEEEECCCCCEEEecCC-CCCceEEEEcCCCceEEeecc-CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC
Confidence 3455579999999875555552 488999999998777666554 233344555543 3345555 77888888898877
Q ss_pred cEEE-EEecCCCCe-e-EEeeCCCEEEEECCCceEEEEcCCCCcE-EEEEEeeeCCEeeeeeeeeEEEC-CEEEEEeCCC
Q 023864 181 NKLE-EFTHQMKDG-W-GLATDGKVLFGSDGSSMLYQIDPQTLKV-IRKDIVRYKGREVRNLNELEFIK-GEVWANVWQV 255 (276)
Q Consensus 181 k~i~-~~~~~~~EG-W-GLT~Dg~~L~vSDGS~~L~viDp~t~~v-i~~I~V~~~g~pv~~lNELE~id-G~lyANvw~s 255 (276)
+.+. .+... ... . -+++++..+........+.++|...... .... . ++ -..++++++.. +..++.....
T Consensus 232 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~--~~-~~~v~~~~~~~~~~~~~~~~~d 305 (466)
T COG2319 232 KLLRSTLSGH-SDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--S--GH-SSSVLSVAFSPDGKLLASGSSD 305 (466)
T ss_pred cEEeeecCCC-CcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--e--cC-CccEEEEEECCCCCEEEEeeCC
Confidence 7777 45432 122 3 4778886666555688899999887765 2222 1 11 23445555653 4444444444
Q ss_pred CCeEEEEeCCCCc
Q 023864 256 WPCIPYAYLQAFG 268 (276)
Q Consensus 256 ~d~I~vIDp~T~~ 268 (276)
..+..-|..++.
T Consensus 306 -~~~~~~~~~~~~ 317 (466)
T COG2319 306 -GTVRLWDLETGK 317 (466)
T ss_pred -CcEEEEEcCCCc
Confidence 444444666644
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=84.31 E-value=7.6 Score=36.00 Aligned_cols=131 Identities=15% Similarity=0.137 Sum_probs=81.0
Q ss_pred EEecCCCCCceEEEEecCCEEEEEcCCC-CCCeEEEEeCCC----CcEEEEe-ecC-CCceEEEEEEeCCEEEEEEeeCC
Q 023864 98 EFPHDPRAFTQGLLYAENDTLFESTGLY-GRSSVRRVALET----GKVEAIN-QME-GSYFGEGLTLLGEKLFQVTWLQK 170 (276)
Q Consensus 98 ~~Phd~~aFTQGL~~~~dg~LyeStG~y-g~S~I~~iDl~t----gkv~~~~-~l~-~~~FgEGit~~g~~LyqlTwk~~ 170 (276)
.++.....|.-|=.+.+||+|+...|.. |...++.+++.+ .+..... .|- .+-|+--.++-+++++++-=..+
T Consensus 60 pl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~ 139 (243)
T PF07250_consen 60 PLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNN 139 (243)
T ss_pred eccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCC
Confidence 3445678999999999999988655532 557799999876 2222221 233 46788888888888888876554
Q ss_pred EEEEEeCC-CC-cEEEEEecC----CCCeeE------EeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeee
Q 023864 171 TGFIYDQN-NL-NKLEEFTHQ----MKDGWG------LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY 230 (276)
Q Consensus 171 ~v~V~D~~-tl-k~i~~~~~~----~~EGWG------LT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~ 230 (276)
--+-+-+. .. .....+++- ...++. |.+||+.++.++-... ++|+.+.++++++.--.
T Consensus 140 ~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~--i~d~~~n~v~~~lP~lP 209 (243)
T PF07250_consen 140 PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSI--IYDYKTNTVVRTLPDLP 209 (243)
T ss_pred CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcE--EEeCCCCeEEeeCCCCC
Confidence 44444333 11 111111100 011222 6789999888885444 45999998888766533
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=84.25 E-value=5.9 Score=39.19 Aligned_cols=149 Identities=13% Similarity=0.014 Sum_probs=91.4
Q ss_pred eEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEe
Q 023864 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFT 187 (276)
Q Consensus 108 QGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~ 187 (276)
.-..|+ +++++|+- |+-.|++|+..|++.++.+ ..+--|..+...+++|.+----++++-++|....+.+.-+.
T Consensus 324 NvVdfd--~kyIVsAS--gDRTikvW~~st~efvRtl--~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLe 397 (499)
T KOG0281|consen 324 NVVDFD--DKYIVSAS--GDRTIKVWSTSTCEFVRTL--NGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLE 397 (499)
T ss_pred eeeccc--cceEEEec--CCceEEEEeccceeeehhh--hcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHh
Confidence 444454 56778877 9999999999999988874 44444777777899999999999999999999887655442
Q ss_pred cCCCCee-EEeeCCCEEEEECC-CceEEEEcCCCCcEE----EEEEeeeCCEeeeeeeeeEEECCEEEEEeCCCCCeEEE
Q 023864 188 HQMKDGW-GLATDGKVLFGSDG-SSMLYQIDPQTLKVI----RKDIVRYKGREVRNLNELEFIKGEVWANVWQVWPCIPY 261 (276)
Q Consensus 188 ~~~~EGW-GLT~Dg~~L~vSDG-S~~L~viDp~t~~vi----~~I~V~~~g~pv~~lNELE~idG~lyANvw~s~d~I~v 261 (276)
-- .|=. -+--|.+++ ||-| +.+|.++|.++..-- .++-+...-+--.+.--|.+.+-.|.+.- .+ |.|++
T Consensus 398 GH-EeLvRciRFd~krI-VSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsss-Hd-dtILi 473 (499)
T KOG0281|consen 398 GH-EELVRCIRFDNKRI-VSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSS-HD-DTILI 473 (499)
T ss_pred ch-HHhhhheeecCcee-eeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEecc-CC-CeEEE
Confidence 00 0000 023355554 4443 778888886664321 12211110011112223445555555444 67 88888
Q ss_pred EeCCC
Q 023864 262 AYLQA 266 (276)
Q Consensus 262 IDp~T 266 (276)
=|-..
T Consensus 474 WdFl~ 478 (499)
T KOG0281|consen 474 WDFLN 478 (499)
T ss_pred EEcCC
Confidence 77544
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.75 E-value=28 Score=30.03 Aligned_cols=159 Identities=14% Similarity=0.092 Sum_probs=91.6
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCc-EEEEeec-CC-CceEEEE-EEeCCEEEEE-EeeCCEEEEEeCC
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGK-VEAINQM-EG-SYFGEGL-TLLGEKLFQV-TWLQKTGFIYDQN 178 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgk-v~~~~~l-~~-~~FgEGi-t~~g~~Lyql-Twk~~~v~V~D~~ 178 (276)
.....+..+.+++..+...+ ....+..||...+. ....... .. .....-. ...+..+... ...++.+.++|..
T Consensus 65 ~~~i~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 142 (466)
T COG2319 65 EDSITSIAFSPDGELLLSGS--SDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLS 142 (466)
T ss_pred cceEEEEEECCCCcEEEEec--CCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEec
Confidence 45557888887777666555 67889999998886 3344333 21 1221122 1223324444 3447899999999
Q ss_pred C-CcEEEEEecCCC--CeeEEeeCCCEEEEECC-CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCE-EEEEeC
Q 023864 179 N-LNKLEEFTHQMK--DGWGLATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGE-VWANVW 253 (276)
Q Consensus 179 t-lk~i~~~~~~~~--EGWGLT~Dg~~L~vSDG-S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~-lyANvw 253 (276)
+ .+....+..... ....++++++.++.... ...+.++|..+.+.+..+.-. ..++..+... .+|. +.+...
T Consensus 143 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~--~~~~~~~~~~~ 218 (466)
T COG2319 143 TPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGH--TDPVSSLAFS--PDGGLLIASGS 218 (466)
T ss_pred CCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccC--CCceEEEEEc--CCcceEEEEec
Confidence 8 676666654311 24457788887776654 889999999886666555542 1223322211 2443 444433
Q ss_pred CCCCeEEEEeCCCCcE
Q 023864 254 QVWPCIPYAYLQAFGS 269 (276)
Q Consensus 254 ~s~d~I~vIDp~T~~v 269 (276)
.. ..|.+-|..++.+
T Consensus 219 ~d-~~i~~wd~~~~~~ 233 (466)
T COG2319 219 SD-GTIRLWDLSTGKL 233 (466)
T ss_pred CC-CcEEEEECCCCcE
Confidence 44 5555445554433
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=83.54 E-value=3.5 Score=41.16 Aligned_cols=118 Identities=12% Similarity=0.091 Sum_probs=79.1
Q ss_pred CCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEEEEEeeCCEEEEEeCCCCcEE
Q 023864 105 AFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNKL 183 (276)
Q Consensus 105 aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~LyqlTwk~~~v~V~D~~tlk~i 183 (276)
.=+.+|+|+|++.-|.++- +++.|.+||+.-.+-.+.+ -+.+.=.-.+..+. .-|...-=+++.|-.+|+.+.+.+
T Consensus 181 eaIRdlafSpnDskF~t~S--dDg~ikiWdf~~~kee~vL-~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl 257 (464)
T KOG0284|consen 181 EAIRDLAFSPNDSKFLTCS--DDGTIKIWDFRMPKEERVL-RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCL 257 (464)
T ss_pred hhhheeccCCCCceeEEec--CCCeEEEEeccCCchhhee-ccCCCCcceeccCCccceeEEccCCceeEeecCCCcchh
Confidence 3447999999888888877 9999999999877654443 12232233445554 445555567889999999999988
Q ss_pred EEEecC--CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEE
Q 023864 184 EEFTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRK 225 (276)
Q Consensus 184 ~~~~~~--~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~ 225 (276)
.++..- .--+.-+.+++.+|..---+..+.++|-.+++.+.+
T Consensus 258 ~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~ 301 (464)
T KOG0284|consen 258 ATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFT 301 (464)
T ss_pred hhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHH
Confidence 776421 012223556775555444467889999887776543
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.52 E-value=17 Score=36.12 Aligned_cols=107 Identities=21% Similarity=0.271 Sum_probs=63.7
Q ss_pred CCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEE-----eCCEEEEEEeeCCEEEEEeC
Q 023864 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL-----LGEKLFQVTWLQKTGFIYDQ 177 (276)
Q Consensus 103 ~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~-----~g~~LyqlTwk~~~v~V~D~ 177 (276)
.+..+--|.+.+||..+. +.-||++.|.+||+++|.-+.-.+.+. -|+++ +|+.||.+|- +...-+++.
T Consensus 194 gh~pVtsmqwn~dgt~l~-tAS~gsssi~iWdpdtg~~~pL~~~gl----gg~slLkwSPdgd~lfaAt~-davfrlw~e 267 (445)
T KOG2139|consen 194 GHNPVTSMQWNEDGTILV-TASFGSSSIMIWDPDTGQKIPLIPKGL----GGFSLLKWSPDGDVLFAATC-DAVFRLWQE 267 (445)
T ss_pred CCceeeEEEEcCCCCEEe-ecccCcceEEEEcCCCCCcccccccCC----CceeeEEEcCCCCEEEEecc-cceeeeehh
Confidence 345566789999988765 445899999999999996433222222 25544 3688888774 444555643
Q ss_pred CCCcEEEEEecCCC--CeeEEeeCCCEE-EEECCCceEEEE
Q 023864 178 NNLNKLEEFTHQMK--DGWGLATDGKVL-FGSDGSSMLYQI 215 (276)
Q Consensus 178 ~tlk~i~~~~~~~~--EGWGLT~Dg~~L-~vSDGS~~L~vi 215 (276)
+.-....+.....+ ++-=-+|+|.+| |+.-|+..||-+
T Consensus 268 ~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl 308 (445)
T KOG2139|consen 268 NQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSL 308 (445)
T ss_pred cccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEE
Confidence 32222222222101 111136789876 555699988765
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=83.48 E-value=2.2 Score=43.24 Aligned_cols=115 Identities=10% Similarity=0.080 Sum_probs=83.7
Q ss_pred EEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEE-eC--CEEEEEEeeCCEEEEEeCCCCcEEEE
Q 023864 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL-LG--EKLFQVTWLQKTGFIYDQNNLNKLEE 185 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~-~g--~~LyqlTwk~~~v~V~D~~tlk~i~~ 185 (276)
-|.|-|.-.|+.+++ ....++..|..+|+++..+..+.+.- -.+ .| +-+..+---+|+|..|.|+..+++-.
T Consensus 214 rLeFLPyHfLL~~~~--~~G~L~Y~DVS~GklVa~~~t~~G~~---~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvK 288 (545)
T KOG1272|consen 214 RLEFLPYHFLLVAAS--EAGFLKYQDVSTGKLVASIRTGAGRT---DVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVK 288 (545)
T ss_pred hhcccchhheeeecc--cCCceEEEeechhhhhHHHHccCCcc---chhhcCCccceEEEcCCCceEEecCCCCcchHHH
Confidence 677777556888877 78899999999999988776554311 111 12 56667777899999999999998877
Q ss_pred Ee-cC-CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEe
Q 023864 186 FT-HQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIV 228 (276)
Q Consensus 186 ~~-~~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V 228 (276)
+- +. .--+.++.++|.++..|--+..+-++|..+|....++..
T Consensus 289 iLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 289 ILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred HHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec
Confidence 63 11 125566777777766555588999999999987666655
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.18 E-value=44 Score=31.94 Aligned_cols=170 Identities=16% Similarity=0.146 Sum_probs=107.6
Q ss_pred eeEEEEEEecCCCCCceEEEEecC--CEEEEEcCCCCCCeEEEEeCCCC-cEEEEeecC-CCceEEEEEEeCCEEEEEEe
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAEN--DTLFESTGLYGRSSVRRVALETG-KVEAINQME-GSYFGEGLTLLGEKLFQVTW 167 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~d--g~LyeStG~yg~S~I~~iDl~tg-kv~~~~~l~-~~~FgEGit~~g~~LyqlTw 167 (276)
.++.++.|.....-| ++.++++ ..++... |+.+++.||+.-- +.++..+-- ...|..--...+++.+++.-
T Consensus 50 gi~e~~s~d~~D~Lf--dV~Wse~~e~~~~~a~---GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsS 124 (311)
T KOG0277|consen 50 GIQECQSYDTEDGLF--DVAWSENHENQVIAAS---GDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSS 124 (311)
T ss_pred CeEEEEeeeccccee--EeeecCCCcceEEEEe---cCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeec
Confidence 667889998877888 9999876 4677654 5689999995321 122221111 23343333334567777777
Q ss_pred eCCEEEEEeCCCCcEEEEEecC--CCCeeEEeeCCCEEEEEC-CCceEEEEcCCC-CcEEEEEEeeeCCEeeeeeeeeEE
Q 023864 168 LQKTGFIYDQNNLNKLEEFTHQ--MKDGWGLATDGKVLFGSD-GSSMLYQIDPQT-LKVIRKDIVRYKGREVRNLNELEF 243 (276)
Q Consensus 168 k~~~v~V~D~~tlk~i~~~~~~--~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t-~~vi~~I~V~~~g~pv~~lNELE~ 243 (276)
.++++-++|++-.+-+.+|.-. .-.+-...|--..|+.|- |...+.++|... ++-+- |.+ ++..-|.+
T Consensus 125 WD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~a-------h~~Eil~c 196 (311)
T KOG0277|consen 125 WDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEA-------HNSEILCC 196 (311)
T ss_pred cCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEe-------ccceeEee
Confidence 8899999999988888888621 112334555556677765 777788888432 22211 333 33322333
Q ss_pred E----CCEEEEEeCCCCCeEEEEeCCCCcEEEEEEe
Q 023864 244 I----KGEVWANVWQVWPCIPYAYLQAFGSSLVYVT 275 (276)
Q Consensus 244 i----dG~lyANvw~s~d~I~vIDp~T~~v~l~~~~ 275 (276)
. |..+.|.=... +.|-.=|.+..++.|.+|.
T Consensus 197 dw~ky~~~vl~Tg~vd-~~vr~wDir~~r~pl~eL~ 231 (311)
T KOG0277|consen 197 DWSKYNHNVLATGGVD-NLVRGWDIRNLRTPLFELN 231 (311)
T ss_pred cccccCCcEEEecCCC-ceEEEEehhhccccceeec
Confidence 2 55677776666 8888889999888887764
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.74 E-value=18 Score=39.64 Aligned_cols=121 Identities=14% Similarity=0.140 Sum_probs=81.1
Q ss_pred EEEEEe-cCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEe-eCCEE
Q 023864 95 VVNEFP-HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW-LQKTG 172 (276)
Q Consensus 95 Vv~~~P-hd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTw-k~~~v 172 (276)
++++|. ||. -+.|+.|+|+.-||+|+| .+=.|.+|+..+.+.+.+. ++.-.|---+.++...=|.+.- .++++
T Consensus 43 li~rFdeHdG--pVRgv~FH~~qplFVSGG--DDykIkVWnYk~rrclftL-~GHlDYVRt~~FHheyPWIlSASDDQTI 117 (1202)
T KOG0292|consen 43 LIDRFDEHDG--PVRGVDFHPTQPLFVSGG--DDYKIKVWNYKTRRCLFTL-LGHLDYVRTVFFHHEYPWILSASDDQTI 117 (1202)
T ss_pred HHhhhhccCC--ccceeeecCCCCeEEecC--CccEEEEEecccceehhhh-ccccceeEEeeccCCCceEEEccCCCeE
Confidence 466664 543 346999999888999999 8889999999998876553 2333344455555555555543 34566
Q ss_pred EEEeCCCCcEEEEEecCCCCeeEEee---CCCEEEEECC-CceEEEEcCCCCcE
Q 023864 173 FIYDQNNLNKLEEFTHQMKDGWGLAT---DGKVLFGSDG-SSMLYQIDPQTLKV 222 (276)
Q Consensus 173 ~V~D~~tlk~i~~~~~~~~EGWGLT~---Dg~~L~vSDG-S~~L~viDp~t~~v 222 (276)
-|++-.+.+.+....= -..+-+|. .-+-|+||-. +.+|.++|-.-++.
T Consensus 118 rIWNwqsr~~iavltG--HnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRk 169 (1202)
T KOG0292|consen 118 RIWNWQSRKCIAVLTG--HNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRK 169 (1202)
T ss_pred EEEeccCCceEEEEec--CceEEEeeccCCccceEEEecccceEEEEeecchhc
Confidence 6777777777776652 25566664 3467888764 78899999655443
|
|
| >KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.72 E-value=1.6 Score=46.79 Aligned_cols=159 Identities=11% Similarity=0.113 Sum_probs=95.4
Q ss_pred EEEecCCCCCceEEEEecCCEEE-----EEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCE
Q 023864 97 NEFPHDPRAFTQGLLYAENDTLF-----ESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKT 171 (276)
Q Consensus 97 ~~~Phd~~aFTQGL~~~~dg~Ly-----eStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~ 171 (276)
.+.+-+.+.=.-+|++.. +.|| .+.+.|+...=..||.+-.+.+..-.+|- ++++..+|.+|-.+ ++.
T Consensus 574 ~~~~spe~~~v~~l~~ss-~Slgagl~dgt~a~y~rap~gSwd~ep~~~~~~g~lPv----rsla~~ed~~was~--gG~ 646 (925)
T KOG3522|consen 574 SEPPSPEHESVKLLLFSS-GSLGAGLIDGTLAVYGRAPSGSWDGEPNISIPTGSLPV----RSLAFQEDFVWASE--GGC 646 (925)
T ss_pred ccCCCCchhhhhhhhccc-cccccCccCCccccccCCCCCCCCCCCccccccCCccc----cchhhhhceeeeec--CCc
Confidence 333333333334555553 4455 44445554443347766444333333332 35566677776665 999
Q ss_pred EEEEeCCCCcEEEEEecCCCCeeEEee---CCCEEEE--ECCCceEEEEcCCCCcEEEEEEeee---CCEeeeeeeeeEE
Q 023864 172 GFIYDQNNLNKLEEFTHQMKDGWGLAT---DGKVLFG--SDGSSMLYQIDPQTLKVIRKDIVRY---KGREVRNLNELEF 243 (276)
Q Consensus 172 v~V~D~~tlk~i~~~~~~~~EGWGLT~---Dg~~L~v--SDGS~~L~viDp~t~~vi~~I~V~~---~g~pv~~lNELE~ 243 (276)
|+||...|+...+....-.-|+-.+++ -|.-+|| ++|+.-.++ +.+|+.-...+..-. .+-|++ -|--
T Consensus 647 V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~~rlf-htetl~hlqd~niaT~vt~~lP~~---klls 722 (925)
T KOG3522|consen 647 VHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLF-HTETLWHLQDSNIATSVTVDLPFG---KLLS 722 (925)
T ss_pred eEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEe-cccccCCccccccCcceeecCCCc---cccc
Confidence 999999999888876532247777665 3555666 678777777 888877655554432 222333 3345
Q ss_pred ECCEEEEEeCCCCCeEEEEeCCCCcEEE
Q 023864 244 IKGEVWANVWQVWPCIPYAYLQAFGSSL 271 (276)
Q Consensus 244 idG~lyANvw~s~d~I~vIDp~T~~v~l 271 (276)
+.|++|. . +.|.|.++.|..|.+
T Consensus 723 v~~rl~c----~-gl~~V~~~~~l~v~~ 745 (925)
T KOG3522|consen 723 VPGRLWC----Q-GLLMVLTSLTLLVAL 745 (925)
T ss_pred CCCcccc----c-ceeEEeccceeEEEe
Confidence 6888887 5 889999998855543
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.66 E-value=13 Score=37.79 Aligned_cols=161 Identities=10% Similarity=0.019 Sum_probs=92.4
Q ss_pred CceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcE-EEEeecCC-CceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcE
Q 023864 106 FTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKV-EAINQMEG-SYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNK 182 (276)
Q Consensus 106 FTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv-~~~~~l~~-~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~ 182 (276)
+..++.|..+.. +|. .+.|| ...+||+.+++- .....+-+ +.=+..+-.....++..-=.++++-+||...+..
T Consensus 281 ~fs~~d~~~e~~~vl~-~~~~G--~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~ 357 (498)
T KOG4328|consen 281 WFSSLDFSAESRSVLF-GDNVG--NFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRG 357 (498)
T ss_pred eeeeccccCCCccEEE-eeccc--ceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcC
Confidence 336666665433 333 44567 788899988653 11112221 1111122222345555555678888999888766
Q ss_pred EEE--Ee-cCCCCee---EEeeCCCEEEEECCCceEEEEcC----CCCcEEEEEEeee-CCEeeeeeeeeEEEC--CEEE
Q 023864 183 LEE--FT-HQMKDGW---GLATDGKVLFGSDGSSMLYQIDP----QTLKVIRKDIVRY-KGREVRNLNELEFIK--GEVW 249 (276)
Q Consensus 183 i~~--~~-~~~~EGW---GLT~Dg~~L~vSDGS~~L~viDp----~t~~vi~~I~V~~-~g~pv~~lNELE~id--G~ly 249 (276)
.+. +. ++..--. =++|+|..|..++.+++|.++|. +.+....+|.=.. -|+-+..+ ..+|.- ..|+
T Consensus 358 K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~f-KA~W~P~~~li~ 436 (498)
T KOG4328|consen 358 KASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPF-KAAWDPDYNLIV 436 (498)
T ss_pred CCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccch-hheeCCCccEEE
Confidence 553 21 2211222 27788888888889999999998 5566666665433 22311111 233443 3466
Q ss_pred EEeCCCCCeEEEEeCCCCcEEEE
Q 023864 250 ANVWQVWPCIPYAYLQAFGSSLV 272 (276)
Q Consensus 250 ANvw~s~d~I~vIDp~T~~v~l~ 272 (276)
+.. +. ..|=+||++.++.+..
T Consensus 437 vg~-~~-r~IDv~~~~~~q~v~e 457 (498)
T KOG4328|consen 437 VGR-YP-RPIDVFDGNGGQMVCE 457 (498)
T ss_pred Eec-cC-cceeEEcCCCCEEeee
Confidence 666 44 6799999999775543
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=82.61 E-value=16 Score=34.70 Aligned_cols=95 Identities=15% Similarity=0.193 Sum_probs=52.6
Q ss_pred EEEEecCCEEEEEcCCCCCCeEEEEeCCCCcE---EEEe-ec--CCCceEEEEEEeC-----CEEEEEEeeC--------
Q 023864 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKV---EAIN-QM--EGSYFGEGLTLLG-----EKLFQVTWLQ-------- 169 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv---~~~~-~l--~~~~FgEGit~~g-----~~LyqlTwk~-------- 169 (276)
+|+|.|||+||++. -...|++++ ..|.. +... .+ ...-=--||+++. +.||+..-..
T Consensus 6 ~~a~~pdG~l~v~e---~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 6 SMAFLPDGRLLVAE---RSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEETTSCEEEEE---TTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred EEEEeCCCcEEEEe---CCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 78999999999852 267899999 55554 2222 11 1111225888887 7999887743
Q ss_pred CEEEEEe--CC--CCc----EEEEEec-CCCCe--eE--EeeCCCEEEEECC
Q 023864 170 KTGFIYD--QN--NLN----KLEEFTH-QMKDG--WG--LATDGKVLFGSDG 208 (276)
Q Consensus 170 ~~v~V~D--~~--tlk----~i~~~~~-~~~EG--WG--LT~Dg~~L~vSDG 208 (276)
.++..+. .. ++. ++...+. ..... .+ +.+|| .||+|-|
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G 132 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVG 132 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeC
Confidence 3454443 33 222 2223343 11222 33 56788 9999776
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=82.52 E-value=6.2 Score=41.72 Aligned_cols=110 Identities=14% Similarity=0.200 Sum_probs=68.5
Q ss_pred cCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcE-EEEe--ecCCCceEEEEEEe-CCEEEEEEe----eCCEE
Q 023864 101 HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKV-EAIN--QMEGSYFGEGLTLL-GEKLFQVTW----LQKTG 172 (276)
Q Consensus 101 hd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv-~~~~--~l~~~~FgEGit~~-g~~LyqlTw----k~~~v 172 (276)
|..+-| |+++++||++..+.+ .+..|++|.+..++. ++.- +++.+ |.-|++. ++++.+++- -+..+
T Consensus 719 HtdqIf--~~AWSpdGr~~AtVc--KDg~~rVy~Prs~e~pv~Eg~gpvgtR--gARi~wacdgr~viv~Gfdk~SeRQv 792 (1012)
T KOG1445|consen 719 HTDQIF--GIAWSPDGRRIATVC--KDGTLRVYEPRSREQPVYEGKGPVGTR--GARILWACDGRIVIVVGFDKSSERQV 792 (1012)
T ss_pred CcCcee--EEEECCCCcceeeee--cCceEEEeCCCCCCCccccCCCCccCc--ceeEEEEecCcEEEEecccccchhhh
Confidence 334556 999999999998888 889999999998753 2222 33322 4445442 566666654 34667
Q ss_pred EEEeCCCCc--EEEEEecC-CCCee--EEeeCCCEEEEEC-CCceEEEEc
Q 023864 173 FIYDQNNLN--KLEEFTHQ-MKDGW--GLATDGKVLFGSD-GSSMLYQID 216 (276)
Q Consensus 173 ~V~D~~tlk--~i~~~~~~-~~EGW--GLT~Dg~~L~vSD-GS~~L~viD 216 (276)
.+||+.++. .+.+.-.. .+.-. -..+|-..||++- |+..|+.+.
T Consensus 793 ~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yE 842 (1012)
T KOG1445|consen 793 QMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYE 842 (1012)
T ss_pred hhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEE
Confidence 888887765 34433211 01111 1345777888887 777776543
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=82.45 E-value=9.8 Score=30.00 Aligned_cols=65 Identities=17% Similarity=0.222 Sum_probs=38.6
Q ss_pred EEEEecC-CEEEEEcC--CC-------------CCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCC--EEEEEEeeCC
Q 023864 109 GLLYAEN-DTLFESTG--LY-------------GRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGE--KLFQVTWLQK 170 (276)
Q Consensus 109 GL~~~~d-g~LyeStG--~y-------------g~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~--~LyqlTwk~~ 170 (276)
+|.++++ |.+|.+-. .| ...+|.+||+.|+++. +-++.-.|+-|+++..| .+.+.--...
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~--vl~~~L~fpNGVals~d~~~vlv~Et~~~ 79 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETT--VLLDGLYFPNGVALSPDESFVLVAETGRY 79 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEE--EEEEEESSEEEEEE-TTSSEEEEEEGGGT
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEE--EehhCCCccCeEEEcCCCCEEEEEeccCc
Confidence 5677777 77775433 22 3367999999999862 33555679999999754 5555544445
Q ss_pred EEEEE
Q 023864 171 TGFIY 175 (276)
Q Consensus 171 ~v~V~ 175 (276)
++..|
T Consensus 80 Ri~ry 84 (89)
T PF03088_consen 80 RILRY 84 (89)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 55544
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=81.91 E-value=14 Score=36.74 Aligned_cols=138 Identities=12% Similarity=0.191 Sum_probs=83.8
Q ss_pred CCCCCCceeeeEE---EEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC
Q 023864 83 GVDQSPSIYTIQV---VNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG 159 (276)
Q Consensus 83 ~~~~~~~~~t~~V---v~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g 159 (276)
..+..+.++..+. ..++.. ...|++||.++....+ ++| .+.+|..|-.+- ...+++.....+. ||.-..
T Consensus 86 s~DG~VkiWnlsqR~~~~~f~A-H~G~V~Gi~v~~~~~~--tvg--dDKtvK~wk~~~-~p~~tilg~s~~~--gIdh~~ 157 (433)
T KOG0268|consen 86 SCDGEVKIWNLSQRECIRTFKA-HEGLVRGICVTQTSFF--TVG--DDKTVKQWKIDG-PPLHTILGKSVYL--GIDHHR 157 (433)
T ss_pred ccCceEEEEehhhhhhhheeec-ccCceeeEEecccceE--Eec--CCcceeeeeccC-Ccceeeecccccc--cccccc
Confidence 3566666665554 444432 2569999999862233 466 566788876643 3444433333322 333221
Q ss_pred -CEEEEEEeeCCEEEEEeCCCCcEEEEEecCCC--CeeEEeeCCCEEEEECC-CceEEEEcCCCCcEEEEEEeee
Q 023864 160 -EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMK--DGWGLATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRY 230 (276)
Q Consensus 160 -~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~--EGWGLT~Dg~~L~vSDG-S~~L~viDp~t~~vi~~I~V~~ 230 (276)
+.+| +-.+..+.+||..-..++.++..+.. --.-+.|-...++.|-| ...|.++|..+.+.++++..+.
T Consensus 158 ~~~~F--aTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~m 230 (433)
T KOG0268|consen 158 KNSVF--ATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTM 230 (433)
T ss_pred ccccc--cccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeec
Confidence 2222 33467788999888888887764310 11113344556777775 5689999999999999998876
|
|
| >PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=81.01 E-value=4.2 Score=24.93 Aligned_cols=26 Identities=12% Similarity=0.385 Sum_probs=20.7
Q ss_pred CceEEEEecCCEEEEEcCCCCCCeEEEE
Q 023864 106 FTQGLLYAENDTLFESTGLYGRSSVRRV 133 (276)
Q Consensus 106 FTQGL~~~~dg~LyeStG~yg~S~I~~i 133 (276)
+..|++++++|.+|++- .+..+|.++
T Consensus 3 ~P~gvav~~~g~i~VaD--~~n~rV~vf 28 (28)
T PF01436_consen 3 YPHGVAVDSDGNIYVAD--SGNHRVQVF 28 (28)
T ss_dssp SEEEEEEETTSEEEEEE--CCCTEEEEE
T ss_pred CCcEEEEeCCCCEEEEE--CCCCEEEEC
Confidence 34699999999999874 588888764
|
For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.01 E-value=23 Score=37.87 Aligned_cols=35 Identities=11% Similarity=0.167 Sum_probs=28.5
Q ss_pred ceEEEEecCC-EEEEEcCCCCCCeEEEEeCCCCcEEEEee
Q 023864 107 TQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQ 145 (276)
Q Consensus 107 TQGL~~~~dg-~LyeStG~yg~S~I~~iDl~tgkv~~~~~ 145 (276)
..-++|.||| +|...+| +++..||+..|.+.+..+
T Consensus 15 i~d~afkPDGsqL~lAAg----~rlliyD~ndG~llqtLK 50 (1081)
T KOG1538|consen 15 INDIAFKPDGTQLILAAG----SRLLVYDTSDGTLLQPLK 50 (1081)
T ss_pred hheeEECCCCceEEEecC----CEEEEEeCCCcccccccc
Confidence 3578999998 4888888 899999999998766543
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.81 E-value=2.9 Score=43.45 Aligned_cols=71 Identities=13% Similarity=0.157 Sum_probs=51.0
Q ss_pred ecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEE----EEeCCEEEEEEeeCCEEEEE
Q 023864 100 PHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGL----TLLGEKLFQVTWLQKTGFIY 175 (276)
Q Consensus 100 Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGi----t~~g~~LyqlTwk~~~v~V~ 175 (276)
+.-+.++.+-|.++-+|.||++|- .-+.+||..+||..+....+ |-|-| .-.+++||+-||+. ++++
T Consensus 160 ~ll~d~~V~aLv~D~~g~lWvgT~----dGL~~fd~~~gkalql~s~~---~dk~I~al~~d~qg~LWVGTdqG--v~~~ 230 (671)
T COG3292 160 PLLKDTPVVALVFDANGRLWVGTP----DGLSYFDAGRGKALQLASPP---LDKAINALIADVQGRLWVGTDQG--VYLQ 230 (671)
T ss_pred ccccCccceeeeeeccCcEEEecC----CcceEEccccceEEEcCCCc---chhhHHHHHHHhcCcEEEEeccc--eEEE
Confidence 444688999999998899998765 67999999999987754333 21222 12368999999875 5555
Q ss_pred eCCC
Q 023864 176 DQNN 179 (276)
Q Consensus 176 D~~t 179 (276)
++..
T Consensus 231 e~~G 234 (671)
T COG3292 231 EAEG 234 (671)
T ss_pred chhh
Confidence 5444
|
|
| >PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=80.71 E-value=4.2 Score=24.91 Aligned_cols=25 Identities=4% Similarity=0.175 Sum_probs=21.0
Q ss_pred eEEEEEEe-CCEEEEEEeeCCEEEEE
Q 023864 151 FGEGLTLL-GEKLFQVTWLQKTGFIY 175 (276)
Q Consensus 151 FgEGit~~-g~~LyqlTwk~~~v~V~ 175 (276)
++.|+++. ++.||++...++++.+|
T Consensus 3 ~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 3 YPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp SEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 46788885 68999999999998875
|
For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=80.49 E-value=58 Score=35.34 Aligned_cols=146 Identities=14% Similarity=0.132 Sum_probs=75.9
Q ss_pred EEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEE-------eeCCEEEEEeCCCC--
Q 023864 110 LLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVT-------WLQKTGFIYDQNNL-- 180 (276)
Q Consensus 110 L~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlT-------wk~~~v~V~D~~tl-- 180 (276)
|....|..|+..... ..+.|++.|+++||++..-++....=-..++.. .+.-|+| ...+.+|.+|+.--
T Consensus 487 mL~~~d~~mil~~~~-~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~-~K~aqlt~e~tflGls~n~lfriDpR~~~~ 564 (794)
T PF08553_consen 487 MLHDQDRNMILLDPN-NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPD-SKFAQLTNEQTFLGLSDNSLFRIDPRLSGN 564 (794)
T ss_pred hhhccccceEeecCC-CCCceEEEecCCCcEEEEeecCCCcceeEeccc-ccccccCCCceEEEECCCceEEeccCCCCC
Confidence 333334455544443 678999999999999998877653201112211 1222222 23678888998632
Q ss_pred cEEE----EEecCCC-CeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECC-EEEEEeCC
Q 023864 181 NKLE----EFTHQMK-DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKG-EVWANVWQ 254 (276)
Q Consensus 181 k~i~----~~~~~~~-EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG-~lyANvw~ 254 (276)
+++. .+..... ...+.|.+|...+.|+ ...|..+|.- ++- ++-...-=|.||.++- . -.|| +|.|.|=
T Consensus 565 k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~-~G~IRLyd~~-g~~-AKT~lp~lG~pI~~iD-v-t~DGkwilaTc~- 638 (794)
T PF08553_consen 565 KLVDSQSKQYSSKNNFSCFATTEDGYIAVGSN-KGDIRLYDRL-GKR-AKTALPGLGDPIIGID-V-TADGKWILATCK- 638 (794)
T ss_pred ceeeccccccccCCCceEEEecCCceEEEEeC-CCcEEeeccc-chh-hhhcCCCCCCCeeEEE-e-cCCCcEEEEeec-
Confidence 2221 2221111 2223344454444444 4555566732 221 2222212256776652 1 1256 5999993
Q ss_pred CCCeEEEEeCC
Q 023864 255 VWPCIPYAYLQ 265 (276)
Q Consensus 255 s~d~I~vIDp~ 265 (276)
.+++.||+.
T Consensus 639 --tyLlLi~t~ 647 (794)
T PF08553_consen 639 --TYLLLIDTL 647 (794)
T ss_pred --ceEEEEEEe
Confidence 679999974
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.14 E-value=62 Score=31.64 Aligned_cols=122 Identities=5% Similarity=0.064 Sum_probs=82.5
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCC---CcEEEEeecCCCceEEEEEEeCCEEEEEEee
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALET---GKVEAINQMEGSYFGEGLTLLGEKLFQVTWL 168 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~t---gkv~~~~~l~~~~FgEGit~~g~~LyqlTwk 168 (276)
+.+.+..++.| -++.|..+++ +-+|++.= .+-+..+|..+ -++..+..++..- .+-+++.|++-|+.-|.
T Consensus 118 sP~~~~~lnt~--gyaygv~vsG-n~aYVadl---ddgfLivdvsdpssP~lagrya~~~~d-~~~v~ISGn~AYvA~~d 190 (370)
T COG5276 118 SPTLIGFLNTD--GYAYGVYVSG-NYAYVADL---DDGFLIVDVSDPSSPQLAGRYALPGGD-THDVAISGNYAYVAWRD 190 (370)
T ss_pred CcceeccccCC--ceEEEEEecC-CEEEEeec---cCcEEEEECCCCCCceeeeeeccCCCC-ceeEEEecCeEEEEEeC
Confidence 34466677664 5666888875 57888642 34455666554 3455555555421 25788899999998776
Q ss_pred CCEEEE--EeCCCCcEEEEEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCc
Q 023864 169 QKTGFI--YDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLK 221 (276)
Q Consensus 169 ~~~v~V--~D~~tlk~i~~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~ 221 (276)
++-..+ =|+.+-+.++....+ +.-++...-+++.|+.++..-|..+|..+.+
T Consensus 191 ~GL~ivDVSnp~sPvli~~~n~g-~g~~sv~vsdnr~y~vvy~egvlivd~s~~s 244 (370)
T COG5276 191 GGLTIVDVSNPHSPVLIGSYNTG-PGTYSVSVSDNRAYLVVYDEGVLIVDVSGPS 244 (370)
T ss_pred CCeEEEEccCCCCCeEEEEEecC-CceEEEEecCCeeEEEEcccceEEEecCCCC
Confidence 665443 345667788888876 4556667778888888988889999877765
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=80.08 E-value=17 Score=38.36 Aligned_cols=168 Identities=15% Similarity=0.132 Sum_probs=91.3
Q ss_pred EEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEE-eecCCC--ceEEEEEEeCCEEEEEEeeCCE
Q 023864 95 VVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAI-NQMEGS--YFGEGLTLLGEKLFQVTWLQKT 171 (276)
Q Consensus 95 Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~-~~l~~~--~FgEGit~~g~~LyqlTwk~~~ 171 (276)
...=.-|+..-| -|.+.|...+++++- |++.++.||.+++++... ..++.. .=-|.+...|..+|+.--+++.
T Consensus 93 lk~~~aH~nAif--Dl~wapge~~lVsas--GDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~ 168 (720)
T KOG0321|consen 93 LKKPLAHKNAIF--DLKWAPGESLLVSAS--GDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGE 168 (720)
T ss_pred hcccccccceeE--eeccCCCceeEEEcc--CCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCc
Confidence 333445766666 778887444777766 999999999999887554 122210 1112333445556666666666
Q ss_pred EEEEeCC-CC----------------------cEE-EEEecC-----CCCee--E-EeeCCCEEEEEC-CCceEEEEcCC
Q 023864 172 GFIYDQN-NL----------------------NKL-EEFTHQ-----MKDGW--G-LATDGKVLFGSD-GSSMLYQIDPQ 218 (276)
Q Consensus 172 v~V~D~~-tl----------------------k~i-~~~~~~-----~~EGW--G-LT~Dg~~L~vSD-GS~~L~viDp~ 218 (276)
+.++|.. +. +++ ++++-. .-++. + |--|...|.-+- ++..|-|+|..
T Consensus 169 illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLR 248 (720)
T KOG0321|consen 169 ILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLR 248 (720)
T ss_pred EEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeec
Confidence 6666642 11 111 111100 01221 1 223545554433 37889999977
Q ss_pred CCcEEEEE-Eeee------CCEeeeeeeeeEEE--CCEEEEEeCCCCCeEEEEeCCCCcE
Q 023864 219 TLKVIRKD-IVRY------KGREVRNLNELEFI--KGEVWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 219 t~~vi~~I-~V~~------~g~pv~~lNELE~i--dG~lyANvw~s~d~I~vIDp~T~~v 269 (276)
+.+-..+. ..+. ..+.+...| |-.+ +-+||||| .+ |.|..-|..+..+
T Consensus 249 k~~~~~r~ep~~~~~~~t~skrs~G~~n-L~lDssGt~L~AsC-tD-~sIy~ynm~s~s~ 305 (720)
T KOG0321|consen 249 KNYTAYRQEPRGSDKYPTHSKRSVGQVN-LILDSSGTYLFASC-TD-NSIYFYNMRSLSI 305 (720)
T ss_pred ccccccccCCCcccCccCcccceeeeEE-EEecCCCCeEEEEe-cC-CcEEEEeccccCc
Confidence 65432221 1111 223444444 1121 34899999 46 9999999988654
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=80.05 E-value=15 Score=40.29 Aligned_cols=163 Identities=10% Similarity=0.106 Sum_probs=96.6
Q ss_pred ceEEEEecCCEEEEEcCCCCCCeEEEEeCCC----------CcEEEEe------ecCCCceEE--EEEEe-CCEEEEEEe
Q 023864 107 TQGLLYAENDTLFESTGLYGRSSVRRVALET----------GKVEAIN------QMEGSYFGE--GLTLL-GEKLFQVTW 167 (276)
Q Consensus 107 TQGL~~~~dg~LyeStG~yg~S~I~~iDl~t----------gkv~~~~------~l~~~~FgE--Git~~-g~~LyqlTw 167 (276)
.--+.|++||..+.|++ ++.-|.+|+.+. |...... .+-.+. ++ -+... ++.+.+.--
T Consensus 72 v~CVR~S~dG~~lAsGS--DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~-~DV~Dv~Wsp~~~~lvS~s 148 (942)
T KOG0973|consen 72 VNCVRFSPDGSYLASGS--DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHD-SDVLDVNWSPDDSLLVSVS 148 (942)
T ss_pred eeEEEECCCCCeEeecc--CcceEEEeeecccCCcccccccccccccceeeEEEEEecCC-CccceeccCCCccEEEEec
Confidence 35677999998777666 555566676652 1100000 000000 00 11111 367777777
Q ss_pred eCCEEEEEeCCCCcEEEEEec-C-CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeee-eeeeeEEE
Q 023864 168 LQKTGFIYDQNNLNKLEEFTH-Q-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVR-NLNELEFI 244 (276)
Q Consensus 168 k~~~v~V~D~~tlk~i~~~~~-~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~-~lNELE~i 244 (276)
.++++.+||..||+.++.+.- . ..-|....|-|+++-.--.+.+|-+++..++.+.++|.=-.+..+.. +.--|-|.
T Consensus 149 ~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWS 228 (942)
T KOG0973|consen 149 LDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWS 228 (942)
T ss_pred ccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccC
Confidence 899999999999999998862 2 23455566668887654457789999989999988886532211110 11112243
Q ss_pred -CCEEEE----EeCCCCCeEEEEeCCCCcEEEEE
Q 023864 245 -KGEVWA----NVWQVWPCIPYAYLQAFGSSLVY 273 (276)
Q Consensus 245 -dG~lyA----Nvw~s~d~I~vIDp~T~~v~l~~ 273 (276)
||...| -+-.. .+|.+|+-+|.++....
T Consensus 229 PDG~~las~nA~n~~~-~~~~IieR~tWk~~~~L 261 (942)
T KOG0973|consen 229 PDGHHLASPNAVNGGK-STIAIIERGTWKVDKDL 261 (942)
T ss_pred CCcCeecchhhccCCc-ceeEEEecCCceeeeee
Confidence 665332 22345 68999998887765443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 276 | ||||
| 2iwa_A | 266 | Unbound Glutaminyl Cyclotransferase From Carica Pap | 1e-69 | ||
| 3mbr_X | 243 | Crystal Structure Of The Glutaminyl Cyclase From Xa | 3e-31 | ||
| 3nol_A | 262 | Crystal Structure Of Zymomonas Mobilis Glutaminyl C | 5e-28 | ||
| 3nok_A | 268 | Crystal Structure Of Myxococcus Xanthus Glutaminyl | 6e-19 |
| >pdb|2IWA|A Chain A, Unbound Glutaminyl Cyclotransferase From Carica Papaya. Length = 266 | Back alignment and structure |
|
| >pdb|3MBR|X Chain X, Crystal Structure Of The Glutaminyl Cyclase From Xanthomonas Campestris Length = 243 | Back alignment and structure |
|
| >pdb|3NOL|A Chain A, Crystal Structure Of Zymomonas Mobilis Glutaminyl Cyclase (Trigonal Form) Length = 262 | Back alignment and structure |
|
| >pdb|3NOK|A Chain A, Crystal Structure Of Myxococcus Xanthus Glutaminyl Cyclase Length = 268 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* Length = 266 | Back alignment and structure |
|---|
Score = 176 bits (447), Expect = 2e-54
Identities = 118/168 (70%), Positives = 144/168 (85%)
Query: 87 SPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM 146
S +Y ++V+NEFPHDP AFTQGL+YAENDTLFESTGLYGRSSVR+VAL+TGKVE I++M
Sbjct: 3 SSRVYIVEVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKM 62
Query: 147 EGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGS 206
+ SYFGEGLTLL EKL+QV WL+ GFIYD+ L+ ++ FTHQMKDGWGLATDGK+L+GS
Sbjct: 63 DDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGS 122
Query: 207 DGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQ 254
DG+S+LY+IDP T K+I+K V+Y G V LNELE+I GEVWAN+WQ
Sbjct: 123 DGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQ 170
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A Length = 262 | Back alignment and structure |
|---|
Score = 166 bits (421), Expect = 9e-51
Identities = 69/170 (40%), Positives = 106/170 (62%), Gaps = 2/170 (1%)
Query: 85 DQSPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAIN 144
S IY Q+V+ +PHD +AFT+G Y N +ESTGL GRSS+R+V +E+GK
Sbjct: 23 TPSIPIYDYQIVHSYPHDTKAFTEGFFY-RNGYFYESTGLNGRSSIRKVDIESGKTLQQI 81
Query: 145 QMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLF 204
++ YFGEG++ +K+ +TW GF+++ NL ++ F + +GWGL + + L
Sbjct: 82 ELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNY-DGEGWGLTHNDQYLI 140
Query: 205 GSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQ 254
SDG+ +L +DP++L +R V G E+ LNELE++ GE++ANVWQ
Sbjct: 141 MSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQ 190
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Length = 243 | Back alignment and structure |
|---|
Score = 165 bits (419), Expect = 1e-50
Identities = 68/169 (40%), Positives = 98/169 (57%), Gaps = 2/169 (1%)
Query: 86 QSPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQ 145
+VV +PHD AFT+GL Y L+ESTG GRSSVR+V LETG++ +
Sbjct: 2 DPVPTQGYRVVKRYPHDTTAFTEGLFYL-RGHLYESTGETGRSSVRKVDLETGRILQRAE 60
Query: 146 MEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFG 205
+ YFG G+ ++L Q+TW GF+YD L F + +GW L +D L+
Sbjct: 61 VPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPG-EGWALTSDDSHLYM 119
Query: 206 SDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQ 254
SDG++++ ++DP TL+ + V GR + NLNELE++ GE+ ANVW
Sbjct: 120 SDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWL 168
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} Length = 268 | Back alignment and structure |
|---|
Score = 158 bits (401), Expect = 1e-47
Identities = 55/173 (31%), Positives = 88/173 (50%), Gaps = 5/173 (2%)
Query: 82 PGVDQSPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVE 141
G Q P ++ E+PH AFTQGL++ FESTG G ++R+++LE+ +
Sbjct: 32 GGSVQEPVRRVAHIIREYPHATNAFTQGLVFH-QGHFFESTGHQG--TLRQLSLESAQPV 88
Query: 142 AINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGK 201
+ G+ F EGL GE+L+Q+TW + F + + + +GWGL
Sbjct: 89 W-MERLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSG-EGWGLCYWNG 146
Query: 202 VLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQ 254
L SDG +ML +P ++ V+ +G+ V +NELE G ++AN+W
Sbjct: 147 KLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWH 199
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Length = 328 | Back alignment and structure |
|---|
Score = 40.4 bits (94), Expect = 4e-04
Identities = 20/151 (13%), Positives = 45/151 (29%), Gaps = 15/151 (9%)
Query: 121 STGLY---------GRSSVRRVALETGKVEA-----INQMEGSYFGEGLTLLGEKLFQVT 166
++GL+ +++ T +VE N + + + + + V
Sbjct: 1 ASGLFITNEGNFQYSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVV 60
Query: 167 WLQKTGFIYDQNNLNKLEEFTHQMK-DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRK 225
F D N ++ T +D K ++ I+P+T ++
Sbjct: 61 NNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGY 120
Query: 226 DIVRYKGREVRNLNELEFIKGEVWANVWQVW 256
E + ++ V+ N W
Sbjct: 121 IECPDMDMESGSTEQMVQYGKYVYVNCWSYQ 151
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 276 | |||
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 100.0 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 100.0 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 100.0 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 100.0 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.79 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.77 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.75 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.75 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.69 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.68 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 99.64 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 99.63 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.63 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.62 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 99.62 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.59 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.57 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.56 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.51 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.5 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.48 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.48 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.48 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.47 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.47 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.46 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.45 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.44 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.44 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.43 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.41 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.4 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.39 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.39 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.37 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.37 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.36 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.35 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 99.31 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.3 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.29 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.28 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.27 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.27 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.26 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 99.25 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 99.25 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 99.24 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 99.24 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.24 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.22 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.21 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.21 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.21 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.2 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.19 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.18 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.18 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.16 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.16 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.16 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.15 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.15 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 99.15 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.15 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 99.12 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.12 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.12 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.1 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.09 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.09 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.08 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 99.08 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 99.06 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.05 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.04 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 99.03 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 99.03 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.0 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.97 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.96 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.96 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.95 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.94 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.94 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.93 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.92 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.92 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.91 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.91 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.9 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.9 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.89 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 98.89 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.88 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.87 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 98.8 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.78 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 98.75 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.75 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.75 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.73 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.73 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.72 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 98.72 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 98.71 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.7 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 98.68 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 98.67 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 98.66 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.66 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 98.65 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 98.65 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 98.62 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 98.61 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.6 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.6 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 98.56 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 98.55 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.55 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 98.55 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 98.54 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 98.53 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.5 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.49 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 98.49 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 98.48 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 98.47 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.45 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 98.45 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 98.42 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 98.41 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 98.4 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 98.4 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 98.4 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.4 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 98.38 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 98.36 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.34 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 98.34 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 98.34 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 98.33 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 98.33 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 98.33 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 98.33 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 98.33 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 98.32 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 98.31 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 98.31 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 98.31 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 98.3 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 98.29 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.29 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 98.29 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 98.27 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 98.27 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 98.27 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 98.27 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 98.27 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 98.27 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 98.26 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 98.26 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 98.26 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 98.24 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 98.24 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 98.23 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 98.23 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 98.22 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 98.22 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 98.21 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 98.2 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.2 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 98.2 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.19 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 98.18 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 98.17 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 98.17 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 98.16 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 98.15 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 98.15 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 98.14 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 98.13 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 98.12 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 98.11 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 98.1 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 98.1 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 98.1 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 98.08 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 98.08 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 98.06 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 98.05 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 98.04 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 98.04 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 98.03 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.02 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 98.02 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 98.01 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 97.99 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 97.99 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 97.99 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 97.99 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 97.99 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 97.97 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 97.97 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.97 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 97.96 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 97.96 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 97.95 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 97.95 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 97.95 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 97.95 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 97.93 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 97.93 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 97.92 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 97.9 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 97.9 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 97.89 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 97.89 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 97.89 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 97.88 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 97.88 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.87 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 97.87 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.87 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 97.87 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 97.86 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 97.85 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.85 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 97.84 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 97.84 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.84 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 97.8 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.79 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.79 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 97.78 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.77 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 97.75 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 97.75 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 97.75 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 97.74 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 97.73 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 97.73 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 97.73 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 97.72 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 97.72 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 97.69 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 97.69 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 97.69 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 97.68 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.68 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 97.68 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 97.67 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 97.67 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.67 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 97.66 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.65 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 97.64 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 97.64 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 97.64 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 97.61 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.6 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 97.6 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 97.6 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.6 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 97.59 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.57 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 97.55 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.54 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 97.53 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 97.48 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 97.48 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 97.47 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 97.47 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 97.46 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 97.45 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 97.44 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 97.44 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 97.43 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 97.43 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 97.39 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 97.38 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 97.37 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 97.36 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 97.33 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 97.29 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 97.29 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 97.28 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 97.28 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 97.28 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 97.23 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 97.23 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 97.21 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 97.2 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 97.18 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 97.16 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 97.14 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 97.14 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 97.11 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 97.11 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 97.06 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 97.05 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 97.01 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 97.01 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 97.0 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 97.0 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 96.99 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 96.99 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 96.96 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 96.95 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 96.88 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 96.87 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 96.84 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 96.82 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 96.75 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 96.65 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 96.61 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 96.59 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 96.54 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.4 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 96.38 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 96.25 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 96.18 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 95.95 | |
| 3s9j_A | 369 | Member of DUF4221 family; 6-bladed beta-propeller, | 95.92 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 95.87 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 95.81 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 95.56 | |
| 3s9j_A | 369 | Member of DUF4221 family; 6-bladed beta-propeller, | 95.31 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 95.21 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 94.98 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 94.95 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 94.95 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 94.6 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 94.59 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 94.31 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 91.82 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 91.67 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 88.92 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 88.82 | |
| 3hx6_A | 570 | Type 4 fimbrial biogenesis protein PILY1; beta pro | 81.62 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 80.55 |
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-57 Score=411.11 Aligned_cols=186 Identities=37% Similarity=0.661 Sum_probs=178.9
Q ss_pred CCCceeeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEE
Q 023864 86 QSPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQV 165 (276)
Q Consensus 86 ~~~~~~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~Lyql 165 (276)
.+++.++++||++||||+.+|||||+|++ ++||||||+||+|+|+++|++||+++++++++.++||||+++++++|||+
T Consensus 2 ~~~~~~~~~v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~l 80 (243)
T 3mbr_X 2 DPVPTQGYRVVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQL 80 (243)
T ss_dssp -CCCBCCEEEEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEE
T ss_pred CCCcccceEEEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEE
Confidence 36788999999999999999999999995 89999999999999999999999999999999999999999999999999
Q ss_pred EeeCCEEEEEeCCCCcEEEEEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEEC
Q 023864 166 TWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIK 245 (276)
Q Consensus 166 Twk~~~v~V~D~~tlk~i~~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~id 245 (276)
||+++++++||++|++++++|+++ +||||||+||++||||||+++|+++||+|++++++|.|+++|.|+.++|||||++
T Consensus 81 tw~~~~v~v~D~~tl~~~~ti~~~-~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~ 159 (243)
T 3mbr_X 81 TWRNHEGFVYDLATLTPRARFRYP-GEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVN 159 (243)
T ss_dssp ESSSSEEEEEETTTTEEEEEEECS-SCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEET
T ss_pred EeeCCEEEEEECCcCcEEEEEeCC-CCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeC
Confidence 999999999999999999999998 7999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCCCeEEEEeCCCCcEEEEEEe
Q 023864 246 GEVWANVWQVWPCIPYAYLQAFGSSLVYVT 275 (276)
Q Consensus 246 G~lyANvw~s~d~I~vIDp~T~~v~l~~~~ 275 (276)
|+||||+|++ |+|++|||+||+|+ +.|.
T Consensus 160 G~lyanvw~s-~~I~vIDp~tG~V~-~~id 187 (243)
T 3mbr_X 160 GELLANVWLT-SRIARIDPASGKVV-AWID 187 (243)
T ss_dssp TEEEEEETTT-TEEEEECTTTCBEE-EEEE
T ss_pred CEEEEEECCC-CeEEEEECCCCCEE-EEEE
Confidence 9999999999 99999999997655 6653
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-55 Score=405.09 Aligned_cols=187 Identities=37% Similarity=0.691 Sum_probs=179.1
Q ss_pred CCCCceeeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEE
Q 023864 85 DQSPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQ 164 (276)
Q Consensus 85 ~~~~~~~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~Lyq 164 (276)
..+++.++++|+++||||+.+|||||+|+ |++||||||+||+|+|+++|++||++++++++++++||||+++++++|||
T Consensus 23 ~~~~~~~~~~vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ 101 (262)
T 3nol_A 23 TPSIPIYDYQIVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVG 101 (262)
T ss_dssp --CCCEEEEEEEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEE
T ss_pred CCCCcccceEEEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEE
Confidence 45678899999999999999999999999 68999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCEEEEEeCCCCcEEEEEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE
Q 023864 165 VTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI 244 (276)
Q Consensus 165 lTwk~~~v~V~D~~tlk~i~~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i 244 (276)
+||+++++++||++|++++++|+++ +||||||+||++||||||+++|+++||+|++++++|.|+.+|+|+.++|||||+
T Consensus 102 ltw~~~~v~v~D~~t~~~~~ti~~~-~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~ 180 (262)
T 3nol_A 102 LTWKNGLGFVWNIRNLRQVRSFNYD-GEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV 180 (262)
T ss_dssp EESSSSEEEEEETTTCCEEEEEECS-SCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE
T ss_pred EEeeCCEEEEEECccCcEEEEEECC-CCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE
Confidence 9999999999999999999999998 799999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCCCeEEEEeCCCCcEEEEEEe
Q 023864 245 KGEVWANVWQVWPCIPYAYLQAFGSSLVYVT 275 (276)
Q Consensus 245 dG~lyANvw~s~d~I~vIDp~T~~v~l~~~~ 275 (276)
||+||||+|++ |+|++|||+||+|+ +.|.
T Consensus 181 ~G~lyan~w~~-~~I~vIDp~tG~V~-~~Id 209 (262)
T 3nol_A 181 DGEIFANVWQT-NKIVRIDPETGKVT-GIID 209 (262)
T ss_dssp TTEEEEEETTS-SEEEEECTTTCBEE-EEEE
T ss_pred CCEEEEEEccC-CeEEEEECCCCcEE-EEEE
Confidence 99999999999 99999999997654 6653
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-52 Score=383.42 Aligned_cols=182 Identities=29% Similarity=0.494 Sum_probs=173.0
Q ss_pred CCceeeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEE
Q 023864 87 SPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVT 166 (276)
Q Consensus 87 ~~~~~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlT 166 (276)
+|-.-..+|+++||||+.+|||||+|+ +++||||+|+||+ |+++|++||++++++ +++++||||+++++++|||+|
T Consensus 37 ~~~~~~~~Vv~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~--v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~lt 112 (268)
T 3nok_A 37 EPVRRVAHIIREYPHATNAFTQGLVFH-QGHFFESTGHQGT--LRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLT 112 (268)
T ss_dssp CCEEEEEEEEEEEECCTTCCEEEEEEE-TTEEEEEETTTTE--EEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEE
T ss_pred CccccceEEEEEEcCCCccccceEEEE-CCEEEEEcCCCCE--EEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEE
Confidence 344567799999999999999999998 4899999999888 999999999999999 999999999999999999999
Q ss_pred eeCCEEEEEeCCCCcEEEEEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECC
Q 023864 167 WLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKG 246 (276)
Q Consensus 167 wk~~~v~V~D~~tlk~i~~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG 246 (276)
|+++++++||++|++++++|+++ +||||||+||++||+|||+++|+++||+|++++++|.|+.+|+++.++|||||+||
T Consensus 113 w~~~~v~V~D~~Tl~~~~ti~~~-~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG 191 (268)
T 3nok_A 113 WTEGLLFTWSGMPPQRERTTRYS-GEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANG 191 (268)
T ss_dssp SSSCEEEEEETTTTEEEEEEECS-SCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETT
T ss_pred ccCCEEEEEECCcCcEEEEEeCC-CceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCC
Confidence 99999999999999999999998 89999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCeEEEEeCCCCcEEEEEEe
Q 023864 247 EVWANVWQVWPCIPYAYLQAFGSSLVYVT 275 (276)
Q Consensus 247 ~lyANvw~s~d~I~vIDp~T~~v~l~~~~ 275 (276)
+||||+|++ |+|++|||+||+|+ +.|.
T Consensus 192 ~lyanvw~s-~~I~vIDp~TG~V~-~~Id 218 (268)
T 3nok_A 192 VIYANIWHS-SDVLEIDPATGTVV-GVID 218 (268)
T ss_dssp EEEEEETTC-SEEEEECTTTCBEE-EEEE
T ss_pred EEEEEECCC-CeEEEEeCCCCcEE-EEEE
Confidence 999999999 99999999996654 6654
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-49 Score=362.76 Aligned_cols=188 Identities=64% Similarity=1.128 Sum_probs=180.6
Q ss_pred CCCceeeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEE
Q 023864 86 QSPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQV 165 (276)
Q Consensus 86 ~~~~~~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~Lyql 165 (276)
++++.++++|+++|||++.+|||||+|++||+||||+|+|++++|+++|++||+++++++++.++||||+++++++||++
T Consensus 2 ~~~~~~~~~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~ 81 (266)
T 2iwa_A 2 PSSRVYIVEVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQV 81 (266)
T ss_dssp CCCCEEEEEEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEE
T ss_pred CCCCccCceEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEE
Confidence 46788999999999999999999999999899999999999999999999999999999999999999999999999999
Q ss_pred EeeCCEEEEEeCCCCcEEEEEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEEC
Q 023864 166 TWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIK 245 (276)
Q Consensus 166 Twk~~~v~V~D~~tlk~i~~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~id 245 (276)
||+++++++||++|++++++|+++++|||||++||++||+|||+++|++|||+|++++++|.|+.+|+|+.++|||||+|
T Consensus 82 t~~~~~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~d 161 (266)
T 2iwa_A 82 VWLKNIGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYIN 161 (266)
T ss_dssp ETTCSEEEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEET
T ss_pred EecCCEEEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEEC
Confidence 99999999999999999999998667999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCCCeEEEEeCCCCcEEEEEEe
Q 023864 246 GEVWANVWQVWPCIPYAYLQAFGSSLVYVT 275 (276)
Q Consensus 246 G~lyANvw~s~d~I~vIDp~T~~v~l~~~~ 275 (276)
|+||||+|.+ |.|++|||+|+++ ++.|.
T Consensus 162 g~lyvn~~~~-~~V~vID~~tg~V-~~~I~ 189 (266)
T 2iwa_A 162 GEVWANIWQT-DCIARISAKDGTL-LGWIL 189 (266)
T ss_dssp TEEEEEETTS-SEEEEEETTTCCE-EEEEE
T ss_pred CEEEEecCCC-CeEEEEECCCCcE-EEEEE
Confidence 9999999999 9999999999776 47764
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.7e-18 Score=154.00 Aligned_cols=154 Identities=12% Similarity=0.050 Sum_probs=124.0
Q ss_pred EEEEcCCCC--CCeEEEEeCCCCcEEEEeec-----CCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEecC-
Q 023864 118 LFESTGLYG--RSSVRRVALETGKVEAINQM-----EGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ- 189 (276)
Q Consensus 118 LyeStG~yg--~S~I~~iDl~tgkv~~~~~l-----~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~- 189 (276)
+....|.+| .+.|.+||++|+++.+.+.. +-..+++++++++++||++++.++.+.++|++|++++++++..
T Consensus 5 ~v~neg~~g~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~ 84 (328)
T 3dsm_A 5 FITNEGNFQYSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITGFT 84 (328)
T ss_dssp EEEECCCTTSCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEECCS
T ss_pred EEEecCCCCCCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCCCC
Confidence 334456555 68999999999999776521 2345789999999999999999999999999999999999753
Q ss_pred CCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCC-CCCeEEEEeCCCC
Q 023864 190 MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQ-VWPCIPYAYLQAF 267 (276)
Q Consensus 190 ~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~-s~d~I~vIDp~T~ 267 (276)
.+++..+++|| .||++| .++.|+++|++|+++++++.++........++.|.+.+|+||++.|. + +.|.+||++|+
T Consensus 85 ~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~-~~v~viD~~t~ 162 (328)
T 3dsm_A 85 SPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQ-NRILKIDTETD 162 (328)
T ss_dssp SEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTC-CEEEEEETTTT
T ss_pred CCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCC-CEEEEEECCCC
Confidence 33444455676 899999 79999999999999999999975333334667788889999999994 8 99999999996
Q ss_pred cEEEEEE
Q 023864 268 GSSLVYV 274 (276)
Q Consensus 268 ~v~l~~~ 274 (276)
+++ ..+
T Consensus 163 ~~~-~~i 168 (328)
T 3dsm_A 163 KVV-DEL 168 (328)
T ss_dssp EEE-EEE
T ss_pred eEE-EEE
Confidence 543 444
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.4e-17 Score=148.39 Aligned_cols=166 Identities=13% Similarity=0.096 Sum_probs=135.9
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCc----eEEEEEEeCCEEEEEEe
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSY----FGEGLTLLGEKLFQVTW 167 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~----FgEGit~~g~~LyqlTw 167 (276)
+.+++.+++.. ....++++++||+||+++. ..+.|.+||++++++..+++++... .++|+++.+++||+.+|
T Consensus 73 t~~~~~~i~~~--~~p~~i~~~~~g~lyv~~~--~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~ 148 (328)
T 3dsm_A 73 TFKEVGRITGF--TSPRYIHFLSDEKAYVTQI--WDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCW 148 (328)
T ss_dssp TCCEEEEEECC--SSEEEEEEEETTEEEEEEB--SCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEEC
T ss_pred ccEEEEEcCCC--CCCcEEEEeCCCeEEEEEC--CCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcC
Confidence 56788888763 4556999988899999875 4789999999999999998888722 56788889999999999
Q ss_pred -eCCEEEEEeCCCCcEEEEEecC-CCCeeEEeeCCCEEEEECCC----------ceEEEEcCCCCcEEEEEEeeeCCEee
Q 023864 168 -LQKTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDGS----------SMLYQIDPQTLKVIRKDIVRYKGREV 235 (276)
Q Consensus 168 -k~~~v~V~D~~tlk~i~~~~~~-~~EGWGLT~Dg~~L~vSDGS----------~~L~viDp~t~~vi~~I~V~~~g~pv 235 (276)
.++.+.+||+++.+++++++.+ .+.+..+++||+.++++.|. +.|+++|++|+++++++.+..+
T Consensus 149 ~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g---- 224 (328)
T 3dsm_A 149 SYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLG---- 224 (328)
T ss_dssp TTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTT----
T ss_pred CCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCC----
Confidence 5999999999999999999875 46777788888744444465 7999999999999999887532
Q ss_pred eeeeeeEEE--CCEEEEEeCCCCCeEEEEeCCCCcE
Q 023864 236 RNLNELEFI--KGEVWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 236 ~~lNELE~i--dG~lyANvw~s~d~I~vIDp~T~~v 269 (276)
..++.|.+. +++||+.+- .|.+||++++++
T Consensus 225 ~~p~~la~~~d~~~lyv~~~----~v~~~d~~t~~~ 256 (328)
T 3dsm_A 225 DWPSEVQLNGTRDTLYWINN----DIWRMPVEADRV 256 (328)
T ss_dssp CCCEEEEECTTSCEEEEESS----SEEEEETTCSSC
T ss_pred CCceeEEEecCCCEEEEEcc----EEEEEECCCCce
Confidence 156778887 457998763 699999999775
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=8.7e-17 Score=146.88 Aligned_cols=171 Identities=13% Similarity=0.044 Sum_probs=142.1
Q ss_pred eeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCC
Q 023864 91 YTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK 170 (276)
Q Consensus 91 ~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~ 170 (276)
.+-++++++|.+...|-+|+.+++ ++||.++- .++.+.+||++|++++.+++.+ .+-|-|++.++++||+.+ .++
T Consensus 52 ~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~--~~~~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~-gs~ 126 (266)
T 2iwa_A 52 QTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVW--LKNIGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSD-GTS 126 (266)
T ss_dssp TTCCEEEEEECCTTCCEEEEEEET-TEEEEEET--TCSEEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEEC-SSS
T ss_pred CCCCEEEEEecCCCcceEEEEEeC-CEEEEEEe--cCCEEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEEC-CCC
Confidence 367899999998999999999984 79999875 8999999999999999999988 444678999999999988 699
Q ss_pred EEEEEeCCCCcEEEEEecC-CC----CeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeee-------CCE-eee
Q 023864 171 TGFIYDQNNLNKLEEFTHQ-MK----DGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRY-------KGR-EVR 236 (276)
Q Consensus 171 ~v~V~D~~tlk~i~~~~~~-~~----EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~-------~g~-pv~ 236 (276)
++.++|++|++++++++.+ .+ .-++|...+..||+++ .++.|.+|||+|++++++|.+.. .+. +..
T Consensus 127 ~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~ 206 (266)
T 2iwa_A 127 ILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDID 206 (266)
T ss_dssp EEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCC
T ss_pred eEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccC
Confidence 9999999999999999864 11 2345554455899998 69999999999999999999951 111 234
Q ss_pred eeeeeEEEC--CEEEEEeCCCCCeEEEEeCCCC
Q 023864 237 NLNELEFIK--GEVWANVWQVWPCIPYAYLQAF 267 (276)
Q Consensus 237 ~lNELE~id--G~lyANvw~s~d~I~vIDp~T~ 267 (276)
.+|-+++.. +++|+.+-.. ++|.+||..+.
T Consensus 207 v~nGIa~~~~~~~lfVTgk~~-~~v~~i~l~~~ 238 (266)
T 2iwa_A 207 VLNGIAWDQENKRIFVTGKLW-PKLFEIKLHLV 238 (266)
T ss_dssp CEEEEEEETTTTEEEEEETTC-SEEEEEEEEEC
T ss_pred ceEEEEEcCCCCEEEEECCCC-CeEEEEEEecc
Confidence 789999983 4899999766 99999998763
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.6e-17 Score=158.00 Aligned_cols=173 Identities=10% Similarity=-0.033 Sum_probs=136.9
Q ss_pred eeeEEEEEEecCCCCCceEEEEecCCE-EEEEcCCC-------CCCeEEEEeCCCCcEEEEeecC--------CCceEEE
Q 023864 91 YTIQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLY-------GRSSVRRVALETGKVEAINQME--------GSYFGEG 154 (276)
Q Consensus 91 ~t~~Vv~~~Phd~~aFTQGL~~~~dg~-LyeStG~y-------g~S~I~~iDl~tgkv~~~~~l~--------~~~FgEG 154 (276)
.+.+++.++|... .. |+.+++||+ ||++.-.+ +.+.|.+||++|++++++++++ ..+.+..
T Consensus 107 ~t~~vv~~I~vG~--~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~ 183 (426)
T 3c75_H 107 STGRILGMTDGGF--LP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNA 183 (426)
T ss_dssp TTTEEEEEEEECS--SC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSE
T ss_pred CCCEEEEEEECCC--CC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEE
Confidence 4678999999854 44 999999975 99875211 3578999999999999999986 2344444
Q ss_pred EEEeCCEEEEEEee-CCEEEEEeCCCCcEEEEEecCC-------------------------------------------
Q 023864 155 LTLLGEKLFQVTWL-QKTGFIYDQNNLNKLEEFTHQM------------------------------------------- 190 (276)
Q Consensus 155 it~~g~~LyqlTwk-~~~v~V~D~~tlk~i~~~~~~~------------------------------------------- 190 (276)
++.++++||+.++. ++.+.|||.++++++++++.+.
T Consensus 184 ~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~ 263 (426)
T 3c75_H 184 LTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTED 263 (426)
T ss_dssp ECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTT
T ss_pred EcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCC
Confidence 44467899999986 8999999999999998887520
Q ss_pred ------------------------------------------------------CCe---eEEeeCCCEEEEEC------
Q 023864 191 ------------------------------------------------------KDG---WGLATDGKVLFGSD------ 207 (276)
Q Consensus 191 ------------------------------------------------------~EG---WGLT~Dg~~L~vSD------ 207 (276)
+.| .++++||++||+++
T Consensus 264 ~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~g 343 (426)
T 3c75_H 264 ELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEW 343 (426)
T ss_dssp SCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTT
T ss_pred CceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccc
Confidence 011 35677889999986
Q ss_pred ----CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-C-C-EEEEEeCCCCCeEEEEeCCCCcEEEEEE
Q 023864 208 ----GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-K-G-EVWANVWQVWPCIPYAYLQAFGSSLVYV 274 (276)
Q Consensus 208 ----GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-d-G-~lyANvw~s~d~I~vIDp~T~~v~l~~~ 274 (276)
+++.|.+||++|++++++|.|+. .++.+++. | . ++|+.+|.+ +.|+|||++|++++ +.|
T Consensus 344 thk~~s~~VsVID~~T~kvv~~I~vg~------~P~gia~spDg~~~lyv~n~~s-~~VsVID~~t~kvv-~tI 409 (426)
T 3c75_H 344 KHKAASRFVVVLNAETGERINKIELGH------EIDSINVSQDAEPLLYALSAGT-QTLHIYDAATGEEL-RSV 409 (426)
T ss_dssp CTTSCEEEEEEEETTTCCEEEEEEEEE------EECEEEECCSSSCEEEEEETTT-TEEEEEETTTCCEE-EEE
T ss_pred cccCCCCEEEEEECCCCeEEEEEECCC------CcCeEEEccCCCEEEEEEcCCC-CeEEEEECCCCCEE-EEe
Confidence 35789999999999999999985 45566666 3 3 699999999 99999999997765 664
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-15 Score=141.21 Aligned_cols=170 Identities=5% Similarity=-0.081 Sum_probs=129.6
Q ss_pred eeEEEEEEecCCCCCceEEEEecCC-EEEEEcCC-------CCCCeEEEEeCCCCcEEEEeecC-C-----CceEEEEEE
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAEND-TLFESTGL-------YGRSSVRRVALETGKVEAINQME-G-----SYFGEGLTL 157 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg-~LyeStG~-------yg~S~I~~iDl~tgkv~~~~~l~-~-----~~FgEGit~ 157 (276)
+.+++.++|.+.. . |+.++||| +||++.-. ...+.|.+||+++++++.+++++ . ..++.++++
T Consensus 56 t~~~~~~i~~g~~--p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~ 132 (373)
T 2mad_H 56 SGSILGHVNGGFL--P-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNAN 132 (373)
T ss_pred CCeEEEEecCCCC--C-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEE
Confidence 5678899987533 3 99999997 59987532 13578999999999999999887 1 123445555
Q ss_pred --eCCEEEEEEee-CCEEEEEeCCCCcEEEE-EecCC-------------------------------------------
Q 023864 158 --LGEKLFQVTWL-QKTGFIYDQNNLNKLEE-FTHQM------------------------------------------- 190 (276)
Q Consensus 158 --~g~~LyqlTwk-~~~v~V~D~~tlk~i~~-~~~~~------------------------------------------- 190 (276)
++++||+.+.. ++.+.+|| ++.+++++ ++.+.
T Consensus 133 spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~ 211 (373)
T 2mad_H 133 TPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAA 211 (373)
T ss_pred CCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCC
Confidence 67899999986 79999999 99998888 53210
Q ss_pred ------------------------------------------------------CCe---eEEeeCCCEEEEEC------
Q 023864 191 ------------------------------------------------------KDG---WGLATDGKVLFGSD------ 207 (276)
Q Consensus 191 ------------------------------------------------------~EG---WGLT~Dg~~L~vSD------ 207 (276)
+.| .++++||++||+++
T Consensus 212 ~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~ 291 (373)
T 2mad_H 212 QNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAW 291 (373)
T ss_pred cceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcc
Confidence 122 34677889999963
Q ss_pred ----CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CC--EEEEEeCCCCCeEEEEeCCCCcEEEEE
Q 023864 208 ----GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG--EVWANVWQVWPCIPYAYLQAFGSSLVY 273 (276)
Q Consensus 208 ----GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG--~lyANvw~s~d~I~vIDp~T~~v~l~~ 273 (276)
+++.|++||++|++++++|.++. .+.-|++. || .+|+.+|.+ +.|++||++|++++ +.
T Consensus 292 ~~~~~~~~V~VID~~t~~vv~~i~~g~------~p~~i~~s~Dg~~~l~v~~~~~-~~V~ViD~~t~~vv-~~ 356 (373)
T 2mad_H 292 KLHAAAKEVTSVTGLVGQTSSQISLGH------DVDAISVAQDGGPDLYALSAGT-EVLHIYDAGAGDQD-QS 356 (373)
T ss_pred cccCCCCeEEEEECCCCEEEEEEECCC------CcCeEEECCCCCeEEEEEcCCC-CeEEEEECCCCCEE-ee
Confidence 35789999999999999999875 33445555 44 489999999 99999999997765 54
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-14 Score=126.31 Aligned_cols=173 Identities=14% Similarity=0.170 Sum_probs=139.9
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCc--------eEEEEEEe--CC
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSY--------FGEGLTLL--GE 160 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~--------FgEGit~~--g~ 160 (276)
+.+++.++++... ..++.+++||+ ||.+.. +.+.|.+||+++++++..++++... ...++++. ++
T Consensus 78 ~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 153 (353)
T 3vgz_A 78 TLEVTQAIHNDLK--PFGATINNTTQTLWFGNT--VNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATN 153 (353)
T ss_dssp TCCEEEEEEESSC--CCSEEEETTTTEEEEEET--TTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTT
T ss_pred CCeEEEEEecCCC--cceEEECCCCCEEEEEec--CCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCC
Confidence 4567778877544 45999999975 888766 6789999999999999998886422 25677775 57
Q ss_pred EEEEEEee-CCEEEEEeCCCCcEEEEEe-cC-CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeee
Q 023864 161 KLFQVTWL-QKTGFIYDQNNLNKLEEFT-HQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRN 237 (276)
Q Consensus 161 ~LyqlTwk-~~~v~V~D~~tlk~i~~~~-~~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~ 237 (276)
++|+..+. ++.++++|.++.+.+.+++ .+ .+.+..+++||+.||+++..+.|+++|+++++++..+.+...+. -..
T Consensus 154 ~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~ 232 (353)
T 3vgz_A 154 TVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGK-EHF 232 (353)
T ss_dssp EEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSS-CCC
T ss_pred EEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCC-Ccc
Confidence 89999974 7889999999999999998 33 36788899999999999999999999999999999988855432 235
Q ss_pred eeeeEEE--CCEEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 238 LNELEFI--KGEVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 238 lNELE~i--dG~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
++.+.+. +++||+..... +.|.++|+++++.+
T Consensus 233 ~~~~~~s~dg~~l~~~~~~~-~~v~~~d~~~~~~~ 266 (353)
T 3vgz_A 233 FINISLDTARQRAFITDSKA-AEVLVVDTRNGNIL 266 (353)
T ss_dssp EEEEEEETTTTEEEEEESSS-SEEEEEETTTCCEE
T ss_pred cceEEECCCCCEEEEEeCCC-CEEEEEECCCCcEE
Confidence 6667776 34799999888 99999999997754
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-14 Score=132.45 Aligned_cols=166 Identities=16% Similarity=0.112 Sum_probs=136.6
Q ss_pred eeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCC
Q 023864 91 YTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK 170 (276)
Q Consensus 91 ~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~ 170 (276)
.+-+++++++.++..|-+|+.+.+ ++||..+. .++.+.+||++|++++.+++.+. -|-|++.++++||+.+ .++
T Consensus 73 ~Tgkv~~~~~l~~~~FgeGit~~g-~~ly~ltw--~~~~v~v~D~~t~~~~~ti~~~~--eG~glt~dg~~L~~Sd-Gs~ 146 (262)
T 3nol_A 73 ESGKTLQQIELGKRYFGEGISDWK-DKIVGLTW--KNGLGFVWNIRNLRQVRSFNYDG--EGWGLTHNDQYLIMSD-GTP 146 (262)
T ss_dssp TTCCEEEEEECCTTCCEEEEEEET-TEEEEEES--SSSEEEEEETTTCCEEEEEECSS--CCCCEEECSSCEEECC-SSS
T ss_pred CCCcEEEEEecCCccceeEEEEeC-CEEEEEEe--eCCEEEEEECccCcEEEEEECCC--CceEEecCCCEEEEEC-CCC
Confidence 366899999999999999999984 79999876 78999999999999999999876 4668999999999998 489
Q ss_pred EEEEEeCCCCcEEEEEecC-CCCee----EEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeee-------CCEeeee
Q 023864 171 TGFIYDQNNLNKLEEFTHQ-MKDGW----GLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRY-------KGREVRN 237 (276)
Q Consensus 171 ~v~V~D~~tlk~i~~~~~~-~~EGW----GLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~-------~g~pv~~ 237 (276)
++.++|++|++++++++.. .++.. .|...+..||+.+ .++.|.+|||+|++++++|.+.. ...+...
T Consensus 147 ~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~v 226 (262)
T 3nol_A 147 VLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDV 226 (262)
T ss_dssp EEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCC
T ss_pred eEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCc
Confidence 9999999999999999864 12221 2555456899988 79999999999999999999952 0112347
Q ss_pred eeeeEEEC--CEEEEEeCCCCCeEEEEe
Q 023864 238 LNELEFIK--GEVWANVWQVWPCIPYAY 263 (276)
Q Consensus 238 lNELE~id--G~lyANvw~s~d~I~vID 263 (276)
+|-+.|.. +++|+.. ..|+.+..|-
T Consensus 227 lNGIA~dp~~~~lfVTG-K~Wp~~~ev~ 253 (262)
T 3nol_A 227 LNGIAWDKEHHRLFVTG-KLWPKVFEIT 253 (262)
T ss_dssp EEEEEEETTTTEEEEEE-TTCSEEEEEE
T ss_pred eEEEEEcCCCCEEEEEC-CCCCceEEEE
Confidence 89999984 5899987 4558887664
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.8e-14 Score=129.19 Aligned_cols=167 Identities=19% Similarity=0.121 Sum_probs=138.1
Q ss_pred eeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCC
Q 023864 91 YTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK 170 (276)
Q Consensus 91 ~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~ 170 (276)
.+-+++++++.+...|-+|+.+.+ ++||..+. .++.+.+||++|++++.+++.+.. |-|++.++++||+.+ .++
T Consensus 51 ~tgkv~~~~~l~~~~fgeGi~~~~-~~ly~ltw--~~~~v~v~D~~tl~~~~ti~~~~~--Gwglt~dg~~L~vSd-gs~ 124 (243)
T 3mbr_X 51 ETGRILQRAEVPPPYFGAGIVAWR-DRLIQLTW--RNHEGFVYDLATLTPRARFRYPGE--GWALTSDDSHLYMSD-GTA 124 (243)
T ss_dssp TTCCEEEEEECCTTCCEEEEEEET-TEEEEEES--SSSEEEEEETTTTEEEEEEECSSC--CCEEEECSSCEEEEC-SSS
T ss_pred CCCCEEEEEeCCCCcceeEEEEeC-CEEEEEEe--eCCEEEEEECCcCcEEEEEeCCCC--ceEEeeCCCEEEEEC-CCC
Confidence 366899999999999999999984 89999876 889999999999999999998875 568898899999998 599
Q ss_pred EEEEEeCCCCcEEEEEecC-CCCee----EEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeee---C-----CEeee
Q 023864 171 TGFIYDQNNLNKLEEFTHQ-MKDGW----GLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRY---K-----GREVR 236 (276)
Q Consensus 171 ~v~V~D~~tlk~i~~~~~~-~~EGW----GLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~---~-----g~pv~ 236 (276)
++.++|++|++++++++.. .+++. .|.+.+..||+.+ .++.|.+|||+|++++++|.+.. + .....
T Consensus 125 ~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~ 204 (243)
T 3mbr_X 125 VIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTND 204 (243)
T ss_dssp EEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSS
T ss_pred eEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCC
Confidence 9999999999999999864 22332 2555677899988 79999999999999999999873 1 11334
Q ss_pred eeeeeEEEC--CEEEEEeCCCCCeEEEEeC
Q 023864 237 NLNELEFIK--GEVWANVWQVWPCIPYAYL 264 (276)
Q Consensus 237 ~lNELE~id--G~lyANvw~s~d~I~vIDp 264 (276)
.+|-+.|+. +++|+.- .-|+.+..|-.
T Consensus 205 vlNGIA~d~~~~~lfVTG-K~wp~~~~v~~ 233 (243)
T 3mbr_X 205 VLNGIAFDAEHDRLFVTG-KRWPMLYEIRL 233 (243)
T ss_dssp CEEEEEEETTTTEEEEEE-TTCSEEEEEEE
T ss_pred ceEEEEEcCCCCEEEEEC-CCCCcEEEEEE
Confidence 789999984 6899886 44588877653
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=4.3e-15 Score=140.57 Aligned_cols=173 Identities=5% Similarity=-0.194 Sum_probs=127.7
Q ss_pred eeeEEEEEEecCCCCCceEEEEecCC-EEEEEcC-----CC--CCCeEEEEeCCCCcEEEEeecC--------CCceEEE
Q 023864 91 YTIQVVNEFPHDPRAFTQGLLYAEND-TLFESTG-----LY--GRSSVRRVALETGKVEAINQME--------GSYFGEG 154 (276)
Q Consensus 91 ~t~~Vv~~~Phd~~aFTQGL~~~~dg-~LyeStG-----~y--g~S~I~~iDl~tgkv~~~~~l~--------~~~FgEG 154 (276)
.+.+++.++|....+ |+.+++|| +||++.. .+ ..+.|.+||++|+++++++++| ..+.+..
T Consensus 54 ~t~~v~~~i~vG~~P---~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia 130 (368)
T 1mda_H 54 GCGVTLGHSLGAFLS---LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIG 130 (368)
T ss_dssp TTTEEEEEEEECTTC---EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEE
T ss_pred CCCeEEEEEeCCCCC---ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEE
Confidence 367999999986554 99999997 5998762 11 3588999999999999999987 3455455
Q ss_pred EEEeCCEEEEEEee-CCEEEE--EeCCCCcEEE-----------------------------------------------
Q 023864 155 LTLLGEKLFQVTWL-QKTGFI--YDQNNLNKLE----------------------------------------------- 184 (276)
Q Consensus 155 it~~g~~LyqlTwk-~~~v~V--~D~~tlk~i~----------------------------------------------- 184 (276)
++.+|++||+.++. ++.+.+ +|+++.+.+.
T Consensus 131 ~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i 210 (368)
T 1mda_H 131 NCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQ 210 (368)
T ss_dssp ECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTS
T ss_pred EcCCCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeee
Confidence 55567899999987 688888 8885521110
Q ss_pred -------------------------------------EEecC---------CCCe---eEEeeCCCEEEEEC----C---
Q 023864 185 -------------------------------------EFTHQ---------MKDG---WGLATDGKVLFGSD----G--- 208 (276)
Q Consensus 185 -------------------------------------~~~~~---------~~EG---WGLT~Dg~~L~vSD----G--- 208 (276)
+++.. .+.| .++++||++||+++ |
T Consensus 211 ~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~ 290 (368)
T 1mda_H 211 NCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCL 290 (368)
T ss_dssp CBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTT
T ss_pred eCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCccc
Confidence 00000 0122 45889999999974 4
Q ss_pred --CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CC-EEEEEeC-CCCCeEEEEeCCCCcEEEEEE
Q 023864 209 --SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVWANVW-QVWPCIPYAYLQAFGSSLVYV 274 (276)
Q Consensus 209 --S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG-~lyANvw-~s~d~I~vIDp~T~~v~l~~~ 274 (276)
++.+.+||++|++++++|.++. .++.|++. || ++|+.++ .+ |.|+|||++|++++ .+|
T Consensus 291 ~~~~~~~ViD~~t~~vv~~i~vg~------~p~gi~~s~Dg~~l~va~~~~~-~~VsVID~~t~kvv-~~I 353 (368)
T 1mda_H 291 AAAENTSSVTASVGQTSGPISNGH------DSDAIIAAQDGASDNYANSAGT-EVLDIYDAASDQDQ-SSV 353 (368)
T ss_dssp SCEEEEEEEESSSCCEEECCEEEE------EECEEEECCSSSCEEEEEETTT-TEEEEEESSSCEEE-EEC
T ss_pred ccCCCEEEEECCCCeEEEEEECCC------CcceEEECCCCCEEEEEccCCC-CeEEEEECCCCcEE-EEE
Confidence 5788899999999999999986 45666676 55 4665555 79 99999999996554 766
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.1e-14 Score=142.41 Aligned_cols=166 Identities=13% Similarity=0.092 Sum_probs=130.4
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCE-EEEEcCCCCCCeEEEEeCC--CCcEEEEeecCCCceEEEEEEe------CCEE
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALE--TGKVEAINQMEGSYFGEGLTLL------GEKL 162 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~--tgkv~~~~~l~~~~FgEGit~~------g~~L 162 (276)
+.+++.++|... ...|+.|++||+ ||.+ + .+..|.+||+. +++++.+++.+..+ +++++. |+++
T Consensus 186 t~~v~~~i~~g~--~p~~v~~SpDGr~lyv~-~--~dg~V~viD~~~~t~~~v~~i~~G~~P--~~ia~s~~~~pDGk~l 258 (567)
T 1qks_A 186 TYEIKTVLDTGY--AVHISRLSASGRYLFVI-G--RDGKVNMIDLWMKEPTTVAEIKIGSEA--RSIETSKMEGWEDKYA 258 (567)
T ss_dssp TCCEEEEEECSS--CEEEEEECTTSCEEEEE-E--TTSEEEEEETTSSSCCEEEEEECCSEE--EEEEECCSTTCTTTEE
T ss_pred CCeEEEEEeCCC--CccceEECCCCCEEEEE-c--CCCeEEEEECCCCCCcEeEEEecCCCC--ceeEEccccCCCCCEE
Confidence 357888888743 456999999975 7865 4 46789999996 99999998887764 566665 6799
Q ss_pred EEEEeeCCEEEEEeCCCCcEEEEEecCC---------CC-----------------------------------------
Q 023864 163 FQVTWLQKTGFIYDQNNLNKLEEFTHQM---------KD----------------------------------------- 192 (276)
Q Consensus 163 yqlTwk~~~v~V~D~~tlk~i~~~~~~~---------~E----------------------------------------- 192 (276)
|+.++..+.+.|+|..|++++++++... +|
T Consensus 259 ~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i 338 (567)
T 1qks_A 259 IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI 338 (567)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE
T ss_pred EEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee
Confidence 9999999999999999999999987430 01
Q ss_pred -------eeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEe-eeCCEeeeeeeeeEEEC-CEEEEE-eCCCCCeEEE
Q 023864 193 -------GWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIV-RYKGREVRNLNELEFIK-GEVWAN-VWQVWPCIPY 261 (276)
Q Consensus 193 -------GWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V-~~~g~pv~~lNELE~id-G~lyAN-vw~s~d~I~v 261 (276)
+-++++||+++|+++ ++++|.+||.+|+++++.+.| +...+|-..+| +.-.+ |.+|+. ...+ +.|++
T Consensus 339 ~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g~-~~Vsv 416 (567)
T 1qks_A 339 SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGD-DSVAL 416 (567)
T ss_dssp ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-EEETTTEEEEEEEBSSS-SEEEE
T ss_pred eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-eECCCCCcEEEeCCCCC-CeEEE
Confidence 346899999999987 799999999999999999999 65444433445 21223 679964 4567 89999
Q ss_pred EeCCC
Q 023864 262 AYLQA 266 (276)
Q Consensus 262 IDp~T 266 (276)
||+++
T Consensus 417 id~~~ 421 (567)
T 1qks_A 417 IGTDP 421 (567)
T ss_dssp EECCT
T ss_pred ecCCC
Confidence 99998
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.1e-14 Score=131.91 Aligned_cols=165 Identities=17% Similarity=0.130 Sum_probs=134.7
Q ss_pred eeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCC
Q 023864 91 YTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK 170 (276)
Q Consensus 91 ~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~ 170 (276)
.+-++++++ .++..|-+|+.+.+ ++||..+. .++.+.+||++|++++++++.+.. |-|++.++++||+.+ .++
T Consensus 83 ~Tgkv~~~~-l~~~~FgeGit~~g-~~Ly~ltw--~~~~v~V~D~~Tl~~~~ti~~~~e--GwGLt~Dg~~L~vSd-Gs~ 155 (268)
T 3nok_A 83 ESAQPVWME-RLGNIFAEGLASDG-ERLYQLTW--TEGLLFTWSGMPPQRERTTRYSGE--GWGLCYWNGKLVRSD-GGT 155 (268)
T ss_dssp SCSSCSEEE-ECTTCCEEEEEECS-SCEEEEES--SSCEEEEEETTTTEEEEEEECSSC--CCCEEEETTEEEEEC-SSS
T ss_pred CCCcEEeEE-CCCCcceeEEEEeC-CEEEEEEc--cCCEEEEEECCcCcEEEEEeCCCc--eeEEecCCCEEEEEC-CCC
Confidence 466788888 78899999999985 79999876 789999999999999999998765 669999999999998 699
Q ss_pred EEEEEeCCCCcEEEEEecC-CCCee----EEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeee--------CCEeee
Q 023864 171 TGFIYDQNNLNKLEEFTHQ-MKDGW----GLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRY--------KGREVR 236 (276)
Q Consensus 171 ~v~V~D~~tlk~i~~~~~~-~~EGW----GLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~--------~g~pv~ 236 (276)
++.++|++|++++++++.. .++.. .|...+..||+++ .++.|.+|||+|++++++|.+.. ...+..
T Consensus 156 ~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~ 235 (268)
T 3nok_A 156 MLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEA 235 (268)
T ss_dssp EEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTC
T ss_pred EEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCC
Confidence 9999999999999999874 22332 2344344899988 79999999999999999999962 111335
Q ss_pred eeeeeEEEC--CEEEEEeCCCCCeEEEEe
Q 023864 237 NLNELEFIK--GEVWANVWQVWPCIPYAY 263 (276)
Q Consensus 237 ~lNELE~id--G~lyANvw~s~d~I~vID 263 (276)
.+|-+.|.. +++|+.- .-|+.+..|-
T Consensus 236 vlNGIA~dp~~~rlfVTG-K~Wp~~~ev~ 263 (268)
T 3nok_A 236 VLNGIAVEPGSGRIFMTG-KLWPRLFEVR 263 (268)
T ss_dssp CEEEEEECTTTCCEEEEE-TTCSEEEEEE
T ss_pred ceEEEEEcCCCCEEEEeC-CCCCceEEEE
Confidence 789999994 5799876 4458787764
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-14 Score=138.99 Aligned_cols=146 Identities=9% Similarity=-0.095 Sum_probs=117.3
Q ss_pred CEEEEEcCCCCC--CeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEe---------eCCEEEEEeCCCCcEEE
Q 023864 116 DTLFESTGLYGR--SSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW---------LQKTGFIYDQNNLNKLE 184 (276)
Q Consensus 116 g~LyeStG~yg~--S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTw---------k~~~v~V~D~~tlk~i~ 184 (276)
.++|++....+. +.|.+||++|++++.+++++..+ +..++.++++||+.++ .++.+.+||+.|+++++
T Consensus 85 ~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~ 163 (426)
T 3c75_H 85 RRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIA 163 (426)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEE
T ss_pred CEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEE
Confidence 579988763322 79999999999999999999887 6555556789999997 57899999999999999
Q ss_pred EEecC---------CCCeeEEeeCCCEEEEEC-C-CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeC
Q 023864 185 EFTHQ---------MKDGWGLATDGKVLFGSD-G-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVW 253 (276)
Q Consensus 185 ~~~~~---------~~EGWGLT~Dg~~L~vSD-G-S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw 253 (276)
+++.+ .++|..+++||++||++| + ++.|.+||+++++++++|.|.. .. . +...+.+.|+.++
T Consensus 164 ~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~~--~---~~p~g~~~~v~~~ 236 (426)
T 3c75_H 164 DIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--CY--H---IFPASPTVFYMNC 236 (426)
T ss_dssp EEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--EE--E---EEEEETTEEEEEE
T ss_pred EEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--ce--e---eccCCCcEEEEEc
Confidence 99864 467889999999999998 4 7899999999999999999953 21 1 1122345777777
Q ss_pred CCCCeEEEEeCCCCcEE
Q 023864 254 QVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 254 ~s~d~I~vIDp~T~~v~ 270 (276)
.+ +.+++||..++++.
T Consensus 237 ~d-G~~~~V~~~~~~v~ 252 (426)
T 3c75_H 237 RD-GSLARVDFADGETK 252 (426)
T ss_dssp TT-SSEEEEECCTTCCE
T ss_pred CC-CCEEEEECCCCcEE
Confidence 77 88888888665544
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.57 E-value=2.4e-13 Score=130.11 Aligned_cols=94 Identities=12% Similarity=-0.005 Sum_probs=76.9
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCE-EEEEcCC-----CC--CCeEEEEeCCCCcEEEEeecCC--------CceEEEE
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDT-LFESTGL-----YG--RSSVRRVALETGKVEAINQMEG--------SYFGEGL 155 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~-LyeStG~-----yg--~S~I~~iDl~tgkv~~~~~l~~--------~~FgEGi 155 (276)
+.+++.++|....+ ++.++|||+ ||++... .| .+.|++||++|++++.+++++. .+++-.+
T Consensus 68 t~~v~~~I~vG~~P---~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~ 144 (386)
T 3sjl_D 68 AGRVIGMIDGGFLP---NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSL 144 (386)
T ss_dssp TTEEEEEEEECSSC---EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEE
T ss_pred CCeEEEEEECCCCC---cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEE
Confidence 67899999986554 599999975 9987521 22 5789999999999999998874 5776666
Q ss_pred EEeCCEEEEEEee-CCEEEEEeCCCCcEEEEEec
Q 023864 156 TLLGEKLFQVTWL-QKTGFIYDQNNLNKLEEFTH 188 (276)
Q Consensus 156 t~~g~~LyqlTwk-~~~v~V~D~~tlk~i~~~~~ 188 (276)
+.+|.+||+.+.. ++.+.|+|.++++++++++.
T Consensus 145 spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v 178 (386)
T 3sjl_D 145 TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV 178 (386)
T ss_dssp CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred cCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC
Confidence 6678999999975 89999999999999888864
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=8.5e-13 Score=115.69 Aligned_cols=172 Identities=15% Similarity=0.056 Sum_probs=128.6
Q ss_pred eeEEEEEEecCCCC--------CceEEEEecCC-EEEEEcCCCCCCeEEEEeCCCCcEEEEee-cCCCceEEEEEEeCCE
Q 023864 92 TIQVVNEFPHDPRA--------FTQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQ-MEGSYFGEGLTLLGEK 161 (276)
Q Consensus 92 t~~Vv~~~Phd~~a--------FTQGL~~~~dg-~LyeStG~yg~S~I~~iDl~tgkv~~~~~-l~~~~FgEGit~~g~~ 161 (276)
+-+++.+++..... ...++.|++|| +||.+.. .....|.+||+++++++...+ .+..+.+..+..+++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 198 (353)
T 3vgz_A 120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGI-GKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR 198 (353)
T ss_dssp TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEE-SSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEec-CCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence 34567777763222 25789999986 5887652 256789999999999988877 4444443333335678
Q ss_pred EEEEEeeCCEEEEEeCCCCcEEEEEecCC------CCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEe
Q 023864 162 LFQVTWLQKTGFIYDQNNLNKLEEFTHQM------KDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGRE 234 (276)
Q Consensus 162 LyqlTwk~~~v~V~D~~tlk~i~~~~~~~------~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~p 234 (276)
||+.+. ++.+.+||.++.+.+.+++.+. ..+..+++||+.||+++ +++.|+++|++++++++.+.+.. +
T Consensus 199 l~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~ 274 (353)
T 3vgz_A 199 LYTTNA-DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE---S 274 (353)
T ss_dssp EEEECT-TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS---C
T ss_pred EEEEcC-CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC---C
Confidence 888775 8899999999999999988631 12356889999999988 57999999999999999998753 2
Q ss_pred eeeeeeeEEE-CC-EEEEEeCCCCCeEEEEeCCCCcEEEEEE
Q 023864 235 VRNLNELEFI-KG-EVWANVWQVWPCIPYAYLQAFGSSLVYV 274 (276)
Q Consensus 235 v~~lNELE~i-dG-~lyANvw~s~d~I~vIDp~T~~v~l~~~ 274 (276)
..+.+. || ++|+..+.. +.|.++|+++++++ ..+
T Consensus 275 ----~~~~~s~dg~~l~v~~~~~-~~v~~~d~~~~~~~-~~~ 310 (353)
T 3vgz_A 275 ----LAVLFNPARNEAYVTHRQA-GKVSVIDAKSYKVV-KTF 310 (353)
T ss_dssp ----CCEEEETTTTEEEEEETTT-TEEEEEETTTTEEE-EEE
T ss_pred ----ceEEECCCCCEEEEEECCC-CeEEEEECCCCeEE-EEE
Confidence 224454 44 699999999 99999999996543 443
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.51 E-value=7.5e-13 Score=123.80 Aligned_cols=144 Identities=5% Similarity=-0.163 Sum_probs=113.1
Q ss_pred CEEEEEcC-CCCCC-eEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEe---------eCCEEEEEeCCCCcEEE
Q 023864 116 DTLFESTG-LYGRS-SVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW---------LQKTGFIYDQNNLNKLE 184 (276)
Q Consensus 116 g~LyeStG-~yg~S-~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTw---------k~~~v~V~D~~tlk~i~ 184 (276)
.++|...+ .++.- .|.+||+++++++.+++.+..+ +-.++.++++||+.+. .++.+.+||++++++++
T Consensus 33 ~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~ 111 (373)
T 2mad_H 33 RRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIA 111 (373)
T ss_pred CEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEE
Confidence 35787664 22222 8999999999999998888776 5555556789999985 47889999999999999
Q ss_pred EEecC---------CCCeeEEeeCCCEEEEEC-C-CceEEEEcCCCCcEEEE-EEeeeCCEeeeeeeeeEEECCEEEEEe
Q 023864 185 EFTHQ---------MKDGWGLATDGKVLFGSD-G-SSMLYQIDPQTLKVIRK-DIVRYKGREVRNLNELEFIKGEVWANV 252 (276)
Q Consensus 185 ~~~~~---------~~EGWGLT~Dg~~L~vSD-G-S~~L~viDp~t~~vi~~-I~V~~~g~pv~~lNELE~idG~lyANv 252 (276)
+++.+ .+++..+++||++||+++ + +++|++|| ++++++++ |.+.. . +. +...+++.|+.+
T Consensus 112 ~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~--~-~~----~~~~~~~~~~~~ 183 (373)
T 2mad_H 112 DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT--C-YH----IHPGAPSTFYLL 183 (373)
T ss_pred EEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc--e-EE----EEeCCCceEEEE
Confidence 99864 356778999999999988 4 68999999 99999999 88753 1 11 112244688888
Q ss_pred CCCCCeEEEEeCCCCcEE
Q 023864 253 WQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 253 w~s~d~I~vIDp~T~~v~ 270 (276)
+.+ +.+++||. +++++
T Consensus 184 ~~d-g~~~~vd~-~g~~~ 199 (373)
T 2mad_H 184 CAQ-GGLAKTDH-AGGAA 199 (373)
T ss_pred cCC-CCEEEEEC-CCcEE
Confidence 888 99999999 87765
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.50 E-value=6e-13 Score=122.59 Aligned_cols=170 Identities=9% Similarity=-0.012 Sum_probs=124.3
Q ss_pred eeEEEEEEecCCCCCceEEEEecCC-EEEEEcCC-----C--CCCeEEEEeCCCCcEEEEeecCCCc-----eEEEEEE-
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAEND-TLFESTGL-----Y--GRSSVRRVALETGKVEAINQMEGSY-----FGEGLTL- 157 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg-~LyeStG~-----y--g~S~I~~iDl~tgkv~~~~~l~~~~-----FgEGit~- 157 (276)
+.+++.++|... .. +++|++|| +||.+.-. . ..+.|.+||+++++++++++++... .+.++++
T Consensus 40 t~~~~~~i~~g~--~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~s 116 (361)
T 2oiz_A 40 NGKFLGMVPTAF--NG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQT 116 (361)
T ss_dssp TCCEEEEEECCE--EE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEEC
T ss_pred CCeEEEEecCCC--CC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEEC
Confidence 345677888643 33 99999997 58876421 1 2467999999999999999876321 2335555
Q ss_pred -eCCEEEEEEee-CCEEEEEeCCCCcEEEE-EecCC--------------------------------------------
Q 023864 158 -LGEKLFQVTWL-QKTGFIYDQNNLNKLEE-FTHQM-------------------------------------------- 190 (276)
Q Consensus 158 -~g~~LyqlTwk-~~~v~V~D~~tlk~i~~-~~~~~-------------------------------------------- 190 (276)
++++||+.++. ++.+.+||.++.+++++ ++.+.
T Consensus 117 pdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~ 196 (361)
T 2oiz_A 117 TDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMF 196 (361)
T ss_dssp TTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCS
T ss_pred CCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceE
Confidence 67899999996 79999999999888777 32100
Q ss_pred --------------------------------------------------------CCe---eEEeeCCCEEEEEC---C
Q 023864 191 --------------------------------------------------------KDG---WGLATDGKVLFGSD---G 208 (276)
Q Consensus 191 --------------------------------------------------------~EG---WGLT~Dg~~L~vSD---G 208 (276)
+.| .++++||+++|+++ |
T Consensus 197 ~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~ 276 (361)
T 2oiz_A 197 SVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDG 276 (361)
T ss_dssp CTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSC
T ss_pred cCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCC
Confidence 011 45677889999963 2
Q ss_pred --------CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CC-EEEEEeCCCCCeEEEEeCCCCc-EEEEEE
Q 023864 209 --------SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVWANVWQVWPCIPYAYLQAFG-SSLVYV 274 (276)
Q Consensus 209 --------S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG-~lyANvw~s~d~I~vIDp~T~~-v~l~~~ 274 (276)
+++|++||++|+++++++.++. +..+.+. || +||+.++ +.|.+||++|++ .++++|
T Consensus 277 ~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-------p~~ia~spdg~~l~v~n~---~~v~v~D~~t~~l~~~~~i 343 (361)
T 2oiz_A 277 KEGTHKFPAAEIWVMDTKTKQRVARIPGRD-------ALSMTIDQQRNLMLTLDG---GNVNVYDISQPEPKLLRTI 343 (361)
T ss_dssp CTTCTTCCCSEEEEEETTTTEEEEEEECTT-------CCEEEEETTTTEEEEECS---SCEEEEECSSSSCEEEEEE
T ss_pred CcccccCCCceEEEEECCCCcEEEEEecCC-------eeEEEECCCCCEEEEeCC---CeEEEEECCCCcceeeEEe
Confidence 5689999999999999999873 4556666 44 7999886 779999999961 444765
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=8.2e-12 Score=108.60 Aligned_cols=159 Identities=9% Similarity=0.038 Sum_probs=114.6
Q ss_pred CCceEEEEecC-CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEee--CCEEEEEeCCC
Q 023864 105 AFTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWL--QKTGFIYDQNN 179 (276)
Q Consensus 105 aFTQGL~~~~d-g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk--~~~v~V~D~~t 179 (276)
....|++++++ +.||.+.. +.+.|.++|++..........+ ...+.|++++ +++||+.++. .+++.+++.+.
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~--~~~~I~~~~~~g~~~~~~~~~~-~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg 155 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDS--QLDRIEVAKMDGTQRRVLFDTG-LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG 155 (267)
T ss_dssp CCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEECSS-CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS
T ss_pred CCccEEEEEecCCeEEEEEC--CCCEEEEEEcCCCCEEEEEECC-CCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC
Confidence 45689999985 78999865 7889999999754322222222 2357789997 5899999997 68999998764
Q ss_pred C--cEEEEEecCCCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCCC
Q 023864 180 L--NKLEEFTHQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQVW 256 (276)
Q Consensus 180 l--k~i~~~~~~~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s~ 256 (276)
. +.+.......|.|..+++|+++||++| ++++|+++|+++.+....+. .. ..+..|...+|+||+..|.+
T Consensus 156 ~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~--~~----~~P~gi~~d~~~lyva~~~~- 228 (267)
T 1npe_A 156 TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE--GL----QYPFAVTSYGKNLYYTDWKT- 228 (267)
T ss_dssp CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE--CC----CSEEEEEEETTEEEEEETTT-
T ss_pred CCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec--CC----CCceEEEEeCCEEEEEECCC-
Confidence 2 222211122456777888899999999 78999999998754433332 11 24455677789999999999
Q ss_pred CeEEEEeCCCCcEEEEEE
Q 023864 257 PCIPYAYLQAFGSSLVYV 274 (276)
Q Consensus 257 d~I~vIDp~T~~v~l~~~ 274 (276)
++|.+||+++|++ +..|
T Consensus 229 ~~v~~~d~~~g~~-~~~i 245 (267)
T 1npe_A 229 NSVIAMDLAISKE-MDTF 245 (267)
T ss_dssp TEEEEEETTTTEE-EEEE
T ss_pred CeEEEEeCCCCCc-eEEE
Confidence 9999999999654 4555
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.2e-12 Score=124.91 Aligned_cols=170 Identities=5% Similarity=-0.091 Sum_probs=128.8
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCE-EEEEcCCCCCCeEEEEeC--CCCcEEEEeecCCCceEEEEEE----eCCEEEE
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVAL--ETGKVEAINQMEGSYFGEGLTL----LGEKLFQ 164 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl--~tgkv~~~~~l~~~~FgEGit~----~g~~Lyq 164 (276)
+.+++++++.... ..++.|++||+ ||.+.. + +.|++||+ ++++++.+++.+..+.+..++. ++++||+
T Consensus 168 t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~--d-~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v 242 (543)
T 1nir_A 168 SKKIVKVIDTGYA--VHISRMSASGRYLLVIGR--D-ARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIA 242 (543)
T ss_dssp TCCEEEEEECSTT--EEEEEECTTSCEEEEEET--T-SEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEE
T ss_pred CceEEEEEecCcc--cceEEECCCCCEEEEECC--C-CeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEE
Confidence 4467888885333 56999999985 665433 4 99999999 8999999988777665444444 5679999
Q ss_pred EEeeCCEEEEEeCCCCcEEEEEecCC---------CC----eeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEE--EEEe
Q 023864 165 VTWLQKTGFIYDQNNLNKLEEFTHQM---------KD----GWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIR--KDIV 228 (276)
Q Consensus 165 lTwk~~~v~V~D~~tlk~i~~~~~~~---------~E----GWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~--~I~V 228 (276)
.++.++.+.++|.+|++++++++... ++ +..+++|++.+|+++ ++++|.++|.++.+.++ +|.+
T Consensus 243 ~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~ 322 (543)
T 1nir_A 243 GAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA 322 (543)
T ss_dssp EEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEEC
T ss_pred EEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEecc
Confidence 99999999999999999999997520 12 344678899999988 79999999999876554 4544
Q ss_pred eeCCEeeeeeeeeEEE-CC-EEEEEeCCCCCeEEEEeCCCCcEEEEEE
Q 023864 229 RYKGREVRNLNELEFI-KG-EVWANVWQVWPCIPYAYLQAFGSSLVYV 274 (276)
Q Consensus 229 ~~~g~pv~~lNELE~i-dG-~lyANvw~s~d~I~vIDp~T~~v~l~~~ 274 (276)
+. .+..+.+. || ++|+....+ |.|.+||++|++ .++.+
T Consensus 323 ~~------~~~~~~~spdg~~l~va~~~~-~~v~v~D~~tg~-l~~~i 362 (543)
T 1nir_A 323 AP------FLHDGGWDSSHRYFMTAANNS-NKVAVIDSKDRR-LSALV 362 (543)
T ss_dssp CS------SCCCEEECTTSCEEEEEEGGG-TEEEEEETTTTE-EEEEE
T ss_pred Cc------CccCceECCCCCEEEEEecCC-CeEEEEECCCCe-EEEee
Confidence 32 33344455 45 599888888 999999999965 44554
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.9e-12 Score=128.50 Aligned_cols=113 Identities=11% Similarity=0.032 Sum_probs=96.4
Q ss_pred EecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEE--eCCEEEEEEeeCCEEEEEeCC--CCcEEEEEe
Q 023864 112 YAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL--LGEKLFQVTWLQKTGFIYDQN--NLNKLEEFT 187 (276)
Q Consensus 112 ~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~--~g~~LyqlTwk~~~v~V~D~~--tlk~i~~~~ 187 (276)
.++++.+|++.. +.+.|.+||++|++++.+++++..+. |+++ +++.+|+.+ .++.+.+||.. +++++.+++
T Consensus 163 ~d~~~~~~V~~~--~~~~V~viD~~t~~v~~~i~~g~~p~--~v~~SpDGr~lyv~~-~dg~V~viD~~~~t~~~v~~i~ 237 (567)
T 1qks_A 163 WDLENLFSVTLR--DAGQIALIDGSTYEIKTVLDTGYAVH--ISRLSASGRYLFVIG-RDGKVNMIDLWMKEPTTVAEIK 237 (567)
T ss_dssp CCGGGEEEEEET--TTTEEEEEETTTCCEEEEEECSSCEE--EEEECTTSCEEEEEE-TTSEEEEEETTSSSCCEEEEEE
T ss_pred cCCCceEEEEeC--CCCeEEEEECCCCeEEEEEeCCCCcc--ceEECCCCCEEEEEc-CCCeEEEEECCCCCCcEeEEEe
Confidence 445568888766 88999999999999999999887755 5555 567899877 57899999996 999999998
Q ss_pred cC-CCCeeEEe----eCCCEEEEEC-CCceEEEEcCCCCcEEEEEEee
Q 023864 188 HQ-MKDGWGLA----TDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVR 229 (276)
Q Consensus 188 ~~-~~EGWGLT----~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~ 229 (276)
.+ .++|..++ +||++||++| .+++|.++|.+|++++++|.++
T Consensus 238 ~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~ 285 (567)
T 1qks_A 238 IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTR 285 (567)
T ss_dssp CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECC
T ss_pred cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecc
Confidence 75 45777888 6999999999 6899999999999999999985
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.47 E-value=9.9e-13 Score=125.83 Aligned_cols=146 Identities=10% Similarity=-0.062 Sum_probs=108.5
Q ss_pred cC-CEEEEEcCC--CCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEe---------eCCEEEEEeCCCCc
Q 023864 114 EN-DTLFESTGL--YGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW---------LQKTGFIYDQNNLN 181 (276)
Q Consensus 114 ~d-g~LyeStG~--yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTw---------k~~~v~V~D~~tlk 181 (276)
|| .++|++... ...+.|.++|.+|++++.+++.+..+ +-.++.++.+||+.++ .++.+.+||++|++
T Consensus 42 pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~ 120 (386)
T 3sjl_D 42 PDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL 120 (386)
T ss_dssp CCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe
Confidence 44 468887652 12679999999999999999999887 3333334689999996 46889999999999
Q ss_pred EEEEEecC---------CCCeeEEeeCCCEEEEEC-C-CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECC-EEE
Q 023864 182 KLEEFTHQ---------MKDGWGLATDGKVLFGSD-G-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKG-EVW 249 (276)
Q Consensus 182 ~i~~~~~~---------~~EGWGLT~Dg~~L~vSD-G-S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG-~ly 249 (276)
++++++.+ .+.+..+++||++||++| + ++.|.+||.++++++++|.+.. ... ..-.+. .++
T Consensus 121 v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~~~-----~~P~g~~~~~ 193 (386)
T 3sjl_D 121 PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--CYH-----IFPTAPDTFF 193 (386)
T ss_dssp EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--EEE-----EEEEETTEEE
T ss_pred EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--cce-----eecCCCceeE
Confidence 99999864 356788999999999998 3 7899999999999999998852 210 011122 334
Q ss_pred EEeCCCCCeEEEEeCCC-CcE
Q 023864 250 ANVWQVWPCIPYAYLQA-FGS 269 (276)
Q Consensus 250 ANvw~s~d~I~vIDp~T-~~v 269 (276)
+.+ .+ +.+++||.++ +++
T Consensus 194 ~~~-~D-G~~~~v~~~~~g~v 212 (386)
T 3sjl_D 194 MHC-RD-GSLAKVAFGTEGTP 212 (386)
T ss_dssp EEE-TT-SCEEEEECCSSSCC
T ss_pred EEC-CC-CCEEEEECCCCCeE
Confidence 444 45 6777777765 443
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.47 E-value=9.4e-12 Score=111.38 Aligned_cols=164 Identities=17% Similarity=0.200 Sum_probs=130.2
Q ss_pred eEEEEEEecCCCCCceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeC
Q 023864 93 IQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQ 169 (276)
Q Consensus 93 ~~Vv~~~Phd~~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~ 169 (276)
.+++.++++... ..++.|++||+ ||.+++ .+..|++||+++++++.....+..+. ++++. +++||+....+
T Consensus 22 ~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~--~d~~i~v~d~~~~~~~~~~~~~~~v~--~~~~spdg~~l~~~~~~~ 95 (391)
T 1l0q_A 22 NKVTATIPVGSN--PMGAVISPDGTKVYVANA--HSNDVSIIDTATNNVIATVPAGSSPQ--GVAVSPDGKQVYVTNMAS 95 (391)
T ss_dssp TEEEEEEECSSS--EEEEEECTTSSEEEEEEG--GGTEEEEEETTTTEEEEEEECSSSEE--EEEECTTSSEEEEEETTT
T ss_pred CeEEEEeecCCC--cceEEECCCCCEEEEECC--CCCeEEEEECCCCeEEEEEECCCCcc--ceEECCCCCEEEEEECCC
Confidence 367778877433 57999999975 777665 67899999999999999888877544 55554 67899999889
Q ss_pred CEEEEEeCCCCcEEEEEecC-CCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CC
Q 023864 170 KTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG 246 (276)
Q Consensus 170 ~~v~V~D~~tlk~i~~~~~~-~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG 246 (276)
+.+.+||.++.+.+..+... ...+..+++||+.||++. +...|+++|+++.+.+..+..+. .++.+.+. +|
T Consensus 96 ~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~------~~~~~~~~~dg 169 (391)
T 1l0q_A 96 STLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR------SPKGIAVTPDG 169 (391)
T ss_dssp TEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS------SEEEEEECTTS
T ss_pred CEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC------CcceEEECCCC
Confidence 99999999999999988765 234455678999998776 58899999999999988887753 34556665 44
Q ss_pred -EEEEEeCCCCCeEEEEeCCCCcE
Q 023864 247 -EVWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 247 -~lyANvw~s~d~I~vIDp~T~~v 269 (276)
+||+..... +.|.++|+++++.
T Consensus 170 ~~l~~~~~~~-~~v~~~d~~~~~~ 192 (391)
T 1l0q_A 170 TKVYVANFDS-MSISVIDTVTNSV 192 (391)
T ss_dssp SEEEEEETTT-TEEEEEETTTTEE
T ss_pred CEEEEEeCCC-CEEEEEECCCCeE
Confidence 698888788 9999999999654
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.3e-12 Score=124.85 Aligned_cols=169 Identities=12% Similarity=0.071 Sum_probs=129.1
Q ss_pred eeEEEEEEecCCCCCceEEEEec----CCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCC----------CceEEEEE
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAE----NDT-LFESTGLYGRSSVRRVALETGKVEAINQMEG----------SYFGEGLT 156 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~----dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~----------~~FgEGit 156 (276)
+.+++.++++. ....++.|+| ||+ ||.+ .|..+.|.+||.+|+++++.+++.. .....++.
T Consensus 211 t~~~~~~i~~g--~~p~~va~sp~~~~dg~~l~v~--~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~ 286 (543)
T 1nir_A 211 EPTKVAEIKIG--IEARSVESSKFKGYEDRYTIAG--AYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAII 286 (543)
T ss_dssp SCEEEEEEECC--SEEEEEEECCSTTCTTTEEEEE--EEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEE
T ss_pred CCcEEEEEecC--CCcceEEeCCCcCCCCCEEEEE--EccCCeEEEEeccccccceeecccCcccCccccccCCceEEEE
Confidence 45788999974 4457999999 875 7754 3578999999999999999887632 22344566
Q ss_pred Ee--CCEEEEEEeeCCEEEEEeCCCCcEEE--EEecC-CCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeee
Q 023864 157 LL--GEKLFQVTWLQKTGFIYDQNNLNKLE--EFTHQ-MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRY 230 (276)
Q Consensus 157 ~~--g~~LyqlTwk~~~v~V~D~~tlk~i~--~~~~~-~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~ 230 (276)
.. ++++|+....++++.++|..+.+.+. +++.+ .+.+.++++||++||+++ ++++|.++|++++++++++.++.
T Consensus 287 ~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~ 366 (543)
T 1nir_A 287 ASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK 366 (543)
T ss_dssp ECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred ECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCC
Confidence 64 67888888889999999999877655 66543 456778999999999977 79999999999999999999875
Q ss_pred CCEeeeeeeeeEEEC-CEEEEEeC-CCCCeEEEEeCCC
Q 023864 231 KGREVRNLNELEFIK-GEVWANVW-QVWPCIPYAYLQA 266 (276)
Q Consensus 231 ~g~pv~~lNELE~id-G~lyANvw-~s~d~I~vIDp~T 266 (276)
..++-...| +...+ |.+||..- .+ +.|.+||.++
T Consensus 367 ~ph~g~g~~-~~~p~~g~~~~s~~~~d-~~V~v~d~~~ 402 (543)
T 1nir_A 367 TPHPGRGAN-FVHPKYGPVWSTSHLGD-GSISLIGTDP 402 (543)
T ss_dssp SBCCTTCEE-EEETTTEEEEEEEBSSS-SEEEEEECCT
T ss_pred CCCCCCCcc-cCCCCCccEEEeccCCC-ceEEEEEeCC
Confidence 333322333 21223 78998875 46 8999999998
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.3e-11 Score=108.86 Aligned_cols=165 Identities=13% Similarity=0.152 Sum_probs=130.2
Q ss_pred eEEEEEEecCCCCCceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeC
Q 023864 93 IQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQ 169 (276)
Q Consensus 93 ~~Vv~~~Phd~~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~ 169 (276)
-+++..+++.. -..++.|++||+ ||.+++ ++..|++||+++++.+.....+..+ .++++. ++.||+....+
T Consensus 106 ~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~--~~~~v~~~d~~~~~~~~~~~~~~~~--~~~~~~~dg~~l~~~~~~~ 179 (391)
T 1l0q_A 106 NTVAGTVKTGK--SPLGLALSPDGKKLYVTNN--GDKTVSVINTVTKAVINTVSVGRSP--KGIAVTPDGTKVYVANFDS 179 (391)
T ss_dssp TEEEEEEECSS--SEEEEEECTTSSEEEEEET--TTTEEEEEETTTTEEEEEEECCSSE--EEEEECTTSSEEEEEETTT
T ss_pred CeEEEEEeCCC--CcceEEECCCCCEEEEEeC--CCCEEEEEECCCCcEEEEEecCCCc--ceEEECCCCCEEEEEeCCC
Confidence 35667777643 347999999875 767655 7789999999999998888877665 566665 56899999999
Q ss_pred CEEEEEeCCCCcEEEEEecC-CCCeeEEeeCCCEEEEEC---CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-
Q 023864 170 KTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSD---GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI- 244 (276)
Q Consensus 170 ~~v~V~D~~tlk~i~~~~~~-~~EGWGLT~Dg~~L~vSD---GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i- 244 (276)
+.+.+||..+.+.+..++.. ...+..+++||+.|++++ +...|+++|+++.+.+..+.... .++.+.+.
T Consensus 180 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~------~~~~~~~s~ 253 (391)
T 1l0q_A 180 MSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP------DPAGIAVTP 253 (391)
T ss_dssp TEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS------SEEEEEECT
T ss_pred CEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC------CccEEEEcc
Confidence 99999999999999888764 234455788999999977 68899999999999988887653 23455665
Q ss_pred CC-EEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 245 KG-EVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 245 dG-~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
|| +||+..-.. +.|.++|.++++..
T Consensus 254 dg~~l~~s~~~d-~~v~v~d~~~~~~~ 279 (391)
T 1l0q_A 254 DGKKVYVALSFX-NTVSVIDTATNTIT 279 (391)
T ss_dssp TSSEEEEEETTT-TEEEEEETTTTEEE
T ss_pred CCCEEEEEcCCC-CEEEEEECCCCcEE
Confidence 44 699888777 99999999996543
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.6e-12 Score=110.32 Aligned_cols=172 Identities=11% Similarity=0.127 Sum_probs=126.1
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCE-EEEEcCCCCCCe-EEEEeCCCC-cEEEE--eecCCCceEEEEEEe--CCEEEE
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSS-VRRVALETG-KVEAI--NQMEGSYFGEGLTLL--GEKLFQ 164 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~-LyeStG~yg~S~-I~~iDl~tg-kv~~~--~~l~~~~FgEGit~~--g~~Lyq 164 (276)
+.++++++++.... .++.|+|||+ ||.+.. +... |.+||++.. ++... ..++....+.++++. ++.||+
T Consensus 117 ~~~~~~~~~~~~~~--~~~~~spdg~~l~~~~~--~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v 192 (331)
T 3u4y_A 117 KNKFISTIPIPYDA--VGIAISPNGNGLILIDR--SSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFV 192 (331)
T ss_dssp TTEEEEEEECCTTE--EEEEECTTSSCEEEEEE--TTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEE
T ss_pred CCCeEEEEECCCCc--cceEECCCCCEEEEEec--CCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEE
Confidence 34677888874433 7999999985 887655 5556 999988753 33211 222333335677775 457999
Q ss_pred EEeeCCEEEEEeCCCCcE---EEEEecC-CCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcE--EEEEEee--eCCEee
Q 023864 165 VTWLQKTGFIYDQNNLNK---LEEFTHQ-MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKV--IRKDIVR--YKGREV 235 (276)
Q Consensus 165 lTwk~~~v~V~D~~tlk~---i~~~~~~-~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~v--i~~I~V~--~~g~pv 235 (276)
..+.++.+.+||.++.+. +.+++.+ .+.+..+++||++||+++ +.+.|+++|++++++ +..+... .++.+.
T Consensus 193 ~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 272 (331)
T 3u4y_A 193 ANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPL 272 (331)
T ss_dssp EETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGG
T ss_pred EeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCc
Confidence 999999999999999998 8888755 457778899999999988 688999999999988 4444433 234444
Q ss_pred eeeeeeEEE-CC-EEEEEeCCCCCeEEEEeCCCCc
Q 023864 236 RNLNELEFI-KG-EVWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 236 ~~lNELE~i-dG-~lyANvw~s~d~I~vIDp~T~~ 268 (276)
...|.+.+. || +||+..... +.|.++|.++..
T Consensus 273 ~~~~~~~~spdg~~l~v~~~~~-~~v~v~d~~~~~ 306 (331)
T 3u4y_A 273 FGANQMALNKTETKLFISANIS-RELKVFTISGKV 306 (331)
T ss_dssp TTCCCEEECTTSSEEEEEETTT-TEEEEEETTSCE
T ss_pred ccccceEECCCCCEEEEecCCC-CcEEEEEecCCc
Confidence 444667776 44 699999888 999999998843
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.44 E-value=6.3e-13 Score=115.98 Aligned_cols=151 Identities=9% Similarity=-0.001 Sum_probs=117.4
Q ss_pred EEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC--CceEEEEEEe--CCEEEEEEeeCCEEEEEeCCCCcEEE
Q 023864 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG--SYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLNKLE 184 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~--~~FgEGit~~--g~~LyqlTwk~~~v~V~D~~tlk~i~ 184 (276)
|+.+.+++++|.+++ +...|.+||+++++++..++++. .+. ++++. ++.+|+....++.+.+||.++.+.+.
T Consensus 4 g~~~~~~~~~~v~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~--~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~ 79 (349)
T 1jmx_B 4 GPALKAGHEYMIVTN--YPNNLHVVDVASDTVYKSCVMPDKFGPG--TAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF 79 (349)
T ss_dssp CCCCCTTCEEEEEEE--TTTEEEEEETTTTEEEEEEECSSCCSSC--EEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred cccccCCCEEEEEeC--CCCeEEEEECCCCcEEEEEecCCCCCCc--eeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEE
Confidence 666777789998877 78999999999999999988887 544 55554 56899999999999999999999999
Q ss_pred EEecCC--------CCeeEEeeCCCEEEEECC------------CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE
Q 023864 185 EFTHQM--------KDGWGLATDGKVLFGSDG------------SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI 244 (276)
Q Consensus 185 ~~~~~~--------~EGWGLT~Dg~~L~vSDG------------S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i 244 (276)
+++.+. +.+..+++||+.||+++. .+.|+++|++++++.+.+.+..... .+..+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~---~~~~~~~s 156 (349)
T 1jmx_B 80 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPR---QVYLMRAA 156 (349)
T ss_dssp EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCS---SCCCEEEC
T ss_pred EEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCC---cccceeEC
Confidence 887642 467788999999999773 4899999999976655444433222 34445554
Q ss_pred -CCEEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 245 -KGEVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 245 -dG~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
||++|+. . +.|.++|+++++++
T Consensus 157 ~dg~l~~~---~-~~i~~~d~~~~~~~ 179 (349)
T 1jmx_B 157 DDGSLYVA---G-PDIYKMDVKTGKYT 179 (349)
T ss_dssp TTSCEEEE---S-SSEEEECTTTCCEE
T ss_pred CCCcEEEc---c-CcEEEEeCCCCcee
Confidence 6778884 4 56999999997754
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=5.3e-13 Score=126.24 Aligned_cols=137 Identities=7% Similarity=-0.185 Sum_probs=111.5
Q ss_pred CEEEEEcCCCCCC----eEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEe---------eCCEEEEEeCCCCcE
Q 023864 116 DTLFESTGLYGRS----SVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW---------LQKTGFIYDQNNLNK 182 (276)
Q Consensus 116 g~LyeStG~yg~S----~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTw---------k~~~v~V~D~~tlk~ 182 (276)
.++|++.. +.+ .|.+||++|++++.+++++..+ +-.++.++.++|+.++ +++.+.+||+.|+++
T Consensus 32 ~~~yV~~~--~~~~~~d~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v 108 (368)
T 1mda_H 32 RRSHITLP--AYFAGTTENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP 108 (368)
T ss_dssp TEEEEEEC--TTTCSSEEEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE
T ss_pred CeEEEECC--ccCCccceEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE
Confidence 57787655 444 8999999999999999999887 5555556789999995 689999999999999
Q ss_pred EEEEecC---------CCCeeEEeeCCCEEEEEC-C-CceEEE--EcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEE
Q 023864 183 LEEFTHQ---------MKDGWGLATDGKVLFGSD-G-SSMLYQ--IDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVW 249 (276)
Q Consensus 183 i~~~~~~---------~~EGWGLT~Dg~~L~vSD-G-S~~L~v--iDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~ly 249 (276)
+++++.+ .|++..+++||++||++| + ++.|.+ ||++| +++|.+... + + +...++..|
T Consensus 109 v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~---~-~---~~p~g~~~~ 178 (368)
T 1mda_H 109 IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC---F-H---IHPGAAATH 178 (368)
T ss_dssp EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC---C-C---CEEEETTEE
T ss_pred EEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc---e-E---EccCCCeEE
Confidence 9999864 478999999999999998 4 678999 99999 678877531 1 1 223445688
Q ss_pred EEeCCCCCeEEEEeCCC
Q 023864 250 ANVWQVWPCIPYAYLQA 266 (276)
Q Consensus 250 ANvw~s~d~I~vIDp~T 266 (276)
+.++.+ +.+++||.++
T Consensus 179 ~~~~~d-g~~~~vd~~~ 194 (368)
T 1mda_H 179 YLGSCP-ASLAASDLAA 194 (368)
T ss_dssp ECCCCT-TSCEEEECCS
T ss_pred EEEcCC-CCEEEEECcc
Confidence 888788 9999999998
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=3.6e-11 Score=108.05 Aligned_cols=161 Identities=11% Similarity=0.077 Sum_probs=120.4
Q ss_pred CceEEEEecCCEEEEEcCCCCC------------------------CeEEEEeCCCCcEEEEeecCCCceEEEEEEe-CC
Q 023864 106 FTQGLLYAENDTLFESTGLYGR------------------------SSVRRVALETGKVEAINQMEGSYFGEGLTLL-GE 160 (276)
Q Consensus 106 FTQGL~~~~dg~LyeStG~yg~------------------------S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~-g~ 160 (276)
...|++++++|+||.+.. +. +.|.++|.++|+++....-+.-..+.|++++ ++
T Consensus 25 ~v~~va~d~~G~l~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 25 QVSGVALDSKNNLVIFHR--GDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CEEEEEECTTCCEEEEEC--TTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred CceEEEECCCCCEEEEeC--CCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 356999999999998755 33 4799999999999766543443467899997 46
Q ss_pred EEEEEEeeCCEEEEEeCCCCc-EEEEEec---------C--CCCeeEEeeCCCEEEEEC--CCceEEEEcCCCCcEEEEE
Q 023864 161 KLFQVTWLQKTGFIYDQNNLN-KLEEFTH---------Q--MKDGWGLATDGKVLFGSD--GSSMLYQIDPQTLKVIRKD 226 (276)
Q Consensus 161 ~LyqlTwk~~~v~V~D~~tlk-~i~~~~~---------~--~~EGWGLT~Dg~~L~vSD--GS~~L~viDp~t~~vi~~I 226 (276)
+||+....++++.+||++... .+.++.. . .|.|..+.+++..||++| +.++|.++| .+++.+..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 899999999999999987543 5555531 1 234444555578899999 488999999 557777766
Q ss_pred EeeeCC-----EeeeeeeeeEEE-C-CEEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 227 IVRYKG-----REVRNLNELEFI-K-GEVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 227 ~V~~~g-----~pv~~lNELE~i-d-G~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
.....+ ..+..++-|.+. + |.||+..+.. ++|.++|+++|+.+
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~-~~I~~~~~~~G~~~ 231 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADREN-GRIQCFKTDTKEFV 231 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTT-TEEEEEETTTCCEE
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCC-CEEEEEECCCCcEE
Confidence 443222 245567888886 4 8999999999 99999999986653
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.40 E-value=3e-11 Score=105.29 Aligned_cols=132 Identities=12% Similarity=0.080 Sum_probs=98.1
Q ss_pred eEEEEEEecCCCCCceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCC-----ceEEEEEE--eCCEEEE
Q 023864 93 IQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGS-----YFGEGLTL--LGEKLFQ 164 (276)
Q Consensus 93 ~~Vv~~~Phd~~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~-----~FgEGit~--~g~~Lyq 164 (276)
.+++++++.....-..++.|++||+ +|.+.. +...|.+||+++++++..++++.. ....++++ +++.||.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~--~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~ 108 (349)
T 1jmx_B 31 DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN--HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYA 108 (349)
T ss_dssp TEEEEEEECSSCCSSCEEEECTTSSEEEEEET--TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEE
T ss_pred CcEEEEEecCCCCCCceeEECCCCCEEEEEeC--CCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEE
Confidence 4677788764422346999999975 887765 778999999999999888887642 12235555 4668998
Q ss_pred EEee-----------CCEEEEEeCCC---CcEEEEEecC-CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEee
Q 023864 165 VTWL-----------QKTGFIYDQNN---LNKLEEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVR 229 (276)
Q Consensus 165 lTwk-----------~~~v~V~D~~t---lk~i~~~~~~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~ 229 (276)
.... ++.+.+||.++ .+.+..++.+ ...+..+++||+ +|+.++ .|+++|+++++++..+.+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~ 185 (349)
T 1jmx_B 109 TVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLR 185 (349)
T ss_dssp EEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECST
T ss_pred EcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceecccccc
Confidence 8855 68999999998 4445566544 235556889999 888654 4999999999998887765
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-11 Score=111.11 Aligned_cols=174 Identities=9% Similarity=-0.004 Sum_probs=121.8
Q ss_pred eEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCc-EEEEee--------cCCCceEEEEEEe--CCE
Q 023864 93 IQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGK-VEAINQ--------MEGSYFGEGLTLL--GEK 161 (276)
Q Consensus 93 ~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgk-v~~~~~--------l~~~~FgEGit~~--g~~ 161 (276)
-+++..+....-....|++++++|+||.+.. +...|++||++... .+.... -+.-..+.|++++ +++
T Consensus 79 g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~--~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~ 156 (329)
T 3fvz_A 79 AEILQSSGKNLFYLPHGLSIDTDGNYWVTDV--ALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA 156 (329)
T ss_dssp CCEEEEECTTTCSSEEEEEECTTSCEEEEET--TTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC
T ss_pred CeEEeccCCCccCCceEEEECCCCCEEEEEC--CCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCe
Confidence 3455555544445678999999999998755 78899999986542 333331 1122357899998 689
Q ss_pred EEEEEe-eCCEEEEEeCCCCcEEEEEecC------------CCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEE
Q 023864 162 LFQVTW-LQKTGFIYDQNNLNKLEEFTHQ------------MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDI 227 (276)
Q Consensus 162 LyqlTw-k~~~v~V~D~~tlk~i~~~~~~------------~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~ 227 (276)
||+... .++++.+|| .+.+.+.++... .|.|..+++|+..||++| +.++|.++|+++++.++++.
T Consensus 157 lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~ 235 (329)
T 3fvz_A 157 VFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK 235 (329)
T ss_dssp EEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred EEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe
Confidence 999995 799999999 566777776421 145555667888999999 78999999999999998886
Q ss_pred eeeCCEeeeee----eeeEEECCEEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 228 VRYKGREVRNL----NELEFIKGEVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 228 V~~~g~pv~~l----NELE~idG~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
....+.....+ .-+-..+|.+|+..+.. +.|.++|+.+|+.+
T Consensus 236 ~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~-~~v~~~~~~~g~~~ 281 (329)
T 3fvz_A 236 HASFGRNVFAISYIPGFLFAVNGKPYFGDQEP-VQGFVMNFSSGEII 281 (329)
T ss_dssp CTTTTTCEEEEEEETTEEEEEECCCCTTCSCC-CCEEEEETTTCCEE
T ss_pred ccccCCCcceeeecCCEEEEeCCCEEeccCCC-cEEEEEEcCCCeEE
Confidence 54333211111 12223356666666667 79999999997654
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.39 E-value=2e-11 Score=105.64 Aligned_cols=139 Identities=12% Similarity=0.028 Sum_probs=112.0
Q ss_pred EEEEcCCCCCCeEEEEeCCCCcEEEEeecCC---CceEEEEEE--eCCEEEEEEeeCCEEEEEeCCCCcEEEEEecC---
Q 023864 118 LFESTGLYGRSSVRRVALETGKVEAINQMEG---SYFGEGLTL--LGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ--- 189 (276)
Q Consensus 118 LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~---~~FgEGit~--~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~--- 189 (276)
++.+++ +...|..||+++++++..+.++. .+. ++++ +++.+|+....++.+.++|..+.+.+.+++.+
T Consensus 3 ~~v~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~~--~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 78 (337)
T 1pby_B 3 YILAPA--RPDKLVVIDTEKMAVDKVITIADAGPTPM--VPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEE--TTTEEEEEETTTTEEEEEEECTTCTTCCC--CEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT
T ss_pred EEEEcC--CCCeEEEEECCCCcEEEEEEcCCCCCCcc--ceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc
Confidence 445455 67899999999999999998887 444 5555 45689999999999999999999999988753
Q ss_pred ----CCCeeEEeeCCCEEEEEC------------CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CC-EEEEE
Q 023864 190 ----MKDGWGLATDGKVLFGSD------------GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVWAN 251 (276)
Q Consensus 190 ----~~EGWGLT~Dg~~L~vSD------------GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG-~lyAN 251 (276)
.+.+..+++||+.||+++ +.+.|+++|++++++++.+.++. .++.+.+. || +||+.
T Consensus 79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~~~ 152 (337)
T 1pby_B 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR------QITMLAWARDGSKLYGL 152 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS------SCCCEEECTTSSCEEEE
T ss_pred cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCC------CcceeEECCCCCEEEEe
Confidence 356778899999999986 46899999999999998887753 34556665 55 48887
Q ss_pred eCCCCCeEEEEeCCCCcEE
Q 023864 252 VWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 252 vw~s~d~I~vIDp~T~~v~ 270 (276)
+ +.|.++|+++++..
T Consensus 153 ---~-~~i~~~d~~~~~~~ 167 (337)
T 1pby_B 153 ---G-RDLHVMDPEAGTLV 167 (337)
T ss_dssp ---S-SSEEEEETTTTEEE
T ss_pred ---C-CeEEEEECCCCcEe
Confidence 6 88999999997654
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.37 E-value=5.7e-12 Score=126.70 Aligned_cols=164 Identities=13% Similarity=0.116 Sum_probs=129.7
Q ss_pred eeEEEE--EEecCCCCCceEEEE-e-cC-CEEEEEcC---------------CCCCCeEEEEeCCCCcEEEEeecCCCce
Q 023864 92 TIQVVN--EFPHDPRAFTQGLLY-A-EN-DTLFESTG---------------LYGRSSVRRVALETGKVEAINQMEGSYF 151 (276)
Q Consensus 92 t~~Vv~--~~Phd~~aFTQGL~~-~-~d-g~LyeStG---------------~yg~S~I~~iDl~tgkv~~~~~l~~~~F 151 (276)
+.++++ ++|.. .-..|+.+ . || +.+|+++- ....+.+.++|.+|+++..+++++.++
T Consensus 121 t~~~~~ii~ip~g--~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~p- 197 (595)
T 1fwx_A 121 VMKCDAILEIPNA--KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNL- 197 (595)
T ss_dssp TTEEEEEEECSSC--CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCC-
T ss_pred CceEeeEEeCCCC--CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCc-
Confidence 445555 66653 33569998 4 66 46887631 124678999999999999999998775
Q ss_pred EEEEEE--eCCEEEEEEeeC-------------------------------------CEEEEEeCCC--CcE-EEEEecC
Q 023864 152 GEGLTL--LGEKLFQVTWLQ-------------------------------------KTGFIYDQNN--LNK-LEEFTHQ 189 (276)
Q Consensus 152 gEGit~--~g~~LyqlTwk~-------------------------------------~~v~V~D~~t--lk~-i~~~~~~ 189 (276)
+|+++ +|+++|+.+..+ +.+.|+|.++ .++ +++++.+
T Consensus 198 -d~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg 276 (595)
T 1fwx_A 198 -DNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA 276 (595)
T ss_dssp -CCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEE
T ss_pred -cceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecC
Confidence 55555 688999998765 3489999998 556 7899876
Q ss_pred -CCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCc------------EEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCC
Q 023864 190 -MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLK------------VIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQ 254 (276)
Q Consensus 190 -~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~------------vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~ 254 (276)
.++|..++|||+++|++| ++++|+++|.++++ ++.++.|+. .|. -+++. ||++|+.+|.
T Consensus 277 ~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~--gP~----h~aF~~dG~aY~t~~l 350 (595)
T 1fwx_A 277 NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL--GPL----HTAFDGRGNAYTSLFL 350 (595)
T ss_dssp SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCS--CEE----EEEECTTSEEEEEETT
T ss_pred CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCC--Ccc----eEEECCCCeEEEEEec
Confidence 689999999999999999 79999999999874 778888876 333 34565 6899999999
Q ss_pred CCCeEEEEeCCC
Q 023864 255 VWPCIPYAYLQA 266 (276)
Q Consensus 255 s~d~I~vIDp~T 266 (276)
+ +.|+++|.++
T Consensus 351 d-sqV~kwdi~~ 361 (595)
T 1fwx_A 351 D-SQVVKWNIED 361 (595)
T ss_dssp T-TEEEEEEHHH
T ss_pred C-CcEEEEEhhH
Confidence 9 9999999887
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.9e-11 Score=105.76 Aligned_cols=135 Identities=18% Similarity=0.227 Sum_probs=105.4
Q ss_pred eeEEEEEEecCCCC-CceEEEEecCC-EEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC------CceEEEEEEeCCEEE
Q 023864 92 TIQVVNEFPHDPRA-FTQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEG------SYFGEGLTLLGEKLF 163 (276)
Q Consensus 92 t~~Vv~~~Phd~~a-FTQGL~~~~dg-~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~------~~FgEGit~~g~~Ly 163 (276)
+.+++.+++++... ...++.|++|| .||.+.. +...|.+||+++++++..+.++. .+.+..+..++++||
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 97 (337)
T 1pby_B 20 KMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN--KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLA 97 (337)
T ss_dssp TTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET--TTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEE
T ss_pred CCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeC--CCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEE
Confidence 34678888875422 25699999998 6888765 67899999999999988888765 444333333467899
Q ss_pred EEE--------e---eCCEEEEEeCCCCcEEEEEecC-CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeee
Q 023864 164 QVT--------W---LQKTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY 230 (276)
Q Consensus 164 qlT--------w---k~~~v~V~D~~tlk~i~~~~~~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~ 230 (276)
+.. | .++.+.+||.++.+.+..++.+ .+.+..+++||++||+++ +.|+++|++++++++.+....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~--~~i~~~d~~~~~~~~~~~~~~ 174 (337)
T 1pby_B 98 IYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG--RDLHVMDPEAGTLVEDKPIQS 174 (337)
T ss_dssp EEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES--SSEEEEETTTTEEEEEECSTT
T ss_pred EEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEeC--CeEEEEECCCCcEeeeeeccc
Confidence 985 2 4699999999999999988764 356777899999999994 689999999999988887654
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.6e-11 Score=106.06 Aligned_cols=162 Identities=9% Similarity=-0.009 Sum_probs=117.9
Q ss_pred EEEEecCCCCCceEEEEecCCE-EEEEcCCCCCC--eEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeCC
Q 023864 96 VNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRS--SVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQK 170 (276)
Q Consensus 96 v~~~Phd~~aFTQGL~~~~dg~-LyeStG~yg~S--~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~~ 170 (276)
+..+++...+. .++.|++||+ || .+.. +.. .|.+||+++++++...+.+..+ .++++. ++.||+....++
T Consensus 76 ~~~~~~~~~~~-~~~~~s~dg~~l~-~~~~-~~~~~~i~v~d~~~~~~~~~~~~~~~~--~~~~~spdg~~l~~~~~~~~ 150 (331)
T 3u4y_A 76 VVAIQEGQSSM-ADVDITPDDQFAV-TVTG-LNHPFNMQSYSFLKNKFISTIPIPYDA--VGIAISPNGNGLILIDRSSA 150 (331)
T ss_dssp EEEEEECSSCC-CCEEECTTSSEEE-ECCC-SSSSCEEEEEETTTTEEEEEEECCTTE--EEEEECTTSSCEEEEEETTT
T ss_pred EEecccCCCCc-cceEECCCCCEEE-EecC-CCCcccEEEEECCCCCeEEEEECCCCc--cceEECCCCCEEEEEecCCC
Confidence 44555433333 4599999976 66 3331 223 9999999999999988887775 466665 457999999988
Q ss_pred E-EEEEeCCCCcEE-----EEEecC-CCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcE---EEEEEeeeCCEeeeeee
Q 023864 171 T-GFIYDQNNLNKL-----EEFTHQ-MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKV---IRKDIVRYKGREVRNLN 239 (276)
Q Consensus 171 ~-v~V~D~~tlk~i-----~~~~~~-~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~v---i~~I~V~~~g~pv~~lN 239 (276)
. +.+||.+.-..+ ..++.. .+.+..+++||++||+++ +++.|+++|++++++ +.++..+. .++
T Consensus 151 ~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~------~~~ 224 (331)
T 3u4y_A 151 NTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNN------LPG 224 (331)
T ss_dssp TEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSS------CCC
T ss_pred ceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCC------CCc
Confidence 8 999887653322 222222 346667889999999988 689999999999998 77666542 344
Q ss_pred eeEEE-CC-EEEEEeCCCCCeEEEEeCCCCcE
Q 023864 240 ELEFI-KG-EVWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 240 ELE~i-dG-~lyANvw~s~d~I~vIDp~T~~v 269 (276)
.+.+. || +||+..... +.|.++|+++++.
T Consensus 225 ~~~~spdg~~l~v~~~~~-~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 225 TIVVSRDGSTVYVLTEST-VDVFNFNQLSGTL 255 (331)
T ss_dssp CEEECTTSSEEEEECSSE-EEEEEEETTTTEE
T ss_pred eEEECCCCCEEEEEEcCC-CEEEEEECCCCce
Confidence 56665 55 599998888 9999999999775
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.35 E-value=1.6e-10 Score=102.37 Aligned_cols=162 Identities=10% Similarity=0.084 Sum_probs=112.4
Q ss_pred CCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecC---CCceEEEEEEe-CCEEEEEEeeC-----------
Q 023864 105 AFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME---GSYFGEGLTLL-GEKLFQVTWLQ----------- 169 (276)
Q Consensus 105 aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~---~~~FgEGit~~-g~~LyqlTwk~----------- 169 (276)
....++.+++||+||.+++ +.|.++|++++++......+ ......+++++ ++++|+.++..
T Consensus 54 ~~~~~i~~~~dG~l~v~~~----~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~ 129 (297)
T 3g4e_A 54 APVSSVALRQSGGYVATIG----TKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQ 129 (297)
T ss_dssp SCEEEEEEBTTSSEEEEET----TEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTC
T ss_pred CceEEEEECCCCCEEEEEC----CeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCC
Confidence 4567999999999998763 68999999999875544433 22345677776 47899999753
Q ss_pred CEEEEEeCCCCcEEEEEe-cCCCCeeEEeeCCCEEEEEC-CCceEEEEcC--CCCcEEEE-EEeeeCCEeeeeeeeeEEE
Q 023864 170 KTGFIYDQNNLNKLEEFT-HQMKDGWGLATDGKVLFGSD-GSSMLYQIDP--QTLKVIRK-DIVRYKGREVRNLNELEFI 244 (276)
Q Consensus 170 ~~v~V~D~~tlk~i~~~~-~~~~EGWGLT~Dg~~L~vSD-GS~~L~viDp--~t~~vi~~-I~V~~~g~pv~~lNELE~i 244 (276)
+.++.+|++. +...... ...+.|..+++||+.||++| +.++|+.+|. +++++... +-..... .-..+..|.+.
T Consensus 130 ~~l~~~d~~g-~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~-~~~~p~g~~~d 207 (297)
T 3g4e_A 130 GALYSLFPDH-HVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEK-EEQIPDGMCID 207 (297)
T ss_dssp EEEEEECTTS-CEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCG-GGCEEEEEEEB
T ss_pred cEEEEEECCC-CEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCC-CCCCCCeeEEC
Confidence 4788898763 3222111 22357888899999999999 5889999874 77776432 2221110 01234556665
Q ss_pred -CCEEEEEeCCCCCeEEEEeCCCCcEEEEEE
Q 023864 245 -KGEVWANVWQVWPCIPYAYLQAFGSSLVYV 274 (276)
Q Consensus 245 -dG~lyANvw~s~d~I~vIDp~T~~v~l~~~ 274 (276)
+|.||+..|.. +.|.++||+||+.. ..+
T Consensus 208 ~~G~lwva~~~~-~~v~~~d~~tG~~~-~~i 236 (297)
T 3g4e_A 208 AEGKLWVACYNG-GRVIRLDPVTGKRL-QTV 236 (297)
T ss_dssp TTSCEEEEEETT-TEEEEECTTTCCEE-EEE
T ss_pred CCCCEEEEEcCC-CEEEEEcCCCceEE-EEE
Confidence 78999999999 99999999997644 443
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=99.31 E-value=8.2e-11 Score=105.11 Aligned_cols=157 Identities=16% Similarity=0.173 Sum_probs=113.5
Q ss_pred CceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe-CCEEEEEEeeCCEEEEEeCCCCc--E
Q 023864 106 FTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNLN--K 182 (276)
Q Consensus 106 FTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~-g~~LyqlTwk~~~v~V~D~~tlk--~ 182 (276)
...|+.+++||+||++........|.++|.++|++.....++...|..|++.. ++.+|+....++.++++|+.+.+ +
T Consensus 73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v 152 (306)
T 2p4o_A 73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSI 152 (306)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeE
Confidence 46799999999999876421233588999999998766667777788999865 46899999889999999998642 2
Q ss_pred EEEEe-------c-CCCCeeEEeeCCCEEEEEC-CCceEEEEcCCC-CcEE-EEEEeeeCCEeeeeeeeeEEE-CCEEEE
Q 023864 183 LEEFT-------H-QMKDGWGLATDGKVLFGSD-GSSMLYQIDPQT-LKVI-RKDIVRYKGREVRNLNELEFI-KGEVWA 250 (276)
Q Consensus 183 i~~~~-------~-~~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t-~~vi-~~I~V~~~g~pv~~lNELE~i-dG~lyA 250 (276)
..... . +....-|+++||++||++| +.++|+++|++. .++. .++. .. ...+..|.+. +|.||+
T Consensus 153 ~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~-~~----~~~P~gi~vd~dG~l~v 227 (306)
T 2p4o_A 153 WLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIF-VE----QTNIDDFAFDVEGNLYG 227 (306)
T ss_dssp EEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEE-EE----SCCCSSEEEBTTCCEEE
T ss_pred EEECCccccccccCCCCcCCCcCcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEE-ec----cCCCCCeEECCCCCEEE
Confidence 11000 0 1224566799999999999 789999999875 3321 1111 11 1245566666 789999
Q ss_pred EeCCCCCeEEEEeCCCCcE
Q 023864 251 NVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 251 Nvw~s~d~I~vIDp~T~~v 269 (276)
..|.. ++|.+|||+ |+.
T Consensus 228 a~~~~-~~V~~~~~~-G~~ 244 (306)
T 2p4o_A 228 ATHIY-NSVVRIAPD-RST 244 (306)
T ss_dssp ECBTT-CCEEEECTT-CCE
T ss_pred EeCCC-CeEEEECCC-CCE
Confidence 99999 999999997 554
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.2e-10 Score=101.98 Aligned_cols=166 Identities=14% Similarity=0.052 Sum_probs=125.0
Q ss_pred EEEEEEecCCCCCceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEe---
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTW--- 167 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTw--- 167 (276)
+.+.+++. ......++.|++++. ||.+++ .+..|++||+++++.+...+.+.. ..++++. ++.||...+
T Consensus 202 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~g~~l~~~~~~~~ 276 (433)
T 3bws_A 202 AYKATVDL-TGKWSKILLYDPIRDLVYCSNW--ISEDISVIDRKTKLEIRKTDKIGL--PRGLLLSKDGKELYIAQFSAS 276 (433)
T ss_dssp CEEEEEEC-SSSSEEEEEEETTTTEEEEEET--TTTEEEEEETTTTEEEEECCCCSE--EEEEEECTTSSEEEEEEEESC
T ss_pred eEEEEEcC-CCCCeeEEEEcCCCCEEEEEec--CCCcEEEEECCCCcEEEEecCCCC--ceEEEEcCCCCEEEEEECCCC
Confidence 45666653 356678999999874 766544 567999999999998887766554 4566664 568999888
Q ss_pred ----eCCEEEEEeCCCCcEEEEEecC-CCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeee
Q 023864 168 ----LQKTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNEL 241 (276)
Q Consensus 168 ----k~~~v~V~D~~tlk~i~~~~~~-~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNEL 241 (276)
.++.+.+||..+.+.+..+..+ .+.+..+++||+.||++. +..+|.++|+++.+++..+.... .++.+
T Consensus 277 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~------~~~~~ 350 (433)
T 3bws_A 277 NQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFD------KPNTI 350 (433)
T ss_dssp TTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSS------SEEEE
T ss_pred ccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCC------CCCeE
Confidence 4678999999999998887544 235556788999999985 68899999999999988876542 34566
Q ss_pred EEE-CC-EEEEEeCCC-------------CCeEEEEeCCCCcEE
Q 023864 242 EFI-KG-EVWANVWQV-------------WPCIPYAYLQAFGSS 270 (276)
Q Consensus 242 E~i-dG-~lyANvw~s-------------~d~I~vIDp~T~~v~ 270 (276)
.+. || .||+..... +..|.++|+++++.+
T Consensus 351 ~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~ 394 (433)
T 3bws_A 351 ALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVK 394 (433)
T ss_dssp EECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEE
T ss_pred EEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEE
Confidence 676 44 688887654 128999999996543
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.29 E-value=1e-10 Score=106.15 Aligned_cols=160 Identities=10% Similarity=-0.015 Sum_probs=116.4
Q ss_pred CCCceEEEEecCCEEEEEcCC---CCCCeEEEEeCCCCcEEEEeecCCC-----ceEEEEEEe--CCEEEEEEe---eCC
Q 023864 104 RAFTQGLLYAENDTLFESTGL---YGRSSVRRVALETGKVEAINQMEGS-----YFGEGLTLL--GEKLFQVTW---LQK 170 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~---yg~S~I~~iDl~tgkv~~~~~l~~~-----~FgEGit~~--g~~LyqlTw---k~~ 170 (276)
-...+|+.++++|+||+..-. .+...|.+||+++|++++.+.++.. .|..+++++ ++.+|+... .++
T Consensus 66 ~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~ 145 (343)
T 2qe8_A 66 FDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKA 145 (343)
T ss_dssp CSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGC
T ss_pred eeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCC
Confidence 356789999999999986431 1257899999999999888887632 355788998 579999998 899
Q ss_pred EEEEEeCCCCcEEEEEec-------------------------------CCCCeeEEeeCCCEEEEEC-CCceEEEEcCC
Q 023864 171 TGFIYDQNNLNKLEEFTH-------------------------------QMKDGWGLATDGKVLFGSD-GSSMLYQIDPQ 218 (276)
Q Consensus 171 ~v~V~D~~tlk~i~~~~~-------------------------------~~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~ 218 (276)
.+.+||+++.+....+.. ..+.|.++++||+.||++| .+.+|+.+|..
T Consensus 146 ~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~ 225 (343)
T 2qe8_A 146 ALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSA 225 (343)
T ss_dssp EEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHH
T ss_pred eEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHH
Confidence 999999988776554411 0135677889999999998 56799999853
Q ss_pred CCc--------EEEEEE-eeeCCEeeeeeeeeEEE-CCEEEEEeCCCCCeEEEEeCCCCc
Q 023864 219 TLK--------VIRKDI-VRYKGREVRNLNELEFI-KGEVWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 219 t~~--------vi~~I~-V~~~g~pv~~lNELE~i-dG~lyANvw~s~d~I~vIDp~T~~ 268 (276)
.++ +...+. .+..+ .++-|.+. +|.||++.|.. +.|.++|+++|+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~g~~g----~pdgia~d~~G~l~va~~~~-~~V~~~d~~~G~ 280 (343)
T 2qe8_A 226 DLSNLQLTDAELGSKIERYSEKP----ICDGISIDKDHNIYVGDLAH-SAIGVITSADRA 280 (343)
T ss_dssp HHTCTTCCHHHHHTTCEEEEECC----SCSCEEECTTCCEEEEEGGG-TEEEEEETTTTE
T ss_pred HhcCCCCChhhhhcceEecccCC----CCceEEECCCCCEEEEccCC-CeEEEEECCCCC
Confidence 211 001111 12212 44556665 68999999999 999999997765
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.28 E-value=3.3e-11 Score=110.97 Aligned_cols=111 Identities=14% Similarity=0.188 Sum_probs=91.0
Q ss_pred CEEEEEcCCC---CCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEe---------eCCEEEEEeCCCCc
Q 023864 116 DTLFESTGLY---GRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTW---------LQKTGFIYDQNNLN 181 (276)
Q Consensus 116 g~LyeStG~y---g~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTw---------k~~~v~V~D~~tlk 181 (276)
.++|++.... .++.|.+||.++++++.+++.+..+ ++++. +++||+.++ .++.+.+||.++++
T Consensus 16 ~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p---~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~ 92 (361)
T 2oiz_A 16 NRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG---HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT 92 (361)
T ss_dssp GEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE---EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC
T ss_pred CEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC---ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc
Confidence 4688766532 3568999999999999888776554 66665 679999997 46789999999999
Q ss_pred EEEEEecC--------CCCeeEEeeCCCEEEEEC-C-CceEEEEcCCCCcEEEE-EEee
Q 023864 182 KLEEFTHQ--------MKDGWGLATDGKVLFGSD-G-SSMLYQIDPQTLKVIRK-DIVR 229 (276)
Q Consensus 182 ~i~~~~~~--------~~EGWGLT~Dg~~L~vSD-G-S~~L~viDp~t~~vi~~-I~V~ 229 (276)
++++++.+ .+.+..+++||++||++| + ++.|.++|+++.+++++ |.+.
T Consensus 93 ~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~ 151 (361)
T 2oiz_A 93 FEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA 151 (361)
T ss_dssp EEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT
T ss_pred EEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC
Confidence 99999853 357788999999999998 4 78999999999999988 6653
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.27 E-value=5.3e-11 Score=119.74 Aligned_cols=145 Identities=14% Similarity=0.088 Sum_probs=118.1
Q ss_pred CC-EEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEE----eCCEEEEEE-----------------eeCCEE
Q 023864 115 ND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL----LGEKLFQVT-----------------WLQKTG 172 (276)
Q Consensus 115 dg-~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~----~g~~LyqlT-----------------wk~~~v 172 (276)
|| .||+... ..++|.++|+++.++.+.+.+|...-.+|+++ .++.+|+.+ |..+.+
T Consensus 100 DG~~lfVnd~--~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 100 DGRFLFMNDK--ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEET--TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CCCEEEEEcC--CCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 44 5998755 88999999999999988677765445778885 468999985 888899
Q ss_pred EEEeCCCCcEEEEEecC-CCCeeEEeeCCCEEEEEC-CC-------------------------------------ceEE
Q 023864 173 FIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSD-GS-------------------------------------SMLY 213 (276)
Q Consensus 173 ~V~D~~tlk~i~~~~~~-~~EGWGLT~Dg~~L~vSD-GS-------------------------------------~~L~ 213 (276)
.++|.+|++++.+++.+ .++|..+++||+++|+++ .+ +.|.
T Consensus 178 tvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 99999999999999984 789999999999999988 34 2489
Q ss_pred EEcCCC--CcE-EEEEEeeeCCEeeeeeeeeEEE-CC-EEEEEeCCCCCeEEEEeCCCCc
Q 023864 214 QIDPQT--LKV-IRKDIVRYKGREVRNLNELEFI-KG-EVWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 214 viDp~t--~~v-i~~I~V~~~g~pv~~lNELE~i-dG-~lyANvw~s~d~I~vIDp~T~~ 268 (276)
+||+++ .++ +++|.|+... .-+.+. || ++||+...+ |.|.+||.++.+
T Consensus 258 VID~~~~~~~~~~~~Ipvg~~P------hGv~~sPDGk~v~V~~~~s-~~VsVid~~~~~ 310 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPIANNP------HGCNMAPDKKHLCVAGKLS-PTVTVLDVTRFD 310 (595)
T ss_dssp EEECSGGGCCSSEEEEEEESSC------CCEEECTTSSEEEEECTTS-SBEEEEEGGGHH
T ss_pred EEeCcccCCceeEEEEecCCCc------eEEEEcCCCCEEEEeCCCC-CeEEEEECcccc
Confidence 999998 667 8899998522 222233 55 699999999 999999999753
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.27 E-value=5.3e-10 Score=99.12 Aligned_cols=170 Identities=15% Similarity=0.082 Sum_probs=116.2
Q ss_pred eEEEEEEecCC--------CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCC-CCcEEEE--eecCCCceEEEEEEe--C
Q 023864 93 IQVVNEFPHDP--------RAFTQGLLYAENDTLFESTGLYGRSSVRRVALE-TGKVEAI--NQMEGSYFGEGLTLL--G 159 (276)
Q Consensus 93 ~~Vv~~~Phd~--------~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~-tgkv~~~--~~l~~~~FgEGit~~--g 159 (276)
.+.+..+++.. .....++.|+|||+||.+.. +.+.|++||++ +|++... ..++......++++. +
T Consensus 121 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~--~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg 198 (347)
T 3hfq_A 121 LTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDL--GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDG 198 (347)
T ss_dssp EEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEET--TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTS
T ss_pred eeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeC--CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCC
Confidence 34566666532 23466899999999887644 78899999998 6765433 234433334566765 4
Q ss_pred CEEEEEEeeCCEEEEEeCCC--Cc--EEEEEecC--------CCCeeEEeeCCCEEEEEC-CCceEEEEcCC---CCcEE
Q 023864 160 EKLFQVTWLQKTGFIYDQNN--LN--KLEEFTHQ--------MKDGWGLATDGKVLFGSD-GSSMLYQIDPQ---TLKVI 223 (276)
Q Consensus 160 ~~LyqlTwk~~~v~V~D~~t--lk--~i~~~~~~--------~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~---t~~vi 223 (276)
+.||+....++.+.+||.+. .+ .+..+... .+.+..+++||++||+++ +.+.|.++|.+ +++.+
T Consensus 199 ~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~ 278 (347)
T 3hfq_A 199 QYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLI 278 (347)
T ss_dssp SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEE
T ss_pred CEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEe
Confidence 57999999999999988653 33 34455432 022366889999999988 68999999976 44555
Q ss_pred EEEEeeeCCEeeeeeeeeEEE-CC-EEEEEeCCCCCeEEEE--eCCCCcEE
Q 023864 224 RKDIVRYKGREVRNLNELEFI-KG-EVWANVWQVWPCIPYA--YLQAFGSS 270 (276)
Q Consensus 224 ~~I~V~~~g~pv~~lNELE~i-dG-~lyANvw~s~d~I~vI--Dp~T~~v~ 270 (276)
..+.+. +. .+..+.+. || +||+....+ +.|.++ |++||+..
T Consensus 279 ~~~~~~--~~---~~~~~~~spdg~~l~v~~~~~-~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 279 QQISTE--GD---FPRDFDLDPTEAFVVVVNQNT-DNATLYARDLTSGKLS 323 (347)
T ss_dssp EEEECS--SS---CCCEEEECTTSSEEEEEETTT-TEEEEEEECTTTCCEE
T ss_pred EEEecC--CC---CcCeEEECCCCCEEEEEEcCC-CcEEEEEEeCCCCeEE
Confidence 555542 11 24455665 55 699999888 887777 99998754
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.26 E-value=2e-10 Score=97.82 Aligned_cols=154 Identities=10% Similarity=0.116 Sum_probs=111.8
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe-CCEEEEEEeeCCEEEEEeCCCCcE
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNLNK 182 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~-g~~LyqlTwk~~~v~V~D~~tlk~ 182 (276)
.....|++++++|+||.++. ...|.+||++++.. .....+......|++++ +++||+.+..++.++++|..+.+.
T Consensus 66 ~~~p~~i~~~~~g~l~v~~~---~~~i~~~d~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~ 141 (270)
T 1rwi_B 66 LYQPQGLAVDGAGTVYVTDF---NNRVVTLAAGSNNQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ 141 (270)
T ss_dssp CCSCCCEEECTTCCEEEEET---TTEEEEECTTCSCC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC
T ss_pred cCCcceeEECCCCCEEEEcC---CCEEEEEeCCCceE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee
Confidence 34567999999999998764 56899999987654 33333333457789987 578999999999999999877665
Q ss_pred EEEEec--CCCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCCCCCe
Q 023864 183 LEEFTH--QMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQVWPC 258 (276)
Q Consensus 183 i~~~~~--~~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~s~d~ 258 (276)
...... ..+.|..+.+||+ ||++| +.+.|+++|+++.+..... ..+ ...++.|.+. +|.||+..+.. +.
T Consensus 142 ~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~---~~~--~~~p~~i~~d~~g~l~v~~~~~-~~ 214 (270)
T 1rwi_B 142 TVLPFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQVVLP---FTD--ITAPWGIAVDEAGTVYVTEHNT-NQ 214 (270)
T ss_dssp EECCCCSCCSCCCEEECTTCC-EEEEEGGGTEEEEECTTTCCEEECC---CSS--CCSEEEEEECTTCCEEEEETTT-SC
T ss_pred EeeccccCCCceeEEEeCCCC-EEEEECCCCEEEEEecCCCceEeec---ccC--CCCceEEEECCCCCEEEEECCC-Cc
Confidence 432211 1345666677776 99988 5789999999987654321 111 1355666665 57999999999 99
Q ss_pred EEEEeCCCCc
Q 023864 259 IPYAYLQAFG 268 (276)
Q Consensus 259 I~vIDp~T~~ 268 (276)
|.++|+++..
T Consensus 215 v~~~~~~~~~ 224 (270)
T 1rwi_B 215 VVKLLAGSTT 224 (270)
T ss_dssp EEEECTTCSC
T ss_pred EEEEcCCCCc
Confidence 9999998754
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.25 E-value=7.2e-10 Score=102.35 Aligned_cols=155 Identities=10% Similarity=0.094 Sum_probs=113.3
Q ss_pred CCceEEEEec-CCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeC-CEEEEEeCCCC
Q 023864 105 AFTQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQ-KTGFIYDQNNL 180 (276)
Q Consensus 105 aFTQGL~~~~-dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~-~~v~V~D~~tl 180 (276)
....||+++. ++.||.+.. +...|.++|++........ -..-..+.||+++ ++.||...|.+ +++.++|.+.-
T Consensus 116 ~~p~glavd~~~g~ly~~d~--~~~~I~~~~~dG~~~~~l~-~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~ 192 (349)
T 3v64_C 116 ESPGGLAVDWVHDKLYWTDS--GTSRIEVANLDGAHRKVLL-WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS 192 (349)
T ss_dssp SCCCEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEE-CTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCccEEEEecCCCeEEEEcC--CCCeEEEEcCCCCceEEEE-eCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC
Confidence 3457999996 578998865 7789999999865322211 1223456789998 68999999999 99999998753
Q ss_pred cEEEEEe--cCCCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCCCC
Q 023864 181 NKLEEFT--HQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQVWP 257 (276)
Q Consensus 181 k~i~~~~--~~~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s~d 257 (276)
....-+. ...|.|.+++++++.||++| +.++|+.+|++... .+.+.... ..+++-|.+.+|.||+..|.. +
T Consensus 193 ~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~-~~~~~~~~----~~~P~giav~~~~ly~td~~~-~ 266 (349)
T 3v64_C 193 GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH-RKAVISQG----LPHPFAITVFEDSLYWTDWHT-K 266 (349)
T ss_dssp SCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSS----CSSEEEEEEETTEEEEEETTT-T
T ss_pred CcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCc-eEEEEeCC----CCCceEEEEECCEEEEecCCC-C
Confidence 3221112 22357777888899999999 78999999987532 22222111 346677888899999999999 9
Q ss_pred eEEEEeCCCCc
Q 023864 258 CIPYAYLQAFG 268 (276)
Q Consensus 258 ~I~vIDp~T~~ 268 (276)
.|.++|+.+|+
T Consensus 267 ~V~~~~~~~G~ 277 (349)
T 3v64_C 267 SINSANKFTGK 277 (349)
T ss_dssp EEEEEETTTCC
T ss_pred eEEEEEccCCC
Confidence 99999988866
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.5e-09 Score=98.45 Aligned_cols=157 Identities=11% Similarity=0.025 Sum_probs=113.0
Q ss_pred CCceEEEEec-CCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeC-CEEEEEeCCCC
Q 023864 105 AFTQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQ-KTGFIYDQNNL 180 (276)
Q Consensus 105 aFTQGL~~~~-dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~-~~v~V~D~~tl 180 (276)
....||+++. ++.||.+.. +...|.++|++......... .....+.|++++ +++||...|.+ +++.++|++.-
T Consensus 77 ~~p~glavd~~~~~ly~~d~--~~~~I~~~~~~g~~~~~~~~-~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~ 153 (316)
T 1ijq_A 77 QAPDGLAVDWIHSNIYWTDS--VLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 153 (316)
T ss_dssp SCCCEEEEETTTTEEEEEET--TTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCcCEEEEeecCCeEEEEEC--CCCEEEEEeCCCCceEEEEE-CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC
Confidence 3457999985 578998755 78899999998654332222 122356799997 68999999986 89999998643
Q ss_pred cEEEEE---ecCCCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCCC
Q 023864 181 NKLEEF---THQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQVW 256 (276)
Q Consensus 181 k~i~~~---~~~~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s~ 256 (276)
. ...+ ....|.|.++.+++++||++| +.++|+.+|.+... .+.+.-. +....++.-|...+|+||+..|..
T Consensus 154 ~-~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~--~~~~~~P~giav~~~~ly~~d~~~- 228 (316)
T 1ijq_A 154 D-IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILED--EKRLAHPFSLAVFEDKVFWTDIIN- 228 (316)
T ss_dssp C-EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEEC--TTTTSSEEEEEEETTEEEEEETTT-
T ss_pred C-eEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeec--CCccCCcEEEEEECCEEEEEECCC-
Confidence 2 2222 222457777888899999999 68899999987532 2222211 112235566778899999999999
Q ss_pred CeEEEEeCCCCcE
Q 023864 257 PCIPYAYLQAFGS 269 (276)
Q Consensus 257 d~I~vIDp~T~~v 269 (276)
+.|.++|+.+|+.
T Consensus 229 ~~V~~~~~~~g~~ 241 (316)
T 1ijq_A 229 EAIFSANRLTGSD 241 (316)
T ss_dssp TEEEEEETTTCCC
T ss_pred CeEEEEeCCCCcc
Confidence 9999999998763
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=99.24 E-value=3e-09 Score=94.89 Aligned_cols=171 Identities=12% Similarity=0.079 Sum_probs=119.6
Q ss_pred CceeeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe-CCEEEEEE
Q 023864 88 PSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVT 166 (276)
Q Consensus 88 ~~~~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~-g~~LyqlT 166 (276)
+...+.+++.++|. ..+.+|++++++|+||.+.- ....|.++|+++ ++.....++.. +.|++++ +++||+++
T Consensus 17 ~~~~~~~~~~~~p~--~~~pegia~~~~g~lyv~d~--~~~~I~~~d~~g-~~~~~~~~~~~--p~gia~~~dG~l~vad 89 (306)
T 2p4o_A 17 IELAPAKIITSFPV--NTFLENLASAPDGTIFVTNH--EVGEIVSITPDG-NQQIHATVEGK--VSGLAFTSNGDLVATG 89 (306)
T ss_dssp BCCCCEEEEEEECT--TCCEEEEEECTTSCEEEEET--TTTEEEEECTTC-CEEEEEECSSE--EEEEEECTTSCEEEEE
T ss_pred CcCCCceEeEeCCC--CCCcceEEECCCCCEEEEeC--CCCeEEEECCCC-ceEEEEeCCCC--ceeEEEcCCCcEEEEe
Confidence 33457899999997 47889999999999999854 678899999986 45555566654 6688886 46899999
Q ss_pred eeCC--EEEEEeCCCCcEEEEEecC-CCCeeEEe-eCCCEEEEEC-CCceEEEEcCCCCcEEEEEEee-----eCCEeee
Q 023864 167 WLQK--TGFIYDQNNLNKLEEFTHQ-MKDGWGLA-TDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVR-----YKGREVR 236 (276)
Q Consensus 167 wk~~--~v~V~D~~tlk~i~~~~~~-~~EGWGLT-~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~-----~~g~pv~ 236 (276)
+..+ .++.+|..+.+...-...+ ....-|++ .++..+|++| +..+|+++|+.+.+..-...-. ..-..+.
T Consensus 90 ~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~ 169 (306)
T 2p4o_A 90 WNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFP 169 (306)
T ss_dssp ECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSC
T ss_pred ccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCC
Confidence 8754 5889998887654333322 11122333 3566899999 6899999999875321110000 1011344
Q ss_pred eeeeeEEECCEEEEEeCCCCCeEEEEeCCC
Q 023864 237 NLNELEFIKGEVWANVWQVWPCIPYAYLQA 266 (276)
Q Consensus 237 ~lNELE~idG~lyANvw~s~d~I~vIDp~T 266 (276)
..|-|...+++||++.... ++|.++|++.
T Consensus 170 ~pngis~dg~~lyv~d~~~-~~I~~~~~~~ 198 (306)
T 2p4o_A 170 AANGLKRFGNFLYVSNTEK-MLLLRIPVDS 198 (306)
T ss_dssp SEEEEEEETTEEEEEETTT-TEEEEEEBCT
T ss_pred cCCCcCcCCCEEEEEeCCC-CEEEEEEeCC
Confidence 6777745556899999999 9999999875
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.24 E-value=9.6e-10 Score=102.84 Aligned_cols=155 Identities=10% Similarity=0.094 Sum_probs=113.4
Q ss_pred CCceEEEEec-CCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeC-CEEEEEeCCCC
Q 023864 105 AFTQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQ-KTGFIYDQNNL 180 (276)
Q Consensus 105 aFTQGL~~~~-dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~-~~v~V~D~~tl 180 (276)
....||++++ ++.||.+.. +...|.+++++......... ..-..+.||+++ ++.||...|.+ +++.++|++..
T Consensus 159 ~~p~glavd~~~g~lY~~d~--~~~~I~~~~~dg~~~~~l~~-~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~ 235 (386)
T 3v65_B 159 ESPGGLAVDWVHDKLYWTDS--GTSRIEVANLDGAHRKVLLW-QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS 235 (386)
T ss_dssp SCCCCEEEETTTTEEEEEET--TTTEEEECBTTSCSCEEEEC-SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCccEEEEEeCCCeEEEEcC--CCCeEEEEeCCCCceEEeec-CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC
Confidence 3457999996 478998755 77899999998654222221 222456788988 68999999999 99999998754
Q ss_pred cEEEEEec--CCCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCCCC
Q 023864 181 NKLEEFTH--QMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQVWP 257 (276)
Q Consensus 181 k~i~~~~~--~~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s~d 257 (276)
....-+.. ..|.|.++.++++.||++| +.++|+.+|.+... .+.+.... ..++.-|.+.+|.||+..|.. +
T Consensus 236 ~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~~~----~~~P~giav~~~~ly~td~~~-~ 309 (386)
T 3v65_B 236 GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH-RKAVISQG----LPHPFAITVFEDSLYWTDWHT-K 309 (386)
T ss_dssp SCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCS-CEEEECSS----CSSEEEEEEETTEEEEEETTT-T
T ss_pred CcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCe-eEEEEECC----CCCceEEEEECCEEEEeeCCC-C
Confidence 33222222 2357777888899999999 68999999987532 22232221 345667888899999999999 9
Q ss_pred eEEEEeCCCCc
Q 023864 258 CIPYAYLQAFG 268 (276)
Q Consensus 258 ~I~vIDp~T~~ 268 (276)
.|.++|+.+|+
T Consensus 310 ~V~~~~~~~G~ 320 (386)
T 3v65_B 310 SINSANKFTGK 320 (386)
T ss_dssp EEEEEETTTCC
T ss_pred eEEEEECCCCc
Confidence 99999987765
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-09 Score=92.92 Aligned_cols=152 Identities=12% Similarity=0.091 Sum_probs=109.0
Q ss_pred CCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecC-CCceEEEEEEe-CCEEEEEEeeCCEEEEEeCCCC
Q 023864 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNL 180 (276)
Q Consensus 103 ~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~-~~~FgEGit~~-g~~LyqlTwk~~~v~V~D~~tl 180 (276)
......+++++++|+||.++. +...|.++|+ ++++... .++ ......+++++ ++++|+.++.++.++++|+ +.
T Consensus 97 ~~~~~~~i~~~~~g~l~v~~~--~~~~i~~~d~-~g~~~~~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g 171 (299)
T 2z2n_A 97 PDSAPYGITEGPNGDIWFTEM--NGNRIGRITD-DGKIREY-ELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SG 171 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEET--TTTEEEEECT-TCCEEEE-ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TC
T ss_pred cCCCceeeEECCCCCEEEEec--CCceEEEECC-CCCEEEe-cCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CC
Confidence 345678999999999998765 5789999999 7776533 333 34567899998 4699999999999999999 66
Q ss_pred cEEEEEecC--CCCeeEE--eeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCC
Q 023864 181 NKLEEFTHQ--MKDGWGL--ATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQ 254 (276)
Q Consensus 181 k~i~~~~~~--~~EGWGL--T~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~ 254 (276)
+... +..+ .....++ .+||+ ||+++ +.+.|+++|+ +.++.. +.... ....+..|.+. +|.||+..+.
T Consensus 172 ~~~~-~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~-~~~~~---~~~~~~~i~~~~~g~l~v~~~~ 244 (299)
T 2z2n_A 172 DITE-FKIPTPASGPVGITKGNDDA-LWFVEIIGNKIGRITT-SGEITE-FKIPT---PNARPHAITAGAGIDLWFTEWG 244 (299)
T ss_dssp CEEE-EECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEE-EECSS---TTCCEEEEEECSTTCEEEEETT
T ss_pred cEEE-eeCCCCCCcceeEEECCCCC-EEEEccCCceEEEECC-CCcEEE-EECCC---CCCCceeEEECCCCCEEEeccC
Confidence 5543 4322 2233444 45555 88877 6889999999 777543 33321 12345566665 6899999998
Q ss_pred CCCeEEEEeCCCCc
Q 023864 255 VWPCIPYAYLQAFG 268 (276)
Q Consensus 255 s~d~I~vIDp~T~~ 268 (276)
. +.|.++|+ +++
T Consensus 245 ~-~~i~~~d~-~g~ 256 (299)
T 2z2n_A 245 A-NKIGRLTS-NNI 256 (299)
T ss_dssp T-TEEEEEET-TTE
T ss_pred C-ceEEEECC-CCc
Confidence 8 99999999 444
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.8e-09 Score=97.82 Aligned_cols=157 Identities=15% Similarity=0.129 Sum_probs=121.6
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeCCEEEEEeCCCCc
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLN 181 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~~~v~V~D~~tlk 181 (276)
.....++.+++++++|.+++ .+..|++||+++++.+...... .....++++. ++.+|+....++.+.+||..+.+
T Consensus 169 ~~~v~~~~~~~~~~~~~s~~--~d~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~ 245 (433)
T 3bws_A 169 LGFVETISIPEHNELWVSQM--QANAVHVFDLKTLAYKATVDLT-GKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL 245 (433)
T ss_dssp CCEEEEEEEGGGTEEEEEEG--GGTEEEEEETTTCCEEEEEECS-SSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred CCceeEEEEcCCCEEEEEEC--CCCEEEEEECCCceEEEEEcCC-CCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc
Confidence 44667899998899998877 7789999999999988877632 3345566775 56899999999999999999999
Q ss_pred EEEEEecC-CCCeeEEeeCCCEEEEEC--------CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CC-EEEE
Q 023864 182 KLEEFTHQ-MKDGWGLATDGKVLFGSD--------GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVWA 250 (276)
Q Consensus 182 ~i~~~~~~-~~EGWGLT~Dg~~L~vSD--------GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG-~lyA 250 (276)
.+.+++.. ...+..+++||+.|++++ +...|+++|+.+.+++..+.... .+..+.+. +| ++|+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~------~~~~~~~~~~g~~l~~ 319 (433)
T 3bws_A 246 EIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG------NKRHIVSGNTENKIYV 319 (433)
T ss_dssp EEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE------CEEEEEECSSTTEEEE
T ss_pred EEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC------CcceEEECCCCCEEEE
Confidence 98888754 123444678999999876 35689999999998887775443 33345554 45 7999
Q ss_pred EeCCCCCeEEEEeCCCCcEE
Q 023864 251 NVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 251 Nvw~s~d~I~vIDp~T~~v~ 270 (276)
..... +.|.++|+++++.+
T Consensus 320 ~~~~~-~~v~v~d~~~~~~~ 338 (433)
T 3bws_A 320 SDMCC-SKIEVYDLKEKKVQ 338 (433)
T ss_dssp EETTT-TEEEEEETTTTEEE
T ss_pred EecCC-CEEEEEECCCCcEE
Confidence 99888 99999999996543
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.4e-09 Score=94.39 Aligned_cols=154 Identities=14% Similarity=0.032 Sum_probs=111.1
Q ss_pred CceEEEEecC-CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeCCEEEEEeCCCCcE
Q 023864 106 FTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLNK 182 (276)
Q Consensus 106 FTQGL~~~~d-g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~~~v~V~D~~tlk~ 182 (276)
...|++++++ ++||.+.. +...|.++|++++++...... ....+.|++++ +++||+.++.++++.++|.+....
T Consensus 37 ~~~gi~~d~~~~~ly~~d~--~~~~I~~~~~~g~~~~~~~~~-~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~ 113 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDI--SEPSIGRASLHGGEPTTIIRQ-DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR 113 (267)
T ss_dssp EEEEEEEETTTTEEEEEET--TTTEEEEEESSSCCCEEEECT-TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred cEEEEEEecCCCEEEEEEC--CCCEEEEEecCCCCcEEEEEC-CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE
Confidence 3469999985 78998754 888999999987765333221 22467899997 589999999999999999875432
Q ss_pred EEEEec--CCCCeeEEeeCCCEEEEEC-C--CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE--CCEEEEEeCCC
Q 023864 183 LEEFTH--QMKDGWGLATDGKVLFGSD-G--SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGEVWANVWQV 255 (276)
Q Consensus 183 i~~~~~--~~~EGWGLT~Dg~~L~vSD-G--S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i--dG~lyANvw~s 255 (276)
..-++. ..|.|..+.++++.||++| + .++|+.+|++. +..+.+. .. .+..+|.|.+. +++||+..+..
T Consensus 114 ~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~-~~---~~~~P~gia~d~~~~~lyv~d~~~ 188 (267)
T 1npe_A 114 RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILA-QD---NLGLPNGLTFDAFSSQLCWVDAGT 188 (267)
T ss_dssp EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEE-CT---TCSCEEEEEEETTTTEEEEEETTT
T ss_pred EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEE-EC---CCCCCcEEEEcCCCCEEEEEECCC
Confidence 222222 2356666778899999999 4 47999988764 2222221 11 23467888887 46899999999
Q ss_pred CCeEEEEeCCCCc
Q 023864 256 WPCIPYAYLQAFG 268 (276)
Q Consensus 256 ~d~I~vIDp~T~~ 268 (276)
+.|.++|+++..
T Consensus 189 -~~I~~~~~~g~~ 200 (267)
T 1npe_A 189 -HRAECLNPAQPG 200 (267)
T ss_dssp -TEEEEEETTEEE
T ss_pred -CEEEEEecCCCc
Confidence 999999998643
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.21 E-value=9.4e-10 Score=103.67 Aligned_cols=158 Identities=12% Similarity=0.125 Sum_probs=114.9
Q ss_pred CceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCC-EEEEEeCCCCcEEE
Q 023864 106 FTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK-TGFIYDQNNLNKLE 184 (276)
Q Consensus 106 FTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~-~v~V~D~~tlk~i~ 184 (276)
...||+++++|+||.+.. +...|++||++++++.........+. ..+...++.||...+..+ .++++|+++.....
T Consensus 132 ~P~~la~d~~g~lyv~d~--~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQR--DDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CEEEEEECSTTEEEEEET--TTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CceEEEEeCCCCEEEEec--CCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 467999999999999865 78899999999998876655544443 333334678999999776 99999998765544
Q ss_pred EE----e--cCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeee-eeeEEE--CCEEEEEeCCC
Q 023864 185 EF----T--HQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNL-NELEFI--KGEVWANVWQV 255 (276)
Q Consensus 185 ~~----~--~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~l-NELE~i--dG~lyANvw~s 255 (276)
.+ . ...+.+..+++++..||++|...+|+.+|+++.+....-.....+..-.++ |.|.+. +|+||+.....
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~ 288 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL 288 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence 44 2 124567778887889999999889999999988643221112222211121 278887 58999999999
Q ss_pred CCeEEEEeCCCC
Q 023864 256 WPCIPYAYLQAF 267 (276)
Q Consensus 256 ~d~I~vIDp~T~ 267 (276)
++|.++|+...
T Consensus 289 -~~I~~~~~~g~ 299 (409)
T 3hrp_A 289 -SSVYKITPDGE 299 (409)
T ss_dssp -TEEEEECTTCC
T ss_pred -CEEEEEecCCC
Confidence 99999998763
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=4.9e-09 Score=90.58 Aligned_cols=162 Identities=12% Similarity=0.076 Sum_probs=115.3
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecC-CCceEEEEEEeC-CEEEEEEeeCCE
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLLG-EKLFQVTWLQKT 171 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~-~~~FgEGit~~g-~~LyqlTwk~~~ 171 (276)
+++.++.........|++++++|+||.+.. +...|.+||.+ |+........ ....+.||+++. +++|+.+..++.
T Consensus 110 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~--~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~ 186 (286)
T 1q7f_A 110 QFVRKFGATILQHPRGVTVDNKGRIIVVEC--KVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC 186 (286)
T ss_dssp CEEEEECTTTCSCEEEEEECTTSCEEEEET--TTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred cEEEEecCccCCCceEEEEeCCCCEEEEEC--CCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCE
Confidence 345566554445678999999999998765 67899999975 6666655433 234577999985 799999999999
Q ss_pred EEEEeCCCCcEEEEEecC----CCCeeEEeeCCCEEEEEC-CCc-eEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-
Q 023864 172 GFIYDQNNLNKLEEFTHQ----MKDGWGLATDGKVLFGSD-GSS-MLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI- 244 (276)
Q Consensus 172 v~V~D~~tlk~i~~~~~~----~~EGWGLT~Dg~~L~vSD-GS~-~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i- 244 (276)
+.+||++ .+.+.++... .+.|..+++|| .||+++ +.+ .|.++|++ .+.++.+...... ..+..+.+.
T Consensus 187 i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G-~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~---~~~~~i~~~~ 260 (286)
T 1q7f_A 187 VKVFNYE-GQYLRQIGGEGITNYPIGVGINSNG-EILIADNHNNFNLTIFTQD-GQLISALESKVKH---AQCFDVALMD 260 (286)
T ss_dssp EEEEETT-CCEEEEESCTTTSCSEEEEEECTTC-CEEEEECSSSCEEEEECTT-SCEEEEEEESSCC---SCEEEEEEET
T ss_pred EEEEcCC-CCEEEEEccCCccCCCcEEEECCCC-CEEEEeCCCCEEEEEECCC-CCEEEEEcccCCC---CcceeEEECC
Confidence 9999984 4666777532 23444455666 688888 555 99999965 6777777664321 134455565
Q ss_pred CCEEEEEeCCCCCeEEEEeCCC
Q 023864 245 KGEVWANVWQVWPCIPYAYLQA 266 (276)
Q Consensus 245 dG~lyANvw~s~d~I~vIDp~T 266 (276)
+|+||+..+ . ++|.+++...
T Consensus 261 ~g~l~vs~~-~-~~v~v~~~~~ 280 (286)
T 1q7f_A 261 DGSVVLASK-D-YRLYIYRYVQ 280 (286)
T ss_dssp TTEEEEEET-T-TEEEEEECSC
T ss_pred CCcEEEECC-C-CeEEEEEccc
Confidence 789999874 6 8999999866
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.4e-09 Score=97.04 Aligned_cols=164 Identities=13% Similarity=0.041 Sum_probs=122.1
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCC--CeEEEEeCCCCcEEEEeecC--------CCceEEEEEEeC-C
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGR--SSVRRVALETGKVEAINQME--------GSYFGEGLTLLG-E 160 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~--S~I~~iDl~tgkv~~~~~l~--------~~~FgEGit~~g-~ 160 (276)
..++|+++. .+..|+++++||++|.+.-.++. .+|.++| +|++. ++| .-....|++++. +
T Consensus 8 ~~~~v~~~~----~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~--~g~~~---~~p~~~~~~~~~~~~p~gv~~d~~g 78 (343)
T 2qe8_A 8 RLEVVAELS----LAPGNITLTPDGRLFLSLHQFYQPEMQVAELT--QDGLI---PFPPQSGNAIITFDTVLGIKSDGNG 78 (343)
T ss_dssp CCEEEEEES----SCEEEEEECTTSCEEEEECGGGCCSCSEEEEE--TTEEE---ESCCCCSSCCCCCSCEEEEEECSSS
T ss_pred eeEEEEEcC----CCcceEEECCCCCEEEEeCCCCCCceEEEEEC--CCCee---cCCCcccCcccceeEeeEEEEcCCC
Confidence 568888877 56789999999999988544433 4788888 77754 222 124677999985 8
Q ss_pred EEEEEEee-----CCEEEEEeCCCCcEEEEEecC--------CCCeeEEeeCCCEEEEECC----CceEEEEcCCCCcEE
Q 023864 161 KLFQVTWL-----QKTGFIYDQNNLNKLEEFTHQ--------MKDGWGLATDGKVLFGSDG----SSMLYQIDPQTLKVI 223 (276)
Q Consensus 161 ~LyqlTwk-----~~~v~V~D~~tlk~i~~~~~~--------~~EGWGLT~Dg~~L~vSDG----S~~L~viDp~t~~vi 223 (276)
+||++... .+++.+||+++.++++++..+ ...+..+.+++..+|++|. ...|.++|+++.+..
T Consensus 79 ~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~ 158 (343)
T 2qe8_A 79 IVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAA 158 (343)
T ss_dssp EEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEE
T ss_pred cEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEE
Confidence 99999987 689999999999999888753 1245556667889999983 679999999999887
Q ss_pred EEEEe-----------eeCCEee-------------eeeeeeEEE-CC-EEEEEeCCCCCeEEEEeCC
Q 023864 224 RKDIV-----------RYKGREV-------------RNLNELEFI-KG-EVWANVWQVWPCIPYAYLQ 265 (276)
Q Consensus 224 ~~I~V-----------~~~g~pv-------------~~lNELE~i-dG-~lyANvw~s~d~I~vIDp~ 265 (276)
+.+.- ..+|..+ ..+|.|.+. || .||+..+.. +.|.+||+.
T Consensus 159 r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~-~~l~~~~~~ 225 (343)
T 2qe8_A 159 RVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHS-TSMYRIKSA 225 (343)
T ss_dssp EECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSC-SEEEEEEHH
T ss_pred EEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCC-CeEEEEEHH
Confidence 65521 1234332 246878876 45 699999888 899999863
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.19 E-value=4.7e-09 Score=89.68 Aligned_cols=153 Identities=10% Similarity=-0.021 Sum_probs=110.1
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecC-CCceEEEEEEe-CCEEEEEEeeCCEEEEEeCCCCc
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNLN 181 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~-~~~FgEGit~~-g~~LyqlTwk~~~v~V~D~~tlk 181 (276)
.....++.++++|.||.++. +...|.++|++ |++. ...++ ......+++++ +++||+.+..++.++++|++ .+
T Consensus 61 ~~~~~~i~~~~~g~l~v~~~--~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~ 135 (300)
T 2qc5_A 61 DAKVMCLIVSSLGDIWFTEN--GANKIGKLSKK-GGFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT 135 (300)
T ss_dssp TCCEEEEEECTTSCEEEEET--TTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC
T ss_pred CCcceeEEECCCCCEEEEec--CCCeEEEECCC-CCeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CC
Confidence 35678999999999998765 67889999998 8763 44444 23457788887 57999999999999999998 44
Q ss_pred EEEEEecC--CCCeeEE--eeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCCC
Q 023864 182 KLEEFTHQ--MKDGWGL--ATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQV 255 (276)
Q Consensus 182 ~i~~~~~~--~~EGWGL--T~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~s 255 (276)
.. ++..+ .....++ .+||+ ||+++ +.+.|+.+|+ +.+... +..... ...++.+.+. +|.||+..+..
T Consensus 136 ~~-~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~---~~~~~~i~~d~~g~l~v~~~~~ 208 (300)
T 2qc5_A 136 IY-EYDLPNKGSYPAFITLGSDNA-LWFTENQNNSIGRITN-TGKLEE-YPLPTN---AAAPVGITSGNDGALWFVEIMG 208 (300)
T ss_dssp EE-EEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEE-EECSST---TCCEEEEEECTTSSEEEEETTT
T ss_pred EE-EccCCCCCCCceeEEECCCCC-EEEEecCCCeEEEECC-CCcEEE-eeCCCC---CCCcceEEECCCCCEEEEccCC
Confidence 43 44332 2234444 45666 88887 5889999999 666553 333221 1245556665 68999999888
Q ss_pred CCeEEEEeCCCCcEE
Q 023864 256 WPCIPYAYLQAFGSS 270 (276)
Q Consensus 256 ~d~I~vIDp~T~~v~ 270 (276)
+.|.++|+ +++..
T Consensus 209 -~~i~~~~~-~g~~~ 221 (300)
T 2qc5_A 209 -NKIGRITT-TGEIS 221 (300)
T ss_dssp -TEEEEECT-TCCEE
T ss_pred -CEEEEEcC-CCcEE
Confidence 99999999 55543
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.9e-09 Score=96.33 Aligned_cols=155 Identities=8% Similarity=0.059 Sum_probs=106.3
Q ss_pred ceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCC------c-EE-----EEeecCCCceEEEEEEe--CCEEEEEEeeCCE
Q 023864 107 TQGLLYAENDT-LFESTGLYGRSSVRRVALETG------K-VE-----AINQMEGSYFGEGLTLL--GEKLFQVTWLQKT 171 (276)
Q Consensus 107 TQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tg------k-v~-----~~~~l~~~~FgEGit~~--g~~LyqlTwk~~~ 171 (276)
..++.|+|||+ ||.+.. +.+.|++|+++.. + +. ....++......++++. ++.||+.+..++.
T Consensus 157 ~~~~~~spdg~~l~~~~~--~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~ 234 (361)
T 3scy_A 157 LHCVRITPDGKYLLADDL--GTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGT 234 (361)
T ss_dssp EEEEEECTTSSEEEEEET--TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCE
T ss_pred ceEEEECCCCCEEEEEeC--CCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCe
Confidence 36799999986 887543 7889999977643 3 22 23344443344567775 4589999999999
Q ss_pred EEEEeCCCCc--EEEEEecCC-----CCeeEEeeCCCEEEEEC-C-CceEEEEcC--CCCc--EEEEEEeeeCCEeeeee
Q 023864 172 GFIYDQNNLN--KLEEFTHQM-----KDGWGLATDGKVLFGSD-G-SSMLYQIDP--QTLK--VIRKDIVRYKGREVRNL 238 (276)
Q Consensus 172 v~V~D~~tlk--~i~~~~~~~-----~EGWGLT~Dg~~L~vSD-G-S~~L~viDp--~t~~--vi~~I~V~~~g~pv~~l 238 (276)
+.+||.++.+ .+.++.... +.+..+++||++||+++ + .+.|.++|. ++.+ .+..+..+ . .+
T Consensus 235 v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g---~---~~ 308 (361)
T 3scy_A 235 VIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTG---I---HP 308 (361)
T ss_dssp EEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECS---S---CC
T ss_pred EEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCC---C---CC
Confidence 9999987554 355555321 12666889999999988 5 678888654 5555 44455542 1 34
Q ss_pred eeeEEE-CC-EEEEEeCCCCCeEEE--EeCCCCcEE
Q 023864 239 NELEFI-KG-EVWANVWQVWPCIPY--AYLQAFGSS 270 (276)
Q Consensus 239 NELE~i-dG-~lyANvw~s~d~I~v--IDp~T~~v~ 270 (276)
..+.+. || +||+....+ +.|.+ +|+++|+..
T Consensus 309 ~~~~~spdg~~l~~~~~~~-~~v~v~~~d~~~g~~~ 343 (361)
T 3scy_A 309 RNFIITPNGKYLLVACRDT-NVIQIFERDQATGLLT 343 (361)
T ss_dssp CEEEECTTSCEEEEEETTT-TEEEEEEECTTTCCEE
T ss_pred ceEEECCCCCEEEEEECCC-CCEEEEEEECCCCcEe
Confidence 456665 55 599998888 88888 899998754
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.6e-09 Score=95.94 Aligned_cols=168 Identities=11% Similarity=0.071 Sum_probs=111.6
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEee---cCCCceEEEEEEeCCEEEEEEeeCC
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQ---MEGSYFGEGLTLLGEKLFQVTWLQK 170 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~---l~~~~FgEGit~~g~~LyqlTwk~~ 170 (276)
+.+....+... ..+++|+|||+||.++..-+...|..||+++|+...... .+..+.+..+..+++.||+..+.++
T Consensus 31 ~~~~~~~~~~~--p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~ 108 (347)
T 3hfq_A 31 TNDGLLAATQN--PTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKG 108 (347)
T ss_dssp EEEEEEEECSC--CCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTT
T ss_pred EEeeeeeccCC--cceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCC
Confidence 44455555433 358999999998876532246889999998887433222 2344443333444678999999999
Q ss_pred EEEEEeCC---CCcEEEEEecCC-----------CCeeEEeeCCCEEEEEC-CCceEEEEcCC-CCcEEEEEEeee-CCE
Q 023864 171 TGFIYDQN---NLNKLEEFTHQM-----------KDGWGLATDGKVLFGSD-GSSMLYQIDPQ-TLKVIRKDIVRY-KGR 233 (276)
Q Consensus 171 ~v~V~D~~---tlk~i~~~~~~~-----------~EGWGLT~Dg~~L~vSD-GS~~L~viDp~-t~~vi~~I~V~~-~g~ 233 (276)
.+.+||.+ +++.+.++.... +.+..+++||+ ||+++ +.++|+++|.+ +.++........ .|.
T Consensus 109 ~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~ 187 (347)
T 3hfq_A 109 TAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGF 187 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTC
T ss_pred EEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCC
Confidence 99999986 566677765431 12367889999 99988 68899999988 565443222211 121
Q ss_pred eeeeeeeeEEE-CC-EEEEEeCCCCCeEEEEeCC--CCc
Q 023864 234 EVRNLNELEFI-KG-EVWANVWQVWPCIPYAYLQ--AFG 268 (276)
Q Consensus 234 pv~~lNELE~i-dG-~lyANvw~s~d~I~vIDp~--T~~ 268 (276)
.++.+.+. || +||+..... +.|.++|.+ +++
T Consensus 188 ---~p~~~~~spdg~~l~v~~~~~-~~v~v~~~~~~~g~ 222 (347)
T 3hfq_A 188 ---GPRHLVFSPDGQYAFLAGELS-SQIASLKYDTQTGA 222 (347)
T ss_dssp ---CEEEEEECTTSSEEEEEETTT-TEEEEEEEETTTTE
T ss_pred ---CCceEEECCCCCEEEEEeCCC-CEEEEEEecCCCCc
Confidence 23446665 56 599988778 888887765 454
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=3.9e-09 Score=91.19 Aligned_cols=152 Identities=10% Similarity=0.106 Sum_probs=111.2
Q ss_pred CCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecC-----CCceEEEEEEe--CCEEEEEEee-CCEEEEEe
Q 023864 105 AFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME-----GSYFGEGLTLL--GEKLFQVTWL-QKTGFIYD 176 (276)
Q Consensus 105 aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~-----~~~FgEGit~~--g~~LyqlTwk-~~~v~V~D 176 (276)
....+++++++|+||.+.. +...|.+||++ ++........ ......++++. +++||+.+.. ++.+.+||
T Consensus 30 ~~p~~v~~~~~g~l~v~~~--~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 30 TEPSGVAVNAQNDIIVADT--NNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp SCEEEEEECTTCCEEEEEG--GGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred CCCceEEECCCCCEEEEEC--CCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 4567999999999998755 67899999998 6665555321 12357899994 6899999986 89999999
Q ss_pred CCCCcEEEEEecC---CCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEE
Q 023864 177 QNNLNKLEEFTHQ---MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWAN 251 (276)
Q Consensus 177 ~~tlk~i~~~~~~---~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyAN 251 (276)
.+.+.+.++..+ .+.+..+.+||+ ||++| +.+.|+++|++ .+.+..+.... ....++-+.+. +|+||+.
T Consensus 107 -~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~---~~~~p~~i~~~~~g~l~v~ 180 (286)
T 1q7f_A 107 -QYGQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGCSK---HLEFPNGVVVNDKQEIFIS 180 (286)
T ss_dssp -TTSCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEECTT---TCSSEEEEEECSSSEEEEE
T ss_pred -CCCcEEEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCC-CCEEEEeCCCC---ccCCcEEEEECCCCCEEEE
Confidence 567777777543 234444566775 88888 67899999975 55655554321 12345666666 6899999
Q ss_pred eCCCCCeEEEEeCCC
Q 023864 252 VWQVWPCIPYAYLQA 266 (276)
Q Consensus 252 vw~s~d~I~vIDp~T 266 (276)
.+.. +.|.++|+..
T Consensus 181 ~~~~-~~i~~~~~~g 194 (286)
T 1q7f_A 181 DNRA-HCVKVFNYEG 194 (286)
T ss_dssp EGGG-TEEEEEETTC
T ss_pred ECCC-CEEEEEcCCC
Confidence 9888 9999999854
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.16 E-value=7.8e-10 Score=108.31 Aligned_cols=133 Identities=10% Similarity=0.007 Sum_probs=97.8
Q ss_pred EEEEEEecCC-----CCC-------ceEEEEe--cCC-EEEEEcCCCCCCeEEEEeCCCC----cEEEEee---c----C
Q 023864 94 QVVNEFPHDP-----RAF-------TQGLLYA--END-TLFESTGLYGRSSVRRVALETG----KVEAINQ---M----E 147 (276)
Q Consensus 94 ~Vv~~~Phd~-----~aF-------TQGL~~~--~dg-~LyeStG~yg~S~I~~iDl~tg----kv~~~~~---l----~ 147 (276)
+||.+.|... +-| ..|+.++ .++ +||.++. +++.|+++|.++. ++.+.++ + +
T Consensus 59 ~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l--~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g 136 (462)
T 2ece_A 59 KIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGL--RSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSG 136 (462)
T ss_dssp SEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBT--TTCCEEEEECCSCTTSCEEEEEECHHHHHHHHC
T ss_pred eEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccC--CCCeEEEEECCCCCCCceeeeeechhhcccccC
Confidence 5788777532 112 1144445 554 5888655 8999999999876 7777662 2 3
Q ss_pred CCceEEEEEEeCCEEEEEEeeC------CEEEEEeCCCCcEEEEEecC-CCCeeE----EeeCCCEEEEEC-C-------
Q 023864 148 GSYFGEGLTLLGEKLFQVTWLQ------KTGFIYDQNNLNKLEEFTHQ-MKDGWG----LATDGKVLFGSD-G------- 208 (276)
Q Consensus 148 ~~~FgEGit~~g~~LyqlTwk~------~~v~V~D~~tlk~i~~~~~~-~~EGWG----LT~Dg~~L~vSD-G------- 208 (276)
. -.+-++....+.||+.+-.+ +.++++|.+|++++++++.+ .+++.+ +.+|++.+|+|| |
T Consensus 137 ~-s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~ 215 (462)
T 2ece_A 137 Y-SRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIED 215 (462)
T ss_dssp E-EEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTT
T ss_pred C-CcccceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCcccccc
Confidence 1 14556666655588877776 79999999999999999854 334333 489999999998 3
Q ss_pred -----------CceEEEEcCCCCcEEEEEEee
Q 023864 209 -----------SSMLYQIDPQTLKVIRKDIVR 229 (276)
Q Consensus 209 -----------S~~L~viDp~t~~vi~~I~V~ 229 (276)
.++|+++|.++.+++++|.++
T Consensus 216 g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg 247 (462)
T 2ece_A 216 GLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLG 247 (462)
T ss_dssp CCCTTTHHHHSCCEEEEEETTTTEEEEEEESC
T ss_pred ccchhhhhhccCCEEEEEECCCCcEeeEEecC
Confidence 899999999999999999996
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=5.4e-09 Score=90.47 Aligned_cols=169 Identities=9% Similarity=0.004 Sum_probs=115.2
Q ss_pred EEEEEEecCCCCCceEEEEecCCE-EEEEcCCCCCCeEEEEeCCC-CcEEE----EeecCCCceEEEEEEe--CCEEEEE
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALET-GKVEA----INQMEGSYFGEGLTLL--GEKLFQV 165 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~t-gkv~~----~~~l~~~~FgEGit~~--g~~Lyql 165 (276)
+++..++... ...++.|++||+ ||.+.. ++..|.+||+++ +++.. ....+......++++. ++.||+.
T Consensus 120 ~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~ 195 (343)
T 1ri6_A 120 GVVDVVEGLD--GCHSANISPDNRTLWVPAL--KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCV 195 (343)
T ss_dssp EEEEEECCCT--TBCCCEECTTSSEEEEEEG--GGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEE
T ss_pred cccccccCCC--CceEEEECCCCCEEEEecC--CCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEE
Confidence 4566666533 457999999975 877653 678899999998 87643 2334433345567775 4579999
Q ss_pred EeeCCEEEEEeCCC--C--cEEEEEecCCCC---------eeEEeeCCCEEEEEC-CCceEEEEcCC----CCcEEEEEE
Q 023864 166 TWLQKTGFIYDQNN--L--NKLEEFTHQMKD---------GWGLATDGKVLFGSD-GSSMLYQIDPQ----TLKVIRKDI 227 (276)
Q Consensus 166 Twk~~~v~V~D~~t--l--k~i~~~~~~~~E---------GWGLT~Dg~~L~vSD-GS~~L~viDp~----t~~vi~~I~ 227 (276)
...++.+.+||.+. . +.+..+..- +. +..+++||+.||+++ +.+.|.++|.+ +++.+..+.
T Consensus 196 ~~~~~~i~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~ 274 (343)
T 1ri6_A 196 NELNSSVDVWELKDPHGNIECVQTLDMM-PENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP 274 (343)
T ss_dssp ETTTTEEEEEESSCTTSCCEEEEEEECS-CTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE
T ss_pred eCCCCEEEEEEecCCCCcEEEEeecccc-CccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec
Confidence 99999999999843 3 334444421 22 366889999999988 68899999987 445555555
Q ss_pred eeeCCEeeeeeeeeEEE-CC-EEEEEeCCCCCeEEEE--eCCCCc-EEEEEE
Q 023864 228 VRYKGREVRNLNELEFI-KG-EVWANVWQVWPCIPYA--YLQAFG-SSLVYV 274 (276)
Q Consensus 228 V~~~g~pv~~lNELE~i-dG-~lyANvw~s~d~I~vI--Dp~T~~-v~l~~~ 274 (276)
... .+..+.+. || +||+....+ +.|.+. |+++|+ ..+..+
T Consensus 275 ~~~------~~~~~~~s~dg~~l~~~~~~~-~~v~v~~~d~~~g~~~~~~~~ 319 (343)
T 1ri6_A 275 TET------QPRGFNVDHSGKYLIAAGQKS-HHISVYEIVGEQGLLHEKGRY 319 (343)
T ss_dssp CSS------SCCCEEECTTSSEEEEECTTT-CEEEEEEEETTTTEEEEEEEE
T ss_pred CCC------ccceEEECCCCCEEEEecCCC-CeEEEEEEcCCCceeeEcccc
Confidence 432 24456665 45 599998777 877776 888875 334443
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.5e-09 Score=106.23 Aligned_cols=176 Identities=14% Similarity=0.061 Sum_probs=120.2
Q ss_pred eeeEEEEEEecC--CCCCceEEEEecCCE-EEEEc---------CC-------CCCCeEEEEeCCCCcEEEEeecCC-Cc
Q 023864 91 YTIQVVNEFPHD--PRAFTQGLLYAENDT-LFEST---------GL-------YGRSSVRRVALETGKVEAINQMEG-SY 150 (276)
Q Consensus 91 ~t~~Vv~~~Phd--~~aFTQGL~~~~dg~-LyeSt---------G~-------yg~S~I~~iDl~tgkv~~~~~l~~-~~ 150 (276)
.+.+|+.+++.+ +..|-..+-|++++. +|.|. |. ...++|++||+++++++++++++. .-
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 457899999854 445655688899865 55542 00 136899999999999999999973 23
Q ss_pred eEEEEEE--e--CCEEEEEEe-----eCCEEEEEeCC--CCcEEEEEec--------------------CCCCeeEEeeC
Q 023864 151 FGEGLTL--L--GEKLFQVTW-----LQKTGFIYDQN--NLNKLEEFTH--------------------QMKDGWGLATD 199 (276)
Q Consensus 151 FgEGit~--~--g~~LyqlTw-----k~~~v~V~D~~--tlk~i~~~~~--------------------~~~EGWGLT~D 199 (276)
-+-++.+ + +..+|+++. .++.+++|..+ +++.++.+.. ..+.+..+++|
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D 331 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD 331 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence 3345544 3 679999999 99999865433 3333333311 13567779999
Q ss_pred CCEEEEEC-CCceEEEEcC---CCCcEEEEEEeeeC--------CEee-eeeeeeEEE-CC-EEEEEeC-----------
Q 023864 200 GKVLFGSD-GSSMLYQIDP---QTLKVIRKDIVRYK--------GREV-RNLNELEFI-KG-EVWANVW----------- 253 (276)
Q Consensus 200 g~~L~vSD-GS~~L~viDp---~t~~vi~~I~V~~~--------g~pv-~~lNELE~i-dG-~lyANvw----------- 253 (276)
|++||+|| |.+.|.++|. .+.+++++|.++-. |.++ ..+..++.. || +|||.+-
T Consensus 332 GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaNsl~~~wd~Qfyp 411 (462)
T 2ece_A 332 DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTNSLYSTWDNQFYP 411 (462)
T ss_dssp SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEECCCCHHHHHHHST
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEcCCcccccccccC
Confidence 99999999 8999999884 46789999999721 1111 134455564 44 7998772
Q ss_pred --CCCCeEEEE--eCCCC
Q 023864 254 --QVWPCIPYA--YLQAF 267 (276)
Q Consensus 254 --~s~d~I~vI--Dp~T~ 267 (276)
.. ..+.+| |+++|
T Consensus 412 ~~~~-~~~~~~~vd~~~G 428 (462)
T 2ece_A 412 EGLK-GWMVKLNANPSGG 428 (462)
T ss_dssp TCCC-CEEEEEEECTTSC
T ss_pred CCCc-eEEEEEEecCCCC
Confidence 23 467655 99997
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=4.1e-09 Score=91.24 Aligned_cols=164 Identities=10% Similarity=0.089 Sum_probs=115.8
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCE-EEEEcCCCCCCeEEEEeCC--CCcEE--EEeecCCCceEEEEEEe--CCEEEE
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALE--TGKVE--AINQMEGSYFGEGLTLL--GEKLFQ 164 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~--tgkv~--~~~~l~~~~FgEGit~~--g~~Lyq 164 (276)
+.+.+..++|... ..++.|++||+ ||.+.. +...|..||++ +|++. .....+..+ .++++. ++.||+
T Consensus 27 ~~~~~~~~~~~~~--~~~~~~spdg~~l~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~dg~~l~~ 100 (343)
T 1ri6_A 27 ALTLTQVVDVPGQ--VQPMVVSPDKRYLYVGVR--PEFRVLAYRIAPDDGALTFAAESALPGSL--THISTDHQGQFVFV 100 (343)
T ss_dssp CEEEEEEEECSSC--CCCEEECTTSSEEEEEET--TTTEEEEEEECTTTCCEEEEEEEECSSCC--SEEEECTTSSEEEE
T ss_pred cEEEeeeEecCCC--CceEEECCCCCEEEEeec--CCCeEEEEEecCCCCceeeccccccCCCC--cEEEEcCCCCEEEE
Confidence 3456777887543 45999999986 776543 55899998887 77654 344444444 456654 568999
Q ss_pred EEeeCCEEEEEeC---CCCcEEEEEecC-CCCeeEEeeCCCEEEEEC-CCceEEEEcCCC-CcEEEEE--Eeee-CCEee
Q 023864 165 VTWLQKTGFIYDQ---NNLNKLEEFTHQ-MKDGWGLATDGKVLFGSD-GSSMLYQIDPQT-LKVIRKD--IVRY-KGREV 235 (276)
Q Consensus 165 lTwk~~~v~V~D~---~tlk~i~~~~~~-~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t-~~vi~~I--~V~~-~g~pv 235 (276)
....++.+.+||. .+.+.+..++.. .+.+..+++||+.||+++ +.+.|.++|.++ .++.... .... .+.
T Consensus 101 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~-- 178 (343)
T 1ri6_A 101 GSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGA-- 178 (343)
T ss_dssp EETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTC--
T ss_pred EecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCC--
Confidence 9999999999999 556666666543 356677899999999998 889999999887 6654322 2221 121
Q ss_pred eeeeeeEEE-CC-EEEEEeCCCCCeEEEEeCC
Q 023864 236 RNLNELEFI-KG-EVWANVWQVWPCIPYAYLQ 265 (276)
Q Consensus 236 ~~lNELE~i-dG-~lyANvw~s~d~I~vIDp~ 265 (276)
.++.+.+. +| +||+....+ +.|.++|..
T Consensus 179 -~~~~~~~~pdg~~l~~~~~~~-~~i~~~~~~ 208 (343)
T 1ri6_A 179 -GPRHMVFHPNEQYAYCVNELN-SSVDVWELK 208 (343)
T ss_dssp -CEEEEEECTTSSEEEEEETTT-TEEEEEESS
T ss_pred -CcceEEECCCCCEEEEEeCCC-CEEEEEEec
Confidence 34456665 45 599888888 999999984
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=99.15 E-value=9.1e-09 Score=96.93 Aligned_cols=159 Identities=12% Similarity=0.006 Sum_probs=114.5
Q ss_pred CCCceEEEEec-CCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeC-CEEEEEeCCC
Q 023864 104 RAFTQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQ-KTGFIYDQNN 179 (276)
Q Consensus 104 ~aFTQGL~~~~-dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~-~~v~V~D~~t 179 (276)
-....||+++. ++.||.+.. +...|.++|++.......+. .....+.||+++ ++.||...|.+ +++.++|.+.
T Consensus 158 ~~~p~glavD~~~~~lY~~d~--~~~~I~~~~~~g~~~~~l~~-~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG 234 (400)
T 3p5b_L 158 IQAPDGLAVDWIHSNIYWTDS--VLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 234 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEET--TTTEEEEECTTTCSEEEEEE-CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS
T ss_pred CCCcccEEEEecCCceEEEEC--CCCeEEEEeCCCCceEEEEe-CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC
Confidence 34568999997 588999865 77899999998765433332 122336788887 58999999974 8999999875
Q ss_pred CcEEEEEe--cCCCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCCC
Q 023864 180 LNKLEEFT--HQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQVW 256 (276)
Q Consensus 180 lk~i~~~~--~~~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s~ 256 (276)
.....-+. ...|.|.++.+++++||++| +.++|+.+|.+.... +.+.... ..+.++.-|...+++||...|..
T Consensus 235 ~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~--~~l~~P~gl~v~~~~lywtd~~~- 310 (400)
T 3p5b_L 235 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDE--KRLAHPFSLAVFEDKVFWTDIIN- 310 (400)
T ss_dssp CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-EEEEECS--STTSSEEEEEEETTEEEEEESSS-
T ss_pred CccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-EEEEeCC--CCCCCCEEEEEeCCEEEEecCCC-
Confidence 44333232 22356777778899999999 689999999875433 3332221 12334556778899999999999
Q ss_pred CeEEEEeCCCCcE
Q 023864 257 PCIPYAYLQAFGS 269 (276)
Q Consensus 257 d~I~vIDp~T~~v 269 (276)
+.|.++|+.+|+.
T Consensus 311 ~~V~~~~~~~G~~ 323 (400)
T 3p5b_L 311 EAIFSANRLTGSD 323 (400)
T ss_dssp CSEEEEESSSCCC
T ss_pred CeEEEEEcCCCCc
Confidence 9999999988753
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-08 Score=87.33 Aligned_cols=162 Identities=10% Similarity=0.065 Sum_probs=112.8
Q ss_pred EEEEecC-CCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecC-CCceEEEEEEe-CCEEEEEEeeCCEE
Q 023864 96 VNEFPHD-PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLL-GEKLFQVTWLQKTG 172 (276)
Q Consensus 96 v~~~Phd-~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~-~~~FgEGit~~-g~~LyqlTwk~~~v 172 (276)
+.+++.. ......+|+++++|+||.++. +...|.++|++ +++.. ..++ ......+++++ ++++|+.+..++.+
T Consensus 5 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~--~~~~v~~~d~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i 80 (299)
T 2z2n_A 5 LQELNLTNQDTGPYGITVSDKGKVWITQH--KANMISCINLD-GKITE-YPLPTPDAKVMCLTISSDGEVWFTENAANKI 80 (299)
T ss_dssp EEEEECCSSSCCEEEEEECTTSCEEEEET--TTTEEEEECTT-CCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEE
T ss_pred EEEEcCCCcCCCccceEECCCCCEEEEec--CCCcEEEEcCC-CCeEE-ecCCcccCceeeEEECCCCCEEEeCCCCCeE
Confidence 3444442 335678999999999998765 67899999999 77643 3333 33457788886 57999999999999
Q ss_pred EEEeCCCCcEEEEEecC--CCCeeEEeeC-CCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCE
Q 023864 173 FIYDQNNLNKLEEFTHQ--MKDGWGLATD-GKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGE 247 (276)
Q Consensus 173 ~V~D~~tlk~i~~~~~~--~~EGWGLT~D-g~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~ 247 (276)
+++|++ .....+..+ .....+++.| ...||+++ +.+.|+.+|+ +.+... +..... ...++.|.+. +|.
T Consensus 81 ~~~~~~--g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~-~~~~~~---~~~~~~i~~~~~g~ 153 (299)
T 2z2n_A 81 GRITKK--GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIRE-YELPNK---GSYPSFITLGSDNA 153 (299)
T ss_dssp EEECTT--SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-EECSST---TCCEEEEEECTTSC
T ss_pred EEECCC--CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEE-ecCCCC---CCCCceEEEcCCCC
Confidence 999987 234455432 2234555543 23688876 6889999999 665542 222211 2245666666 689
Q ss_pred EEEEeCCCCCeEEEEeCCCCcEE
Q 023864 248 VWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 248 lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
+|+..+.. +.|.++|+ +++..
T Consensus 154 l~v~~~~~-~~i~~~~~-~g~~~ 174 (299)
T 2z2n_A 154 LWFTENQN-NAIGRITE-SGDIT 174 (299)
T ss_dssp EEEEETTT-TEEEEECT-TCCEE
T ss_pred EEEEeCCC-CEEEEEcC-CCcEE
Confidence 99999888 99999999 76654
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=99.12 E-value=5.4e-09 Score=95.86 Aligned_cols=156 Identities=8% Similarity=0.042 Sum_probs=111.6
Q ss_pred CCceEEEEec-CCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEee-CCEEEEEeCCCC
Q 023864 105 AFTQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWL-QKTGFIYDQNNL 180 (276)
Q Consensus 105 aFTQGL~~~~-dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk-~~~v~V~D~~tl 180 (276)
....||+++. ++.||.+.. +...|.++|++........ -.....+.||+++ ++.||...|. .+++.++|++.-
T Consensus 79 ~~p~glavd~~~g~ly~~d~--~~~~I~~~~~dG~~~~~l~-~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~ 155 (318)
T 3sov_A 79 LSPDGLACDWLGEKLYWTDS--ETNRIEVSNLDGSLRKVLF-WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS 155 (318)
T ss_dssp SCCCEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEE-CSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC
T ss_pred CCccEEEEEcCCCeEEEEEC--CCCEEEEEECCCCcEEEEE-eCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC
Confidence 3457999996 588999865 7789999999764322111 1222346788887 5899999996 699999998743
Q ss_pred c--EEEEEecCCCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCCCC
Q 023864 181 N--KLEEFTHQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQVWP 257 (276)
Q Consensus 181 k--~i~~~~~~~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s~d 257 (276)
. .+..-....|.|.++.++++.||++| +.++|+.+|.+... .+.+.-+ ...+++-|...++.||.+.|.. +
T Consensus 156 ~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~~----~~~~P~glav~~~~lywtd~~~-~ 229 (318)
T 3sov_A 156 SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAVVKG----SLPHPFALTLFEDILYWTDWST-H 229 (318)
T ss_dssp SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECS----CCSCEEEEEEETTEEEEEETTT-T
T ss_pred CeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc-eEEEecC----CCCCceEEEEeCCEEEEEecCC-C
Confidence 2 22111122356777778899999999 69999999987432 2222211 2345667888899999999999 9
Q ss_pred eEEEEeCCCCcE
Q 023864 258 CIPYAYLQAFGS 269 (276)
Q Consensus 258 ~I~vIDp~T~~v 269 (276)
.|.++|+.+|+.
T Consensus 230 ~V~~~~~~~G~~ 241 (318)
T 3sov_A 230 SILACNKYTGEG 241 (318)
T ss_dssp EEEEEETTTCCS
T ss_pred eEEEEECCCCCc
Confidence 999999998763
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.12 E-value=2e-09 Score=91.61 Aligned_cols=153 Identities=8% Similarity=0.154 Sum_probs=107.9
Q ss_pred CCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe-CCEEEEEEeeCCEEEEEeCCCCcEE
Q 023864 105 AFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNLNKL 183 (276)
Q Consensus 105 aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~-g~~LyqlTwk~~~v~V~D~~tlk~i 183 (276)
....|++++++|+||.+.. +...|.++|..+.+..... ......+.||+++ +++||+.+..++.+++||+++.+..
T Consensus 108 ~~p~~i~~~~~g~l~v~~~--~~~~i~~~~~~~~~~~~~~-~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~ 184 (270)
T 1rwi_B 108 NYPEGLAVDTQGAVYVADR--GNNRVVKLAAGSKTQTVLP-FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV 184 (270)
T ss_dssp SSEEEEEECTTCCEEEEEG--GGTEEEEECTTCCSCEECC-CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEE
T ss_pred CCCcceEECCCCCEEEEEC--CCCEEEEEECCCceeEeec-cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceE
Confidence 5668999999999998765 6789999988776543321 1222245688887 4789999999999999999887654
Q ss_pred EEEecCCCCeeEE--eeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCCCCCeE
Q 023864 184 EEFTHQMKDGWGL--ATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQVWPCI 259 (276)
Q Consensus 184 ~~~~~~~~EGWGL--T~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~s~d~I 259 (276)
.....+.....++ .+|| .||+++ +.+.|+++|+++..... ....+ ...+..+.+. +|.||+..+.. ++|
T Consensus 185 ~~~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~~~~---~~~~~--~~~p~~i~~~~~g~l~v~~~~~-~~v 257 (270)
T 1rwi_B 185 VLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTTSTV---LPFTG--LNTPLAVAVDSDRTVYVADRGN-DRV 257 (270)
T ss_dssp ECCCSSCCSEEEEEECTTC-CEEEEETTTSCEEEECTTCSCCEE---CCCCS--CSCEEEEEECTTCCEEEEEGGG-TEE
T ss_pred eecccCCCCceEEEECCCC-CEEEEECCCCcEEEEcCCCCccee---eccCC--CCCceeEEECCCCCEEEEECCC-CEE
Confidence 3322111234454 4555 899988 68899999998765432 11111 2345556665 68999999999 999
Q ss_pred EEEeCCCC
Q 023864 260 PYAYLQAF 267 (276)
Q Consensus 260 ~vIDp~T~ 267 (276)
.+++....
T Consensus 258 ~~~~~~~~ 265 (270)
T 1rwi_B 258 VKLTSLEH 265 (270)
T ss_dssp EEECCCGG
T ss_pred EEEcCCCc
Confidence 99998763
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1e-08 Score=90.34 Aligned_cols=160 Identities=11% Similarity=0.101 Sum_probs=109.7
Q ss_pred CCCceEEEEecCCEEEEEcCCCCC----CeEEEEeCCCCcEEEEee-cCCCceEEEEEEe-CCEEEEEEee------CCE
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGR----SSVRRVALETGKVEAINQ-MEGSYFGEGLTLL-GEKLFQVTWL------QKT 171 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~----S~I~~iDl~tgkv~~~~~-l~~~~FgEGit~~-g~~LyqlTwk------~~~ 171 (276)
.....++.+++||+||.++. +. ..|.+||++++++..... .+......+++++ ++++|+.+.. .+.
T Consensus 86 ~~~~~~i~~~~dg~l~v~~~--~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~ 163 (333)
T 2dg1_A 86 KANPAAIKIHKDGRLFVCYL--GDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGG 163 (333)
T ss_dssp SSSEEEEEECTTSCEEEEEC--TTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEE
T ss_pred CCCcceEEECCCCcEEEEeC--CCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCce
Confidence 45568999999999998765 33 689999999998653332 2233345677876 4789999885 478
Q ss_pred EEEEeCCCCcEEEEEe-cCCCCeeEEeeCCCEEEEEC-CCceEEEEcCCC-CcEEEE----EEeeeCCEeeeeeeeeEEE
Q 023864 172 GFIYDQNNLNKLEEFT-HQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQT-LKVIRK----DIVRYKGREVRNLNELEFI 244 (276)
Q Consensus 172 v~V~D~~tlk~i~~~~-~~~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t-~~vi~~----I~V~~~g~pv~~lNELE~i 244 (276)
++.+|+++.+...... ...+.|..+++||+.||+++ +.+.|+++|+++ .+.... +.....+. ..++.|.+.
T Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~--~~~~~i~~d 241 (333)
T 2dg1_A 164 VYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH--EGPDSCCID 241 (333)
T ss_dssp EEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS--SEEEEEEEB
T ss_pred EEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC--CCCCceEEC
Confidence 9999988755432222 12246667789999999987 578999999864 333222 22211121 234556665
Q ss_pred -CCEEEEEeCCCCCeEEEEeCCCCcE
Q 023864 245 -KGEVWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 245 -dG~lyANvw~s~d~I~vIDp~T~~v 269 (276)
+|.||+..+.. +.|.++|++ ++.
T Consensus 242 ~~G~l~v~~~~~-~~v~~~d~~-g~~ 265 (333)
T 2dg1_A 242 SDDNLYVAMYGQ-GRVLVFNKR-GYP 265 (333)
T ss_dssp TTCCEEEEEETT-TEEEEECTT-SCE
T ss_pred CCCCEEEEEcCC-CEEEEECCC-CCE
Confidence 68999999888 999999995 453
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.10 E-value=4.6e-09 Score=91.04 Aligned_cols=159 Identities=13% Similarity=0.125 Sum_probs=108.2
Q ss_pred CCceEEEEecC-CEEEEEcCCCCCCeEEEEeCCCCcEEEE-eecCC---CceEEEEEEe-CCEEEEEEeeC---------
Q 023864 105 AFTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAI-NQMEG---SYFGEGLTLL-GEKLFQVTWLQ--------- 169 (276)
Q Consensus 105 aFTQGL~~~~d-g~LyeStG~yg~S~I~~iDl~tgkv~~~-~~l~~---~~FgEGit~~-g~~LyqlTwk~--------- 169 (276)
....|+.+++| |+||.++. + +.|.+||++ |++... ..... .....+++++ +++||+.+...
T Consensus 71 ~~~~~i~~~~~~g~l~v~~~--~-~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~ 146 (314)
T 1pjx_A 71 GIPAGCQCDRDANQLFVADM--R-LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR 146 (314)
T ss_dssp CCEEEEEECSSSSEEEEEET--T-TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred CCCceEEEecCCCcEEEEEC--C-CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence 34579999999 99998765 2 389999999 887543 32211 1234578886 47999999875
Q ss_pred ------CEEEEEeCCCCcEEEEEe-cCCCCeeEEe----eCCCEEEEEC-CCceEEEEcCC-CCcEEEEEEe-eeCCEee
Q 023864 170 ------KTGFIYDQNNLNKLEEFT-HQMKDGWGLA----TDGKVLFGSD-GSSMLYQIDPQ-TLKVIRKDIV-RYKGREV 235 (276)
Q Consensus 170 ------~~v~V~D~~tlk~i~~~~-~~~~EGWGLT----~Dg~~L~vSD-GS~~L~viDp~-t~~vi~~I~V-~~~g~pv 235 (276)
+.++.+|++ .+...... ...+.|..++ +||+.||++| +.+.|+++|++ +.+....-.. ...+...
T Consensus 147 ~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~ 225 (314)
T 1pjx_A 147 SMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE 225 (314)
T ss_dssp TTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS
T ss_pred cccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC
Confidence 689999987 44433222 1234677788 8899999998 68899999976 4543321111 1111110
Q ss_pred eeeeeeEEE-CCEEEEEeCCCCCeEEEEeCCCCcE
Q 023864 236 RNLNELEFI-KGEVWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 236 ~~lNELE~i-dG~lyANvw~s~d~I~vIDp~T~~v 269 (276)
..++.|.+. +|.||+..+.. +.|.++|+++++.
T Consensus 226 ~~p~~i~~d~~G~l~v~~~~~-~~i~~~d~~~g~~ 259 (314)
T 1pjx_A 226 GGADGMDFDEDNNLLVANWGS-SHIEVFGPDGGQP 259 (314)
T ss_dssp CEEEEEEEBTTCCEEEEEETT-TEEEEECTTCBSC
T ss_pred CCCCceEECCCCCEEEEEcCC-CEEEEEcCCCCcE
Confidence 234556665 68999999988 9999999997653
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.9e-08 Score=88.56 Aligned_cols=166 Identities=10% Similarity=0.014 Sum_probs=120.4
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe-CCEEEEEEee-C
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWL-Q 169 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~-g~~LyqlTwk-~ 169 (276)
+-+++-+++.....-...+.+++||++|.+ +...|..+|+ +|+++.+.+.+......++... ++++++.... .
T Consensus 24 tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs----~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~ 98 (276)
T 3no2_A 24 TKEIVWEYPLEKGWECNSVAATKAGEILFS----YSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHP 98 (276)
T ss_dssp TTEEEEEEECCTTCCCCEEEECTTSCEEEE----CBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTT
T ss_pred CCeEEEEeCCCccCCCcCeEECCCCCEEEe----CCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCC
Confidence 557788887643234468899999998885 3467999999 8999999988743333344443 5677777666 7
Q ss_pred CEEEEEeCCCCcEEEEEecCC--------CCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeee
Q 023864 170 KTGFIYDQNNLNKLEEFTHQM--------KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNEL 241 (276)
Q Consensus 170 ~~v~V~D~~tlk~i~~~~~~~--------~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNEL 241 (276)
++++.+|+ +.+.+.+++... +.+....+||+.++...+..+|..+|++ ++++.+..... .|..- .
T Consensus 99 ~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~--~~~~~---~ 171 (276)
T 3no2_A 99 STILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSG--TPFSS---A 171 (276)
T ss_dssp EEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSS--CCCEE---E
T ss_pred CEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCC--Cccce---e
Confidence 89999997 788888887541 1233466788877665578999999998 99988877652 23221 1
Q ss_pred EEECCEEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 242 EFIKGEVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 242 E~idG~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
...+|.+++..... ++|..+|++||+++
T Consensus 172 ~~~~g~~~v~~~~~-~~v~~~d~~tG~~~ 199 (276)
T 3no2_A 172 FLDNGDCLVACGDA-HCFVQLNLESNRIV 199 (276)
T ss_dssp ECTTSCEEEECBTT-SEEEEECTTTCCEE
T ss_pred EcCCCCEEEEeCCC-CeEEEEeCcCCcEE
Confidence 12378888888778 89999999998765
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.6e-09 Score=95.36 Aligned_cols=158 Identities=8% Similarity=0.019 Sum_probs=110.3
Q ss_pred CCceEEEEec-CCEEEEEcCC--C-------------CCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC--CEEEEEE
Q 023864 105 AFTQGLLYAE-NDTLFESTGL--Y-------------GRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG--EKLFQVT 166 (276)
Q Consensus 105 aFTQGL~~~~-dg~LyeStG~--y-------------g~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g--~~LyqlT 166 (276)
.+..++.+++ +|+||.+... | ....|.++|++++++..... .-.++.||++.. +.||+..
T Consensus 126 ~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~--~~~~p~gia~~~dg~~lyv~d 203 (322)
T 2fp8_A 126 KWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK--ELHVPGGAEVSADSSFVLVAE 203 (322)
T ss_dssp SCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE--EESCCCEEEECTTSSEEEEEE
T ss_pred cccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEecc--CCccCcceEECCCCCEEEEEe
Confidence 4678999999 9999997642 1 23679999999997643321 123456888874 4799999
Q ss_pred eeCCEEEEEeCCCCc--EEEEE-ecCCCCeeEEeeCCCEEEEEC-C----------CceEEEEcCCCCcEEEEEEeeeCC
Q 023864 167 WLQKTGFIYDQNNLN--KLEEF-THQMKDGWGLATDGKVLFGSD-G----------SSMLYQIDPQTLKVIRKDIVRYKG 232 (276)
Q Consensus 167 wk~~~v~V~D~~tlk--~i~~~-~~~~~EGWGLT~Dg~~L~vSD-G----------S~~L~viDp~t~~vi~~I~V~~~g 232 (276)
..++++.+||.++.+ ....+ ..+.|.|..+.+|| .||+++ + ...|..+||+ ++++..+.+.. |
T Consensus 204 ~~~~~I~~~~~~~~~~~~~~~~~~~~gP~gi~~d~~G-~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~-g 280 (322)
T 2fp8_A 204 FLSHQIVKYWLEGPKKGTAEVLVKIPNPGNIKRNADG-HFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPP-P 280 (322)
T ss_dssp GGGTEEEEEESSSTTTTCEEEEEECSSEEEEEECTTS-CEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCT-T
T ss_pred CCCCeEEEEECCCCcCCccceEEeCCCCCCeEECCCC-CEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCC-C
Confidence 999999999987521 12222 12224555556666 499988 4 4689999985 88888877653 3
Q ss_pred EeeeeeeeeEEECCEEEEEeCCCCCeEEEEeCCCCc
Q 023864 233 REVRNLNELEFIKGEVWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 233 ~pv~~lNELE~idG~lyANvw~s~d~I~vIDp~T~~ 268 (276)
.++..+..+...+|+||+..+.. +.|.++|++..+
T Consensus 281 ~~~~~~~~~~~~~g~L~v~~~~~-~~i~~~~~~~~~ 315 (322)
T 2fp8_A 281 FAGEHFEQIQEHDGLLYIGTLFH-GSVGILVYDKKG 315 (322)
T ss_dssp TTTSCCCEEEEETTEEEEECSSC-SEEEEEEC----
T ss_pred CccccceEEEEeCCEEEEeecCC-CceEEEeccccc
Confidence 33455556666799999999999 999999998643
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=4.4e-09 Score=93.90 Aligned_cols=154 Identities=11% Similarity=0.024 Sum_probs=106.3
Q ss_pred CceEEEEec-CCEEEEEcCCCCCCeEEEEeCCCCcEEEEee-cC--CCceEEEEEEeC--CEEEEEEee-----------
Q 023864 106 FTQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQ-ME--GSYFGEGLTLLG--EKLFQVTWL----------- 168 (276)
Q Consensus 106 FTQGL~~~~-dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~-l~--~~~FgEGit~~g--~~LyqlTwk----------- 168 (276)
...|+++++ +|+||+++. + ..|.++|++++++..-.. .+ ...+..+++++. ++||+.+..
T Consensus 81 ~p~gi~~~~~~g~l~v~d~--~-~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~ 157 (322)
T 2fp8_A 81 RTYDISYNLQNNQLYIVDC--Y-YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQI 157 (322)
T ss_dssp CEEEEEEETTTTEEEEEET--T-TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHH
T ss_pred CCceEEEcCCCCcEEEEEC--C-CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCccccccccccee
Confidence 356999997 799999755 2 349999998875432221 11 124678899974 799999875
Q ss_pred ------CCEEEEEeCCCCcEEEEEe-cCCCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcE--EEEEEeeeCCEeeeee
Q 023864 169 ------QKTGFIYDQNNLNKLEEFT-HQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKV--IRKDIVRYKGREVRNL 238 (276)
Q Consensus 169 ------~~~v~V~D~~tlk~i~~~~-~~~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~v--i~~I~V~~~g~pv~~l 238 (276)
.+.++++|+++.+...... ...+.|..+++||+.||++| +.++|+++|+++.+. .+.+. ...| +
T Consensus 158 ~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~-~~~g-----P 231 (322)
T 2fp8_A 158 MDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV-KIPN-----P 231 (322)
T ss_dssp HHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEE-ECSS-----E
T ss_pred hcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEE-eCCC-----C
Confidence 3789999998776432221 22468888999999999998 678999999875321 11111 1223 4
Q ss_pred eeeEEE-CCEEEEEeCC----------CCCeEEEEeCCCCcEE
Q 023864 239 NELEFI-KGEVWANVWQ----------VWPCIPYAYLQAFGSS 270 (276)
Q Consensus 239 NELE~i-dG~lyANvw~----------s~d~I~vIDp~T~~v~ 270 (276)
+-|... +|.||+..|. . +.|.++||+ |+++
T Consensus 232 ~gi~~d~~G~l~va~~~~~~~~~~~~~~-~~v~~~d~~-G~~~ 272 (322)
T 2fp8_A 232 GNIKRNADGHFWVSSSEELDGNMHGRVD-PKGIKFDEF-GNIL 272 (322)
T ss_dssp EEEEECTTSCEEEEEEEETTSSTTSCEE-EEEEEECTT-SCEE
T ss_pred CCeEECCCCCEEEEecCcccccccCCCc-cEEEEECCC-CCEE
Confidence 445555 5789999987 6 789999996 4543
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=3.3e-08 Score=89.54 Aligned_cols=153 Identities=10% Similarity=0.033 Sum_probs=108.7
Q ss_pred CCceEEEEecC-CEEEEEcCCCCCCeEEEEeCCC---CcEEEEeecC-CCceEEEEEEe--CCEEEEEEeeCCEEEEEeC
Q 023864 105 AFTQGLLYAEN-DTLFESTGLYGRSSVRRVALET---GKVEAINQME-GSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQ 177 (276)
Q Consensus 105 aFTQGL~~~~d-g~LyeStG~yg~S~I~~iDl~t---gkv~~~~~l~-~~~FgEGit~~--g~~LyqlTwk~~~v~V~D~ 177 (276)
....|+.|+++ ++||.+.. +...|.++|+++ +.....+ ++ .-..++|++++ +++||.....++++.++|+
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~--~~~~I~~~~~~g~~~~~~~~~~-~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~ 106 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDL--SQRMICSTQLDRAHGVSSYDTV-ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 106 (316)
T ss_dssp SSEEEEEEETTTTEEEEEET--TTTEEEEEEC--------CEEE-ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CceEEEEEEeCCCEEEEEEC--CCCcEEEEECCCCCCCcccEEE-EeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeC
Confidence 34579999974 78999865 788999999986 2221221 22 12346789986 6899999999999999998
Q ss_pred CCCcEEEEEe--cCCCCeeEEeeCCCEEEEEC-CC-ceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE--CCEEEEE
Q 023864 178 NNLNKLEEFT--HQMKDGWGLATDGKVLFGSD-GS-SMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGEVWAN 251 (276)
Q Consensus 178 ~tlk~i~~~~--~~~~EGWGLT~Dg~~L~vSD-GS-~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i--dG~lyAN 251 (276)
+......-+. ...|.|..+.+++..||++| |. .+|+.+|++. +..+.+ +.. .+..+|-|.+. +++||+.
T Consensus 107 ~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~-~~~---~~~~P~gla~d~~~~~lY~~ 181 (316)
T 1ijq_A 107 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSL-VTE---NIQWPNGITLDLLSGRLYWV 181 (316)
T ss_dssp TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEE-ECS---SCSCEEEEEEETTTTEEEEE
T ss_pred CCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEE-EEC---CCCCceEEEEeccCCEEEEE
Confidence 7654333333 22456666777899999999 54 7999999863 333322 221 35678899987 6799999
Q ss_pred eCCCCCeEEEEeCCC
Q 023864 252 VWQVWPCIPYAYLQA 266 (276)
Q Consensus 252 vw~s~d~I~vIDp~T 266 (276)
.+.. +.|.++|+..
T Consensus 182 D~~~-~~I~~~d~dg 195 (316)
T 1ijq_A 182 DSKL-HSISSIDVNG 195 (316)
T ss_dssp ETTT-TEEEEEETTS
T ss_pred ECCC-CeEEEEecCC
Confidence 9999 9999999974
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.8e-08 Score=94.21 Aligned_cols=155 Identities=12% Similarity=-0.003 Sum_probs=114.4
Q ss_pred CCCceEEEEec-CCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeCCEEEEEeCCCC
Q 023864 104 RAFTQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNL 180 (276)
Q Consensus 104 ~aFTQGL~~~~-dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~~~v~V~D~~tl 180 (276)
.....|+.|++ +++||.+.- ....|++++++++.+...+..+ ...++|++++ +++||...+..+++.++|++..
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~--~~~~I~r~~~~g~~~~~~~~~~-~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~ 191 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDV--TLDRILRANLNGSNVEEVVSTG-LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA 191 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCCEEEEECSS-CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSC
T ss_pred CCccEEEEEecCCCeEEEEeC--CCCcEEEEecCCCCcEEEEeCC-CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCC
Confidence 34568999995 578998854 7789999999987654433222 2345788887 6899999999999999998765
Q ss_pred cEEEEEec--CCCCeeEEeeCCCEEEEEC-CC-ceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE--CCEEEEEeCC
Q 023864 181 NKLEEFTH--QMKDGWGLATDGKVLFGSD-GS-SMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGEVWANVWQ 254 (276)
Q Consensus 181 k~i~~~~~--~~~EGWGLT~Dg~~L~vSD-GS-~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i--dG~lyANvw~ 254 (276)
.....+.. ..|.|..+.+++..||++| +. .+|+.+|++..... .+ +.. .+..+|-|.+. +++||+..+.
T Consensus 192 ~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~~-~~~---~~~~PnGlavd~~~~~lY~aD~~ 266 (386)
T 3v65_B 192 HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-II-ADT---HLFWPNGLTIDYAGRRMYWVDAK 266 (386)
T ss_dssp SCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EE-ECS---SCSCEEEEEEEGGGTEEEEEETT
T ss_pred ceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE-EE-EEC---CCCCeeeEEEeCCCCEEEEEECC
Confidence 43333332 2456777778899999999 66 89999998754332 22 211 24568888886 7899999999
Q ss_pred CCCeEEEEeCCCC
Q 023864 255 VWPCIPYAYLQAF 267 (276)
Q Consensus 255 s~d~I~vIDp~T~ 267 (276)
. +.|.++|+...
T Consensus 267 ~-~~I~~~d~dG~ 278 (386)
T 3v65_B 267 H-HVIERANLDGS 278 (386)
T ss_dssp T-TEEEEECTTSC
T ss_pred C-CEEEEEeCCCC
Confidence 9 99999998753
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.05 E-value=5.4e-08 Score=83.00 Aligned_cols=164 Identities=7% Similarity=0.019 Sum_probs=115.5
Q ss_pred EEEEEEecC-CCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC-CceEEEEEEeC-CEEEEEEeeCC
Q 023864 94 QVVNEFPHD-PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG-SYFGEGLTLLG-EKLFQVTWLQK 170 (276)
Q Consensus 94 ~Vv~~~Phd-~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~-~~FgEGit~~g-~~LyqlTwk~~ 170 (276)
.-+++++.. ......++.++++|+||.++. +...|.++|++ +++.. ..++. .....+++++. +++|+.+..++
T Consensus 8 ~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~--~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~ 83 (300)
T 2qc5_A 8 FYLEEFNLSIPDSGPYGITSSEDGKVWFTQH--KANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGAN 83 (300)
T ss_dssp EEEEEEECSSTTCCEEEEEECTTSCEEEEET--TTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTT
T ss_pred eeEEEEecCCCCCCcceeeECCCCCEEEEcC--CCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCCC
Confidence 345666552 345678999999999999865 67899999998 87754 44553 25677898874 78999999899
Q ss_pred EEEEEeCCCCcEEEEEecC--CCCeeEEeeC-CCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-C
Q 023864 171 TGFIYDQNNLNKLEEFTHQ--MKDGWGLATD-GKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-K 245 (276)
Q Consensus 171 ~v~V~D~~tlk~i~~~~~~--~~EGWGLT~D-g~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-d 245 (276)
.+++||++ .+. .++..+ .....+++-| ...||+++ +.+.|+.+|++ .++. .+.... ....++.+.+. +
T Consensus 84 ~v~~~d~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~---~~~~~~~i~~d~~ 156 (300)
T 2qc5_A 84 KIGKLSKK-GGF-TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EYDLPN---KGSYPAFITLGSD 156 (300)
T ss_dssp EEEEECTT-SCE-EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EEECSS---TTCCEEEEEECTT
T ss_pred eEEEECCC-CCe-EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-EccCCC---CCCCceeEEECCC
Confidence 99999988 444 455542 1234455543 33578877 58899999998 6655 333221 12345666664 6
Q ss_pred CEEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 246 GEVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 246 G~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
|.||+..... +.|.++|+ +++..
T Consensus 157 g~l~v~~~~~-~~i~~~~~-~g~~~ 179 (300)
T 2qc5_A 157 NALWFTENQN-NSIGRITN-TGKLE 179 (300)
T ss_dssp SSEEEEETTT-TEEEEECT-TCCEE
T ss_pred CCEEEEecCC-CeEEEECC-CCcEE
Confidence 7899999888 99999999 65543
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=2.3e-08 Score=90.57 Aligned_cols=165 Identities=10% Similarity=0.060 Sum_probs=106.1
Q ss_pred EEEEecCCCCCceEEEEecCCE-EEEEcCCCCCCeEEEEeCC-CCcEEE--EeecCC-CceEEEEEEe--CCEEEEEEee
Q 023864 96 VNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALE-TGKVEA--INQMEG-SYFGEGLTLL--GEKLFQVTWL 168 (276)
Q Consensus 96 v~~~Phd~~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~-tgkv~~--~~~l~~-~~FgEGit~~--g~~LyqlTwk 168 (276)
+..++++......++.|+|||+ ||.+. .+.+.|++||++ +|++.. ...++. .....++++. ++.||+.++.
T Consensus 136 ~~~~~~~~~~~~~~~~~spdG~~l~~~~--~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~ 213 (365)
T 1jof_A 136 VQNYEYQENTGIHGMVFDPTETYLYSAD--LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA 213 (365)
T ss_dssp EEEEECCTTCCEEEEEECTTSSEEEEEE--TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETT
T ss_pred EeeEEeCCCCcceEEEECCCCCEEEEEc--CCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECC
Confidence 4445555567788999999985 77654 377899999998 888643 334432 3335566765 5689999999
Q ss_pred CCEEEEEeC--CCCcEE---EEEec-CC--------------CCeeE-EeeCCCEEEEEC-CCc-----eEEEEcCC-CC
Q 023864 169 QKTGFIYDQ--NNLNKL---EEFTH-QM--------------KDGWG-LATDGKVLFGSD-GSS-----MLYQIDPQ-TL 220 (276)
Q Consensus 169 ~~~v~V~D~--~tlk~i---~~~~~-~~--------------~EGWG-LT~Dg~~L~vSD-GS~-----~L~viDp~-t~ 220 (276)
++.+.+||. ++.+.. .++.. +. +.+.. +++||++||+++ +.+ +|.++|.+ ++
T Consensus 214 ~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g 293 (365)
T 1jof_A 214 GNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCG 293 (365)
T ss_dssp TTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTS
T ss_pred CCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCC
Confidence 999988764 455542 33432 10 22345 679999999998 555 89888875 67
Q ss_pred cEEEEEE-eeeCCEeeeeeeeeEE-----ECCEEEEEeCCCCCeEEEEeCCC
Q 023864 221 KVIRKDI-VRYKGREVRNLNELEF-----IKGEVWANVWQVWPCIPYAYLQA 266 (276)
Q Consensus 221 ~vi~~I~-V~~~g~pv~~lNELE~-----idG~lyANvw~s~d~I~vIDp~T 266 (276)
++..... +...+. .+..+.+ .+++||+.+..+ +.|.++|.+.
T Consensus 294 ~~~~~~~~~~~~~~---~~~~~a~sp~~~dg~~l~v~~~~~-~~v~v~~~~~ 341 (365)
T 1jof_A 294 SIEKQLFLSPTPTS---GGHSNAVSPCPWSDEWMAITDDQE-GWLEIYRWKD 341 (365)
T ss_dssp CEEEEEEEEECSSC---CTTCCCEEECTTCTTEEEEECSSS-CEEEEEEEET
T ss_pred CEEEeeeeeecCCC---CcccceecCCCcCCCEEEEEEcCC-CeEEEEEEch
Confidence 6554221 211111 1111222 244799988778 8888876655
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.1e-08 Score=92.45 Aligned_cols=154 Identities=12% Similarity=0.006 Sum_probs=113.3
Q ss_pred CCceEEEEec-CCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeCCEEEEEeCCCCc
Q 023864 105 AFTQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLN 181 (276)
Q Consensus 105 aFTQGL~~~~-dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~~~v~V~D~~tlk 181 (276)
....||.|++ +++||.+.- ....|++++++++.+...+..+ ...++|++++ +++||...+..+.+.++|++...
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~--~~~~I~r~~~~g~~~~~~~~~~-~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~ 149 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDV--TLDRILRANLNGSNVEEVVSTG-LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH 149 (349)
T ss_dssp SCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEECSS-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CceEEEEEeccccEEEEEec--cCCceEEEecCCCCceEEEeCC-CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc
Confidence 3467999995 578998754 7789999999987654333222 2345788887 68999999999999999987654
Q ss_pred EEEEEec--CCCCeeEEeeCCCEEEEEC-CC-ceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE--CCEEEEEeCCC
Q 023864 182 KLEEFTH--QMKDGWGLATDGKVLFGSD-GS-SMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGEVWANVWQV 255 (276)
Q Consensus 182 ~i~~~~~--~~~EGWGLT~Dg~~L~vSD-GS-~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i--dG~lyANvw~s 255 (276)
...-+.. ..|.|..+.+++..||++| +. .+|+.+|++.-... .+ +. ..+..+|-|.+. +|+||+.-+..
T Consensus 150 ~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~~-~~---~~~~~PnGla~d~~~~~lY~aD~~~ 224 (349)
T 3v64_C 150 RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-II-AD---THLFWPNGLTIDYAGRRMYWVDAKH 224 (349)
T ss_dssp CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-ES-CC---SSCSCEEEEEEETTTTEEEEEETTT
T ss_pred eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE-EE-EE---CCCCCcceEEEeCCCCEEEEEECCC
Confidence 3322322 2456777788899999999 66 89999998753222 21 11 124578889987 68999999999
Q ss_pred CCeEEEEeCCCC
Q 023864 256 WPCIPYAYLQAF 267 (276)
Q Consensus 256 ~d~I~vIDp~T~ 267 (276)
+.|.++|+...
T Consensus 225 -~~I~~~~~dG~ 235 (349)
T 3v64_C 225 -HVIERANLDGS 235 (349)
T ss_dssp -TEEEEEETTSC
T ss_pred -CEEEEEeCCCC
Confidence 99999998753
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.2e-08 Score=103.37 Aligned_cols=158 Identities=11% Similarity=-0.026 Sum_probs=113.4
Q ss_pred CCCceEEEEecC-CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeC-CEEEEEeCCC
Q 023864 104 RAFTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQ-KTGFIYDQNN 179 (276)
Q Consensus 104 ~aFTQGL~~~~d-g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~-~~v~V~D~~t 179 (276)
-....||+++.. ++||.+.. +...|.++|++.......+. ..-..+.||+++ +++||...|.. +++.++|++.
T Consensus 470 l~~P~GLAvD~~~~~LY~tD~--~~~~I~v~~ldG~~~~~l~~-~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG 546 (791)
T 3m0c_C 470 IQAPDGLAVDWIHSNIYWTDS--VLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 546 (791)
T ss_dssp CSCCCEEEEETTTTEEEEEET--TTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred CCCcceeeeeecCCcEEEEec--CCCeEEEEeCCCCeEEEEEe-CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCC
Confidence 345579999965 58999855 78899999998654322221 222236788886 58999999987 8999999876
Q ss_pred CcEEEEEecC--CCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCCC
Q 023864 180 LNKLEEFTHQ--MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQVW 256 (276)
Q Consensus 180 lk~i~~~~~~--~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s~ 256 (276)
.....-+... .|.|.+|.+++++||++| +.++|.++|++.......+.. +..+.++.-|.+.+++||+..|..
T Consensus 547 ~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~---~~~l~~P~glav~~~~lYwtD~~~- 622 (791)
T 3m0c_C 547 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED---EKRLAHPFSLAVFEDKVFWTDIIN- 622 (791)
T ss_dssp CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC---TTTTSSEEEEEEETTEEEEEETTT-
T ss_pred CceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecC---CCccCCCCEEEEeCCEEEEEECCC-
Confidence 5544334322 345566667799999999 689999999875443322221 112234455778899999999999
Q ss_pred CeEEEEeCCCCc
Q 023864 257 PCIPYAYLQAFG 268 (276)
Q Consensus 257 d~I~vIDp~T~~ 268 (276)
+.|.++|..+|+
T Consensus 623 ~~I~~~dk~tG~ 634 (791)
T 3m0c_C 623 EAIFSANRLTGS 634 (791)
T ss_dssp TEEEEEETTTCC
T ss_pred CEEEEEeCCCCc
Confidence 999999998875
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.00 E-value=3.7e-08 Score=87.83 Aligned_cols=173 Identities=11% Similarity=0.063 Sum_probs=120.5
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCC-CCeEEEEeCCCCcEEEEeecCCC-----ceEEEEEEe-CCEEEEEE
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYG-RSSVRRVALETGKVEAINQMEGS-----YFGEGLTLL-GEKLFQVT 166 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg-~S~I~~iDl~tgkv~~~~~l~~~-----~FgEGit~~-g~~LyqlT 166 (276)
+++-++.........+..+.+||+++.+.. + ...|..+|+ +|+++.+..++.. ....+++.. ++.+++..
T Consensus 66 ~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~--~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~ 142 (276)
T 3no2_A 66 RELWNIAAPAGCEMQTARILPDGNALVAWC--GHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPL 142 (276)
T ss_dssp CEEEEEECCTTCEEEEEEECTTSCEEEEEE--STTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEE
T ss_pred CEEEEEcCCCCccccccEECCCCCEEEEec--CCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEe
Confidence 566777653344567888999998777655 4 778999997 7888888776432 122344443 46777788
Q ss_pred eeCCEEEEEeCCCCcEEEEEecC-CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeee-CCEeeeeeeeeEEE
Q 023864 167 WLQKTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY-KGREVRNLNELEFI 244 (276)
Q Consensus 167 wk~~~v~V~D~~tlk~i~~~~~~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~-~g~pv~~lNELE~i 244 (276)
..++++.+||++ .+++.++..+ .+.+-...++|+.++.+.+..+|..+|++|++++-++...+ ++.++..+.-+...
T Consensus 143 ~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~ 221 (276)
T 3no2_A 143 FATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPL 221 (276)
T ss_dssp TTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEEC
T ss_pred cCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEc
Confidence 889999999998 9999999865 23343345567777665567799999999999998887543 23333334433333
Q ss_pred -CCEEEEEeCCC---------CCeEEEEeCCCCcEEE
Q 023864 245 -KGEVWANVWQV---------WPCIPYAYLQAFGSSL 271 (276)
Q Consensus 245 -dG~lyANvw~s---------~d~I~vIDp~T~~v~l 271 (276)
||.+|+..|+. +..+..||+ +|+++-
T Consensus 222 ~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~-~g~~~W 257 (276)
T 3no2_A 222 QNGGLYICNWQGHDREAGKGKHPQLVEIDS-EGKVVW 257 (276)
T ss_dssp TTSCEEEEEECTTCTTGGGSCCCSEEEECT-TSBEEE
T ss_pred CCCCEEEEeccCccccccccCCceEEEECC-CCCEEE
Confidence 88999999743 146999998 667653
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.97 E-value=6.7e-08 Score=90.99 Aligned_cols=154 Identities=8% Similarity=0.054 Sum_probs=111.7
Q ss_pred CCceEEEEec-CCEEEEEcCCCCCCeEEEEeCCCCc----EEEEeecCCCceEEEEEEe--CCEEEEEEeeCCEEEEEeC
Q 023864 105 AFTQGLLYAE-NDTLFESTGLYGRSSVRRVALETGK----VEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQ 177 (276)
Q Consensus 105 aFTQGL~~~~-dg~LyeStG~yg~S~I~~iDl~tgk----v~~~~~l~~~~FgEGit~~--g~~LyqlTwk~~~v~V~D~ 177 (276)
....||.|++ +++||.+.- ....|++++++... ....+ -..-..++||+++ +++||.+.+..+++.++|+
T Consensus 112 ~~~~~l~~d~~~~~lywsD~--~~~~I~~~~~~g~~~~~~~~~~~-~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~ 188 (400)
T 3p5b_L 112 RNVVALDTEVASNRIYWSDL--SQRMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 188 (400)
T ss_dssp SCEEEEEEETTTTEEEEEET--TTTEEEEEEC------CCCEEEE-CSSCSCEEEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred CcceEEeeeeccCceEEEec--CCCeEEEEEcccCCCCCcceEEE-eCCCCCcccEEEEecCCceEEEECCCCeEEEEeC
Confidence 3457999996 478999855 67899999997632 21111 1123457899997 6999999999999999999
Q ss_pred CCCcEEEEEecC--CCCeeEEeeCCCEEEEEC-C-CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE--CCEEEEE
Q 023864 178 NNLNKLEEFTHQ--MKDGWGLATDGKVLFGSD-G-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGEVWAN 251 (276)
Q Consensus 178 ~tlk~i~~~~~~--~~EGWGLT~Dg~~L~vSD-G-S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i--dG~lyAN 251 (276)
+.......+... .|.|..+.+.+..||++| | ..+|+.+|++.......+.. .+..+|.|.+. +++||+.
T Consensus 189 ~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~-----~l~~P~glavd~~~~~lY~a 263 (400)
T 3p5b_L 189 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE-----NIQWPNGITLDLLSGRLYWV 263 (400)
T ss_dssp TTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECS-----SCSCEEEEEEETTTTEEEEE
T ss_pred CCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEEC-----CCCceEEEEEEeCCCEEEEE
Confidence 876654444422 356777788899999999 6 47999999875433222221 24578889888 6799999
Q ss_pred eCCCCCeEEEEeCCCC
Q 023864 252 VWQVWPCIPYAYLQAF 267 (276)
Q Consensus 252 vw~s~d~I~vIDp~T~ 267 (276)
-+.. +.|.++|.+..
T Consensus 264 D~~~-~~I~~~d~dG~ 278 (400)
T 3p5b_L 264 DSKL-HSISSIDVNGG 278 (400)
T ss_dssp ETTT-TEEEEEETTSC
T ss_pred ECCC-CEEEEEeCCCC
Confidence 9999 99999998753
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.96 E-value=3.9e-07 Score=82.26 Aligned_cols=173 Identities=7% Similarity=-0.019 Sum_probs=120.6
Q ss_pred eeeEEEEEEecCCC---C-CceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecC---------CCceEEEEEE
Q 023864 91 YTIQVVNEFPHDPR---A-FTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME---------GSYFGEGLTL 157 (276)
Q Consensus 91 ~t~~Vv~~~Phd~~---a-FTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~---------~~~FgEGit~ 157 (276)
.+.+++=+++.... . ..-...+. ++++|..+. +..|..+|.+||+++-+.+++ ...+.-+.+.
T Consensus 26 ~~~~~~W~~~~~~~~~~~~~~~~p~v~-~~~v~~~~~---~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 101 (376)
T 3q7m_A 26 FTPTTAWSTSVGSGIGNFYSNLHPALA-DNVVYAADR---AGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV 101 (376)
T ss_dssp SCCEEEEEECCTTTTTTSCCCCCCEEE-TTEEEEECT---TSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE
T ss_pred CcceEEeEEecCCCccccceeeccEEE-CCEEEEEcC---CCeEEEEEccCCceeeeecCccccccccccCcccccCceE
Confidence 45567767665321 1 11244555 589998654 458999999999998777775 3456677888
Q ss_pred eCCEEEEEEeeCCEEEEEeCCCCcEEEEEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeee
Q 023864 158 LGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRN 237 (276)
Q Consensus 158 ~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~ 237 (276)
.++++|+.+. ++.++.+|++|.+++-+++.+..-.-....+++.+|+......|+.+|++|++++-+............
T Consensus 102 ~~~~v~v~~~-~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~ 180 (376)
T 3q7m_A 102 SGGHVYIGSE-KAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRG 180 (376)
T ss_dssp ETTEEEEEET-TSEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CC
T ss_pred eCCEEEEEcC-CCEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecC
Confidence 9999999885 578999999999999888765111112233467888877788999999999999877766431111111
Q ss_pred eeeeEEECCEEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 238 LNELEFIKGEVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 238 lNELE~idG~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
.......+|.||+.. .. ..|..+|++||++.
T Consensus 181 ~~~~~~~~~~v~~g~-~~-g~l~~~d~~tG~~~ 211 (376)
T 3q7m_A 181 ESAPTTAFGAAVVGG-DN-GRVSAVLMEQGQMI 211 (376)
T ss_dssp CCCCEEETTEEEECC-TT-TEEEEEETTTCCEE
T ss_pred CCCcEEECCEEEEEc-CC-CEEEEEECCCCcEE
Confidence 123345689999865 34 68999999998865
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.96 E-value=7.8e-08 Score=90.54 Aligned_cols=154 Identities=13% Similarity=0.081 Sum_probs=106.9
Q ss_pred CCCceEEEEec-CCEEEEEcCCCCCCeEEEEeCCCCcEEEEe---ecC---CCceEEEEEEe--CCEEEEEEeeCCEEEE
Q 023864 104 RAFTQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAIN---QME---GSYFGEGLTLL--GEKLFQVTWLQKTGFI 174 (276)
Q Consensus 104 ~aFTQGL~~~~-dg~LyeStG~yg~S~I~~iDl~tgkv~~~~---~l~---~~~FgEGit~~--g~~LyqlTwk~~~v~V 174 (276)
.....|+++++ +|.||.+. ....|.+||+++++..... ..+ ..|+ -|++++ +++||+....++++.+
T Consensus 218 ~~~p~~iav~p~~g~lyv~d---~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~-~~ia~~p~~g~lyv~d~~~~~I~~ 293 (409)
T 3hrp_A 218 SGKIGAVALDETEEWLYFVD---SNKNFGRFNVKTQEVTLIKQLELSGSLGTNPG-PYLIYYFVDSNFYMSDQNLSSVYK 293 (409)
T ss_dssp CSCCCBCEECTTSSEEEEEC---TTCEEEEEETTTCCEEEEEECCCCSCCCCSSC-CEEEEETTTTEEEEEETTTTEEEE
T ss_pred cCCcEEEEEeCCCCeEEEEE---CCCcEEEEECCCCCEEEEecccccCCCCCCcc-ccEEEeCCCCEEEEEeCCCCEEEE
Confidence 45557999999 68999843 3568999999988753321 111 1223 177776 5899999999999999
Q ss_pred EeCCCCcEEEEE-e----------------cCCCCeeEEeeCCCEEEEEC--CCceEEEEcCCCCcEEEEEEee-e----
Q 023864 175 YDQNNLNKLEEF-T----------------HQMKDGWGLATDGKVLFGSD--GSSMLYQIDPQTLKVIRKDIVR-Y---- 230 (276)
Q Consensus 175 ~D~~tlk~i~~~-~----------------~~~~EGWGLT~Dg~~L~vSD--GS~~L~viDp~t~~vi~~I~V~-~---- 230 (276)
+|.+.. +..+ . +..|.|..+.+||+ ||++| +.++|..+|+.++++....-.. .
T Consensus 294 ~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~ 370 (409)
T 3hrp_A 294 ITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQI 370 (409)
T ss_dssp ECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCC
T ss_pred EecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcC
Confidence 998753 2222 1 11245556667877 99998 5789999998788754332220 1
Q ss_pred CC----EeeeeeeeeEEE-CCEEEEEeCCCCCeEEEEeCC
Q 023864 231 KG----REVRNLNELEFI-KGEVWANVWQVWPCIPYAYLQ 265 (276)
Q Consensus 231 ~g----~pv~~lNELE~i-dG~lyANvw~s~d~I~vIDp~ 265 (276)
+| ..+..++.+.+. +|.||++.|.. ++|.+|+++
T Consensus 371 ~g~~~~~~~~~P~giavd~~g~lyVad~~n-~~Ir~i~~e 409 (409)
T 3hrp_A 371 DGTPLEATFNYPYDICYDGEGGYWIAEAWG-KAIRKYAVE 409 (409)
T ss_dssp CBSTTTCCBSSEEEEEECSSSEEEEEESTT-CEEEEEEEC
T ss_pred CCChhceEeCCceEEEEcCCCCEEEEECCC-CeEEEEEeC
Confidence 11 124567777777 48999999999 999999875
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.4e-07 Score=94.48 Aligned_cols=153 Identities=10% Similarity=0.070 Sum_probs=110.5
Q ss_pred CceEEEEecC-CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEee-CCEEEEEeCCCCc
Q 023864 106 FTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWL-QKTGFIYDQNNLN 181 (276)
Q Consensus 106 FTQGL~~~~d-g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk-~~~v~V~D~~tlk 181 (276)
...||+++.. ++||.+.. +...|.++|++......-.. ..-..+.||+++ ++.||...|. .+++..+|++.-.
T Consensus 81 ~P~GlAvD~~~~~LY~tD~--~~~~I~v~~~dG~~~~~l~~-~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~ 157 (628)
T 4a0p_A 81 YPEGMAVDWLGKNLYWADT--GTNRIEVSKLDGQHRQVLVW-KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE 157 (628)
T ss_dssp CCCEEEEETTTTEEEEEET--TTTEEEEEETTSTTCEEEEC-SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CcceEEEEeCCCEEEEEEC--CCCEEEEEecCCCcEEEEEe-CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc
Confidence 4579999854 78999755 88999999997653211111 222336788998 6899999997 6899999986543
Q ss_pred EEEEEe-cCCCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCCCCeE
Q 023864 182 KLEEFT-HQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQVWPCI 259 (276)
Q Consensus 182 ~i~~~~-~~~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s~d~I 259 (276)
...-+. ...|.|.++.+++++||++| +.++|..+|++.... ++....-. ++--|...+++||+..|.. +.|
T Consensus 158 ~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~--~v~~~~l~----~P~glav~~~~ly~tD~~~-~~I 230 (628)
T 4a0p_A 158 RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR--EVIADDLP----HPFGLTQYQDYIYWTDWSR-RSI 230 (628)
T ss_dssp CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEEECCS----CEEEEEEETTEEEEEETTT-TEE
T ss_pred eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce--EEeeccCC----CceEEEEECCEEEEecCCC-CEE
Confidence 322222 22356677778899999999 799999999876544 22222222 4445778899999999999 999
Q ss_pred EEEeCCCCc
Q 023864 260 PYAYLQAFG 268 (276)
Q Consensus 260 ~vIDp~T~~ 268 (276)
.++|..||+
T Consensus 231 ~~~dk~tg~ 239 (628)
T 4a0p_A 231 ERANKTSGQ 239 (628)
T ss_dssp EEEETTTCC
T ss_pred EEEECCCCC
Confidence 999998875
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.94 E-value=4e-08 Score=93.80 Aligned_cols=157 Identities=9% Similarity=-0.036 Sum_probs=108.4
Q ss_pred CCceEEEEec-CCEEEEEcCCCCCCeEEEEeCCCCcE-EEEeecCCCceEEEEEEe--CCEEEEEEeeCCEEEEEeCC--
Q 023864 105 AFTQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKV-EAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQN-- 178 (276)
Q Consensus 105 aFTQGL~~~~-dg~LyeStG~yg~S~I~~iDl~tgkv-~~~~~l~~~~FgEGit~~--g~~LyqlTwk~~~v~V~D~~-- 178 (276)
....|+++++ +|.||++.. +...|+++|+++|++ ......+....+-||+++ +++||++.+.++.+.++|.+
T Consensus 228 ~~P~giavd~~~G~lyv~d~--~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~ 305 (433)
T 4hw6_A 228 RGAKTCAVHPQNGKIYYTRY--HHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRE 305 (433)
T ss_dssp SSBCCCEECTTTCCEEECBT--TCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTT
T ss_pred CCCCEEEEeCCCCeEEEEEC--CCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCC
Confidence 3457999999 789998754 788999999999987 333344443333467776 46799999999999998854
Q ss_pred CCcE--EEEEe-c-C-------------CCCeeEEee----------CCCEEEEEC-CCceEEEEcCCCCcEEEEEEeee
Q 023864 179 NLNK--LEEFT-H-Q-------------MKDGWGLAT----------DGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRY 230 (276)
Q Consensus 179 tlk~--i~~~~-~-~-------------~~EGWGLT~----------Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~ 230 (276)
+.+. ...+. . + ....+|++- ++..||++| +.++|..+|| ++++....-.+.
T Consensus 306 ~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~t~~G~g~ 384 (433)
T 4hw6_A 306 TGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVTTYAGRGN 384 (433)
T ss_dssp TCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEEEEECCCT
T ss_pred CcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEEEEEeCCC
Confidence 3221 11221 0 0 123455664 456899999 7899999997 564432222111
Q ss_pred -------CC-----EeeeeeeeeEEE--CCEEEEEeCCCCCeEEEEeCC
Q 023864 231 -------KG-----REVRNLNELEFI--KGEVWANVWQVWPCIPYAYLQ 265 (276)
Q Consensus 231 -------~g-----~pv~~lNELE~i--dG~lyANvw~s~d~I~vIDp~ 265 (276)
+| ..+.++..+.+. +|.||++.+.. ++|.+|+++
T Consensus 385 ~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n-~rIr~i~~e 432 (433)
T 4hw6_A 385 SREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDN-HRVRKIAPE 432 (433)
T ss_dssp TCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGG-TEEEEEEEC
T ss_pred CCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCC-CEEEEEecC
Confidence 12 134567788888 78999999999 999999986
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=6.1e-08 Score=87.33 Aligned_cols=152 Identities=11% Similarity=0.062 Sum_probs=103.4
Q ss_pred CceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC---CceEEEEEEe-CCEEEEEEee------CCEEEEE
Q 023864 106 FTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG---SYFGEGLTLL-GEKLFQVTWL------QKTGFIY 175 (276)
Q Consensus 106 FTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~---~~FgEGit~~-g~~LyqlTwk------~~~v~V~ 175 (276)
...++.+++||++|.++. +.|.++|+++|++......+. .....+++++ ++++|+.+.. .+.++.+
T Consensus 91 ~v~~i~~~~dg~l~v~~~----~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~ 166 (326)
T 2ghs_A 91 MGSALAKISDSKQLIASD----DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV 166 (326)
T ss_dssp CEEEEEEEETTEEEEEET----TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred cceEEEEeCCCeEEEEEC----CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEE
Confidence 467999999999998763 459999999998755444332 2245567776 4689998874 3689999
Q ss_pred eCCCCcEEEEEe-cCCCCeeEEeeCCCEEEEEC-CCceEEEEcCC--CC-cEE--EEE-Eee-eCCEeeeeeeeeEEE-C
Q 023864 176 DQNNLNKLEEFT-HQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQ--TL-KVI--RKD-IVR-YKGREVRNLNELEFI-K 245 (276)
Q Consensus 176 D~~tlk~i~~~~-~~~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~--t~-~vi--~~I-~V~-~~g~pv~~lNELE~i-d 245 (276)
| +.+...-.. ...+.|..+++||+.||++| ..+.|+++|.+ ++ ++. +.+ ... ..+ .++.+.+. +
T Consensus 167 ~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~----~p~gi~~d~~ 240 (326)
T 2ghs_A 167 A--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKG----GMDGSVCDAE 240 (326)
T ss_dssp E--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSS----EEEEEEECTT
T ss_pred e--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCC----CCCeeEECCC
Confidence 9 443322111 12346777789999999988 57899999975 65 432 111 111 122 33455555 6
Q ss_pred CEEEEEeCCCCCeEEEEeCCCCcE
Q 023864 246 GEVWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 246 G~lyANvw~s~d~I~vIDp~T~~v 269 (276)
|.||+..|.. +.|.++|+ +++.
T Consensus 241 G~lwva~~~~-~~v~~~d~-~g~~ 262 (326)
T 2ghs_A 241 GHIWNARWGE-GAVDRYDT-DGNH 262 (326)
T ss_dssp SCEEEEEETT-TEEEEECT-TCCE
T ss_pred CCEEEEEeCC-CEEEEECC-CCCE
Confidence 8999999999 99999999 4454
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.93 E-value=1.6e-08 Score=87.68 Aligned_cols=154 Identities=14% Similarity=0.154 Sum_probs=104.9
Q ss_pred CCceEEEEecCCEEEEEcCCCC-------------CCeEEEEeCCCCcEEEEeecCCCceEEEEEEe----CC--EEEEE
Q 023864 105 AFTQGLLYAENDTLFESTGLYG-------------RSSVRRVALETGKVEAINQMEGSYFGEGLTLL----GE--KLFQV 165 (276)
Q Consensus 105 aFTQGL~~~~dg~LyeStG~yg-------------~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~----g~--~Lyql 165 (276)
....++.++++|+||.++...+ ...|.++|++ +++..... ....+.|+++. .+ .||+.
T Consensus 117 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~--~~~~~~~i~~~~~~d~dg~~l~v~ 193 (314)
T 1pjx_A 117 QGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT--AFQFPNGIAVRHMNDGRPYQLIVA 193 (314)
T ss_dssp BCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE--EESSEEEEEEEECTTSCEEEEEEE
T ss_pred cCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc--CCCCcceEEEecccCCCCCEEEEE
Confidence 3467999999999999876321 2689999987 77644322 12245788887 43 79999
Q ss_pred EeeCCEEEEEeCC-CCcE--EEEE-ecC-----CCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEee
Q 023864 166 TWLQKTGFIYDQN-NLNK--LEEF-THQ-----MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREV 235 (276)
Q Consensus 166 Twk~~~v~V~D~~-tlk~--i~~~-~~~-----~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv 235 (276)
+..++.+.+||.+ +.+. ...+ .++ .+.|..+.+|| .||+++ +.+.|..+|+++.+.+..+....
T Consensus 194 ~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G-~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~----- 267 (314)
T 1pjx_A 194 ETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN-NLLVANWGSSHIEVFGPDGGQPKMRIRCPF----- 267 (314)
T ss_dssp ETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC-CEEEEEETTTEEEEECTTCBSCSEEEECSS-----
T ss_pred ECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCC-CEEEEEcCCCEEEEEcCCCCcEeEEEeCCC-----
Confidence 9999999999975 3331 1122 121 12333344555 688887 68899999999888777665432
Q ss_pred eeeeeeEEE-CCE-EEEEeCCCCCeEEEEeCCCCc
Q 023864 236 RNLNELEFI-KGE-VWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 236 ~~lNELE~i-dG~-lyANvw~s~d~I~vIDp~T~~ 268 (276)
..+..+.+. ||. ||+..... +.|.++|+++.+
T Consensus 268 ~~~~~i~~~~dg~~l~v~~~~~-~~l~~~~~~~~g 301 (314)
T 1pjx_A 268 EKPSNLHFKPQTKTIFVTEHEN-NAVWKFEWQRNG 301 (314)
T ss_dssp SCEEEEEECTTSSEEEEEETTT-TEEEEEECSSCB
T ss_pred CCceeEEECCCCCEEEEEeCCC-CeEEEEeCCCCC
Confidence 234445553 565 99999887 899999998743
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.92 E-value=7.4e-08 Score=88.29 Aligned_cols=151 Identities=12% Similarity=0.082 Sum_probs=108.6
Q ss_pred eEEEEecC-CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeCCEEEEEeCCCCcEEE
Q 023864 108 QGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLNKLE 184 (276)
Q Consensus 108 QGL~~~~d-g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~~~v~V~D~~tlk~i~ 184 (276)
.||.|++. ++||.+.- +...|.+++++++.....+....-..++|++++ ++.||...+..+.+.++|++......
T Consensus 38 ~~ld~d~~~~~lyw~D~--~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 38 AAVDFVFSHGLIYWSDV--SEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEGGGTEEEEEET--TTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred EEEEEEeCCCEEEEEEC--CCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 48899864 78999854 778999999987642111111112246789987 78999999999999999987643322
Q ss_pred EEec--CCCCeeEEeeCCCEEEEEC-C-CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE--CCEEEEEeCCCCCe
Q 023864 185 EFTH--QMKDGWGLATDGKVLFGSD-G-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGEVWANVWQVWPC 258 (276)
Q Consensus 185 ~~~~--~~~EGWGLT~Dg~~L~vSD-G-S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i--dG~lyANvw~s~d~ 258 (276)
-+.. ..|.|..+.+++..||++| | ..+|+.+|++. +....+ +.. .+..+|.|.+. +++||..-+.. +.
T Consensus 116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~-~~~---~l~~Pnglavd~~~~~lY~aD~~~-~~ 189 (318)
T 3sov_A 116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFII-INS---EIYWPNGLTLDYEEQKLYWADAKL-NF 189 (318)
T ss_dssp EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEE-ECS---SCSCEEEEEEETTTTEEEEEETTT-TE
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEE-EEC---CCCCccEEEEeccCCEEEEEECCC-CE
Confidence 2222 2356666777789999999 6 68999999864 222222 221 25678999987 68999999999 99
Q ss_pred EEEEeCCC
Q 023864 259 IPYAYLQA 266 (276)
Q Consensus 259 I~vIDp~T 266 (276)
|.++|+..
T Consensus 190 I~~~d~dG 197 (318)
T 3sov_A 190 IHKSNLDG 197 (318)
T ss_dssp EEEEETTS
T ss_pred EEEEcCCC
Confidence 99999874
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.3e-07 Score=82.29 Aligned_cols=155 Identities=15% Similarity=0.128 Sum_probs=103.6
Q ss_pred CCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeec-CCC--ceEEEEEEe-CCEEEEEEe-----------
Q 023864 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM-EGS--YFGEGLTLL-GEKLFQVTW----------- 167 (276)
Q Consensus 103 ~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l-~~~--~FgEGit~~-g~~LyqlTw----------- 167 (276)
+.....||++++||+||.++. +...|.+||+++|++...... ... .+..+++++ +++||+.+.
T Consensus 67 ~~~~~~~l~~~~dg~l~v~~~--~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~ 144 (296)
T 3e5z_A 67 PSHHQNGHCLNKQGHLIACSH--GLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGY 144 (296)
T ss_dssp SCSSEEEEEECTTCCEEEEET--TTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSS
T ss_pred CCCCcceeeECCCCcEEEEec--CCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccc
Confidence 345668999999999998765 778999999999987544321 111 123357776 468999643
Q ss_pred ------eCCEEEEEeCCCCcEEEEEecC--CCCeeEEeeCCCEEEEEC-CCceEEEEcCC-CCcE-EEEEEeeeCCEeee
Q 023864 168 ------LQKTGFIYDQNNLNKLEEFTHQ--MKDGWGLATDGKVLFGSD-GSSMLYQIDPQ-TLKV-IRKDIVRYKGREVR 236 (276)
Q Consensus 168 ------k~~~v~V~D~~tlk~i~~~~~~--~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~-t~~v-i~~I~V~~~g~pv~ 236 (276)
..+.++.+|++ .+. ..+... .+.|..+++||+.| ++| +.++|+++|.+ ++++ ...-.... ...
T Consensus 145 ~~~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~~~---~~~ 218 (296)
T 3e5z_A 145 GGEMELPGRWVFRLAPD-GTL-SAPIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHFTV---EPG 218 (296)
T ss_dssp CCCCCSSSCEEEEECTT-SCE-EEEECCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEECC---SSS
T ss_pred cccccCCCcEEEEECCC-CCE-EEeecCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEeeC---CCC
Confidence 24689999987 333 333221 34677788999999 777 68899999986 6665 22111111 112
Q ss_pred eeeeeEEE-CCEEEEEeCCCCCeEEEEeCCCCcE
Q 023864 237 NLNELEFI-KGEVWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 237 ~lNELE~i-dG~lyANvw~s~d~I~vIDp~T~~v 269 (276)
.++-|.+. +|.||+.. . +.|.++||+ |+.
T Consensus 219 ~p~~i~~d~~G~l~v~~--~-~~v~~~~~~-g~~ 248 (296)
T 3e5z_A 219 KTDGLRVDAGGLIWASA--G-DGVHVLTPD-GDE 248 (296)
T ss_dssp CCCSEEEBTTSCEEEEE--T-TEEEEECTT-SCE
T ss_pred CCCeEEECCCCCEEEEc--C-CeEEEECCC-CCE
Confidence 33445554 78999888 6 889999998 454
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.9e-08 Score=93.56 Aligned_cols=151 Identities=11% Similarity=0.075 Sum_probs=107.4
Q ss_pred CceEEEEec--CCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeCC----EEEEEeC
Q 023864 106 FTQGLLYAE--NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQK----TGFIYDQ 177 (276)
Q Consensus 106 FTQGL~~~~--dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~~----~v~V~D~ 177 (276)
..+||+++| ++.||.+.- + ..|+++|++++++......... +.||+++ +++||+.++.++ .++++++
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~--~-~~I~~id~~~~~v~~~~~~~~~--P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~ 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGE--Q-HPTRLIDFEKEYVSTVYSGLSK--VRTICWTHEADSMIITNDQNNNDRPNNYILTR 212 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEB--T-EEEEEEETTTTEEEEEECCCSC--EEEEEECTTSSEEEEEECCSCTTSEEEEEEEG
T ss_pred CCCEEEECCCCCCeEEEEeC--C-CcEEEEECCCCEEEEEecCCCC--cceEEEeCCCCEEEEEeCCCCcccceEEEEeC
Confidence 467999995 488998754 3 8999999999887665543334 5577776 467999999544 5677776
Q ss_pred CC-CcEEEEEe-cCCCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CC-EEEEEe
Q 023864 178 NN-LNKLEEFT-HQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVWANV 252 (276)
Q Consensus 178 ~t-lk~i~~~~-~~~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG-~lyANv 252 (276)
+. +.....+. ...+.|..+++++..||++| +.++|+.+|+++.+......+... ..++-|.+. +| +||+..
T Consensus 213 ~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~----~~P~gia~~pdG~~lyv~d 288 (430)
T 3tc9_A 213 ESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDS----GWEFHIQFHPSGNYAYIVV 288 (430)
T ss_dssp GGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSS----SCCEEEEECTTSSEEEEEE
T ss_pred CCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCC----CcceeEEEcCCCCEEEEEE
Confidence 43 33122222 23468888888778899999 899999999998766433333322 245556665 55 499999
Q ss_pred CCCCCeEEEEeCCC
Q 023864 253 WQVWPCIPYAYLQA 266 (276)
Q Consensus 253 w~s~d~I~vIDp~T 266 (276)
+.. ++|.++|+..
T Consensus 289 ~~~-~~I~~~~~d~ 301 (430)
T 3tc9_A 289 VNQ-HYILRSDYDW 301 (430)
T ss_dssp TTT-TEEEEEEEET
T ss_pred CCC-CEEEEEeCCc
Confidence 999 9999998763
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.91 E-value=2e-09 Score=108.96 Aligned_cols=158 Identities=11% Similarity=-0.014 Sum_probs=110.7
Q ss_pred CceEEEEec-CCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeC-CEEEEEeCCCC-
Q 023864 106 FTQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQ-KTGFIYDQNNL- 180 (276)
Q Consensus 106 FTQGL~~~~-dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~-~~v~V~D~~tl- 180 (276)
...||+++. +++||.+.. +...|.++|++...+...+..+ ...+.||+++ +++||...|.. +++.++|++.-
T Consensus 454 ~P~glavD~~~g~LY~tD~--~~~~I~v~d~dg~~~~~l~~~~-~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~ 530 (699)
T 1n7d_A 454 APDGLAVDWIHSNIYWTDS--VLGTVSVADTKGVKRKTLFREQ-GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 530 (699)
T ss_dssp -CCCEECCCSSSBCEECCT--TTSCEEEEBSSSCCEEEECCCS-SCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC
T ss_pred CcceEEEEeeCCcEEEEec--cCCeEEEEecCCCceEEEEeCC-CCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC
Confidence 357999984 478998744 7889999999876543332222 2234578885 68999999976 89999887532
Q ss_pred -cEEEEEecCCCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCCCCe
Q 023864 181 -NKLEEFTHQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQVWPC 258 (276)
Q Consensus 181 -k~i~~~~~~~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s~d~ 258 (276)
+.+..-....|.|.++++++++||++| +.++|+++|+...... .+ +.. +..+.++.-|.+..++||+..|.. +.
T Consensus 531 ~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~-~~-~~~-~~~~~~P~glavd~~~lywtd~~~-~~ 606 (699)
T 1n7d_A 531 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TI-LED-EKRLAHPFSLAVFEDKVFWTDIIN-EA 606 (699)
T ss_dssp CCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCE-EE-CCC-SSSCSSCCCCEEETTEEEEECSTT-TC
T ss_pred eeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceE-EE-Eec-CCcCCCceEeEEECCEEEEEeCCC-Ce
Confidence 233211223468888999999999999 6889999998753322 22 111 112234555678888999999999 99
Q ss_pred EEEEeCCCCcEE
Q 023864 259 IPYAYLQAFGSS 270 (276)
Q Consensus 259 I~vIDp~T~~v~ 270 (276)
|.+||+.+|+.+
T Consensus 607 V~~~d~~~G~~~ 618 (699)
T 1n7d_A 607 IFSANRLTGSDV 618 (699)
T ss_dssp EEEEETTTEEEE
T ss_pred EEEEEccCCCce
Confidence 999999996543
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.90 E-value=4.7e-08 Score=93.02 Aligned_cols=155 Identities=12% Similarity=0.031 Sum_probs=109.0
Q ss_pred ceEEEEec-CCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeCCEEEEEeCCC--Cc
Q 023864 107 TQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNN--LN 181 (276)
Q Consensus 107 TQGL~~~~-dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~~~v~V~D~~t--lk 181 (276)
..|+++++ +|.||.+.- +..+|.++|++++++.....++...++.||+++ +++||++.+.++++.++|.+. .+
T Consensus 228 p~giavdp~~g~lyv~d~--~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~ 305 (430)
T 3tc9_A 228 CNGAETHPINGELYFNSW--NAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKR 305 (430)
T ss_dssp CCCEEECTTTCCEEEEET--TTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred ceEEEEeCCCCEEEEEEC--CCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCccccc
Confidence 46999999 789998754 788999999998876555556655556688886 456999999999999988653 11
Q ss_pred --EEEEEec--C-------------CCCee-EEeeC---------CCEEEEEC-CCceEEEEcCCCCcEEEEEEeee---
Q 023864 182 --KLEEFTH--Q-------------MKDGW-GLATD---------GKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRY--- 230 (276)
Q Consensus 182 --~i~~~~~--~-------------~~EGW-GLT~D---------g~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~--- 230 (276)
.+..+.- + ..... |++-+ ...||++| +.++|..+|+. +++....-.+.
T Consensus 306 ~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~-G~v~~~~g~g~~~~ 384 (430)
T 3tc9_A 306 LTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQ-GRVTTFAGRGSNGT 384 (430)
T ss_dssp ECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTT-SEEEEEEECCTTSS
T ss_pred ccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECCC-CcEEEEEeCCCCCC
Confidence 1222221 0 01123 45432 25899999 78999999964 65544443311
Q ss_pred ----CCE-----eeeeeeeeEEE--CCEEEEEeCCCCCeEEEEeCC
Q 023864 231 ----KGR-----EVRNLNELEFI--KGEVWANVWQVWPCIPYAYLQ 265 (276)
Q Consensus 231 ----~g~-----pv~~lNELE~i--dG~lyANvw~s~d~I~vIDp~ 265 (276)
+|. .+..+..+.+. +|.||++.+.. ++|.+||++
T Consensus 385 ~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n-~rIr~i~~e 429 (430)
T 3tc9_A 385 SGYNDGDLRQEARFNHPEGIVYDEERECFFIGDREN-RRIRKIGYE 429 (430)
T ss_dssp SSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGG-TEEEEEEEC
T ss_pred CcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCC-CeEEEEccC
Confidence 221 25567888888 58999999999 999999986
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.90 E-value=5.8e-07 Score=78.99 Aligned_cols=163 Identities=13% Similarity=0.097 Sum_probs=111.7
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe-CCEEEEEEeeC-
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQ- 169 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~-g~~LyqlTwk~- 169 (276)
.-+-+..++. ...+.+|+.|++||+||.+.. ....|.+||++++++..... .......+++++ +++||+.+..+
T Consensus 33 ~~~~~~~~~~-~~~~~~~~~~~~~g~l~~~~~--~~~~i~~~d~~~~~~~~~~~-~~~~~~~~i~~~~dg~l~v~~~~~~ 108 (333)
T 2dg1_A 33 TAEPWLEISK-KGLQLEGLNFDRQGQLFLLDV--FEGNIFKINPETKEIKRPFV-SHKANPAAIKIHKDGRLFVCYLGDF 108 (333)
T ss_dssp ECEEEEEEES-SCCCEEEEEECTTSCEEEEET--TTCEEEEECTTTCCEEEEEE-CSSSSEEEEEECTTSCEEEEECTTS
T ss_pred ccceeEEEec-cCccccCcEECCCCCEEEEEC--CCCEEEEEeCCCCcEEEEee-CCCCCcceEEECCCCcEEEEeCCCC
Confidence 4445555554 456779999999999998644 45689999999998765432 222345688886 56899999877
Q ss_pred ---CEEEEEeCCCCcEEEEEec--C--CCCeeEEeeCCCEEEEECC-------CceEEEEcCCCCcEEEEEEeeeCCEee
Q 023864 170 ---KTGFIYDQNNLNKLEEFTH--Q--MKDGWGLATDGKVLFGSDG-------SSMLYQIDPQTLKVIRKDIVRYKGREV 235 (276)
Q Consensus 170 ---~~v~V~D~~tlk~i~~~~~--~--~~EGWGLT~Dg~~L~vSDG-------S~~L~viDp~t~~vi~~I~V~~~g~pv 235 (276)
+.+++||+++.+....+.. . .+.+..+.+||+ +|+++. ...|+.+|+++.++..... ..
T Consensus 109 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------~~ 181 (333)
T 2dg1_A 109 KSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ------NI 181 (333)
T ss_dssp SSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEE------EE
T ss_pred CCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCCCEEEEeec------CC
Confidence 7999999988776433321 1 122334556664 666653 4789999998876543221 12
Q ss_pred eeeeeeEEE-CC-EEEEEeCCCCCeEEEEeCCC
Q 023864 236 RNLNELEFI-KG-EVWANVWQVWPCIPYAYLQA 266 (276)
Q Consensus 236 ~~lNELE~i-dG-~lyANvw~s~d~I~vIDp~T 266 (276)
..+|.+.+. || .||+..... +.|.++|+++
T Consensus 182 ~~~~~i~~~~dg~~l~v~~~~~-~~i~~~d~~~ 213 (333)
T 2dg1_A 182 SVANGIALSTDEKVLWVTETTA-NRLHRIALED 213 (333)
T ss_dssp SSEEEEEECTTSSEEEEEEGGG-TEEEEEEECT
T ss_pred CcccceEECCCCCEEEEEeCCC-CeEEEEEecC
Confidence 345667665 55 599888778 8999999975
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.89 E-value=1e-07 Score=98.30 Aligned_cols=155 Identities=8% Similarity=0.036 Sum_probs=110.4
Q ss_pred CCceEEEEec-CCEEEEEcCCCCCCeEEEEeCCCCcE--EEEeecC-CCceEEEEEEe--CCEEEEEEeeCCEEEEEeCC
Q 023864 105 AFTQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKV--EAINQME-GSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQN 178 (276)
Q Consensus 105 aFTQGL~~~~-dg~LyeStG~yg~S~I~~iDl~tgkv--~~~~~l~-~~~FgEGit~~--g~~LyqlTwk~~~v~V~D~~ 178 (276)
....||.|+. +++||.+.. +...|++++++.... .....+. .-..++||+++ +++||...+..+++.++|++
T Consensus 424 ~~~~gl~~d~~~~~lY~sD~--~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 424 RNVVALDTEVASNRIYWSDL--SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp SSEEEEEEETTTTEEEEEET--TTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CceEEEeecccCCeeEEeec--cceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence 4457999997 478999865 778999999986321 1111222 22346688887 67999999999999999998
Q ss_pred CCcEEEEEec--CCCCeeEEeeCCCEEEEEC-CC-ceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE--CCEEEEEe
Q 023864 179 NLNKLEEFTH--QMKDGWGLATDGKVLFGSD-GS-SMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGEVWANV 252 (276)
Q Consensus 179 tlk~i~~~~~--~~~EGWGLT~Dg~~L~vSD-GS-~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i--dG~lyANv 252 (276)
......-+.. ..|.|.++.+.+.+||++| |. .+|.++|++.......+.. .+..+|-|.+. +|+||+.-
T Consensus 502 G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~-----~l~~P~GLavD~~~~~LYwaD 576 (791)
T 3m0c_C 502 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE-----NIQWPNGITLDLLSGRLYWVD 576 (791)
T ss_dssp SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS-----SCSCEEEEEEETTTTEEEEEE
T ss_pred CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeC-----CCCCceEEEEecCCCeEEEEe
Confidence 6554333332 2467777888899999999 75 8999999875443322221 24577888877 78999999
Q ss_pred CCCCCeEEEEeCCCC
Q 023864 253 WQVWPCIPYAYLQAF 267 (276)
Q Consensus 253 w~s~d~I~vIDp~T~ 267 (276)
+.. +.|.++|+...
T Consensus 577 ~~~-~~I~~~d~dG~ 590 (791)
T 3m0c_C 577 SKL-HSISSIDVNGG 590 (791)
T ss_dssp TTT-TEEEEEETTSC
T ss_pred CCC-CcEEEEecCCC
Confidence 999 99999999653
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=98.89 E-value=9.3e-08 Score=86.56 Aligned_cols=167 Identities=8% Similarity=0.018 Sum_probs=105.1
Q ss_pred eEEEEEEecCCCCCceEEEEecCCE-EEEEcCCCCCCeEEEEeCC-CCcEEEEee--cCCCceEEEEEEe--CCEEEE--
Q 023864 93 IQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALE-TGKVEAINQ--MEGSYFGEGLTLL--GEKLFQ-- 164 (276)
Q Consensus 93 ~~Vv~~~Phd~~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~-tgkv~~~~~--l~~~~FgEGit~~--g~~Lyq-- 164 (276)
.+.+...+.....-..++.|++||+ ||.+.. + .|..||++ +|++..... .+..+. ++++. |++||+
T Consensus 28 l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~--~--~v~~~~~~~~g~~~~~~~~~~~g~~~--~~~~spdg~~l~~~~ 101 (365)
T 1jof_A 28 CKLIKRTEIPQDEPISWMTFDHERKNIYGAAM--K--KWSSFAVKSPTEIVHEASHPIGGHPR--ANDADTNTRAIFLLA 101 (365)
T ss_dssp EEEEEEEECCTTCCCSEEEECTTSSEEEEEEB--T--EEEEEEEEETTEEEEEEEEECCSSGG--GGCTTSCCEEEEEEE
T ss_pred EEEeeEEccCCCCCCcEEEECCCCCEEEEEcc--c--eEEEEEECCCCCEEEeeEeecCCCCc--cEEECCCCCEEEEEE
Confidence 3455555433233456899999986 775432 4 89999997 888754432 222222 24443 444444
Q ss_pred EE------e------eCCEEEEEeCC-CCcEEEEEe---cC---CCCeeEEeeCCCEEEEEC-CCceEEEEcCC-CCcEE
Q 023864 165 VT------W------LQKTGFIYDQN-NLNKLEEFT---HQ---MKDGWGLATDGKVLFGSD-GSSMLYQIDPQ-TLKVI 223 (276)
Q Consensus 165 lT------w------k~~~v~V~D~~-tlk~i~~~~---~~---~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~-t~~vi 223 (276)
.+ + .++.+.+||.+ +.+...++. ++ .+.+..+++||++||++| |.++|+++|.+ +++..
T Consensus 102 ~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~ 181 (365)
T 1jof_A 102 AKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVE 181 (365)
T ss_dssp CSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEE
T ss_pred ecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEE
Confidence 32 2 57889999986 456554443 11 345666889999999998 78999999988 77654
Q ss_pred --EEEEeeeCCEeeeeeeeeEEE-CC-EEEEEeCCCCCeEEEE--eCCCCcE
Q 023864 224 --RKDIVRYKGREVRNLNELEFI-KG-EVWANVWQVWPCIPYA--YLQAFGS 269 (276)
Q Consensus 224 --~~I~V~~~g~pv~~lNELE~i-dG-~lyANvw~s~d~I~vI--Dp~T~~v 269 (276)
..+.+...|. .+..+.+. || +||+....+ +.|.++ |+++|+.
T Consensus 182 ~~~~~~~~~~g~---~p~~~~~spdg~~l~v~~~~~-~~v~v~~~~~~~g~~ 229 (365)
T 1jof_A 182 LVGSVDAPDPGD---HPRWVAMHPTGNYLYALMEAG-NRICEYVIDPATHMP 229 (365)
T ss_dssp EEEEEECSSTTC---CEEEEEECTTSSEEEEEETTT-TEEEEEEECTTTCCE
T ss_pred EeeeEecCCCCC---CCCEeEECCCCCEEEEEECCC-CeEEEEEEeCCCCcE
Confidence 2333211121 23445565 56 699998888 888886 5567764
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.88 E-value=7.9e-07 Score=80.38 Aligned_cols=172 Identities=10% Similarity=0.156 Sum_probs=117.8
Q ss_pred eeeEEE-EEEecCCCCCceEEEEecC-CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEEEEEe
Q 023864 91 YTIQVV-NEFPHDPRAFTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTW 167 (276)
Q Consensus 91 ~t~~Vv-~~~Phd~~aFTQGL~~~~d-g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~LyqlTw 167 (276)
|.+.+. +.+|--... ..||+++++ ++||..+. +...|.++|+. |+++++++++...=.|||++.+ +++|++..
T Consensus 13 y~~~~~~~~l~g~~~~-lSGla~~~~~~~L~aV~d--~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E 88 (255)
T 3qqz_A 13 YHATIDGKEIAGITNN-ISSLTWSAQSNTLFSTIN--KPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDE 88 (255)
T ss_dssp CEEEEEEEECTTCCSC-EEEEEEETTTTEEEEEEE--TTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEET
T ss_pred eEEEEeceECCCcccC-cceeEEeCCCCEEEEEEC--CCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEEC
Confidence 444444 344433334 479999986 68998666 68899999998 9999999987533379999986 56667778
Q ss_pred eCCEEEEEeCCCCc---EEEEEecC---CC-----CeeEEeeCCCEEEEEC-CCc-eEEEEc--CCC--CcEEEEEEeee
Q 023864 168 LQKTGFIYDQNNLN---KLEEFTHQ---MK-----DGWGLATDGKVLFGSD-GSS-MLYQID--PQT--LKVIRKDIVRY 230 (276)
Q Consensus 168 k~~~v~V~D~~tlk---~i~~~~~~---~~-----EGWGLT~Dg~~L~vSD-GS~-~L~viD--p~t--~~vi~~I~V~~ 230 (276)
+++++++|+..... .+.++..+ .+ ||.+..+++++||++. .+. .|+.+| +.+ +++...-.. .
T Consensus 89 ~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~-~ 167 (255)
T 3qqz_A 89 RDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKAL-Q 167 (255)
T ss_dssp TTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHH-H
T ss_pred CCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhh-c
Confidence 88999999865433 34555432 23 8888888999999977 344 788888 222 222110000 0
Q ss_pred CCEeeeeeeeeEEE--CCEEEEEeCCCCCeEEEEeCCCCcE
Q 023864 231 KGREVRNLNELEFI--KGEVWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 231 ~g~pv~~lNELE~i--dG~lyANvw~s~d~I~vIDp~T~~v 269 (276)
+...+..+-.|.+. .|++|+-.-.+ +.++++|++. ++
T Consensus 168 ~~~~~~d~S~l~~dp~tg~lliLS~~s-~~L~~~d~~g-~~ 206 (255)
T 3qqz_A 168 RQFTLDDVSGAEFNQQKNTLLVLSHES-RALQEVTLVG-EV 206 (255)
T ss_dssp HTCCSSCCCEEEEETTTTEEEEEETTT-TEEEEECTTC-CE
T ss_pred cccccCCceeEEEcCCCCeEEEEECCC-CeEEEEcCCC-CE
Confidence 12233445556666 57899999889 9999999885 53
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.1e-07 Score=95.12 Aligned_cols=154 Identities=8% Similarity=0.031 Sum_probs=107.8
Q ss_pred CCceEEEEec-CCEEEEEcCCCCCCeEEEEeCCCCcE--EEEeecCCCceEEEEEEe--CCEEEEEEee-CCEEEEEeCC
Q 023864 105 AFTQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKV--EAINQMEGSYFGEGLTLL--GEKLFQVTWL-QKTGFIYDQN 178 (276)
Q Consensus 105 aFTQGL~~~~-dg~LyeStG~yg~S~I~~iDl~tgkv--~~~~~l~~~~FgEGit~~--g~~LyqlTwk-~~~v~V~D~~ 178 (276)
...+||+++. +++||.+.. +...|.++|++.... +....+ ..|. ||+++ ++.||..+|. ..++...+.+
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~--~~~~I~v~~~dG~~~~~l~~~~l-~~P~--~Iavdp~~g~ly~tD~g~~~~I~r~~~d 158 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDS--ETNRIEVSNLDGSLRKVLFWQEL-DQPR--AIALDPSSGFMYWTDWGEVPKIERAGMD 158 (619)
T ss_dssp SCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEECSSC-SCCC--CEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred CCcCeEEEEecCCEEEEEeC--CCCEEEEEECCCCCEEEEEeCCC-CCCc--eEEEecCCCeEEEeccCCCCEEEEEECC
Confidence 4578999997 478998754 889999999986532 221122 2444 77885 5899999997 5789999876
Q ss_pred CCc--EEEEEecCCCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCC
Q 023864 179 NLN--KLEEFTHQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQV 255 (276)
Q Consensus 179 tlk--~i~~~~~~~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s 255 (276)
.-. .+..-....|.|.++.++++.||++| +.++|+.+|.+..... .+.-+. ..++.-|.+.+++||+..|.+
T Consensus 159 G~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~-~~~~~~----~~~P~gi~~~~~~ly~td~~~ 233 (619)
T 3s94_A 159 GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ-AVVKGS----LPHPFALTLFEDILYWTDWST 233 (619)
T ss_dssp SCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC--------------CCCEEESSSEEEEECTTT
T ss_pred CCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccE-EEEeCC----CCCceEEEEeCCEEEEecCCC
Confidence 432 22211222456777778899999999 6899999999764332 221111 235556778888999999999
Q ss_pred CCeEEEEeCCCCcE
Q 023864 256 WPCIPYAYLQAFGS 269 (276)
Q Consensus 256 ~d~I~vIDp~T~~v 269 (276)
+.|.+||..||+.
T Consensus 234 -~~V~~~d~~tg~~ 246 (619)
T 3s94_A 234 -HSILACNKYTGEG 246 (619)
T ss_dssp -CSEEEEESSSCCC
T ss_pred -CEEEEEECCCCcc
Confidence 9999999999764
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=98.80 E-value=9.4e-08 Score=85.22 Aligned_cols=120 Identities=13% Similarity=0.140 Sum_probs=87.0
Q ss_pred CCCceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeec---CC-CceEEEEEEe--CCEEEEEEee-CCEEEEE
Q 023864 104 RAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQM---EG-SYFGEGLTLL--GEKLFQVTWL-QKTGFIY 175 (276)
Q Consensus 104 ~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l---~~-~~FgEGit~~--g~~LyqlTwk-~~~v~V~ 175 (276)
.....++.|+|||+ ||.+.. +.+.|.+||+++|++.....+ +. .....++++. ++.||+.+.. ++.+.+|
T Consensus 210 ~~~~~~~~~spdg~~l~v~~~--~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~ 287 (361)
T 3scy_A 210 GSGPRHLIFNSDGKFAYLINE--IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIF 287 (361)
T ss_dssp TCCEEEEEECTTSSEEEEEET--TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEE
T ss_pred CCCCeEEEEcCCCCEEEEEcC--CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEE
Confidence 44456999999985 787643 678899999999876443322 21 1223466664 5689999988 8999998
Q ss_pred eCC----CCcEEEEEecC-CCCeeEEeeCCCEEEEEC-CCceEEE--EcCCCCcEEEE
Q 023864 176 DQN----NLNKLEEFTHQ-MKDGWGLATDGKVLFGSD-GSSMLYQ--IDPQTLKVIRK 225 (276)
Q Consensus 176 D~~----tlk~i~~~~~~-~~EGWGLT~Dg~~L~vSD-GS~~L~v--iDp~t~~vi~~ 225 (276)
|.+ +++.+..++.+ .+.+..+++||++||+++ .++.|.+ +|++++++...
T Consensus 288 ~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 288 KVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp EECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEEC
T ss_pred EEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeec
Confidence 874 44577777653 356777899999999988 5777777 89999887543
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.4e-07 Score=89.95 Aligned_cols=148 Identities=12% Similarity=0.135 Sum_probs=103.3
Q ss_pred CceEEEEecC---CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEEEEEeeC---CE-EEEEeC
Q 023864 106 FTQGLLYAEN---DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQ---KT-GFIYDQ 177 (276)
Q Consensus 106 FTQGL~~~~d---g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~LyqlTwk~---~~-v~V~D~ 177 (276)
..+||+++++ |.||.+.. + ..|+++|+++|++..... ....+.|++++. ++||+..+.+ .. ++.++.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~--~-~~I~~id~~~g~v~~~~~--~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~ 214 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQ--R-DAFRHVDFVNQYVDIKTT--NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTR 214 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECB--T-SCEEEEETTTTEEEEECC--CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECG
T ss_pred CCceEEEccccCCCEEEEEeC--C-CCEEEEECCCCEEEEeec--CCCCccEEEECCCCCEEEEcCCCCcccceEEEEEC
Confidence 3579999974 89999755 4 899999999998865543 333466888863 4599999843 23 455554
Q ss_pred CC-Cc---EEEEEecCCCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEE-EeeeCCEeeeeeeeeEEE-CC-EEE
Q 023864 178 NN-LN---KLEEFTHQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKD-IVRYKGREVRNLNELEFI-KG-EVW 249 (276)
Q Consensus 178 ~t-lk---~i~~~~~~~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I-~V~~~g~pv~~lNELE~i-dG-~ly 249 (276)
.. +. .+..+ ..+.|..+.+++..||++| +.++|+.+|++++++...+ .++..+ ..+-|.+. +| +||
T Consensus 215 ~~~~~~~~~~~~~--~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~----~~~~ia~dpdG~~LY 288 (433)
T 4hw6_A 215 ASGFTERLSLCNA--RGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKG----SNFHIVWHPTGDWAY 288 (433)
T ss_dssp GGTTCCEEEEEEC--SSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCS----SCEEEEECTTSSEEE
T ss_pred CCCeecccccccc--CCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCC----CcccEEEeCCCCEEE
Confidence 32 22 22222 2457888888778999999 7889999999988874433 333211 12235565 45 699
Q ss_pred EEeCCCCCeEEEEeCC
Q 023864 250 ANVWQVWPCIPYAYLQ 265 (276)
Q Consensus 250 ANvw~s~d~I~vIDp~ 265 (276)
+..+.. ++|.+||+.
T Consensus 289 vad~~~-~~I~~~~~d 303 (433)
T 4hw6_A 289 IIYNGK-HCIYRVDYN 303 (433)
T ss_dssp EEETTT-TEEEEEEBC
T ss_pred EEeCCC-CEEEEEeCC
Confidence 999999 999999865
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=98.75 E-value=2e-06 Score=73.85 Aligned_cols=165 Identities=11% Similarity=-0.002 Sum_probs=114.8
Q ss_pred EEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEEEEEeeCCEEE
Q 023864 95 VVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGF 173 (276)
Q Consensus 95 Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~LyqlTwk~~~v~ 173 (276)
.+..+.. .......+.|++++.++.+++ .+..|+.||+++++......-... -...+++.. ++.+...-.++.+.
T Consensus 133 ~~~~~~~-~~~~i~~~~~~~~~~~l~~~~--~dg~v~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~ 208 (337)
T 1gxr_A 133 IKAELTS-SAPACYALAISPDSKVCFSCC--SDGNIAVWDLHNQTLVRQFQGHTD-GASCIDISNDGTKLWTGGLDNTVR 208 (337)
T ss_dssp EEEEEEC-SSSCEEEEEECTTSSEEEEEE--TTSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSEEE
T ss_pred eeeeccc-CCCceEEEEECCCCCEEEEEe--CCCcEEEEeCCCCceeeeeecccC-ceEEEEECCCCCEEEEEecCCcEE
Confidence 3444443 344457999999887666555 567899999999998777654332 234566653 44455555789999
Q ss_pred EEeCCCCcEEEEEecC-CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEE
Q 023864 174 IYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWAN 251 (276)
Q Consensus 174 V~D~~tlk~i~~~~~~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyAN 251 (276)
+||..+.+.+..+..+ ......+++||+.|+++.....|.++|..+.+... ...... .++.+.+. +|..++.
T Consensus 209 ~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~---~~~~~~---~v~~~~~~~~~~~l~~ 282 (337)
T 1gxr_A 209 SWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ---LHLHES---CVLSLKFAYCGKWFVS 282 (337)
T ss_dssp EEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE---ECCCSS---CEEEEEECTTSSEEEE
T ss_pred EEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE---EcCCcc---ceeEEEECCCCCEEEE
Confidence 9999999999998765 12334467899999998878899999999887542 222122 34455666 5655555
Q ss_pred eCCCCCeEEEEeCCCCcEE
Q 023864 252 VWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 252 vw~s~d~I~vIDp~T~~v~ 270 (276)
.-.+ ..|.+.|.++++..
T Consensus 283 ~~~d-g~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 283 TGKD-NLLNAWRTPYGASI 300 (337)
T ss_dssp EETT-SEEEEEETTTCCEE
T ss_pred ecCC-CcEEEEECCCCeEE
Confidence 5566 89999999997765
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.75 E-value=2.8e-06 Score=74.94 Aligned_cols=151 Identities=13% Similarity=0.013 Sum_probs=104.3
Q ss_pred CCCCCceEEEEecC-CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe-CCEEEEEEeeCCEEEEEeCCC
Q 023864 102 DPRAFTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNN 179 (276)
Q Consensus 102 d~~aFTQGL~~~~d-g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~-g~~LyqlTwk~~~v~V~D~~t 179 (276)
....|.+|..|+++ +.||.+.- ....|++||++++++ ....++.. ..+++++ +++||+.+ ++.+++||+++
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~--~~~~i~~~d~~~~~~-~~~~~~~~--~~~i~~~~dG~l~v~~--~~~l~~~d~~~ 82 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDI--PAKKVCRWDSFTKQV-QRVTMDAP--VSSVALRQSGGYVATI--GTKFCALNWKE 82 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEET--TTTEEEEEETTTCCE-EEEECSSC--EEEEEEBTTSSEEEEE--TTEEEEEETTT
T ss_pred cCCccccCCeEECCCCEEEEEEC--CCCEEEEEECCCCcE-EEEeCCCc--eEEEEECCCCCEEEEE--CCeEEEEECCC
Confidence 46789999999985 78888754 678999999999987 44556655 4467776 45688887 78999999987
Q ss_pred CcEEEEEecC------CCCeeEEeeCCCEEEEEC------------CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeee
Q 023864 180 LNKLEEFTHQ------MKDGWGLATDGKVLFGSD------------GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNEL 241 (276)
Q Consensus 180 lk~i~~~~~~------~~EGWGLT~Dg~~L~vSD------------GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNEL 241 (276)
.+...-.... .+.+..+.+||+ +|+++ ....|+.+|+. .++..... .+...|.+
T Consensus 83 g~~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~------~~~~pngi 154 (297)
T 3g4e_A 83 QSAVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFD------QVDISNGL 154 (297)
T ss_dssp TEEEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEE------EESBEEEE
T ss_pred CcEEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECC-CCEEEEee------ccccccce
Confidence 6543222211 012234567777 77765 24589999986 44433211 23467888
Q ss_pred EEE-CC-EEEEEeCCCCCeEEEEeC--CCCc
Q 023864 242 EFI-KG-EVWANVWQVWPCIPYAYL--QAFG 268 (276)
Q Consensus 242 E~i-dG-~lyANvw~s~d~I~vIDp--~T~~ 268 (276)
.+. || .||+..-.. +.|.++|. ++|.
T Consensus 155 ~~spdg~~lyv~~~~~-~~i~~~~~d~~~G~ 184 (297)
T 3g4e_A 155 DWSLDHKIFYYIDSLS-YSVDAFDYDLQTGQ 184 (297)
T ss_dssp EECTTSCEEEEEEGGG-TEEEEEEECTTTCC
T ss_pred EEcCCCCEEEEecCCC-CcEEEEeccCCCCc
Confidence 886 45 599888788 99999975 6664
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.2e-06 Score=87.70 Aligned_cols=154 Identities=8% Similarity=-0.087 Sum_probs=110.5
Q ss_pred CceEEEEecC-CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeCC--EEEEEeCCCC
Q 023864 106 FTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQK--TGFIYDQNNL 180 (276)
Q Consensus 106 FTQGL~~~~d-g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~~--~v~V~D~~tl 180 (276)
..+||+++.. +.||.+.. +.+.|.+.+++ |+....+....-.-+-||+++ ++.||...|..+ ++...+++.-
T Consensus 390 ~p~glAvD~~~~nLY~td~--~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~ 466 (628)
T 4a0p_A 390 QPYDLSIDIYSRYIYWTCE--ATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGT 466 (628)
T ss_dssp CEEEEEEETTTTEEEEEET--TTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSC
T ss_pred CcceEEeeccCCeEEEEcC--CCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCC
Confidence 4579999976 67998754 88899999996 655444322222336789998 589999999987 7899888644
Q ss_pred cEEEEEe--cCCCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCCCC
Q 023864 181 NKLEEFT--HQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQVWP 257 (276)
Q Consensus 181 k~i~~~~--~~~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s~d 257 (276)
....-+. ...|.|..+.++++.||++| +.+.|..+|.+. +-.+.+.-.. ..++--|...+|+||..-|.. +
T Consensus 467 ~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG-~~r~~~~~~~----~~~P~glav~~~~ly~tD~~~-~ 540 (628)
T 4a0p_A 467 EREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSG-ANRIVLEDSN----ILQPVGLTVFENWLYWIDKQQ-Q 540 (628)
T ss_dssp SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECSS----CSCEEEEEEETTEEEEEETTT-T
T ss_pred CcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCC-CceEEEEcCC----CCCcEEEEEECCEEEEEECCC-C
Confidence 3322222 22345666667789999999 689999999854 3333332222 234455778899999999999 9
Q ss_pred eEEEEeCCCCc
Q 023864 258 CIPYAYLQAFG 268 (276)
Q Consensus 258 ~I~vIDp~T~~ 268 (276)
.|.++|..||+
T Consensus 541 ~i~~~~k~~G~ 551 (628)
T 4a0p_A 541 MIEKIDMTGRE 551 (628)
T ss_dssp EEEEEETTSSS
T ss_pred eEEEEECcCCC
Confidence 99999999876
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.7e-07 Score=92.43 Aligned_cols=150 Identities=9% Similarity=0.110 Sum_probs=107.1
Q ss_pred ceEEEEec--CCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCce--EEEEEE---------eCCEEEEEEeeCC---
Q 023864 107 TQGLLYAE--NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYF--GEGLTL---------LGEKLFQVTWLQK--- 170 (276)
Q Consensus 107 TQGL~~~~--dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~F--gEGit~---------~g~~LyqlTwk~~--- 170 (276)
..||+|+| +++||.+-. +...|+++|++++++......+...| +-+|++ .+++||+.+|.++
T Consensus 141 p~~la~dp~~~~~Lyv~~~--~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYD--GHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp EEEEEEETTEEEEEEEEEE--TEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred CCEEEEccCCCCEEEEEEC--CCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence 45999997 378998755 56789999999999877666654222 445655 5678999999973
Q ss_pred ---EEEEEeCCC---C------cEEEEEecCCCCeeEEeeCCCEEEEEC-CCceEEEEcCC-------CCcE--------
Q 023864 171 ---TGFIYDQNN---L------NKLEEFTHQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQ-------TLKV-------- 222 (276)
Q Consensus 171 ---~v~V~D~~t---l------k~i~~~~~~~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~-------t~~v-------- 222 (276)
.++++|++. + +.+.++. .+.|..+.+++++||++| +.++|+.+|++ +.++
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~~--~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~ 296 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAYK--QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN 296 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEES--CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred cCceEEEEecCCCCceeecccceeeccCC--CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence 488898655 3 2344333 457888888899999999 78899999998 6654
Q ss_pred ---EEE-EEeeeCCEeeeeeeeeEEE-CC-EEEEEeCCCCCeEEEEeCC
Q 023864 223 ---IRK-DIVRYKGREVRNLNELEFI-KG-EVWANVWQVWPCIPYAYLQ 265 (276)
Q Consensus 223 ---i~~-I~V~~~g~pv~~lNELE~i-dG-~lyANvw~s~d~I~vIDp~ 265 (276)
.+. ..+...+.| .-|.+. +| .||+.-+.. ++|.+||+.
T Consensus 297 ~g~~~~l~~~~~~~~p----~~ia~~p~G~~lYvaD~~~-h~I~kid~d 340 (496)
T 3kya_A 297 PNTFKQLFTIADPSWE----FQIFIHPTGKYAYFGVINN-HYFMRSDYD 340 (496)
T ss_dssp TTTEEEEEECSSSSCC----EEEEECTTSSEEEEEETTT-TEEEEEEEE
T ss_pred ccccceeEecCCCCCc----eEEEEcCCCCEEEEEeCCC-CEEEEEecC
Confidence 233 344433333 234454 45 599999999 999997763
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.73 E-value=4.9e-07 Score=79.96 Aligned_cols=158 Identities=11% Similarity=0.069 Sum_probs=101.5
Q ss_pred CCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEee-cCCC--ceEEEEEEe-CCEEEEEE-----e------
Q 023864 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQ-MEGS--YFGEGLTLL-GEKLFQVT-----W------ 167 (276)
Q Consensus 103 ~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~-l~~~--~FgEGit~~-g~~LyqlT-----w------ 167 (276)
+..+..|+.+++||+||.++. +...|.++|++ |++..... .+.. .....++++ ++++|..+ .
T Consensus 84 ~~~~~~gl~~d~dG~l~v~~~--~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~ 160 (305)
T 3dr2_A 84 ATAFTNGNAVDAQQRLVHCEH--GRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGC 160 (305)
T ss_dssp SCSCEEEEEECTTSCEEEEET--TTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSC
T ss_pred CCCccceeeECCCCCEEEEEC--CCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCcccccccc
Confidence 356678999999999998754 77899999997 76543321 1111 112356776 47899853 1
Q ss_pred ------eCCEEEEEeCCCCcEEEEEecCCCCeeEEeeCCCEEEEECCC------ceEEEEcCCCCcEEEEEEeeeCCEee
Q 023864 168 ------LQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGS------SMLYQIDPQTLKVIRKDIVRYKGREV 235 (276)
Q Consensus 168 ------k~~~v~V~D~~tlk~i~~~~~~~~EGWGLT~Dg~~L~vSDGS------~~L~viDp~t~~vi~~I~V~~~g~pv 235 (276)
..+.++.+|+++.+...-.....+.|..+++||+.||++|.. +.|+++|.++.. +....+-... +-
T Consensus 161 ~~~~~~~~~~v~~~d~~~g~~~~~~~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~-~~ 238 (305)
T 3dr2_A 161 PADPELAHHSVYRLPPDGSPLQRMADLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASV-PD 238 (305)
T ss_dssp CCCCSSSCEEEEEECSSSCCCEEEEEESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECC-SS
T ss_pred ccccccCCCeEEEEcCCCCcEEEEecCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEEC-CC
Confidence 136899999976554322133345788889999999999853 799999987654 2222221100 11
Q ss_pred eeeeeeEEE-CCEEEEEeCCCCCeEEEEeCCCCcE
Q 023864 236 RNLNELEFI-KGEVWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 236 ~~lNELE~i-dG~lyANvw~s~d~I~vIDp~T~~v 269 (276)
..++-|.+. +|.||+..+ +.|.++||+ |+.
T Consensus 239 ~~pdgi~~d~~G~lwv~~~---~gv~~~~~~-g~~ 269 (305)
T 3dr2_A 239 GLPDGFCVDRGGWLWSSSG---TGVCVFDSD-GQL 269 (305)
T ss_dssp SCCCSEEECTTSCEEECCS---SEEEEECTT-SCE
T ss_pred CCCCeEEECCCCCEEEecC---CcEEEECCC-CCE
Confidence 123445554 688998873 679999995 354
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.8e-06 Score=86.27 Aligned_cols=156 Identities=12% Similarity=0.088 Sum_probs=109.8
Q ss_pred CCceEEEEec-CCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeC-CEEEEEeCCCC
Q 023864 105 AFTQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQ-KTGFIYDQNNL 180 (276)
Q Consensus 105 aFTQGL~~~~-dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~-~~v~V~D~~tl 180 (276)
...+||+++. ++.||.+.. +...|.+.+++.... ..+.-..-.-+.||+++ ++.||...|.+ .++...+.+.-
T Consensus 392 ~~p~GlAvD~~~~~lY~tD~--~~~~I~v~~~~G~~~-~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~ 468 (619)
T 3s94_A 392 AHPDGIAVDWVARNLYWTDT--GTDRIEVTRLNGTMR-KILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGS 468 (619)
T ss_dssp SCCCEEEEETTTTEEEEEET--TTTEEEEEETTSCSC-EEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCcCceEEecccCcEEEEeC--CCCcEEEEeCCCCeE-EEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCC
Confidence 3557999995 578999855 889999999986532 22211122346788998 58999999976 78988887543
Q ss_pred c--EEEEEecCCCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCCCC
Q 023864 181 N--KLEEFTHQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQVWP 257 (276)
Q Consensus 181 k--~i~~~~~~~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s~d 257 (276)
. .+..-....|.|.++.+++++||++| +.++|..+|++... .+.+.-.. +.++--|...+++||..-|.. +
T Consensus 469 ~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~-~~~~~~~~----l~~P~glav~~~~ly~tD~~~-~ 542 (619)
T 3s94_A 469 DRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTG-RRVLVEDK----IPHIFGFTLLGDYVYWTDWQR-R 542 (619)
T ss_dssp SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCC-CEEEEECC----CCSSCCEEEETTEEEEECTTS-S
T ss_pred ccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCc-eEEEeccC----CCCcEEEEEECCEEEEeecCC-C
Confidence 2 22211122456777778899999999 68899999986433 33332221 223445678899999999999 9
Q ss_pred eEEEEeCCCCcE
Q 023864 258 CIPYAYLQAFGS 269 (276)
Q Consensus 258 ~I~vIDp~T~~v 269 (276)
.|.++|..||..
T Consensus 543 ~I~~~~k~~g~~ 554 (619)
T 3s94_A 543 SIERVHKRSAER 554 (619)
T ss_dssp CEEEEESSSCCE
T ss_pred eEEEEEcCCCce
Confidence 999999999854
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=98.72 E-value=1.6e-06 Score=76.95 Aligned_cols=160 Identities=14% Similarity=0.093 Sum_probs=113.0
Q ss_pred CCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeec-------CCCceEEEEEEeC-CEEEEEEeeC---CE
Q 023864 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM-------EGSYFGEGLTLLG-EKLFQVTWLQ---KT 171 (276)
Q Consensus 103 ~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l-------~~~~FgEGit~~g-~~LyqlTwk~---~~ 171 (276)
.......+.|++++ ++.+++ .+..|+.||+.+++.+..... ... -..+++.. ++++...-.+ +.
T Consensus 185 ~~~~i~~~~~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~--i~~i~~~~~~~~l~~~~~d~~~g~ 259 (397)
T 1sq9_A 185 PSQFATSVDISERG-LIATGF--NNGTVQISELSTLRPLYNFESQHSMINNSNS--IRSVKFSPQGSLLAIAHDSNSFGC 259 (397)
T ss_dssp SCCCCCEEEECTTS-EEEEEC--TTSEEEEEETTTTEEEEEEECCC---CCCCC--EEEEEECSSTTEEEEEEEETTEEE
T ss_pred CCCCceEEEECCCc-eEEEEe--CCCcEEEEECCCCceeEEEeccccccccCCc--cceEEECCCCCEEEEEecCCCCce
Confidence 35556799999999 766655 678899999999998888775 333 34566642 3444444455 89
Q ss_pred EEEEeCCCCcEEEEEec-------------CCCC--eeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeC--CE-
Q 023864 172 GFIYDQNNLNKLEEFTH-------------QMKD--GWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYK--GR- 233 (276)
Q Consensus 172 v~V~D~~tlk~i~~~~~-------------~~~E--GWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~--g~- 233 (276)
+.+||..+.+.+.++.. .... ...+++||+.|+....+..|.++|..+++.+.++..... ++
T Consensus 260 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 339 (397)
T 1sq9_A 260 ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIE 339 (397)
T ss_dssp EEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSG
T ss_pred EEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccch
Confidence 99999999999998874 2122 233567899998887888999999999999988873210 00
Q ss_pred -------e------eeeeeeeEEEC-C----------EEEEEeCCCCCeEEEEeCCCCc
Q 023864 234 -------E------VRNLNELEFIK-G----------EVWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 234 -------p------v~~lNELE~id-G----------~lyANvw~s~d~I~vIDp~T~~ 268 (276)
. -..++.+.+.. | .+++..-.+ ..|.+.|.++|+
T Consensus 340 ~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~d-g~i~iw~~~~g~ 397 (397)
T 1sq9_A 340 EDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLD-RSIRWFREAGGK 397 (397)
T ss_dssp GGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETT-TEEEEEEEEC--
T ss_pred hhhhccccccccccCCceeEEEeccccccccccccccceEEEecCC-CcEEEEEcCCCC
Confidence 0 23466677774 3 566666566 899999988863
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=5.4e-06 Score=75.67 Aligned_cols=170 Identities=9% Similarity=0.045 Sum_probs=119.2
Q ss_pred ceeeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC-----------------Cce
Q 023864 89 SIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG-----------------SYF 151 (276)
Q Consensus 89 ~~~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~-----------------~~F 151 (276)
.....++.+.+.|. ..+..+.|+|||+++.+ | .+..+++||..+|+.+....-.. ..+
T Consensus 51 ~~~~~~~~~~~~h~--~~V~~v~fspdg~~la~-g--~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 125 (393)
T 1erj_A 51 REIDVELHKSLDHT--SVVCCVKFSNDGEYLAT-G--CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY 125 (393)
T ss_dssp CCEEEEEEEEEECS--SCCCEEEECTTSSEEEE-E--CBSCEEEEETTTCCEEEEECC-----------------CCCCB
T ss_pred cccCceeEEecCCC--CEEEEEEECCCCCEEEE-E--cCCcEEEEEecCCCEEEEecCccccccccccccccccCCCcee
Confidence 34566778888884 44569999999987664 4 34689999999999876653221 112
Q ss_pred EEEEEEe-CCEEEEEEeeCCEEEEEeCCCCcEEEEEecCCCCe--eEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEe
Q 023864 152 GEGLTLL-GEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDG--WGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIV 228 (276)
Q Consensus 152 gEGit~~-g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~EG--WGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V 228 (276)
-..+++. ++++....-.++.+.+||..+.+.+..+.-....- ..+.+||+.|+....+..|.++|.++.+....+..
T Consensus 126 v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~ 205 (393)
T 1erj_A 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI 205 (393)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEc
Confidence 3456665 34555566678999999999999988886321222 33568999998877888999999999988777664
Q ss_pred eeCCEeeeeeeeeEEE--CCEEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 229 RYKGREVRNLNELEFI--KGEVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 229 ~~~g~pv~~lNELE~i--dG~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
.. .+.-+.+. +|.++|..-.+ ..|.+.|.++++.+
T Consensus 206 ~~------~v~~~~~~~~~~~~l~~~s~d-~~v~iwd~~~~~~~ 242 (393)
T 1erj_A 206 ED------GVTTVAVSPGDGKYIAAGSLD-RAVRVWDSETGFLV 242 (393)
T ss_dssp SS------CEEEEEECSTTCCEEEEEETT-SCEEEEETTTCCEE
T ss_pred CC------CcEEEEEECCCCCEEEEEcCC-CcEEEEECCCCcEE
Confidence 42 23334454 67766666566 88999999886643
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.70 E-value=8.6e-07 Score=77.13 Aligned_cols=148 Identities=18% Similarity=0.175 Sum_probs=103.0
Q ss_pred CceEEEEecCCEEEEEcCCC---------------CCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEEEEEeeC
Q 023864 106 FTQGLLYAENDTLFESTGLY---------------GRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQ 169 (276)
Q Consensus 106 FTQGL~~~~dg~LyeStG~y---------------g~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~LyqlTwk~ 169 (276)
+..++.+++||+||.+...| +...|.++|.+ |++... .....++.|+++.. +++++..-.+
T Consensus 116 ~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~--~~~~~~~~gi~~s~dg~~lv~~~~~ 192 (296)
T 3e5z_A 116 SPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAP--IRDRVKPNGLAFLPSGNLLVSDTGD 192 (296)
T ss_dssp CCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEE--ECCCSSEEEEEECTTSCEEEEETTT
T ss_pred CCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEe--ecCCCCCccEEECCCCCEEEEeCCC
Confidence 44689999999999964322 24589999988 776433 23344567888863 3444777788
Q ss_pred CEEEEEeCC-CCcE---EEEEe--cCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEE
Q 023864 170 KTGFIYDQN-NLNK---LEEFT--HQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEF 243 (276)
Q Consensus 170 ~~v~V~D~~-tlk~---i~~~~--~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~ 243 (276)
+.+.+||.+ +.+. ...+. ...+.|..+.+||. ||+++ .+.|.++||+ .+.+.++.+... ++.+.+
T Consensus 193 ~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~-~~~v~~~~~~-g~~~~~~~~~~~------~~~~~f 263 (296)
T 3e5z_A 193 NATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA-GDGVHVLTPD-GDELGRVLTPQT------TSNLCF 263 (296)
T ss_dssp TEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE-TTEEEEECTT-SCEEEEEECSSC------CCEEEE
T ss_pred CeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc-CCeEEEECCC-CCEEEEEECCCC------ceeEEE
Confidence 999999976 4443 33331 11356777778885 88887 7899999997 778777776542 344556
Q ss_pred E--CC-EEEEEeCCCCCeEEEEeCCCCc
Q 023864 244 I--KG-EVWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 244 i--dG-~lyANvw~s~d~I~vIDp~T~~ 268 (276)
. || .||+.. . +.+.++|+++.+
T Consensus 264 ~~~d~~~L~v~t--~-~~l~~~~~~~~~ 288 (296)
T 3e5z_A 264 GGPEGRTLYMTV--S-TEFWSIETNVRG 288 (296)
T ss_dssp ESTTSCEEEEEE--T-TEEEEEECSCCB
T ss_pred ECCCCCEEEEEc--C-CeEEEEEccccc
Confidence 3 33 699887 3 789999999965
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.7e-06 Score=78.69 Aligned_cols=157 Identities=6% Similarity=-0.070 Sum_probs=111.7
Q ss_pred CCceEEEEecC---CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCc
Q 023864 105 AFTQGLLYAEN---DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLN 181 (276)
Q Consensus 105 aFTQGL~~~~d---g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk 181 (276)
.....+.|++| ++++.+++ .+..|++||+.+++.+.....+....-..+++.++++++..-.++.+.+||..+.+
T Consensus 196 ~~v~~~~~sp~~~~~~~l~s~~--~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~ 273 (450)
T 2vdu_B 196 SMLTDVHLIKDSDGHQFIITSD--RDEHIKISHYPQCFIVDKWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGK 273 (450)
T ss_dssp SCEEEEEEEECTTSCEEEEEEE--TTSCEEEEEESCTTCEEEECCCCSSCEEEEEECSTTEEEEEESSSEEEEEETTTCC
T ss_pred CceEEEEEcCCCCCCcEEEEEc--CCCcEEEEECCCCceeeeeecCCCCceEEEEECCCCEEEEEeCCCeEEEEECCCCc
Confidence 44578999999 88777776 56899999999998776644343333445555444444455588999999999999
Q ss_pred EEEEEecC---------------------------CCCeeEEeeCCCEEEEEC-CCceEEEEcC--CCC---cEEEEEEe
Q 023864 182 KLEEFTHQ---------------------------MKDGWGLATDGKVLFGSD-GSSMLYQIDP--QTL---KVIRKDIV 228 (276)
Q Consensus 182 ~i~~~~~~---------------------------~~EGWGLT~Dg~~L~vSD-GS~~L~viDp--~t~---~vi~~I~V 228 (276)
.+.+++.. .-.+....+||+.|+++. +...|.++|. .+. +.+..+..
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~ 353 (450)
T 2vdu_B 274 NLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITF 353 (450)
T ss_dssp EEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEEC
T ss_pred EeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEecc
Confidence 99988631 011334567899999876 7899999998 444 55555554
Q ss_pred eeCCEeeeeeeeeEEECCEEEEEeCCCCC---------eEEEEeCCCCcEE
Q 023864 229 RYKGREVRNLNELEFIKGEVWANVWQVWP---------CIPYAYLQAFGSS 270 (276)
Q Consensus 229 ~~~g~pv~~lNELE~idG~lyANvw~s~d---------~I~vIDp~T~~v~ 270 (276)
. ..+..+.+..+.+|+.+-.. + .|..+|.++++..
T Consensus 354 ~------~~v~~~~~~~~~~~v~~~~~-~~~~~~~~~i~v~~~~~~~~~~~ 397 (450)
T 2vdu_B 354 P------YNVISLSAHNDEFQVTLDNK-ESSGVQKNFAKFIEYNLNENSFV 397 (450)
T ss_dssp S------SCEEEEEEETTEEEEEECCT-TCCSSCCCSEEEEEEETTTTEEE
T ss_pred C------CceEEEEecCCcEEEEEecc-cCCCCCCcceEEEEEEcCCCeEE
Confidence 3 24566778888888777543 3 8888899887643
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.8e-06 Score=73.70 Aligned_cols=167 Identities=8% Similarity=-0.079 Sum_probs=110.2
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEEEEEeeCCEEEEEeCCCCcE
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNK 182 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~LyqlTwk~~~v~V~D~~tlk~ 182 (276)
..-+..+.|++||.++.+++ .+..|++||+.+++.+....-... --..+++.. +++++..-.++.+.+||..+.+.
T Consensus 32 ~~~v~~~~~s~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 108 (369)
T 3zwl_B 32 ERPLTQVKYNKEGDLLFSCS--KDSSASVWYSLNGERLGTLDGHTG-TIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQC 108 (369)
T ss_dssp SSCEEEEEECTTSCEEEEEE--SSSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred eceEEEEEEcCCCCEEEEEe--CCCEEEEEeCCCchhhhhhhhcCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 44567999999988776666 567899999999998877653322 234566653 44555556789999999999999
Q ss_pred EEEEecC-CCCeeEEeeCCCEEEEECCC-----ceEEEEcCCCCcEEEEEEeeeCC--Eee------eeeeeeEEE-CCE
Q 023864 183 LEEFTHQ-MKDGWGLATDGKVLFGSDGS-----SMLYQIDPQTLKVIRKDIVRYKG--REV------RNLNELEFI-KGE 247 (276)
Q Consensus 183 i~~~~~~-~~EGWGLT~Dg~~L~vSDGS-----~~L~viDp~t~~vi~~I~V~~~g--~pv------~~lNELE~i-dG~ 247 (276)
+..+..+ ......+++||+.|+++... ..|.++|..+.+....+...... ..+ ..+..+.+. +|.
T Consensus 109 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (369)
T 3zwl_B 109 VATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGK 188 (369)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGC
T ss_pred EEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCC
Confidence 9999854 22344577899999887665 89999998776543333222110 000 033344444 454
Q ss_pred EEEEeCCCCCeEEEEeCCCCcEEEEEE
Q 023864 248 VWANVWQVWPCIPYAYLQAFGSSLVYV 274 (276)
Q Consensus 248 lyANvw~s~d~I~vIDp~T~~v~l~~~ 274 (276)
.++..-.. ..|.+.|..++...+..+
T Consensus 189 ~l~~~~~d-g~i~i~d~~~~~~~~~~~ 214 (369)
T 3zwl_B 189 YIIAGHKD-GKISKYDVSNNYEYVDSI 214 (369)
T ss_dssp EEEEEETT-SEEEEEETTTTTEEEEEE
T ss_pred EEEEEcCC-CEEEEEECCCCcEeEEEE
Confidence 44444456 789999998855444443
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=98.66 E-value=8.2e-06 Score=70.89 Aligned_cols=168 Identities=10% Similarity=-0.010 Sum_probs=118.6
Q ss_pred eEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEEEEEeeCCE
Q 023864 93 IQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKT 171 (276)
Q Consensus 93 ~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~LyqlTwk~~~ 171 (276)
+.+..++.. ...-...+.|++||+++.+++ .+..|+.||+.+++......-.... -..+++.. +++....-.++.
T Consensus 13 ~~~~~~~~g-h~~~v~~~~~s~~~~~l~s~~--~dg~i~iw~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~s~~~d~~ 88 (312)
T 4ery_A 13 YALKFTLAG-HTKAVSSVKFSPNGEWLASSS--ADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLVSASDDKT 88 (312)
T ss_dssp CEEEEEECC-CSSCEEEEEECTTSSEEEEEE--TTSCEEEEETTTCCEEEEECCCSSC-EEEEEECTTSSEEEEEETTSE
T ss_pred ceeEEEEcc-cCCcEEEEEECCCCCEEEEee--CCCeEEEEeCCCcccchhhccCCCc-eEEEEEcCCCCEEEEECCCCE
Confidence 445555542 345568999999998777766 6778999999999987765433222 23566653 455566667899
Q ss_pred EEEEeCCCCcEEEEEecCCCC--eeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEE
Q 023864 172 GFIYDQNNLNKLEEFTHQMKD--GWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEV 248 (276)
Q Consensus 172 v~V~D~~tlk~i~~~~~~~~E--GWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~l 248 (276)
+.+||..+.+.+.++...... ...+.+|++.|+....+..|.++|.++.+.+..+.... . .++.+.+. +|.+
T Consensus 89 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~---~v~~~~~~~~~~~ 163 (312)
T 4ery_A 89 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS--D---PVSAVHFNRDGSL 163 (312)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCS--S---CEEEEEECTTSSE
T ss_pred EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCC--C---cEEEEEEcCCCCE
Confidence 999999999999888643122 33467889999887778899999999998877665432 2 24445565 5655
Q ss_pred EEEeCCCCCeEEEEeCCCCcEE
Q 023864 249 WANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 249 yANvw~s~d~I~vIDp~T~~v~ 270 (276)
++..-.+ ..|.+.|.++++..
T Consensus 164 l~~~~~d-~~i~~wd~~~~~~~ 184 (312)
T 4ery_A 164 IVSSSYD-GLCRIWDTASGQCL 184 (312)
T ss_dssp EEEEETT-SCEEEEETTTCCEE
T ss_pred EEEEeCC-CcEEEEECCCCcee
Confidence 5555566 88999999987644
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.66 E-value=3e-06 Score=76.37 Aligned_cols=162 Identities=9% Similarity=-0.046 Sum_probs=110.7
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCce----EEEEEEeCCEEEEEEeeC
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYF----GEGLTLLGEKLFQVTWLQ 169 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~F----gEGit~~g~~LyqlTwk~ 169 (276)
+++-+++.+.... ....+. ++.+|..+. ...|..+|.++|+++-+...+...+ ....++.++.+|+.+. +
T Consensus 124 ~~~W~~~~~~~~~-~~p~~~-~~~v~v~~~---~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~-~ 197 (376)
T 3q7m_A 124 TVAWQTKVAGEAL-SRPVVS-DGLVLIHTS---NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGD-N 197 (376)
T ss_dssp CEEEEEECSSCCC-SCCEEE-TTEEEEECT---TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCT-T
T ss_pred CEEEEEeCCCceE-cCCEEE-CCEEEEEcC---CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcC-C
Confidence 3444444432222 233444 588998654 4689999999999988887764432 1234556889988764 6
Q ss_pred CEEEEEeCCCCcEEEEEecCCCCee-----------EEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeee
Q 023864 170 KTGFIYDQNNLNKLEEFTHQMKDGW-----------GLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNL 238 (276)
Q Consensus 170 ~~v~V~D~~tlk~i~~~~~~~~EGW-----------GLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~l 238 (276)
+.++.+|+++.+.+-+++...+.|. ...-++..+|+......|+.+|++|++++-+.... ..
T Consensus 198 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~-------~~ 270 (376)
T 3q7m_A 198 GRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG-------SV 270 (376)
T ss_dssp TEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC-------CE
T ss_pred CEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC-------CC
Confidence 7899999999999988875422221 11224678888777789999999999987655432 12
Q ss_pred eeeEEECCEEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 239 NELEFIKGEVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 239 NELE~idG~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
..+...++.||+.. .. +.|..+|++||++.
T Consensus 271 ~~~~~~~~~l~~~~-~~-g~l~~~d~~tG~~~ 300 (376)
T 3q7m_A 271 NDFIVDGNRIYLVD-QN-DRVMALTIDGGVTL 300 (376)
T ss_dssp EEEEEETTEEEEEE-TT-CCEEEEETTTCCEE
T ss_pred CCceEECCEEEEEc-CC-CeEEEEECCCCcEE
Confidence 33557799999887 35 68999999998864
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=98.65 E-value=4.7e-06 Score=71.46 Aligned_cols=157 Identities=10% Similarity=0.077 Sum_probs=107.9
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC-CceEEEEEEeC-CEEEEEEeeCCEEEEEeCCCCc
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG-SYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLN 181 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~-~~FgEGit~~g-~~LyqlTwk~~~v~V~D~~tlk 181 (276)
......+.|++|+.++.+++ .+..|+.||+++++......+.. ..--..+++.. ++++...-.++.+.+||..+.+
T Consensus 97 ~~~v~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~ 174 (337)
T 1gxr_A 97 DNYIRSCKLLPDGCTLIVGG--EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT 174 (337)
T ss_dssp TSBEEEEEECTTSSEEEEEE--SSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred CCcEEEEEEcCCCCEEEEEc--CCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Confidence 55668999999987666555 56789999999987433332222 22234566653 3444555578899999999999
Q ss_pred EEEEEecCCCC--eeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCCCCCe
Q 023864 182 KLEEFTHQMKD--GWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQVWPC 258 (276)
Q Consensus 182 ~i~~~~~~~~E--GWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~s~d~ 258 (276)
.+.++...... ...+++||+.|+.......|.++|..+.+.+..+.... .+..+.+. +|..++..... +.
T Consensus 175 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~------~v~~~~~s~~~~~l~~~~~~-~~ 247 (337)
T 1gxr_A 175 LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTS------QIFSLGYCPTGEWLAVGMES-SN 247 (337)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS------CEEEEEECTTSSEEEEEETT-SC
T ss_pred eeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCC------ceEEEEECCCCCEEEEEcCC-Cc
Confidence 99988643122 33456799999988888899999999998887765432 34455564 55544444456 88
Q ss_pred EEEEeCCCCcE
Q 023864 259 IPYAYLQAFGS 269 (276)
Q Consensus 259 I~vIDp~T~~v 269 (276)
|.+.|.++++.
T Consensus 248 i~~~~~~~~~~ 258 (337)
T 1gxr_A 248 VEVLHVNKPDK 258 (337)
T ss_dssp EEEEETTSSCE
T ss_pred EEEEECCCCCe
Confidence 99999988654
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.9e-06 Score=74.76 Aligned_cols=166 Identities=7% Similarity=0.018 Sum_probs=112.0
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEEEEEeeC---
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQ--- 169 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~LyqlTwk~--- 169 (276)
+.+.++.. .......+.|++|+.++.+++ .+..|+.||+++++.+.....+.... .+++.. ++.+.+.-.+
T Consensus 65 ~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~~~~~~~~~ 139 (369)
T 3zwl_B 65 ERLGTLDG-HTGTIWSIDVDCFTKYCVTGS--ADYSIKLWDVSNGQCVATWKSPVPVK--RVEFSPCGNYFLAILDNVMK 139 (369)
T ss_dssp CEEEEECC-CSSCEEEEEECTTSSEEEEEE--TTTEEEEEETTTCCEEEEEECSSCEE--EEEECTTSSEEEEEECCBTT
T ss_pred hhhhhhhh-cCCcEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCcEEEEeecCCCeE--EEEEccCCCEEEEecCCccC
Confidence 45666653 244567999999988777666 67899999999999988888555544 455543 3344444444
Q ss_pred --CEEEEEeCCCCcEEE-----------EEecC----CCCeeEEeeCCCEEEEECCCceEEEEcCCC-CcEEEEEEeeeC
Q 023864 170 --KTGFIYDQNNLNKLE-----------EFTHQ----MKDGWGLATDGKVLFGSDGSSMLYQIDPQT-LKVIRKDIVRYK 231 (276)
Q Consensus 170 --~~v~V~D~~tlk~i~-----------~~~~~----~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t-~~vi~~I~V~~~ 231 (276)
+.+.+||..+.+... .+... ......+++||+.|++......|.++|..+ .+.+..+....
T Consensus 140 ~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~- 218 (369)
T 3zwl_B 140 NPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHE- 218 (369)
T ss_dssp BCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCS-
T ss_pred CCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCC-
Confidence 899999987654322 22211 012233668999999988889999999999 67776666532
Q ss_pred CEeeeeeeeeEEE-CCEEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 232 GREVRNLNELEFI-KGEVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 232 g~pv~~lNELE~i-dG~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
. .++.+.+. +|..++..-.. ..|.+.|.++++..
T Consensus 219 -~---~v~~~~~~~~~~~l~~~~~d-~~i~v~d~~~~~~~ 253 (369)
T 3zwl_B 219 -K---SISDMQFSPDLTYFITSSRD-TNSFLVDVSTLQVL 253 (369)
T ss_dssp -S---CEEEEEECTTSSEEEEEETT-SEEEEEETTTCCEE
T ss_pred -C---ceeEEEECCCCCEEEEecCC-ceEEEEECCCCcee
Confidence 2 34455565 55544444456 89999999997654
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=98.62 E-value=5.9e-06 Score=71.83 Aligned_cols=170 Identities=12% Similarity=0.025 Sum_probs=116.0
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe-CCEEEEEEeeCCEE
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQKTG 172 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~-g~~LyqlTwk~~~v 172 (276)
+.+.++.. .......+.|++++.++.+++ .+..|+.||+++++.+......... -..+++. +++++...-.++.+
T Consensus 98 ~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~~i 173 (312)
T 4ery_A 98 KCLKTLKG-HSNYVFCCNFNPQSNLIVSGS--FDESVRIWDVKTGKCLKTLPAHSDP-VSAVHFNRDGSLIVSSSYDGLC 173 (312)
T ss_dssp CEEEEEEC-CSSCEEEEEECSSSSEEEEEE--TTSCEEEEETTTCCEEEEECCCSSC-EEEEEECTTSSEEEEEETTSCE
T ss_pred cEEEEEcC-CCCCEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCEEEEEecCCCCc-EEEEEEcCCCCEEEEEeCCCcE
Confidence 34555543 355668999999988777766 6778999999999987766543332 2355664 34566666678999
Q ss_pred EEEeCCCCcEEEEEecCCC---CeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeee-eEEECCEE
Q 023864 173 FIYDQNNLNKLEEFTHQMK---DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNE-LEFIKGEV 248 (276)
Q Consensus 173 ~V~D~~tlk~i~~~~~~~~---EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNE-LE~idG~l 248 (276)
.+||..+.+.+.++..... ....+++||+.|+.+.....|.++|..+.+.++.+.-..+.. ..+.- ....+|..
T Consensus 174 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 251 (312)
T 4ery_A 174 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK--YCIFANFSVTGGKW 251 (312)
T ss_dssp EEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSS--SCCCEEEECSSSCE
T ss_pred EEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCce--EEEEEEEEeCCCcE
Confidence 9999999999888754311 223467899999998888899999999998877664332111 11110 11125666
Q ss_pred EEEeCCCCCeEEEEeCCCCcEE
Q 023864 249 WANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 249 yANvw~s~d~I~vIDp~T~~v~ 270 (276)
.+..-.+ ..|.+.|.++++.+
T Consensus 252 l~sg~~d-g~i~vwd~~~~~~~ 272 (312)
T 4ery_A 252 IVSGSED-NLVYIWNLQTKEIV 272 (312)
T ss_dssp EEECCTT-SCEEEEETTTCCEE
T ss_pred EEEECCC-CEEEEEECCCchhh
Confidence 6666556 88999999886643
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=98.61 E-value=3.6e-06 Score=73.94 Aligned_cols=166 Identities=10% Similarity=0.021 Sum_probs=111.8
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe-CCEEEEEEeeCCEE
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQKTG 172 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~-g~~LyqlTwk~~~v 172 (276)
++.+++.. ...-+.++.|+|||.++.+++ .+..|+.||+++++.+........+. ..+.+. ++++....-.++++
T Consensus 4 ~~~~~~~~-h~~~V~~~~fsp~~~~l~s~~--~dg~v~lWd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~s~s~d~~i 79 (304)
T 2ynn_A 4 DIKKTFSN-RSDRVKGIDFHPTEPWVLTTL--YSGRVELWNYETQVEVRSIQVTETPV-RAGKFIARKNWIIVGSDDFRI 79 (304)
T ss_dssp CCEEEEEE-ECSCEEEEEECSSSSEEEEEE--TTSEEEEEETTTTEEEEEEECCSSCE-EEEEEEGGGTEEEEEETTSEE
T ss_pred eeEEeecC-CCCceEEEEECCCCCEEEEEc--CCCcEEEEECCCCceeEEeeccCCcE-EEEEEeCCCCEEEEECCCCEE
Confidence 44555542 244567999999998877777 77899999999999888776554432 233333 34455555678999
Q ss_pred EEEeCCCCcEEEEEecCCC--CeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE--CCEE
Q 023864 173 FIYDQNNLNKLEEFTHQMK--DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGEV 248 (276)
Q Consensus 173 ~V~D~~tlk~i~~~~~~~~--EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i--dG~l 248 (276)
.+||.++.+.+.++..... ....+.+|++.|+....+..|.++|.++.......-- ++. ..++-+.+. ++.+
T Consensus 80 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~---~h~-~~v~~v~~~p~~~~~ 155 (304)
T 2ynn_A 80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE---GHE-HFVMCVAFNPKDPST 155 (304)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC---CCC-SCEEEEEECTTCTTE
T ss_pred EEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhc---ccC-CcEEEEEECCCCCCE
Confidence 9999999999998864311 2334678999888877788999999887744332211 111 234455565 4556
Q ss_pred EEEeCCCCCeEEEEeCCCCc
Q 023864 249 WANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 249 yANvw~s~d~I~vIDp~T~~ 268 (276)
+|..-.+ ..|.+-|..+++
T Consensus 156 l~sgs~D-~~v~iwd~~~~~ 174 (304)
T 2ynn_A 156 FASGCLD-RTVKVWSLGQST 174 (304)
T ss_dssp EEEEETT-SEEEEEETTCSS
T ss_pred EEEEeCC-CeEEEEECCCCC
Confidence 6665556 778888876543
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.60 E-value=9.2e-07 Score=78.17 Aligned_cols=144 Identities=14% Similarity=0.188 Sum_probs=99.2
Q ss_pred CceEEEEecCCEEEEEcCCC---------------CCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEee
Q 023864 106 FTQGLLYAENDTLFESTGLY---------------GRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWL 168 (276)
Q Consensus 106 FTQGL~~~~dg~LyeStG~y---------------g~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk 168 (276)
....+.+++||+||.+.-.| +...|.++|+++|++.... ...++-|+++. ++.||+.+..
T Consensus 132 ~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~~~~p~gl~~spdg~~lyv~~~~ 208 (305)
T 3dr2_A 132 SPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---DLDHPNGLAFSPDEQTLYVSQTP 208 (305)
T ss_dssp CCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---EESSEEEEEECTTSSEEEEEECC
T ss_pred CCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---cCCCCcceEEcCCCCEEEEEecC
Confidence 34679999999999864211 2467999999999875443 22345678886 4579999887
Q ss_pred C-----CEEEEEeCCCCcE--EEEEe---cCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeee
Q 023864 169 Q-----KTGFIYDQNNLNK--LEEFT---HQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNL 238 (276)
Q Consensus 169 ~-----~~v~V~D~~tlk~--i~~~~---~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~l 238 (276)
. +.+.+||.+.-.. ...+. ...++|..+.+||. ||++++ +.|+++|| +.+.+.++.+.. .+
T Consensus 209 ~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~-~gv~~~~~-~g~~~~~~~~~~------~~ 279 (305)
T 3dr2_A 209 EQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSSG-TGVCVFDS-DGQLLGHIPTPG------TA 279 (305)
T ss_dssp C---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECCS-SEEEEECT-TSCEEEEEECSS------CC
T ss_pred CcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEecC-CcEEEECC-CCCEEEEEECCC------ce
Confidence 3 8999999765431 11221 12456777788887 999884 56999999 578888887754 23
Q ss_pred eeeEEE-C-CEEEEEeCCCCCeEEEEeC
Q 023864 239 NELEFI-K-GEVWANVWQVWPCIPYAYL 264 (276)
Q Consensus 239 NELE~i-d-G~lyANvw~s~d~I~vIDp 264 (276)
+-+.+. + +.||+... +.+.++++
T Consensus 280 ~~~~f~~d~~~L~it~~---~~l~~~~~ 304 (305)
T 3dr2_A 280 SNCTFDQAQQRLFITGG---PCLWMLPL 304 (305)
T ss_dssp CEEEECTTSCEEEEEET---TEEEEEEC
T ss_pred eEEEEeCCCCEEEEEcC---CeEEEEEC
Confidence 344553 3 47998874 56888875
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.60 E-value=3.6e-08 Score=99.75 Aligned_cols=151 Identities=9% Similarity=0.092 Sum_probs=108.2
Q ss_pred CceEEEEecC-CEEEEEcCCCCCCeEEEEeCCC----CcEEEEeecC-CCceEEEEEEe--CCEEEEEEeeCCEEEEEeC
Q 023864 106 FTQGLLYAEN-DTLFESTGLYGRSSVRRVALET----GKVEAINQME-GSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQ 177 (276)
Q Consensus 106 FTQGL~~~~d-g~LyeStG~yg~S~I~~iDl~t----gkv~~~~~l~-~~~FgEGit~~--g~~LyqlTwk~~~v~V~D~ 177 (276)
...||.|+++ ++||.+.- ....|+++++++ .... ..+. ....++||+++ +++||++....+++.++|+
T Consensus 407 ~p~gla~d~~~~~Ly~sD~--~~~~I~~~~~~g~~~~~~~~--~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~ 482 (699)
T 1n7d_A 407 NVVALDTEVASNRIYWSDL--SQRMICSTQLDRAHGVSSYD--TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 482 (699)
T ss_dssp TCCCCEEETTTTEEEECCT--TTTSBEEEESCCCCC-CCCC--CBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBS
T ss_pred ceEEEccccccCeEEEEec--CCCeEEEEecCCCCCCcceE--EEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEec
Confidence 3469999974 78998754 678999999986 2211 1122 22346788885 6899999999999999998
Q ss_pred CCCcEEEEEec--CCCCeeEEeeCCCEEEEEC-CC-ceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE--CCEEEEE
Q 023864 178 NNLNKLEEFTH--QMKDGWGLATDGKVLFGSD-GS-SMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGEVWAN 251 (276)
Q Consensus 178 ~tlk~i~~~~~--~~~EGWGLT~Dg~~L~vSD-GS-~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i--dG~lyAN 251 (276)
+.......+.. ..|.|..+.+++.+||++| |. .+|+++|+..-.. + +.+.. .+..+|-|.+. +++||++
T Consensus 483 dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~-~l~~~---~l~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 483 KGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-Y-SLVTE---NIQWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp SSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-C-EESCS---SCSSCCCEEECTTTCCEEEE
T ss_pred CCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-e-EEEeC---CCCCccEEEEeccCCEEEEE
Confidence 87654433332 2467888888899999999 65 7999998764321 1 11221 34578888886 5789999
Q ss_pred eCCCCCeEEEEeCCC
Q 023864 252 VWQVWPCIPYAYLQA 266 (276)
Q Consensus 252 vw~s~d~I~vIDp~T 266 (276)
.+.. +.|.+||+..
T Consensus 558 D~~~-~~I~~~d~dG 571 (699)
T 1n7d_A 558 DSKL-HSISSIDVNG 571 (699)
T ss_dssp ETTT-TEEEEECSSS
T ss_pred ecCC-CeEEEEccCC
Confidence 9999 9999999965
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.56 E-value=2.1e-05 Score=70.16 Aligned_cols=167 Identities=11% Similarity=0.064 Sum_probs=117.6
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEEEEEeeCCEE
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTG 172 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~LyqlTwk~~~v 172 (276)
+.+.++...+ .-...+.|+||++++.+++ ....|+.||+++++......... .+-..+++.. +++....-.++.+
T Consensus 113 ~~~~~~~~~~-~~~~~~~~spdg~~l~~g~--~dg~v~i~~~~~~~~~~~~~~~~-~~v~~~~~spdg~~lasg~~dg~i 188 (321)
T 3ow8_A 113 KQIKSIDAGP-VDAWTLAFSPDSQYLATGT--HVGKVNIFGVESGKKEYSLDTRG-KFILSIAYSPDGKYLASGAIDGII 188 (321)
T ss_dssp EEEEEEECCT-TCCCCEEECTTSSEEEEEC--TTSEEEEEETTTCSEEEEEECSS-SCEEEEEECTTSSEEEEEETTSCE
T ss_pred CEEEEEeCCC-ccEEEEEECCCCCEEEEEc--CCCcEEEEEcCCCceeEEecCCC-ceEEEEEECCCCCEEEEEcCCCeE
Confidence 4455554322 2235799999988777666 67889999999998776655433 2345666653 4555566678999
Q ss_pred EEEeCCCCcEEEEEecC--CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEE
Q 023864 173 FIYDQNNLNKLEEFTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVW 249 (276)
Q Consensus 173 ~V~D~~tlk~i~~~~~~--~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~ly 249 (276)
.+||..+.+.+.++.-. .-....+++||+.|+....+..|.++|.++.+.+.++.-.. ..++.+.+. +|...
T Consensus 189 ~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-----~~v~~~~~sp~~~~l 263 (321)
T 3ow8_A 189 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA-----SWVLNVAFCPDDTHF 263 (321)
T ss_dssp EEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCS-----SCEEEEEECTTSSEE
T ss_pred EEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCC-----CceEEEEECCCCCEE
Confidence 99999999999988632 12455678899999888778899999999988876653221 134456665 56666
Q ss_pred EEeCCCCCeEEEEeCCCCcEE
Q 023864 250 ANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 250 ANvw~s~d~I~vIDp~T~~v~ 270 (276)
|..-.+ ..|.+-|.++++.+
T Consensus 264 ~s~s~D-~~v~iwd~~~~~~~ 283 (321)
T 3ow8_A 264 VSSSSD-KSVKVWDVGTRTCV 283 (321)
T ss_dssp EEEETT-SCEEEEETTTTEEE
T ss_pred EEEeCC-CcEEEEeCCCCEEE
Confidence 666566 88999999986543
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=3e-06 Score=77.19 Aligned_cols=157 Identities=8% Similarity=0.012 Sum_probs=107.6
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeCCEEEEEeCCCCc
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLN 181 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~~~v~V~D~~tlk 181 (276)
...+..+.|++||+++.+++ .+..|+.||+++++.+....-... --..+++. +..+++..-.++++.+||..+.+
T Consensus 127 ~~~V~~v~~spdg~~l~sgs--~d~~i~iwd~~~~~~~~~~~~h~~-~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~ 203 (344)
T 4gqb_B 127 DDIVSTVSVLSSGTQAVSGS--KDICIKVWDLAQQVVLSSYRAHAA-QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK 203 (344)
T ss_dssp SSCEEEEEECTTSSEEEEEE--TTSCEEEEETTTTEEEEEECCCSS-CEEEEEECSSCTTEEEEEETTSCEEEEETTSSS
T ss_pred CCCEEEEEECCCCCEEEEEe--CCCeEEEEECCCCcEEEEEcCcCC-ceEEEEecCCCCCceeeeccccccccccccccc
Confidence 55668999999998887776 677899999999998776542222 12344543 45677777788999999999999
Q ss_pred EEEEEecCCC----CeeEEeeCCCEEEEE-CCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CC-EEEEEeCC
Q 023864 182 KLEEFTHQMK----DGWGLATDGKVLFGS-DGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVWANVWQ 254 (276)
Q Consensus 182 ~i~~~~~~~~----EGWGLT~Dg~~L~vS-DGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG-~lyANvw~ 254 (276)
.+.++..... ....+.+++..++++ .....|.++|.++.+.++++.... ..++.+.|. +| ++.|..-.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~-----~~v~~v~fsp~g~~~lasgs~ 278 (344)
T 4gqb_B 204 PASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHS-----QCVTGLVFSPHSVPFLASLSE 278 (344)
T ss_dssp CEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCS-----SCEEEEEECSSSSCCEEEEET
T ss_pred eeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCC-----CCEEEEEEccCCCeEEEEEeC
Confidence 9888754311 122345666655554 456789999999998887776432 234556675 45 56666656
Q ss_pred CCCeEEEEeCCCCcE
Q 023864 255 VWPCIPYAYLQAFGS 269 (276)
Q Consensus 255 s~d~I~vIDp~T~~v 269 (276)
+ ..|.+-|.++++.
T Consensus 279 D-~~i~vwd~~~~~~ 292 (344)
T 4gqb_B 279 D-CSLAVLDSSLSEL 292 (344)
T ss_dssp T-SCEEEECTTCCEE
T ss_pred C-CeEEEEECCCCcE
Confidence 6 7899999998653
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.5e-05 Score=71.98 Aligned_cols=170 Identities=12% Similarity=0.100 Sum_probs=114.7
Q ss_pred eEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCc---EEEEeecC-----CCceEEEEEEe--CCEE
Q 023864 93 IQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGK---VEAINQME-----GSYFGEGLTLL--GEKL 162 (276)
Q Consensus 93 ~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgk---v~~~~~l~-----~~~FgEGit~~--g~~L 162 (276)
-+|++++|.+...=.+|+++.++|+++.+.- +...+.+++..... ...+..++ .+.=-|||+++ +++|
T Consensus 58 g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E--~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L 135 (255)
T 3qqz_A 58 GDLIRTIPLDFVKDLETIEYIGDNQFVISDE--RDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTF 135 (255)
T ss_dssp CCEEEEEECSSCSSEEEEEECSTTEEEEEET--TTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEE
T ss_pred CCEEEEEecCCCCChHHeEEeCCCEEEEEEC--CCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEE
Confidence 4688999875434459999999999888754 66889888876533 34555443 12223999997 4699
Q ss_pred EEEEeeCC-EEEEEeC--C--CCcEEEE------EecCCCCeeEEeeCCCEEEE-ECCCceEEEEcCCCCcEEEEEEeee
Q 023864 163 FQVTWLQK-TGFIYDQ--N--NLNKLEE------FTHQMKDGWGLATDGKVLFG-SDGSSMLYQIDPQTLKVIRKDIVRY 230 (276)
Q Consensus 163 yqlTwk~~-~v~V~D~--~--tlk~i~~------~~~~~~EGWGLT~Dg~~L~v-SDGS~~L~viDp~t~~vi~~I~V~~ 230 (276)
|++..++. .++.+|- . .++.+.. +...-..|..+.+.-++||+ ||.+..|..+|++ ++++.......
T Consensus 136 ~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~ 214 (255)
T 3qqz_A 136 WFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTK 214 (255)
T ss_dssp EEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECST
T ss_pred EEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCC
Confidence 99999887 8888982 2 2333211 11112355556655555555 9999999999977 66888888863
Q ss_pred C--C--EeeeeeeeeEEE-CCEEEEEeCCCCCeEEEEeCCCC
Q 023864 231 K--G--REVRNLNELEFI-KGEVWANVWQVWPCIPYAYLQAF 267 (276)
Q Consensus 231 ~--g--~pv~~lNELE~i-dG~lyANvw~s~d~I~vIDp~T~ 267 (276)
+ | +.+.+++-+.+. +|.||+.+ .- |.+.+..++.+
T Consensus 215 g~~~l~~~~~qpEGia~d~~G~lyIvs-E~-n~~y~f~~~~~ 254 (255)
T 3qqz_A 215 GSRGLSHNIKQAEGVAMDASGNIYIVS-EP-NRFYRFTPQSS 254 (255)
T ss_dssp TGGGCSSCCCSEEEEEECTTCCEEEEE-TT-TEEEEEEC---
T ss_pred ccCCcccccCCCCeeEECCCCCEEEEc-CC-ceEEEEEecCC
Confidence 1 2 235566767776 67899886 66 89999987764
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.55 E-value=6.5e-06 Score=74.84 Aligned_cols=160 Identities=7% Similarity=0.027 Sum_probs=112.6
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEe--eCCEEEEEeCCC
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTW--LQKTGFIYDQNN 179 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTw--k~~~v~V~D~~t 179 (276)
.....++.|++++.++.+++ .+..|+.||+.+++......-... .-..+++. ++.++...- .++.+.+||..+
T Consensus 217 ~~~v~~~~~~~~~~~l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~ 293 (401)
T 4aez_A 217 SSEVCGLAWRSDGLQLASGG--NDNVVQIWDARSSIPKFTKTNHNA-AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT 293 (401)
T ss_dssp SSCEEEEEECTTSSEEEEEE--TTSCEEEEETTCSSEEEEECCCSS-CCCEEEECTTSTTEEEEECCTTTCEEEEEETTT
T ss_pred CCCeeEEEEcCCCCEEEEEe--CCCeEEEccCCCCCccEEecCCcc-eEEEEEECCCCCCEEEEecCCCCCEEEEEECCC
Confidence 45568999999988777666 678999999999988766542222 12355665 456666654 799999999999
Q ss_pred CcEEEEEecC-CCCeeEEeeCCCEEEEECC--CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCCC
Q 023864 180 LNKLEEFTHQ-MKDGWGLATDGKVLFGSDG--SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQV 255 (276)
Q Consensus 180 lk~i~~~~~~-~~EGWGLT~Dg~~L~vSDG--S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~s 255 (276)
.+.+.++..+ .-....+++||+.|+++.| ...|.++|..+.+............ .++-+.+. ||...|....+
T Consensus 294 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~---~v~~~~~s~dg~~l~s~~~d 370 (401)
T 4aez_A 294 GARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDT---RVLYSALSPDGRILSTAASD 370 (401)
T ss_dssp CCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSS---CCCEEEECTTSSEEEEECTT
T ss_pred CCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCC---CEEEEEECCCCCEEEEEeCC
Confidence 9999999765 1233346789999999654 7899999999877766655543222 34445565 56666666566
Q ss_pred CCeEEEEeCCCCcEE
Q 023864 256 WPCIPYAYLQAFGSS 270 (276)
Q Consensus 256 ~d~I~vIDp~T~~v~ 270 (276)
..|.+.|..+++.+
T Consensus 371 -g~i~iw~~~~~~~~ 384 (401)
T 4aez_A 371 -ENLKFWRVYDGDHV 384 (401)
T ss_dssp -SEEEEEECCC----
T ss_pred -CcEEEEECCCCccc
Confidence 89999999997644
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.3e-06 Score=75.69 Aligned_cols=167 Identities=9% Similarity=0.013 Sum_probs=116.8
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCce--------------EEEEEEeC
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYF--------------GEGLTLLG 159 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~F--------------gEGit~~g 159 (276)
+.+..+.. .......+.|++++.++.+++ .+..|+.||+++++.+.........- ...+++.+
T Consensus 140 ~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (425)
T 1r5m_A 140 ALLNVLNF-HRAPIVSVKWNKDGTHIISMD--VENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD 216 (425)
T ss_dssp CEEEEECC-CCSCEEEEEECTTSSEEEEEE--TTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEE
T ss_pred CeeeeccC-CCccEEEEEECCCCCEEEEEe--cCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcC
Confidence 34555553 345567999999987666666 67889999999999888776554320 22445555
Q ss_pred CEEEEEEeeCCEEEEEeCCCCcEEEEEecCCC--CeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeee
Q 023864 160 EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMK--DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRN 237 (276)
Q Consensus 160 ~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~--EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~ 237 (276)
+..+++.-.++.+.+||..+.+.+..+..... ....+++|++.|+.+.....|.++|..+.+.+..+.-.. . .
T Consensus 217 ~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~---~ 291 (425)
T 1r5m_A 217 DDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHS--Q---S 291 (425)
T ss_dssp TTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCS--S---C
T ss_pred CCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCC--c---c
Confidence 55566677789999999999998888853211 234567899999888788899999999988776664321 2 3
Q ss_pred eeeeEEE-CCEEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 238 LNELEFI-KGEVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 238 lNELE~i-dG~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
+..+.+. +| .++..-.. ..|.+.|.++++.+
T Consensus 292 i~~~~~~~~~-~l~~~~~d-~~i~i~d~~~~~~~ 323 (425)
T 1r5m_A 292 IVSASWVGDD-KVISCSMD-GSVRLWSLKQNTLL 323 (425)
T ss_dssp EEEEEEETTT-EEEEEETT-SEEEEEETTTTEEE
T ss_pred EEEEEECCCC-EEEEEeCC-CcEEEEECCCCcEe
Confidence 4456676 56 55555566 89999999986543
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.53 E-value=3.8e-06 Score=72.88 Aligned_cols=164 Identities=9% Similarity=0.058 Sum_probs=107.1
Q ss_pred CCCceEEEEecCCEEEEEcCCC--CCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCC----EEEEEEeeCCEEEEEeC
Q 023864 104 RAFTQGLLYAENDTLFESTGLY--GRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGE----KLFQVTWLQKTGFIYDQ 177 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~y--g~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~----~LyqlTwk~~~v~V~D~ 177 (276)
..-+..+.|+|++..+..+|.. ++..|+.||+++++.......+..---..+++..+ .+....-.++.+.+||.
T Consensus 18 ~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 97 (357)
T 3i2n_A 18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNL 97 (357)
T ss_dssp SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECT
T ss_pred CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeC
Confidence 4445699999987433345534 47899999999998765554443222345555443 66666677899999999
Q ss_pred CCCc-EEEEEecCCCCeeEE--------eeCCCEEEEECCCceEEEEcCCCCc-EEEEEEeeeCCEeeeeeeeeEE----
Q 023864 178 NNLN-KLEEFTHQMKDGWGL--------ATDGKVLFGSDGSSMLYQIDPQTLK-VIRKDIVRYKGREVRNLNELEF---- 243 (276)
Q Consensus 178 ~tlk-~i~~~~~~~~EGWGL--------T~Dg~~L~vSDGS~~L~viDp~t~~-vi~~I~V~~~g~pv~~lNELE~---- 243 (276)
.+.+ .+.++......=..+ ++|++.|+.+..+..|.++|..+.+ .+..+.... +..-..++.+.+
T Consensus 98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~ 176 (357)
T 3i2n_A 98 EAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQ-GENKRDCWTVAFGNAY 176 (357)
T ss_dssp TSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCT-TSCCCCEEEEEEECCC
T ss_pred CCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccC-CCCCCceEEEEEEecc
Confidence 9888 777775321223334 5789999888778899999999886 555554432 221223444443
Q ss_pred -ECCEEEEEeCCCCCeEEEEeCCCCcE
Q 023864 244 -IKGEVWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 244 -idG~lyANvw~s~d~I~vIDp~T~~v 269 (276)
.+|..++....+ ..|.+.|.++++.
T Consensus 177 ~~~~~~l~~~~~d-~~i~i~d~~~~~~ 202 (357)
T 3i2n_A 177 NQEERVVCAGYDN-GDIKLFDLRNMAL 202 (357)
T ss_dssp C-CCCEEEEEETT-SEEEEEETTTTEE
T ss_pred CCCCCEEEEEccC-CeEEEEECccCce
Confidence 356655555566 8899999998665
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=7.8e-06 Score=82.10 Aligned_cols=154 Identities=14% Similarity=0.066 Sum_probs=109.2
Q ss_pred eEEEEecC-CEEEEEcCCC------------C----CCeEEEEeCCCCcEEEEeecCC----------CceEEEEEEeCC
Q 023864 108 QGLLYAEN-DTLFESTGLY------------G----RSSVRRVALETGKVEAINQMEG----------SYFGEGLTLLGE 160 (276)
Q Consensus 108 QGL~~~~d-g~LyeStG~y------------g----~S~I~~iDl~tgkv~~~~~l~~----------~~FgEGit~~g~ 160 (276)
.++.++++ +.+|..++.- | .++|..+|.+||+++-+..+.. .+.-.++..+|+
T Consensus 246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~ 325 (677)
T 1kb0_A 246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGK 325 (677)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTE
T ss_pred cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCc
Confidence 46788876 6899888731 1 1369999999999987766542 233334444442
Q ss_pred --EEEEEEeeCCEEEEEeCCCCcEEEEEecCCCC--------------------------------------eeEEeeCC
Q 023864 161 --KLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKD--------------------------------------GWGLATDG 200 (276)
Q Consensus 161 --~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~E--------------------------------------GWGLT~Dg 200 (276)
+++...-+++.++++|++|.+++.++++. +. +..+++++
T Consensus 326 ~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~ 404 (677)
T 1kb0_A 326 PRKVILHAPKNGFFFVLDRTNGKFISAKNFV-PVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT 404 (677)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESS-CCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT
T ss_pred EeeEEEEECCCCEEEEEECCCCCEecccccc-ccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC
Confidence 55555668999999999999999888753 11 23467788
Q ss_pred CEEEEEC---------------C----------------------------CceEEEEcCCCCcEEEEEEeee--CCEee
Q 023864 201 KVLFGSD---------------G----------------------------SSMLYQIDPQTLKVIRKDIVRY--KGREV 235 (276)
Q Consensus 201 ~~L~vSD---------------G----------------------------S~~L~viDp~t~~vi~~I~V~~--~g~pv 235 (276)
+.+|+.. | ...|..+|++|++++-++..+. .+.+
T Consensus 405 ~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~- 483 (677)
T 1kb0_A 405 GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGT- 483 (677)
T ss_dssp TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCE-
T ss_pred CEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcc-
Confidence 9999842 1 1679999999999988887753 2222
Q ss_pred eeeeeeEEECCEEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 236 RNLNELEFIKGEVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 236 ~~lNELE~idG~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
+...+|.||+. -.+ +.+.++|.+||+++
T Consensus 484 -----~~~~g~~v~~g-~~d-g~l~a~D~~tG~~l 511 (677)
T 1kb0_A 484 -----LTTAGNVVFQG-TAD-GRLVAYHAATGEKL 511 (677)
T ss_dssp -----EEETTTEEEEE-CTT-SEEEEEETTTCCEE
T ss_pred -----eEeCCCEEEEE-CCC-CcEEEEECCCCcee
Confidence 22446788886 356 89999999998865
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=1.9e-05 Score=77.78 Aligned_cols=154 Identities=13% Similarity=0.050 Sum_probs=107.3
Q ss_pred EEEEecC-CEEEEEcCCC---------C----CCeEEEEeCCCCcEEEEeecCC----------CceEEEEEEeCC--EE
Q 023864 109 GLLYAEN-DTLFESTGLY---------G----RSSVRRVALETGKVEAINQMEG----------SYFGEGLTLLGE--KL 162 (276)
Q Consensus 109 GL~~~~d-g~LyeStG~y---------g----~S~I~~iDl~tgkv~~~~~l~~----------~~FgEGit~~g~--~L 162 (276)
.+.++++ +.+|.++|.- + .+.|..+|++||+++=+.++.. .+.-.+.+..|. ++
T Consensus 239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~ 318 (571)
T 2ad6_A 239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPL 318 (571)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEE
T ss_pred eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEE
Confidence 3677764 7899988731 1 2479999999999987776542 222222232332 45
Q ss_pred EEEEeeCCEEEEEeCCCCcEEEEEecCCC-----------------------------------------CeeEEeeCCC
Q 023864 163 FQVTWLQKTGFIYDQNNLNKLEEFTHQMK-----------------------------------------DGWGLATDGK 201 (276)
Q Consensus 163 yqlTwk~~~v~V~D~~tlk~i~~~~~~~~-----------------------------------------EGWGLT~Dg~ 201 (276)
+...-+++.++++|++|.+++.++++... .+-++.++++
T Consensus 319 v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g 398 (571)
T 2ad6_A 319 LSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESR 398 (571)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT
T ss_pred EEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCC
Confidence 55666789999999999999988875410 1123566788
Q ss_pred EEEEEC-------------------------------------CCceEEEEcCCCCcEEEEEEeeeC--CEeeeeeeeeE
Q 023864 202 VLFGSD-------------------------------------GSSMLYQIDPQTLKVIRKDIVRYK--GREVRNLNELE 242 (276)
Q Consensus 202 ~L~vSD-------------------------------------GS~~L~viDp~t~~vi~~I~V~~~--g~pv~~lNELE 242 (276)
.+|+.. ....|+.+|++|++++-++..... +.+ +.
T Consensus 399 ~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~------~~ 472 (571)
T 2ad6_A 399 TLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGT------LY 472 (571)
T ss_dssp EEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBC------EE
T ss_pred EEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCcccee------EE
Confidence 888842 346899999999999888776531 112 22
Q ss_pred EECCEEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 243 FIKGEVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 243 ~idG~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
..+|.||+.. .+ ..|.++|.+||++.
T Consensus 473 t~gg~v~~g~-~d-g~l~a~D~~tG~~l 498 (571)
T 2ad6_A 473 TKGGLVWYAT-LD-GYLKALDNKDGKEL 498 (571)
T ss_dssp ETTTEEEEEC-TT-SEEEEEETTTCCEE
T ss_pred ECCCEEEEEc-CC-CeEEEEECCCCCEE
Confidence 4478999964 56 89999999998865
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=98.49 E-value=2.5e-05 Score=67.71 Aligned_cols=171 Identities=13% Similarity=0.084 Sum_probs=116.1
Q ss_pred eeeEEEEEEecCCCCCceEEEEecC----C-EEEEEcCCCCCCeEEEEeCCCCcEEEEee------cCCCceEEEEEEeC
Q 023864 91 YTIQVVNEFPHDPRAFTQGLLYAEN----D-TLFESTGLYGRSSVRRVALETGKVEAINQ------MEGSYFGEGLTLLG 159 (276)
Q Consensus 91 ~t~~Vv~~~Phd~~aFTQGL~~~~d----g-~LyeStG~yg~S~I~~iDl~tgkv~~~~~------l~~~~FgEGit~~g 159 (276)
+.++.++.+......-...+.|+|+ . .++. ++ +...|+.||+.+++.+.... -....+.-.+...+
T Consensus 5 ~~~~~~~~~~~~h~~~v~~i~~~p~~~~~~~~~~~-~~--~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 81 (366)
T 3k26_A 5 YSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFA-TV--GSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDS 81 (366)
T ss_dssp CCCEEEEEEECTTCSCEEEEEECTTCCTTSCEEEE-EE--ETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECT
T ss_pred eEEEEEEEeecCCCCceEEEEEecccCCCCceEEE-EC--CCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCC
Confidence 5777777887556777789999973 2 3554 44 44599999999887655442 12344544444442
Q ss_pred ---CEEEEEEeeCCEEEEEeCCCCcEEEEEecCCCC--eeEEee-CCCEEEEECCCceEEEEcCCCCcEEEEEEe-eeCC
Q 023864 160 ---EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKD--GWGLAT-DGKVLFGSDGSSMLYQIDPQTLKVIRKDIV-RYKG 232 (276)
Q Consensus 160 ---~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~E--GWGLT~-Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V-~~~g 232 (276)
+++....-.++.+.+||..+.+.+.++...... ...+.+ |++.|+....+..|.++|..+.+.+..+.. ....
T Consensus 82 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 161 (366)
T 3k26_A 82 NTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHR 161 (366)
T ss_dssp TTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCS
T ss_pred CCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccccccc
Confidence 367777778999999999999999998732122 233556 778888877788999999999988776632 1111
Q ss_pred EeeeeeeeeEEE-CCEEEEEeCCCCCeEEEEeCCCCc
Q 023864 233 REVRNLNELEFI-KGEVWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 233 ~pv~~lNELE~i-dG~lyANvw~s~d~I~vIDp~T~~ 268 (276)
. .++.+.+. +|...+..-.+ ..|.+.|.++++
T Consensus 162 ~---~v~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~ 194 (366)
T 3k26_A 162 D---EVLSADYDLLGEKIMSCGMD-HSLKLWRINSKR 194 (366)
T ss_dssp S---CEEEEEECTTSSEEEEEETT-SCEEEEESCSHH
T ss_pred C---ceeEEEECCCCCEEEEecCC-CCEEEEECCCCc
Confidence 2 34555665 45555555466 899999998754
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.4e-05 Score=69.77 Aligned_cols=157 Identities=13% Similarity=0.026 Sum_probs=114.3
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC-CceEEEEEEeC-CEEEEEEeeCCEEEEEeCCCCc
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG-SYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLN 181 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~-~~FgEGit~~g-~~LyqlTwk~~~v~V~D~~tlk 181 (276)
..-+..+.+++++.++.+++ .+..|+.||+++++.+....... ... .+++.. ++.....-.++.+.+||..+.+
T Consensus 80 ~~~v~~~~~~~~~~~l~s~s--~D~~i~lWd~~~~~~~~~~~~~~~~~~--~~~~spdg~~l~~g~~dg~v~i~~~~~~~ 155 (321)
T 3ow8_A 80 QLGVVSVDISHTLPIAASSS--LDAHIRLWDLENGKQIKSIDAGPVDAW--TLAFSPDSQYLATGTHVGKVNIFGVESGK 155 (321)
T ss_dssp SSCEEEEEECSSSSEEEEEE--TTSEEEEEETTTTEEEEEEECCTTCCC--CEEECTTSSEEEEECTTSEEEEEETTTCS
T ss_pred CCCEEEEEECCCCCEEEEEe--CCCcEEEEECCCCCEEEEEeCCCccEE--EEEECCCCCEEEEEcCCCcEEEEEcCCCc
Confidence 44457899999888877777 78899999999999887765443 223 344442 4455556678999999999999
Q ss_pred EEEEEecCCC--CeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCCCCCe
Q 023864 182 KLEEFTHQMK--DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQVWPC 258 (276)
Q Consensus 182 ~i~~~~~~~~--EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~s~d~ 258 (276)
.+.++..... ....+++||+.|........|.++|.++.+.+.++.-.. . .++.+.+. ||.+.|..-.+ ..
T Consensus 156 ~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~--~---~v~~l~~spd~~~l~s~s~d-g~ 229 (321)
T 3ow8_A 156 KEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHA--M---PIRSLTFSPDSQLLVTASDD-GY 229 (321)
T ss_dssp EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS--S---CCCEEEECTTSCEEEEECTT-SC
T ss_pred eeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccC--C---ceeEEEEcCCCCEEEEEcCC-Ce
Confidence 8888864311 244577899999988778899999999998877664321 1 34556665 56666666566 88
Q ss_pred EEEEeCCCCcEE
Q 023864 259 IPYAYLQAFGSS 270 (276)
Q Consensus 259 I~vIDp~T~~v~ 270 (276)
|.+.|.++++..
T Consensus 230 i~iwd~~~~~~~ 241 (321)
T 3ow8_A 230 IKIYDVQHANLA 241 (321)
T ss_dssp EEEEETTTCCEE
T ss_pred EEEEECCCccee
Confidence 999999986543
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=98.47 E-value=3.8e-05 Score=68.45 Aligned_cols=166 Identities=14% Similarity=0.088 Sum_probs=112.9
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCc----EEEEeecCCCceEEEEEEe-CCEEEEEEee
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGK----VEAINQMEGSYFGEGLTLL-GEKLFQVTWL 168 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgk----v~~~~~l~~~~FgEGit~~-g~~LyqlTwk 168 (276)
+.+.+++. .......+.|+++|.++.++| .+..|+.||+.+++ +..... +..-.-..+.+. +++ ++..-.
T Consensus 88 ~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~--~d~~v~iw~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~-l~s~s~ 162 (340)
T 1got_B 88 NKVHAIPL-RSSWVMTCAYAPSGNYVACGG--LDNICSIYNLKTREGNVRVSRELA-GHTGYLSCCRFLDDNQ-IVTSSG 162 (340)
T ss_dssp CEEEEEEC-SSSCEEEEEECTTSSEEEEEE--TTCEEEEEETTTCSBSCEEEEEEE-CCSSCEEEEEEEETTE-EEEEET
T ss_pred CcceEeec-CCccEEEEEECCCCCEEEEEe--CCCeEEEEECccCCCcceeEEEec-CCCccEEEEEECCCCc-EEEEEC
Confidence 45566664 355668999999998877777 67899999998763 322222 212222344444 345 445556
Q ss_pred CCEEEEEeCCCCcEEEEEecCCCCee--EEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-C
Q 023864 169 QKTGFIYDQNNLNKLEEFTHQMKDGW--GLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-K 245 (276)
Q Consensus 169 ~~~v~V~D~~tlk~i~~~~~~~~EGW--GLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-d 245 (276)
++.+.+||..+.+.+.++.-....-+ .+.+|++.|+.......|.++|..+.+.+.++.-.. ..++-+.+. +
T Consensus 163 d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~-----~~v~~v~~~p~ 237 (340)
T 1got_B 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE-----SDINAICFFPN 237 (340)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCS-----SCEEEEEECTT
T ss_pred CCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCc-----CCEEEEEEcCC
Confidence 89999999999999988863212223 356788888777678899999999998776654322 235556665 5
Q ss_pred CEEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 246 GEVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 246 G~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
|..+|..-.+ ..|.+.|.++++..
T Consensus 238 ~~~l~s~s~d-~~v~iwd~~~~~~~ 261 (340)
T 1got_B 238 GNAFATGSDD-ATCRLFDLRADQEL 261 (340)
T ss_dssp SSEEEEEETT-SCEEEEETTTTEEE
T ss_pred CCEEEEEcCC-CcEEEEECCCCcEE
Confidence 6666666566 88999999986654
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=7.8e-05 Score=66.88 Aligned_cols=153 Identities=13% Similarity=0.115 Sum_probs=100.4
Q ss_pred EEecCCCCCceEEEEecC-CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe-CCEEEEEEeeCCEEEEE
Q 023864 98 EFPHDPRAFTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQKTGFIY 175 (276)
Q Consensus 98 ~~Phd~~aFTQGL~~~~d-g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~-g~~LyqlTwk~~~v~V~ 175 (276)
.+......+.+|..++++ +.||.+.. ....|.+||++++++. ...++..+. ++++. ++++|+.+ ++.++++
T Consensus 42 ~~~~~~~~~~egp~~~~~~~~l~~~d~--~~~~i~~~d~~~~~~~-~~~~~~~v~--~i~~~~dg~l~v~~--~~gl~~~ 114 (326)
T 2ghs_A 42 VLDETPMLLGEGPTFDPASGTAWWFNI--LERELHELHLASGRKT-VHALPFMGS--ALAKISDSKQLIAS--DDGLFLR 114 (326)
T ss_dssp EEECSCCSBEEEEEEETTTTEEEEEEG--GGTEEEEEETTTTEEE-EEECSSCEE--EEEEEETTEEEEEE--TTEEEEE
T ss_pred EeeccCCCCCcCCeEeCCCCEEEEEEC--CCCEEEEEECCCCcEE-EEECCCcce--EEEEeCCCeEEEEE--CCCEEEE
Confidence 333334457799999987 67887643 4678999999998764 445665544 55554 57899887 5569999
Q ss_pred eCCCCcEEEEEecC--C----CCeeEEeeCCCEEEEEC-C------CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeE
Q 023864 176 DQNNLNKLEEFTHQ--M----KDGWGLATDGKVLFGSD-G------SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELE 242 (276)
Q Consensus 176 D~~tlk~i~~~~~~--~----~EGWGLT~Dg~~L~vSD-G------S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE 242 (276)
|+++.+...-...+ . .....+.+||+ +|+++ + ...|+.+| +.++..... .....|.+.
T Consensus 115 d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~------~~~~~~~i~ 185 (326)
T 2ghs_A 115 DTATGVLTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--KGKVTKLFA------DISIPNSIC 185 (326)
T ss_dssp ETTTCCEEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--TTEEEEEEE------EESSEEEEE
T ss_pred ECCCCcEEEEeeCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe--CCcEEEeeC------CCcccCCeE
Confidence 99887754322221 0 11233566776 66655 2 46899999 555432211 123567777
Q ss_pred EE-CC-EEEEEeCCCCCeEEEEeCC--CC
Q 023864 243 FI-KG-EVWANVWQVWPCIPYAYLQ--AF 267 (276)
Q Consensus 243 ~i-dG-~lyANvw~s~d~I~vIDp~--T~ 267 (276)
+. || .+|+..... +.|.++|.+ +|
T Consensus 186 ~s~dg~~lyv~~~~~-~~I~~~d~~~~~G 213 (326)
T 2ghs_A 186 FSPDGTTGYFVDTKV-NRLMRVPLDARTG 213 (326)
T ss_dssp ECTTSCEEEEEETTT-CEEEEEEBCTTTC
T ss_pred EcCCCCEEEEEECCC-CEEEEEEcccccC
Confidence 76 56 699888778 899999975 65
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=2.5e-05 Score=71.21 Aligned_cols=170 Identities=12% Similarity=0.056 Sum_probs=107.1
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeCCE
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKT 171 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~~~ 171 (276)
+++..+.. .......+.|++++..+.+++ .+..|+.||+++++............ .+++. +++++...-.++.
T Consensus 156 ~~~~~~~~-h~~~v~~~~~~p~~~~l~s~s--~d~~v~iwd~~~~~~~~~~~~~~~v~--~~~~~~~~~~~l~~~s~d~~ 230 (393)
T 1erj_A 156 KIVMILQG-HEQDIYSLDYFPSGDKLVSGS--GDRTVRIWDLRTGQCSLTLSIEDGVT--TVAVSPGDGKYIAAGSLDRA 230 (393)
T ss_dssp EEEEEECC-CSSCEEEEEECTTSSEEEEEE--TTSEEEEEETTTTEEEEEEECSSCEE--EEEECSTTCCEEEEEETTSC
T ss_pred cEEEEEcc-CCCCEEEEEEcCCCCEEEEec--CCCcEEEEECCCCeeEEEEEcCCCcE--EEEEECCCCCEEEEEcCCCc
Confidence 45555542 234457999999987777777 78899999999999877776655533 44554 4667777778999
Q ss_pred EEEEeCCCCcEEEEEecC------C---CCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEe--------eeCCEe
Q 023864 172 GFIYDQNNLNKLEEFTHQ------M---KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIV--------RYKGRE 234 (276)
Q Consensus 172 v~V~D~~tlk~i~~~~~~------~---~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V--------~~~g~p 234 (276)
+.+||..+.+.+.++..+ . -....+++||+.|+....+..|.++|..+.+....... ...|+.
T Consensus 231 v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~ 310 (393)
T 1erj_A 231 VRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK 310 (393)
T ss_dssp EEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCS
T ss_pred EEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEeccc
Confidence 999999999988877421 0 12234678999998877788999999887544322111 111110
Q ss_pred eeeeeeeEEE-CCEEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 235 VRNLNELEFI-KGEVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 235 v~~lNELE~i-dG~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
..++-+.+. +|...+..-.+ ..|.+-|.++++.+
T Consensus 311 -~~v~~~~~~~~~~~l~sgs~D-~~v~iwd~~~~~~~ 345 (393)
T 1erj_A 311 -DFVLSVATTQNDEYILSGSKD-RGVLFWDKKSGNPL 345 (393)
T ss_dssp -SCEEEEEECGGGCEEEEEETT-SEEEEEETTTCCEE
T ss_pred -CcEEEEEECCCCCEEEEEeCC-CeEEEEECCCCeEE
Confidence 123334443 44444555455 78888898887654
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=98.42 E-value=7.4e-05 Score=65.52 Aligned_cols=167 Identities=10% Similarity=-0.001 Sum_probs=114.0
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeCCE
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKT 171 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~~~ 171 (276)
+.+.++.. .......+.|+|++.++.+++ .+..|+.||++++.......-+..-.-..+++. ++.++...-.+++
T Consensus 88 ~~~~~~~~-h~~~v~~~~~~~~~~~l~sgs--~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~ 164 (304)
T 2ynn_A 88 EKVVDFEA-HPDYIRSIAVHPTKPYVLSGS--DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT 164 (304)
T ss_dssp CEEEEEEC-CSSCEEEEEECSSSSEEEEEE--TTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSE
T ss_pred cEEEEEeC-CCCcEEEEEEcCCCCEEEEEC--CCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCe
Confidence 34555543 345678999999988777777 788999999998854443333333344567775 3466777778999
Q ss_pred EEEEeCCCCcEEEEEecCCCCee---EEee--CCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-C
Q 023864 172 GFIYDQNNLNKLEEFTHQMKDGW---GLAT--DGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-K 245 (276)
Q Consensus 172 v~V~D~~tlk~i~~~~~~~~EGW---GLT~--Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-d 245 (276)
+.+||..+.+...++......+. .+.+ |++.|+....+..|.++|.++.+.+.++.-.. ..++-+.+. +
T Consensus 165 v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~-----~~v~~~~~~p~ 239 (304)
T 2ynn_A 165 VKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM-----SNVSFAVFHPT 239 (304)
T ss_dssp EEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCS-----SCEEEEEECSS
T ss_pred EEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCC-----CCEEEEEECCC
Confidence 99999988877766654321222 2333 66777777678899999999998887765432 123344454 4
Q ss_pred CEEEEEeCCCCCeEEEEeCCCCcE
Q 023864 246 GEVWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 246 G~lyANvw~s~d~I~vIDp~T~~v 269 (276)
+.+.|..-.+ ..|.+-|.++++.
T Consensus 240 ~~~l~s~s~D-g~i~iWd~~~~~~ 262 (304)
T 2ynn_A 240 LPIIISGSED-GTLKIWNSSTYKV 262 (304)
T ss_dssp SSEEEEEETT-SCEEEEETTTCCE
T ss_pred CCEEEEEcCC-CeEEEEECCCCce
Confidence 5566666566 8899999988654
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.41 E-value=5.1e-05 Score=68.89 Aligned_cols=166 Identities=8% Similarity=0.008 Sum_probs=114.0
Q ss_pred EEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEE
Q 023864 95 VVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFI 174 (276)
Q Consensus 95 Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V 174 (276)
++..+.......+..+.|++|+.++.+++ .+..|+.||+++++.+....-.... -..+++.++ ++...-.++.+.+
T Consensus 125 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~-~l~~~~~dg~i~i 200 (401)
T 4aez_A 125 VSALAETDESTYVASVKWSHDGSFLSVGL--GNGLVDIYDVESQTKLRTMAGHQAR-VGCLSWNRH-VLSSGSRSGAIHH 200 (401)
T ss_dssp EEEEEECCTTCCEEEEEECTTSSEEEEEE--TTSCEEEEETTTCCEEEEECCCSSC-EEEEEEETT-EEEEEETTSEEEE
T ss_pred EeEeeecCCCCCEEEEEECCCCCEEEEEC--CCCeEEEEECcCCeEEEEecCCCCc-eEEEEECCC-EEEEEcCCCCEEE
Confidence 44455544466678999999987666555 5678999999999988776533322 235666554 5555667899999
Q ss_pred EeCC-CCcEEEEEecCCCC--eeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEEC-C-EEE
Q 023864 175 YDQN-NLNKLEEFTHQMKD--GWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIK-G-EVW 249 (276)
Q Consensus 175 ~D~~-tlk~i~~~~~~~~E--GWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~id-G-~ly 249 (276)
+|.. ..+.+..+.-...+ +..+++||+.|+....+..|.++|..+.+.+.++.-.. . .++-+.+.. | .++
T Consensus 201 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~--~---~v~~~~~~p~~~~ll 275 (401)
T 4aez_A 201 HDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHN--A---AVKAVAWCPWQSNLL 275 (401)
T ss_dssp EETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCS--S---CCCEEEECTTSTTEE
T ss_pred EecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCc--c---eEEEEEECCCCCCEE
Confidence 9998 45566666532122 33356789999888778899999999988876654321 2 344455653 3 577
Q ss_pred EEeC--CCCCeEEEEeCCCCcEE
Q 023864 250 ANVW--QVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 250 ANvw--~s~d~I~vIDp~T~~v~ 270 (276)
+... .+ ..|.+.|..+++.+
T Consensus 276 ~~~~gs~d-~~i~i~d~~~~~~~ 297 (401)
T 4aez_A 276 ATGGGTMD-KQIHFWNAATGARV 297 (401)
T ss_dssp EEECCTTT-CEEEEEETTTCCEE
T ss_pred EEecCCCC-CEEEEEECCCCCEE
Confidence 7654 45 89999999987654
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=98.40 E-value=1.1e-05 Score=72.39 Aligned_cols=168 Identities=9% Similarity=0.019 Sum_probs=114.0
Q ss_pred EEEEEE-ecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEEEEEeeCCE
Q 023864 94 QVVNEF-PHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKT 171 (276)
Q Consensus 94 ~Vv~~~-Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~LyqlTwk~~~ 171 (276)
+.+..+ .| ......+.|++++.++.+++ .+..|+.||+++++.+....-... --..+++.. ++++...-.++.
T Consensus 130 ~~~~~~~~h--~~~v~~~~~~~~~~~l~s~s--~d~~i~iwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~~~d~~ 204 (420)
T 3vl1_A 130 LQREIDQAH--VSEITKLKFFPSGEALISSS--QDMQLKIWSVKDGSNPRTLIGHRA-TVTDIAIIDRGRNVLSASLDGT 204 (420)
T ss_dssp EEEEETTSS--SSCEEEEEECTTSSEEEEEE--TTSEEEEEETTTCCCCEEEECCSS-CEEEEEEETTTTEEEEEETTSC
T ss_pred ceeeecccc--cCccEEEEECCCCCEEEEEe--CCCeEEEEeCCCCcCceEEcCCCC-cEEEEEEcCCCCEEEEEcCCCc
Confidence 455554 34 45567999999988777666 677999999999987666542222 234566653 344445567889
Q ss_pred EEEEeCCCCcEEEEEecC--CCC------------------------eeEEeeCCCEEEEECCCceEEEEcCCCCcEEEE
Q 023864 172 GFIYDQNNLNKLEEFTHQ--MKD------------------------GWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRK 225 (276)
Q Consensus 172 v~V~D~~tlk~i~~~~~~--~~E------------------------GWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~ 225 (276)
+.+||..+.+.+.++... ... ...+++||+.|+.......|.++|..+.+.+..
T Consensus 205 v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 284 (420)
T 3vl1_A 205 IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQ 284 (420)
T ss_dssp EEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEE
T ss_pred EEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEE
Confidence 999999999999988642 001 112357888998888888999999999987766
Q ss_pred EEeeeCCEeeeeeeeeEEE-CCE-EEEEeCCCCCeEEEEeCCCCcEEE
Q 023864 226 DIVRYKGREVRNLNELEFI-KGE-VWANVWQVWPCIPYAYLQAFGSSL 271 (276)
Q Consensus 226 I~V~~~g~pv~~lNELE~i-dG~-lyANvw~s~d~I~vIDp~T~~v~l 271 (276)
+.... . ..++.+.+. +|. +++..-.+ ..|.+.|.++++..+
T Consensus 285 ~~~~~-~---~~v~~~~~~~~~~~~l~~g~~d-g~i~vwd~~~~~~~~ 327 (420)
T 3vl1_A 285 LPSKF-T---CSCNSLTVDGNNANYIYAGYEN-GMLAQWDLRSPECPV 327 (420)
T ss_dssp ECCTT-S---SCEEEEEECSSCTTEEEEEETT-SEEEEEETTCTTSCS
T ss_pred ccccc-C---CCceeEEEeCCCCCEEEEEeCC-CeEEEEEcCCCcCch
Confidence 64321 1 134555665 343 44444456 899999999876433
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=98.40 E-value=8.8e-05 Score=67.92 Aligned_cols=167 Identities=13% Similarity=0.026 Sum_probs=113.3
Q ss_pred eEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEE
Q 023864 93 IQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTG 172 (276)
Q Consensus 93 ~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v 172 (276)
.+.+.++.. .......+.+ ++..+.+++ .+..|+.||+.+++.+....-.. .....+...++.|+ ..-.++.+
T Consensus 269 ~~~~~~~~~-~~~~v~~~~~--~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~-~~v~~~~~~~~~l~-~~~~dg~i 341 (445)
T 2ovr_B 269 ETCLHTLQG-HTNRVYSLQF--DGIHVVSGS--LDTSIRVWDVETGNCIHTLTGHQ-SLTSGMELKDNILV-SGNADSTV 341 (445)
T ss_dssp TEEEEEECC-CSSCEEEEEE--CSSEEEEEE--TTSCEEEEETTTCCEEEEECCCC-SCEEEEEEETTEEE-EEETTSCE
T ss_pred CcEeEEecC-CCCceEEEEE--CCCEEEEEe--CCCeEEEEECCCCCEEEEEcCCc-ccEEEEEEeCCEEE-EEeCCCeE
Confidence 356666653 2345578888 455445555 57889999999999887765332 23456777776554 44578899
Q ss_pred EEEeCCCCcEEEEEecC---CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEE
Q 023864 173 FIYDQNNLNKLEEFTHQ---MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVW 249 (276)
Q Consensus 173 ~V~D~~tlk~i~~~~~~---~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~ly 249 (276)
.+||..+.+.+.++... ...=..++.+++.|+.+..+..|.++|.++++.++.+.....+..-..++-+.+..+..+
T Consensus 342 ~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 421 (445)
T 2ovr_B 342 KIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLV 421 (445)
T ss_dssp EEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEE
T ss_pred EEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEE
Confidence 99999999999999742 123456888999888887788999999999999988865332222234555667755544
Q ss_pred EEeCCCCCe----EEEEeCCC
Q 023864 250 ANVWQVWPC----IPYAYLQA 266 (276)
Q Consensus 250 ANvw~s~d~----I~vIDp~T 266 (276)
+.+...+.. |.++|-..
T Consensus 422 la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 422 CAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEECSSSSSCCEEEEEECCC
T ss_pred EEEcccCCCCccEEEEEECCC
Confidence 333333143 88888664
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=98.40 E-value=1e-05 Score=73.16 Aligned_cols=159 Identities=10% Similarity=0.052 Sum_probs=110.0
Q ss_pred CCCceEEEEec-CCEEEEEcCCCCCCeEEEEeCCCCc-------EEEEeecCCCceEEEEEEeCC--EEEEEEeeCCEEE
Q 023864 104 RAFTQGLLYAE-NDTLFESTGLYGRSSVRRVALETGK-------VEAINQMEGSYFGEGLTLLGE--KLFQVTWLQKTGF 173 (276)
Q Consensus 104 ~aFTQGL~~~~-dg~LyeStG~yg~S~I~~iDl~tgk-------v~~~~~l~~~~FgEGit~~g~--~LyqlTwk~~~v~ 173 (276)
..-...+.|++ ++.++.+++ .+..|+.||+++++ .+....-. .---..+++..+ .++...-.++.+.
T Consensus 81 ~~~V~~~~~~p~~~~~l~s~s--~dg~v~vw~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~l~s~~~dg~i~ 157 (402)
T 2aq5_A 81 TAPVLDIAWCPHNDNVIASGS--EDCTVMVWEIPDGGLVLPLREPVITLEGH-TKRVGIVAWHPTAQNVLLSAGCDNVIL 157 (402)
T ss_dssp SSCEEEEEECTTCTTEEEEEE--TTSEEEEEECCTTCCSSCBCSCSEEEECC-SSCEEEEEECSSBTTEEEEEETTSCEE
T ss_pred CCCEEEEEeCCCCCCEEEEEe--CCCeEEEEEccCCCCccccCCceEEecCC-CCeEEEEEECcCCCCEEEEEcCCCEEE
Confidence 44567999999 777777766 67889999999983 23332211 122345666543 5666677889999
Q ss_pred EEeCCCCcEEEEEe--cCCC--CeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEE
Q 023864 174 IYDQNNLNKLEEFT--HQMK--DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEV 248 (276)
Q Consensus 174 V~D~~tlk~i~~~~--~~~~--EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~l 248 (276)
+||..+.+.+.++. .... ....+++||+.|+.+..+..|.++|+.+.+.+..+.....+. .+..+.+. +|.+
T Consensus 158 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 234 (402)
T 2aq5_A 158 VWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGT---RPVHAVFVSEGKI 234 (402)
T ss_dssp EEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSS---SCCEEEECSTTEE
T ss_pred EEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCC---cceEEEEcCCCcE
Confidence 99999999999983 2111 233466799999998888999999999999887774332222 12334454 6776
Q ss_pred EEEe---CCCCCeEEEEeCCCCcE
Q 023864 249 WANV---WQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 249 yANv---w~s~d~I~vIDp~T~~v 269 (276)
++.. -.. ..|.+.|..+++.
T Consensus 235 l~~g~~~~~d-~~i~iwd~~~~~~ 257 (402)
T 2aq5_A 235 LTTGFSRMSE-RQVALWDTKHLEE 257 (402)
T ss_dssp EEEEECTTCC-EEEEEEETTBCSS
T ss_pred EEEeccCCCC-ceEEEEcCccccC
Confidence 6555 355 7899999988664
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.40 E-value=3.8e-06 Score=82.78 Aligned_cols=158 Identities=13% Similarity=0.104 Sum_probs=102.8
Q ss_pred ceEEEE-------ecCCE-EEEEcCCCC----CCeEEEEeCCC-CcEE-----EEeecCCCceEEEEEEe--CCEEEEEE
Q 023864 107 TQGLLY-------AENDT-LFESTGLYG----RSSVRRVALET-GKVE-----AINQMEGSYFGEGLTLL--GEKLFQVT 166 (276)
Q Consensus 107 TQGL~~-------~~dg~-LyeStG~yg----~S~I~~iDl~t-gkv~-----~~~~l~~~~FgEGit~~--g~~LyqlT 166 (276)
..+|.| +++|. ||.+.-.++ ...|.+++.+. |++. +.+.-..+++ |++++ ++.||+.+
T Consensus 188 p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~--giavdp~~g~LYvtd 265 (496)
T 3kya_A 188 IRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCN--GATIHPINGELYFNS 265 (496)
T ss_dssp EEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCC--CEEECTTTCCEEEEE
T ss_pred CcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCCce--EEEEcCCCCeEEEEE
Confidence 468999 88875 998755332 23588887655 4442 2222223554 66776 48999999
Q ss_pred eeCCEEEEEeCC-------CCcE-----------EEE-EecC---CCCeeEEeeCCCEEEEEC-CCceEEEEcC--CCCc
Q 023864 167 WLQKTGFIYDQN-------NLNK-----------LEE-FTHQ---MKDGWGLATDGKVLFGSD-GSSMLYQIDP--QTLK 221 (276)
Q Consensus 167 wk~~~v~V~D~~-------tlk~-----------i~~-~~~~---~~EGWGLT~Dg~~L~vSD-GS~~L~viDp--~t~~ 221 (276)
+.++++++||++ +.+. +++ +..+ .+.|..+.+||+.||++| +.++|+.+|+ .+.+
T Consensus 266 ~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~ 345 (496)
T 3kya_A 266 YEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKE 345 (496)
T ss_dssp TTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred CCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcce
Confidence 999999999987 5543 233 3333 234566788999999999 7999999765 4443
Q ss_pred EEE-EEEeee-------CC----EeeeeeeeeEEE---------CCEEEEEeCCCCCeEEEEeCCCCc
Q 023864 222 VIR-KDIVRY-------KG----REVRNLNELEFI---------KGEVWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 222 vi~-~I~V~~-------~g----~pv~~lNELE~i---------dG~lyANvw~s~d~I~vIDp~T~~ 268 (276)
+.. ++-.+. +| -.+.++....++ +|.||++-+.. ++|.+||| +|.
T Consensus 346 ~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N-~rIr~i~~-~G~ 411 (496)
T 3kya_A 346 FITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLN-FCVRKVTP-EGI 411 (496)
T ss_dssp ECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGG-TEEEEECT-TCB
T ss_pred ecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCC-CEEEEEeC-CCC
Confidence 311 122222 12 123345544444 36899999999 99999996 554
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=98.38 E-value=4.4e-05 Score=69.96 Aligned_cols=155 Identities=15% Similarity=0.004 Sum_probs=100.8
Q ss_pred CCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEE
Q 023864 105 AFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLE 184 (276)
Q Consensus 105 aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~ 184 (276)
.....+.+ ++.++.+++ .+..|+.||+++++.+....-... --..+.+.+..+ ...-.++.+.+||..+.+.+.
T Consensus 240 ~~v~~~~~--~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~ 313 (445)
T 2ovr_B 240 AAVRCVQY--DGRRVVSGA--YDFMVKVWDPETETCLHTLQGHTN-RVYSLQFDGIHV-VSGSLDTSIRVWDVETGNCIH 313 (445)
T ss_dssp SCEEEEEE--CSSCEEEEE--TTSCEEEEEGGGTEEEEEECCCSS-CEEEEEECSSEE-EEEETTSCEEEEETTTCCEEE
T ss_pred ccEEEEEE--CCCEEEEEc--CCCEEEEEECCCCcEeEEecCCCC-ceEEEEECCCEE-EEEeCCCeEEEEECCCCCEEE
Confidence 33456666 344344444 456788888888777666543222 234555544444 444568889999999999988
Q ss_pred EEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeee-CCEeeeeeeeeEEECCEEEEEeCCCCCeEEEEe
Q 023864 185 EFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY-KGREVRNLNELEFIKGEVWANVWQVWPCIPYAY 263 (276)
Q Consensus 185 ~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~-~g~pv~~lNELE~idG~lyANvw~s~d~I~vID 263 (276)
++......-..++.+++.|+....+..|.++|..+.+.+.++.... ... .++-+.+.+..|. ..-.+ ..|.+.|
T Consensus 314 ~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~l~-s~~~d-g~v~iwd 388 (445)
T 2ovr_B 314 TLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQS---AVTCLQFNKNFVI-TSSDD-GTVKLWD 388 (445)
T ss_dssp EECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSS---CEEEEEECSSEEE-EEETT-SEEEEEE
T ss_pred EEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCC---CEEEEEECCCEEE-EEeCC-CeEEEEE
Confidence 8864333455678888888887778899999999998887775422 122 3444556444444 44456 8999999
Q ss_pred CCCCcEE
Q 023864 264 LQAFGSS 270 (276)
Q Consensus 264 p~T~~v~ 270 (276)
.++++.+
T Consensus 389 ~~~~~~~ 395 (445)
T 2ovr_B 389 LKTGEFI 395 (445)
T ss_dssp TTTCCEE
T ss_pred CCCCcee
Confidence 9997754
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=98.36 E-value=3.9e-05 Score=69.34 Aligned_cols=159 Identities=10% Similarity=-0.042 Sum_probs=109.8
Q ss_pred CCCceEEEEecCC-EEEEEcCCCCCCeEEEEeCCCCcEEEEee-cCCCceEEEEEEe-CCEEEEEEeeCCEEEEEeCCCC
Q 023864 104 RAFTQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQ-MEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNL 180 (276)
Q Consensus 104 ~aFTQGL~~~~dg-~LyeStG~yg~S~I~~iDl~tgkv~~~~~-l~~~~FgEGit~~-g~~LyqlTwk~~~v~V~D~~tl 180 (276)
......+.|++++ .++.+++ .+..|+.||+++++.+.... .+..---..+++. ++.++...-.++.+.+||..+.
T Consensus 131 ~~~v~~~~~~p~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 208 (402)
T 2aq5_A 131 TKRVGIVAWHPTAQNVLLSAG--CDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG 208 (402)
T ss_dssp SSCEEEEEECSSBTTEEEEEE--TTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTT
T ss_pred CCeEEEEEECcCCCCEEEEEc--CCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCC
Confidence 4556799999987 5776666 67789999999999887763 1222223456665 3455566668999999999999
Q ss_pred cEEEEEecC--C--CCeeEEeeCCCEEEEE---CCCceEEEEcCCCCcE-EEEEEeeeCCEeeeeeeeeEEE-CC-EEEE
Q 023864 181 NKLEEFTHQ--M--KDGWGLATDGKVLFGS---DGSSMLYQIDPQTLKV-IRKDIVRYKGREVRNLNELEFI-KG-EVWA 250 (276)
Q Consensus 181 k~i~~~~~~--~--~EGWGLT~Dg~~L~vS---DGS~~L~viDp~t~~v-i~~I~V~~~g~pv~~lNELE~i-dG-~lyA 250 (276)
+.+.++... . .....+++||+.|++. .....|.++|..+++. +....... .. .+..+.+. +| .|++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~---~v~~~~~s~~~~~l~~ 284 (402)
T 2aq5_A 209 TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDT-SS---GVLLPFFDPDTNIVYL 284 (402)
T ss_dssp EEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCC-CS---SCEEEEEETTTTEEEE
T ss_pred ceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccC-CC---ceeEEEEcCCCCEEEE
Confidence 999988322 1 1334467888888886 5688999999998765 33333221 11 24445566 34 5666
Q ss_pred EeCCCCCeEEEEeCCCCcE
Q 023864 251 NVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 251 Nvw~s~d~I~vIDp~T~~v 269 (276)
.--.+ ..|.+.|.++++.
T Consensus 285 ~g~~d-g~i~i~d~~~~~~ 302 (402)
T 2aq5_A 285 CGKGD-SSIRYFEITSEAP 302 (402)
T ss_dssp EETTC-SCEEEEEECSSTT
T ss_pred EEcCC-CeEEEEEecCCCc
Confidence 65556 8999999999773
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.34 E-value=4.1e-06 Score=79.53 Aligned_cols=117 Identities=19% Similarity=0.238 Sum_probs=90.7
Q ss_pred eEEEE--ecC-CE--EEEEcCCCCCCeEEEEeC---C----CCcEEEEeecCCCceEEEEEEeC--CEEEEEEeeCCEEE
Q 023864 108 QGLLY--AEN-DT--LFESTGLYGRSSVRRVAL---E----TGKVEAINQMEGSYFGEGLTLLG--EKLFQVTWLQKTGF 173 (276)
Q Consensus 108 QGL~~--~~d-g~--LyeStG~yg~S~I~~iDl---~----tgkv~~~~~l~~~~FgEGit~~g--~~LyqlTwk~~~v~ 173 (276)
.||++ +++ ++ +|++ + .+..+..|++ . +++++++.+++.. .|||.+++ ++||+..+..+ +.
T Consensus 131 yGlcly~~~~~g~~yafV~-~--k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq--~EgcvvDd~~g~Lyv~eEd~G-Iw 204 (355)
T 3amr_A 131 YGFTLYHSQKTGKYYAMVT-G--KEGEFEQYELKADKNGYISGKKVRAFKMNSQ--TEGMAADDEYGRLYIAEEDEA-IW 204 (355)
T ss_dssp CCEEEEECTTTCCEEEEEE-C--SSSEEEEEEEEECTTSCEEEEEEEEEECSSC--EEEEEEETTTTEEEEEETTTE-EE
T ss_pred eEEEEEecCCCCcEEEEEE-C--CCCeEEEEEEEeCCCCcccceEEEEecCCCC--cceEEEcCCCCeEEEecccce-EE
Confidence 49998 553 53 6664 3 3457777766 3 4467888899987 88999985 89999999855 89
Q ss_pred EEeCC-----CCcEEEEEecC----CCCeeEE--eeCCC-EEEEEC-CCceEEEEcCC-CCcEEEEEEeee
Q 023864 174 IYDQN-----NLNKLEEFTHQ----MKDGWGL--ATDGK-VLFGSD-GSSMLYQIDPQ-TLKVIRKDIVRY 230 (276)
Q Consensus 174 V~D~~-----tlk~i~~~~~~----~~EGWGL--T~Dg~-~L~vSD-GS~~L~viDp~-t~~vi~~I~V~~ 230 (276)
.||++ +.+++..+..+ -.||..| ++||+ +|++|+ |.+++.++|.+ +++.+.++.|+.
T Consensus 205 ~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~Ig~ 275 (355)
T 3amr_A 205 KFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFRITD 275 (355)
T ss_dssp EEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEECC
T ss_pred EEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEEecC
Confidence 99965 56777776422 3689998 56777 899999 89999999997 899999999875
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=98.34 E-value=1.3e-05 Score=71.20 Aligned_cols=163 Identities=12% Similarity=0.014 Sum_probs=107.5
Q ss_pred CCceEEEEe----cCCEE-EEEcCCCCCCeEEEEeCCC------CcEEE-----Eeec------CCCceEEEEEEeCCEE
Q 023864 105 AFTQGLLYA----ENDTL-FESTGLYGRSSVRRVALET------GKVEA-----INQM------EGSYFGEGLTLLGEKL 162 (276)
Q Consensus 105 aFTQGL~~~----~dg~L-yeStG~yg~S~I~~iDl~t------gkv~~-----~~~l------~~~~FgEGit~~g~~L 162 (276)
.....+.|+ +++.+ +.+++ .+..|+.||+.+ ++.+. ...- ........+++..+.+
T Consensus 122 ~~v~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 199 (397)
T 1sq9_A 122 HSFWALKWGASNDRLLSHRLVATD--VKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGL 199 (397)
T ss_dssp SCEEEEEEECCC----CEEEEEEE--TTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSE
T ss_pred CcEEEEEEeeccCCCCceEEEEEe--CCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCce
Confidence 566899999 88876 76666 567899999988 55433 3211 1111223566654336
Q ss_pred EEEEeeCCEEEEEeCCCCcEEEEEec-------C-CCCeeEEeeCCCEEEEECCC---ceEEEEcCCCCcEEEEEEeeeC
Q 023864 163 FQVTWLQKTGFIYDQNNLNKLEEFTH-------Q-MKDGWGLATDGKVLFGSDGS---SMLYQIDPQTLKVIRKDIVRYK 231 (276)
Q Consensus 163 yqlTwk~~~v~V~D~~tlk~i~~~~~-------~-~~EGWGLT~Dg~~L~vSDGS---~~L~viDp~t~~vi~~I~V~~~ 231 (276)
+...-.++.+.+||..+.+.+.++.. . .-....+++||+.|+++..+ ..|.++|..+.+.+..+.....
T Consensus 200 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~ 279 (397)
T 1sq9_A 200 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTH 279 (397)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--
T ss_pred EEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcc
Confidence 66666889999999999999998875 3 11233466799999887666 8999999999998887765110
Q ss_pred CE--------eeeeeeeeEEE-CCEEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 232 GR--------EVRNLNELEFI-KGEVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 232 g~--------pv~~lNELE~i-dG~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
.. .-..++-+.+. +|..++....+ ..|.+.|.++++.+
T Consensus 280 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~ 326 (397)
T 1sq9_A 280 SSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD-GKLRFWDVKTKERI 326 (397)
T ss_dssp ------CCBSBSSCEEEEEECSSSSEEEEEETT-SEEEEEETTTTEEE
T ss_pred cccccccccccCCcEEEEEECCCCCEEEEEeCC-CeEEEEEcCCCcee
Confidence 00 01234556676 56555555566 89999999996543
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=98.34 E-value=0.00011 Score=65.52 Aligned_cols=168 Identities=10% Similarity=0.077 Sum_probs=115.1
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEEEEEeeCCEE
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTG 172 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~LyqlTwk~~~v 172 (276)
++..++.. .......+.|.+++.|+. ++ ++..|+.||+++++.+....-... --..+++.. +++++..-.++.+
T Consensus 134 ~~~~~~~~-h~~~v~~~~~~~~~~l~s-~s--~d~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~sg~~d~~v 208 (340)
T 1got_B 134 RVSRELAG-HTGYLSCCRFLDDNQIVT-SS--GDTTCALWDIETGQQTTTFTGHTG-DVMSLSLAPDTRLFVSGACDASA 208 (340)
T ss_dssp EEEEEEEC-CSSCEEEEEEEETTEEEE-EE--TTSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCE
T ss_pred eeEEEecC-CCccEEEEEECCCCcEEE-EE--CCCcEEEEECCCCcEEEEEcCCCC-ceEEEEECCCCCEEEEEeCCCcE
Confidence 45555543 345667899998888663 44 578899999999988776542222 234566653 5677777789999
Q ss_pred EEEeCCCCcEEEEEecCCC--CeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEE
Q 023864 173 FIYDQNNLNKLEEFTHQMK--DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVW 249 (276)
Q Consensus 173 ~V~D~~tlk~i~~~~~~~~--EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~ly 249 (276)
.+||..+.+.+.++.-... ....+++||+.|+....+..|.++|..+.+.+....... ....++.+.+. +|.+.
T Consensus 209 ~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~---~~~~v~~~~~s~~g~~l 285 (340)
T 1got_B 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN---IICGITSVSFSKSGRLL 285 (340)
T ss_dssp EEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT---CCSCEEEEEECTTSSEE
T ss_pred EEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCC---cccceEEEEECCCCCEE
Confidence 9999999999888863211 234467899998887778899999999987765543221 11234445565 56666
Q ss_pred EEeCCCCCeEEEEeCCCCcEE
Q 023864 250 ANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 250 ANvw~s~d~I~vIDp~T~~v~ 270 (276)
+.-..+ ..|.+-|..+++..
T Consensus 286 ~~g~~d-~~i~vwd~~~~~~~ 305 (340)
T 1got_B 286 LAGYDD-FNCNVWDALKADRA 305 (340)
T ss_dssp EEEETT-SEEEEEETTTCCEE
T ss_pred EEECCC-CeEEEEEcccCcEe
Confidence 665566 78999998886543
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=98.33 E-value=3.1e-05 Score=72.97 Aligned_cols=158 Identities=13% Similarity=0.069 Sum_probs=107.8
Q ss_pred CceEEEE---ecCCEEEEEcC---------C--CCCCeEEEEeCC---CCcEEEEeecCC-----------Cc-eEEEEE
Q 023864 106 FTQGLLY---AENDTLFESTG---------L--YGRSSVRRVALE---TGKVEAINQMEG-----------SY-FGEGLT 156 (276)
Q Consensus 106 FTQGL~~---~~dg~LyeStG---------~--yg~S~I~~iDl~---tgkv~~~~~l~~-----------~~-FgEGit 156 (276)
...||.+ +++|+||.... . -|.+.|.+||+. |++++..+.|.. .+ .+.+++
T Consensus 64 ~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDva 143 (334)
T 2p9w_A 64 QMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSA 143 (334)
T ss_dssp EEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEE
T ss_pred eeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeE
Confidence 3469999 68899987421 0 146889999999 999888777641 33 478999
Q ss_pred EeC-CEEEEEEeeC-CEEEEEeCCCCcEEEEEecCC--------CCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEE
Q 023864 157 LLG-EKLFQVTWLQ-KTGFIYDQNNLNKLEEFTHQM--------KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKD 226 (276)
Q Consensus 157 ~~g-~~LyqlTwk~-~~v~V~D~~tlk~i~~~~~~~--------~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I 226 (276)
++. +.+|+..-.. +.++.+|++..+. ..+-... .-|..+++||+.|++.++..+|+.+|..+... ..|
T Consensus 144 vD~~GnaYVt~s~~~~~I~rV~pdG~~~-~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~-~~v 221 (334)
T 2p9w_A 144 QDRDGNSYVAFALGMPAIARVSADGKTV-STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYA-WPE 221 (334)
T ss_dssp ECTTSCEEEEEEESSCEEEEECTTSCCE-EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSC-CCE
T ss_pred ECCCCCEEEeCCCCCCeEEEEeCCCCEE-eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcc-eee
Confidence 985 7999999899 9999999986643 3332111 34888899999999999999999999884321 135
Q ss_pred EeeeCC--Eeeeeeeee-EE-ECCEE-EEEeCCCCCeEEEEeCCC
Q 023864 227 IVRYKG--REVRNLNEL-EF-IKGEV-WANVWQVWPCIPYAYLQA 266 (276)
Q Consensus 227 ~V~~~g--~pv~~lNEL-E~-idG~l-yANvw~s~d~I~vIDp~T 266 (276)
.+...| .....+.-| -. .+|++ ++..... +.+++-+...
T Consensus 222 ~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~-~~~~l~S~Dg 265 (334)
T 2p9w_A 222 PVKINGDFGTLSGTEKIVTVPVGNESVLVGARAP-YAISFRSWDN 265 (334)
T ss_dssp ECEESSCCCCCTTEEEEEEEEETTEEEEEEEETT-EEEEEECSST
T ss_pred cccccCCcccccCcccccccccCCEEEEEEcCCC-CEEEEECCCC
Confidence 553212 122333333 11 47875 7777655 5555555443
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=98.33 E-value=7.4e-05 Score=66.90 Aligned_cols=164 Identities=10% Similarity=0.070 Sum_probs=111.9
Q ss_pred EEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC--CceEEEEEE---------------
Q 023864 95 VVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG--SYFGEGLTL--------------- 157 (276)
Q Consensus 95 Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~--~~FgEGit~--------------- 157 (276)
.+.++.. .......+.|++|+.++.+++ .+..|+.||+.+++.+....... ...-..+++
T Consensus 173 ~~~~~~~-h~~~v~~~~~~~~~~~l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 249 (420)
T 3vl1_A 173 NPRTLIG-HRATVTDIAIIDRGRNVLSAS--LDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSK 249 (420)
T ss_dssp CCEEEEC-CSSCEEEEEEETTTTEEEEEE--TTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCC
T ss_pred CceEEcC-CCCcEEEEEEcCCCCEEEEEc--CCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCc
Confidence 3445542 245568999999987666666 67789999999999888775431 111122222
Q ss_pred -------eCCEEEEEEeeCCEEEEEeCCCCcEEEEEecCC-CC--eeEEeeCCC-EEEEECCCceEEEEcCCCCcE-EEE
Q 023864 158 -------LGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQM-KD--GWGLATDGK-VLFGSDGSSMLYQIDPQTLKV-IRK 225 (276)
Q Consensus 158 -------~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~-~E--GWGLT~Dg~-~L~vSDGS~~L~viDp~t~~v-i~~ 225 (276)
.++++....-.++.+.+||..+.+.+.++.... .. ...+++||+ .|+....+..|.++|..+.+. +..
T Consensus 250 v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~ 329 (420)
T 3vl1_A 250 KNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGE 329 (420)
T ss_dssp CCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEE
T ss_pred ccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhh
Confidence 135566666778999999999999988886431 12 233567888 777777788999999998754 555
Q ss_pred EEeeeCCEeeeeeeeeEEECCEEEEEeCCCCCeEEEEeCCC
Q 023864 226 DIVRYKGREVRNLNELEFIKGEVWANVWQVWPCIPYAYLQA 266 (276)
Q Consensus 226 I~V~~~g~pv~~lNELE~idG~lyANvw~s~d~I~vIDp~T 266 (276)
+... .+.+ ++-+.+.+|.++|..-.+ ..|.+-|..+
T Consensus 330 ~~~~-~~~~---v~~~~~~~~~~l~s~~~d-~~v~iw~~~~ 365 (420)
T 3vl1_A 330 FLIN-EGTP---INNVYFAAGALFVSSGFD-TSIKLDIISD 365 (420)
T ss_dssp EEES-TTSC---EEEEEEETTEEEEEETTT-EEEEEEEECC
T ss_pred hhcc-CCCC---ceEEEeCCCCEEEEecCC-ccEEEEeccC
Confidence 5442 2333 344457788877777666 7888888765
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=98.33 E-value=2.1e-05 Score=73.13 Aligned_cols=157 Identities=16% Similarity=0.088 Sum_probs=97.0
Q ss_pred CCceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeC--CEEEEEeCCCCc
Q 023864 105 AFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ--KTGFIYDQNNLN 181 (276)
Q Consensus 105 aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~--~~v~V~D~~tlk 181 (276)
.....+.|+|||+ |+.++..-+...|..||+++|+.......+....+-.+..++++|+.....+ ..++++|.++.+
T Consensus 179 ~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~ 258 (415)
T 2hqs_A 179 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ 258 (415)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred CcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC
Confidence 4557899999986 4333322245799999999998765444444433333333456677565543 459999999877
Q ss_pred EEEEEe-cC-CCCeeEEeeCCCEEEE-EC--CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CC-EEEEEeCC
Q 023864 182 KLEEFT-HQ-MKDGWGLATDGKVLFG-SD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVWANVWQ 254 (276)
Q Consensus 182 ~i~~~~-~~-~~EGWGLT~Dg~~L~v-SD--GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG-~lyANvw~ 254 (276)
. .++. .. ......+++||+.|+. ++ |..+|+++|.++.+... +...+. ....+.+. || +|+.....
T Consensus 259 ~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~---l~~~~~---~~~~~~~spdG~~l~~~~~~ 331 (415)
T 2hqs_A 259 I-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR---ITWEGS---QNQDADVSSDGKFMVMVSSN 331 (415)
T ss_dssp E-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE---CCCSSS---EEEEEEECTTSSEEEEEEEC
T ss_pred E-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEE---EecCCC---cccCeEECCCCCEEEEEECc
Confidence 6 3332 21 1123346789997765 54 46699999999887532 222222 23344554 55 45544433
Q ss_pred --CCCeEEEEeCCCCcE
Q 023864 255 --VWPCIPYAYLQAFGS 269 (276)
Q Consensus 255 --s~d~I~vIDp~T~~v 269 (276)
. ..|.++|+++++.
T Consensus 332 ~g~-~~i~~~d~~~~~~ 347 (415)
T 2hqs_A 332 GGQ-QHIAKQDLATGGV 347 (415)
T ss_dssp SSC-EEEEEEETTTCCE
T ss_pred CCc-eEEEEEECCCCCE
Confidence 3 4899999999775
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=98.33 E-value=3.9e-05 Score=75.05 Aligned_cols=164 Identities=9% Similarity=-0.034 Sum_probs=112.1
Q ss_pred EEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEEEEEeeCCEEE
Q 023864 95 VVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGF 173 (276)
Q Consensus 95 Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~LyqlTwk~~~v~ 173 (276)
+.+++.. ......++.|+|||.++.+++ .+..|+.||.++|+.+......... -.++++.. ++..+....++.+.
T Consensus 5 ~~~~~~~-h~~~v~~i~~sp~~~~la~~~--~~g~v~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~dg~i~ 80 (814)
T 3mkq_A 5 IKKTFSN-RSDRVKGIDFHPTEPWVLTTL--YSGRVEIWNYETQVEVRSIQVTETP-VRAGKFIARKNWIIVGSDDFRIR 80 (814)
T ss_dssp CEEEEEE-ECSCEEEEEECSSSSEEEEEE--TTSEEEEEETTTTEEEEEEECCSSC-EEEEEEEGGGTEEEEEETTSEEE
T ss_pred cceeeec-CCCceEEEEECCCCCEEEEEe--CCCEEEEEECCCCceEEEEecCCCc-EEEEEEeCCCCEEEEEeCCCeEE
Confidence 3444432 244568999999988766555 5678999999999988877644332 23555543 34444555689999
Q ss_pred EEeCCCCcEEEEEecCCCC--eeEEeeCCCEEEEECCCceEEEEcCCCC-cEEEEEEeeeCCEeeeeeeeeEEE--CCEE
Q 023864 174 IYDQNNLNKLEEFTHQMKD--GWGLATDGKVLFGSDGSSMLYQIDPQTL-KVIRKDIVRYKGREVRNLNELEFI--KGEV 248 (276)
Q Consensus 174 V~D~~tlk~i~~~~~~~~E--GWGLT~Dg~~L~vSDGS~~L~viDp~t~-~vi~~I~V~~~g~pv~~lNELE~i--dG~l 248 (276)
+||..+.+.+.++...... ...+++||+.|+.+..+..|.++|.++. +....+.-. .. .+.-+.|. +|..
T Consensus 81 vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~--~~---~v~~~~~~p~~~~~ 155 (814)
T 3mkq_A 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGH--EH---FVMCVAFNPKDPST 155 (814)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECC--SS---CEEEEEEETTEEEE
T ss_pred EEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCC--CC---cEEEEEEEcCCCCE
Confidence 9999999999998743122 2346689999998887889999999887 443333322 12 34455676 4566
Q ss_pred EEEeCCCCCeEEEEeCCCCc
Q 023864 249 WANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 249 yANvw~s~d~I~vIDp~T~~ 268 (276)
++..-.+ ..|.+.|..+++
T Consensus 156 l~~~~~d-g~v~vwd~~~~~ 174 (814)
T 3mkq_A 156 FASGCLD-RTVKVWSLGQST 174 (814)
T ss_dssp EEEEETT-SEEEEEETTCSS
T ss_pred EEEEeCC-CeEEEEECCCCc
Confidence 6666566 888888887754
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.2e-05 Score=69.33 Aligned_cols=171 Identities=9% Similarity=0.008 Sum_probs=106.4
Q ss_pred eEEEEEEecCCCCCceEEEEecCCE-EEEEcCCCCCCeEEEEeC----CCCc------EEEEeec--CC-------CceE
Q 023864 93 IQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVAL----ETGK------VEAINQM--EG-------SYFG 152 (276)
Q Consensus 93 ~~Vv~~~Phd~~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl----~tgk------v~~~~~l--~~-------~~Fg 152 (276)
.++++...|.... ..+.|+|+|. ++.+++ .+..|+.||+ ++++ ......- .. .---
T Consensus 36 ~~~~~~~~~~~~v--~~~~~s~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 111 (425)
T 1r5m_A 36 VKILKEIVKLDNI--VSSTWNPLDESILAYGE--KNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQV 111 (425)
T ss_dssp CEECEEEEECSCC--SEEEECSSCTTEEEEEE--TBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCE
T ss_pred hhheeeeeccCce--EEEEECCCCCcEEEEec--CCceEEEEEEecccCCccccccccccccccccccccccccCCCCce
Confidence 3566777774444 5999999988 777666 6789999999 9988 3333322 11 1122
Q ss_pred EEEEEeC-CEEEEEEeeCCEEEEEeCCCCcEEEEEecCCC--CeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEee
Q 023864 153 EGLTLLG-EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMK--DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVR 229 (276)
Q Consensus 153 EGit~~g-~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~--EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~ 229 (276)
..+++.. ++++...-.++.+.+|| .+.+.+..+..... ....+++|++.|+.......|.++|.++.+.+..+...
T Consensus 112 ~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 190 (425)
T 1r5m_A 112 TCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELK 190 (425)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeecc
Confidence 3455542 44555555688999999 67778888763312 23346679999999888889999999999988877665
Q ss_pred eCCEee----------eeeeeeEEECCEEEEEeCCCCCeEEEEeCCCCcE
Q 023864 230 YKGREV----------RNLNELEFIKGEVWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 230 ~~g~pv----------~~lNELE~idG~lyANvw~s~d~I~vIDp~T~~v 269 (276)
...... ..+..+.+.++..++..-.. ..|.+.|.++++.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~i~~~d~~~~~~ 239 (425)
T 1r5m_A 191 ETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK-GAIFVYQITEKTP 239 (425)
T ss_dssp ---------------CCCBSCCEEEETTEEEEECGG-GCEEEEETTCSSC
T ss_pred ccCccceeeccccCCcceeeEEEEcCCCEEEEEcCC-CeEEEEEcCCCce
Confidence 422100 00444555544334444455 7888888887553
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00015 Score=66.47 Aligned_cols=163 Identities=11% Similarity=0.044 Sum_probs=110.7
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEE
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGF 173 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~ 173 (276)
+.+.+++. ...-...+.+ ++.++.+++ .+..|++||+++++.+....-... --..++..++.+ +..-.++.+.
T Consensus 164 ~~~~~~~~-h~~~v~~l~~--~~~~l~sg~--~dg~i~vwd~~~~~~~~~~~~h~~-~v~~l~~~~~~l-~s~s~dg~i~ 236 (435)
T 1p22_A 164 ECKRILTG-HTGSVLCLQY--DERVIITGS--SDSTVRVWDVNTGEMLNTLIHHCE-AVLHLRFNNGMM-VTCSKDRSIA 236 (435)
T ss_dssp CEEEEECC-CSSCEEEEEC--CSSEEEEEE--TTSCEEEEESSSCCEEEEECCCCS-CEEEEECCTTEE-EEEETTSCEE
T ss_pred eEEEEEcC-CCCcEEEEEE--CCCEEEEEc--CCCeEEEEECCCCcEEEEEcCCCC-cEEEEEEcCCEE-EEeeCCCcEE
Confidence 45566652 2344567777 455555555 678999999999998877654332 234566666644 4445789999
Q ss_pred EEeCCCCcEEE---EEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEE
Q 023864 174 IYDQNNLNKLE---EFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWA 250 (276)
Q Consensus 174 V~D~~tlk~i~---~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyA 250 (276)
+||..+.+.+. .+.-....-..++.|++.|+....+..|.++|.++++.+.++.-.. . .+.-+.+.++.+++
T Consensus 237 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~---~v~~~~~~~~~l~~ 311 (435)
T 1p22_A 237 VWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK--R---GIACLQYRDRLVVS 311 (435)
T ss_dssp EEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCS--S---CEEEEEEETTEEEE
T ss_pred EEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEcCCC--C---cEEEEEeCCCEEEE
Confidence 99998887653 2321123445678899999998888999999999999988876432 2 23445565555554
Q ss_pred EeCCCCCeEEEEeCCCCcEE
Q 023864 251 NVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 251 Nvw~s~d~I~vIDp~T~~v~ 270 (276)
.- .+ +.|.+.|.++++.+
T Consensus 312 g~-~d-g~i~iwd~~~~~~~ 329 (435)
T 1p22_A 312 GS-SD-NTIRLWDIECGACL 329 (435)
T ss_dssp EE-TT-SCEEEEETTTCCEE
T ss_pred Ee-CC-CeEEEEECCCCCEE
Confidence 43 56 89999999997654
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=98.31 E-value=9.7e-05 Score=71.67 Aligned_cols=167 Identities=16% Similarity=0.125 Sum_probs=117.4
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeec------CCCceEEEEEEeC-CEEEEEE
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM------EGSYFGEGLTLLG-EKLFQVT 166 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l------~~~~FgEGit~~g-~~LyqlT 166 (276)
+.+.++.. ....+..+.|+|||+++.+++ .+..|+.||..+|+.+....- +..---.++++.. ++.....
T Consensus 181 ~~~~~l~~-H~~~V~~v~fspdg~~las~s--~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~ 257 (611)
T 1nr0_A 181 KFKSTFGE-HTKFVHSVRYNPDGSLFASTG--GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA 257 (611)
T ss_dssp EEEEEECC-CSSCEEEEEECTTSSEEEEEE--TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEE
T ss_pred eEeeeecc-ccCceEEEEECCCCCEEEEEE--CCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEE
Confidence 45556642 356788999999999888887 788999999999988766532 2222334666653 4445555
Q ss_pred eeCCEEEEEeCCCCcEEEEEecC---CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEE
Q 023864 167 WLQKTGFIYDQNNLNKLEEFTHQ---MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEF 243 (276)
Q Consensus 167 wk~~~v~V~D~~tlk~i~~~~~~---~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~ 243 (276)
-.++++.++|..+.+.+.+++.+ ....+++..+++.|+.......+.++|+++.+..+.+. |+. ..++-+.+
T Consensus 258 s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~----gh~-~~v~~l~~ 332 (611)
T 1nr0_A 258 SADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRY----GHN-KAITALSS 332 (611)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEEC----CCS-SCEEEEEE
T ss_pred eCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEc----CCC-CCEEEEEE
Confidence 67899999999999999998753 12456677788888776677889999999887544332 221 23455566
Q ss_pred E-CCEEEEEeCCCCCeEEEEeCCCCcE
Q 023864 244 I-KGEVWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 244 i-dG~lyANvw~s~d~I~vIDp~T~~v 269 (276)
. ||+..|..-.+ ..|.+-|.++++.
T Consensus 333 spdg~~l~s~s~D-~~v~~Wd~~~~~~ 358 (611)
T 1nr0_A 333 SADGKTLFSADAE-GHINSWDISTGIS 358 (611)
T ss_dssp CTTSSEEEEEETT-SCEEEEETTTCCE
T ss_pred eCCCCEEEEEeCC-CcEEEEECCCCce
Confidence 5 56655555566 8899999888654
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=98.31 E-value=6.8e-06 Score=74.48 Aligned_cols=157 Identities=11% Similarity=0.042 Sum_probs=110.7
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeCCEEEEEeCCCCc
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLN 181 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~~~v~V~D~~tlk 181 (276)
...+..+.|++||+++.+++ .+..|+.||+++++.+....-... .-..+++. ++.+++..-.++.+.+||..+.+
T Consensus 139 ~~~V~~v~~spdg~~l~sgs--~dg~v~iwd~~~~~~~~~~~~h~~-~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~ 215 (357)
T 4g56_B 139 DDIVKTLSVFSDGTQAVSGG--KDFSVKVWDLSQKAVLKSYNAHSS-EVNCVAACPGKDTIFLSCGEDGRILLWDTRKPK 215 (357)
T ss_dssp SSCEEEEEECSSSSEEEEEE--TTSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTCSSCEEEEETTSCEEECCTTSSS
T ss_pred CCCEEEEEECCCCCEEEEEe--CCCeEEEEECCCCcEEEEEcCCCC-CEEEEEEccCCCceeeeeccCCceEEEECCCCc
Confidence 45567999999998777777 678899999999998877654332 22355554 45677778889999999999998
Q ss_pred EEEEEecCCCC--eeE--EeeCCCEEE-EECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CC-EEEEEeCC
Q 023864 182 KLEEFTHQMKD--GWG--LATDGKVLF-GSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVWANVWQ 254 (276)
Q Consensus 182 ~i~~~~~~~~E--GWG--LT~Dg~~L~-vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG-~lyANvw~ 254 (276)
.+..+.....+ -.. +.||+..++ ....+..|.++|..+.+.++++.... ..++-|.+. +| ++.|..-.
T Consensus 216 ~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~-----~~v~~l~~sp~~~~~lasgs~ 290 (357)
T 4g56_B 216 PATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHS-----QNITGLAYSYHSSPFLASISE 290 (357)
T ss_dssp CBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCS-----SCEEEEEECSSSSCCEEEEET
T ss_pred eeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccc-----eeEEEEEEcCCCCCEEEEEeC
Confidence 88776543112 223 456765544 45567889999999998877765433 234556664 44 56666655
Q ss_pred CCCeEEEEeCCCCcE
Q 023864 255 VWPCIPYAYLQAFGS 269 (276)
Q Consensus 255 s~d~I~vIDp~T~~v 269 (276)
+ ..|.+-|.++++.
T Consensus 291 D-~~i~iwd~~~~~~ 304 (357)
T 4g56_B 291 D-CTVAVLDADFSEV 304 (357)
T ss_dssp T-SCEEEECTTSCEE
T ss_pred C-CEEEEEECCCCcE
Confidence 6 7899999998653
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=2.9e-05 Score=71.50 Aligned_cols=158 Identities=9% Similarity=0.053 Sum_probs=114.6
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEEEEEeeCCEEEEEeCCCCcE
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNK 182 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~LyqlTwk~~~v~V~D~~tlk~ 182 (276)
..-+..+.|+|++.++.+++ .+..|++||+++++......-... .-..+++.. +++....-.++++.+||..+.+.
T Consensus 108 ~~~V~~~~~~p~~~~l~s~s--~Dg~i~vwd~~~~~~~~~l~~h~~-~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~ 184 (410)
T 1vyh_C 108 RSPVTRVIFHPVFSVMVSAS--EDATIKVWDYETGDFERTLKGHTD-SVQDISFDHSGKLLASCSADMTIKLWDFQGFEC 184 (410)
T ss_dssp SSCEEEEEECSSSSEEEEEE--SSSCEEEEETTTCCCCEEECCCSS-CEEEEEECTTSSEEEEEETTSCCCEEETTSSCE
T ss_pred CCcEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCcEEEEEeccCC-cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Confidence 44567899999988888777 778999999999988776543322 234566653 45666666789999999999999
Q ss_pred EEEEecCCC--CeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCCCCCeE
Q 023864 183 LEEFTHQMK--DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQVWPCI 259 (276)
Q Consensus 183 i~~~~~~~~--EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~s~d~I 259 (276)
+.++.-... ....+.+||+.|+....+..|.++|.++.+.++++.-.. . .++-+.+. +|.++|..-.+ ..|
T Consensus 185 ~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~--~---~v~~~~~~~~g~~l~s~s~D-~~v 258 (410)
T 1vyh_C 185 IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR--E---WVRMVRPNQDGTLIASCSND-QTV 258 (410)
T ss_dssp EECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS--S---CEEEEEECTTSSEEEEEETT-SCE
T ss_pred eEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCC--c---cEEEEEECCCCCEEEEEcCC-CeE
Confidence 888753211 234467899999887788999999999998877765322 1 23334444 56777777667 899
Q ss_pred EEEeCCCCcEE
Q 023864 260 PYAYLQAFGSS 270 (276)
Q Consensus 260 ~vIDp~T~~v~ 270 (276)
.+.|..+++..
T Consensus 259 ~vwd~~~~~~~ 269 (410)
T 1vyh_C 259 RVWVVATKECK 269 (410)
T ss_dssp EEEETTTCCEE
T ss_pred EEEECCCCcee
Confidence 99999986643
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.30 E-value=5.6e-05 Score=69.65 Aligned_cols=158 Identities=12% Similarity=0.162 Sum_probs=99.6
Q ss_pred eeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecC----CCceEEEEEEeCC-----E
Q 023864 91 YTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME----GSYFGEGLTLLGE-----K 161 (276)
Q Consensus 91 ~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~----~~~FgEGit~~g~-----~ 161 (276)
++++++.+ .-....|++|++||+||++.- . ..|.+++ +|+......++ ..-...||+++.+ .
T Consensus 21 ~~~~~va~----~l~~P~~ia~~pdG~l~V~e~--~-g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~ 91 (352)
T 2ism_A 21 LRVEEVVG----GLEVPWALAFLPDGGMLIAER--P-GRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPY 91 (352)
T ss_dssp CCEEEEEC----CCSCEEEEEECTTSCEEEEET--T-TEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCE
T ss_pred cEEEEEEC----CCCCceEEEEcCCCeEEEEeC--C-CeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCE
Confidence 35555554 122345999999999998754 2 7899999 55532222222 2335679999865 9
Q ss_pred EEEEEeeC-----CEEEEEeCCCC-----cE-EEEEec--C---CCCeeEEeeCCCEEEEECCC--------------ce
Q 023864 162 LFQVTWLQ-----KTGFIYDQNNL-----NK-LEEFTH--Q---MKDGWGLATDGKVLFGSDGS--------------SM 211 (276)
Q Consensus 162 LyqlTwk~-----~~v~V~D~~tl-----k~-i~~~~~--~---~~EGWGLT~Dg~~L~vSDGS--------------~~ 211 (276)
||+..... +++..++.+.- +. +..++. . .+.+..+.+|| +||+++|+ .+
T Consensus 92 lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G~~~~~~~~~d~~~~~g~ 170 (352)
T 2ism_A 92 VYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTGEVYERELAQDLASLGGK 170 (352)
T ss_dssp EEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECCCTTCGGGGGCTTCSSSE
T ss_pred EEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEECCCCCCccccCCCCCceE
Confidence 99998865 78999987642 22 233552 1 23456677888 79999874 36
Q ss_pred EEEEcCCCCcE-------------EEEEEeeeCCEeeeeeeeeEEE--CCEEEEEeCCCCC--------eEEEEeCC
Q 023864 212 LYQIDPQTLKV-------------IRKDIVRYKGREVRNLNELEFI--KGEVWANVWQVWP--------CIPYAYLQ 265 (276)
Q Consensus 212 L~viDp~t~~v-------------i~~I~V~~~g~pv~~lNELE~i--dG~lyANvw~s~d--------~I~vIDp~ 265 (276)
|..+|++. ++ ...+.. -..+++.|.+. +|+||++.... + .|-+|.+.
T Consensus 171 I~ri~~dG-~~p~~npf~~~~~~~~~i~a~-----G~rnp~g~a~d~~~g~l~v~d~g~-~~~~~~~~dei~~i~~G 240 (352)
T 2ism_A 171 ILRLTPEG-EPAPGNPFLGRRGARPEVYSL-----GHRNPQGLAWHPKTGELFSSEHGP-SGEQGYGHDEVNLIVPG 240 (352)
T ss_dssp EEEECTTS-SBCTTCTTTTCTTSCTTEEEE-----CCSEECCCEECTTTCCEEEEEECC-------CCCEEEEECTT
T ss_pred EEEEcCCC-CCCCCCcccCCCCCCccEEEE-----cCCCcccEEEECCCCCEEEEEcCC-CCCCCCCCeEEEEeccC
Confidence 78888763 11 000111 13477888887 57899776655 4 47777653
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.29 E-value=3.5e-05 Score=70.12 Aligned_cols=164 Identities=10% Similarity=0.047 Sum_probs=111.5
Q ss_pred eEEEEEEecCCCCCceEEEEecCC-EEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC-CceEEEEEEe--CCEEEEEEee
Q 023864 93 IQVVNEFPHDPRAFTQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEG-SYFGEGLTLL--GEKLFQVTWL 168 (276)
Q Consensus 93 ~~Vv~~~Phd~~aFTQGL~~~~dg-~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~-~~FgEGit~~--g~~LyqlTwk 168 (276)
-+.+.++.. ....+..+.|++++ .++.|++ .+..|+.||+.+++...+..... ......+++. ++++++..-.
T Consensus 159 ~~~~~~~~~-h~~~V~~~~~~~~~~~~l~s~s--~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~ 235 (344)
T 4gqb_B 159 QVVLSSYRA-HAAQVTCVAASPHKDSVFLSCS--EDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE 235 (344)
T ss_dssp TEEEEEECC-CSSCEEEEEECSSCTTEEEEEE--TTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET
T ss_pred CcEEEEEcC-cCCceEEEEecCCCCCceeeec--cccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc
Confidence 356666652 35566799999886 4777777 67899999999999877764432 2334566664 4677777788
Q ss_pred CCEEEEEeCCCCcEEEEEecCCC--CeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-
Q 023864 169 QKTGFIYDQNNLNKLEEFTHQMK--DGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI- 244 (276)
Q Consensus 169 ~~~v~V~D~~tlk~i~~~~~~~~--EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i- 244 (276)
++.+.+||..+.+.+.++..... ....+++||..+++|- .+.+|.++|.++.++.+. .|+. ..++-+.|.
T Consensus 236 dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~-----~~H~-~~V~~v~~sp 309 (344)
T 4gqb_B 236 NGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS-----QAHR-DFVRDATWSP 309 (344)
T ss_dssp TSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEE-----CCCS-SCEEEEEECS
T ss_pred CCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEE-----cCCC-CCEEEEEEeC
Confidence 99999999999999999874312 2334568887666543 467899999999876532 2221 245666775
Q ss_pred CC-EEEEEeCCCCCeEEEEeCCC
Q 023864 245 KG-EVWANVWQVWPCIPYAYLQA 266 (276)
Q Consensus 245 dG-~lyANvw~s~d~I~vIDp~T 266 (276)
+| ++.|..-.+ ..|.+=+..+
T Consensus 310 ~~~~llas~s~D-~~v~~w~v~~ 331 (344)
T 4gqb_B 310 LNHSLLTTVGWD-HQVVHHVVPT 331 (344)
T ss_dssp SSTTEEEEEETT-SCEEEEECCC
T ss_pred CCCeEEEEEcCC-CeEEEEECCC
Confidence 44 588877666 7887777665
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=4e-05 Score=75.53 Aligned_cols=160 Identities=9% Similarity=0.074 Sum_probs=107.3
Q ss_pred ceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCc----eEEEEEEeCCEEEEEEee-----CCEEEEEeC
Q 023864 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSY----FGEGLTLLGEKLFQVTWL-----QKTGFIYDQ 177 (276)
Q Consensus 107 TQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~----FgEGit~~g~~LyqlTwk-----~~~v~V~D~ 177 (276)
..|+.+. ++++|..+. +..|..+|.+||+++-+.+++... +...-++.++++|+.+.. ++.++.+|+
T Consensus 108 ~~~~~~~-~~~v~v~~~---dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~ 183 (571)
T 2ad6_A 108 DRGLAYG-AGQIVKKQA---NGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDL 183 (571)
T ss_dssp CCCCEEE-TTEEEEECT---TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEET
T ss_pred ccccEEE-CCEEEEEeC---CCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEEC
Confidence 3577887 589998754 568999999999998888776521 111224568999998875 689999999
Q ss_pred CCCcEEEEEecCCCC-------------------------------------ee---EEeeCCCEEEEECCC--------
Q 023864 178 NNLNKLEEFTHQMKD-------------------------------------GW---GLATDGKVLFGSDGS-------- 209 (276)
Q Consensus 178 ~tlk~i~~~~~~~~E-------------------------------------GW---GLT~Dg~~L~vSDGS-------- 209 (276)
+|.+++-++....+. -| .+.++...+|+..|.
T Consensus 184 ~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~ 263 (571)
T 2ad6_A 184 KTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETM 263 (571)
T ss_dssp TTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGG
T ss_pred CCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCc
Confidence 999999998753111 01 234455788887642
Q ss_pred --------ceEEEEcCCCCcEEEEEEeeeCCE-eeeeeeeeEE----ECCE---EEEEeCCCCCeEEEEeCCCCcEEE
Q 023864 210 --------SMLYQIDPQTLKVIRKDIVRYKGR-EVRNLNELEF----IKGE---VWANVWQVWPCIPYAYLQAFGSSL 271 (276)
Q Consensus 210 --------~~L~viDp~t~~vi~~I~V~~~g~-pv~~lNELE~----idG~---lyANvw~s~d~I~vIDp~T~~v~l 271 (276)
+.|+.+|++|++++-+.++..+.. .....++... +||+ +++-.=.. ..+.+||++||+++-
T Consensus 264 ~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~-G~l~~lD~~tG~~~w 340 (571)
T 2ad6_A 264 RPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRN-GILYTLNRENGNLIV 340 (571)
T ss_dssp SCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTT-SEEEEEETTTCCEEE
T ss_pred cCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCC-cEEEEEECCCCCEEe
Confidence 369999999999987776642100 0001122222 3673 43333234 699999999988753
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=98.29 E-value=4.7e-05 Score=69.24 Aligned_cols=162 Identities=12% Similarity=0.056 Sum_probs=102.6
Q ss_pred CCCCCceEEEEecCCEE-EEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCC
Q 023864 102 DPRAFTQGLLYAENDTL-FESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNL 180 (276)
Q Consensus 102 d~~aFTQGL~~~~dg~L-yeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tl 180 (276)
+...++..+.|+|||++ ...+|. .+..|+.||+++++.+....-..... .+++..+--+.++--++.+.+++..+.
T Consensus 131 ~~~~~~~~v~fSpDg~~la~as~~-~d~~i~iwd~~~~~~~~~~~~~~~V~--~v~fspdg~~l~s~s~~~~~~~~~~~~ 207 (365)
T 4h5i_A 131 NADDYTKLVYISREGTVAAIASSK-VPAIMRIIDPSDLTEKFEIETRGEVK--DLHFSTDGKVVAYITGSSLEVISTVTG 207 (365)
T ss_dssp CTTCCEEEEEECTTSSCEEEEESC-SSCEEEEEETTTTEEEEEEECSSCCC--EEEECTTSSEEEEECSSCEEEEETTTC
T ss_pred CcccCEEEEEEcCCCCEEEEEECC-CCCEEEEeECCCCcEEEEeCCCCceE--EEEEccCCceEEeccceeEEEEEeccC
Confidence 45678889999999974 444452 56789999999999888876555544 455543322233334777888888888
Q ss_pred cEEEEEecC-CC---CeeEEeeCCCEEEEE--CCCc--eEEEEcCCCCcEE--EEEEeeeCCEeeeeeeeeEEE-CCEEE
Q 023864 181 NKLEEFTHQ-MK---DGWGLATDGKVLFGS--DGSS--MLYQIDPQTLKVI--RKDIVRYKGREVRNLNELEFI-KGEVW 249 (276)
Q Consensus 181 k~i~~~~~~-~~---EGWGLT~Dg~~L~vS--DGS~--~L~viDp~t~~vi--~~I~V~~~g~pv~~lNELE~i-dG~ly 249 (276)
+.+.+.... .. ....+.+||+.|+.. |+.. .+..+|..+.+.. ..........+ ++-|.+. ||++.
T Consensus 208 ~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---V~~~~~Spdg~~l 284 (365)
T 4h5i_A 208 SCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKG---ITSMDVDMKGELA 284 (365)
T ss_dssp CEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSC---EEEEEECTTSCEE
T ss_pred cceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCC---eEeEEECCCCCce
Confidence 776654332 11 123467899988773 3433 5667776655432 22222222222 3344454 67777
Q ss_pred EEeCCCCCeEEEEeCCCCcEE
Q 023864 250 ANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 250 ANvw~s~d~I~vIDp~T~~v~ 270 (276)
|.--.+ ..|.+.|.++++.+
T Consensus 285 asgs~D-~~V~iwd~~~~~~~ 304 (365)
T 4h5i_A 285 VLASND-NSIALVKLKDLSMS 304 (365)
T ss_dssp EEEETT-SCEEEEETTTTEEE
T ss_pred EEEcCC-CEEEEEECCCCcEE
Confidence 766566 89999999997654
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00011 Score=67.24 Aligned_cols=149 Identities=13% Similarity=0.099 Sum_probs=105.1
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEE
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGF 173 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~ 173 (276)
+.+.++.. .......+.|++++.++.+++ .+..|+.||+++++.+....-.... -..+.+.++.| +..-.++.+.
T Consensus 301 ~~~~~~~~-~~~~v~~~~~~~~~~~l~sg~--~dg~i~vwd~~~~~~~~~~~~h~~~-v~~~~~~~~~l-~s~s~dg~v~ 375 (464)
T 3v7d_B 301 KCLYILSG-HTDRIYSTIYDHERKRCISAS--MDTTIRIWDLENGELMYTLQGHTAL-VGLLRLSDKFL-VSAAADGSIR 375 (464)
T ss_dssp EEEEEECC-CSSCEEEEEEETTTTEEEEEE--TTSCEEEEETTTTEEEEEECCCSSC-EEEEEECSSEE-EEEETTSEEE
T ss_pred cEEEEecC-CCCCEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCcEEEEEeCCCCc-EEEEEEcCCEE-EEEeCCCcEE
Confidence 45666652 345567999999987666666 6778999999999988776543332 34566665544 4445688999
Q ss_pred EEeCCCCcEEEEEecC-CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEe
Q 023864 174 IYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANV 252 (276)
Q Consensus 174 V~D~~tlk~i~~~~~~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANv 252 (276)
+||..+.+....+... ......+.+||+.|..+. .+.|.++|.++++.+++..... . ..++.+.+.++.+.+..
T Consensus 376 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~-~---~~v~~v~~~~~~l~~~~ 450 (464)
T 3v7d_B 376 GWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKD-A---DQIWSVNFKGKTLVAAV 450 (464)
T ss_dssp EEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTT-C---SEEEEEEEETTEEEEEE
T ss_pred EEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccC-C---CcEEEEEecCCEEEEEE
Confidence 9999999888777654 223446788999888755 6799999999999876543332 2 24556668777777666
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.27 E-value=7.9e-05 Score=66.67 Aligned_cols=172 Identities=11% Similarity=0.083 Sum_probs=109.2
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeec--CCCceEEEEEEeC-CEEEEEEee
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM--EGSYFGEGLTLLG-EKLFQVTWL 168 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l--~~~~FgEGit~~g-~~LyqlTwk 168 (276)
+++++++++..+......|.|+|||+++.++| .+..|+.||+++++......+ +..---..+++.. +++....-.
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~--~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~ 81 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCG--GDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEE--TTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEET
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEc--CCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEEC
Confidence 56788888743443557999999999888777 788999999999876544332 2222334566653 445555567
Q ss_pred CCEEEEEeCCCC--cEEEEEecCCC--CeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE
Q 023864 169 QKTGFIYDQNNL--NKLEEFTHQMK--DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI 244 (276)
Q Consensus 169 ~~~v~V~D~~tl--k~i~~~~~~~~--EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i 244 (276)
++.+.++|.++. +.+.++.-... ....+++||+.|+....+..|.++|..+.+....+.+-. ++. ..++.+.+.
T Consensus 82 D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~h~-~~v~~~~~~ 159 (345)
T 3fm0_A 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLN-SHT-QDVKHVVWH 159 (345)
T ss_dssp TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEEC-CCC-SCEEEEEEC
T ss_pred CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEec-CcC-CCeEEEEEC
Confidence 889999997765 44555542111 233466899998887777889999987765444333321 111 124445554
Q ss_pred -CCEEEEEeCCCCCeEEEEeCCCCc
Q 023864 245 -KGEVWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 245 -dG~lyANvw~s~d~I~vIDp~T~~ 268 (276)
+|.+.|..-.+ ..|.+.|.++++
T Consensus 160 p~~~~l~s~s~d-~~i~~w~~~~~~ 183 (345)
T 3fm0_A 160 PSQELLASASYD-DTVKLYREEEDD 183 (345)
T ss_dssp SSSSCEEEEETT-SCEEEEEEETTE
T ss_pred CCCCEEEEEeCC-CcEEEEEecCCC
Confidence 45555544445 677777777654
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00018 Score=61.08 Aligned_cols=153 Identities=7% Similarity=-0.038 Sum_probs=106.1
Q ss_pred CCCceEEEEec-CCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEEEEEeeCCEEEEEeCCCCc
Q 023864 104 RAFTQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLN 181 (276)
Q Consensus 104 ~aFTQGL~~~~-dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~LyqlTwk~~~v~V~D~~tlk 181 (276)
......+.+.+ ++.++.+++ .+..|+.|| .++............-..+++.. ++ +...-.++.+.+||..+.+
T Consensus 142 ~~~v~~~~~~~~~~~~l~~~~--~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~ 216 (313)
T 3odt_A 142 NASVWDAKVVSFSENKFLTAS--ADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGD 216 (313)
T ss_dssp SSCEEEEEEEETTTTEEEEEE--TTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCC
T ss_pred CCceeEEEEccCCCCEEEEEE--CCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchh
Confidence 34446788876 666655555 677899999 55555555543333445666654 45 6777789999999999999
Q ss_pred EEEEEecCCCC--eeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCCCCCe
Q 023864 182 KLEEFTHQMKD--GWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQVWPC 258 (276)
Q Consensus 182 ~i~~~~~~~~E--GWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~s~d~ 258 (276)
.+.++...... ...+++|| .|+.......|.++|.++.+.+..+.... . .++.+.+. +|++.+ ...+ +.
T Consensus 217 ~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~--~---~i~~~~~~~~~~~~~-~~~d-g~ 288 (313)
T 3odt_A 217 VLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPA--I---SIWSVDCMSNGDIIV-GSSD-NL 288 (313)
T ss_dssp EEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSS--S---CEEEEEECTTSCEEE-EETT-SC
T ss_pred hhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccC--c---eEEEEEEccCCCEEE-EeCC-Cc
Confidence 99998743122 23356788 46666678899999999999888876543 1 34455665 566554 4456 89
Q ss_pred EEEEeCCCCcE
Q 023864 259 IPYAYLQAFGS 269 (276)
Q Consensus 259 I~vIDp~T~~v 269 (276)
|.+.|.++++.
T Consensus 289 i~iw~~~~~~~ 299 (313)
T 3odt_A 289 VRIFSQEKSRW 299 (313)
T ss_dssp EEEEESCGGGC
T ss_pred EEEEeCCCCce
Confidence 99999998653
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00011 Score=68.82 Aligned_cols=162 Identities=9% Similarity=-0.046 Sum_probs=110.1
Q ss_pred CCCceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCC--ceEEEEEEeC--CEEEEEEeeCCEEEEEeCC
Q 023864 104 RAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGS--YFGEGLTLLG--EKLFQVTWLQKTGFIYDQN 178 (276)
Q Consensus 104 ~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~--~FgEGit~~g--~~LyqlTwk~~~v~V~D~~ 178 (276)
......+.|++++. ++.+++ .+..|+.||+++++.+....-... ..-..+++.. ++++...-.++.+.+||..
T Consensus 160 ~~~v~~~~~~~~~~~~l~~~~--~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 237 (615)
T 1pgu_A 160 SQRINACHLKQSRPMRSMTVG--DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK 237 (615)
T ss_dssp SSCEEEEEECSSSSCEEEEEE--TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT
T ss_pred CccEEEEEECCCCCcEEEEEe--CCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECC
Confidence 45567999999985 666666 678999999999998877653322 0234566653 3555555568999999999
Q ss_pred CCcEEEEEec---C-CCCeeEEee-CCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeC
Q 023864 179 NLNKLEEFTH---Q-MKDGWGLAT-DGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVW 253 (276)
Q Consensus 179 tlk~i~~~~~---~-~~EGWGLT~-Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw 253 (276)
+.+.+.++.. . ...=..++. |++.|+.......|.++|..+.+.+.++........ ..+.-+.+.++...+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~ 316 (615)
T 1pgu_A 238 SGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLG-NQQVGVVATGNGRIISLS 316 (615)
T ss_dssp TCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGG-GCEEEEEEEETTEEEEEE
T ss_pred CCCEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCccc-CceeEEEeCCCCeEEEEE
Confidence 9999999821 2 123334433 888888877788999999999999888776521111 122233444554444444
Q ss_pred CCCCeEEEEeCCCCcE
Q 023864 254 QVWPCIPYAYLQAFGS 269 (276)
Q Consensus 254 ~s~d~I~vIDp~T~~v 269 (276)
.. ..|.+.|..+++.
T Consensus 317 ~~-g~i~~~d~~~~~~ 331 (615)
T 1pgu_A 317 LD-GTLNFYELGHDEV 331 (615)
T ss_dssp TT-SCEEEEETTEEEE
T ss_pred CC-CCEEEEECCCCcE
Confidence 56 8899999988443
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00018 Score=62.11 Aligned_cols=154 Identities=9% Similarity=-0.055 Sum_probs=103.0
Q ss_pred CCCceEEEEecC---CEEEEEcCCCCCCeEEEEeCCC-CcEEEEeecCCCceEEEEEEeC-CEEEEEEeeCCEEEEEeCC
Q 023864 104 RAFTQGLLYAEN---DTLFESTGLYGRSSVRRVALET-GKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQN 178 (276)
Q Consensus 104 ~aFTQGL~~~~d---g~LyeStG~yg~S~I~~iDl~t-gkv~~~~~l~~~~FgEGit~~g-~~LyqlTwk~~~v~V~D~~ 178 (276)
..-+..+.|+++ |.++.+++ .+..|+.||+++ ++......-+..---..+++.. ++.....-.++.+.+||..
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~ 116 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGS--WANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLS 116 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEE--TTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCceEEEEEcCCCCCceEEEEEC--CCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcC
Confidence 555689999998 57777666 677899999998 6554232222121234556653 4444455678999999999
Q ss_pred CCcEEEEEecCCCCeeEE----eeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCC
Q 023864 179 NLNKLEEFTHQMKDGWGL----ATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQ 254 (276)
Q Consensus 179 tlk~i~~~~~~~~EGWGL----T~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~ 254 (276)
+.+.+...... ..-+.+ .+|++.|+.+..+..|.++|..+.+.+..+.... ...-+.+....+++.. .
T Consensus 117 ~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~ 188 (368)
T 3mmy_A 117 SNQAIQIAQHD-APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE------RCYCADVIYPMAVVAT-A 188 (368)
T ss_dssp TTEEEEEEECS-SCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS------CEEEEEEETTEEEEEE-G
T ss_pred CCCceeecccc-CceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC------CceEEEecCCeeEEEe-C
Confidence 99988877654 333444 5677778887778899999999998887777653 2223345555555444 3
Q ss_pred CCCeEEEEeCCCCc
Q 023864 255 VWPCIPYAYLQAFG 268 (276)
Q Consensus 255 s~d~I~vIDp~T~~ 268 (276)
. +.|.+.|..+..
T Consensus 189 ~-~~i~~~~~~~~~ 201 (368)
T 3mmy_A 189 E-RGLIVYQLENQP 201 (368)
T ss_dssp G-GCEEEEECSSSC
T ss_pred C-CcEEEEEecccc
Confidence 4 667777776644
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00013 Score=63.60 Aligned_cols=168 Identities=11% Similarity=-0.025 Sum_probs=108.6
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC-CceEEEEEEeC-CEEEEEEeeCCE
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG-SYFGEGLTLLG-EKLFQVTWLQKT 171 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~-~~FgEGit~~g-~~LyqlTwk~~~ 171 (276)
+.+.+++. ...-...+.|++++.++.+++ .+..|+.||+++++......+.. .--...+++.. ++.+...-.++.
T Consensus 43 ~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 119 (372)
T 1k8k_C 43 VQVHELKE-HNGQVTGVDWAPDSNRIVTCG--TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRV 119 (372)
T ss_dssp EEEEEEEC-CSSCEEEEEEETTTTEEEEEE--TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSS
T ss_pred EeeeeecC-CCCcccEEEEeCCCCEEEEEc--CCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCE
Confidence 36677753 244567999999988776666 66789999999998766654332 22234556642 444455557889
Q ss_pred EEEEeCCCCcE---EEEEecCC---CCeeEEeeCCCEEEEECCCceEEEEcCC------------------CCcEEEEEE
Q 023864 172 GFIYDQNNLNK---LEEFTHQM---KDGWGLATDGKVLFGSDGSSMLYQIDPQ------------------TLKVIRKDI 227 (276)
Q Consensus 172 v~V~D~~tlk~---i~~~~~~~---~EGWGLT~Dg~~L~vSDGS~~L~viDp~------------------t~~vi~~I~ 227 (276)
+.+||.++.+. ...+..+. -....+++|++.|+....+..|.++|.. +.+.+..+.
T Consensus 120 v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (372)
T 1k8k_C 120 ISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS 199 (372)
T ss_dssp EEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC
T ss_pred EEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC
Confidence 99999887763 44443221 1233466789999887778899999953 556655544
Q ss_pred eeeCCEeeeeeeeeEEE-CCEEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 228 VRYKGREVRNLNELEFI-KGEVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 228 V~~~g~pv~~lNELE~i-dG~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
.. . ..++.+.+. +|..++..-.+ ..|.+.|.++++.+
T Consensus 200 ~~--~---~~v~~~~~~~~~~~l~~~~~d-~~i~i~d~~~~~~~ 237 (372)
T 1k8k_C 200 SS--C---GWVHGVCFSANGSRVAWVSHD-STVCLADADKKMAV 237 (372)
T ss_dssp CC--S---SCEEEEEECSSSSEEEEEETT-TEEEEEEGGGTTEE
T ss_pred CC--C---CeEEEEEECCCCCEEEEEeCC-CEEEEEECCCCcee
Confidence 21 1 134455564 55444444466 88999999987654
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=7.6e-05 Score=68.68 Aligned_cols=166 Identities=7% Similarity=-0.031 Sum_probs=111.3
Q ss_pred EEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEEEEEeeCCEEE
Q 023864 95 VVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGF 173 (276)
Q Consensus 95 Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~LyqlTwk~~~v~ 173 (276)
.+.++.. .......+.|+++|.++.+++ .+..|+.||+.+++.+....-... .-..+++.. +...+..-.++++.
T Consensus 142 ~~~~l~~-h~~~V~~v~~~~~~~~l~sgs--~D~~i~iwd~~~~~~~~~~~~h~~-~V~~v~~~p~~~~l~s~s~D~~i~ 217 (410)
T 1vyh_C 142 FERTLKG-HTDSVQDISFDHSGKLLASCS--ADMTIKLWDFQGFECIRTMHGHDH-NVSSVSIMPNGDHIVSASRDKTIK 217 (410)
T ss_dssp CCEEECC-CSSCEEEEEECTTSSEEEEEE--TTSCCCEEETTSSCEEECCCCCSS-CEEEEEECSSSSEEEEEETTSEEE
T ss_pred EEEEEec-cCCcEEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCceeEEEcCCCC-CEEEEEEeCCCCEEEEEeCCCeEE
Confidence 3455542 355678999999998888777 778999999999988766532222 234566643 34445555789999
Q ss_pred EEeCCCCcEEEEEecCCC--CeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-------
Q 023864 174 IYDQNNLNKLEEFTHQMK--DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI------- 244 (276)
Q Consensus 174 V~D~~tlk~i~~~~~~~~--EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i------- 244 (276)
+||..+.+.+.++.-... ....+.+||+.|+....+..|.++|..+.+.+..+.-.. .+ ++-+.+.
T Consensus 218 ~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~--~~---v~~~~~~~~~~~~~ 292 (410)
T 1vyh_C 218 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR--HV---VECISWAPESSYSS 292 (410)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS--SC---EEEEEECCSCGGGG
T ss_pred EEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCC--ce---EEEEEEcCcccccc
Confidence 999999999998863311 122356788888887778899999999988776553221 11 2222232
Q ss_pred --------------CCEEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 245 --------------KGEVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 245 --------------dG~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
+|.+.+..-.+ ..|.+.|..+++.+
T Consensus 293 ~~~~~~~~~~~~~~~g~~l~sgs~D-~~i~iwd~~~~~~~ 331 (410)
T 1vyh_C 293 ISEATGSETKKSGKPGPFLLSGSRD-KTIKMWDVSTGMCL 331 (410)
T ss_dssp GGGCCSCC-------CCEEEEEETT-SEEEEEETTTTEEE
T ss_pred hhhhccccccccCCCCCEEEEEeCC-CeEEEEECCCCceE
Confidence 14455555456 78999999986544
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.26 E-value=3.1e-05 Score=68.91 Aligned_cols=156 Identities=13% Similarity=0.077 Sum_probs=111.1
Q ss_pred CCceEEEEecC-CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC-----CceEEEEEEeC--CEEEEEEeeCC---EEE
Q 023864 105 AFTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQMEG-----SYFGEGLTLLG--EKLFQVTWLQK---TGF 173 (276)
Q Consensus 105 aFTQGL~~~~d-g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~-----~~FgEGit~~g--~~LyqlTwk~~---~v~ 173 (276)
.....+.|+++ +.++.+++ .+..|+.||+++++.+....... ...-..+++.. ..++...-.++ .+.
T Consensus 166 ~~v~~~~~~~~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~ 243 (416)
T 2pm9_A 166 DEVISLAWNQSLAHVFASAG--SSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSIL 243 (416)
T ss_dssp CCCCEEEECSSCTTEEEEES--SSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCC
T ss_pred CCeeEEEeCCCCCcEEEEEc--CCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEE
Confidence 34569999998 56777666 67789999999999888877652 23345666664 35666666666 999
Q ss_pred EEeCCCC-cEEEEEe-cCCCCeeE--Eee-CCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CC-
Q 023864 174 IYDQNNL-NKLEEFT-HQMKDGWG--LAT-DGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG- 246 (276)
Q Consensus 174 V~D~~tl-k~i~~~~-~~~~EGWG--LT~-Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG- 246 (276)
+||..+. +.+..+. -....-.. +++ |++.|+....+..|.++|.++.+.+.++.... ..++.+.+. +|
T Consensus 244 ~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~-----~~v~~~~~s~~~~ 318 (416)
T 2pm9_A 244 IWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARG-----NWCFKTKFAPEAP 318 (416)
T ss_dssp EEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSS-----SCCCCEEECTTCT
T ss_pred EEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCC-----CceEEEEECCCCC
Confidence 9999986 5556665 11122233 456 78888887778899999999999888776432 234556676 45
Q ss_pred EEEEEeCCCCCeEEEEeCCCCc
Q 023864 247 EVWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 247 ~lyANvw~s~d~I~vIDp~T~~ 268 (276)
.++|..-.+ ..|.+.|.++++
T Consensus 319 ~~l~s~~~d-~~i~iw~~~~~~ 339 (416)
T 2pm9_A 319 DLFACASFD-NKIEVQTLQNLT 339 (416)
T ss_dssp TEEEECCSS-SEEEEEESCCCC
T ss_pred CEEEEEecC-CcEEEEEccCCC
Confidence 577777667 899999988765
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.26 E-value=1e-05 Score=71.99 Aligned_cols=170 Identities=9% Similarity=-0.034 Sum_probs=107.2
Q ss_pred eEEEEEEecCCCCCceEEEEec--CCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEEEEEeeC
Q 023864 93 IQVVNEFPHDPRAFTQGLLYAE--NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQ 169 (276)
Q Consensus 93 ~~Vv~~~Phd~~aFTQGL~~~~--dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~LyqlTwk~ 169 (276)
.+++..+.+....-...+.+++ ++.++.+++ .+..|+.||+++++............-..+++.. +.++..--.+
T Consensus 114 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s--~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~d 191 (343)
T 3lrv_A 114 NKVLREIEVDSANEIIYMYGHNEVNTEYFIWAD--NRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPD 191 (343)
T ss_dssp CCEEEEEECCCSSCEEEEECCC---CCEEEEEE--TTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTT
T ss_pred cceeEEeecCCCCCEEEEEcCCCCCCCEEEEEe--CCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCC
Confidence 3456666554455678999999 888888777 7789999999999986554333221223566654 4555555789
Q ss_pred CEEEEEeCCCCcEE-EEEecC-CC--CeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeee-CCEeeeeeeeeEEE
Q 023864 170 KTGFIYDQNNLNKL-EEFTHQ-MK--DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY-KGREVRNLNELEFI 244 (276)
Q Consensus 170 ~~v~V~D~~tlk~i-~~~~~~-~~--EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~-~g~pv~~lNELE~i 244 (276)
+.+.+||..+.+.+ .++... .. ....+++||+.|..+. ++.|.++|..+.+.+.++..-. ...++.. .-+.+.
T Consensus 192 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 269 (343)
T 3lrv_A 192 GILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGT-VTYDID 269 (343)
T ss_dssp SCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CC-EEEEEC
T ss_pred CEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccc-eEEEEC
Confidence 99999999999987 777651 11 2334678999988855 3499999999987665443311 1111111 124454
Q ss_pred -CCEEEEEeCC-CCCeEEEEeCCCC
Q 023864 245 -KGEVWANVWQ-VWPCIPYAYLQAF 267 (276)
Q Consensus 245 -dG~lyANvw~-s~d~I~vIDp~T~ 267 (276)
+|...|..-. + +.|.+.|.+++
T Consensus 270 ~~g~~l~~~s~~d-~~i~v~~~~~~ 293 (343)
T 3lrv_A 270 DSGKNMIAYSNES-NSLTIYKFDKK 293 (343)
T ss_dssp TTSSEEEEEETTT-TEEEEEEECTT
T ss_pred CCCCEEEEecCCC-CcEEEEEEccc
Confidence 4544444333 5 77777776543
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.1e-05 Score=72.65 Aligned_cols=156 Identities=8% Similarity=0.011 Sum_probs=106.2
Q ss_pred CCceEEEEecCCEE-EEEcCCCCCCeEEEEeCC--CCcEEEEe---ecCCCceEEEEEEe--CCEEEEEEeeCCEEEEEe
Q 023864 105 AFTQGLLYAENDTL-FESTGLYGRSSVRRVALE--TGKVEAIN---QMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYD 176 (276)
Q Consensus 105 aFTQGL~~~~dg~L-yeStG~yg~S~I~~iDl~--tgkv~~~~---~l~~~~FgEGit~~--g~~LyqlTwk~~~v~V~D 176 (276)
.....+.|++||++ +.+++ .+..|+.||+. +++.+... ..+..+ ..+++. +..|+... .++.++++|
T Consensus 103 ~~v~~~~~s~d~~~l~~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v--~~~~~sp~~~~l~~~~-~~g~v~~~~ 177 (450)
T 2vdu_B 103 SYIRNLRLTSDESRLIACAD--SDKSLLVFDVDKTSKNVLKLRKRFCFSKRP--NAISIAEDDTTVIIAD-KFGDVYSID 177 (450)
T ss_dssp CCEEEEEECTTSSEEEEEEG--GGTEEEEEEECSSSSSCEEEEEEEECSSCE--EEEEECTTSSEEEEEE-TTSEEEEEE
T ss_pred CceEEEEEcCCCCEEEEEEC--CCCeEEEEECcCCCCceeeeeecccCCCCc--eEEEEcCCCCEEEEEe-CCCcEEEEe
Confidence 35689999999875 56665 57889999999 88766654 334443 356664 44555554 589999999
Q ss_pred CCCCcEEE----EEec-C-CCCeeEEeeC---CCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCE
Q 023864 177 QNNLNKLE----EFTH-Q-MKDGWGLATD---GKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGE 247 (276)
Q Consensus 177 ~~tlk~i~----~~~~-~-~~EGWGLT~D---g~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~ 247 (276)
..+.+... .+.- . .-....+++| ++.|+.++....|.++|..+.+.+..+..+- . ..++-+.+.||.
T Consensus 178 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h-~---~~v~~~~~sd~~ 253 (450)
T 2vdu_B 178 INSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGH-K---HFVSSICCGKDY 253 (450)
T ss_dssp TTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCC-S---SCEEEEEECSTT
T ss_pred cCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCC-C---CceEEEEECCCC
Confidence 88777543 3321 1 1133457788 8888887778899999999988776543221 1 234455666666
Q ss_pred EEEEeCCCCCeEEEEeCCCCcEE
Q 023864 248 VWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 248 lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
.++..-.+ ..|.+.|.++++.+
T Consensus 254 ~l~s~~~d-~~v~vwd~~~~~~~ 275 (450)
T 2vdu_B 254 LLLSAGGD-DKIFAWDWKTGKNL 275 (450)
T ss_dssp EEEEEESS-SEEEEEETTTCCEE
T ss_pred EEEEEeCC-CeEEEEECCCCcEe
Confidence 55555566 89999999997753
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00053 Score=62.60 Aligned_cols=166 Identities=11% Similarity=0.030 Sum_probs=112.4
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe---CCEEEEEEeeCC
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL---GEKLFQVTWLQK 170 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~---g~~LyqlTwk~~ 170 (276)
+.+.++.. ...-+..+.|++++ ++.+++ .+..|+.||+++++.+....-... --..+++. ++.+.+..-.++
T Consensus 153 ~~~~~~~~-h~~~V~~l~~~~~~-~l~s~s--~dg~i~vwd~~~~~~~~~~~~h~~-~v~~l~~~~~~~~~~l~s~s~d~ 227 (464)
T 3v7d_B 153 KFLLQLSG-HDGGVWALKYAHGG-ILVSGS--TDRTVRVWDIKKGCCTHVFEGHNS-TVRCLDIVEYKNIKYIVTGSRDN 227 (464)
T ss_dssp EEEEEECC-CSSCEEEEEECSTT-EEEEEE--TTSCEEEEETTTTEEEEEECCCSS-CEEEEEEEESSSCEEEEEEETTS
T ss_pred cEEEEEeC-CCcCEEEEEEcCCC-EEEEEe--CCCCEEEEECCCCcEEEEECCCCC-ccEEEEEecCCCCCEEEEEcCCC
Confidence 46666662 34555799999878 444555 678899999999998776652222 12344444 457777777899
Q ss_pred EEEEEeCCCCcEEE-----------------------EEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEE
Q 023864 171 TGFIYDQNNLNKLE-----------------------EFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDI 227 (276)
Q Consensus 171 ~v~V~D~~tlk~i~-----------------------~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~ 227 (276)
.+.++|..+.+.+. .+.-....-..+.++++.|+....+..|.++|..+++.+..+.
T Consensus 228 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 307 (464)
T 3v7d_B 228 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS 307 (464)
T ss_dssp CEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred cEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Confidence 99999998876432 2221112334578899999998888899999999998877664
Q ss_pred eeeCCEeeeeeeeeEEE-CCEEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 228 VRYKGREVRNLNELEFI-KGEVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 228 V~~~g~pv~~lNELE~i-dG~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
-.. ..+..+.+. +|...+..-.+ ..|.+.|.++++.+
T Consensus 308 ~~~-----~~v~~~~~~~~~~~l~sg~~d-g~i~vwd~~~~~~~ 345 (464)
T 3v7d_B 308 GHT-----DRIYSTIYDHERKRCISASMD-TTIRIWDLENGELM 345 (464)
T ss_dssp CCS-----SCEEEEEEETTTTEEEEEETT-SCEEEEETTTTEEE
T ss_pred CCC-----CCEEEEEEcCCCCEEEEEeCC-CcEEEEECCCCcEE
Confidence 322 234455666 45444445456 88999999996543
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00011 Score=66.67 Aligned_cols=167 Identities=8% Similarity=0.014 Sum_probs=113.0
Q ss_pred EEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCC---CCcEEEEe--------ecC---CCceEEEEEEe---
Q 023864 96 VNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALE---TGKVEAIN--------QME---GSYFGEGLTLL--- 158 (276)
Q Consensus 96 v~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~---tgkv~~~~--------~l~---~~~FgEGit~~--- 158 (276)
..++.| ......+.|++++.++.+++ .+..|+.||++ +++..... .+. ...+...+...
T Consensus 105 ~~~~~h--~~~v~~~~~~~~~~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 180 (437)
T 3gre_A 105 SLTYDC--SSTVTQITMIPNFDAFAVSS--KDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE 180 (437)
T ss_dssp SEEEEC--SSCEEEEEECTTSSEEEEEE--TTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS
T ss_pred eeeccC--CCCEEEEEEeCCCCEEEEEe--CCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC
Confidence 344556 34457999999888777766 67899999995 66554432 211 22233333322
Q ss_pred CCEEEEEEeeCCEEEEEeCCCCcEEEEEecC--CCC--eeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEe
Q 023864 159 GEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ--MKD--GWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGRE 234 (276)
Q Consensus 159 g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~--~~E--GWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~p 234 (276)
++.+....-.++.+.+||..+.+.+.++..+ ... ...+.+||+.|+.......|.++|..+.+.++++.... ..+
T Consensus 181 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~ 259 (437)
T 3gre_A 181 EKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGD-HAP 259 (437)
T ss_dssp SCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTT-CEE
T ss_pred CCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCC-CCc
Confidence 3566666667899999999999999998742 122 23356799999988888899999999998888776532 223
Q ss_pred eeeeeeeEEE-----CCEEEEEeCCCCCeEEEEeCCCCcEEE
Q 023864 235 VRNLNELEFI-----KGEVWANVWQVWPCIPYAYLQAFGSSL 271 (276)
Q Consensus 235 v~~lNELE~i-----dG~lyANvw~s~d~I~vIDp~T~~v~l 271 (276)
++.+.+. +|.+.|..-.+ ..|.+.|.++++..-
T Consensus 260 ---v~~~~~~~~~s~~~~~l~s~~~d-g~i~iwd~~~~~~~~ 297 (437)
T 3gre_A 260 ---ITHVEVCQFYGKNSVIVVGGSSK-TFLTIWNFVKGHCQY 297 (437)
T ss_dssp ---EEEEEECTTTCTTEEEEEEESTT-EEEEEEETTTTEEEE
T ss_pred ---eEEEEeccccCCCccEEEEEcCC-CcEEEEEcCCCcEEE
Confidence 3344333 45566666555 789999999976543
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00014 Score=63.43 Aligned_cols=154 Identities=12% Similarity=-0.007 Sum_probs=107.2
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCc---EEEEeecCCCceEEEEEEeC-CEEEEEEeeCCEEEEEeC--
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGK---VEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQ-- 177 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgk---v~~~~~l~~~~FgEGit~~g-~~LyqlTwk~~~v~V~D~-- 177 (276)
......+.|++++.++.+++ .+..|+.||+++++ +......+....-..+++.. ++++...-.++.+.+||.
T Consensus 96 ~~~v~~~~~~~~~~~l~~~~--~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 173 (372)
T 1k8k_C 96 NRAARCVRWAPNEKKFAVGS--GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYI 173 (372)
T ss_dssp SSCEEEEEECTTSSEEEEEE--TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCC
T ss_pred CCceeEEEECCCCCEEEEEe--CCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccc
Confidence 44567999999987666665 67889999999876 23333333233345667653 455566667899999994
Q ss_pred ----------------CCCcEEEEEecCCC--CeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeee
Q 023864 178 ----------------NNLNKLEEFTHQMK--DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLN 239 (276)
Q Consensus 178 ----------------~tlk~i~~~~~~~~--EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lN 239 (276)
.+.+.+.++.-... ....+.+||+.|+....+..|.++|..+.+.+.++.... . .++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~---~v~ 248 (372)
T 1k8k_C 174 KEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET--L---PLL 248 (372)
T ss_dssp TTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS--C---CEE
T ss_pred ccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCC--C---CeE
Confidence 46677777752211 233466799999988888899999999999888876542 2 345
Q ss_pred eeEEE-CCEEEEEeCCCCCeEEEEeCCC
Q 023864 240 ELEFI-KGEVWANVWQVWPCIPYAYLQA 266 (276)
Q Consensus 240 ELE~i-dG~lyANvw~s~d~I~vIDp~T 266 (276)
.+.+. +|.+.+.- .. +.|.+.|..+
T Consensus 249 ~~~~~~~~~~l~~~-~d-~~i~i~~~~~ 274 (372)
T 1k8k_C 249 AVTFITESSLVAAG-HD-CFPVLFTYDS 274 (372)
T ss_dssp EEEEEETTEEEEEE-TT-SSCEEEEEET
T ss_pred EEEEecCCCEEEEE-eC-CeEEEEEccC
Confidence 56676 67766655 56 8888888877
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00012 Score=65.88 Aligned_cols=161 Identities=9% Similarity=0.074 Sum_probs=108.9
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC-CceEEEEEEe-CCEEEEEEeeCCEEEEEeCCCCc
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG-SYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNLN 181 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~-~~FgEGit~~-g~~LyqlTwk~~~v~V~D~~tlk 181 (276)
......+.|++++..+.+++ ++..|+.||+++++.+....-.. ......+... ++.+++..-.++++.+||..+.+
T Consensus 154 ~~~v~~~~~~~~~~~l~t~s--~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~ 231 (354)
T 2pbi_B 154 TNYLSACSFTNSDMQILTAS--GDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ 231 (354)
T ss_dssp SSCEEEEEECSSSSEEEEEE--TTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC
T ss_pred CCcEEEEEEeCCCCEEEEEe--CCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc
Confidence 45567999999886555666 67899999999999877765332 2333333333 23566666678999999999999
Q ss_pred EEEEEecCCC--CeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCCCCCe
Q 023864 182 KLEEFTHQMK--DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQVWPC 258 (276)
Q Consensus 182 ~i~~~~~~~~--EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~s~d~ 258 (276)
.+.++..... ....+.+||+.|+....+..|.++|..+.+.+....-. ......+.+.+. +|.+.+.-..+ ..
T Consensus 232 ~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~---~~~~~~~~~~~s~~g~~l~~g~~d-~~ 307 (354)
T 2pbi_B 232 CVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKE---SIIFGASSVDFSLSGRLLFAGYND-YT 307 (354)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT---TCCSCEEEEEECTTSSEEEEEETT-SC
T ss_pred EEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC---CcccceeEEEEeCCCCEEEEEECC-Cc
Confidence 9988863211 23346678988888767889999999988665433211 111123444554 56665555566 88
Q ss_pred EEEEeCCCCcEE
Q 023864 259 IPYAYLQAFGSS 270 (276)
Q Consensus 259 I~vIDp~T~~v~ 270 (276)
|.+-|..+++.+
T Consensus 308 i~vwd~~~~~~~ 319 (354)
T 2pbi_B 308 INVWDVLKGSRV 319 (354)
T ss_dssp EEEEETTTCSEE
T ss_pred EEEEECCCCceE
Confidence 999999887644
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=98.22 E-value=3.1e-05 Score=67.12 Aligned_cols=158 Identities=8% Similarity=-0.009 Sum_probs=106.8
Q ss_pred CCceEEEEecC----CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeCCEEEEEeCC
Q 023864 105 AFTQGLLYAEN----DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQN 178 (276)
Q Consensus 105 aFTQGL~~~~d----g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~~~v~V~D~~ 178 (276)
.-...+.|+++ |.++.+++ .+..|+.||+++++.+....-... --..+++. ++.+++..-.++.+.+||..
T Consensus 70 ~~v~~~~~~~~~~~~~~~l~~~~--~dg~i~v~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 146 (366)
T 3k26_A 70 ENFYTCAWTYDSNTSHPLLAVAG--SRGIIRIINPITMQCIKHYVGHGN-AINELKFHPRDPNLLLSVSKDHALRLWNIQ 146 (366)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEE--TTCEEEEECTTTCCEEEEEESCCS-CEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred CcEEEEEeccCCCCCCCEEEEec--CCCEEEEEEchhceEeeeecCCCC-cEEEEEECCCCCCEEEEEeCCCeEEEEEee
Confidence 44579999998 67777666 677999999999998877653222 23456664 45666666678999999999
Q ss_pred CCcEEEEEe---cCCCCeeE--EeeCCCEEEEECCCceEEEEcCCCCcEEEEEEee------------------------
Q 023864 179 NLNKLEEFT---HQMKDGWG--LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVR------------------------ 229 (276)
Q Consensus 179 tlk~i~~~~---~~~~EGWG--LT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~------------------------ 229 (276)
+.+.+..+. .....-.. +.+||+.|+....+..|.++|..+.+.+..+.-.
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (366)
T 3k26_A 147 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFST 226 (366)
T ss_dssp TTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEE
T ss_pred cCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccc
Confidence 999998883 11123333 4578999988777889999999987654322210
Q ss_pred eCCEeeeeeeeeEEECCEEEEEeCCCCCeEEEEeCCCCc
Q 023864 230 YKGREVRNLNELEFIKGEVWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 230 ~~g~pv~~lNELE~idG~lyANvw~s~d~I~vIDp~T~~ 268 (276)
..+ .-..++-+.+. |.+.+..-.+ +.|.+.|..+++
T Consensus 227 ~~~-~~~~v~~~~~~-~~~l~~~~~d-~~i~~wd~~~~~ 262 (366)
T 3k26_A 227 RDI-HRNYVDCVRWL-GDLILSKSCE-NAIVCWKPGKME 262 (366)
T ss_dssp CSS-CSSCCCEEEEE-TTEEEEECSS-SEEEEEEESSTT
T ss_pred ccC-CcceEEEEEEc-CCEEEEEecC-CEEEEEeCCCcc
Confidence 000 11234555666 4444445456 899999988764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00022 Score=69.76 Aligned_cols=168 Identities=10% Similarity=-0.021 Sum_probs=114.9
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC--CEEEEEEeeCCE
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG--EKLFQVTWLQKT 171 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g--~~LyqlTwk~~~ 171 (276)
+.+.++.. .......+.|++++..+.+++ .+..|+.||++++........+..-.-..+++.. +.++...-.++.
T Consensus 88 ~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 164 (814)
T 3mkq_A 88 EKVVDFEA-HPDYIRSIAVHPTKPYVLSGS--DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT 164 (814)
T ss_dssp CEEEEEEC-CSSCEEEEEECSSSSEEEEEE--TTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE
T ss_pred cEEEEEec-CCCCEEEEEEeCCCCEEEEEc--CCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCe
Confidence 45556652 244567999999987665555 6779999999988433333223222345667764 567777778999
Q ss_pred EEEEeCCCCcEEEEEecCC-CC--eeEEee--CCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-C
Q 023864 172 GFIYDQNNLNKLEEFTHQM-KD--GWGLAT--DGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-K 245 (276)
Q Consensus 172 v~V~D~~tlk~i~~~~~~~-~E--GWGLT~--Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-d 245 (276)
+.+||..+.+....+.... .. ...+++ ||..|++......|.++|..+.+.+.++.... . .++-+.+. +
T Consensus 165 v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~--~---~v~~~~~~~~ 239 (814)
T 3mkq_A 165 VKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM--S---NVSFAVFHPT 239 (814)
T ss_dssp EEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCS--S---CEEEEEECSS
T ss_pred EEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCC--C---CEEEEEEcCC
Confidence 9999999888877776431 22 223455 88999998888899999999998877765432 2 33444555 5
Q ss_pred CEEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 246 GEVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 246 G~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
|.+.+....+ ..|.+.|+.+++..
T Consensus 240 ~~~l~~~~~d-g~v~vwd~~~~~~~ 263 (814)
T 3mkq_A 240 LPIIISGSED-GTLKIWNSSTYKVE 263 (814)
T ss_dssp SSEEEEEETT-SCEEEEETTTCSEE
T ss_pred CCEEEEEeCC-CeEEEEECCCCcEE
Confidence 5555555566 88999999986643
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00043 Score=61.58 Aligned_cols=163 Identities=10% Similarity=0.022 Sum_probs=110.7
Q ss_pred eEEEEEEecCCCCCceEEEEecCC-EEEEEcCCCCCCeEEEEeCCCCcEEEEeec-CCCceEEEEEEeC--CEEEEEEee
Q 023864 93 IQVVNEFPHDPRAFTQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQM-EGSYFGEGLTLLG--EKLFQVTWL 168 (276)
Q Consensus 93 ~~Vv~~~Phd~~aFTQGL~~~~dg-~LyeStG~yg~S~I~~iDl~tgkv~~~~~l-~~~~FgEGit~~g--~~LyqlTwk 168 (276)
++++.++.. ...-...+.|++++ .++.+++ .+..|+.||+.+++......+ +..---..+++.. +.++...-.
T Consensus 63 ~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 139 (383)
T 3ei3_B 63 YKLHRTASP-FDRRVTSLEWHPTHPTTVAVGS--KGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSI 139 (383)
T ss_dssp CEEEEEECC-CSSCEEEEEECSSCTTEEEEEE--BTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEET
T ss_pred cceEEeccC-CCCCEEEEEECCCCCCEEEEEc--CCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeC
Confidence 345555532 23445799999998 6776666 577899999999988777664 2222344667764 366666677
Q ss_pred CCEEEEEeCCCCcEEEEEecCC-----CCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEE
Q 023864 169 QKTGFIYDQNNLNKLEEFTHQM-----KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEF 243 (276)
Q Consensus 169 ~~~v~V~D~~tlk~i~~~~~~~-----~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~ 243 (276)
++.+.++|..+ +.+..+.... -....+.+|++.|+.......|.++|. +.+.+.++.-.. ..++.+.+
T Consensus 140 d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~-----~~v~~~~~ 212 (383)
T 3ei3_B 140 RGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHK-----AKVTHAEF 212 (383)
T ss_dssp TTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSS-----SCEEEEEE
T ss_pred CCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCC-----CcEEEEEE
Confidence 89999999987 5555654321 123446789999999888899999998 466655554322 23455666
Q ss_pred E-CCE-EEEEeCCCCCeEEEEeCCC
Q 023864 244 I-KGE-VWANVWQVWPCIPYAYLQA 266 (276)
Q Consensus 244 i-dG~-lyANvw~s~d~I~vIDp~T 266 (276)
. +|. +++..-.+ ..|.+.|..+
T Consensus 213 ~~~~~~~l~s~~~d-~~i~iwd~~~ 236 (383)
T 3ei3_B 213 NPRCDWLMATSSVD-ATVKLWDLRN 236 (383)
T ss_dssp CSSCTTEEEEEETT-SEEEEEEGGG
T ss_pred CCCCCCEEEEEeCC-CEEEEEeCCC
Confidence 6 344 66666566 7899999887
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=5.9e-05 Score=75.73 Aligned_cols=120 Identities=13% Similarity=0.118 Sum_probs=93.4
Q ss_pred CCCeEEEEeCCCCcEEEEeecCCCceEEE----------------------------------EEEe--CCEEEEEEee-
Q 023864 126 GRSSVRRVALETGKVEAINQMEGSYFGEG----------------------------------LTLL--GEKLFQVTWL- 168 (276)
Q Consensus 126 g~S~I~~iDl~tgkv~~~~~l~~~~FgEG----------------------------------it~~--g~~LyqlTwk- 168 (276)
.+..|+.+|.+||+++...++++..+..+ ++++ ++.+|+-+..
T Consensus 335 ~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~ 414 (677)
T 1kb0_A 335 KNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNV 414 (677)
T ss_dssp TTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEEC
T ss_pred CCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhc
Confidence 56789999999999998887765444333 3554 4788886542
Q ss_pred -----------------------------------------CCEEEEEeCCCCcEEEEEecCCCCeeE--EeeCCCEEEE
Q 023864 169 -----------------------------------------QKTGFIYDQNNLNKLEEFTHQMKDGWG--LATDGKVLFG 205 (276)
Q Consensus 169 -----------------------------------------~~~v~V~D~~tlk~i~~~~~~~~EGWG--LT~Dg~~L~v 205 (276)
.+.+..+|++|.|++-+++.+ ...|| ++.+|+.+|+
T Consensus 415 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~~~g~~v~~ 493 (677)
T 1kb0_A 415 PVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQ 493 (677)
T ss_dssp CCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEE
T ss_pred ceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC-CCCcCcceEeCCCEEEE
Confidence 177999999999999999876 23444 8889999999
Q ss_pred ECCCceEEEEcCCCCcEEEEEEeee--CCEeeeeeeeeEE-ECCEEEEEe
Q 023864 206 SDGSSMLYQIDPQTLKVIRKDIVRY--KGREVRNLNELEF-IKGEVWANV 252 (276)
Q Consensus 206 SDGS~~L~viDp~t~~vi~~I~V~~--~g~pv~~lNELE~-idG~lyANv 252 (276)
...+..|+++|.+|++++.++.+.. .+.|+. | .+|+.|+.+
T Consensus 494 g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~------y~~~G~~~v~~ 537 (677)
T 1kb0_A 494 GTADGRLVAYHAATGEKLWEAPTGTGVVAAPST------YMVDGRQYVSV 537 (677)
T ss_dssp ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE------EEETTEEEEEE
T ss_pred ECCCCcEEEEECCCCceeeeeeCCCCcccCCEE------EEeCCEEEEEE
Confidence 8889999999999999999999875 234443 4 689988766
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00063 Score=58.67 Aligned_cols=111 Identities=7% Similarity=0.010 Sum_probs=79.0
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEE--e-CCEEEEEEeeCCEEEEEeCCCC
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL--L-GEKLFQVTWLQKTGFIYDQNNL 180 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~--~-g~~LyqlTwk~~~v~V~D~~tl 180 (276)
..-...+.|++|+.++.+++ .+..|+.||+++++......-.... ..+++ . +++++...-.++.+.+||..+.
T Consensus 86 ~~~v~~~~~~~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 161 (368)
T 3mmy_A 86 TGPVLDVCWSDDGSKVFTAS--CDKTAKMWDLSSNQAIQIAQHDAPV--KTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS 161 (368)
T ss_dssp SSCEEEEEECTTSSEEEEEE--TTSEEEEEETTTTEEEEEEECSSCE--EEEEEEECSSCEEEEEEETTSEEEEECSSCS
T ss_pred cCCEEEEEECcCCCEEEEEc--CCCcEEEEEcCCCCceeeccccCce--EEEEEEeCCCCCEEEEccCCCcEEEEECCCC
Confidence 44557999999987666666 6779999999999987765544443 35565 4 3566677778999999999999
Q ss_pred cEEEEEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCC
Q 023864 181 NKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQT 219 (276)
Q Consensus 181 k~i~~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t 219 (276)
+.+.++..+ .....+...+..+++..+...+.++|..+
T Consensus 162 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 199 (368)
T 3mmy_A 162 NPMMVLQLP-ERCYCADVIYPMAVVATAERGLIVYQLEN 199 (368)
T ss_dssp SCSEEEECS-SCEEEEEEETTEEEEEEGGGCEEEEECSS
T ss_pred cEEEEEecC-CCceEEEecCCeeEEEeCCCcEEEEEecc
Confidence 999888765 34455555555666655555666666544
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.19 E-value=5.5e-05 Score=65.63 Aligned_cols=148 Identities=7% Similarity=-0.002 Sum_probs=98.7
Q ss_pred CCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe-CCEEEEEEeeCCEEEEEeCCCCcEE
Q 023864 105 AFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNLNKL 183 (276)
Q Consensus 105 aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~-g~~LyqlTwk~~~v~V~D~~tlk~i 183 (276)
.....+.++++|.||.++. ...|..+|.+ |+......++...+ ..+..+ ++.||+.+ +.++.+| .+.+.+
T Consensus 137 ~~~~~~~~~~~g~l~vgt~---~~~l~~~d~~-g~~~~~~~~~~~~~-~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~ 207 (330)
T 3hxj_A 137 AIYATPIVSEDGTIYVGSN---DNYLYAINPD-GTEKWRFKTNDAIT-SAASIGKDGTIYFGS---DKVYAIN-PDGTEK 207 (330)
T ss_dssp CCCSCCEECTTSCEEEECT---TSEEEEECTT-SCEEEEEECSSCCC-SCCEECTTCCEEEES---SSEEEEC-TTSCEE
T ss_pred ceeeeeEEcCCCEEEEEcC---CCEEEEECCC-CCEeEEEecCCCce-eeeEEcCCCEEEEEe---CEEEEEC-CCCcEE
Confidence 3445677777889998653 3689999999 98877777664332 234553 68999999 8899999 677777
Q ss_pred EEEecCCCCeeEEeeCCC-EEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCCCCCeEEE
Q 023864 184 EEFTHQMKDGWGLATDGK-VLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQVWPCIPY 261 (276)
Q Consensus 184 ~~~~~~~~EGWGLT~Dg~-~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~s~d~I~v 261 (276)
.++..+...-.++..|.+ .||++.....|+.+|+ +.+.+.+..... .. .+.+... +|.||+... . +.|.+
T Consensus 208 ~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~--~~---~~~~~~~~~g~l~v~t~-~-ggl~~ 279 (330)
T 3hxj_A 208 WNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGK--RI---ESSPVIGNTDTIYFGSY-D-GHLYA 279 (330)
T ss_dssp EEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSS--CC---CSCCEECTTSCEEEECT-T-CEEEE
T ss_pred EEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCC--Cc---cccceEcCCCeEEEecC-C-CCEEE
Confidence 776644223334554543 7888765678999996 455555544332 11 1223344 789998763 3 58999
Q ss_pred EeCCCCcEE
Q 023864 262 AYLQAFGSS 270 (276)
Q Consensus 262 IDp~T~~v~ 270 (276)
+|+ +++..
T Consensus 280 ~d~-~g~~~ 287 (330)
T 3hxj_A 280 INP-DGTEK 287 (330)
T ss_dssp ECT-TSCEE
T ss_pred ECC-CCcEE
Confidence 998 65654
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00017 Score=66.20 Aligned_cols=152 Identities=14% Similarity=0.039 Sum_probs=103.6
Q ss_pred EEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEec
Q 023864 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTH 188 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~ 188 (276)
.+.+ |+.++.+++ .+..|+.||+++++......-.... -..++. ++.+.+..-.++.+.++|..+.+.+.++..
T Consensus 138 ~~~~--d~~~l~~g~--~dg~i~iwd~~~~~~~~~~~~h~~~-v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~ 211 (435)
T 1p22_A 138 CLQY--DDQKIVSGL--RDNTIKIWDKNTLECKRILTGHTGS-VLCLQY-DERVIITGSSDSTVRVWDVNTGEMLNTLIH 211 (435)
T ss_dssp EEEC--CSSEEEEEE--SSSCEEEEESSSCCEEEEECCCSSC-EEEEEC-CSSEEEEEETTSCEEEEESSSCCEEEEECC
T ss_pred EEEE--CCCEEEEEe--CCCeEEEEeCCCCeEEEEEcCCCCc-EEEEEE-CCCEEEEEcCCCeEEEEECCCCcEEEEEcC
Confidence 4444 566665555 6789999999999987776533322 245555 445555566789999999999999999874
Q ss_pred CCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCCCCeEEEEeCCCCc
Q 023864 189 QMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 189 ~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s~d~I~vIDp~T~~ 268 (276)
....=..++.+++.|+....+..|.++|..+.+......+-. ++. ..++-+.+.+..|++.. .+ ..|.+.|.++++
T Consensus 212 h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~-~~v~~~~~~~~~l~s~~-~d-g~i~vwd~~~~~ 287 (435)
T 1p22_A 212 HCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLV-GHR-AAVNVVDFDDKYIVSAS-GD-RTIKVWNTSTCE 287 (435)
T ss_dssp CCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEEC-CCS-SCEEEEEEETTEEEEEE-TT-SEEEEEETTTCC
T ss_pred CCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEec-CCC-CcEEEEEeCCCEEEEEe-CC-CeEEEEECCcCc
Confidence 433445677888888887778899999999887654333322 111 23445567555555544 56 889999999976
Q ss_pred EE
Q 023864 269 SS 270 (276)
Q Consensus 269 v~ 270 (276)
.+
T Consensus 288 ~~ 289 (435)
T 1p22_A 288 FV 289 (435)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.17 E-value=0.0011 Score=59.53 Aligned_cols=167 Identities=11% Similarity=0.049 Sum_probs=110.3
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCC------------ceE---------
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGS------------YFG--------- 152 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~------------~Fg--------- 152 (276)
+...++.. ...-+..+.|++|++++.+++ .+..|++||..+++.......+.. .++
T Consensus 55 ~~~~~l~g-H~~~V~~~~~s~d~~~l~s~s--~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~ 131 (354)
T 2pbi_B 55 KTRRTLKG-HGNKVLCMDWCKDKRRIVSSS--QDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCS 131 (354)
T ss_dssp CEEEEEEC-CSSCEEEEEECTTSSEEEEEE--TTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEE
T ss_pred EEEEEecC-CCCeEEEEEECCCCCEEEEEe--CCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEE
Confidence 44555542 244567999999998888877 788999999999887665543311 010
Q ss_pred --------------------------EEEEEeC-CEEEEEEeeCCEEEEEeCCCCcEEEEEecCCCC--eeEEee--CCC
Q 023864 153 --------------------------EGLTLLG-EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKD--GWGLAT--DGK 201 (276)
Q Consensus 153 --------------------------EGit~~g-~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~E--GWGLT~--Dg~ 201 (276)
..+.+.. +......-.++++.+||.++.+.+.++.-.... ...+++ +|+
T Consensus 132 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~ 211 (354)
T 2pbi_B 132 VYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGN 211 (354)
T ss_dssp EEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCC
T ss_pred EEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCC
Confidence 1222222 222333345789999999999999998743122 233444 567
Q ss_pred EEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCCCCCeEEEEeCCCCcE
Q 023864 202 VLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 202 ~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~s~d~I~vIDp~T~~v 269 (276)
.|+....+..|.++|..+.+.+..+.... ..++-+.+. +|..+|..-.+ ..|.+.|..+++.
T Consensus 212 ~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~-----~~v~~v~~~p~~~~l~s~s~D-~~v~lwd~~~~~~ 274 (354)
T 2pbi_B 212 TFVSGGCDKKAMVWDMRSGQCVQAFETHE-----SDVNSVRYYPSGDAFASGSDD-ATCRLYDLRADRE 274 (354)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCS-----SCEEEEEECTTSSEEEEEETT-SCEEEEETTTTEE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCC-----CCeEEEEEeCCCCEEEEEeCC-CeEEEEECCCCcE
Confidence 78777677899999999998876654322 245556665 56666666566 8899999988654
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=3e-05 Score=75.41 Aligned_cols=152 Identities=10% Similarity=-0.038 Sum_probs=97.3
Q ss_pred ceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCC-----Cc
Q 023864 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNN-----LN 181 (276)
Q Consensus 107 TQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~t-----lk 181 (276)
...+.|++|++++.+++ ..|..||++++++......+.....-.+..+|++|+.. .++.++++|.++ .+
T Consensus 84 v~~~~~spd~~~~~~~~----~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~--~~~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 84 SFRTLDAGRGLVVLFTQ----GGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV--RNHNLYIARGGKLGEGMSR 157 (706)
T ss_dssp CEEEEETTTTEEEEEET----TEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE--ETTEEEEEECBCTTSCCCC
T ss_pred ceeEEECCCCeEEEEEC----CEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE--ECCeEEEEecCcccccCCC
Confidence 46899999977666543 79999999999876655444333322334445666653 689999999988 66
Q ss_pred EEEEEecCC----------------CCeeEEeeCCCEEEEEC---------------------------------CCceE
Q 023864 182 KLEEFTHQM----------------KDGWGLATDGKVLFGSD---------------------------------GSSML 212 (276)
Q Consensus 182 ~i~~~~~~~----------------~EGWGLT~Dg~~L~vSD---------------------------------GS~~L 212 (276)
.......+. ..+..++|||++|+.+. +..+|
T Consensus 158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l 237 (706)
T 2z3z_A 158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV 237 (706)
T ss_dssp CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence 544322221 14566889999987753 45789
Q ss_pred EEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCE-EEEEeCCC---CCeEEEEeCCCC
Q 023864 213 YQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGE-VWANVWQV---WPCIPYAYLQAF 267 (276)
Q Consensus 213 ~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~-lyANvw~s---~d~I~vIDp~T~ 267 (276)
+++|.++.+... +.... ..-..+..+.|. ||+ |++..... ...|.++|++++
T Consensus 238 ~~~d~~~~~~~~-~~~~~--~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g 294 (706)
T 2z3z_A 238 GIYHLATGKTVY-LQTGE--PKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETG 294 (706)
T ss_dssp EEEETTTTEEEE-CCCCS--CTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTC
T ss_pred EEEECCCCceEe-eccCC--CCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCC
Confidence 999999887542 22211 111234455665 564 66543221 028999999997
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.16 E-value=3.4e-05 Score=71.13 Aligned_cols=162 Identities=14% Similarity=0.090 Sum_probs=99.3
Q ss_pred CCCceEEEEecC----CEEEEEcCCCC---CCeEEEEeCCCCcEEEE---e-ecC----CCceEEEEEEe-CCEEEEEEe
Q 023864 104 RAFTQGLLYAEN----DTLFESTGLYG---RSSVRRVALETGKVEAI---N-QME----GSYFGEGLTLL-GEKLFQVTW 167 (276)
Q Consensus 104 ~aFTQGL~~~~d----g~LyeStG~yg---~S~I~~iDl~tgkv~~~---~-~l~----~~~FgEGit~~-g~~LyqlTw 167 (276)
.....||++++| +.||++.-..+ .+.|.+++++.+++... . .++ ..-++.+|++. ++.||+.+.
T Consensus 74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 345689999997 78998643111 27899999886543211 1 133 23467789986 469999974
Q ss_pred e-------------CCEEEEEeCCCC------------cEEEEEecC--CCCeeEEeeCCCEEEEEC-CCce--------
Q 023864 168 L-------------QKTGFIYDQNNL------------NKLEEFTHQ--MKDGWGLATDGKVLFGSD-GSSM-------- 211 (276)
Q Consensus 168 k-------------~~~v~V~D~~tl------------k~i~~~~~~--~~EGWGLT~Dg~~L~vSD-GS~~-------- 211 (276)
. .++++.+|++.- .....+.++ .+.|..+.+++..||++| |.+.
T Consensus 154 ~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~de 233 (352)
T 2ism_A 154 EVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDE 233 (352)
T ss_dssp CTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCE
T ss_pred CCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeE
Confidence 2 378999998751 122234444 345666667677899999 7665
Q ss_pred EEEEcCCCCc----EEEEEEeeeC--CEee------eeeeeeEEECCEEEEEeCCCCCeEEEEeCCCCc
Q 023864 212 LYQIDPQTLK----VIRKDIVRYK--GREV------RNLNELEFIKGEVWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 212 L~viDp~t~~----vi~~I~V~~~--g~pv------~~lNELE~idG~lyANvw~s~d~I~vIDp~T~~ 268 (276)
|..+.+...- .... .... ..|+ ..+.-|.+.+|.+|+..|.. +.|.+|+++..+
T Consensus 234 i~~i~~G~nyGwp~~~g~--~~~~~~~~p~~~~~~~~ap~G~~~~~G~l~v~~~~~-~~v~~v~~~~~~ 299 (352)
T 2ism_A 234 VNLIVPGGNYGWPRVVGR--GNDPRYRDPLYFWPQGFPPGNLAFFRGDLYVAGLRG-QALLRLVLEGER 299 (352)
T ss_dssp EEEECTTCBCCTTTCCSC--CCCTTSCCCSEECTTCCCEEEEEEETTEEEEEETTT-TEEEEEEEEEET
T ss_pred EEEeccCCcCCCCcccCC--CCCCCCcCCeEecCCCCCCcceEEECCEEEEEECCC-CEEEEEEECCCC
Confidence 5555432200 0000 0000 0121 13456778899999999999 999999988654
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=98.15 E-value=4.6e-05 Score=68.99 Aligned_cols=166 Identities=10% Similarity=0.029 Sum_probs=114.7
Q ss_pred eEEEEEEecCCCCCceEEEEecCC-EEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC-CceEEEEEEe--CCEEEEEEee
Q 023864 93 IQVVNEFPHDPRAFTQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEG-SYFGEGLTLL--GEKLFQVTWL 168 (276)
Q Consensus 93 ~~Vv~~~Phd~~aFTQGL~~~~dg-~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~-~~FgEGit~~--g~~LyqlTwk 168 (276)
.+.+.++.. .......+.|++++ .++.+++ .+..|+.||+++++......+.. ......+++. ++.++..--.
T Consensus 171 ~~~~~~~~~-h~~~v~~v~~s~~~~~~~~s~~--~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~ 247 (357)
T 4g56_B 171 KAVLKSYNA-HSSEVNCVAACPGKDTIFLSCG--EDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE 247 (357)
T ss_dssp TEEEEEECC-CSSCEEEEEECTTCSSCEEEEE--TTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES
T ss_pred CcEEEEEcC-CCCCEEEEEEccCCCceeeeec--cCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec
Confidence 456667653 34556799999876 4677666 67789999999998766654432 3334566665 4567777778
Q ss_pred CCEEEEEeCCCCcEEEEEecCCCCeeE--EeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-
Q 023864 169 QKTGFIYDQNNLNKLEEFTHQMKDGWG--LATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI- 244 (276)
Q Consensus 169 ~~~v~V~D~~tlk~i~~~~~~~~EGWG--LT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i- 244 (276)
++.+.+||..+.+.+.++......=+. +++||+.+++|= .+.+|.++|.++.++++.+ ++. ..++-+.|.
T Consensus 248 d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-----~H~-~~V~~vafsP 321 (357)
T 4g56_B 248 TGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-----SHR-DFVTGVAWSP 321 (357)
T ss_dssp SSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-----CCS-SCEEEEEECS
T ss_pred ccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-----CCC-CCEEEEEEeC
Confidence 899999999999999888643222233 567887665543 4678999999999877553 111 245667784
Q ss_pred -CCEEEEEeCCCCCeEEEEeCCCCc
Q 023864 245 -KGEVWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 245 -dG~lyANvw~s~d~I~vIDp~T~~ 268 (276)
||.++|..-.+ ..|.+=|..+.+
T Consensus 322 ~d~~~l~s~s~D-g~v~iW~~~~~~ 345 (357)
T 4g56_B 322 LDHSKFTTVGWD-HKVLHHHLPSEG 345 (357)
T ss_dssp SSTTEEEEEETT-SCEEEEECC---
T ss_pred CCCCEEEEEcCC-CeEEEEECCCCC
Confidence 68788887777 889888876643
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00045 Score=58.83 Aligned_cols=166 Identities=11% Similarity=0.055 Sum_probs=107.4
Q ss_pred eeEEEEEEecCC-CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCC-ceEEEEEEeC-CEEEEEEee
Q 023864 92 TIQVVNEFPHDP-RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGS-YFGEGLTLLG-EKLFQVTWL 168 (276)
Q Consensus 92 t~~Vv~~~Phd~-~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~-~FgEGit~~g-~~LyqlTwk 168 (276)
.++|++ .|--. ..|.+-|.|++++.| ++| .+..|+.||++||+.++...+..+ ..-..+++.. ++..+.--.
T Consensus 13 p~rvld-ap~~~~d~y~~~l~WS~~~~l--Avg--~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~ 87 (318)
T 4ggc_A 13 PDRILD-APEIRNDYYLNLVDWSSGNVL--AVA--LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTS 87 (318)
T ss_dssp CSEEEE-CTTCCCCTTCBCEEECTTSEE--EEE--ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEET
T ss_pred CCEEee-CCCCcccccceEEEECCCCEE--EEE--eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEEC
Confidence 445664 34212 234578999987744 355 367899999999999888876643 2334566653 455555667
Q ss_pred CCEEEEEeCCCCcEEEEEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEE-EEEEeeeCCEeeeeeeeeEEE-CC
Q 023864 169 QKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVI-RKDIVRYKGREVRNLNELEFI-KG 246 (276)
Q Consensus 169 ~~~v~V~D~~tlk~i~~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi-~~I~V~~~g~pv~~lNELE~i-dG 246 (276)
++++.++|.++.+.+.++......-..+..+++.|........+.+++..+.... ....-.. ...+.+.+. +|
T Consensus 88 Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 162 (318)
T 4ggc_A 88 SAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHS-----QEVCGLRWAPDG 162 (318)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCS-----SCEEEEEECTTS
T ss_pred CCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCcc-----CceEEEEEcCCC
Confidence 8999999999999999987543455667888888887766777777777665433 2222111 112222232 45
Q ss_pred EEEEEeCCCCCeEEEEeCCCCc
Q 023864 247 EVWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 247 ~lyANvw~s~d~I~vIDp~T~~ 268 (276)
...+..-.+ ..|.+.|.++++
T Consensus 163 ~~l~s~~~d-~~i~iwd~~~~~ 183 (318)
T 4ggc_A 163 RHLASGGND-NLVNVWPSAPGE 183 (318)
T ss_dssp SEEEEEETT-SCEEEEESSCBT
T ss_pred CEEEEEecC-cceeEEECCCCc
Confidence 555555455 778888887754
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00045 Score=64.55 Aligned_cols=169 Identities=9% Similarity=-0.035 Sum_probs=112.7
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCC--CeEEEEeCCCCcEEEEeecCCCceEEEEEEeCC--EEEEEEeeC
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGR--SSVRRVALETGKVEAINQMEGSYFGEGLTLLGE--KLFQVTWLQ 169 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~--S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~--~LyqlTwk~ 169 (276)
+.+.++.. ...-...+.|++||+++.+++.-.. ..|..|| +++.+....-... .-..+++..+ .++...-.+
T Consensus 107 ~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~d 182 (615)
T 1pgu_A 107 NVKSEFQV-LAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQ-RINACHLKQSRPMRSMTVGDD 182 (615)
T ss_dssp EEEEEEEC-CSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSS-CEEEEEECSSSSCEEEEEETT
T ss_pred cccchhhc-ccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCc-cEEEEEECCCCCcEEEEEeCC
Confidence 56666653 2344689999999876655552111 4666666 6766665543222 2345666543 366677788
Q ss_pred CEEEEEeCCCCcEEEEEecCCC-----CeeEEeeC-CCEEEEECCCceEEEEcCCCCcEEEEEEee--eCCEeeeeeeee
Q 023864 170 KTGFIYDQNNLNKLEEFTHQMK-----DGWGLATD-GKVLFGSDGSSMLYQIDPQTLKVIRKDIVR--YKGREVRNLNEL 241 (276)
Q Consensus 170 ~~v~V~D~~tlk~i~~~~~~~~-----EGWGLT~D-g~~L~vSDGS~~L~viDp~t~~vi~~I~V~--~~g~pv~~lNEL 241 (276)
+.+.+||..+.+.+.++..... ....+++| |+.|+.......|.++|..+.+.+.++.-. .... .++.+
T Consensus 183 ~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~---~v~~~ 259 (615)
T 1pgu_A 183 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQG---GIFAL 259 (615)
T ss_dssp TEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCS---CEEEE
T ss_pred CcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCC---ceEEE
Confidence 9999999999999999874311 12346788 889988777889999999999988776220 1112 34556
Q ss_pred EEECCEEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 242 EFIKGEVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 242 E~idG~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
.+.+|..++..-.+ ..|.+.|.++++.+
T Consensus 260 ~~~~~~~l~~~~~d-~~i~~wd~~~~~~~ 287 (615)
T 1pgu_A 260 SWLDSQKFATVGAD-ATIRVWDVTTSKCV 287 (615)
T ss_dssp EESSSSEEEEEETT-SEEEEEETTTTEEE
T ss_pred EEcCCCEEEEEcCC-CcEEEEECCCCcEE
Confidence 66666666555566 88999999996643
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=98.13 E-value=5.2e-05 Score=70.47 Aligned_cols=152 Identities=12% Similarity=0.049 Sum_probs=95.8
Q ss_pred CceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeCC--EEEEEeCCCC
Q 023864 106 FTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQK--TGFIYDQNNL 180 (276)
Q Consensus 106 FTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~~--~v~V~D~~tl 180 (276)
....+.|+|||+ |+.++..-|...|..||+++++......-+.. ...+++. +..|+.....++ .++++|.++.
T Consensus 224 ~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~--~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~ 301 (415)
T 2hqs_A 224 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSN--NTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG 301 (415)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSC--EEEEEECTTSSEEEEEECTTSSCEEEEEETTSS
T ss_pred cccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCc--ccceEECCCCCEEEEEECCCCCcEEEEEECCCC
Confidence 457899999986 65455544677899999999987432222222 3345554 556777775544 8999999887
Q ss_pred cEEEEEecCCCC--eeEEeeCCCEEEEEC---CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCE-EEEEeC
Q 023864 181 NKLEEFTHQMKD--GWGLATDGKVLFGSD---GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGE-VWANVW 253 (276)
Q Consensus 181 k~i~~~~~~~~E--GWGLT~Dg~~L~vSD---GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~-lyANvw 253 (276)
+. .++...... ...+++||+.|+++. |...|+++|+++.++. . +.... ....+.|. ||+ |+....
T Consensus 302 ~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~--l~~~~----~~~~~~~spdg~~l~~~s~ 373 (415)
T 2hqs_A 302 AP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-V--LSSTF----LDETPSLAPNGTMVIYSSS 373 (415)
T ss_dssp CC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-E--CCCSS----SCEEEEECTTSSEEEEEEE
T ss_pred CE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-E--ecCCC----CcCCeEEcCCCCEEEEEEc
Confidence 64 333322111 234678999987743 4579999999998773 2 22211 34445565 554 443332
Q ss_pred CCCC--eEEEEeCCCCc
Q 023864 254 QVWP--CIPYAYLQAFG 268 (276)
Q Consensus 254 ~s~d--~I~vIDp~T~~ 268 (276)
.. + .|.++|.+++.
T Consensus 374 ~~-~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 374 QG-MGSVLNLVSTDGRF 389 (415)
T ss_dssp ET-TEEEEEEEETTSCC
T ss_pred CC-CccEEEEEECCCCc
Confidence 22 3 79999988654
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00025 Score=66.84 Aligned_cols=159 Identities=11% Similarity=0.068 Sum_probs=111.6
Q ss_pred CCCCCceEEEEec-CCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC-------CceEEEEEE---e-CCEEEEEEee-
Q 023864 102 DPRAFTQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQMEG-------SYFGEGLTL---L-GEKLFQVTWL- 168 (276)
Q Consensus 102 d~~aFTQGL~~~~-dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~-------~~FgEGit~---~-g~~LyqlTwk- 168 (276)
.+..|.+|..|+. +++||.|.= ....|.+||+..+.+... .++. ...+-||.+ + .++||++.-.
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l--~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~ 86 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNL--YKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNA 86 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEET--TTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEET
T ss_pred CcccCCcCccCcCCCCEEEEEec--cCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccc
Confidence 4789999999986 489999864 668999999987766544 4543 345678998 3 4799997432
Q ss_pred ------------CCEEEEEeCC---CCcEEEEEecC--CCC----------ee-EEeeCC-CEEEEEC-CC-ceEEEEcC
Q 023864 169 ------------QKTGFIYDQN---NLNKLEEFTHQ--MKD----------GW-GLATDG-KVLFGSD-GS-SMLYQIDP 217 (276)
Q Consensus 169 ------------~~~v~V~D~~---tlk~i~~~~~~--~~E----------GW-GLT~Dg-~~L~vSD-GS-~~L~viDp 217 (276)
.+.+..||+. |.+.+..+... ..+ |+ .++-|. ...||+| .. ..|+.+||
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p 166 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA 166 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence 5889999999 88888777642 111 12 366655 4889988 46 89999999
Q ss_pred CCCcEEEEEEeee-CCEeeeeeeeeEEE-CC-EEEEEeCCCCCeEEEEeCCC
Q 023864 218 QTLKVIRKDIVRY-KGREVRNLNELEFI-KG-EVWANVWQVWPCIPYAYLQA 266 (276)
Q Consensus 218 ~t~~vi~~I~V~~-~g~pv~~lNELE~i-dG-~lyANvw~s~d~I~vIDp~T 266 (276)
..-++. ...... +......+|-+.+. || .|+|+-- . ..+.++|.++
T Consensus 167 dG~~~~-~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~-g~L~~fD~~~ 215 (334)
T 2p9w_A 167 DGKTVS-TFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-P-RALTAFDVSK 215 (334)
T ss_dssp TSCCEE-EEEECCCCSSSCCSCSEEEEETTTTEEEEESS-S-SSEEEEECSS
T ss_pred CCCEEe-eeeecCCCcccccCcceEEEeCCCCEEEEEcC-C-CeEEEEcCCC
Confidence 855332 222221 12233468999999 56 5667765 7 9999999774
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=98.11 E-value=8.9e-05 Score=63.89 Aligned_cols=123 Identities=11% Similarity=0.091 Sum_probs=88.7
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEE
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGF 173 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~ 173 (276)
+.+.++.- .......+.|+||+.++.+++ .+..|+.||+.+++.+....-... -..+....+..+++.-.++.+.
T Consensus 206 ~~~~~~~~-h~~~v~~~~~s~~~~~l~s~s--~Dg~i~iwd~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~d~~i~ 280 (340)
T 4aow_A 206 KLKTNHIG-HTGYLNTVTVSPDGSLCASGG--KDGQAMLWDLNEGKHLYTLDGGDI--INALCFSPNRYWLCAATGPSIK 280 (340)
T ss_dssp EEEEEECC-CSSCEEEEEECTTSSEEEEEE--TTCEEEEEETTTTEEEEEEECSSC--EEEEEECSSSSEEEEEETTEEE
T ss_pred ceeeEecC-CCCcEEEEEECCCCCEEEEEe--CCCeEEEEEeccCceeeeecCCce--EEeeecCCCCceeeccCCCEEE
Confidence 45555542 244567999999998888777 678999999999998877665443 3456666655566666799999
Q ss_pred EEeCCCCcEEEEEecC--------C-C--CeeEEeeCCCEEEEECCCceEEEEcCCCCc
Q 023864 174 IYDQNNLNKLEEFTHQ--------M-K--DGWGLATDGKVLFGSDGSSMLYQIDPQTLK 221 (276)
Q Consensus 174 V~D~~tlk~i~~~~~~--------~-~--EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~ 221 (276)
+||.++.+.+.+++.+ . . -...+++||+.|+....+..|.++|.+|++
T Consensus 281 iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 281 IWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred EEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 9999999888777521 0 1 123457899999887667889999988874
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00015 Score=61.47 Aligned_cols=129 Identities=15% Similarity=0.173 Sum_probs=89.9
Q ss_pred EEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEE
Q 023864 95 VVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFI 174 (276)
Q Consensus 95 Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V 174 (276)
.+..+..........+.+++++.|+ +++ .+..|+.||+.+++.+....-... .-..+++..+..+...-.++.+.+
T Consensus 175 ~~~~~~~~~~~~i~~~~~~~~~~~~-~~~--~dg~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~l~~~~~dg~v~i 250 (313)
T 3odt_A 175 VIKTFSGIHNDVVRHLAVVDDGHFI-SCS--NDGLIKLVDMHTGDVLRTYEGHES-FVYCIKLLPNGDIVSCGEDRTVRI 250 (313)
T ss_dssp EEEEECSSCSSCEEEEEEEETTEEE-EEE--TTSEEEEEETTTCCEEEEEECCSS-CEEEEEECTTSCEEEEETTSEEEE
T ss_pred eEEEEeccCcccEEEEEEcCCCeEE-Ecc--CCCeEEEEECCchhhhhhhhcCCc-eEEEEEEecCCCEEEEecCCEEEE
Confidence 4445543345667899999998944 444 677899999999998887754332 234677765423455567899999
Q ss_pred EeCCCCcEEEEEecCCCCeeE--EeeCCCEEEEECCCceEEEEcCCCCcEEEEEEe
Q 023864 175 YDQNNLNKLEEFTHQMKDGWG--LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIV 228 (276)
Q Consensus 175 ~D~~tlk~i~~~~~~~~EGWG--LT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V 228 (276)
||..+.+.+.++......-+. +++||+ ++++..+..|.++|.++.+.+.+...
T Consensus 251 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~~ 305 (313)
T 3odt_A 251 WSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDEI 305 (313)
T ss_dssp ECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC----
T ss_pred EECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehhhh
Confidence 999999999999765323334 567887 55556688999999998877655544
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00024 Score=64.42 Aligned_cols=161 Identities=10% Similarity=0.005 Sum_probs=112.3
Q ss_pred CCceEEE--EecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecC-CCceEEEEEEe-CCEEEEEEeeCCEEEEEeCCCC
Q 023864 105 AFTQGLL--YAENDTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNL 180 (276)
Q Consensus 105 aFTQGL~--~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~-~~~FgEGit~~-g~~LyqlTwk~~~v~V~D~~tl 180 (276)
.+.-.+. +++|+.++.+++ .+..|+.||+.+++.+.....+ ..-.-..+++. ++++....-.++.+.+||..+.
T Consensus 169 ~~~~~~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 246 (437)
T 3gre_A 169 EYAVRMRAFVNEEKSLLVALT--NLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN 246 (437)
T ss_dssp CCEEEEEEEECSSCEEEEEEE--TTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT
T ss_pred cCceEEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc
Confidence 3444454 446777777666 6789999999999998887653 12234466665 3455556667899999999999
Q ss_pred cEEEEEecCCCCe-eEE----e--eCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeC--------------------C-
Q 023864 181 NKLEEFTHQMKDG-WGL----A--TDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYK--------------------G- 232 (276)
Q Consensus 181 k~i~~~~~~~~EG-WGL----T--~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~--------------------g- 232 (276)
+.+.++..+.... ..+ + +|++.|+.+..+..|.++|..+.+.++.+.-... |
T Consensus 247 ~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 326 (437)
T 3gre_A 247 VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGI 326 (437)
T ss_dssp EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCC
T ss_pred cEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceeccc
Confidence 9999987542111 223 2 4566777777778999999999998887763310 0
Q ss_pred EeeeeeeeeEEECCEEEEEeCCCCCeEEEEeCCCCc
Q 023864 233 REVRNLNELEFIKGEVWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 233 ~pv~~lNELE~idG~lyANvw~s~d~I~vIDp~T~~ 268 (276)
.....++-|.+.+|...+..-.+ ..|.+-|.++++
T Consensus 327 ~~~~~v~~l~~~~~~~l~s~~~d-~~i~~wd~~~~~ 361 (437)
T 3gre_A 327 RSLNALSTISVSNDKILLTDEAT-SSIVMFSLNELS 361 (437)
T ss_dssp CSGGGGCCEEEETTEEEEEEGGG-TEEEEEETTCGG
T ss_pred ccCCceEEEEECCceEEEecCCC-CeEEEEECCCcc
Confidence 01123566778888877777677 999999999876
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00016 Score=62.55 Aligned_cols=160 Identities=9% Similarity=0.053 Sum_probs=104.0
Q ss_pred EEEEecCCCCCceEEEEecC---CEEEEEcCCCCCCeEEEEeCCCCc-EEEEeecCCCceEEEEEEe-------CCEEEE
Q 023864 96 VNEFPHDPRAFTQGLLYAEN---DTLFESTGLYGRSSVRRVALETGK-VEAINQMEGSYFGEGLTLL-------GEKLFQ 164 (276)
Q Consensus 96 v~~~Phd~~aFTQGL~~~~d---g~LyeStG~yg~S~I~~iDl~tgk-v~~~~~l~~~~FgEGit~~-------g~~Lyq 164 (276)
+..+.| ......+.|+++ |.++.+++ .+..|+.||+++++ ......-... --..+... ++++..
T Consensus 59 ~~~~~~--~~~v~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~s~~~~~l~ 133 (357)
T 3i2n_A 59 LREIEK--AKPIKCGTFGATSLQQRYLATGD--FGGNLHIWNLEAPEMPVYSVKGHKE-IINAIDGIGGLGIGEGAPEIV 133 (357)
T ss_dssp EEEEEE--SSCEEEEECTTCCTTTCCEEEEE--TTSCEEEECTTSCSSCSEEECCCSS-CEEEEEEESGGGCC-CCCEEE
T ss_pred eeeecc--cCcEEEEEEcCCCCCCceEEEec--CCCeEEEEeCCCCCccEEEEEeccc-ceEEEeeccccccCCCccEEE
Confidence 444566 344579999988 56666555 67789999999987 5444432222 12334321 244455
Q ss_pred EEeeCCEEEEEeCCCCc-EEEEEecCC----CCeeEEe------eCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCE
Q 023864 165 VTWLQKTGFIYDQNNLN-KLEEFTHQM----KDGWGLA------TDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGR 233 (276)
Q Consensus 165 lTwk~~~v~V~D~~tlk-~i~~~~~~~----~EGWGLT------~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~ 233 (276)
..-.++.+.+||..+.+ .+.++.... ..-+.++ +|++.|+....+..|.++|..+.+.+......
T Consensus 134 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---- 209 (357)
T 3i2n_A 134 TGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIK---- 209 (357)
T ss_dssp EEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECS----
T ss_pred EEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCC----
Confidence 55678999999999887 677775321 1344554 78999988877889999999999875443332
Q ss_pred eeeeeeeeEEE----CCEEEEEeCCCCCeEEEEeCCCC
Q 023864 234 EVRNLNELEFI----KGEVWANVWQVWPCIPYAYLQAF 267 (276)
Q Consensus 234 pv~~lNELE~i----dG~lyANvw~s~d~I~vIDp~T~ 267 (276)
..++.+.+. +|..++..-.. ..|.+.|.+++
T Consensus 210 --~~v~~~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~ 244 (357)
T 3i2n_A 210 --NGVCSLEFDRKDISMNKLVATSLE-GKFHVFDMRTQ 244 (357)
T ss_dssp --SCEEEEEESCSSSSCCEEEEEEST-TEEEEEEEEEE
T ss_pred --CceEEEEcCCCCCCCCEEEEECCC-CeEEEEeCcCC
Confidence 145556676 45545445456 78888887764
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00011 Score=64.54 Aligned_cols=156 Identities=10% Similarity=0.060 Sum_probs=106.7
Q ss_pred CCCceEEEEec-CCEEEEEcCCCCCCeEEEEeCCCCcEEEEeec------------CCCceEEEEEEe--CCEEEEEEee
Q 023864 104 RAFTQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQM------------EGSYFGEGLTLL--GEKLFQVTWL 168 (276)
Q Consensus 104 ~aFTQGL~~~~-dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l------------~~~~FgEGit~~--g~~LyqlTwk 168 (276)
..-...+.|+| ++.++.+++ .+..|+.||+++++....... +..---..+++. ++.++...-.
T Consensus 43 ~~~v~~~~~s~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 120 (408)
T 4a11_B 43 GGGINTLDIEPVEGRYMLSGG--SDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF 120 (408)
T ss_dssp SSCEEEEEECTTTCCEEEEEE--TTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEET
T ss_pred CCcEEEEEEecCCCCEEEEEc--CCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeC
Confidence 45567999999 888777666 677899999998764333220 111123455554 3456666667
Q ss_pred CCEEEEEeCCCCcEEEEEecCCCCeeE--Eee---CCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEE
Q 023864 169 QKTGFIYDQNNLNKLEEFTHQMKDGWG--LAT---DGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEF 243 (276)
Q Consensus 169 ~~~v~V~D~~tlk~i~~~~~~~~EGWG--LT~---Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~ 243 (276)
++.+.+||..+.+.+..+..+ ..... +.+ ++..+++......|.++|..+.+.+..+.-.. ..++.+.+
T Consensus 121 d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-----~~v~~~~~ 194 (408)
T 4a11_B 121 DKTLKVWDTNTLQTADVFNFE-ETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHR-----QEILAVSW 194 (408)
T ss_dssp TSEEEEEETTTTEEEEEEECS-SCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCC-----SCEEEEEE
T ss_pred CCeEEEeeCCCCccceeccCC-CceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCC-----CcEEEEEE
Confidence 899999999999999998865 23333 444 44577777778899999999988776654322 13455566
Q ss_pred E-CCE-EEEEeCCCCCeEEEEeCCCCc
Q 023864 244 I-KGE-VWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 244 i-dG~-lyANvw~s~d~I~vIDp~T~~ 268 (276)
. +|. ++|..-.+ ..|.+.|..+++
T Consensus 195 ~~~~~~ll~~~~~d-g~i~i~d~~~~~ 220 (408)
T 4a11_B 195 SPRYDYILATASAD-SRVKLWDVRRAS 220 (408)
T ss_dssp CSSCTTEEEEEETT-SCEEEEETTCSS
T ss_pred CCCCCcEEEEEcCC-CcEEEEECCCCC
Confidence 6 343 66666566 889999987754
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.08 E-value=7.2e-05 Score=65.79 Aligned_cols=163 Identities=10% Similarity=-0.024 Sum_probs=109.8
Q ss_pred CCCceEEEEec-CCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeCCEEEEEeCCCC
Q 023864 104 RAFTQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNL 180 (276)
Q Consensus 104 ~aFTQGL~~~~-dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~~~v~V~D~~tl 180 (276)
..-...+.|++ ++.++.+++ .+..|+.||+++++.......+.......+... ++.++...-.++.+.+||..+.
T Consensus 99 ~~~v~~~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 176 (408)
T 4a11_B 99 RYSVETVQWYPHDTGMFTSSS--FDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG 176 (408)
T ss_dssp SSCEEEEEECTTCTTCEEEEE--TTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS
T ss_pred CCcEEEEEEccCCCcEEEEEe--CCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc
Confidence 45567999998 566666666 678999999999999888887766554333333 2447777788999999999999
Q ss_pred cEEEEEecCCC--CeeEEeeCCCE-EEEECCCceEEEEcCCCCc-EEEEEEeeeC----------CEeeeeeeeeEEE-C
Q 023864 181 NKLEEFTHQMK--DGWGLATDGKV-LFGSDGSSMLYQIDPQTLK-VIRKDIVRYK----------GREVRNLNELEFI-K 245 (276)
Q Consensus 181 k~i~~~~~~~~--EGWGLT~Dg~~-L~vSDGS~~L~viDp~t~~-vi~~I~V~~~----------g~pv~~lNELE~i-d 245 (276)
+.+.++.-... ....++++++. |+....+..|.++|..+.+ .+..+..... ...-..++.+.+. +
T Consensus 177 ~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 256 (408)
T 4a11_B 177 SCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD 256 (408)
T ss_dssp CCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT
T ss_pred ceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC
Confidence 98888863211 23446788886 5555567889999998765 2222211100 0011234555665 5
Q ss_pred CEEEEEeCCCCCeEEEEeCCCCcE
Q 023864 246 GEVWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 246 G~lyANvw~s~d~I~vIDp~T~~v 269 (276)
|...+..-.+ ..|.+.|..+++.
T Consensus 257 ~~~l~~~~~d-g~i~vwd~~~~~~ 279 (408)
T 4a11_B 257 GLHLLTVGTD-NRMRLWNSSNGEN 279 (408)
T ss_dssp SSEEEEEETT-SCEEEEETTTCCB
T ss_pred CCEEEEecCC-CeEEEEECCCCcc
Confidence 5555555566 8899999998764
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=9.1e-05 Score=69.85 Aligned_cols=154 Identities=11% Similarity=0.133 Sum_probs=97.4
Q ss_pred CCceEEEEec--CC--EEEEEcCCCCCCeEEEEe--CCCCcEEEEeecCC--CceEEEEEEe-CCEEEEEEe--------
Q 023864 105 AFTQGLLYAE--ND--TLFESTGLYGRSSVRRVA--LETGKVEAINQMEG--SYFGEGLTLL-GEKLFQVTW-------- 167 (276)
Q Consensus 105 aFTQGL~~~~--dg--~LyeStG~yg~S~I~~iD--l~tgkv~~~~~l~~--~~FgEGit~~-g~~LyqlTw-------- 167 (276)
-.+-|+.+.. || +||+..-..+.+.|..++ .+++.......+.. -.+.-.++++ ++++|+-+.
T Consensus 112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~ 191 (355)
T 3sre_A 112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYL 191 (355)
T ss_dssp CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHH
T ss_pred eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCccc
Confidence 4566999866 35 588875544567766654 54444332223332 2345566665 589998875
Q ss_pred ---------eCCEEEEEeCCCCcEE-EEEecCCCCeeEEeeCCCEEEEEC-CCceEEEEcCC-CCcEEEEEEeeeCCEee
Q 023864 168 ---------LQKTGFIYDQNNLNKL-EEFTHQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQ-TLKVIRKDIVRYKGREV 235 (276)
Q Consensus 168 ---------k~~~v~V~D~~tlk~i-~~~~~~~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~-t~~vi~~I~V~~~g~pv 235 (276)
..+.++.||+.+.+++ ..+.. +.|.++++||+.||++| +..+|+.+|.+ +.++...-.+...|
T Consensus 192 ~~~e~~~~~~~g~vyr~d~~~~~~~~~~l~~--pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g--- 266 (355)
T 3sre_A 192 KSWEMHLGLAWSFVTYYSPNDVRVVAEGFDF--ANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDT--- 266 (355)
T ss_dssp HHHHHHTTCCCEEEEEECTTCCEEEEEEESS--EEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSS---
T ss_pred ccchhhccCCccEEEEEECCeEEEeecCCcc--cCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCC---
Confidence 2468889999765544 23443 58999999999999999 78999998864 34443221122233
Q ss_pred eeeeeeEEE--CCEEEE-EeCCCCCeEEEEeCC
Q 023864 236 RNLNELEFI--KGEVWA-NVWQVWPCIPYAYLQ 265 (276)
Q Consensus 236 ~~lNELE~i--dG~lyA-Nvw~s~d~I~vIDp~ 265 (276)
.+.-|.+. +|.||+ +.|.. -+|.++||+
T Consensus 267 -~PDGi~vD~e~G~lwva~~~~g-~~v~~~~P~ 297 (355)
T 3sre_A 267 -LVDNISVDPVTGDLWVGCHPNG-MRIFFYDAE 297 (355)
T ss_dssp -EEEEEEECTTTCCEEEEEESCH-HHHHSCCTT
T ss_pred -CCceEEEeCCCCcEEEEecCCc-eEEEEECCC
Confidence 33445566 389998 55775 566666665
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0025 Score=56.19 Aligned_cols=163 Identities=13% Similarity=0.022 Sum_probs=105.8
Q ss_pred EEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEEEEEeeCCEEEE
Q 023864 96 VNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFI 174 (276)
Q Consensus 96 v~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~LyqlTwk~~~v~V 174 (276)
+.++.. ....+..+.|++||.++.+++ .+..|+.||+++++......-... --..+++.. +.+.+..-.++++.+
T Consensus 58 ~~~~~~-h~~~v~~~~~s~dg~~l~s~s--~D~~v~~wd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~s~D~~i~v 133 (319)
T 3frx_A 58 VRSFKG-HSHIVQDCTLTADGAYALSAS--WDKTLRLWDVATGETYQRFVGHKS-DVMSVDIDKKASMIISGSRDKTIKV 133 (319)
T ss_dssp EEEEEC-CSSCEEEEEECTTSSEEEEEE--TTSEEEEEETTTTEEEEEEECCSS-CEEEEEECTTSCEEEEEETTSCEEE
T ss_pred ceEEeC-CcccEEEEEECCCCCEEEEEe--CCCEEEEEECCCCCeeEEEccCCC-cEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 445542 355668999999998877777 788999999999998776542222 123455543 455556667889999
Q ss_pred EeCCCCcEEEEEecCCCCee--EEee------CCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-C
Q 023864 175 YDQNNLNKLEEFTHQMKDGW--GLAT------DGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-K 245 (276)
Q Consensus 175 ~D~~tlk~i~~~~~~~~EGW--GLT~------Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-d 245 (276)
||.+. +.+.++.-....-. .+.+ |+..|+....+..|.++|.++++....+.-.. ..++-+.+. +
T Consensus 134 wd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~-----~~v~~~~~sp~ 207 (319)
T 3frx_A 134 WTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN-----SNINTLTASPD 207 (319)
T ss_dssp EETTS-CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCC-----SCEEEEEECTT
T ss_pred EECCC-CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCC-----CcEEEEEEcCC
Confidence 99865 34444431111111 2333 34456665568899999999988765543211 234555665 5
Q ss_pred CEEEEEeCCCCCeEEEEeCCCCcE
Q 023864 246 GEVWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 246 G~lyANvw~s~d~I~vIDp~T~~v 269 (276)
|...|..-.+ ..|.+-|.++++.
T Consensus 208 g~~l~s~~~d-g~i~iwd~~~~~~ 230 (319)
T 3frx_A 208 GTLIASAGKD-GEIMLWNLAAKKA 230 (319)
T ss_dssp SSEEEEEETT-CEEEEEETTTTEE
T ss_pred CCEEEEEeCC-CeEEEEECCCCcE
Confidence 6777776666 8999999998554
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00074 Score=59.59 Aligned_cols=160 Identities=9% Similarity=0.047 Sum_probs=104.3
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-------CEEEEEE
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-------EKLFQVT 166 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-------~~LyqlT 166 (276)
+.++++.. ...-...+.|++++.++.+++ .+..|+.||++...+ ... .+....-..+.+.. +.++...
T Consensus 98 ~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s--~D~~i~vwd~~~~~~-~~~-~~h~~~v~~~~~~~~~~~~~~~~~l~s~ 172 (319)
T 3frx_A 98 ETYQRFVG-HKSDVMSVDIDKKASMIISGS--RDKTIKVWTIKGQCL-ATL-LGHNDWVSQVRVVPNEKADDDSVTIISA 172 (319)
T ss_dssp EEEEEEEC-CSSCEEEEEECTTSCEEEEEE--TTSCEEEEETTSCEE-EEE-CCCSSCEEEEEECCC------CCEEEEE
T ss_pred CeeEEEcc-CCCcEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeE-EEE-eccCCcEEEEEEccCCCCCCCccEEEEE
Confidence 45566642 244457999999988888777 778999999975543 332 12222223444432 2355556
Q ss_pred eeCCEEEEEeCCCCcEEEEEecCCC--CeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE
Q 023864 167 WLQKTGFIYDQNNLNKLEEFTHQMK--DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI 244 (276)
Q Consensus 167 wk~~~v~V~D~~tlk~i~~~~~~~~--EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i 244 (276)
-.++.+.+||..+.+...++.-... ....+++||+.|.....+..|.++|..+.+.+.++.... .++.+.+.
T Consensus 173 ~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~v~~~~~s 246 (319)
T 3frx_A 173 GNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD------EVFSLAFS 246 (319)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCS------CEEEEEEC
T ss_pred eCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC------cEEEEEEc
Confidence 6789999999999998888752211 233467899998887778899999999999888776432 34455565
Q ss_pred -CCEEEEEeCCCCCeEEEEeCCC
Q 023864 245 -KGEVWANVWQVWPCIPYAYLQA 266 (276)
Q Consensus 245 -dG~lyANvw~s~d~I~vIDp~T 266 (276)
+|...|.. .. +.|.+.|.++
T Consensus 247 p~~~~la~~-~~-~~i~v~~~~~ 267 (319)
T 3frx_A 247 PNRYWLAAA-TA-TGIKVFSLDP 267 (319)
T ss_dssp SSSSEEEEE-ET-TEEEEEEETT
T ss_pred CCCCEEEEE-cC-CCcEEEEeCc
Confidence 44433333 24 5566666655
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00091 Score=61.86 Aligned_cols=163 Identities=11% Similarity=0.088 Sum_probs=99.5
Q ss_pred eeeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCc-EEEEeec--CCCceEEEEEEeC-----CE
Q 023864 90 IYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGK-VEAINQM--EGSYFGEGLTLLG-----EK 161 (276)
Q Consensus 90 ~~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgk-v~~~~~l--~~~~FgEGit~~g-----~~ 161 (276)
-++++++.+ .-....|+++++||+||++.- . ..|+++| .+|+ .+..+++ ...--..||+++. ++
T Consensus 18 ~~~~~~va~----~l~~P~~ia~~pdG~l~V~e~--~-g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~ 89 (354)
T 3a9g_A 18 KFKISEVAS----DLEVPWSIAPLGGGRYLVTER--P-GRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSW 89 (354)
T ss_dssp CEEEEEEEC----SCSCEEEEEEEETTEEEEEET--T-TEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCE
T ss_pred CeEEEEEeC----CCCCCeEEEEcCCCeEEEEeC--C-CEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCE
Confidence 356666654 233456999999999998754 3 7899998 4565 2222221 1112356889884 59
Q ss_pred EEEEEee---C----CEEEEEeCCCC-------cE-EEEEecC---CCCeeEEeeCCCEEEEECCC--------------
Q 023864 162 LFQVTWL---Q----KTGFIYDQNNL-------NK-LEEFTHQ---MKDGWGLATDGKVLFGSDGS-------------- 209 (276)
Q Consensus 162 LyqlTwk---~----~~v~V~D~~tl-------k~-i~~~~~~---~~EGWGLT~Dg~~L~vSDGS-------------- 209 (276)
||+.... + +++..++.+.- +. +..++.. .+.+..+.+|| .||+++|+
T Consensus 90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG-~Lyvt~G~~~~~~~~~d~~~~~ 168 (354)
T 3a9g_A 90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG-MLYITTGDAADPRLAQDLSSLA 168 (354)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS-CEEEECCCTTCGGGGTCTTCCS
T ss_pred EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC-cEEEEECCCCCCccccCCCCCC
Confidence 9999875 3 78899987543 22 2334421 23556677888 59999874
Q ss_pred ceEEEEcCCCCcEEE-----EEEeeeCCEeeeeeeeeEEEC--CEEEEEeCCC--CCeEEEEeC
Q 023864 210 SMLYQIDPQTLKVIR-----KDIVRYKGREVRNLNELEFIK--GEVWANVWQV--WPCIPYAYL 264 (276)
Q Consensus 210 ~~L~viDp~t~~vi~-----~I~V~~~g~pv~~lNELE~id--G~lyANvw~s--~d~I~vIDp 264 (276)
.+|..+|+.. ++-. ...+-.. -+.+++.|.+.. |.||++.... ++.|-+|.+
T Consensus 169 G~I~ri~~dG-~~p~~npf~~~~i~a~--G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~ 229 (354)
T 3a9g_A 169 GKILRVDEEG-RPPADNPFPNSPIWSY--GHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILK 229 (354)
T ss_dssp SEEEEECTTS-CCCTTSSSTTCCEEEE--CCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECT
T ss_pred eEEEEEcCCC-CCCCCCCCCCCcEEEE--ccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecC
Confidence 3677777753 1100 0001111 135788888884 7899877665 135777765
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00021 Score=64.28 Aligned_cols=168 Identities=11% Similarity=-0.047 Sum_probs=108.4
Q ss_pred EEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCC-CcEEEEee-----cC-CCceEEEEEEeCC--EEEEEEee
Q 023864 98 EFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALET-GKVEAINQ-----ME-GSYFGEGLTLLGE--KLFQVTWL 168 (276)
Q Consensus 98 ~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~t-gkv~~~~~-----l~-~~~FgEGit~~g~--~LyqlTwk 168 (276)
.+..........+.|++++.++.+ | .+..|+.||+++ ++...... +. ..-.-..+++..+ .++...-.
T Consensus 171 ~~~~~h~~~v~~~~~~~~~~~l~s-~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~ 247 (447)
T 3dw8_B 171 IFANAHTYHINSISINSDYETYLS-A--DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS 247 (447)
T ss_dssp EECSCCSSCCCEEEECTTSSEEEE-E--CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET
T ss_pred EeccCCCcceEEEEEcCCCCEEEE-e--CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC
Confidence 443334556679999999887765 4 488999999994 44444331 11 1122345666542 56666667
Q ss_pred CCEEEEEeCCCCcE----EEEEecCC--------------CCeeEEeeCCCEEEEECCCceEEEEcCCC-CcEEEEEEee
Q 023864 169 QKTGFIYDQNNLNK----LEEFTHQM--------------KDGWGLATDGKVLFGSDGSSMLYQIDPQT-LKVIRKDIVR 229 (276)
Q Consensus 169 ~~~v~V~D~~tlk~----i~~~~~~~--------------~EGWGLT~Dg~~L~vSDGS~~L~viDp~t-~~vi~~I~V~ 229 (276)
++.+.+||..+.+. +..+.... -....+++||+.|+..+. ..|.++|..+ .+.+.++...
T Consensus 248 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~ 326 (447)
T 3dw8_B 248 KGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVH 326 (447)
T ss_dssp TSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESC
T ss_pred CCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecc
Confidence 89999999998886 67775431 123346789999988766 9999999987 7666666543
Q ss_pred eCCE----------eeeeeeeeEEE-CCEEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 230 YKGR----------EVRNLNELEFI-KGEVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 230 ~~g~----------pv~~lNELE~i-dG~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
..-. .+.....+.+. +|...|..-.+ ..|.+.|.++++.+
T Consensus 327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~d-g~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYN-NFFRMFDRNTKRDI 377 (447)
T ss_dssp GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECST-TEEEEEETTTCCEE
T ss_pred ccccccccccccccccccceEEEECCCCCEEEEeccC-CEEEEEEcCCCcce
Confidence 2100 00001125555 55544666566 89999999997765
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00031 Score=70.12 Aligned_cols=161 Identities=12% Similarity=0.061 Sum_probs=108.7
Q ss_pred ceEEEEec-CCE----EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCC----ceEEEEEEeCCEEEEEEe-----eCCEE
Q 023864 107 TQGLLYAE-NDT----LFESTGLYGRSSVRRVALETGKVEAINQMEGS----YFGEGLTLLGEKLFQVTW-----LQKTG 172 (276)
Q Consensus 107 TQGL~~~~-dg~----LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~----~FgEGit~~g~~LyqlTw-----k~~~v 172 (276)
..|+.+.+ +++ +|..+. +..|..+|.+||+++=+..++.. .+...-++.++++|+-+. .++.+
T Consensus 108 ~~g~av~p~~g~~~~rV~v~t~---dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v 184 (599)
T 1w6s_A 108 NRGLAYWPGDGKTPALILKTQL---DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYL 184 (599)
T ss_dssp CCCCEEECCCSSSCCEEEEECT---TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEE
T ss_pred ccceEEEecCCcceeEEEEEcC---CCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeE
Confidence 45788832 466 998654 46899999999999888877641 111223456889998775 36899
Q ss_pred EEEeCCCCcEEEEEecCCCC-------------------------------------ee---EEeeCCCEEEEECCC---
Q 023864 173 FIYDQNNLNKLEEFTHQMKD-------------------------------------GW---GLATDGKVLFGSDGS--- 209 (276)
Q Consensus 173 ~V~D~~tlk~i~~~~~~~~E-------------------------------------GW---GLT~Dg~~L~vSDGS--- 209 (276)
+.||++|.+++-++....+. -| .+.++...+|+..|.
T Consensus 185 ~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p 264 (599)
T 1w6s_A 185 TAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAP 264 (599)
T ss_dssp EEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSC
T ss_pred EEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCcc
Confidence 99999999999998754211 12 244567789987653
Q ss_pred -------------ceEEEEcCCCCcEEEEEEeeeC------CEeeeeeeeeEEECC---EEEEEeCCCCCeEEEEeCCCC
Q 023864 210 -------------SMLYQIDPQTLKVIRKDIVRYK------GREVRNLNELEFIKG---EVWANVWQVWPCIPYAYLQAF 267 (276)
Q Consensus 210 -------------~~L~viDp~t~~vi~~I~V~~~------g~pv~~lNELE~idG---~lyANvw~s~d~I~vIDp~T~ 267 (276)
+.|+-+|++|++++=+.+.... +..-..+-+++.+|| .+++..-.+ ..+.++|.+||
T Consensus 265 ~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~-G~l~~lD~~tG 343 (599)
T 1w6s_A 265 WNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRN-GIVYTLDRTDG 343 (599)
T ss_dssp SCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTT-SEEEEEETTTC
T ss_pred ccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCC-cEEEEEECCCC
Confidence 5899999999999866665421 100011212222467 555544456 89999999998
Q ss_pred cEEE
Q 023864 268 GSSL 271 (276)
Q Consensus 268 ~v~l 271 (276)
+.+-
T Consensus 344 ~~lw 347 (599)
T 1w6s_A 344 ALVS 347 (599)
T ss_dssp CEEE
T ss_pred CEee
Confidence 8764
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00061 Score=70.32 Aligned_cols=169 Identities=6% Similarity=-0.051 Sum_probs=114.6
Q ss_pred eeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCC
Q 023864 91 YTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK 170 (276)
Q Consensus 91 ~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~ 170 (276)
+..+....+-|. .-+..++|+||++++.+++ .+..|+.||..+++......-... -..+++..+++.+..-.++
T Consensus 6 ~~~~~~~~~gh~--~~V~~lafspdg~~lAsgs--~Dg~I~lw~~~~~~~~~~~~~~~~--V~~l~fspg~~L~S~s~D~ 79 (902)
T 2oaj_A 6 FSLAETNKYGMS--SKPIAAAFDFTQNLLAIAT--VTGEVHIYGQQQVEVVIKLEDRSA--IKEMRFVKGIYLVVINAKD 79 (902)
T ss_dssp EEEEEEEEEECS--SCEEEEEEETTTTEEEEEE--TTSEEEEECSTTCEEEEECSSCCC--EEEEEEETTTEEEEEETTC
T ss_pred eeeccccccCCC--CCcEEEEECCCCCEEEEEe--CCCEEEEEeCCCcEEEEEcCCCCC--EEEEEEcCCCEEEEEECcC
Confidence 455666677773 3456999999998877665 667999999998877555332222 2355655555444444789
Q ss_pred EEEEEeCCCCcEEEEEecCCCCee--EEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEe--------eeCCEeeeeeee
Q 023864 171 TGFIYDQNNLNKLEEFTHQMKDGW--GLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIV--------RYKGREVRNLNE 240 (276)
Q Consensus 171 ~v~V~D~~tlk~i~~~~~~~~EGW--GLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V--------~~~g~pv~~lNE 240 (276)
++.+||.++.+.+.++..+ .+=+ .+.+||++|++...+..|.++|.++.+.. ...+ ...++ ...++.
T Consensus 80 ~v~lWd~~~~~~~~~~~~~-~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~-~~~i~~~~~~~~~~~~h-~~~V~s 156 (902)
T 2oaj_A 80 TVYVLSLYSQKVLTTVFVP-GKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS-SFKLDNLQKSSFFPAAR-LSPIVS 156 (902)
T ss_dssp EEEEEETTTCSEEEEEECS-SCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE-EEEECCHHHHHTCSSSC-CCCCCE
T ss_pred eEEEEECCCCcEEEEEcCC-CCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc-cceeccccccccccccC-CCCeEE
Confidence 9999999999999998754 2223 35689999999888899999999998764 2222 11122 124556
Q ss_pred eEEEC--CEEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 241 LEFIK--GEVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 241 LE~id--G~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
+.+.. +.+.+.-... ..| +-|.++++..
T Consensus 157 l~~sp~~~~~l~~g~~d-g~v-lWd~~~~~~~ 186 (902)
T 2oaj_A 157 IQWNPRDIGTVLISYEY-VTL-TYSLVENEIK 186 (902)
T ss_dssp EEEETTEEEEEEEECSS-CEE-EEETTTTEEE
T ss_pred EEEccCCCCEEEEEeCC-CcE-EEECCCCceE
Confidence 67774 3455555555 777 9999986543
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00051 Score=63.55 Aligned_cols=166 Identities=12% Similarity=0.038 Sum_probs=98.0
Q ss_pred EEEEEecCCCCCceEEEEecCCEEEEEcCCCCC-----------CeEEEEeCCCCcEE--------EEeecCCCceEEEE
Q 023864 95 VVNEFPHDPRAFTQGLLYAENDTLFESTGLYGR-----------SSVRRVALETGKVE--------AINQMEGSYFGEGL 155 (276)
Q Consensus 95 Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~-----------S~I~~iDl~tgkv~--------~~~~l~~~~FgEGi 155 (276)
++..+|.....+..+|.|++||.||.+.|..+. .+|.++|++. ++- .....+- ..+.||
T Consensus 125 l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG-~~p~~npf~~~~i~a~G~-rnp~Gl 202 (354)
T 3a9g_A 125 LIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEG-RPPADNPFPNSPIWSYGH-RNPQGI 202 (354)
T ss_dssp EEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTS-CCCTTSSSTTCCEEEECC-SCCCEE
T ss_pred EEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCC-CCCCCCCCCCCcEEEEcc-CCcceE
Confidence 456678544456789999999999999986432 4788888763 210 0111121 124477
Q ss_pred EEeC--CEEEEEEeeCCE---EEEEeCCC----------------CcEEEEEecC--CCCeeEEee------CCCEEEEE
Q 023864 156 TLLG--EKLFQVTWLQKT---GFIYDQNN----------------LNKLEEFTHQ--MKDGWGLAT------DGKVLFGS 206 (276)
Q Consensus 156 t~~g--~~LyqlTwk~~~---v~V~D~~t----------------lk~i~~~~~~--~~EGWGLT~------Dg~~L~vS 206 (276)
+++. ++||+.....+. +.++.+.. ..++..++.+ .+.|..+.. ....||++
T Consensus 203 a~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~ 282 (354)
T 3a9g_A 203 DWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIA 282 (354)
T ss_dssp EECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEE
T ss_pred EEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEE
Confidence 8874 799999887653 55554322 1222333111 223333310 23488888
Q ss_pred C-CCceEEEEcCCCC-cEEEEEEe--eeCCEeeeeeeeeEEE-CCEEEEEeCCCCC---------eEEEEeCCC
Q 023864 207 D-GSSMLYQIDPQTL-KVIRKDIV--RYKGREVRNLNELEFI-KGEVWANVWQVWP---------CIPYAYLQA 266 (276)
Q Consensus 207 D-GS~~L~viDp~t~-~vi~~I~V--~~~g~pv~~lNELE~i-dG~lyANvw~s~d---------~I~vIDp~T 266 (276)
| ...+|+.++++.. ++...-.+ +..++| -.+++. ||.||+..|.... .|.+|.++.
T Consensus 283 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp----~~v~~~pDG~lyv~~~~~~G~g~~~~~~g~i~ri~~~g 352 (354)
T 3a9g_A 283 CLRGSMLAAVNFGDNMEVRKISTFFKNVFGRL----RDVVIDDDGGILISTSNRDGRGSLRAGDDKILKIVSEQ 352 (354)
T ss_dssp ETTTTEEEEEEECGGGCEEEEEEECTTTSCCE----EEEEECTTSCEEEEECTTSSSSCCCTTCSCEEEEEETT
T ss_pred EcCCCEEEEEEECCCCcccceeeeccCCCCCe----eEEEECCCCcEEEEEeCCCCCcCCCCCCCEEEEEecCC
Confidence 8 6889999998864 44322222 212333 345554 7899999985313 899998864
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00026 Score=61.60 Aligned_cols=158 Identities=6% Similarity=0.001 Sum_probs=101.9
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCC--CcEEEEeecCCCceEEEEEEe-C--CEEEEEEeeCCEEEEEeCC
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALET--GKVEAINQMEGSYFGEGLTLL-G--EKLFQVTWLQKTGFIYDQN 178 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~t--gkv~~~~~l~~~~FgEGit~~-g--~~LyqlTwk~~~v~V~D~~ 178 (276)
..-+..+.|++|+.++.+++ .+..|++||+++ ++......-... --..+++. + +++....-.++.+.+||..
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 87 (379)
T 3jrp_A 11 NELIHDAVLDYYGKRLATCS--SDKTIKIFEVEGETHKLIDTLTGHEG-PVWRVDWAHPKFGTILASCSYDGKVLIWKEE 87 (379)
T ss_dssp CCCEEEEEECSSSSEEEEEE--TTSCEEEEEEETTEEEEEEEECCCSS-CEEEEEECCGGGCSEEEEEETTSCEEEEEEE
T ss_pred cccEEEEEEcCCCCEEEEEE--CCCcEEEEecCCCcceeeeEecCCCC-cEEEEEeCCCCCCCEEEEeccCCEEEEEEcC
Confidence 44457999999988777666 577899999984 444444322222 22456664 2 4555555668999999999
Q ss_pred CCc--EEEEEecCCCC--eeEEeeC--CCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE--------
Q 023864 179 NLN--KLEEFTHQMKD--GWGLATD--GKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-------- 244 (276)
Q Consensus 179 tlk--~i~~~~~~~~E--GWGLT~D--g~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-------- 244 (276)
+.+ .+..+...... ...+.++ ++.|+....+..|.++|..+.+....+....... .++-+.+.
T Consensus 88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~ 164 (379)
T 3jrp_A 88 NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI---GVNSASWAPATIEEDG 164 (379)
T ss_dssp TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTT---CEEEEEECCCC-----
T ss_pred CCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCC---ceEEEEEcCccccccc
Confidence 887 55555422122 2335677 8888888888899999999885544444433222 23445565
Q ss_pred ------CCEEEEEeCCCCCeEEEEeCCCCc
Q 023864 245 ------KGEVWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 245 ------dG~lyANvw~s~d~I~vIDp~T~~ 268 (276)
|+..++..-.+ ..|.+.|.++++
T Consensus 165 ~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~ 193 (379)
T 3jrp_A 165 EHNGTKESRKFVTGGAD-NLVKIWKYNSDA 193 (379)
T ss_dssp -----CTTCEEEEEETT-SCEEEEEEETTT
T ss_pred cccCCCCCCEEEEEeCC-CeEEEEEecCCC
Confidence 36666655566 788888887754
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00042 Score=69.28 Aligned_cols=156 Identities=15% Similarity=0.071 Sum_probs=107.7
Q ss_pred ceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCC----ceEEEEEEeCCEEEEEEee-----CCEEEEEeC
Q 023864 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGS----YFGEGLTLLGEKLFQVTWL-----QKTGFIYDQ 177 (276)
Q Consensus 107 TQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~----~FgEGit~~g~~LyqlTwk-----~~~v~V~D~ 177 (276)
..|+.+. ++++|..+. +..|..+|.+||+++-+.+++.. .....-.+.++++|+.+.. ++.++.+|+
T Consensus 110 ~~~~~~~-~~~v~v~~~---dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~ 185 (668)
T 1kv9_A 110 NRGVALW-GDKVYVGTL---DGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDA 185 (668)
T ss_dssp CCCCEEE-BTEEEEECT---TSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEET
T ss_pred ccceEEE-CCEEEEEcC---CCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEEC
Confidence 3577776 589998753 46899999999999888776421 1112234568999998764 589999999
Q ss_pred CCCcEEEEEecC--CCCe-------------------------------eEEeeCCCEEEEECCCc--------------
Q 023864 178 NNLNKLEEFTHQ--MKDG-------------------------------WGLATDGKVLFGSDGSS-------------- 210 (276)
Q Consensus 178 ~tlk~i~~~~~~--~~EG-------------------------------WGLT~Dg~~L~vSDGS~-------------- 210 (276)
+|.+++-++... .+++ ..+.++++.+|+..+..
T Consensus 186 ~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd 265 (668)
T 1kv9_A 186 DTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGD 265 (668)
T ss_dssp TTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCC
T ss_pred CCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCC
Confidence 999999998742 1111 12445678899865432
Q ss_pred -----eEEEEcCCCCcEEEEEEeeeCC-------EeeeeeeeeEEECCE----EEEEeCCCCCeEEEEeCCCCcEE
Q 023864 211 -----MLYQIDPQTLKVIRKDIVRYKG-------REVRNLNELEFIKGE----VWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 211 -----~L~viDp~t~~vi~~I~V~~~g-------~pv~~lNELE~idG~----lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
.|+-+|++|++++=+.++.... .|. .+.+++ +||+ |++.. .. ..+.++|.+||+.+
T Consensus 266 ~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~-~~~d~~-~~G~~~~~v~~~~-~~-G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 266 NLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQI-TLAELN-IDGKPRKVLMQAP-KN-GFFYVLDRTNGKLI 337 (668)
T ss_dssp CTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCE-EEEEEE-ETTEEEEEEEECC-TT-SEEEEEETTTCCEE
T ss_pred ceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCc-EEEEec-cCCcEEEEEEEEC-CC-CEEEEEECCCCCEe
Confidence 5999999999998877764211 111 233444 3675 44443 45 79999999998876
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00016 Score=62.74 Aligned_cols=153 Identities=9% Similarity=0.016 Sum_probs=98.0
Q ss_pred EEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEEEEEeeCCEEE
Q 023864 95 VVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGF 173 (276)
Q Consensus 95 Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~LyqlTwk~~~v~ 173 (276)
++.+++.+ ......+.++++|.||.++ ..|..+| .+|+...+...+.. ...++..++ +.||+.|. ++.++
T Consensus 168 ~~~~~~~~-~~~~~~~~~d~~g~l~v~t-----~~l~~~d-~~g~~~~~~~~~~~-~~~~~~~~~~g~l~v~t~-~~gl~ 238 (330)
T 3hxj_A 168 EKWRFKTN-DAITSAASIGKDGTIYFGS-----DKVYAIN-PDGTEKWNFYAGYW-TVTRPAISEDGTIYVTSL-DGHLY 238 (330)
T ss_dssp EEEEEECS-SCCCSCCEECTTCCEEEES-----SSEEEEC-TTSCEEEEECCSSC-CCSCCEECTTSCEEEEET-TTEEE
T ss_pred EeEEEecC-CCceeeeEEcCCCEEEEEe-----CEEEEEC-CCCcEEEEEccCCc-ceeceEECCCCeEEEEcC-CCeEE
Confidence 44455543 3344577887789999876 6799999 78887777665532 123556665 49999986 56788
Q ss_pred EEeCCCCcEEEEEecCCCCeeEEeeC-CCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEE-ECCEEEEE
Q 023864 174 IYDQNNLNKLEEFTHQMKDGWGLATD-GKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEF-IKGEVWAN 251 (276)
Q Consensus 174 V~D~~tlk~i~~~~~~~~EGWGLT~D-g~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~-idG~lyAN 251 (276)
.+|+ +.+.+.+++.+.+--..+..| +..||++.....|+.+|+ +++.+....... . ..+-+.. .+|+||+.
T Consensus 239 ~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~~~~~~~--~---~~~~~~~d~~g~l~~g 311 (330)
T 3hxj_A 239 AINP-DGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-DGTEKWNFETGS--W---IIATPVIDENGTIYFG 311 (330)
T ss_dssp EECT-TSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT-TSCEEEEEECSS--C---CCSCCEECTTCCEEEE
T ss_pred EECC-CCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC-CCcEEEEEEcCC--c---cccceEEcCCCEEEEE
Confidence 8885 556666776441111123334 668898877778999997 687776665532 1 2233334 47899986
Q ss_pred eCCCCCeEEEEeCCC
Q 023864 252 VWQVWPCIPYAYLQA 266 (276)
Q Consensus 252 vw~s~d~I~vIDp~T 266 (276)
-- +-++.++|..
T Consensus 312 t~---~G~~~~~~~~ 323 (330)
T 3hxj_A 312 TR---NGKFYALFNL 323 (330)
T ss_dssp CT---TSCEEEEEC-
T ss_pred cC---CCeEEEEecc
Confidence 53 4456666554
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00027 Score=64.06 Aligned_cols=161 Identities=13% Similarity=0.110 Sum_probs=110.6
Q ss_pred CCCCceEEEEec-CCEEEEEcCCCCCCeEEEEeCCC-CcEEEEeecC-CCceEEEEEEeC-CEEEEEEeeCCEEEEEeCC
Q 023864 103 PRAFTQGLLYAE-NDTLFESTGLYGRSSVRRVALET-GKVEAINQME-GSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQN 178 (276)
Q Consensus 103 ~~aFTQGL~~~~-dg~LyeStG~yg~S~I~~iDl~t-gkv~~~~~l~-~~~FgEGit~~g-~~LyqlTwk~~~v~V~D~~ 178 (276)
.......+.+.+ ++.++.+++ .+..|+.||+.. ++.+....-- ... ..+++.. ++.++..-.++++.+||..
T Consensus 204 h~~~v~~~~~~~~~~~~l~sgs--~D~~v~~wd~~~~~~~~~~~~~h~~~v--~~v~~~p~~~~l~s~s~D~~i~lwd~~ 279 (380)
T 3iz6_a 204 HTADVLSLSINSLNANMFISGS--CDTTVRLWDLRITSRAVRTYHGHEGDI--NSVKFFPDGQRFGTGSDDGTCRLFDMR 279 (380)
T ss_dssp CCSCEEEEEECSSSCCEEEEEE--TTSCEEEEETTTTCCCCEEECCCSSCC--CEEEECTTSSEEEEECSSSCEEEEETT
T ss_pred CccCeEEEEeecCCCCEEEEEE--CCCeEEEEECCCCCcceEEECCcCCCe--EEEEEecCCCeEEEEcCCCeEEEEECC
Confidence 345566888865 677888777 788999999974 4443333211 122 2455553 4566666788999999999
Q ss_pred CCcEEEEEecCC---------CCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEE
Q 023864 179 NLNKLEEFTHQM---------KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEV 248 (276)
Q Consensus 179 tlk~i~~~~~~~---------~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~l 248 (276)
+.+.+..+.... -....+++||+.|+....+..|+++|..+.+.+..+.....++. ..++.|.+. ||..
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~-~~v~~l~~s~dg~~ 358 (380)
T 3iz6_a 280 TGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHE-GRISCLGLSSDGSA 358 (380)
T ss_dssp TTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCC-CCCCEEEECSSSSE
T ss_pred CCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCC-CceEEEEECCCCCE
Confidence 999988885420 12456789999999988888999999999988776644323321 245666665 6666
Q ss_pred EEEeCCCCCeEEEEeCCCCcE
Q 023864 249 WANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 249 yANvw~s~d~I~vIDp~T~~v 269 (276)
.|..-.+ ..|.+-|....+.
T Consensus 359 l~sgs~D-~~i~iW~~~~~~~ 378 (380)
T 3iz6_a 359 LCTGSWD-KNLKIWAFSGHRK 378 (380)
T ss_dssp EEEECTT-SCEEEEECCSSSS
T ss_pred EEEeeCC-CCEEEEecCCCcc
Confidence 6666556 7888888877543
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00061 Score=68.47 Aligned_cols=158 Identities=10% Similarity=0.025 Sum_probs=106.1
Q ss_pred ceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecC-CC----ceEEEEEEeCCEEEEEEee-----CCEEEEEe
Q 023864 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME-GS----YFGEGLTLLGEKLFQVTWL-----QKTGFIYD 176 (276)
Q Consensus 107 TQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~-~~----~FgEGit~~g~~LyqlTwk-----~~~v~V~D 176 (276)
..|+.+. ++++|..+. +..|..+|.+||+++=+.... .. .....-++.++++|+.+.. ++.++.+|
T Consensus 114 ~~~~~~~-~g~v~v~~~---dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D 189 (689)
T 1yiq_A 114 NRGVAVW-KGKVYVGVL---DGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYD 189 (689)
T ss_dssp CCCCEEE-TTEEEEECT---TSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEE
T ss_pred CCccEEE-CCEEEEEcc---CCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEE
Confidence 3577776 589998653 578999999999998777664 11 1111335568999997763 68999999
Q ss_pred CCCCcEEEEEecC--CCC-------------------------------eeEEeeCCCEEEEECCCc-------------
Q 023864 177 QNNLNKLEEFTHQ--MKD-------------------------------GWGLATDGKVLFGSDGSS------------- 210 (276)
Q Consensus 177 ~~tlk~i~~~~~~--~~E-------------------------------GWGLT~Dg~~L~vSDGS~------------- 210 (276)
++|.+++-++... .+. ...+.++++.+|+..+..
T Consensus 190 ~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~g 269 (689)
T 1yiq_A 190 AETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKG 269 (689)
T ss_dssp TTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCS
T ss_pred CCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCC
Confidence 9999999888641 011 123455778999976543
Q ss_pred ------eEEEEcCCCCcEEEEEEeee-C-----CEeeeeeeeeEEECCE---EEEEeCCCCCeEEEEeCCCCcEE
Q 023864 211 ------MLYQIDPQTLKVIRKDIVRY-K-----GREVRNLNELEFIKGE---VWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 211 ------~L~viDp~t~~vi~~I~V~~-~-----g~pv~~lNELE~idG~---lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
.|+-+|++|++++=+..... + ......+-+++ ++|+ +.+..=.. ..+.++|++||+.+
T Consensus 270 d~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~-~~G~~~~~v~~~~~~-G~l~~lD~~tG~~l 342 (689)
T 1yiq_A 270 DNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELP-IDGKPRKVLMQAPKN-GFFYVIDRATGELL 342 (689)
T ss_dssp CCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEE-ETTEEEEEEEECCTT-SEEEEEETTTCCEE
T ss_pred CceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeec-cCCcEEEEEEEECCC-CeEEEEECCCCCEe
Confidence 49999999999987766532 1 11001222333 2664 33333345 79999999998876
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=97.97 E-value=8.8e-05 Score=72.38 Aligned_cols=154 Identities=11% Similarity=0.011 Sum_probs=94.0
Q ss_pred ceEEEEecCCEEEEEcCCCCCCeEEEEeCCCC---cEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEE
Q 023864 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETG---KVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKL 183 (276)
Q Consensus 107 TQGL~~~~dg~LyeStG~yg~S~I~~iDl~tg---kv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i 183 (276)
...+.|+|||+.+..+.. ..|..||++++ ++......+.....-.+..+|++|+... ++.++++|.++.+..
T Consensus 111 v~~~~~SpDg~~l~~~~~---~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~--~~~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPLG---GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR--GRNLWVIDLASGRQM 185 (741)
T ss_dssp SCCCEECTTSSEEEEEET---TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE--TTEEEEEETTTTEEE
T ss_pred cceeEECCCCCEEEEEeC---CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe--CCcEEEEecCCCCEE
Confidence 357899999863333331 79999999998 6533222223333333333455665554 679999999987665
Q ss_pred EEEecCC------------------CCeeEEeeCCCEEEEE--CCC-------------------------------ceE
Q 023864 184 EEFTHQM------------------KDGWGLATDGKVLFGS--DGS-------------------------------SML 212 (276)
Q Consensus 184 ~~~~~~~------------------~EGWGLT~Dg~~L~vS--DGS-------------------------------~~L 212 (276)
....... ..+..+++||++|+.+ |++ .+|
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 4322211 1456789999988774 231 289
Q ss_pred EEEcCCC-CcEEEEEEee-eCCEeeeeeeeeEEECC-EEEEEeC----CCCCeEEEEeCCCCcEE
Q 023864 213 YQIDPQT-LKVIRKDIVR-YKGREVRNLNELEFIKG-EVWANVW----QVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 213 ~viDp~t-~~vi~~I~V~-~~g~pv~~lNELE~idG-~lyANvw----~s~d~I~vIDp~T~~v~ 270 (276)
+++|.++ .+... +... .... .++.+.|.|| +|++... .. ..|.++|+++++..
T Consensus 266 ~~~d~~~~~~~~~-~~~~~~~~~---~~~~~~~pDg~~l~~~~~~~~~~~-~~i~~~d~~~g~~~ 325 (741)
T 2ecf_A 266 GVISPAEQAQTQW-IDLGKEQDI---YLARVNWRDPQHLSFQRQSRDQKK-LDLVEVTLASNQQR 325 (741)
T ss_dssp EEECSSTTCCCEE-ECCCSCSSE---EEEEEEEEETTEEEEEEEETTSSE-EEEEEEETTTCCEE
T ss_pred EEEECCCCCceEE-ecCCCCcce---EEEEEEeCCCCEEEEEEecccCCe-EEEEEEECCCCceE
Confidence 9999998 77543 3322 1122 3445556555 4665443 23 57999999998754
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.97 E-value=3.1e-05 Score=68.96 Aligned_cols=168 Identities=8% Similarity=0.057 Sum_probs=106.7
Q ss_pred EEEEEecCCCCCceEEEEecC-CEEEEEcCCCCCCeEEEEeCCCCc------EEEEe-ec-CCCceEEEEEEeC--CEEE
Q 023864 95 VVNEFPHDPRAFTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGK------VEAIN-QM-EGSYFGEGLTLLG--EKLF 163 (276)
Q Consensus 95 Vv~~~Phd~~aFTQGL~~~~d-g~LyeStG~yg~S~I~~iDl~tgk------v~~~~-~l-~~~~FgEGit~~g--~~Ly 163 (276)
.+.++.. ...-...+.|+++ +.++.+++ .+..|+.||+++++ ..... .+ +..--...+++.. +.++
T Consensus 105 ~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 181 (416)
T 2pm9_A 105 SMARFSN-HSSSVKTVKFNAKQDNVLASGG--NNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVF 181 (416)
T ss_dssp EEEECCC-SSSCCCEEEECSSSTTBEEEEC--SSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEE
T ss_pred chhhccC-CccceEEEEEcCCCCCEEEEEc--CCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEE
Confidence 4444432 2344569999998 67777666 67889999999986 22221 11 1111123555553 5677
Q ss_pred EEEeeCCEEEEEeCCCCcEEEEEecCC------C--CeeEEeeCCCE-EEEECCCc---eEEEEcCCCCc-EEEEEEeee
Q 023864 164 QVTWLQKTGFIYDQNNLNKLEEFTHQM------K--DGWGLATDGKV-LFGSDGSS---MLYQIDPQTLK-VIRKDIVRY 230 (276)
Q Consensus 164 qlTwk~~~v~V~D~~tlk~i~~~~~~~------~--EGWGLT~Dg~~-L~vSDGS~---~L~viDp~t~~-vi~~I~V~~ 230 (276)
+..-.++.+.+||..+.+.+.++.... . ....+++||.. |+...... .|.++|..+.+ .+..+..
T Consensus 182 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~-- 259 (416)
T 2pm9_A 182 ASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQ-- 259 (416)
T ss_dssp EEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCS--
T ss_pred EEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeec--
Confidence 777889999999999999999887531 1 22346678754 44433344 99999999863 3333220
Q ss_pred CCEeeeeeeeeEEE--CCEEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 231 KGREVRNLNELEFI--KGEVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 231 ~g~pv~~lNELE~i--dG~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
++. ..++.+.+. +|.+++..-.+ ..|.+.|.++++.+
T Consensus 260 -~~~-~~v~~~~~s~~~~~~l~s~~~d-g~v~~wd~~~~~~~ 298 (416)
T 2pm9_A 260 -GHQ-KGILSLDWCHQDEHLLLSSGRD-NTVLLWNPESAEQL 298 (416)
T ss_dssp -CCS-SCEEEEEECSSCSSCEEEEESS-SEEEEECSSSCCEE
T ss_pred -Ccc-CceeEEEeCCCCCCeEEEEeCC-CCEEEeeCCCCccc
Confidence 111 245566675 56666666566 89999999997654
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00013 Score=68.83 Aligned_cols=155 Identities=13% Similarity=0.199 Sum_probs=101.8
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCEEEEEcCCC---------------CCCeEEEEeCCCCcEEEEeecCCCceEEEEE
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLY---------------GRSSVRRVALETGKVEAINQMEGSYFGEGLT 156 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~y---------------g~S~I~~iDl~tgkv~~~~~l~~~~FgEGit 156 (276)
..+.+.++.+.+-.+...+.++++|.+|.++..| ....|.++|+.+-++ -++.-.|+-||+
T Consensus 152 ~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~----~~~~l~~pNGia 227 (355)
T 3sre_A 152 SLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRV----VAEGFDFANGIN 227 (355)
T ss_dssp EEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEE----EEEEESSEEEEE
T ss_pred EEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEE----eecCCcccCcce
Confidence 3567888888777778999999999999987654 235788898842222 133345788999
Q ss_pred Ee--CCEEEEEEeeCCEEEEEeCC---CCcEEEEEecC-CCCeeEEeeCCCEEEEEC--CCceEEEEcCCC--CcEEEEE
Q 023864 157 LL--GEKLFQVTWLQKTGFIYDQN---NLNKLEEFTHQ-MKDGWGLATDGKVLFGSD--GSSMLYQIDPQT--LKVIRKD 226 (276)
Q Consensus 157 ~~--g~~LyqlTwk~~~v~V~D~~---tlk~i~~~~~~-~~EGWGLT~Dg~~L~vSD--GS~~L~viDp~t--~~vi~~I 226 (276)
+. ++.||+..-..+++.+||.+ ++...+.|..+ .|+|..+..+...||++. +..+|..+||+. .+.+.+|
T Consensus 228 ~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI 307 (355)
T 3sre_A 228 ISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRI 307 (355)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEE
T ss_pred ECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEecCCceEEEEECCCCCCCCEEEEE
Confidence 86 46899999999999999964 34445566544 345555555324688855 445666667763 4445555
Q ss_pred Ee------------eeCCEeeeeeeeeEEECCEEEE
Q 023864 227 IV------------RYKGREVRNLNELEFIKGEVWA 250 (276)
Q Consensus 227 ~V------------~~~g~pv~~lNELE~idG~lyA 250 (276)
.. .++|+.+....+....+|+||.
T Consensus 308 ~~~~~~~~~v~~v~~ddG~~l~~~T~a~~~~g~L~i 343 (355)
T 3sre_A 308 QDILSEEPKVTVVYAENGTVLQGSTVAAVYKGKLLI 343 (355)
T ss_dssp ECTTSSSCEEEEEEEECSSSCCSEEEEEEETTEEEE
T ss_pred EccCCCCcEEEEEEEcCCCEEEeeEEEEEECCEEEE
Confidence 42 2355555555555555666664
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=0.0007 Score=69.99 Aligned_cols=157 Identities=10% Similarity=0.032 Sum_probs=108.0
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEEEEEeeCCEEEEEeCCCCcE
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNK 182 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~LyqlTwk~~~v~V~D~~tlk~ 182 (276)
..-+.++.|++||+++.++| .+..|+.||..+++.+....-... --..+++.. +++.+..-.++.+.+||..+.+.
T Consensus 615 ~~~v~~~~~s~~~~~l~s~~--~d~~i~vw~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~ 691 (1249)
T 3sfz_A 615 TDAVYHACFSQDGQRIASCG--ADKTLQVFKAETGEKLLDIKAHED-EVLCCAFSSDDSYIATCSADKKVKIWDSATGKL 691 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEE--TTSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred cccEEEEEECCCCCEEEEEe--CCCeEEEEECCCCCEEEEeccCCC-CEEEEEEecCCCEEEEEeCCCeEEEEECCCCce
Confidence 34457999999998887777 677899999999998777653322 224556653 34444555789999999999999
Q ss_pred EEEEecCCCCeeE--EeeCCC--EEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCCCCC
Q 023864 183 LEEFTHQMKDGWG--LATDGK--VLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQVWP 257 (276)
Q Consensus 183 i~~~~~~~~EGWG--LT~Dg~--~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~s~d 257 (276)
+.++......=+. ++++++ .++....+..|.++|..+.+.+.++.-.. ..++-+.+. +|...|..-.+ .
T Consensus 692 ~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~-----~~v~~~~~sp~~~~l~s~s~d-g 765 (1249)
T 3sfz_A 692 VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT-----NSVNHCRFSPDDELLASCSAD-G 765 (1249)
T ss_dssp EEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCS-----SCEEEEEECSSTTEEEEEESS-S
T ss_pred EEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCC-----CCEEEEEEecCCCEEEEEECC-C
Confidence 9999743222233 455433 44444457789999999998876654322 234455555 56666666566 8
Q ss_pred eEEEEeCCCCcE
Q 023864 258 CIPYAYLQAFGS 269 (276)
Q Consensus 258 ~I~vIDp~T~~v 269 (276)
.|.+.|..+++.
T Consensus 766 ~v~vwd~~~~~~ 777 (1249)
T 3sfz_A 766 TLRLWDVRSANE 777 (1249)
T ss_dssp EEEEEEGGGTEE
T ss_pred eEEEEeCCCCcc
Confidence 899999988654
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=97.96 E-value=0.0019 Score=55.39 Aligned_cols=155 Identities=9% Similarity=-0.035 Sum_probs=102.9
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--C-CEEEEEEeeCCEEEEEeCCCC
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--G-EKLFQVTWLQKTGFIYDQNNL 180 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g-~~LyqlTwk~~~v~V~D~~tl 180 (276)
........+.+++.++.+++ .+..++.||............+..-....+++. + +.+++..-.++.+.++|..+.
T Consensus 128 ~~~~~~~~~~~~~~~l~s~s--~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~ 205 (340)
T 4aow_A 128 TKDVLSVAFSSDNRQIVSGS--RDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC 205 (340)
T ss_dssp SSCEEEEEECTTSSCEEEEE--TTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT
T ss_pred CCceeEEEEeecCccceeec--CCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC
Confidence 44446777787777666666 677899999987755433333322223344443 2 355666667899999999999
Q ss_pred cEEEEEecCCC--CeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECC-EEEEEeCCCCC
Q 023864 181 NKLEEFTHQMK--DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKG-EVWANVWQVWP 257 (276)
Q Consensus 181 k~i~~~~~~~~--EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG-~lyANvw~s~d 257 (276)
+.+.++.-... ....+++||+.|+....+..|.++|..+.+.+..+.... .++.+.+..+ ++.+.. .. +
T Consensus 206 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~------~v~~~~~~~~~~~~~~~-~d-~ 277 (340)
T 4aow_A 206 KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD------IINALCFSPNRYWLCAA-TG-P 277 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSS------CEEEEEECSSSSEEEEE-ET-T
T ss_pred ceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCc------eEEeeecCCCCceeecc-CC-C
Confidence 99888853211 233467899998887778899999999999887776543 3445555544 444333 45 7
Q ss_pred eEEEEeCCCCc
Q 023864 258 CIPYAYLQAFG 268 (276)
Q Consensus 258 ~I~vIDp~T~~ 268 (276)
.|.+.|.+++.
T Consensus 278 ~i~iwd~~~~~ 288 (340)
T 4aow_A 278 SIKIWDLEGKI 288 (340)
T ss_dssp EEEEEETTTTE
T ss_pred EEEEEECCCCe
Confidence 88888887743
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00039 Score=61.63 Aligned_cols=149 Identities=14% Similarity=0.095 Sum_probs=95.1
Q ss_pred EEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCC-ceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEe
Q 023864 110 LLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGS-YFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFT 187 (276)
Q Consensus 110 L~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~-~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~ 187 (276)
..|+|||+ |+.++..-|...|..+|+++|+.......+.. .++.-+..++++|+... .++.++++|.++.+....+.
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~-~~~~l~~~d~~~g~~~~~~~ 119 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVK-DGRNLMRVDLATLEENVVYQ 119 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEE-TTTEEEEEETTTCCEEEEEE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEe-CCCeEEEEECCCCcceeeee
Confidence 67899986 44333323667899999999987665543332 22333455567777766 35799999999998776665
Q ss_pred cCCCCe------eEEeeCCCEEEEE----------------------CCCceEEEEcCCCCcEEEEEEeeeCCEeeeeee
Q 023864 188 HQMKDG------WGLATDGKVLFGS----------------------DGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLN 239 (276)
Q Consensus 188 ~~~~EG------WGLT~Dg~~L~vS----------------------DGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lN 239 (276)
.+ ++ |.+.+||+.++.. +....|+++|+++.+......-. ..++
T Consensus 120 ~~--~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~------~~~~ 191 (388)
T 3pe7_A 120 VP--AEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQEN------QWLG 191 (388)
T ss_dssp CC--TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEES------SCEE
T ss_pred ch--hhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCC------cccc
Confidence 44 33 3457888887632 23478999999998764332211 1344
Q ss_pred eeEEE--CCE--EEEEeCC----CCCeEEEEeCCCCc
Q 023864 240 ELEFI--KGE--VWANVWQ----VWPCIPYAYLQAFG 268 (276)
Q Consensus 240 ELE~i--dG~--lyANvw~----s~d~I~vIDp~T~~ 268 (276)
.+.+. ||+ +|+.... . ..|.++|+++++
T Consensus 192 ~~~~sp~dg~~l~~~~~~~~~~~~-~~l~~~d~~~~~ 227 (388)
T 3pe7_A 192 HPIYRPYDDSTVAFCHEGPHDLVD-ARMWLINEDGTN 227 (388)
T ss_dssp EEEEETTEEEEEEEEECSCTTTSS-CSEEEEETTSCC
T ss_pred ccEECCCCCCEEEEEEecCCCCCc-ceEEEEeCCCCc
Confidence 55565 354 3455432 3 589999987754
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00046 Score=66.93 Aligned_cols=158 Identities=13% Similarity=0.037 Sum_probs=108.8
Q ss_pred CCCceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEEEEEeeCCEEEEEeCCCCc
Q 023864 104 RAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLN 181 (276)
Q Consensus 104 ~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~LyqlTwk~~~v~V~D~~tlk 181 (276)
...+..+.|+|++. ++.+++ .+..|+.||.++++...... +..-.-..+++.. ++++...-.++++.+||..+.+
T Consensus 147 ~~~v~~v~f~p~~~~~l~s~s--~D~~v~lwd~~~~~~~~~l~-~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~ 223 (611)
T 1nr0_A 147 ARAMNSVDFKPSRPFRIISGS--DDNTVAIFEGPPFKFKSTFG-EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT 223 (611)
T ss_dssp SSCEEEEEECSSSSCEEEEEE--TTSCEEEEETTTBEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred CCCceEEEECCCCCeEEEEEe--CCCeEEEEECCCCeEeeeec-cccCceEEEEECCCCCEEEEEECCCcEEEEECCCCc
Confidence 44567899999875 566666 78899999999998766543 2222344666653 4566666788999999999999
Q ss_pred EEEEEec------CC-C--CeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEe
Q 023864 182 KLEEFTH------QM-K--DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANV 252 (276)
Q Consensus 182 ~i~~~~~------~~-~--EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANv 252 (276)
.+.++.. .. . .+..+++||+.|.....+.+|.++|.++++.++++..+..- -.....+.+ ++...+..
T Consensus 224 ~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~l~s~ 300 (611)
T 1nr0_A 224 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI--EDQQLGIIW-TKQALVSI 300 (611)
T ss_dssp EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSG--GGCEEEEEE-CSSCEEEE
T ss_pred EeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCc--cceeEEEEE-cCCEEEEE
Confidence 9888732 11 1 23446789999888767889999999999999888764210 001112223 55555556
Q ss_pred CCCCCeEEEEeCCCCc
Q 023864 253 WQVWPCIPYAYLQAFG 268 (276)
Q Consensus 253 w~s~d~I~vIDp~T~~ 268 (276)
... ..|.+.|+++++
T Consensus 301 s~d-~~i~~~~~~~~~ 315 (611)
T 1nr0_A 301 SAN-GFINFVNPELGS 315 (611)
T ss_dssp ETT-CCEEEEETTTTE
T ss_pred eCC-CcEEEEeCCCCC
Confidence 566 788888887754
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00049 Score=69.15 Aligned_cols=76 Identities=13% Similarity=0.120 Sum_probs=61.8
Q ss_pred CEEEEEeCCCCcEEEEEecCCCCee--EEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeC--CEeeeeeeeeEE-E
Q 023864 170 KTGFIYDQNNLNKLEEFTHQMKDGW--GLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYK--GREVRNLNELEF-I 244 (276)
Q Consensus 170 ~~v~V~D~~tlk~i~~~~~~~~EGW--GLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~--g~pv~~lNELE~-i 244 (276)
+.+..+|++|.|++-+++.+. ..| .++..|..+|+...+..|+.+|.+|++++-+..+... +.|+. | .
T Consensus 455 g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~t------y~~ 527 (689)
T 1yiq_A 455 GKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVT------YSV 527 (689)
T ss_dssp EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE------EEE
T ss_pred eeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceE------EEE
Confidence 678899999999999998762 233 4888999999988899999999999999988887643 34544 4 6
Q ss_pred CCEEEEEe
Q 023864 245 KGEVWANV 252 (276)
Q Consensus 245 dG~lyANv 252 (276)
||+.|+.+
T Consensus 528 ~G~qyv~~ 535 (689)
T 1yiq_A 528 DGEQYVTF 535 (689)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEE
Confidence 99999776
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00036 Score=57.99 Aligned_cols=155 Identities=10% Similarity=0.013 Sum_probs=90.6
Q ss_pred CCceEEEEecCCEEEEEcC--CCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeCCEEEE--EeCC
Q 023864 105 AFTQGLLYAENDTLFESTG--LYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFI--YDQN 178 (276)
Q Consensus 105 aFTQGL~~~~dg~LyeStG--~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~~~v~V--~D~~ 178 (276)
.....+.|++||+.+..++ .-+...|..+|+++++. ..+..... ...+++. ++.|+.....++.+.+ +|..
T Consensus 85 ~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~--~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~ 161 (297)
T 2ojh_A 85 ICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMTKNLP--SYWHGWSPDGKSFTYCGIRDQVFDIYSMDID 161 (297)
T ss_dssp CBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECCSSSS--EEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred ccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEeecCCC--ccceEECCCCCEEEEEECCCCceEEEEEECC
Confidence 4456899999986444333 22567899999988874 33333333 3344554 5677777777785555 4566
Q ss_pred CCcEEEEEecC-CCCeeEEeeCCCEEEEE---CCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CC-EEEEEe
Q 023864 179 NLNKLEEFTHQ-MKDGWGLATDGKVLFGS---DGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVWANV 252 (276)
Q Consensus 179 tlk~i~~~~~~-~~EGWGLT~Dg~~L~vS---DGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG-~lyANv 252 (276)
+.+...-...+ ......+++||+.|+++ |+...|+.+|+.+.++. .+ ..... ....+.+. || +|++..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~-~~--~~~~~---~~~~~~~s~dg~~l~~~~ 235 (297)
T 2ojh_A 162 SGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVE-RI--TDSAY---GDWFPHPSPSGDKVVFVS 235 (297)
T ss_dssp TCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEE-EC--CCCSE---EEEEEEECTTSSEEEEEE
T ss_pred CCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcE-EE--ecCCc---ccCCeEECCCCCEEEEEE
Confidence 65543222221 12334567899988764 46788888887765542 22 22122 23344554 55 454333
Q ss_pred C----------CCCCeEEEEeCCCCcE
Q 023864 253 W----------QVWPCIPYAYLQAFGS 269 (276)
Q Consensus 253 w----------~s~d~I~vIDp~T~~v 269 (276)
. .. ..|.++|.++++.
T Consensus 236 ~~~~~~~~~~~~~-~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 236 YDADVFDHPRDLD-VRVQLMDMDGGNV 261 (297)
T ss_dssp EETTCCSCCSSEE-EEEEEEETTSCSC
T ss_pred cCCCCCcccccCc-eEEEEEecCCCCc
Confidence 2 22 4699999998764
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0015 Score=59.53 Aligned_cols=170 Identities=11% Similarity=0.054 Sum_probs=112.9
Q ss_pred ceeeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCC-ceEEEEEEeC-CEEEEEE
Q 023864 89 SIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGS-YFGEGLTLLG-EKLFQVT 166 (276)
Q Consensus 89 ~~~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~-~FgEGit~~g-~~LyqlT 166 (276)
+...++|++.--.-...|..=|.+++++.|- .|+ ++.|+.||.+||++.....+..+ ..-..+++.. +++...-
T Consensus 90 ~~~p~~~l~ap~~~~d~y~~~l~wS~~n~lA--vgl--d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasg 165 (420)
T 4gga_A 90 PSLPDRILDAPEIRNDYYLNLVDWSSGNVLA--VAL--DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVG 165 (420)
T ss_dssp CSSCSEEEECTTCCCCTTCBCEEECTTSEEE--EEE--TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEE
T ss_pred CCCCceEEECCCCcccccceeEEECCCCEEE--EEe--CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEE
Confidence 3345667654222234456778898766554 453 57999999999999888777643 2345666653 4555556
Q ss_pred eeCCEEEEEeCCCCcEEEEEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcE-EEEEEeeeCCEeeeeeeeeEEE-
Q 023864 167 WLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKV-IRKDIVRYKGREVRNLNELEFI- 244 (276)
Q Consensus 167 wk~~~v~V~D~~tlk~i~~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~v-i~~I~V~~~g~pv~~lNELE~i- 244 (276)
-.++.+.+||.++.+.+.++.-....-..++.|++.|.....+..+.++|..+... +.++.-.. . ...-+.+.
T Consensus 166 s~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~--~---~~~~~~~~~ 240 (420)
T 4gga_A 166 TSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHS--Q---EVCGLRWAP 240 (420)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCS--S---CEEEEEECT
T ss_pred ECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccc--c---ceeeeeecC
Confidence 67899999999999999988643345566899999888877888999999776443 33333221 1 12223333
Q ss_pred CCEEEEEeCCCCCeEEEEeCCCCc
Q 023864 245 KGEVWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 245 dG~lyANvw~s~d~I~vIDp~T~~ 268 (276)
+|...+....+ +.|.+.|..+++
T Consensus 241 ~g~~l~s~~~D-~~v~i~~~~~~~ 263 (420)
T 4gga_A 241 DGRHLASGGND-NLVNVWPSAPGE 263 (420)
T ss_dssp TSSEEEEEETT-SCEEEEESSCCS
T ss_pred CCCeeeeeecc-ccceEEeecccc
Confidence 55556666566 788888877654
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0017 Score=57.61 Aligned_cols=156 Identities=7% Similarity=-0.014 Sum_probs=101.5
Q ss_pred CCCceEEEEec-CCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC-CceEEEEEEeC-CEEEEEEeeCCEEEEEeCCCC
Q 023864 104 RAFTQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQMEG-SYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNL 180 (276)
Q Consensus 104 ~aFTQGL~~~~-dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~-~~FgEGit~~g-~~LyqlTwk~~~v~V~D~~tl 180 (276)
..-...+.|++ ++.++.+++ .+..|+.||+++..+........ ......+++.. ++.+...-.++.+.+||. +.
T Consensus 118 ~~~v~~~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~ 194 (383)
T 3ei3_B 118 GDAITGMKFNQFNTNQLFVSS--IRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DG 194 (383)
T ss_dssp TCBEEEEEEETTEEEEEEEEE--TTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TS
T ss_pred CCceeEEEeCCCCCCEEEEEe--CCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CC
Confidence 45567999999 567766666 67899999999754433222221 12234556553 455556667899999998 56
Q ss_pred cEEEEEecCCC--CeeEEeeCCC-EEEEECCCceEEEEcCCC----CcEEEEEEeeeCCEeeeeeeeeEEE--CCEEEEE
Q 023864 181 NKLEEFTHQMK--DGWGLATDGK-VLFGSDGSSMLYQIDPQT----LKVIRKDIVRYKGREVRNLNELEFI--KGEVWAN 251 (276)
Q Consensus 181 k~i~~~~~~~~--EGWGLT~Dg~-~L~vSDGS~~L~viDp~t----~~vi~~I~V~~~g~pv~~lNELE~i--dG~lyAN 251 (276)
+.+.++..... ....++++++ .|+....+..|.++|..+ .+.+..+.- . ..++.+.+. +|...+.
T Consensus 195 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---~---~~v~~~~~s~~~~~~l~~ 268 (383)
T 3ei3_B 195 HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPH---E---KPVNAAYFNPTDSTKLLT 268 (383)
T ss_dssp CEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEEC---S---SCEEEEEECTTTSCEEEE
T ss_pred CEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecC---C---CceEEEEEcCCCCCEEEE
Confidence 77777763212 2334678888 555555678999999988 555555531 1 245556675 5665555
Q ss_pred eCCCCCeEEEEeCCCCcE
Q 023864 252 VWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 252 vw~s~d~I~vIDp~T~~v 269 (276)
.-.+ +.|.+.|.++++.
T Consensus 269 ~~~d-~~i~iwd~~~~~~ 285 (383)
T 3ei3_B 269 TDQR-NEIRVYSSYDWSK 285 (383)
T ss_dssp EESS-SEEEEEETTBTTS
T ss_pred EcCC-CcEEEEECCCCcc
Confidence 5566 8999999988653
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00044 Score=67.15 Aligned_cols=136 Identities=16% Similarity=0.132 Sum_probs=84.1
Q ss_pred CCCeEEEEeCCCCcEEEEeec-CCCceEEEEEEe--CCEEEEEEeeC----CEEEEEeCCCCcEEEEEecCCC-------
Q 023864 126 GRSSVRRVALETGKVEAINQM-EGSYFGEGLTLL--GEKLFQVTWLQ----KTGFIYDQNNLNKLEEFTHQMK------- 191 (276)
Q Consensus 126 g~S~I~~iDl~tgkv~~~~~l-~~~~FgEGit~~--g~~LyqlTwk~----~~v~V~D~~tlk~i~~~~~~~~------- 191 (276)
+...|.+||+++++....... +...+...+++. ++.|+...... ..++++|.++.+....+..+..
T Consensus 233 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~ 312 (706)
T 2z3z_A 233 HHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPL 312 (706)
T ss_dssp CEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCC
T ss_pred CeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECcc
Confidence 457899999999986543322 223344556664 45676655433 3899999999854444431111
Q ss_pred CeeEEee--CCCEEEEEC--CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeee-eEEE-CC-EEEEEeCCCCC----eEE
Q 023864 192 DGWGLAT--DGKVLFGSD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNE-LEFI-KG-EVWANVWQVWP----CIP 260 (276)
Q Consensus 192 EGWGLT~--Dg~~L~vSD--GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNE-LE~i-dG-~lyANvw~s~d----~I~ 260 (276)
.+..+++ ||+.|++++ |..+|+.+|.. .+.++.+.-+ ..++ .. +.+. || .||+..... + .|.
T Consensus 313 ~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~-~~~~~~l~~~--~~~v---~~~~~~spdg~~l~~~~~~~-~~~~~~l~ 385 (706)
T 2z3z_A 313 HPLTFLPGSNNQFIWQSRRDGWNHLYLYDTT-GRLIRQVTKG--EWEV---TNFAGFDPKGTRLYFESTEA-SPLERHFY 385 (706)
T ss_dssp SCCEECTTCSSEEEEEECTTSSCEEEEEETT-SCEEEECCCS--SSCE---EEEEEECTTSSEEEEEESSS-CTTCBEEE
T ss_pred CCceeecCCCCEEEEEEccCCccEEEEEECC-CCEEEecCCC--CeEE---EeeeEEcCCCCEEEEEecCC-CCceEEEE
Confidence 2346888 999999875 67789999854 4444444322 1122 22 3343 44 677666555 4 899
Q ss_pred EEeCCCCc
Q 023864 261 YAYLQAFG 268 (276)
Q Consensus 261 vIDp~T~~ 268 (276)
++|.++++
T Consensus 386 ~~d~~~~~ 393 (706)
T 2z3z_A 386 CIDIKGGK 393 (706)
T ss_dssp EEETTCCC
T ss_pred EEEcCCCC
Confidence 99998865
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0025 Score=57.78 Aligned_cols=164 Identities=11% Similarity=0.070 Sum_probs=105.3
Q ss_pred eEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecC-CCceEEEEEEe--CCEEEEEEeeC
Q 023864 93 IQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLL--GEKLFQVTWLQ 169 (276)
Q Consensus 93 ~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~-~~~FgEGit~~--g~~LyqlTwk~ 169 (276)
.+.+.++.|... +..+.|+|||+++.+++ .+.+.+|+..+++.+...... ....-..+++. +..+.......
T Consensus 167 ~~~~~~~~~~~~--V~~v~fspdg~~l~s~s---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~ 241 (365)
T 4h5i_A 167 LTEKFEIETRGE--VKDLHFSTDGKVVAYIT---GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKK 241 (365)
T ss_dssp TEEEEEEECSSC--CCEEEECTTSSEEEEEC---SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESS
T ss_pred CcEEEEeCCCCc--eEEEEEccCCceEEecc---ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCC
Confidence 455667777443 56999999998776544 567889999998876554333 33333345554 33444444433
Q ss_pred C---EEEEEeCCCCcEE----EEEecCCC--CeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeee
Q 023864 170 K---TGFIYDQNNLNKL----EEFTHQMK--DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNE 240 (276)
Q Consensus 170 ~---~v~V~D~~tlk~i----~~~~~~~~--EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNE 240 (276)
+ .+..+|..+.+.. ..+.-... ....++|||+.|.....+..|.++|.++++.++++.- |+. ..++-
T Consensus 242 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~---gH~-~~V~~ 317 (365)
T 4h5i_A 242 GKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQ---AHS-FAITE 317 (365)
T ss_dssp SCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETT---SSS-SCEEE
T ss_pred cceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecC---ccc-CCEEE
Confidence 3 5666776555432 22321111 1234679999998876678899999999998776532 221 13455
Q ss_pred eEEE-CCEEEEEeCCCCCeEEEEeCCC
Q 023864 241 LEFI-KGEVWANVWQVWPCIPYAYLQA 266 (276)
Q Consensus 241 LE~i-dG~lyANvw~s~d~I~vIDp~T 266 (276)
+.|. ||+..|..-.+ +.|-+.|..+
T Consensus 318 v~fSpdg~~laS~S~D-~tvrvw~ip~ 343 (365)
T 4h5i_A 318 VTISPDSTYVASVSAA-NTIHIIKLPL 343 (365)
T ss_dssp EEECTTSCEEEEEETT-SEEEEEECCT
T ss_pred EEECCCCCEEEEEeCC-CeEEEEEcCC
Confidence 6676 78888888777 9999999654
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00011 Score=73.59 Aligned_cols=114 Identities=11% Similarity=0.031 Sum_probs=84.3
Q ss_pred EEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEecCCCC-----------eeEEeeCCCEEEEECCCceEEEEcCCCCcEEE
Q 023864 156 TLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKD-----------GWGLATDGKVLFGSDGSSMLYQIDPQTLKVIR 224 (276)
Q Consensus 156 t~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~E-----------GWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~ 224 (276)
.+.+++||+.+. ++.++.+|++|.+++-+++...+. .-|++.+++.+|+...+.+|+.+|++|++++=
T Consensus 63 ~v~~g~vyv~~~-~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W 141 (668)
T 1kv9_A 63 LFHDGVIYTSMS-WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIW 141 (668)
T ss_dssp EEETTEEEEEEG-GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEECCEEEEECC-CCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEee
Confidence 467999999986 578999999999999998754211 13456678899998888899999999999998
Q ss_pred EEEeeeCCEeeeeeeeeEEECCEEEEEeCC-----CCCeEEEEeCCCCcEEE
Q 023864 225 KDIVRYKGREVRNLNELEFIKGEVWANVWQ-----VWPCIPYAYLQAFGSSL 271 (276)
Q Consensus 225 ~I~V~~~g~pv~~lNELE~idG~lyANvw~-----s~d~I~vIDp~T~~v~l 271 (276)
+..+.+..........-.+.+|.||+.... . ..|..+|++||+++=
T Consensus 142 ~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~-g~v~a~D~~tG~~~W 192 (668)
T 1kv9_A 142 SQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVR-GFVSAYDADTGKLAW 192 (668)
T ss_dssp EEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCB-CEEEEEETTTCCEEE
T ss_pred eeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCC-CEEEEEECCCCcEEE
Confidence 777643111111111123568999998765 4 689999999988753
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00077 Score=69.72 Aligned_cols=170 Identities=9% Similarity=0.010 Sum_probs=115.3
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC--C-EEEEEEeeCC
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG--E-KLFQVTWLQK 170 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g--~-~LyqlTwk~~ 170 (276)
+.+.++.. ....+..+.|++||.++.+++ .+..|++||+.+|+.+....-.... -..+++.. + .+....-.++
T Consensus 648 ~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~--~d~~v~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~sg~~d~ 723 (1249)
T 3sfz_A 648 EKLLDIKA-HEDEVLCCAFSSDDSYIATCS--ADKKVKIWDSATGKLVHTYDEHSEQ-VNCCHFTNKSNHLLLATGSNDF 723 (1249)
T ss_dssp CEEEEECC-CSSCEEEEEECTTSSEEEEEE--TTSEEEEEETTTCCEEEEEECCSSC-EEEEEECSSSSCCEEEEEETTS
T ss_pred CEEEEecc-CCCCEEEEEEecCCCEEEEEe--CCCeEEEEECCCCceEEEEcCCCCc-EEEEEEecCCCceEEEEEeCCC
Confidence 45556652 355668999999998777776 6788999999999988876544322 23455543 3 4555556788
Q ss_pred EEEEEeCCCCcEEEEEecCCC--CeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCE----ee----eeeee
Q 023864 171 TGFIYDQNNLNKLEEFTHQMK--DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGR----EV----RNLNE 240 (276)
Q Consensus 171 ~v~V~D~~tlk~i~~~~~~~~--EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~----pv----~~lNE 240 (276)
.+.+||..+.+.+.++.-... ....+++||+.|+....+..|.++|..+.+....+.+...-. +. ..+.-
T Consensus 724 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 803 (1249)
T 3sfz_A 724 FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKC 803 (1249)
T ss_dssp CEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCC
T ss_pred eEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEE
Confidence 999999999999888863211 233467899999888778899999999999888887643110 00 01111
Q ss_pred eEEE-CCE-EEEEeCCCCCeEEEEeCCCCcEE
Q 023864 241 LEFI-KGE-VWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 241 LE~i-dG~-lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
+.+. ||. +.+.. . +.|.+.|..+++..
T Consensus 804 ~~~s~dg~~l~~~~--~-~~v~~~d~~~~~~~ 832 (1249)
T 3sfz_A 804 CSWSADGDKIIVAA--K-NKVLLFDIHTSGLL 832 (1249)
T ss_dssp CCBCTTSSEEEEEE--T-TEEEEEETTTCCEE
T ss_pred EEECCCCCEEEEEc--C-CcEEEEEecCCCce
Confidence 2222 454 44433 5 88999999987654
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0015 Score=56.61 Aligned_cols=172 Identities=9% Similarity=-0.030 Sum_probs=107.3
Q ss_pred eeEEEEEEecCCCCCceEEEEecC--CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecC-CCceEEEEEEeC---CEEEEE
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAEN--DTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLLG---EKLFQV 165 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~d--g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~-~~~FgEGit~~g---~~Lyql 165 (276)
+.+.+.++.. ...-...+.|+++ +.++.+++ .+..|+.||+++++......+. ...--..+++.. +.++..
T Consensus 44 ~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 120 (379)
T 3jrp_A 44 THKLIDTLTG-HEGPVWRVDWAHPKFGTILASCS--YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLV 120 (379)
T ss_dssp EEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEE--TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEE
T ss_pred cceeeeEecC-CCCcEEEEEeCCCCCCCEEEEec--cCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEE
Confidence 3355666642 2445579999866 77776666 5778999999999743333332 122234566653 456666
Q ss_pred EeeCCEEEEEeCCCCcEEEEEecC--CCC--eeEEee-------------CCCEEEEECCCceEEEEcCCCCcEEEEEEe
Q 023864 166 TWLQKTGFIYDQNNLNKLEEFTHQ--MKD--GWGLAT-------------DGKVLFGSDGSSMLYQIDPQTLKVIRKDIV 228 (276)
Q Consensus 166 Twk~~~v~V~D~~tlk~i~~~~~~--~~E--GWGLT~-------------Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V 228 (276)
.-.++.+.+||..+.+....+... ... ...+.+ |++.|+....+..|.++|..+.+....+..
T Consensus 121 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 200 (379)
T 3jrp_A 121 ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES 200 (379)
T ss_dssp EETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEE
T ss_pred ecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEE
Confidence 778999999999887544333221 111 222445 688888877778899999887654433332
Q ss_pred eeCCEeeeeeeeeEEE-C---CEEEEEeCCCCCeEEEEeCCCCc
Q 023864 229 RYKGREVRNLNELEFI-K---GEVWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 229 ~~~g~pv~~lNELE~i-d---G~lyANvw~s~d~I~vIDp~T~~ 268 (276)
...++. ..++-+.+. + |.+.|..-.+ ..|.+.|..+++
T Consensus 201 ~~~~h~-~~v~~~~~sp~~~~~~~l~s~~~d-g~i~iwd~~~~~ 242 (379)
T 3jrp_A 201 TLEGHS-DWVRDVAWSPTVLLRSYLASVSQD-RTCIIWTQDNEQ 242 (379)
T ss_dssp EECCCS-SCEEEEEECCCCSSSEEEEEEETT-SCEEEEEESSTT
T ss_pred EEeccc-CcEeEEEECCCCCCCCeEEEEeCC-CEEEEEeCCCCC
Confidence 222221 234555666 3 6777777667 889999988863
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00058 Score=57.77 Aligned_cols=117 Identities=10% Similarity=0.096 Sum_probs=78.7
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCc----EEEEeecCCCceEEEEEEeC---CEEEEEEeeCCEEEEEe
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGK----VEAINQMEGSYFGEGLTLLG---EKLFQVTWLQKTGFIYD 176 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgk----v~~~~~l~~~~FgEGit~~g---~~LyqlTwk~~~v~V~D 176 (276)
..-+..+.|++|+.++.+++ .+..|+.||+.++. ......-. .---..+++.. ++++...-.++.+.+||
T Consensus 11 ~~~v~~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd 87 (351)
T 3f3f_A 11 DDLVHDVVYDFYGRHVATCS--SDQHIKVFKLDKDTSNWELSDSWRAH-DSSIVAIDWASPEYGRIIASASYDKTVKLWE 87 (351)
T ss_dssp SSCEEEEEECSSSSEEEEEE--TTSEEEEEEECSSSCCEEEEEEEECC-SSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred ccceeEEEEcCCCCEEEEee--CCCeEEEEECCCCCCcceecceeccC-CCcEEEEEEcCCCCCCEEEEEcCCCeEEEEe
Confidence 45568999999988777666 67789999999763 33333212 22234566643 55566666789999999
Q ss_pred CCCC---------cEEEEEecCCCC--eeEEeeC--CCEEEEECCCceEEEEcCCCCcEE
Q 023864 177 QNNL---------NKLEEFTHQMKD--GWGLATD--GKVLFGSDGSSMLYQIDPQTLKVI 223 (276)
Q Consensus 177 ~~tl---------k~i~~~~~~~~E--GWGLT~D--g~~L~vSDGS~~L~viDp~t~~vi 223 (276)
..+. +.+.++...... ...+.++ ++.|+....+..|.++|..+.+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 147 (351)
T 3f3f_A 88 EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDL 147 (351)
T ss_dssp ECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCT
T ss_pred cCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHh
Confidence 9876 445555422122 2335677 888888777889999998876643
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00041 Score=66.15 Aligned_cols=155 Identities=8% Similarity=-0.094 Sum_probs=95.9
Q ss_pred CCceEEEEecCCEEEEEcCCCCC--CeEEEEeC--CCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCC
Q 023864 105 AFTQGLLYAENDTLFESTGLYGR--SSVRRVAL--ETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNL 180 (276)
Q Consensus 105 aFTQGL~~~~dg~LyeStG~yg~--S~I~~iDl--~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tl 180 (276)
.....+.|+||..+|.+...-|. ..|..+|+ +.+.. ...-....-...++.+++.++.++-..+...+||.++.
T Consensus 65 ~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~~--~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g 142 (582)
T 3o4h_A 65 NSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQ--RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGG 142 (582)
T ss_dssp SEECEECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCCE--ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETT
T ss_pred cccccccCCCCeEEEEeccCCCCcceEEEEEeccCCCccc--cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCC
Confidence 45568889988335544321133 36667777 44433 22222233344777788877777777777779999888
Q ss_pred cEEEEEecCCCCeeEEeeCCCEEEE-EC-C--CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCE-EEEEeCC
Q 023864 181 NKLEEFTHQMKDGWGLATDGKVLFG-SD-G--SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGE-VWANVWQ 254 (276)
Q Consensus 181 k~i~~~~~~~~EGWGLT~Dg~~L~v-SD-G--S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~-lyANvw~ 254 (276)
+...-...+ ...+.++|||+.|+. ++ + ...|+++|+++.+.. ++ ..... ..+...|. ||+ |+.+. .
T Consensus 143 ~~~~l~~~~-~~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l--~~~~~---~~~~~~~SpDG~~l~~~~-~ 214 (582)
T 3o4h_A 143 GLRELARLP-GFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VF--DSGEG---SFSSASISPGMKVTAGLE-T 214 (582)
T ss_dssp EEEEEEEES-SCEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EE--CCSSC---EEEEEEECTTSCEEEEEE-C
T ss_pred cEEEeecCC-CceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-Ee--ecCCC---ccccceECCCCCEEEEcc-C
Confidence 765444443 245557899999874 43 2 367999999998865 33 22212 23555666 675 55333 3
Q ss_pred CCC--eEEEEeCCCCcEE
Q 023864 255 VWP--CIPYAYLQAFGSS 270 (276)
Q Consensus 255 s~d--~I~vIDp~T~~v~ 270 (276)
. . .|.++|+++++..
T Consensus 215 ~-~~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 215 A-REARLVTVDPRDGSVE 231 (582)
T ss_dssp S-SCEEEEEECTTTCCEE
T ss_pred C-CeeEEEEEcCCCCcEE
Confidence 3 4 8999999998765
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00013 Score=63.07 Aligned_cols=152 Identities=9% Similarity=0.039 Sum_probs=97.2
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCc----EEEEeecCCCceEEEEEEeCC-EEEEEEeeCCEEEEEeC-
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGK----VEAINQMEGSYFGEGLTLLGE-KLFQVTWLQKTGFIYDQ- 177 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgk----v~~~~~l~~~~FgEGit~~g~-~LyqlTwk~~~v~V~D~- 177 (276)
..-+..+.|++++.++.+++ .+..|+.||+++++ +............--+...+. .|+ ..-.++.+.+||.
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~--~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~~wd~~ 87 (342)
T 1yfq_A 11 KDYISDIKIIPSKSLLLITS--WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIY-VGTVQGEILKVDLI 87 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEEE--TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEE-EEETTSCEEEECSS
T ss_pred CCcEEEEEEcCCCCEEEEEc--CCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEE-EEcCCCeEEEEEec
Confidence 44567999999987666666 67899999999887 544443344444333333344 444 4447899999999
Q ss_pred CCCcEEEEEec--CCCC--eeEEeeCCCEEEEECCCceEEEEcCCC---------CcEEEEEEeeeCCEeeeeeeeeEEE
Q 023864 178 NNLNKLEEFTH--QMKD--GWGLATDGKVLFGSDGSSMLYQIDPQT---------LKVIRKDIVRYKGREVRNLNELEFI 244 (276)
Q Consensus 178 ~tlk~i~~~~~--~~~E--GWGLT~Dg~~L~vSDGS~~L~viDp~t---------~~vi~~I~V~~~g~pv~~lNELE~i 244 (276)
.+.+. .++.. .... ...+.+ ++.|+.+.....|.++|..+ .+.+.++.. . ..+..+.+.
T Consensus 88 ~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~---~~v~~~~~~ 159 (342)
T 1yfq_A 88 GSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKV---K---NKIFTMDTN 159 (342)
T ss_dssp SSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSS---C---CCEEEEEEC
T ss_pred cCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEee---C---CceEEEEec
Confidence 87765 44432 1112 233456 88888877888999999887 444333321 1 245566677
Q ss_pred CCEEEEEeCCCCCeEEEEeCCC-Cc
Q 023864 245 KGEVWANVWQVWPCIPYAYLQA-FG 268 (276)
Q Consensus 245 dG~lyANvw~s~d~I~vIDp~T-~~ 268 (276)
.+.+++.. .. ..|.+.|.++ +.
T Consensus 160 ~~~l~~~~-~d-~~i~i~d~~~~~~ 182 (342)
T 1yfq_A 160 SSRLIVGM-NN-SQVQWFRLPLCED 182 (342)
T ss_dssp SSEEEEEE-ST-TEEEEEESSCCTT
T ss_pred CCcEEEEe-CC-CeEEEEECCcccc
Confidence 66655543 45 6899999887 54
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0016 Score=57.04 Aligned_cols=153 Identities=18% Similarity=0.213 Sum_probs=102.2
Q ss_pred EEEEecCCEEEEEcCCCCC---CeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEee-------CCEEEEEeCC
Q 023864 109 GLLYAENDTLFESTGLYGR---SSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL-------QKTGFIYDQN 178 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg~---S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk-------~~~v~V~D~~ 178 (276)
+.+.. +++||.-.|..+. +.+.+||+++++-....++|....+-+++..+++||++--. .+.+.+||+.
T Consensus 103 ~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~ 181 (302)
T 2xn4_A 103 GAAVL-NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNAT 181 (302)
T ss_dssp EEEEE-TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETT
T ss_pred EEEEE-CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCC
Confidence 56665 5899987764332 57889999999877766777666666788889999998532 4679999998
Q ss_pred CCcE--EEEEecCCCCeeEEeeCCCEEEEECC------CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEE
Q 023864 179 NLNK--LEEFTHQMKDGWGLATDGKVLFGSDG------SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWA 250 (276)
Q Consensus 179 tlk~--i~~~~~~~~EGWGLT~Dg~~L~vSDG------S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyA 250 (276)
+.+- +...+.+ ..+.+++..++.||+--| .+.++.+|+++.+-...-... ..+. . --+...+|+||+
T Consensus 182 ~~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~r~--~-~~~~~~~~~i~v 256 (302)
T 2xn4_A 182 TNEWTYIAEMSTR-RSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMN-MCRR--N-AGVCAVNGLLYV 256 (302)
T ss_dssp TTEEEEECCCSSC-CBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCS-SCCB--S-CEEEEETTEEEE
T ss_pred CCcEEECCCCccc-cccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCC-Cccc--c-CeEEEECCEEEE
Confidence 7654 3334443 355566666677887654 468999999998665321111 1111 1 124466888886
Q ss_pred EeCC-----CCCeEEEEeCCCCc
Q 023864 251 NVWQ-----VWPCIPYAYLQAFG 268 (276)
Q Consensus 251 Nvw~-----s~d~I~vIDp~T~~ 268 (276)
-=.. . +.|.+.||++++
T Consensus 257 ~GG~~~~~~~-~~v~~yd~~~~~ 278 (302)
T 2xn4_A 257 VGGDDGSCNL-ASVEYYNPTTDK 278 (302)
T ss_dssp ECCBCSSSBC-CCEEEEETTTTE
T ss_pred ECCcCCCccc-ccEEEEcCCCCe
Confidence 5322 3 569999999865
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00037 Score=61.75 Aligned_cols=161 Identities=13% Similarity=0.108 Sum_probs=92.3
Q ss_pred CCceEEEEec-CCE-E-EEEcCCC--CCCeEEEEeCCCCcEEEEeecCCCceEEEEEE--eCCEEEEEEeeCC----EEE
Q 023864 105 AFTQGLLYAE-NDT-L-FESTGLY--GRSSVRRVALETGKVEAINQMEGSYFGEGLTL--LGEKLFQVTWLQK----TGF 173 (276)
Q Consensus 105 aFTQGL~~~~-dg~-L-yeStG~y--g~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~--~g~~LyqlTwk~~----~v~ 173 (276)
.+...+.|+| ||+ | |.+.+.. +...|..+|++++++..-..-.........++ +|++|+.+...++ .++
T Consensus 188 ~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~ 267 (388)
T 3pe7_A 188 QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIY 267 (388)
T ss_dssp SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEE
T ss_pred ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEE
Confidence 3457899999 875 3 4444311 25689999998876543322221122223444 4567866666543 399
Q ss_pred EEeCCCCcE--EEEEec-----CCCCeeEEeeCCCEEEEE---------CCCceEEEEcCCCCcEEEEEEeeeCCEe---
Q 023864 174 IYDQNNLNK--LEEFTH-----QMKDGWGLATDGKVLFGS---------DGSSMLYQIDPQTLKVIRKDIVRYKGRE--- 234 (276)
Q Consensus 174 V~D~~tlk~--i~~~~~-----~~~EGWGLT~Dg~~L~vS---------DGS~~L~viDp~t~~vi~~I~V~~~g~p--- 234 (276)
++|.++.+. +..++. ....|..+++||+.|+++ ++...|+++|+++.++. .+.-...+-.
T Consensus 268 ~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~ 346 (388)
T 3pe7_A 268 SADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH-RVARHDTSWKVFE 346 (388)
T ss_dssp EECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEE-EEEECCCCCCCBT
T ss_pred EEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE-EeccccCcccccc
Confidence 999998874 333331 013555789999988764 56789999999997653 3333221000
Q ss_pred ---eeeeeeeEEE-CC-EEE-EEeCCCCCeEEEEeCCC
Q 023864 235 ---VRNLNELEFI-KG-EVW-ANVWQVWPCIPYAYLQA 266 (276)
Q Consensus 235 ---v~~lNELE~i-dG-~ly-ANvw~s~d~I~vIDp~T 266 (276)
........+. || +|+ +..-.....|.++|..+
T Consensus 347 ~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~ 384 (388)
T 3pe7_A 347 GDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPE 384 (388)
T ss_dssp TBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCG
T ss_pred cccccCCCCccCCCCCCEEEEEecCCCceeEEEEECCh
Confidence 0012334454 56 454 44322226788888775
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0022 Score=55.97 Aligned_cols=154 Identities=15% Similarity=0.118 Sum_probs=102.3
Q ss_pred EEEEecCCEEEEEcCCCC---CCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEee-----CCEEEEEeCCCC
Q 023864 109 GLLYAENDTLFESTGLYG---RSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL-----QKTGFIYDQNNL 180 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg---~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk-----~~~v~V~D~~tl 180 (276)
+.... +++||.-.|..+ .+.+.+||+.+++-....+++....+-+++..+++||++-=. .+.+.+||+.+.
T Consensus 107 ~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~ 185 (301)
T 2vpj_A 107 GATTL-GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTG 185 (301)
T ss_dssp EEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred eEEEE-CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCC
Confidence 55555 589998777543 357999999999877666777666666778889999998532 467999998776
Q ss_pred cEE--EEEecCCCCeeEEeeCCCEEEEECC------CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEe
Q 023864 181 NKL--EEFTHQMKDGWGLATDGKVLFGSDG------SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANV 252 (276)
Q Consensus 181 k~i--~~~~~~~~EGWGLT~Dg~~L~vSDG------S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANv 252 (276)
+-. ...+.+ ..+.+++..++.||+--| .+.++.+|+++.+-...-.. ...+.- --+...+|+||+--
T Consensus 186 ~W~~~~~~p~~-r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~-p~~r~~---~~~~~~~~~i~v~G 260 (301)
T 2vpj_A 186 HWTNVTPMATK-RSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSM-TTPRCY---VGATVLRGRLYAIA 260 (301)
T ss_dssp EEEEECCCSSC-CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCC-SSCCBS---CEEEEETTEEEEEC
T ss_pred cEEeCCCCCcc-cccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCC-CCcccc---eeEEEECCEEEEEc
Confidence 543 333333 355566666778888655 46899999999876432111 111111 12345688888654
Q ss_pred CCCC----CeEEEEeCCCCc
Q 023864 253 WQVW----PCIPYAYLQAFG 268 (276)
Q Consensus 253 w~s~----d~I~vIDp~T~~ 268 (276)
.... +.|.+.|+++++
T Consensus 261 G~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 261 GYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp CBCSSSBEEEEEEEETTTTE
T ss_pred CcCCCcccccEEEEcCCCCe
Confidence 3220 468999999865
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.87 E-value=1.4e-06 Score=80.34 Aligned_cols=141 Identities=14% Similarity=0.060 Sum_probs=74.5
Q ss_pred CCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEecCCCCee
Q 023864 115 NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGW 194 (276)
Q Consensus 115 dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~EGW 194 (276)
++++|.++. +..|+.+|.+||+++-+.+.+ ... ..-...++++|+..-.++.++.+|++|.+.+.++++..++..
T Consensus 9 ~~~v~~gs~---dg~v~a~d~~tG~~~W~~~~~-~~~-s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~ 83 (369)
T 2hz6_A 9 ETLLFVSTL---DGSLHAVSKRTGSIKWTLKED-PVL-QVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV 83 (369)
T ss_dssp TTEEEEEET---TSEEEEEETTTCCEEEEEECC-CSC-CCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred CCEEEEEcC---CCEEEEEECCCCCEEEEecCC-Cce-ecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccc
Confidence 578887654 468999999999998887763 222 122334667887766789999999999988877764311111
Q ss_pred --EEee-CCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCCCCeEEEEeCCCCcE
Q 023864 195 --GLAT-DGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 195 --GLT~-Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s~d~I~vIDp~T~~v 269 (276)
.... +++.+|+......|+.+|++|++++-+...... . .+...++.||+..+ . ..|..+|++||++
T Consensus 84 ~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~---~----~~~p~~~~v~~~~~-d-g~v~a~d~~tG~~ 152 (369)
T 2hz6_A 84 QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA---D----SLSPSTSLLYLGRT-E-YTITMYDTKTREL 152 (369)
T ss_dssp TTCSCC-----CCCCEEEEEEEEECCC-----------------------------EEEEEE-E-EEEECCCSSSSSC
T ss_pred ccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc---c----cccccCCEEEEEec-C-CEEEEEECCCCCE
Confidence 1111 566777755567899999999999866655321 1 01114677887753 3 6799999999874
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00049 Score=57.16 Aligned_cols=143 Identities=15% Similarity=0.011 Sum_probs=83.5
Q ss_pred EEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCC-CcEEEEEecC---CCC
Q 023864 117 TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNN-LNKLEEFTHQ---MKD 192 (276)
Q Consensus 117 ~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~t-lk~i~~~~~~---~~E 192 (276)
++|.....-.+..|..||+++++.......+....+..+..++..|+.. .++.++++|.++ .+........ ...
T Consensus 11 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 88 (297)
T 2ojh_A 11 RLSTGPGGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLN--SEGLLYRLSLAGDPSPEKVDTGFATICNN 88 (297)
T ss_dssp -------CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEE--ETTEEEEEESSSCCSCEECCCTTCCCBCS
T ss_pred eEeecCCCCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEE--cCCeEEEEeCCCCCCceEecccccccccc
Confidence 4443332225678999999999887655555554433333334555544 488999999998 7665444321 113
Q ss_pred eeEEeeCCCEEEEEC----CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CC-EEEEEeCCCCC--eEEEEeC
Q 023864 193 GWGLATDGKVLFGSD----GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVWANVWQVWP--CIPYAYL 264 (276)
Q Consensus 193 GWGLT~Dg~~L~vSD----GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG-~lyANvw~s~d--~I~vIDp 264 (276)
...+++||+.|+.+. +...|+.+|.++.+.. .+.... ..+.+.+. || +|++..... . .|..+|.
T Consensus 89 ~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~------~~~~~~~spdg~~l~~~~~~~-~~~~l~~~~~ 160 (297)
T 2ojh_A 89 DHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPR-LMTKNL------PSYWHGWSPDGKSFTYCGIRD-QVFDIYSMDI 160 (297)
T ss_dssp CCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCE-ECCSSS------SEEEEEECTTSSEEEEEEEET-TEEEEEEEET
T ss_pred ceEECCCCCEEEEEEeCCCCcceEEEEECCCCceE-EeecCC------CccceEECCCCCEEEEEECCC-CceEEEEEEC
Confidence 456889999887754 4789999998877632 222211 13444555 45 455333223 3 6777777
Q ss_pred CCCcE
Q 023864 265 QAFGS 269 (276)
Q Consensus 265 ~T~~v 269 (276)
++++.
T Consensus 161 ~~~~~ 165 (297)
T 2ojh_A 161 DSGVE 165 (297)
T ss_dssp TTCCE
T ss_pred CCCcc
Confidence 77553
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00046 Score=61.19 Aligned_cols=111 Identities=7% Similarity=-0.003 Sum_probs=76.5
Q ss_pred CceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEE-EEeecCCCceEEEEEEeCC--EEEEEEeeCCEEEEEeCCCCcE
Q 023864 106 FTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVE-AINQMEGSYFGEGLTLLGE--KLFQVTWLQKTGFIYDQNNLNK 182 (276)
Q Consensus 106 FTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~-~~~~l~~~~FgEGit~~g~--~LyqlTwk~~~v~V~D~~tlk~ 182 (276)
....+.|+|||.++.+++ .+..|+.||+.+++.. .....+..---..+++..+ .|.... ++.+.+||..+.+.
T Consensus 172 ~i~~~~~~pdg~~lasg~--~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~--~~~v~iwd~~~~~~ 247 (343)
T 3lrv_A 172 EYSSGVLHKDSLLLALYS--PDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC--DQTVVCFDLRKDVG 247 (343)
T ss_dssp CCCEEEECTTSCEEEEEC--TTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE--SSBEEEEETTSSTT
T ss_pred ceEEEEECCCCCEEEEEc--CCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe--CCeEEEEEcCCCCc
Confidence 357999999999887766 7789999999999876 5555422223346666543 444444 66999999998877
Q ss_pred EEEEec------CC-CCeeEEeeCCCEEEEECC-CceEEEEcCCCC
Q 023864 183 LEEFTH------QM-KDGWGLATDGKVLFGSDG-SSMLYQIDPQTL 220 (276)
Q Consensus 183 i~~~~~------~~-~EGWGLT~Dg~~L~vSDG-S~~L~viDp~t~ 220 (276)
+.++.. +. .....+++||+.|.+..+ ++.|.++|.++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 248 TLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp CBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred ceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence 654431 11 113778899999988554 778888876543
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0029 Score=55.30 Aligned_cols=153 Identities=13% Similarity=0.148 Sum_probs=101.5
Q ss_pred EEEEecCCEEEEEcCCCC---CCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeC-----CEEEEEeCCCC
Q 023864 109 GLLYAENDTLFESTGLYG---RSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ-----KTGFIYDQNNL 180 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg---~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~-----~~v~V~D~~tl 180 (276)
+++.. +++||.-.|..+ .+.+.+||+.+++-....+++....+-+++..+++||++-=.+ +.+.+||+.+.
T Consensus 56 ~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~ 134 (302)
T 2xn4_A 56 GMVYM-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSN 134 (302)
T ss_dssp EEEEE-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTT
T ss_pred eEEEE-CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCC
Confidence 55555 589998777433 2579999999998777667776556667888899999986433 47899998876
Q ss_pred cEE--EEEecCCCCeeEEeeCCCEEEEECC--------CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEE
Q 023864 181 NKL--EEFTHQMKDGWGLATDGKVLFGSDG--------SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWA 250 (276)
Q Consensus 181 k~i--~~~~~~~~EGWGLT~Dg~~L~vSDG--------S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyA 250 (276)
+-. ...+.+ ..+-+.+..++.||+--| .+.++.+|+++.+-...-... ..+.- --+...+++||+
T Consensus 135 ~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~---~~~~~~~~~iyv 209 (302)
T 2xn4_A 135 EWFHVAPMNTR-RSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMS-TRRSG---AGVGVLNNLLYA 209 (302)
T ss_dssp EEEEECCCSSC-CBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCS-SCCBS---CEEEEETTEEEE
T ss_pred eEeecCCCCCc-ccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCc-ccccc---ccEEEECCEEEE
Confidence 543 333333 355565555667877543 467999999998765431111 11111 123466888886
Q ss_pred EeCC-----CCCeEEEEeCCCCc
Q 023864 251 NVWQ-----VWPCIPYAYLQAFG 268 (276)
Q Consensus 251 Nvw~-----s~d~I~vIDp~T~~ 268 (276)
-=.. . +.+.+.|+++++
T Consensus 210 ~GG~~~~~~~-~~~~~yd~~~~~ 231 (302)
T 2xn4_A 210 VGGHDGPLVR-KSVEVYDPTTNA 231 (302)
T ss_dssp ECCBSSSSBC-CCEEEEETTTTE
T ss_pred ECCCCCCccc-ceEEEEeCCCCC
Confidence 5322 4 679999999865
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.84 E-value=2.2e-06 Score=79.13 Aligned_cols=148 Identities=7% Similarity=-0.046 Sum_probs=72.2
Q ss_pred cCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC-CceEEEEEE-eCCEEEEEEeeCCEEEEEeCCCCcEEEEEecCCC
Q 023864 114 ENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG-SYFGEGLTL-LGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMK 191 (276)
Q Consensus 114 ~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~-~~FgEGit~-~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~ 191 (276)
.+|++|.+.+ .+..|..+|.+||+.+.+.+... ........+ .++.+|..+ .++.++.+|++|.+++.++..+
T Consensus 47 ~~g~~~v~~s--~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~-~dg~v~a~D~~tG~~~w~~~~~-- 121 (369)
T 2hz6_A 47 VEEPAFLPDP--NDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGK-KQDIWYVIDLLTGEKQQTLSSA-- 121 (369)
T ss_dssp ---CCEEECT--TTCCEEEC-----CCSEECSCCHHHHHTTCSCC-----CCCCE-EEEEEEEECCC-------------
T ss_pred cCCCEEEEeC--CCCEEEEEECCCCceeeeeeccCccccccCceEecCCEEEEEe-CCCEEEEEECCCCcEEEEecCC--
Confidence 3566666544 56789999999998765543321 000001112 466777665 4678999999999999888754
Q ss_pred CeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 192 DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 192 EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
....++++++.+|+......|+.+|++|++++-+........++-. .+. ..++.+|+.. .. ..|..+|++||++.
T Consensus 122 ~~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~~~~~~~-~~~-~~~~~v~~~~-~d-g~v~a~d~~tG~~~ 196 (369)
T 2hz6_A 122 FADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDYAASLPE-DDV-DYKMSHFVSN-GD-GLVVTVDSESGDVL 196 (369)
T ss_dssp -----------EEEEEEEEEEECCCSSSSSCCCEEEEEEECCBCCC-CCT-TCCCCEEEEE-TS-CEEEEECTTTCCEE
T ss_pred CcccccccCCEEEEEecCCEEEEEECCCCCEEEeEecccccCcccc-CCc-cccceEEEEC-CC-CEEEEEECCCCcEE
Confidence 2334677889999876667899999999998766655431112110 000 1137788865 35 78999999998764
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.003 Score=58.97 Aligned_cols=161 Identities=11% Similarity=0.109 Sum_probs=103.6
Q ss_pred EEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe-CCEEEEEEeeCCEEE
Q 023864 95 VVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQKTGF 173 (276)
Q Consensus 95 Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~-g~~LyqlTwk~~~v~ 173 (276)
.++++.. ...-..++.|++||+++.+++ .+..|+.||. +++.+....-... --.++++. ++++.+..-.++.+.
T Consensus 377 ~~~~~~~-~~~~v~~~~~s~dg~~l~~~~--~d~~v~~~~~-~~~~~~~~~~~~~-~v~~~~~s~d~~~l~~~~~d~~v~ 451 (577)
T 2ymu_A 377 LLQTLTG-HSSSVRGVAFSPDGQTIASAS--DDKTVKLWNR-NGQLLQTLTGHSS-SVWGVAFSPDDQTIASASDDKTVK 451 (577)
T ss_dssp EEEEEEC-CSSCEEEEEECTTSSCEEEEE--TTSEEEEECT-TCCEEEEEECCSS-CEEEEEECTTSSEEEEEETTSEEE
T ss_pred EEEEecC-CCCCeEEEEECCCCCEEEEEe--CCCEEEEEeC-CCCEEEEecCCCC-CeEEEEECCCCCEEEEEcCCCEEE
Confidence 4555543 234468999999998777666 6678999995 5666665543322 22356665 345555666789999
Q ss_pred EEeCCCCcEEEEEecCCC--CeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEE
Q 023864 174 IYDQNNLNKLEEFTHQMK--DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWA 250 (276)
Q Consensus 174 V~D~~tlk~i~~~~~~~~--EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyA 250 (276)
+||. +.+.+.++.-... ....+++||+.|..+.....|.++|. +++.++++.-.. ..++-|.+. ||+..|
T Consensus 452 ~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~-----~~v~~l~~s~dg~~l~ 524 (577)
T 2ymu_A 452 LWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS-----SSVRGVAFSPDGQTIA 524 (577)
T ss_dssp EEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCS-----SCEEEEEECTTSSCEE
T ss_pred EEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCC-----CCEEEEEEcCCCCEEE
Confidence 9996 5566777653212 23457789999988877889999994 677776654322 234555665 566555
Q ss_pred EeCCCCCeEEEEeCCCCcE
Q 023864 251 NVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 251 Nvw~s~d~I~vIDp~T~~v 269 (276)
..-.. ..|.+-|. +++.
T Consensus 525 s~~~d-g~v~lwd~-~~~~ 541 (577)
T 2ymu_A 525 SASDD-KTVKLWNR-NGQL 541 (577)
T ss_dssp EEETT-SEEEEECT-TSCE
T ss_pred EEECc-CEEEEEeC-CCCE
Confidence 55444 67777774 4443
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00043 Score=63.82 Aligned_cols=165 Identities=12% Similarity=0.063 Sum_probs=95.2
Q ss_pred EEEEEec--CCCCCceEEEEecCCEEEEEcCCCCC-----------CeEEEEeCCCCc------------EEEEeecCCC
Q 023864 95 VVNEFPH--DPRAFTQGLLYAENDTLFESTGLYGR-----------SSVRRVALETGK------------VEAINQMEGS 149 (276)
Q Consensus 95 Vv~~~Ph--d~~aFTQGL~~~~dg~LyeStG~yg~-----------S~I~~iDl~tgk------------v~~~~~l~~~ 149 (276)
|+..+|. ....+..+|.|++||.||.++|..+. .+|.++|++..- .......+-
T Consensus 118 i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~- 196 (353)
T 2g8s_A 118 VFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGI- 196 (353)
T ss_dssp EEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECC-
T ss_pred EEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcC-
Confidence 4455664 23456679999999999999986443 479999986420 001111221
Q ss_pred ceEEEEEEe--CCEEEEEEeeCC---EEEEEeCCCC-----------------------------cEEEEEecC-CCCee
Q 023864 150 YFGEGLTLL--GEKLFQVTWLQK---TGFIYDQNNL-----------------------------NKLEEFTHQ-MKDGW 194 (276)
Q Consensus 150 ~FgEGit~~--g~~LyqlTwk~~---~v~V~D~~tl-----------------------------k~i~~~~~~-~~EGW 194 (276)
.-+.|++++ +++||+.....+ .+.++.+... ..+..+... .+-|.
T Consensus 197 rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~ 276 (353)
T 2g8s_A 197 RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGM 276 (353)
T ss_dssp SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSCCCEEEE
T ss_pred cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCCCCCccCCeEEeCCCcCccee
Confidence 125578887 479999887643 3433322110 111111110 12222
Q ss_pred EEeeC------CCEEEEEC-CCceEEEEcCCCCcEEEEEEe-ee-CCEeeeeeeeeEEE-CCEEEEE-eCCCCCeEEEEe
Q 023864 195 GLATD------GKVLFGSD-GSSMLYQIDPQTLKVIRKDIV-RY-KGREVRNLNELEFI-KGEVWAN-VWQVWPCIPYAY 263 (276)
Q Consensus 195 GLT~D------g~~L~vSD-GS~~L~viDp~t~~vi~~I~V-~~-~g~pv~~lNELE~i-dG~lyAN-vw~s~d~I~vID 263 (276)
.+... ...||++| ...+|+.++.++.+++..... .. .++| -.++.. ||.||+. .+.+ +.|.+|.
T Consensus 277 ~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp----~~v~~~pdG~lyv~td~~~-g~I~ri~ 351 (353)
T 2g8s_A 277 AFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRI----RDVRTGPDGYLYVLTDESS-GELLKVS 351 (353)
T ss_dssp EEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCE----EEEEECTTSCEEEEECSTT-EEEEEEE
T ss_pred EEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCce----eEEEECCCCcEEEEEeCCC-CEEEEEe
Confidence 23221 25788888 789999999887665544333 11 2333 345554 7899986 5567 8999998
Q ss_pred CC
Q 023864 264 LQ 265 (276)
Q Consensus 264 p~ 265 (276)
|+
T Consensus 352 ~~ 353 (353)
T 2g8s_A 352 PR 353 (353)
T ss_dssp C-
T ss_pred CC
Confidence 74
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0011 Score=68.54 Aligned_cols=166 Identities=8% Similarity=-0.012 Sum_probs=111.2
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeCCE
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKT 171 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~~~ 171 (276)
+.+..++| ..-+..|.|++ |+++.+++ .+..|+.||+++++.+.....+.... .+++. ++.|+.. -.++.
T Consensus 50 ~~~~~~~~--~~~V~~l~fsp-g~~L~S~s--~D~~v~lWd~~~~~~~~~~~~~~~V~--~v~~sp~g~~l~sg-s~dg~ 121 (902)
T 2oaj_A 50 EVVIKLED--RSAIKEMRFVK-GIYLVVIN--AKDTVYVLSLYSQKVLTTVFVPGKIT--SIDTDASLDWMLIG-LQNGS 121 (902)
T ss_dssp EEEEECSS--CCCEEEEEEET-TTEEEEEE--TTCEEEEEETTTCSEEEEEECSSCEE--EEECCTTCSEEEEE-ETTSC
T ss_pred EEEEEcCC--CCCEEEEEEcC-CCEEEEEE--CcCeEEEEECCCCcEEEEEcCCCCEE--EEEECCCCCEEEEE-cCCCc
Confidence 44555566 44568999999 76556666 68899999999999888776544433 34443 4455544 46889
Q ss_pred EEEEeCCCCcEEEEEec--------------CCCCeeEEeeCC-CEEEEECCCceEEEEcCCCCcEEEEEEeee-CCEe-
Q 023864 172 GFIYDQNNLNKLEEFTH--------------QMKDGWGLATDG-KVLFGSDGSSMLYQIDPQTLKVIRKDIVRY-KGRE- 234 (276)
Q Consensus 172 v~V~D~~tlk~i~~~~~--------------~~~EGWGLT~Dg-~~L~vSDGS~~L~viDp~t~~vi~~I~V~~-~g~p- 234 (276)
+.+||.++.+.. .+.. ..-....+.|++ ..|.++.....| ++|.++.+.++++.... .|.+
T Consensus 122 V~lwd~~~~~~~-~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~ 199 (902)
T 2oaj_A 122 MIVYDIDRDQLS-SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPG 199 (902)
T ss_dssp EEEEETTTTEEE-EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCC
T ss_pred EEEEECCCCccc-cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCC
Confidence 999999988763 2221 011234456654 566676677789 99999998887765320 0000
Q ss_pred -----------eeeeeeeEEE-CCEEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 235 -----------VRNLNELEFI-KGEVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 235 -----------v~~lNELE~i-dG~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
-..++.+.|. ||..+|..-.+ ..|.+-|.++++.+
T Consensus 200 ~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~D-g~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 200 GDFSEKTNEKRTPKVIQSLYHPNSLHIITIHED-NSLVFWDANSGHMI 246 (902)
T ss_dssp STTCCCTTSCBCCCEEEEEECTTSSEEEEEETT-CCEEEEETTTCCEE
T ss_pred cccccccccccCCCeEEEEEcCCCCEEEEEECC-CeEEEEECCCCcEE
Confidence 1246666776 67777777667 89999999997754
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0025 Score=55.83 Aligned_cols=153 Identities=10% Similarity=0.029 Sum_probs=101.3
Q ss_pred EEEEecCCEEEEEcCCC--CCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeC------CEEEEEeCCCC
Q 023864 109 GLLYAENDTLFESTGLY--GRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ------KTGFIYDQNNL 180 (276)
Q Consensus 109 GL~~~~dg~LyeStG~y--g~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~------~~v~V~D~~tl 180 (276)
..+.. +++||.-.|.. ..+.+.+||+.+++-....++|...++-+++..+++||+.-=.+ +.+.+||+.+.
T Consensus 50 ~~~~~-~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 128 (306)
T 3ii7_A 50 ACVFW-DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTE 128 (306)
T ss_dssp EEEEE-TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTT
T ss_pred EEEEE-CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCC
Confidence 44444 57899877732 34789999999998776667776666667788899999986543 67999999876
Q ss_pred cE--EEEEecCCCCeeEEeeCCCEEEEECC----------CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEE
Q 023864 181 NK--LEEFTHQMKDGWGLATDGKVLFGSDG----------SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEV 248 (276)
Q Consensus 181 k~--i~~~~~~~~EGWGLT~Dg~~L~vSDG----------S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~l 248 (276)
+- +...+.+ ..+-+++.-+..||+--| .+.++.+|+++.+-...-... ..+. ---+...+++|
T Consensus 129 ~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~---~~~~~~~~~~i 203 (306)
T 3ii7_A 129 SWHTKPSMLTQ-RCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMI-EARK---NHGLVFVKDKI 203 (306)
T ss_dssp EEEEECCCSSC-CBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCS-SCCB---SCEEEEETTEE
T ss_pred ceEeCCCCcCC-cceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCcc-chhh---cceEEEECCEE
Confidence 54 3334443 355566555667887554 577999999998654321111 1111 11234568888
Q ss_pred EEEeC-----CCCCeEEEEeCCCCc
Q 023864 249 WANVW-----QVWPCIPYAYLQAFG 268 (276)
Q Consensus 249 yANvw-----~s~d~I~vIDp~T~~ 268 (276)
|+-=. .. +.|.+.|+++++
T Consensus 204 ~v~GG~~~~~~~-~~~~~yd~~~~~ 227 (306)
T 3ii7_A 204 FAVGGQNGLGGL-DNVEYYDIKLNE 227 (306)
T ss_dssp EEECCEETTEEB-CCEEEEETTTTE
T ss_pred EEEeCCCCCCCC-ceEEEeeCCCCc
Confidence 76421 14 679999999854
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0038 Score=54.39 Aligned_cols=153 Identities=16% Similarity=0.164 Sum_probs=100.4
Q ss_pred EEEEecCCEEEEEcCCCC---CCeEEEEeCCCCc---EEEEeecCCCceEEEEEEeCCEEEEEEee-----CCEEEEEeC
Q 023864 109 GLLYAENDTLFESTGLYG---RSSVRRVALETGK---VEAINQMEGSYFGEGLTLLGEKLFQVTWL-----QKTGFIYDQ 177 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg---~S~I~~iDl~tgk---v~~~~~l~~~~FgEGit~~g~~LyqlTwk-----~~~v~V~D~ 177 (276)
+.+.. +++||.-.|..+ .+.+.+||+.+++ -....++|....+-+++..+++||++-=. .+.+.+||+
T Consensus 57 ~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~ 135 (301)
T 2vpj_A 57 ASVSL-HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDP 135 (301)
T ss_dssp EEEEE-TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEET
T ss_pred cEEEE-CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcC
Confidence 44444 578998777432 3679999999988 65556677655566778889999998532 358999998
Q ss_pred CCCcE--EEEEecCCCCeeEEeeCCCEEEEECC------CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEE
Q 023864 178 NNLNK--LEEFTHQMKDGWGLATDGKVLFGSDG------SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVW 249 (276)
Q Consensus 178 ~tlk~--i~~~~~~~~EGWGLT~Dg~~L~vSDG------S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~ly 249 (276)
.+.+- +...+.+ ..+-+.+..+..||+--| .+.++++|+++.+-...-.. ...+. ---+...+++||
T Consensus 136 ~~~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~-p~~r~---~~~~~~~~~~i~ 210 (301)
T 2vpj_A 136 NIDQWSMLGDMQTA-REGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPM-ATKRS---GAGVALLNDHIY 210 (301)
T ss_dssp TTTEEEEEEECSSC-CBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCC-SSCCB---SCEEEEETTEEE
T ss_pred CCCeEEECCCCCCC-cccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCC-Ccccc---cceEEEECCEEE
Confidence 77653 4444443 355565555667777544 57899999999876533111 11111 112345688888
Q ss_pred EEeCC-----CCCeEEEEeCCCCc
Q 023864 250 ANVWQ-----VWPCIPYAYLQAFG 268 (276)
Q Consensus 250 ANvw~-----s~d~I~vIDp~T~~ 268 (276)
+-=.. . +.|.+.|+++++
T Consensus 211 v~GG~~~~~~~-~~v~~yd~~~~~ 233 (301)
T 2vpj_A 211 VVGGFDGTAHL-SSVEAYNIRTDS 233 (301)
T ss_dssp EECCBCSSSBC-CCEEEEETTTTE
T ss_pred EEeCCCCCccc-ceEEEEeCCCCc
Confidence 65432 4 679999999865
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0019 Score=58.34 Aligned_cols=164 Identities=10% Similarity=0.041 Sum_probs=108.1
Q ss_pred CCCceEEEEecC-CEEEEEcCCCCCCeEEEEeCCCCcEEEEee--cC--CCceEEEEEEe--CCEEEEEEeeCCEEEEEe
Q 023864 104 RAFTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQ--ME--GSYFGEGLTLL--GEKLFQVTWLQKTGFIYD 176 (276)
Q Consensus 104 ~aFTQGL~~~~d-g~LyeStG~yg~S~I~~iDl~tgkv~~~~~--l~--~~~FgEGit~~--g~~LyqlTwk~~~v~V~D 176 (276)
..+...+.|.++ +..+.+++ ++..|+.||+++++.+.... .+ .......+.+. ++.+++..-.++++.+||
T Consensus 157 ~~~v~~~~~~~~~~~~l~s~s--~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd 234 (380)
T 3iz6_a 157 KGYASSCQYVPDQETRLITGS--GDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWD 234 (380)
T ss_dssp SSCCCCCBCCSSSSSCEEEEC--TTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEE
T ss_pred CcceEEEEEecCCCCEEEEEC--CCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEE
Confidence 334456777775 34445556 78899999999998776542 11 12223344443 567777777899999999
Q ss_pred CC-CCcEEEEEec-C-CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeC--CEeeeeeeeeEEE-CCEEEE
Q 023864 177 QN-NLNKLEEFTH-Q-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYK--GREVRNLNELEFI-KGEVWA 250 (276)
Q Consensus 177 ~~-tlk~i~~~~~-~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~--g~pv~~lNELE~i-dG~lyA 250 (276)
.. +.+.+.++.- . .-....+.|||+.|+....+..|.++|..+.+.+........ ......++-+.+. +|.+.+
T Consensus 235 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 314 (380)
T 3iz6_a 235 LRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLF 314 (380)
T ss_dssp TTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEE
T ss_pred CCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEE
Confidence 87 4566666642 1 124456788999988877788999999999987766543221 1111223445554 566666
Q ss_pred EeCCCCCeEEEEeCCCCcEE
Q 023864 251 NVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 251 Nvw~s~d~I~vIDp~T~~v~ 270 (276)
.-..+ ..|.+-|..+++.+
T Consensus 315 ~g~~d-g~i~vwd~~~~~~~ 333 (380)
T 3iz6_a 315 AGYSN-GDCYVWDTLLAEMV 333 (380)
T ss_dssp EECTT-SCEEEEETTTCCEE
T ss_pred EEECC-CCEEEEECCCCceE
Confidence 66666 89999999887654
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0031 Score=55.20 Aligned_cols=165 Identities=11% Similarity=-0.014 Sum_probs=106.5
Q ss_pred EEEEEecCCCCCceEEEEecCCEEEEEcCCC-C---CCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEee--
Q 023864 95 VVNEFPHDPRAFTQGLLYAENDTLFESTGLY-G---RSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL-- 168 (276)
Q Consensus 95 Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~y-g---~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk-- 168 (276)
.+...|.....+ +.... +++||.-.|.- + .+.+.+||+.+++-....++|...++-+++..+++||++--.
T Consensus 84 ~~~~~p~~r~~~--~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 160 (306)
T 3ii7_A 84 SKLGPPTPRDSL--AACAA-EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLG 160 (306)
T ss_dssp EEECCSSCCBSC--EEEEE-TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEES
T ss_pred ECCCCCccccce--eEEEE-CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCC
Confidence 344455433333 55555 58999877742 1 367999999999876666777655666778889999998643
Q ss_pred -------CCEEEEEeCCCCcE--EEEEecCCCCeeEEeeCCCEEEEECC------CceEEEEcCCCCcEEEEEEeeeCCE
Q 023864 169 -------QKTGFIYDQNNLNK--LEEFTHQMKDGWGLATDGKVLFGSDG------SSMLYQIDPQTLKVIRKDIVRYKGR 233 (276)
Q Consensus 169 -------~~~v~V~D~~tlk~--i~~~~~~~~EGWGLT~Dg~~L~vSDG------S~~L~viDp~t~~vi~~I~V~~~g~ 233 (276)
.+.+.+||+.+.+- +...+.+ ..+-+++..++.||+--| .+.++++|+++.+-... ..-..
T Consensus 161 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~---~~~p~ 236 (306)
T 3ii7_A 161 NNVSGRVLNSCEVYDPATETWTELCPMIEA-RKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV---SPMPW 236 (306)
T ss_dssp CTTTCEECCCEEEEETTTTEEEEECCCSSC-CBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEEC---CCCSC
T ss_pred CCCcccccceEEEeCCCCCeEEECCCccch-hhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC---CCCCC
Confidence 56799999987754 3333333 355566655677887654 46899999999865422 11111
Q ss_pred eeeeeeeeEEECCEEEEEeC-----CCCCeEEEEeCCCCc
Q 023864 234 EVRNLNELEFIKGEVWANVW-----QVWPCIPYAYLQAFG 268 (276)
Q Consensus 234 pv~~lNELE~idG~lyANvw-----~s~d~I~vIDp~T~~ 268 (276)
+... --+...+|+||+-=. .. +.|.+.|+++++
T Consensus 237 ~r~~-~~~~~~~~~i~v~GG~~~~~~~-~~~~~yd~~~~~ 274 (306)
T 3ii7_A 237 KGVT-VKCAAVGSIVYVLAGFQGVGRL-GHILEYNTETDK 274 (306)
T ss_dssp CBSC-CEEEEETTEEEEEECBCSSSBC-CEEEEEETTTTE
T ss_pred Cccc-eeEEEECCEEEEEeCcCCCeee-eeEEEEcCCCCe
Confidence 1111 123355888886543 45 789999999965
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0026 Score=56.40 Aligned_cols=163 Identities=12% Similarity=0.059 Sum_probs=97.9
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeec-CCCceEEEEEEeCC-----------E
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM-EGSYFGEGLTLLGE-----------K 161 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l-~~~~FgEGit~~g~-----------~ 161 (276)
+.+.++.. .......+.|+||++++.++| .+..|+.||+........... +....-..+++..+ .
T Consensus 109 ~~~~~~~~-h~~~v~~v~~sp~~~~l~s~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 185 (343)
T 2xzm_R 109 TTYKRFVG-HQSEVYSVAFSPDNRQILSAG--AEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAP 185 (343)
T ss_dssp CEEEEEEC-CCSCEEEEEECSSTTEEEEEE--TTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCC
T ss_pred cEEEEEcC-CCCcEEEEEECCCCCEEEEEc--CCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCC
Confidence 34555542 244567999999988777777 678999999985433222211 11222334444322 3
Q ss_pred EEEEEeeCCEEEEEeCCCCcEEEEEecCCC--CeeEEeeCCCEEEEECCCceEEEEcCCCC-cEEEEEEeeeCCEeeeee
Q 023864 162 LFQVTWLQKTGFIYDQNNLNKLEEFTHQMK--DGWGLATDGKVLFGSDGSSMLYQIDPQTL-KVIRKDIVRYKGREVRNL 238 (276)
Q Consensus 162 LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~--EGWGLT~Dg~~L~vSDGS~~L~viDp~t~-~vi~~I~V~~~g~pv~~l 238 (276)
++...-.++.+.+|| .+.+.+.++.-... ....+++||+.|.....+..|.++|..+. ........ +. .+
T Consensus 186 ~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~---~~---~v 258 (343)
T 2xzm_R 186 YFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDA---GS---TI 258 (343)
T ss_dssp EEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEEC---SS---CE
T ss_pred EEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecC---CC---cE
Confidence 555566789999999 45566666642211 23346789999988777889999998443 33333322 22 35
Q ss_pred eeeEEEC-CEEEEEeCCCCCeEEEEeCCCCc
Q 023864 239 NELEFIK-GEVWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 239 NELE~id-G~lyANvw~s~d~I~vIDp~T~~ 268 (276)
+.+.+.. +.+.+ +... +.|.+.|..+++
T Consensus 259 ~~v~~sp~~~~la-~~~d-~~v~iw~~~~~~ 287 (343)
T 2xzm_R 259 NQIAFNPKLQWVA-VGTD-QGVKIFNLMTQS 287 (343)
T ss_dssp EEEEECSSSCEEE-EEES-SCEEEEESSSCC
T ss_pred EEEEECCCCCEEE-EECC-CCEEEEEeCCCC
Confidence 5566653 44333 3345 678888877644
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00039 Score=62.51 Aligned_cols=115 Identities=9% Similarity=0.092 Sum_probs=82.4
Q ss_pred CCCceEEEEecCC-EEEEEcCCCCCCeEEEEeCCCCcE----EEEeecCCCc-----------eEEEEEEeCC-EEEEEE
Q 023864 104 RAFTQGLLYAEND-TLFESTGLYGRSSVRRVALETGKV----EAINQMEGSY-----------FGEGLTLLGE-KLFQVT 166 (276)
Q Consensus 104 ~aFTQGL~~~~dg-~LyeStG~yg~S~I~~iDl~tgkv----~~~~~l~~~~-----------FgEGit~~g~-~LyqlT 166 (276)
...+..+.|+|++ .++.+++ .+..|+.||+.+++. .........+ --..+++..+ ++....
T Consensus 226 ~~~v~~~~~~p~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 303 (447)
T 3dw8_B 226 TEVITAAEFHPNSCNTFVYSS--SKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTR 303 (447)
T ss_dssp CCCEEEEEECSSCTTEEEEEE--TTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEE
T ss_pred CcceEEEEECCCCCcEEEEEe--CCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEe
Confidence 4456799999997 7777666 677999999999885 4444333221 2345666543 333333
Q ss_pred eeCCEEEEEeCCC-CcEEEEEecCCCCe-------------------eEEeeCCCEEEEECCCceEEEEcCCCCcEE
Q 023864 167 WLQKTGFIYDQNN-LNKLEEFTHQMKDG-------------------WGLATDGKVLFGSDGSSMLYQIDPQTLKVI 223 (276)
Q Consensus 167 wk~~~v~V~D~~t-lk~i~~~~~~~~EG-------------------WGLT~Dg~~L~vSDGS~~L~viDp~t~~vi 223 (276)
-. +.+.+||..+ .+.+.++... ++ ..+++||+.|+....+..|.++|.++.+.+
T Consensus 304 ~~-~~v~iwd~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 304 DY-LSVKVWDLNMENRPVETYQVH--EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp ES-SEEEEEETTCCSSCSCCEESC--GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred eC-CeEEEEeCCCCccccceeecc--ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence 33 9999999987 7888888643 21 678899999988777889999999998876
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00081 Score=66.39 Aligned_cols=156 Identities=13% Similarity=0.068 Sum_probs=90.5
Q ss_pred ceEEEEecCCE-EEEEcCCCCCC--eEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeC------------
Q 023864 107 TQGLLYAENDT-LFESTGLYGRS--SVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQ------------ 169 (276)
Q Consensus 107 TQGL~~~~dg~-LyeStG~yg~S--~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~------------ 169 (276)
..++.|+|||+ |..+...-|.. .|+++|+++|+..... ++...+ .++++. |+.||.....+
T Consensus 127 ~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~-~~~~~~-~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~ 204 (710)
T 2xdw_A 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-LERVKF-SCMAWTHDGKGMFYNAYPQQDGKSDGTETST 204 (710)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-EEEECS-CCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred EEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccc-ccCccc-ceEEEEeCCCEEEEEEECCcccccccccccc
Confidence 35789999986 33222211443 8999999999876532 221111 245554 56788776543
Q ss_pred ---CEEEEEeCCCCcEEEEE--ecCC-C---CeeEEeeCCCEEEEE-C-C---CceEEEEcCCC------Cc-EEEEEEe
Q 023864 170 ---KTGFIYDQNNLNKLEEF--THQM-K---DGWGLATDGKVLFGS-D-G---SSMLYQIDPQT------LK-VIRKDIV 228 (276)
Q Consensus 170 ---~~v~V~D~~tlk~i~~~--~~~~-~---EGWGLT~Dg~~L~vS-D-G---S~~L~viDp~t------~~-vi~~I~V 228 (276)
..++++|..+.+..... ..+. + .+..+++||++|+++ . + .+.|+++|.++ .+ ..+.+..
T Consensus 205 ~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~ 284 (710)
T 2xdw_A 205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID 284 (710)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred CCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeC
Confidence 35999999887632222 2110 1 245578999988763 2 3 57999999886 43 2444544
Q ss_pred eeCCEeeeeeeeeEEECCEEEEEeCCC--CCeEEEEeCCCCc
Q 023864 229 RYKGREVRNLNELEFIKGEVWANVWQV--WPCIPYAYLQAFG 268 (276)
Q Consensus 229 ~~~g~pv~~lNELE~idG~lyANvw~s--~d~I~vIDp~T~~ 268 (276)
..++... -..-.+++||..--.. ...|.++|.++++
T Consensus 285 ~~~~~~~----~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 322 (710)
T 2xdw_A 285 NFEGEYD----YVTNEGTVFTFKTNRHSPNYRLINIDFTDPE 322 (710)
T ss_dssp SSSSCEE----EEEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred CCCcEEE----EEeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence 3322211 1123355666443221 1379999998864
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0012 Score=60.19 Aligned_cols=165 Identities=10% Similarity=-0.033 Sum_probs=92.9
Q ss_pred CCCCceEEEEec--------CCEEEEEcCCCCCCeEEEEeCCCCcEEEEe-ecCCCceEEEEEEeC--CEEEEEEeeCCE
Q 023864 103 PRAFTQGLLYAE--------NDTLFESTGLYGRSSVRRVALETGKVEAIN-QMEGSYFGEGLTLLG--EKLFQVTWLQKT 171 (276)
Q Consensus 103 ~~aFTQGL~~~~--------dg~LyeStG~yg~S~I~~iDl~tgkv~~~~-~l~~~~FgEGit~~g--~~LyqlTwk~~~ 171 (276)
...+++.+.|+| ||+++.|+| .+..|+.||+.+++..... ..... ...+++.. ..+.+..-.++.
T Consensus 135 H~~~v~~v~~~p~~~~~~~~d~~~las~s--~D~tv~~Wd~~~~~~~~~~~~~~~~--v~~v~~~p~~~~~l~~~~~d~~ 210 (393)
T 4gq1_A 135 HHNFVNDIDIADVYSADNRLAEQVIASVG--DDCTLIIWRLTDEGPILAGYPLSSP--GISVQFRPSNPNQLIVGERNGN 210 (393)
T ss_dssp CSSCEEEEEEEEEECTTCSEEEEEEEEEE--TTSEEEEEEEETTEEEEEEEECSSC--EEEEEEETTEEEEEEEEETTSE
T ss_pred CCCceEEEEEccccccccCCCCCEEEEEE--CCCeEEEEECCCCceeeeecCCCCC--cEEEEECCCCCceEEecCCCCE
Confidence 467889999987 789999988 7899999999887644433 33333 45677764 356677778999
Q ss_pred EEEEeCCCCcEEEEEecC--C-------------------------CCeeEEe-eCCCEEEEECCCceEEEEcCCCCcEE
Q 023864 172 GFIYDQNNLNKLEEFTHQ--M-------------------------KDGWGLA-TDGKVLFGSDGSSMLYQIDPQTLKVI 223 (276)
Q Consensus 172 v~V~D~~tlk~i~~~~~~--~-------------------------~EGWGLT-~Dg~~L~vSDGS~~L~viDp~t~~vi 223 (276)
+.+||..+.+...+.... . -....+. +||+.|+......++.++|..+.+..
T Consensus 211 v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~ 290 (393)
T 4gq1_A 211 IRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDY 290 (393)
T ss_dssp EEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC------
T ss_pred EEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCC
Confidence 999999887765543210 0 0111222 68888888777889999999887766
Q ss_pred EEEEeeeCC-Eeeee---eee---------eEEE--CCEEEEEeCCCCCeEEEEeCCCCcEEE
Q 023864 224 RKDIVRYKG-REVRN---LNE---------LEFI--KGEVWANVWQVWPCIPYAYLQAFGSSL 271 (276)
Q Consensus 224 ~~I~V~~~g-~pv~~---lNE---------LE~i--dG~lyANvw~s~d~I~vIDp~T~~v~l 271 (276)
..+...... ..+.. ... ..+. .+..|+.....+..|.+.|.++++...
T Consensus 291 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~ 353 (393)
T 4gq1_A 291 NEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNS 353 (393)
T ss_dssp -------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCE
T ss_pred ceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEE
Confidence 555432100 00000 000 0111 133444433332789999999877543
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00012 Score=64.61 Aligned_cols=170 Identities=9% Similarity=-0.008 Sum_probs=91.8
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCc-EEEEeecC-CCceEEEEEEe-CCEEEEEEeeCC
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGK-VEAINQME-GSYFGEGLTLL-GEKLFQVTWLQK 170 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgk-v~~~~~l~-~~~FgEGit~~-g~~LyqlTwk~~ 170 (276)
+.+.++.. .......+.|++++.++.+++ .+..|+.||+++++ ......+. ...--..+++. +++++...-.++
T Consensus 46 ~~~~~~~~-h~~~v~~~~~s~~~~~l~s~s--~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 122 (377)
T 3dwl_C 46 KHARTFSD-HDKIVTCVDWAPKSNRIVTCS--QDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGAR 122 (377)
T ss_dssp EECCCBCC-CSSCEEEEEECTTTCCEEEEE--TTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSS
T ss_pred EEEEEEec-CCceEEEEEEeCCCCEEEEEe--CCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCC
Confidence 34445542 244557999999988777666 67789999999987 11111121 11122345554 234444445688
Q ss_pred EEEEEeCCCCc---EEEEEecC-CC--CeeEEeeCCCEEEEECCCceEEEEcCCCCcEE--------------EEEEeee
Q 023864 171 TGFIYDQNNLN---KLEEFTHQ-MK--DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVI--------------RKDIVRY 230 (276)
Q Consensus 171 ~v~V~D~~tlk---~i~~~~~~-~~--EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi--------------~~I~V~~ 230 (276)
.+.+||.++.+ .+..+..+ .. ....+.+||+.|+....+..|.++|.++.++. .+.....
T Consensus 123 ~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (377)
T 3dwl_C 123 VISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY 202 (377)
T ss_dssp CEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC
T ss_pred eEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc
Confidence 99999998876 36666531 11 23346678998888766788999997643311 1111111
Q ss_pred CCEeeeeeeeeEEE-CCEEEEEeCCCCCeEEEEeCCCCcE
Q 023864 231 KGREVRNLNELEFI-KGEVWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 231 ~g~pv~~lNELE~i-dG~lyANvw~s~d~I~vIDp~T~~v 269 (276)
++ -..++.+.+. +|...|..-.. ..|.+.|.++++.
T Consensus 203 -~~-~~~v~~~~~sp~~~~l~~~~~d-~~i~iwd~~~~~~ 239 (377)
T 3dwl_C 203 -PS-GGWVHAVGFSPSGNALAYAGHD-SSVTIAYPSAPEQ 239 (377)
T ss_dssp -CC-SSSEEEEEECTTSSCEEEEETT-TEEC-CEECSTTS
T ss_pred -cC-CceEEEEEECCCCCEEEEEeCC-CcEEEEECCCCCC
Confidence 11 1234555565 56555555455 7888888888764
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00016 Score=69.74 Aligned_cols=161 Identities=11% Similarity=0.015 Sum_probs=94.2
Q ss_pred CceEEEEecCCE-EEEEcCC-------CCCCeEEEEeCCC------CcEEEEeecCCCceEEEEEE--eCCEEEEEEeeC
Q 023864 106 FTQGLLYAENDT-LFESTGL-------YGRSSVRRVALET------GKVEAINQMEGSYFGEGLTL--LGEKLFQVTWLQ 169 (276)
Q Consensus 106 FTQGL~~~~dg~-LyeStG~-------yg~S~I~~iDl~t------gkv~~~~~l~~~~FgEGit~--~g~~LyqlTwk~ 169 (276)
...++.|+|||+ |+.+... .+...|..+|+++ ++..... .....+..++++ +|++|+...|..
T Consensus 131 ~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~SpDG~~la~~~~~~ 209 (662)
T 3azo_A 131 RWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELS-DDAHRFVTGPRLSPDGRQAVWLAWDH 209 (662)
T ss_dssp EEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESS-CSCSSEECCCEECTTSSEEEEEEECT
T ss_pred cccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEE-ecCCCcccCceECCCCCEEEEEECCC
Confidence 346889999985 5443321 2347899999998 7653322 022223334444 467888888754
Q ss_pred -------CEEEEEeCC-CC--cEEEEEecC---CCCeeEEeeCCCEEEEECC--CceEEEEcCCCCcEEEEEEeee-CCE
Q 023864 170 -------KTGFIYDQN-NL--NKLEEFTHQ---MKDGWGLATDGKVLFGSDG--SSMLYQIDPQTLKVIRKDIVRY-KGR 233 (276)
Q Consensus 170 -------~~v~V~D~~-tl--k~i~~~~~~---~~EGWGLT~Dg~~L~vSDG--S~~L~viDp~t~~vi~~I~V~~-~g~ 233 (276)
..++++|.+ +. +...++... .......++||+.+|.+|. ..+|+.+|+++.+......... .+.
T Consensus 210 ~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~ 289 (662)
T 3azo_A 210 PRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAG 289 (662)
T ss_dssp TCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSC
T ss_pred CCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccC
Confidence 589999998 55 233344321 1122346789997777874 4499999998887643222110 011
Q ss_pred eeee--eeeeEEE-CCEEE-EEeCCCCCeEEEEeCCCCc
Q 023864 234 EVRN--LNELEFI-KGEVW-ANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 234 pv~~--lNELE~i-dG~ly-ANvw~s~d~I~vIDp~T~~ 268 (276)
|... ...+.+. +|+++ ...... ..|.++|+++++
T Consensus 290 p~w~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~d~~~~~ 327 (662)
T 3azo_A 290 PLWTPGMRWFAPLANGLIAVVHGKGA-AVLGILDPESGE 327 (662)
T ss_dssp CCCSTTCCSEEECTTSCEEEEEBSSS-CEEEEEETTTTE
T ss_pred ccccccCceEeEeCCCEEEEEEEcCc-cEEEEEECCCCc
Confidence 1111 2334454 56544 333355 789999988765
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00047 Score=59.54 Aligned_cols=162 Identities=7% Similarity=-0.031 Sum_probs=100.9
Q ss_pred EEEEEecCCCCCceEEEEecCCE-EEEEcCCCCCCeEEEEeC-CCCcEEEEee--cCCCceEEEEEEeCCEEEEEEeeCC
Q 023864 95 VVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVAL-ETGKVEAINQ--MEGSYFGEGLTLLGEKLFQVTWLQK 170 (276)
Q Consensus 95 Vv~~~Phd~~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl-~tgkv~~~~~--l~~~~FgEGit~~g~~LyqlTwk~~ 170 (276)
+...+.|. .-...+.|++++. ++.+++ .+..|+.||+ ++++...... -... -..+++..+.++...-.++
T Consensus 49 ~~~~~~~~--~~v~~~~~~~~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~--v~~l~~~~~~~l~s~~~d~ 122 (342)
T 1yfq_A 49 LLQSLRYK--HPLLCCNFIDNTDLQIYVGT--VQGEILKVDLIGSPSFQALTNNEANLG--ICRICKYGDDKLIAASWDG 122 (342)
T ss_dssp EEEEEECS--SCEEEEEEEESSSEEEEEEE--TTSCEEEECSSSSSSEEECBSCCCCSC--EEEEEEETTTEEEEEETTS
T ss_pred ceeeeecC--CceEEEEECCCCCcEEEEEc--CCCeEEEEEeccCCceEeccccCCCCc--eEEEEeCCCCEEEEEcCCC
Confidence 33444663 3457999999988 666655 6778999999 9998733222 2222 3456665344444555689
Q ss_pred EEEEEeCCC---------CcEEEEEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCC-CcEEEEEEeeeCCEeeeeeee
Q 023864 171 TGFIYDQNN---------LNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQT-LKVIRKDIVRYKGREVRNLNE 240 (276)
Q Consensus 171 ~v~V~D~~t---------lk~i~~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t-~~vi~~I~V~~~g~pv~~lNE 240 (276)
.+.+||..+ .+.+.++..+ ..-+.++..++.+++......|.++|..+ ++............ .++.
T Consensus 123 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~---~i~~ 198 (342)
T 1yfq_A 123 LIEVIDPRNYGDGVIAVKNLNSNNTKVK-NKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKY---QIRD 198 (342)
T ss_dssp EEEEECHHHHTTBCEEEEESCSSSSSSC-CCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSS---CEEE
T ss_pred eEEEEcccccccccccccCCeeeEEeeC-CceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCCCC---ceeE
Confidence 999999887 6666666544 35556666555677777788999999998 55422211111112 3445
Q ss_pred eEEE--CCEEEEEeCCCCCeEEEEeCCCC
Q 023864 241 LEFI--KGEVWANVWQVWPCIPYAYLQAF 267 (276)
Q Consensus 241 LE~i--dG~lyANvw~s~d~I~vIDp~T~ 267 (276)
+.+. +|..++..-.. ..|.+.|..++
T Consensus 199 i~~~~~~~~~l~~~~~d-g~i~i~~~~~~ 226 (342)
T 1yfq_A 199 VALLPKEQEGYACSSID-GRVAVEFFDDQ 226 (342)
T ss_dssp EEECSGGGCEEEEEETT-SEEEEEECCTT
T ss_pred EEECCCCCCEEEEEecC-CcEEEEEEcCC
Confidence 5566 45555555455 77777665553
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.001 Score=63.98 Aligned_cols=159 Identities=8% Similarity=-0.077 Sum_probs=94.5
Q ss_pred CCceEEEEecCCE-EEEEcCC-----CCCCeEEEEeCC-CCcEE--EEeecCCCceEEEEEEe-CCEEEEEEeeCC--EE
Q 023864 105 AFTQGLLYAENDT-LFESTGL-----YGRSSVRRVALE-TGKVE--AINQMEGSYFGEGLTLL-GEKLFQVTWLQK--TG 172 (276)
Q Consensus 105 aFTQGL~~~~dg~-LyeStG~-----yg~S~I~~iDl~-tgkv~--~~~~l~~~~FgEGit~~-g~~LyqlTwk~~--~v 172 (276)
.+..++.|+|||+ |+.+... ++.+.|..+|++ +|++. ..+.-+.......+++. ++++|.++-.++ .+
T Consensus 188 ~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l 267 (662)
T 3azo_A 188 RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNL 267 (662)
T ss_dssp SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEE
T ss_pred CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEE
Confidence 4556788999985 5433322 134789999999 68321 22211111122345554 345888877777 89
Q ss_pred EEEeCCCCcEEEEEecCC----------CCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeee
Q 023864 173 FIYDQNNLNKLEEFTHQM----------KDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNEL 241 (276)
Q Consensus 173 ~V~D~~tlk~i~~~~~~~----------~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNEL 241 (276)
+++|.++.+...-.+... ...+.+++||+.++.++ |..+|+.+|.++.+ ++++... ...+ +-+
T Consensus 268 ~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~--~~~~---~~~ 341 (662)
T 3azo_A 268 HRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGE-LVDAAGP--WTEW---AAT 341 (662)
T ss_dssp EEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTE-EEECCSS--CCEE---EEE
T ss_pred EEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCc-EEEecCC--CCeE---EEE
Confidence 999987766543222210 12344567888888765 78889999998876 3444332 1222 233
Q ss_pred -EEECCEEEEEeCCCCC---eEEEEeCCCCcEE
Q 023864 242 -EFIKGEVWANVWQVWP---CIPYAYLQAFGSS 270 (276)
Q Consensus 242 -E~idG~lyANvw~s~d---~I~vIDp~T~~v~ 270 (276)
...++.++...... + .|.++|+++++..
T Consensus 342 ~s~~~~~~~~~~~~~-~~~~~i~~~d~~~g~~~ 373 (662)
T 3azo_A 342 LTVSGTRAVGVAASP-RTAYEVVELDTVTGRAR 373 (662)
T ss_dssp EEEETTEEEEEEEET-TEEEEEEEEETTTCCEE
T ss_pred EecCCCEEEEEEcCC-CCCCEEEEEECCCCceE
Confidence 45566655444333 3 7999999987754
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0049 Score=55.38 Aligned_cols=151 Identities=8% Similarity=-0.065 Sum_probs=92.9
Q ss_pred EEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEE---------------------
Q 023864 109 GLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVT--------------------- 166 (276)
Q Consensus 109 GL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlT--------------------- 166 (276)
-+.+.+++. +..+++ ++..|+.||..+++.+.....+.... .+.+..+.++++.
T Consensus 63 ~~~~~~~~~~~~~~~~--~d~~v~iWd~~~~~~~~~~~~~~~v~--~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 138 (355)
T 3vu4_A 63 KVRMLHRTNYVAFVTG--VKEVVHIWDDVKKQDVSRIKVDAPVK--DLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR 138 (355)
T ss_dssp EEEECTTSSEEEEECS--STTEEEEEETTTTEEEEEEECSSCEE--EEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE
T ss_pred EEEEcCCCCEEEEEEC--CccEEEEEECCCCcEEEEEECCCceE--EEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc
Confidence 455655544 444455 56799999999999888877665432 4444444444332
Q ss_pred -----------------eeCCEEEEEeCCCCc---------------E-EEEEecCCC--CeeEEeeCCCEEEEECCCce
Q 023864 167 -----------------WLQKTGFIYDQNNLN---------------K-LEEFTHQMK--DGWGLATDGKVLFGSDGSSM 211 (276)
Q Consensus 167 -----------------wk~~~v~V~D~~tlk---------------~-i~~~~~~~~--EGWGLT~Dg~~L~vSDGS~~ 211 (276)
-.++.+.+||..+.+ + +.++.-... ....+++||+.|.....+.+
T Consensus 139 ~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~ 218 (355)
T 3vu4_A 139 FGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGT 218 (355)
T ss_dssp EEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCS
T ss_pred CCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCC
Confidence 223445555555433 0 233321111 23346789998888766777
Q ss_pred -EEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCCCCCeEEEEeCCCC
Q 023864 212 -LYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQVWPCIPYAYLQAF 267 (276)
Q Consensus 212 -L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~s~d~I~vIDp~T~ 267 (276)
|.++|.++++.+.++.-+... ..++.+.+. ||...|..-.+ ..|.+-|.+++
T Consensus 219 ~v~iwd~~~~~~~~~~~~g~h~---~~v~~~~~s~~~~~l~s~s~d-~~v~iw~~~~~ 272 (355)
T 3vu4_A 219 IIRVFKTEDGVLVREFRRGLDR---ADVVDMKWSTDGSKLAVVSDK-WTLHVFEIFND 272 (355)
T ss_dssp EEEEEETTTCCEEEEEECTTCC---SCEEEEEECTTSCEEEEEETT-CEEEEEESSCC
T ss_pred EEEEEECCCCcEEEEEEcCCCC---CcEEEEEECCCCCEEEEEECC-CEEEEEEccCC
Confidence 999999999998877632111 245666776 57767666566 88999898764
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0016 Score=63.74 Aligned_cols=164 Identities=9% Similarity=-0.015 Sum_probs=108.1
Q ss_pred EEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeec--CCCceEEEEEEeCC---EEEEEEeeC
Q 023864 95 VVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM--EGSYFGEGLTLLGE---KLFQVTWLQ 169 (276)
Q Consensus 95 Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l--~~~~FgEGit~~g~---~LyqlTwk~ 169 (276)
.+.++.. ...-+..+.|++|+.++.+++ .+..|+.||............ +....-..+++..+ .+.+..-.+
T Consensus 464 ~~~~~~~-h~~~v~~~~~s~~~~~l~s~s--~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d 540 (694)
T 3dm0_A 464 STRRFVG-HTKDVLSVAFSLDNRQIVSAS--RDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWD 540 (694)
T ss_dssp EEEEEEC-CSSCEEEEEECTTSSCEEEEE--TTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETT
T ss_pred ceeEEeC-CCCCEEEEEEeCCCCEEEEEe--CCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCC
Confidence 4445532 234467999999988777777 678999999876543322211 12233455666542 355556678
Q ss_pred CEEEEEeCCCCcEEEEEecCCC--CeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CC
Q 023864 170 KTGFIYDQNNLNKLEEFTHQMK--DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG 246 (276)
Q Consensus 170 ~~v~V~D~~tlk~i~~~~~~~~--EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG 246 (276)
+.+.+||..+.+.+.++.-... ....+++||+.|.....+..|.++|..+.+.+..+... . .++-+.+. ++
T Consensus 541 ~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~---~---~v~~~~~sp~~ 614 (694)
T 3dm0_A 541 KTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN---S---VIHALCFSPNR 614 (694)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS---S---CEEEEEECSSS
T ss_pred CeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC---C---cEEEEEEcCCC
Confidence 9999999999998888853211 23346789998888777889999999999876554322 1 34455565 44
Q ss_pred EEEEEeCCCCCeEEEEeCCCCcE
Q 023864 247 EVWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 247 ~lyANvw~s~d~I~vIDp~T~~v 269 (276)
++.+.. .. +.|.+.|.++++.
T Consensus 615 ~~l~~~-~~-~~i~iwd~~~~~~ 635 (694)
T 3dm0_A 615 YWLCAA-TE-HGIKIWDLESKSI 635 (694)
T ss_dssp SEEEEE-ET-TEEEEEETTTTEE
T ss_pred cEEEEE-cC-CCEEEEECCCCCC
Confidence 444433 45 7799999998554
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0057 Score=51.88 Aligned_cols=125 Identities=9% Similarity=0.049 Sum_probs=84.9
Q ss_pred EEEEEEe-cCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEE
Q 023864 94 QVVNEFP-HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTG 172 (276)
Q Consensus 94 ~Vv~~~P-hd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v 172 (276)
++++.+. |........+.|+++|+++.+++ .+..|+.||+++++.+....-... ....+...+..+ ...-.++.+
T Consensus 56 ~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs--~Dg~v~iw~~~~~~~~~~~~~h~~-~~~~~~~~~~~l-~s~~~~~~~ 131 (318)
T 4ggc_A 56 DILQLLQMEQPGEYISSVAWIKEGNYLAVGT--SSAEVQLWDVQQQKRLRNMTSHSA-RVGSLSWNSYIL-SSGSRSGHI 131 (318)
T ss_dssp CEEEEEECCSTTCCEEEEEECTTSSEEEEEE--TTSEEEEEETTTTEEEEEEECCSS-CEEEEEEETTEE-EEEETTSEE
T ss_pred CEEEEEEecCCCCeEEEEEECCCCCEEEEEE--CCCcEEEeecCCceeEEEecCccc-eEEEeecCCCEE-EEEecCCce
Confidence 4555554 44566788999999998877766 678999999999998887654433 233455555544 445566777
Q ss_pred EEEeCCCCc-EEEEEecCCC--CeeEEeeCCCEEEEECCCceEEEEcCCCCcE
Q 023864 173 FIYDQNNLN-KLEEFTHQMK--DGWGLATDGKVLFGSDGSSMLYQIDPQTLKV 222 (276)
Q Consensus 173 ~V~D~~tlk-~i~~~~~~~~--EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~v 222 (276)
.+++..+.. .+.++.-... ......++|+.|+.......|.++|.++.+.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 184 (318)
T 4ggc_A 132 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 184 (318)
T ss_dssp EEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTT
T ss_pred EeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcc
Confidence 777776554 4455442211 2223557888888877788999999988654
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00022 Score=67.24 Aligned_cols=149 Identities=11% Similarity=-0.023 Sum_probs=94.0
Q ss_pred EEEEecCCCCCceEEEEecCCEEEE----EcCCCCCCeEEEEeCCCC--------cEEEEeecC--CCceEEEEEEeC--
Q 023864 96 VNEFPHDPRAFTQGLLYAENDTLFE----STGLYGRSSVRRVALETG--------KVEAINQME--GSYFGEGLTLLG-- 159 (276)
Q Consensus 96 v~~~Phd~~aFTQGL~~~~dg~Lye----StG~yg~S~I~~iDl~tg--------kv~~~~~l~--~~~FgEGit~~g-- 159 (276)
..+++|+ .-...+.|++||+++. +++ .+..|++||++++ +.+....+- ..---.++++..
T Consensus 86 ~~~~~~~--~~v~~l~~spdg~~lav~~~sgs--~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~ 161 (434)
T 2oit_A 86 GLLVPMK--FPIHHLALSCDNLTLSACMMSSE--YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTV 161 (434)
T ss_dssp CEEECCS--SCEEEEEECTTSCEEEEEEEETT--TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSC
T ss_pred cccccCC--CcccEEEEcCCCCEEEEEEeccC--CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCC
Confidence 3456663 3457999999987554 555 7889999998765 222222221 122345667653
Q ss_pred CEEEEEEeeCCEEEEEeCCCCcEEEEEe-cC-CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeC---CEe
Q 023864 160 EKLFQVTWLQKTGFIYDQNNLNKLEEFT-HQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYK---GRE 234 (276)
Q Consensus 160 ~~LyqlTwk~~~v~V~D~~tlk~i~~~~-~~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~---g~p 234 (276)
+.++...-.++++.+||..+.+.+.... +. .......++||+.|++...+.+|.++|+. ++..+.+..... +++
T Consensus 162 ~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~ 240 (434)
T 2oit_A 162 PSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHP 240 (434)
T ss_dssp TTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSC
T ss_pred CCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCc
Confidence 5677777789999999999886554332 22 11233457899999998888899999998 666666654321 111
Q ss_pred eeeeeeeEEECCEEEE
Q 023864 235 VRNLNELEFIKGEVWA 250 (276)
Q Consensus 235 v~~lNELE~idG~lyA 250 (276)
....-+.|.....|+
T Consensus 241 -~~v~~v~w~~~~~~l 255 (434)
T 2oit_A 241 -VRVLDVLWIGTYVFA 255 (434)
T ss_dssp -EEEEEEEEEETTEEE
T ss_pred -eeEEEEEEecCceEE
Confidence 144556676554444
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0022 Score=57.61 Aligned_cols=118 Identities=10% Similarity=-0.002 Sum_probs=81.6
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEE
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKL 183 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i 183 (276)
...+..+.|++||+++.+ | .++.+++||.++++.......+. .....+...++.+..+.-.++++.+||..+.+.+
T Consensus 19 ~~~V~~v~fs~dg~~la~-g--~~~~~~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~ 94 (355)
T 3vu4_A 19 SNPVTDYEFNQDQSCLIL-S--TLKSFEIYNVHPVAHIMSQEMRH-LSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDV 94 (355)
T ss_dssp CCCCCEEEECTTSSEEEE-E--CSSEEEEEEETTEEEEEEEECSC-CCEEEECTTSSEEEEECSSTTEEEEEETTTTEEE
T ss_pred CCceEEEEECCCCCEEEE-E--cCCEEEEEecCCcceeeeeecCC-eEEEEEcCCCCEEEEEECCccEEEEEECCCCcEE
Confidence 344569999999987764 4 34568999999988766655542 1111222234566666667789999999999999
Q ss_pred EEEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCC-cEEEEEE
Q 023864 184 EEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTL-KVIRKDI 227 (276)
Q Consensus 184 ~~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~-~vi~~I~ 227 (276)
.++.++ .+-.++..+.+.++++. .++|+++|..+. +.+.++.
T Consensus 95 ~~~~~~-~~v~~v~~~~~~~~~~~-~~~i~i~d~~~~~~~~~~~~ 137 (355)
T 3vu4_A 95 SRIKVD-APVKDLFLSREFIVVSY-GDVISVFKFGNPWKRITDDI 137 (355)
T ss_dssp EEEECS-SCEEEEEECSSEEEEEE-TTEEEEEESSTTCCBSSCCE
T ss_pred EEEECC-CceEEEEEcCCEEEEEE-cCEEEEEECCCCceeeEEec
Confidence 999876 35556666666666642 467999999887 5554443
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0026 Score=56.18 Aligned_cols=153 Identities=14% Similarity=0.165 Sum_probs=101.9
Q ss_pred EEEEecCCEEEEEcCCCC---CCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEee-----CCEEEEEeCCCC
Q 023864 109 GLLYAENDTLFESTGLYG---RSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL-----QKTGFIYDQNNL 180 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg---~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk-----~~~v~V~D~~tl 180 (276)
++... +++||.-.|..+ .+.+.+||+++++-....++|...++-+++..+++||++-=. .+.+.+||+.+.
T Consensus 116 ~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 194 (308)
T 1zgk_A 116 GVGVI-DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERN 194 (308)
T ss_dssp EEEEE-TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred EEEEE-CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCC
Confidence 55555 589998766433 367999999999877666777666666778889999998532 467999999876
Q ss_pred cE--EEEEecCCCCeeEEeeCCCEEEEECC------CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEe
Q 023864 181 NK--LEEFTHQMKDGWGLATDGKVLFGSDG------SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANV 252 (276)
Q Consensus 181 k~--i~~~~~~~~EGWGLT~Dg~~L~vSDG------S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANv 252 (276)
+- +...+.+ ..+-+++..++.||+--| .+.++++|+++.+-...-... ..+. . --+...+|+||+-=
T Consensus 195 ~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p-~~r~--~-~~~~~~~~~i~v~G 269 (308)
T 1zgk_A 195 EWRMITAMNTI-RSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMK-HRRS--A-LGITVHQGRIYVLG 269 (308)
T ss_dssp EEEECCCCSSC-CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCS-SCCB--S-CEEEEETTEEEEEC
T ss_pred eEeeCCCCCCc-cccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCC-CCcc--c-eEEEEECCEEEEEc
Confidence 54 3333333 355566666777888655 478999999998654321111 1111 1 12345688888643
Q ss_pred C-----CCCCeEEEEeCCCCc
Q 023864 253 W-----QVWPCIPYAYLQAFG 268 (276)
Q Consensus 253 w-----~s~d~I~vIDp~T~~ 268 (276)
. .. +.|.+.|+++++
T Consensus 270 G~~~~~~~-~~v~~yd~~~~~ 289 (308)
T 1zgk_A 270 GYDGHTFL-DSVECYDPDTDT 289 (308)
T ss_dssp CBCSSCBC-CEEEEEETTTTE
T ss_pred CcCCCccc-ceEEEEcCCCCE
Confidence 2 24 789999999865
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0006 Score=62.78 Aligned_cols=154 Identities=13% Similarity=0.148 Sum_probs=100.7
Q ss_pred CCCceEEEEec-CCEEEEEcCCCCCCeEEEEeCCCC---cEEEEeecCCCceEEEEEEe--CCEEEEEEeeCCEEEEEeC
Q 023864 104 RAFTQGLLYAE-NDTLFESTGLYGRSSVRRVALETG---KVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQ 177 (276)
Q Consensus 104 ~aFTQGL~~~~-dg~LyeStG~yg~S~I~~iDl~tg---kv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~~~v~V~D~ 177 (276)
..-...+.|++ ++.++.+++ ++..|++||+.++ +......-... -...+++. +..+++..-.++.+.+||.
T Consensus 231 ~~~v~~v~~~p~~~~~l~s~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~-~v~~i~~~p~~~~~l~tg~~dg~v~vwd~ 307 (430)
T 2xyi_A 231 TAVVEDVAWHLLHESLFGSVA--DDQKLMIWDTRNNNTSKPSHTVDAHTA-EVNCLSFNPYSEFILATGSADKTVALWDL 307 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEE--TTSEEEEEETTCSCSSSCSEEEECCSS-CEEEEEECSSCTTEEEEEETTSEEEEEET
T ss_pred CCCEeeeEEeCCCCCEEEEEe--CCCeEEEEECCCCCCCcceeEeecCCC-CeEEEEeCCCCCCEEEEEeCCCeEEEEeC
Confidence 44567999998 467777776 7899999999987 34444332221 12345554 4458888889999999999
Q ss_pred CCC-cEEEEEecCCCCeeE--EeeCCCEEEEEC-CCceEEEEcCCCC--------------cEEEEEEeeeCCEeeeeee
Q 023864 178 NNL-NKLEEFTHQMKDGWG--LATDGKVLFGSD-GSSMLYQIDPQTL--------------KVIRKDIVRYKGREVRNLN 239 (276)
Q Consensus 178 ~tl-k~i~~~~~~~~EGWG--LT~Dg~~L~vSD-GS~~L~viDp~t~--------------~vi~~I~V~~~g~pv~~lN 239 (276)
.+. +.+.++......-+. ++++++.++++. +.+.|.++|..+. +.+.... ++ -..++
T Consensus 308 ~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----~h-~~~v~ 382 (430)
T 2xyi_A 308 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG----GH-TAKIS 382 (430)
T ss_dssp TCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECC----CC-SSCEE
T ss_pred CCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcC----CC-CCCce
Confidence 884 567777633123333 567888766655 5789999998773 2222211 11 12456
Q ss_pred eeEEE-CCE-EEEEeCCCCCeEEEEeCCC
Q 023864 240 ELEFI-KGE-VWANVWQVWPCIPYAYLQA 266 (276)
Q Consensus 240 ELE~i-dG~-lyANvw~s~d~I~vIDp~T 266 (276)
.+.|. +|. ++|..-.+ +.|.+-|+.+
T Consensus 383 ~~~~~p~~~~~l~s~s~d-g~i~iw~~~~ 410 (430)
T 2xyi_A 383 DFSWNPNEPWIICSVSED-NIMQVWQMAE 410 (430)
T ss_dssp EEEECSSSTTEEEEEETT-SEEEEEEECH
T ss_pred EEEECCCCCCEEEEEECC-CCEEEeEccc
Confidence 67776 444 77777667 8888877654
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00063 Score=66.62 Aligned_cols=121 Identities=13% Similarity=0.152 Sum_probs=88.5
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEE
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGF 173 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~ 173 (276)
+++.++.. ....+..+.|++||.++.|++ .+..|+.||+.+++.+....... .-..+++..+..+.+.-.++.+.
T Consensus 552 ~~~~~~~~-h~~~v~~v~~spdg~~l~sg~--~Dg~i~iwd~~~~~~~~~~~~~~--~v~~~~~sp~~~~l~~~~~~~i~ 626 (694)
T 3dm0_A 552 KLRSTLAG-HTGYVSTVAVSPDGSLCASGG--KDGVVLLWDLAEGKKLYSLEANS--VIHALCFSPNRYWLCAATEHGIK 626 (694)
T ss_dssp CEEEEECC-CSSCEEEEEECTTSSEEEEEE--TTSBCEEEETTTTEEEECCBCSS--CEEEEEECSSSSEEEEEETTEEE
T ss_pred cEEEEEcC-CCCCEEEEEEeCCCCEEEEEe--CCCeEEEEECCCCceEEEecCCC--cEEEEEEcCCCcEEEEEcCCCEE
Confidence 34555542 355678999999999888877 78899999999999876654443 34567777666666677788999
Q ss_pred EEeCCCCcEEEEEecCCC---------------------CeeEEeeCCCEEEEECCCceEEEEcCCC
Q 023864 174 IYDQNNLNKLEEFTHQMK---------------------DGWGLATDGKVLFGSDGSSMLYQIDPQT 219 (276)
Q Consensus 174 V~D~~tlk~i~~~~~~~~---------------------EGWGLT~Dg~~L~vSDGS~~L~viDp~t 219 (276)
+||..+.+.+.++..... -...+++||+.|+....+..|.++|...
T Consensus 627 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 627 IWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp EEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 999999999888753210 1133568999999877788899998754
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0045 Score=57.83 Aligned_cols=157 Identities=10% Similarity=0.098 Sum_probs=97.7
Q ss_pred EEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEEEEEeeCCEEE
Q 023864 95 VVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGF 173 (276)
Q Consensus 95 Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~LyqlTwk~~~v~ 173 (276)
.++.++- ...-..++.|+||+.++.+++ .+..|+.||..+.++.....-... ..++++.. ++.......++.+.
T Consensus 295 ~~~~~~~-h~~~v~~~~~~~~~~~l~t~~--~d~~i~~w~~~~~~~~~~~~~~~~--v~~~~~s~~g~~l~~~~~dg~v~ 369 (577)
T 2ymu_A 295 LLQTLTG-HSSSVWGVAFSPDGQTIASAS--DDKTVKLWNRNGQHLQTLTGHSSS--VWGVAFSPDGQTIASASDDKTVK 369 (577)
T ss_dssp EEEEECC-CSSCEEEEEECTTSSEEEEEE--TTSCEEEEETTSCEEEEECCCSSC--EEEEEECTTSSEEEEEETTSEEE
T ss_pred EEEEEec-CCCCeEEEEECCCCCEEEEEe--CCCeEEEEeCCCCeeEEEeCCCCC--EEEEEECCCCCEEEEEeCCCEEE
Confidence 3445442 244557999999988777666 677899999987765332222223 23566653 45556667889999
Q ss_pred EEeCCCCcEEEEEecCC--CCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEE
Q 023864 174 IYDQNNLNKLEEFTHQM--KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWA 250 (276)
Q Consensus 174 V~D~~tlk~i~~~~~~~--~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyA 250 (276)
++|. +.+.+.++.-.. -.+..+++||+.|........|.++|. +.+.++++.-.. . .++.+.+. |++..|
T Consensus 370 ~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~--~---~v~~~~~s~d~~~l~ 442 (577)
T 2ymu_A 370 LWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS--S---SVWGVAFSPDDQTIA 442 (577)
T ss_dssp EEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCS--S---CEEEEEECTTSSEEE
T ss_pred EEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCC--C---CeEEEEECCCCCEEE
Confidence 9995 556777775321 134557889999988777788999994 566665544321 2 23334444 444444
Q ss_pred EeCCCCCeEEEEeC
Q 023864 251 NVWQVWPCIPYAYL 264 (276)
Q Consensus 251 Nvw~s~d~I~vIDp 264 (276)
..-.. ..|.+-|.
T Consensus 443 ~~~~d-~~v~~w~~ 455 (577)
T 2ymu_A 443 SASDD-KTVKLWNR 455 (577)
T ss_dssp EEETT-SEEEEEET
T ss_pred EEcCC-CEEEEEEC
Confidence 44344 55666664
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0026 Score=62.91 Aligned_cols=77 Identities=19% Similarity=0.221 Sum_probs=61.3
Q ss_pred CCEEEEEeCCCCcEEEEEecCCCCeeE--EeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeC--CEeeeeeeeeEE-
Q 023864 169 QKTGFIYDQNNLNKLEEFTHQMKDGWG--LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYK--GREVRNLNELEF- 243 (276)
Q Consensus 169 ~~~v~V~D~~tlk~i~~~~~~~~EGWG--LT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~--g~pv~~lNELE~- 243 (276)
.+.+..+|++|.+++-+++.+ ...|+ ++..|..+|+.+.+..|+.+|.+|++++-+..+... +.|+. |
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~------y~ 537 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPIT------WE 537 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE------EE
T ss_pred cceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceE------EE
Confidence 478899999999999998875 23444 777888999988889999999999999998888642 23433 4
Q ss_pred ECCEEEEEe
Q 023864 244 IKGEVWANV 252 (276)
Q Consensus 244 idG~lyANv 252 (276)
.||++|+.+
T Consensus 538 ~~G~qYv~~ 546 (582)
T 1flg_A 538 QDGEQYLGV 546 (582)
T ss_dssp ETTEEEEEE
T ss_pred ECCEEEEEE
Confidence 699988775
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00091 Score=61.08 Aligned_cols=122 Identities=11% Similarity=0.078 Sum_probs=85.4
Q ss_pred CCCceEEEEecCC-EEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEe-eCCEEEEEeCCCCc
Q 023864 104 RAFTQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW-LQKTGFIYDQNNLN 181 (276)
Q Consensus 104 ~aFTQGL~~~~dg-~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTw-k~~~v~V~D~~tlk 181 (276)
...+..+.|++++ .++.++|.-.+..|+.||+.+|+..............-....++.++...- .++.+.+||..+.+
T Consensus 276 ~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~ 355 (420)
T 4gga_A 276 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA 355 (420)
T ss_dssp SSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC
T ss_pred CCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc
Confidence 4556788998864 455444323567899999999999888877665443333334567776664 67999999999999
Q ss_pred EEEEEecCCC--CeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEE
Q 023864 182 KLEEFTHQMK--DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRK 225 (276)
Q Consensus 182 ~i~~~~~~~~--EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~ 225 (276)
++.++.--.. -...+++||+.|+....+.+|.++|..+....++
T Consensus 356 ~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~ 401 (420)
T 4gga_A 356 KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARR 401 (420)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC--
T ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccch
Confidence 9999862111 2334678999888766678899999876654433
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0032 Score=59.66 Aligned_cols=150 Identities=15% Similarity=0.160 Sum_probs=97.3
Q ss_pred EEEEcCCCCCCeEEEE--eCCCCcEEEEe----ecC---CCceEEEEEE--e--CCEEEE-EEeeCCEEEEEeC------
Q 023864 118 LFESTGLYGRSSVRRV--ALETGKVEAIN----QME---GSYFGEGLTL--L--GEKLFQ-VTWLQKTGFIYDQ------ 177 (276)
Q Consensus 118 LyeStG~yg~S~I~~i--Dl~tgkv~~~~----~l~---~~~FgEGit~--~--g~~Lyq-lTwk~~~v~V~D~------ 177 (276)
+|.|.-.-|.++|+.| |++++++..-. +++ ..++ |+++ . .+++|+ ++-+++.+..|+.
T Consensus 89 a~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~py--Glcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g 166 (355)
T 3amr_A 89 AAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVY--GFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNG 166 (355)
T ss_dssp EEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCC--CEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTS
T ss_pred EEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCee--EEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCC
Confidence 4665541228999998 66788753332 222 3444 6777 3 244433 3556688888776
Q ss_pred -CCCcEEEEEecC-CCCeeEEeeCCCEEEEECCCceEEEEc--CCC---CcEEEEEEeeeCCEeeeeeeeeEEE-C----
Q 023864 178 -NNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQID--PQT---LKVIRKDIVRYKGREVRNLNELEFI-K---- 245 (276)
Q Consensus 178 -~tlk~i~~~~~~-~~EGWGLT~Dg~~L~vSDGS~~L~viD--p~t---~~vi~~I~V~~~g~pv~~lNELE~i-d---- 245 (276)
.+.+++++|+.+ .+||+.+.+..++||+++-..-|+.+| |++ .+++..+.. +.-...+.-|.++ .
T Consensus 167 ~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~---g~l~aDvEGLai~~~~~g~ 243 (355)
T 3amr_A 167 YISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG---RHLTRDIEGLTIYYAADGK 243 (355)
T ss_dssp CEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS---SSBCSCEEEEEEEECGGGC
T ss_pred cccceEEEEecCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecC---CccccCcceEEEEecCCCC
Confidence 355778899876 678888988899999999777899999 444 555544322 2222133344443 2
Q ss_pred CEEEEEeCCCCCeEEEEeCC-CCcEEEEEE
Q 023864 246 GEVWANVWQVWPCIPYAYLQ-AFGSSLVYV 274 (276)
Q Consensus 246 G~lyANvw~s~d~I~vIDp~-T~~v~l~~~ 274 (276)
|+|+|.+=.. |...++|.+ +.+ .++.+
T Consensus 244 gyLivSsQG~-~s~~Vydr~~~~~-~vg~f 271 (355)
T 3amr_A 244 GYLMASSQGN-SSYAIYDRQGKNK-YVADF 271 (355)
T ss_dssp EEEEEEEGGG-TEEEEEESSTTCC-EEEEE
T ss_pred EEEEEEcCCC-CEEEEEECCCCCc-EEEEE
Confidence 5899999777 999999997 544 44543
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00076 Score=64.32 Aligned_cols=146 Identities=14% Similarity=0.184 Sum_probs=87.8
Q ss_pred EEEEecCC--EEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeC---CEEEEEeCCCCcEE
Q 023864 109 GLLYAEND--TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ---KTGFIYDQNNLNKL 183 (276)
Q Consensus 109 GL~~~~dg--~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~---~~v~V~D~~tlk~i 183 (276)
...+++|| .+|.+.. .+.+..||+++|+......-+. +.--+..+|..|+...... ..++++|.++.+..
T Consensus 114 ~~~~s~dg~~~~~~s~~---~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~ 188 (582)
T 3o4h_A 114 ILSGVDTGEAVVFTGAT---EDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR 188 (582)
T ss_dssp EEEEEECSSCEEEEEEC---SSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE
T ss_pred eeeeCCCCCeEEEEecC---CCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce
Confidence 45666665 4565433 3445589999998765544443 4445667788888666652 56999999887754
Q ss_pred EEEecCC--CCeeEEeeCCCEEEEECCC--ceEEEEcCCCCcEEEEEEeeeCCEeeeeee--eeE---EE-CCEEEEEeC
Q 023864 184 EEFTHQM--KDGWGLATDGKVLFGSDGS--SMLYQIDPQTLKVIRKDIVRYKGREVRNLN--ELE---FI-KGEVWANVW 253 (276)
Q Consensus 184 ~~~~~~~--~EGWGLT~Dg~~L~vSDGS--~~L~viDp~t~~vi~~I~V~~~g~pv~~lN--ELE---~i-dG~lyANvw 253 (276)
++.-.. .....++|||+.|+.++.. .+|+++|+++.+.. + +......+..+. ++. |. ||++|+...
T Consensus 189 -~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~ 264 (582)
T 3o4h_A 189 -VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE--D-LELPSKDFSSYRPTAITWLGYLPDGRLAVVAR 264 (582)
T ss_dssp -EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE--E-CCCSCSHHHHHCCSEEEEEEECTTSCEEEEEE
T ss_pred -EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE--E-ccCCCcChhhhhhccccceeEcCCCcEEEEEE
Confidence 443210 1233478999999987744 49999999998876 2 222111111110 111 33 667776665
Q ss_pred CCCCeEEEEeC
Q 023864 254 QVWPCIPYAYL 264 (276)
Q Consensus 254 ~s~d~I~vIDp 264 (276)
.. ..+.+.+.
T Consensus 265 ~~-g~~~l~~~ 274 (582)
T 3o4h_A 265 RE-GRSAVFID 274 (582)
T ss_dssp ET-TEEEEEET
T ss_pred cC-CcEEEEEE
Confidence 55 55655554
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00031 Score=68.54 Aligned_cols=114 Identities=11% Similarity=0.061 Sum_probs=71.9
Q ss_pred ceEEEEecCCEEEEEcCC-CC---CCeEEEEeCCCCcEEEEeecCCC-------------------------ceEEEEEE
Q 023864 107 TQGLLYAENDTLFESTGL-YG---RSSVRRVALETGKVEAINQMEGS-------------------------YFGEGLTL 157 (276)
Q Consensus 107 TQGL~~~~dg~LyeStG~-yg---~S~I~~iDl~tgkv~~~~~l~~~-------------------------~FgEGit~ 157 (276)
...+.|+|||+.+.+++. -| ...|..||+++|+.......... ...-.+..
T Consensus 39 ~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Sp 118 (741)
T 2ecf_A 39 LMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSP 118 (741)
T ss_dssp CEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECT
T ss_pred CCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECC
Confidence 468999999874433331 12 34899999999987666543211 12122233
Q ss_pred eCCEEEEEEeeCCEEEEEeCCCCc--EEEEEecC--CCCeeEEeeCCCEEEE-ECCCceEEEEcCCCCcEEE
Q 023864 158 LGEKLFQVTWLQKTGFIYDQNNLN--KLEEFTHQ--MKDGWGLATDGKVLFG-SDGSSMLYQIDPQTLKVIR 224 (276)
Q Consensus 158 ~g~~LyqlTwk~~~v~V~D~~tlk--~i~~~~~~--~~EGWGLT~Dg~~L~v-SDGS~~L~viDp~t~~vi~ 224 (276)
++++|+.... +.++++|.++.+ .+.++... ......++|||++|.. +| ++|+++|.++.+..+
T Consensus 119 Dg~~l~~~~~--~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~--~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 119 DAQRLLFPLG--GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG--RNLWVIDLASGRQMQ 186 (741)
T ss_dssp TSSEEEEEET--TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET--TEEEEEETTTTEEEE
T ss_pred CCCEEEEEeC--CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC--CcEEEEecCCCCEEE
Confidence 4556666654 999999998872 22333221 1234458899997654 55 489999999987653
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00097 Score=61.34 Aligned_cols=169 Identities=16% Similarity=0.091 Sum_probs=106.2
Q ss_pred eeEEEEEEecCCCCCceEEEEecC-CEEEEEcCCCCCCeEEEEeCCC----------CcEEEEeecC-CCceEEEEEEeC
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAEN-DTLFESTGLYGRSSVRRVALET----------GKVEAINQME-GSYFGEGLTLLG 159 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~d-g~LyeStG~yg~S~I~~iDl~t----------gkv~~~~~l~-~~~FgEGit~~g 159 (276)
.++++..++|..... .+.|+++ +.++.+++ ....|+.||+.+ ++......-. ...+ ++++..
T Consensus 118 ~~~~~~~~~h~~~v~--~l~~~p~~~~~lat~~--~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~--~l~~~~ 191 (430)
T 2xyi_A 118 KIEIEIKINHEGEVN--RARYMPQNACVIATKT--PSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGY--GLSWNP 191 (430)
T ss_dssp CEEEEEEEEESSCCS--EEEEETTEEEEEEEEC--SSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCC--CEEECT
T ss_pred ceEEEEEEcCCCcEE--EEEECCCCCcEEEEEC--CCCcEEEEECCCcccccCccccCCCcEEecCCCCCeE--EEEeCC
Confidence 566788899965544 8999997 56776655 567899999986 3443333222 2223 456553
Q ss_pred --CEEEEEEeeCCEEEEEeCCCCcE-------EEEEe-cC-CCCeeEEeeCCCEEEEE-CCCceEEEEcCCCC---cEEE
Q 023864 160 --EKLFQVTWLQKTGFIYDQNNLNK-------LEEFT-HQ-MKDGWGLATDGKVLFGS-DGSSMLYQIDPQTL---KVIR 224 (276)
Q Consensus 160 --~~LyqlTwk~~~v~V~D~~tlk~-------i~~~~-~~-~~EGWGLT~Dg~~L~vS-DGS~~L~viDp~t~---~vi~ 224 (276)
..+++..-.++.+.+||..+.+. ...+. .. .-....+++++..++++ .+...|.++|..+. +.+.
T Consensus 192 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~ 271 (430)
T 2xyi_A 192 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSH 271 (430)
T ss_dssp TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSE
T ss_pred CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCccee
Confidence 33677777899999999987322 23332 11 11334456655555554 47899999999887 3444
Q ss_pred EEEeeeCCEeeeeeeeeEEEC-C-EEEEEeCCCCCeEEEEeCCCCcEEEE
Q 023864 225 KDIVRYKGREVRNLNELEFIK-G-EVWANVWQVWPCIPYAYLQAFGSSLV 272 (276)
Q Consensus 225 ~I~V~~~g~pv~~lNELE~id-G-~lyANvw~s~d~I~vIDp~T~~v~l~ 272 (276)
.+... .. .++-+.+.. | .++|..-.+ ..|.+.|..+.+..+.
T Consensus 272 ~~~~~--~~---~v~~i~~~p~~~~~l~tg~~d-g~v~vwd~~~~~~~~~ 315 (430)
T 2xyi_A 272 TVDAH--TA---EVNCLSFNPYSEFILATGSAD-KTVALWDLRNLKLKLH 315 (430)
T ss_dssp EEECC--SS---CEEEEEECSSCTTEEEEEETT-SEEEEEETTCTTSCSE
T ss_pred EeecC--CC---CeEEEEeCCCCCCEEEEEeCC-CeEEEEeCCCCCCCeE
Confidence 44322 12 345556653 4 477777677 8999999988554333
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0019 Score=64.04 Aligned_cols=157 Identities=10% Similarity=0.061 Sum_probs=93.5
Q ss_pred CceEEEEecCCE--EEE-EcCCCCCCeEEEEeCCCCcEEEEeecCCC-ceEEEEEEeCCEEEEEEee------------C
Q 023864 106 FTQGLLYAENDT--LFE-STGLYGRSSVRRVALETGKVEAINQMEGS-YFGEGLTLLGEKLFQVTWL------------Q 169 (276)
Q Consensus 106 FTQGL~~~~dg~--Lye-StG~yg~S~I~~iDl~tgkv~~~~~l~~~-~FgEGit~~g~~LyqlTwk------------~ 169 (276)
...|+.|+|||+ +|. +.+.-....|+++|++||+.+.. .++.. ..+-..+ +++.||..... .
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~ 207 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQ 207 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEEEESCCCEEE-TTTEEEEEESSCCC-------CCC
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCCceeccEEEe-CCCEEEEEEecCcccccccccCCC
Confidence 357889999986 332 33322347899999999997554 22221 2233455 67788888755 3
Q ss_pred CEEEEEeCCCCcEEEEEecCCCC-------eeEEeeCCCEEEEEC--C--CceEEEEcCCCCc-EEEEEEeeeCCEeeee
Q 023864 170 KTGFIYDQNNLNKLEEFTHQMKD-------GWGLATDGKVLFGSD--G--SSMLYQIDPQTLK-VIRKDIVRYKGREVRN 237 (276)
Q Consensus 170 ~~v~V~D~~tlk~i~~~~~~~~E-------GWGLT~Dg~~L~vSD--G--S~~L~viDp~t~~-vi~~I~V~~~g~pv~~ 237 (276)
.++++++..|-+...+.=+..++ +...++||++|+++- + ++.|+++|.++.+ ..+++....++.. .
T Consensus 208 ~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~--~ 285 (693)
T 3iuj_A 208 HKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADV--S 285 (693)
T ss_dssp CEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCE--E
T ss_pred cEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceE--E
Confidence 57999998876532211111111 334789999987733 2 3599999987763 2334444332211 1
Q ss_pred eeeeEEECCEEEEEeCCC--CCeEEEEeCCCCc
Q 023864 238 LNELEFIKGEVWANVWQV--WPCIPYAYLQAFG 268 (276)
Q Consensus 238 lNELE~idG~lyANvw~s--~d~I~vIDp~T~~ 268 (276)
. ....++++|+--... ...|.++|.++++
T Consensus 286 ~--~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~ 316 (693)
T 3iuj_A 286 L--VDNKGSTLYLLTNRDAPNRRLVTVDAANPG 316 (693)
T ss_dssp E--EEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred E--EeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence 1 234567777544332 1479999998864
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0027 Score=56.04 Aligned_cols=153 Identities=10% Similarity=0.040 Sum_probs=99.8
Q ss_pred EEEEecCCEEEEEcCCC-------CCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEe-----eCCEEEEEe
Q 023864 109 GLLYAENDTLFESTGLY-------GRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW-----LQKTGFIYD 176 (276)
Q Consensus 109 GL~~~~dg~LyeStG~y-------g~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTw-----k~~~v~V~D 176 (276)
+++.. +++||.-.|.. ..+.+.+||+.+++-....+++....+-+++..+++||++-= ..+.+.+||
T Consensus 65 ~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd 143 (308)
T 1zgk_A 65 AGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYE 143 (308)
T ss_dssp EEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEE
T ss_pred eEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEEC
Confidence 55555 58899876641 125799999999987666667755555677888999999832 236799999
Q ss_pred CCCCcE--EEEEecCCCCeeEEeeCCCEEEEECC------CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEE
Q 023864 177 QNNLNK--LEEFTHQMKDGWGLATDGKVLFGSDG------SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEV 248 (276)
Q Consensus 177 ~~tlk~--i~~~~~~~~EGWGLT~Dg~~L~vSDG------S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~l 248 (276)
+.+.+- +..++.+ ..+-+.+..++.||+--| .+.++.+|+++.+-...-.. ...+. ---+...+++|
T Consensus 144 ~~~~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~---~~~~~~~~~~i 218 (308)
T 1zgk_A 144 PERDEWHLVAPMLTR-RIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAM-NTIRS---GAGVCVLHNCI 218 (308)
T ss_dssp TTTTEEEECCCCSSC-CBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCC-SSCCB---SCEEEEETTEE
T ss_pred CCCCeEeECCCCCcc-ccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCC-CCccc---cceEEEECCEE
Confidence 987654 3333433 355566655778888544 46899999999866432111 11111 11234568888
Q ss_pred EEEeCC-----CCCeEEEEeCCCCc
Q 023864 249 WANVWQ-----VWPCIPYAYLQAFG 268 (276)
Q Consensus 249 yANvw~-----s~d~I~vIDp~T~~ 268 (276)
|+-=.. . +.+.+.|+++++
T Consensus 219 yv~GG~~~~~~~-~~v~~yd~~~~~ 242 (308)
T 1zgk_A 219 YAAGGYDGQDQL-NSVERYDVETET 242 (308)
T ss_dssp EEECCBCSSSBC-CCEEEEETTTTE
T ss_pred EEEeCCCCCCcc-ceEEEEeCCCCc
Confidence 864322 4 679999999864
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00041 Score=67.27 Aligned_cols=162 Identities=9% Similarity=-0.058 Sum_probs=92.1
Q ss_pred ceEEEEecCCEEEEEcCCCC-------CCeEEEEeCCCCcEEEEeecCCC---ceEEEEEEeCCEEEEEEeeCCEEEEEe
Q 023864 107 TQGLLYAENDTLFESTGLYG-------RSSVRRVALETGKVEAINQMEGS---YFGEGLTLLGEKLFQVTWLQKTGFIYD 176 (276)
Q Consensus 107 TQGL~~~~dg~LyeStG~yg-------~S~I~~iDl~tgkv~~~~~l~~~---~FgEGit~~g~~LyqlTwk~~~v~V~D 176 (276)
...+.|+|||+.+.++...+ ...|..||+++|+...-...... ...-.+..+|++|..+. ++.++++|
T Consensus 63 v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~--~~~i~~~~ 140 (723)
T 1xfd_A 63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF--ENNIYYCA 140 (723)
T ss_dssp CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE--TTEEEEES
T ss_pred cceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEE--CCeEEEEE
Confidence 56899999987333332111 37899999999986222111111 22222344566666655 37999999
Q ss_pred CCCCcEEEEEecCC-C-------------------CeeEEeeCCCEEEEEC--C--------------------------
Q 023864 177 QNNLNKLEEFTHQM-K-------------------DGWGLATDGKVLFGSD--G-------------------------- 208 (276)
Q Consensus 177 ~~tlk~i~~~~~~~-~-------------------EGWGLT~Dg~~L~vSD--G-------------------------- 208 (276)
.++.+.......+. . .+...+|||+.|+.+. +
T Consensus 141 ~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (723)
T 1xfd_A 141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK 220 (723)
T ss_dssp SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred CCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCC
Confidence 99877655443220 0 2455789999876632 2
Q ss_pred ------CceEEEEcCCCCcEEEEEEeeeCCE-eeeeeeeeEEE-CCEEEEEe---CCCCCeEEEEeCCCCcEE
Q 023864 209 ------SSMLYQIDPQTLKVIRKDIVRYKGR-EVRNLNELEFI-KGEVWANV---WQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 209 ------S~~L~viDp~t~~vi~~I~V~~~g~-pv~~lNELE~i-dG~lyANv---w~s~d~I~vIDp~T~~v~ 270 (276)
..+|+++|.++.+....+....... .-..+..+.|. ||++.+.. -..+..|.++|+++++..
T Consensus 221 ~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~ 293 (723)
T 1xfd_A 221 AGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT 293 (723)
T ss_dssp TTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE
T ss_pred CCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcce
Confidence 1278899988887544443221000 01133344454 67644222 112136888899998743
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.005 Score=58.71 Aligned_cols=159 Identities=10% Similarity=0.086 Sum_probs=109.3
Q ss_pred CceEEEEecCCEEEE-EcCC------------CCCCeEEEEeCCCC--cEEEEeecCC-----CceEEEEEEe-------
Q 023864 106 FTQGLLYAENDTLFE-STGL------------YGRSSVRRVALETG--KVEAINQMEG-----SYFGEGLTLL------- 158 (276)
Q Consensus 106 FTQGL~~~~dg~Lye-StG~------------yg~S~I~~iDl~tg--kv~~~~~l~~-----~~FgEGit~~------- 158 (276)
-+|++.+++.|+||+ =+|. .+.-+|..||+.|+ ++++++.+|+ .-|-..++++
T Consensus 88 sV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~ 167 (381)
T 3q6k_A 88 SIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGD 167 (381)
T ss_dssp CEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTT
T ss_pred EeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCC
Confidence 457889998899985 3453 34568999999999 9999999883 3355678888
Q ss_pred --CCEEEEEEeeCCEEEEEeCCCCcEEEEE------------ec-------C-CCCeeEEeeC----CCEEEEEC-CCce
Q 023864 159 --GEKLFQVTWLQKTGFIYDQNNLNKLEEF------------TH-------Q-MKDGWGLATD----GKVLFGSD-GSSM 211 (276)
Q Consensus 159 --g~~LyqlTwk~~~v~V~D~~tlk~i~~~------------~~-------~-~~EGWGLT~D----g~~L~vSD-GS~~ 211 (276)
+..+|+.+-...-+.|||.++.+--+-. .+ . .-.|.+|++| +++||-+- .|.+
T Consensus 168 c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ 247 (381)
T 3q6k_A 168 CSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIK 247 (381)
T ss_dssp SCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSE
T ss_pred CCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCc
Confidence 4689999988899999998876543222 11 1 2356678888 78998877 5668
Q ss_pred EEEEcCCC---CcEEEEE-EeeeCCEeeeeeeeeEEE--CCEEEEEeCCCCCeEEEEeCCC
Q 023864 212 LYQIDPQT---LKVIRKD-IVRYKGREVRNLNELEFI--KGEVWANVWQVWPCIPYAYLQA 266 (276)
Q Consensus 212 L~viDp~t---~~vi~~I-~V~~~g~pv~~lNELE~i--dG~lyANvw~s~d~I~vIDp~T 266 (276)
++-+..+- ......+ .+++.| +...--++.++ +|.||...-.. +.|.+.|+++
T Consensus 248 ly~V~T~~L~~~~~~~~v~~~G~kg-~~s~~~~~~~D~~~G~ly~~~~~~-~aI~~w~~~~ 306 (381)
T 3q6k_A 248 VYSVNTKELKQKGGKLNPELLGNRG-KYNDAIALAYDPKTKVIFFAEANT-KQVSCWNTQK 306 (381)
T ss_dssp EEEEEHHHHSSTTCCCCCEEEEECC-TTCCEEEEEECTTTCEEEEEESSS-SEEEEEETTS
T ss_pred EEEEEHHHhhCcchhhceEEeeecC-CCCCcceEEEeCCCCeEEEEeccC-CeEEEEeCCC
Confidence 99886221 1111111 223322 11223345564 58899998888 9999999986
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00045 Score=68.97 Aligned_cols=112 Identities=11% Similarity=0.010 Sum_probs=81.9
Q ss_pred EEeCCEEEEEEeeCCEEEEEeC-CCCcEEEEEecCCCC-----------eeEEee--CCCE----EEEECCCceEEEEcC
Q 023864 156 TLLGEKLFQVTWLQKTGFIYDQ-NNLNKLEEFTHQMKD-----------GWGLAT--DGKV----LFGSDGSSMLYQIDP 217 (276)
Q Consensus 156 t~~g~~LyqlTwk~~~v~V~D~-~tlk~i~~~~~~~~E-----------GWGLT~--Dg~~----L~vSDGS~~L~viDp 217 (276)
.+.++++|+.+..++.++.+|+ +|.+++-++..+... ..|++. ++.. +|+.....+|+-+|+
T Consensus 59 ~v~~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa 138 (599)
T 1w6s_A 59 LVVDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNA 138 (599)
T ss_dssp EEETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEET
T ss_pred EEECCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEEC
Confidence 4568999999976789999999 999999998754211 123444 5555 899887889999999
Q ss_pred CCCcEEEEEEeeeC--CEeeeeeeeeEEECCEEEEEeC-----CCCCeEEEEeCCCCcEE
Q 023864 218 QTLKVIRKDIVRYK--GREVRNLNELEFIKGEVWANVW-----QVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 218 ~t~~vi~~I~V~~~--g~pv~~lNELE~idG~lyANvw-----~s~d~I~vIDp~T~~v~ 270 (276)
+|++++=+..+... +..+ ..--.+.+|.||+... .. ..|..+|++||++.
T Consensus 139 ~TG~~~W~~~~~~~~~~~~~--~ssP~v~~g~V~vg~~g~e~g~~-g~v~A~D~~TG~~~ 195 (599)
T 1w6s_A 139 ETGETVWKVENSDIKVGSTL--TIAPYVVKDKVIIGSSGAELGVR-GYLTAYDVKTGEQV 195 (599)
T ss_dssp TTCCEEEEEECCCGGGTCBC--CSCCEEETTEEEECCBCGGGTCC-CEEEEEETTTCCEE
T ss_pred CCCCEEEeecCCCCCcccee--ecCCEEECCEEEEEecccccCCC-CeEEEEECCCCcEE
Confidence 99999877666431 1111 1112356899998775 35 79999999999875
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0039 Score=55.14 Aligned_cols=153 Identities=16% Similarity=0.100 Sum_probs=101.0
Q ss_pred EEEEecCCEEEEEcCCC--C---CCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEee------CCEEEEEeC
Q 023864 109 GLLYAENDTLFESTGLY--G---RSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL------QKTGFIYDQ 177 (276)
Q Consensus 109 GL~~~~dg~LyeStG~y--g---~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk------~~~v~V~D~ 177 (276)
++... +++||.-.|.. + .+.+.+||+++++-....++|...++-+++..+++||++-=. .+.+.+||+
T Consensus 104 ~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~ 182 (318)
T 2woz_A 104 GLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNP 182 (318)
T ss_dssp EEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEET
T ss_pred ceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcC
Confidence 55555 58999877742 1 267999999999877766788766777888899999998643 356999999
Q ss_pred CCCcE--EEEEecCCCCeeEEeeCCCEEEEECC------CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEE
Q 023864 178 NNLNK--LEEFTHQMKDGWGLATDGKVLFGSDG------SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVW 249 (276)
Q Consensus 178 ~tlk~--i~~~~~~~~EGWGLT~Dg~~L~vSDG------S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~ly 249 (276)
.+.+- +...+.+ ..+.+++.-++.||+--| .+.++++|+++.+-...-.. ...+.- --+...+|+||
T Consensus 183 ~~~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~---~~~~~~~~~i~ 257 (318)
T 2woz_A 183 KKGDWKDLAPMKTP-RSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEF-PQERSS---ISLVSLAGSLY 257 (318)
T ss_dssp TTTEEEEECCCSSC-CBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCC-SSCCBS---CEEEEETTEEE
T ss_pred CCCEEEECCCCCCC-cccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCC-CCcccc---eEEEEECCEEE
Confidence 87654 3333333 345565555667777544 36789999999875432111 111111 12446688888
Q ss_pred EEeC--------------CCCCeEEEEeCCCCc
Q 023864 250 ANVW--------------QVWPCIPYAYLQAFG 268 (276)
Q Consensus 250 ANvw--------------~s~d~I~vIDp~T~~ 268 (276)
+-=. .. +.|.+.|+++++
T Consensus 258 v~GG~~~~~~~~~~~~~~~~-~~v~~yd~~~~~ 289 (318)
T 2woz_A 258 AIGGFAMIQLESKEFAPTEV-NDIWKYEDDKKE 289 (318)
T ss_dssp EECCBCCBC----CCBCCBC-CCEEEEETTTTE
T ss_pred EECCeeccCCCCceecccee-eeEEEEeCCCCE
Confidence 6421 24 679999999864
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00039 Score=68.78 Aligned_cols=113 Identities=14% Similarity=0.091 Sum_probs=80.9
Q ss_pred EEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEecCCCC---------eeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEE
Q 023864 156 TLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKD---------GWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKD 226 (276)
Q Consensus 156 t~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~E---------GWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I 226 (276)
.+.++++|+.+..++ ++.+|++|.+++-++....+. ..|++.++..+|+.....+|+-+|++|++++=+.
T Consensus 65 ~v~~g~vyv~~~~~~-v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~ 143 (582)
T 1flg_A 65 IVSDGVIYVTASYSR-LFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKK 143 (582)
T ss_dssp EEETTEEEEEETTTE-EEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEE
T ss_pred EEECCEEEEEcCCCC-EEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCCEEEEEECCCCCEEeee
Confidence 467999999998555 999999999999999765221 1355667888999777789999999999998777
Q ss_pred EeeeCCEeeeeeeeeEEECC------EEEEEeC-----CCCCeEEEEeCCCCcEE
Q 023864 227 IVRYKGREVRNLNELEFIKG------EVWANVW-----QVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 227 ~V~~~g~pv~~lNELE~idG------~lyANvw-----~s~d~I~vIDp~T~~v~ 270 (276)
.+............-...++ .||+... .. ..|..+|++||++.
T Consensus 144 ~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~-g~v~alD~~tG~~~ 197 (582)
T 1flg_A 144 KFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVV-GRLFARDPDTGEEI 197 (582)
T ss_dssp ECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCB-CEEEEECTTTCCEE
T ss_pred cCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCC-CEEEEEECCCCCEE
Confidence 66531000000111123456 8988763 25 78999999998865
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0048 Score=60.86 Aligned_cols=158 Identities=10% Similarity=-0.008 Sum_probs=94.9
Q ss_pred eEEEEecCCE-EEEEcCCCC-------------CCeEEEEeCCCCcEE--EEeecCC-C--ceEEEEEEeCCEEEEEEee
Q 023864 108 QGLLYAENDT-LFESTGLYG-------------RSSVRRVALETGKVE--AINQMEG-S--YFGEGLTLLGEKLFQVTWL 168 (276)
Q Consensus 108 QGL~~~~dg~-LyeStG~yg-------------~S~I~~iDl~tgkv~--~~~~l~~-~--~FgEGit~~g~~LyqlTwk 168 (276)
.++.|+|||+ ||.++..-. ...|.++++.+++.. .....+. . .++-.++.+++.|+...+.
T Consensus 174 ~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~ 253 (710)
T 2xdw_A 174 SCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIRE 253 (710)
T ss_dssp CCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEEC
T ss_pred ceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEc
Confidence 5899999974 666554322 346999999998621 1112221 2 3344444456778777763
Q ss_pred ----CCEEEEEeCCC------Cc-EEEEEecC-CCCeeEEeeCCCEEEE-ECC---CceEEEEcCCCCcE--EEEEEeee
Q 023864 169 ----QKTGFIYDQNN------LN-KLEEFTHQ-MKDGWGLATDGKVLFG-SDG---SSMLYQIDPQTLKV--IRKDIVRY 230 (276)
Q Consensus 169 ----~~~v~V~D~~t------lk-~i~~~~~~-~~EGWGLT~Dg~~L~v-SDG---S~~L~viDp~t~~v--i~~I~V~~ 230 (276)
...++++|.++ .+ .+..+... ......+++||+.||+ ++. ..+|+.+|.++.+. .+.+.-..
T Consensus 254 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~ 333 (710)
T 2xdw_A 254 GCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH 333 (710)
T ss_dssp SSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC
T ss_pred cCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC
Confidence 56899999876 32 34555432 1233347899998876 552 34799999988742 23332222
Q ss_pred CCEeeeeeeeeEEE-CCEEEEEeCCC-CCeEEEEeCCCCc
Q 023864 231 KGREVRNLNELEFI-KGEVWANVWQV-WPCIPYAYLQAFG 268 (276)
Q Consensus 231 ~g~pv~~lNELE~i-dG~lyANvw~s-~d~I~vIDp~T~~ 268 (276)
+. ..++.+.+. ++++++..-.. ...|.++|+++|+
T Consensus 334 ~~---~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~ 370 (710)
T 2xdw_A 334 EK---DVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGA 370 (710)
T ss_dssp SS---CEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCC
T ss_pred CC---CeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCC
Confidence 11 234556677 67777654322 0368899998766
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0016 Score=59.96 Aligned_cols=162 Identities=10% Similarity=0.031 Sum_probs=95.6
Q ss_pred ceeeeEEEEEEecCCCCCceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEe-ecC-----CCceEEEEEEe---
Q 023864 89 SIYTIQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAIN-QME-----GSYFGEGLTLL--- 158 (276)
Q Consensus 89 ~~~t~~Vv~~~Phd~~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~-~l~-----~~~FgEGit~~--- 158 (276)
+-++++++.+-- ..+ .+|+|++||+ ||++.- ...|+++|.+ |+....+ .++ ..--..||+++
T Consensus 6 ~g~~~~~va~~l--~~P--~~i~~~pdG~~l~V~e~---~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf 77 (353)
T 2g8s_A 6 ATVNVEVLQDKL--DHP--WALAFLPDNHGMLITLR---GGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDF 77 (353)
T ss_dssp CCSEEEEEEEEE--SSE--EEEEECSTTCCEEEEET---TTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTH
T ss_pred CCcEEEEEECCC--CCc--EEEEEcCCCCEEEEEeC---CceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCC
Confidence 335667776621 123 4999999999 998643 3689999964 4432111 122 11123688987
Q ss_pred --CCEEEEEEee-------CCEEEEEeCCCC----cEEEEE----ec---C--CCCeeEEeeCCCEEEEECCC-------
Q 023864 159 --GEKLFQVTWL-------QKTGFIYDQNNL----NKLEEF----TH---Q--MKDGWGLATDGKVLFGSDGS------- 209 (276)
Q Consensus 159 --g~~LyqlTwk-------~~~v~V~D~~tl----k~i~~~----~~---~--~~EGWGLT~Dg~~L~vSDGS------- 209 (276)
+++||+.... .+++..++.+.- ...+.+ +. . .+.+..+.+|| .||++.|+
T Consensus 78 ~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~~ 156 (353)
T 2g8s_A 78 AQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPTA 156 (353)
T ss_dssp HHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGGG
T ss_pred CCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCcc
Confidence 6899999765 457887765421 222222 21 1 12345567888 89999764
Q ss_pred -------ceEEEEcCCCCc------------EEEEEEeeeCCEeeeeeeeeEEE--CCEEEEEeCCC--CCeEEEEeC
Q 023864 210 -------SMLYQIDPQTLK------------VIRKDIVRYKGREVRNLNELEFI--KGEVWANVWQV--WPCIPYAYL 264 (276)
Q Consensus 210 -------~~L~viDp~t~~------------vi~~I~V~~~g~pv~~lNELE~i--dG~lyANvw~s--~d~I~vIDp 264 (276)
.+|..||++.-- ....+.. -+.+++.|.+. +|+||+..-.. ++.|-+|.+
T Consensus 157 q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~-----G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~ 229 (353)
T 2g8s_A 157 QDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSY-----GIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQK 229 (353)
T ss_dssp GCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEE-----CCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCT
T ss_pred CCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEE-----cCcCccceEEECCCCCEEEEecCCCCCcEEeEecc
Confidence 278888876310 0001111 23478888888 58999766553 146776654
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00055 Score=70.77 Aligned_cols=150 Identities=10% Similarity=0.000 Sum_probs=94.2
Q ss_pred CceEEEEe-cCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEE-eCCEEEEEEeeCCEEE-EEeCCCCc
Q 023864 106 FTQGLLYA-ENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL-LGEKLFQVTWLQKTGF-IYDQNNLN 181 (276)
Q Consensus 106 FTQGL~~~-~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~-~g~~LyqlTwk~~~v~-V~D~~tlk 181 (276)
....+.|+ |||+ |..+. ...|..+|.++++......-+. .-..++++ ++++|+.+.. ++.++ ++|.++.+
T Consensus 297 ~v~~~~~S~pdG~~la~~~----~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~sdg~~l~~~s~-~~~l~~~~d~~~~~ 370 (1045)
T 1k32_A 297 SKFAEDFSPLDGDLIAFVS----RGQAFIQDVSGTYVLKVPEPLR-IRYVRRGGDTKVAFIHGTR-EGDFLGIYDYRTGK 370 (1045)
T ss_dssp GGGEEEEEECGGGCEEEEE----TTEEEEECTTSSBEEECSCCSC-EEEEEECSSSEEEEEEEET-TEEEEEEEETTTCC
T ss_pred ccceeeecCCCCCEEEEEE----cCEEEEEcCCCCceEEccCCCc-ceEEeeeEcCCCeEEEEEC-CCceEEEEECCCCC
Confidence 45789999 9986 44332 4689999999998654222122 11223333 3446666665 67888 89988765
Q ss_pred EEEEEe-cC-CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCE-E-EEEe----
Q 023864 182 KLEEFT-HQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGE-V-WANV---- 252 (276)
Q Consensus 182 ~i~~~~-~~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~-l-yANv---- 252 (276)
.. .+. .. ......+++||++|+.+.....|+++|+++.++........ . .+..+.|. ||+ | |+..
T Consensus 371 ~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~--~---~v~~~~~SpDG~~la~~~~~~~~ 444 (1045)
T 1k32_A 371 AE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSRE--A---MITDFTISDNSRFIAYGFPLKHG 444 (1045)
T ss_dssp EE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS--S---CCCCEEECTTSCEEEEEEEECSS
T ss_pred ce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCC--C---CccceEECCCCCeEEEEecCccc
Confidence 43 232 11 12345578999999887777899999999998765543221 1 22344565 664 3 3333
Q ss_pred ----CCCCCeEEEEeCCCCc
Q 023864 253 ----WQVWPCIPYAYLQAFG 268 (276)
Q Consensus 253 ----w~s~d~I~vIDp~T~~ 268 (276)
|.. ..|.++|.++++
T Consensus 445 ~~~~~~~-~~i~l~d~~~g~ 463 (1045)
T 1k32_A 445 ETDGYVM-QAIHVYDMEGRK 463 (1045)
T ss_dssp TTCSCCE-EEEEEEETTTTE
T ss_pred cccCCCC-CeEEEEECCCCc
Confidence 334 589999999866
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0028 Score=56.02 Aligned_cols=153 Identities=13% Similarity=0.032 Sum_probs=99.2
Q ss_pred EEEEecCCEEEEEcCC------CCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEee------CCEEEEEe
Q 023864 109 GLLYAENDTLFESTGL------YGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL------QKTGFIYD 176 (276)
Q Consensus 109 GL~~~~dg~LyeStG~------yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk------~~~v~V~D 176 (276)
++... +++||.-.|. ...+.+.+||+.+++-....++|...++-+++..+++||++-=. .+.+.+||
T Consensus 93 ~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd 171 (315)
T 4asc_A 93 GLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYD 171 (315)
T ss_dssp EEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEE
T ss_pred eEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEe
Confidence 55555 5899987772 12367999999999876666777766777788899999999755 36799999
Q ss_pred CCCCcE--EEEEecCCCCeeEEeeCCCEEEEECC------CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEE
Q 023864 177 QNNLNK--LEEFTHQMKDGWGLATDGKVLFGSDG------SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEV 248 (276)
Q Consensus 177 ~~tlk~--i~~~~~~~~EGWGLT~Dg~~L~vSDG------S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~l 248 (276)
+.+.+- +...+.+ ..+-+.+.-+..||+--| .+.++++|+++.+-...-.. ...+.-. -+...+|+|
T Consensus 172 ~~~~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~---~~~~~~~~l 246 (315)
T 4asc_A 172 PKKFEWKELAPMQTA-RSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAF-PQERSSL---SLVSLVGTL 246 (315)
T ss_dssp TTTTEEEECCCCSSC-CBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCC-SSCCBSC---EEEEETTEE
T ss_pred CCCCeEEECCCCCCc-hhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCC-CCcccce---eEEEECCEE
Confidence 987653 3333433 345555555667777543 35799999999865432111 1111111 233557777
Q ss_pred EEEeC--------------CCCCeEEEEeCCCCc
Q 023864 249 WANVW--------------QVWPCIPYAYLQAFG 268 (276)
Q Consensus 249 yANvw--------------~s~d~I~vIDp~T~~ 268 (276)
|+-=. .. +.|.+.||++++
T Consensus 247 ~v~GG~~~~~~~~~~~~~~~~-~~v~~yd~~~~~ 279 (315)
T 4asc_A 247 YAIGGFATLETESGELVPTEL-NDIWRYNEEEKK 279 (315)
T ss_dssp EEEEEEEEEECTTSCEEEEEE-EEEEEEETTTTE
T ss_pred EEECCccccCcCCcccccccc-CcEEEecCCCCh
Confidence 75321 13 568899999864
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0025 Score=53.81 Aligned_cols=124 Identities=6% Similarity=-0.058 Sum_probs=74.3
Q ss_pred EEEEEEecCCCCCceEEEEecC--CEEEEEcCCCCCCeEEEEeCCCCcEEEEeec------------CCCceEEEEEEe-
Q 023864 94 QVVNEFPHDPRAFTQGLLYAEN--DTLFESTGLYGRSSVRRVALETGKVEAINQM------------EGSYFGEGLTLL- 158 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~d--g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l------------~~~~FgEGit~~- 158 (276)
+.+.++.. .......+.|+++ +.++.+++ .+..|+.||+.+++.+....+ +...-...+++.
T Consensus 101 ~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 177 (351)
T 3f3f_A 101 NKLCTLND-SKGSLYSVKFAPAHLGLKLACLG--NDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCP 177 (351)
T ss_dssp EEEEEECC-CSSCEEEEEECCGGGCSEEEEEE--TTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECC
T ss_pred ceeeeecc-cCCceeEEEEcCCCCCcEEEEec--CCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEecc
Confidence 45666643 3455679999998 87777666 678999999998874332211 111111233443
Q ss_pred ---CCEEEEEEeeCCEEEEEeCCCCcE--EEEEecCCC--CeeEEeeCC----CEEEEECCCceEEEEcCCCC
Q 023864 159 ---GEKLFQVTWLQKTGFIYDQNNLNK--LEEFTHQMK--DGWGLATDG----KVLFGSDGSSMLYQIDPQTL 220 (276)
Q Consensus 159 ---g~~LyqlTwk~~~v~V~D~~tlk~--i~~~~~~~~--EGWGLT~Dg----~~L~vSDGS~~L~viDp~t~ 220 (276)
++.++.+.-.++.+.+++..+.+. +.++.-... ....+.+|| +.|+....+..|.++|..+.
T Consensus 178 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 178 SRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK 250 (351)
T ss_dssp CSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred CCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence 245555666667776677666654 344432111 233466787 55666656788999997764
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.006 Score=53.17 Aligned_cols=110 Identities=16% Similarity=0.068 Sum_probs=72.2
Q ss_pred ceEEEEecCCE-EEEEcCCC--CCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEee-------------
Q 023864 107 TQGLLYAENDT-LFESTGLY--GRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWL------------- 168 (276)
Q Consensus 107 TQGL~~~~dg~-LyeStG~y--g~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk------------- 168 (276)
...+.|+|||+ |+.....- +...|..+|+++|+.......+. ..++++. +++|+.....
T Consensus 61 ~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~---~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~ 137 (347)
T 2gop_A 61 ATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN---IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDV 137 (347)
T ss_dssp CEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE---EEEEEECTTSSEEEEEEECCCC---------C
T ss_pred CCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC---ccceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence 45789999985 44322211 45679999999998765555443 4456664 5677777643
Q ss_pred -------------CCEEEEEeCCCCcEEEEEecCCCCeeEEeeCCCEEEEECC---------CceEEEEcCCCCcE
Q 023864 169 -------------QKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDG---------SSMLYQIDPQTLKV 222 (276)
Q Consensus 169 -------------~~~v~V~D~~tlk~i~~~~~~~~EGWGLT~Dg~~L~vSDG---------S~~L~viDp~t~~v 222 (276)
...++++|.++.+.+..+..+......+++|| .+|+++. ...|+.+| +.+.
T Consensus 138 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~ 210 (347)
T 2gop_A 138 PAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKPRFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKE 210 (347)
T ss_dssp CCC---------CEEEEEEEETTTTEEEEEEEEETTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEE
T ss_pred ceeecCcccccCccceEEEEECCCCeEEeeecCCCcccccCCCCe-EEEEEecccccccccccccEEEeC--CCce
Confidence 36799999998876444432223566688999 7777642 34799999 5554
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00025 Score=62.65 Aligned_cols=154 Identities=10% Similarity=0.015 Sum_probs=94.8
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCc---EEEEeecCCCceEEEEEEeC-CEEEEEEeeCCEEEEEeCCC
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGK---VEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNN 179 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgk---v~~~~~l~~~~FgEGit~~g-~~LyqlTwk~~~v~V~D~~t 179 (276)
..-...+.|++|+.++.+++ .+..|+.||+++++ +.....-+..-.-..+++.. +++....-.++.+.+||..+
T Consensus 100 ~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 177 (377)
T 3dwl_C 100 NRAATFVRWSPNEDKFAVGS--GARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYV 177 (377)
T ss_dssp SSCEEEEECCTTSSCCEEEE--SSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECC
T ss_pred CCceEEEEECCCCCEEEEEe--cCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEe
Confidence 34457999999987666666 57789999999987 34444432233344666653 45555566789999999853
Q ss_pred ------------------CcEEEEEecC-CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcE----EEEEEeeeCCEeee
Q 023864 180 ------------------LNKLEEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKV----IRKDIVRYKGREVR 236 (276)
Q Consensus 180 ------------------lk~i~~~~~~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~v----i~~I~V~~~g~pv~ 236 (276)
.+.+.++... .-....+++||+.|+.......|.++|..+.+. +.++.-.. .
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~--- 252 (377)
T 3dwl_C 178 RDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQ--L--- 252 (377)
T ss_dssp SSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSS--S---
T ss_pred cccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCC--C---
Confidence 3344444221 012234678999998887788999999998876 33333221 2
Q ss_pred eeeeeEEE-CCEEEEEeCCCCCeEEEEeCCC
Q 023864 237 NLNELEFI-KGEVWANVWQVWPCIPYAYLQA 266 (276)
Q Consensus 237 ~lNELE~i-dG~lyANvw~s~d~I~vIDp~T 266 (276)
.++-+.+. ||++.+.. .. +.+.+++...
T Consensus 253 ~v~~~~~s~~~~~l~~~-~~-~~~~~~~~~~ 281 (377)
T 3dwl_C 253 PLRSLLWANESAIVAAG-YN-YSPILLQGNE 281 (377)
T ss_dssp CEEEEEEEETTEEEEEE-SS-SSEEEECCCC
T ss_pred ceEEEEEcCCCCEEEEE-cC-CcEEEEEeCC
Confidence 23445565 77766665 45 7777888764
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.004 Score=59.82 Aligned_cols=113 Identities=14% Similarity=0.165 Sum_probs=68.1
Q ss_pred ceeeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCce-------EEEEEEe---
Q 023864 89 SIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYF-------GEGLTLL--- 158 (276)
Q Consensus 89 ~~~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~F-------gEGit~~--- 158 (276)
+-++++++.+- -..++ ||+|.+||+||++.- ....|.+++.++|+......++.... .-||+++
T Consensus 15 ~gf~~~~~a~~--l~~P~--~~a~~pdG~l~V~e~--~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf 88 (454)
T 1cru_A 15 ENFDKKVILSN--LNKPH--ALLWGPDNQIWLTER--ATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDF 88 (454)
T ss_dssp TTSCEEEEECC--CSSEE--EEEECTTSCEEEEET--TTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTT
T ss_pred CCeEEEEEECC--CCCce--EEEEcCCCcEEEEEc--CCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCc
Confidence 33566666541 12334 999999999998743 33479999988887654444543211 1289998
Q ss_pred --CCEEEEEEee------------CCEEEEEeCCC--C-----cEE-EEEecC---CCCeeEEeeCCCEEEEECC
Q 023864 159 --GEKLFQVTWL------------QKTGFIYDQNN--L-----NKL-EEFTHQ---MKDGWGLATDGKVLFGSDG 208 (276)
Q Consensus 159 --g~~LyqlTwk------------~~~v~V~D~~t--l-----k~i-~~~~~~---~~EGWGLT~Dg~~L~vSDG 208 (276)
++.||+..-. .+.+..++.+. . +++ ..++.. .+-+..+.+|| .||++-|
T Consensus 89 ~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~~G 162 (454)
T 1cru_A 89 KNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTIG 162 (454)
T ss_dssp TTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS-CEEEEEC
T ss_pred CcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC-eEEEEEC
Confidence 8899999864 35777776432 1 222 223322 11222355788 5999855
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.041 Score=48.53 Aligned_cols=165 Identities=7% Similarity=0.057 Sum_probs=93.1
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCc--EEEEeecC-CCceEEEEEEeC-CEEEEEEe
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGK--VEAINQME-GSYFGEGLTLLG-EKLFQVTW 167 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgk--v~~~~~l~-~~~FgEGit~~g-~~LyqlTw 167 (276)
+.+.++++.. ...-...+.|+++ ++.+++ .+..|+.||+++++ .......+ ..---..+++.. +.+....-
T Consensus 3 ~~~~~~~~~~-h~~~v~~~~~s~~--~las~~--~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s 77 (330)
T 2hes_X 3 SINLIKSLKL-YKEKIWSFDFSQG--ILATGS--TDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS 77 (330)
T ss_dssp CCEEEEEEEC-CSSCEEEEEEETT--EEEEEE--SSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEE
T ss_pred ccccceeecc-CCCceeeeccCCC--EEEEEc--CCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEe
Confidence 3456667653 2344568999976 555555 67899999998863 33333222 211223555543 34445555
Q ss_pred eCCEEEEEeCCC-------CcEEEEEecCCC--CeeEEeeCCCEEEEECCCceEEEEcCCCC----cEEEEEEeeeCCEe
Q 023864 168 LQKTGFIYDQNN-------LNKLEEFTHQMK--DGWGLATDGKVLFGSDGSSMLYQIDPQTL----KVIRKDIVRYKGRE 234 (276)
Q Consensus 168 k~~~v~V~D~~t-------lk~i~~~~~~~~--EGWGLT~Dg~~L~vSDGS~~L~viDp~t~----~vi~~I~V~~~g~p 234 (276)
.++++.+||..+ .+.+..+.-... ....+++||+.|.....+..|.++|..+. +.+..+.-. .
T Consensus 78 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h--~-- 153 (330)
T 2hes_X 78 FDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEH--S-- 153 (330)
T ss_dssp TTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCC--S--
T ss_pred CCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccC--C--
Confidence 689999999843 344555532111 23346789998888767788999998432 233322211 1
Q ss_pred eeeeeeeEEE-CCEEEEEeCCCCCeEEEEeCCCC
Q 023864 235 VRNLNELEFI-KGEVWANVWQVWPCIPYAYLQAF 267 (276)
Q Consensus 235 v~~lNELE~i-dG~lyANvw~s~d~I~vIDp~T~ 267 (276)
..++.+.|. +|.+.|..-.+ ..|.+-|..++
T Consensus 154 -~~v~~v~~~p~~~~l~s~s~D-~~i~iW~~~~~ 185 (330)
T 2hes_X 154 -QDVKHVIWHPSEALLASSSYD-DTVRIWKDYDD 185 (330)
T ss_dssp -SCEEEEEECSSSSEEEEEETT-SCEEEEEEETT
T ss_pred -CceEEEEECCCCCEEEEEcCC-CeEEEEECCCC
Confidence 134445554 45555555445 66666666553
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0013 Score=57.99 Aligned_cols=152 Identities=13% Similarity=0.066 Sum_probs=88.3
Q ss_pred ceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCC-ceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEE
Q 023864 107 TQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGS-YFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLE 184 (276)
Q Consensus 107 TQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~-~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~ 184 (276)
...+.|+|||+ |+.+...-|...|..+|+++++......-+.. .++.-...++++|+.+.. .+.++++|.++.+...
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~-~~~l~~~d~~~~~~~~ 116 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKN-ELNLMKVDLETLEEQV 116 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEET-TTEEEEEETTTCCEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEc-CCcEEEEECCCCCcEE
Confidence 45778999985 43333323667899999999986543222211 111123334567765554 4589999999887655
Q ss_pred EEecCCCCeeEE-----------------------eeCCCEEEEE-----CCCceEEEEcCCCCcEEEEEEeeeCCEeee
Q 023864 185 EFTHQMKDGWGL-----------------------ATDGKVLFGS-----DGSSMLYQIDPQTLKVIRKDIVRYKGREVR 236 (276)
Q Consensus 185 ~~~~~~~EGWGL-----------------------T~Dg~~L~vS-----DGS~~L~viDp~t~~vi~~I~V~~~g~pv~ 236 (276)
.+..+ .+|.- ++||+.+.+. ++...|+++|+++.+...... . . .
T Consensus 117 ~~~~~--~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~-~--~---~ 188 (396)
T 3c5m_A 117 IYTVD--EEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ-D--T---A 188 (396)
T ss_dssp EEECC--TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE-E--S---S
T ss_pred EEecc--cccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeecc-C--C---c
Confidence 55433 44431 3445544332 456799999999987654332 1 1 1
Q ss_pred eeeeeEEEC--CE-E-EEEeCCCC----CeEEEEeCCCCc
Q 023864 237 NLNELEFIK--GE-V-WANVWQVW----PCIPYAYLQAFG 268 (276)
Q Consensus 237 ~lNELE~id--G~-l-yANvw~s~----d~I~vIDp~T~~ 268 (276)
.+..+.+.. |. | |+.. ..+ ..|.++|.++++
T Consensus 189 ~~~~~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~~~~ 227 (396)
T 3c5m_A 189 WLGHPIYRPFDDSTVGFCHE-GPHDLVDARMWLVNEDGSN 227 (396)
T ss_dssp CEEEEEEETTEEEEEEEEEC-SCSSSCSCCCEEEETTSCC
T ss_pred ccccceECCCCCCEEEEEec-CCCCCCCceEEEEECCCCc
Confidence 334455653 43 3 4443 221 268899987754
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00026 Score=69.06 Aligned_cols=158 Identities=12% Similarity=0.078 Sum_probs=92.0
Q ss_pred ceEEEEecCCEEEEEcCCC-------CCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCC
Q 023864 107 TQGLLYAENDTLFESTGLY-------GRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNN 179 (276)
Q Consensus 107 TQGL~~~~dg~LyeStG~y-------g~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~t 179 (276)
...+.|+|||+.+..+... +...|+.+|+++|+.+....+......-.+..+|++|... .++.++++|.++
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~--~~~~i~~~~~~~ 139 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYV--YQNNIYLKQRPG 139 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEE--ETTEEEEESSTT
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCCCEEEEE--ECCeEEEEeCCC
Confidence 3589999998743323211 1478999999999874323454444433444456666655 488999999988
Q ss_pred CcEEEEEecCCC---------------------CeeEEeeCCCEEEE-E-CCC---------------------------
Q 023864 180 LNKLEEFTHQMK---------------------DGWGLATDGKVLFG-S-DGS--------------------------- 209 (276)
Q Consensus 180 lk~i~~~~~~~~---------------------EGWGLT~Dg~~L~v-S-DGS--------------------------- 209 (276)
.+... +..... .+...+|||+.|+. + |.+
T Consensus 140 g~~~~-l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g 218 (719)
T 1z68_A 140 DPPFQ-ITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAG 218 (719)
T ss_dssp SCCEE-CCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTT
T ss_pred CCcEE-EecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCC
Confidence 77643 221100 25668899998865 3 322
Q ss_pred -----ceEEEEcCCCCcEEEEEEeee----CCEeeeeeeeeEEE-CCEEEEEeCCC---CCeEEEEe----CCCCc
Q 023864 210 -----SMLYQIDPQTLKVIRKDIVRY----KGREVRNLNELEFI-KGEVWANVWQV---WPCIPYAY----LQAFG 268 (276)
Q Consensus 210 -----~~L~viDp~t~~vi~~I~V~~----~g~pv~~lNELE~i-dG~lyANvw~s---~d~I~vID----p~T~~ 268 (276)
.+|+++|.++.+.+..+.+.. .++ -..+..+.|. ||++++..... ...|.++| +++++
T Consensus 219 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~ 293 (719)
T 1z68_A 219 AKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASS-DYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWD 293 (719)
T ss_dssp SCCCEEEEEEEESSCHHHHCCEECCCCHHHHTS-CEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEE
T ss_pred CCCCeeEEEEEECCCCCccceeEccCCccCCCC-cceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCc
Confidence 278888988876532223321 011 1123444554 67755442111 02488899 87754
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0091 Score=54.34 Aligned_cols=143 Identities=9% Similarity=-0.013 Sum_probs=93.5
Q ss_pred EEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeC-------------CEEEEE
Q 023864 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ-------------KTGFIY 175 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~-------------~~v~V~ 175 (276)
|++...++.+|.+.. ++.+.|.+++.+.... .++.-+ -+.-|.+.|+.||-+.... ..++++
T Consensus 19 g~~~~~g~~iy~~n~-~d~~~ly~~~~dg~~~-~~l~~~---~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i 93 (302)
T 3s25_A 19 GLFCESDGEVFFSNT-NDNGRLYAMNIDGSNI-HKLSND---TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRI 93 (302)
T ss_dssp TCEEEETTEEEEEEG-GGTTEEEEEETTSCSC-EEEEEE---EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEE
T ss_pred eEEEEeCCEEEEEeC-CCCceEEEEcCCCCCC-EEccCC---ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEE
Confidence 454444688998866 4789999999876543 222211 2456789999999998864 578999
Q ss_pred eCCCCcEEEEEecCCCCeeEEeeCCCEEEEEC----CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEE
Q 023864 176 DQNNLNKLEEFTHQMKDGWGLATDGKVLFGSD----GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWAN 251 (276)
Q Consensus 176 D~~tlk~i~~~~~~~~EGWGLT~Dg~~L~vSD----GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyAN 251 (276)
|.+..+. ..+.- ..|..++++|++||.+| +...|+.+|...-. .++|.-.. ..+ .-++++.||-.
T Consensus 94 ~~dg~~~-~~l~~--~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~-~~~------~~~~g~~iy~t 162 (302)
T 3s25_A 94 KRNGHGS-TVLDP--DPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHY-LFT------CNTSDRYFYYN 162 (302)
T ss_dssp ETTSCCC-EEEEC--SCEEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSC-CCC------SEEETTEEEEE
T ss_pred eCCCCcc-eEeec--CCccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCC-ceE------eeEECCEEEEE
Confidence 9887763 33332 25667889999999875 78899999987433 33333221 111 23666676644
Q ss_pred eCCCCCeEEEEeCCCCc
Q 023864 252 VWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 252 vw~s~d~I~vIDp~T~~ 268 (276)
--.. +.|.+++...+.
T Consensus 163 ~~g~-~~Iy~~~l~g~~ 178 (302)
T 3s25_A 163 NPKN-GQLYRYDTASQS 178 (302)
T ss_dssp CTTT-CCEEEEETTTTE
T ss_pred eCCC-ceEEEEECCCCC
Confidence 3345 677777766644
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00077 Score=66.98 Aligned_cols=157 Identities=8% Similarity=0.050 Sum_probs=90.0
Q ss_pred eEEEEecCCE-EEEEcCC------CCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCC
Q 023864 108 QGLLYAENDT-LFESTGL------YGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNL 180 (276)
Q Consensus 108 QGL~~~~dg~-LyeStG~------yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tl 180 (276)
..+.|+|||+ |..+++. .....+..||+++|++..-...+.....-....+|++|.-. .++.++++|.++.
T Consensus 65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~--~~~~i~~~~~~~~ 142 (740)
T 4a5s_A 65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV--WNNDIYVKIEPNL 142 (740)
T ss_dssp CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE--ETTEEEEESSTTS
T ss_pred cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEE--ECCeEEEEECCCC
Confidence 4588999986 4433331 01256789999999865432323344444445556666554 5789999999887
Q ss_pred cEEEEEecCCC---------------------CeeEEeeCCCEEEE-E-CCC----------------------------
Q 023864 181 NKLEEFTHQMK---------------------DGWGLATDGKVLFG-S-DGS---------------------------- 209 (276)
Q Consensus 181 k~i~~~~~~~~---------------------EGWGLT~Dg~~L~v-S-DGS---------------------------- 209 (276)
+.. ++..... .+...+|||+.|.. + |.+
T Consensus 143 ~~~-~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~ 221 (740)
T 4a5s_A 143 PSY-RITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKA 221 (740)
T ss_dssp CCE-ECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBT
T ss_pred ceE-EEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCC
Confidence 643 3322211 13557899997744 3 211
Q ss_pred ------ceEEEEcCCC---Cc--EEEEEEeeeC--CEeeeeeeeeEEE-CCEEEEEeCC---CCCeEEEEeCCCCc
Q 023864 210 ------SMLYQIDPQT---LK--VIRKDIVRYK--GREVRNLNELEFI-KGEVWANVWQ---VWPCIPYAYLQAFG 268 (276)
Q Consensus 210 ------~~L~viDp~t---~~--vi~~I~V~~~--g~pv~~lNELE~i-dG~lyANvw~---s~d~I~vIDp~T~~ 268 (276)
-+|+++|.++ .+ ...++..... ++ -..+.++.|. ||+++|-... .+..|.++|++||+
T Consensus 222 G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 222 GAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIG-DHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp TSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTS-CEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred cCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCC-CeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 1688888888 63 2223332110 11 1234555665 7885433222 21269999999876
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0024 Score=60.00 Aligned_cols=166 Identities=13% Similarity=0.137 Sum_probs=89.2
Q ss_pred eEEEEEEecCCCCCceEEEEecCCEEEEEcCCCC-----------CCeEEEEeCCCCcEE--------EEeecCCCceEE
Q 023864 93 IQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYG-----------RSSVRRVALETGKVE--------AINQMEGSYFGE 153 (276)
Q Consensus 93 ~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg-----------~S~I~~iDl~tgkv~--------~~~~l~~~~FgE 153 (276)
-.|+..+|....-+...|.|.+||.||.++|..+ ..+|.++|++. ++- .....+- .-..
T Consensus 128 ~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG-~ip~~nPf~~~~i~a~G~-RNp~ 205 (347)
T 3das_A 128 DTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDG-EPAPGNPFPGSPVYSYGH-RNVQ 205 (347)
T ss_dssp EEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTS-SBCTTCSSTTCCEEEBCC-SBCC
T ss_pred EEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCC-CccCCCCCCCCeEEeeCC-CCcc
Confidence 3466778876667878899999999999998533 35777887753 210 0111121 1134
Q ss_pred EEEEe-CCEEEEEEeeCCE---EEEEeCCC----------------CcEEEEEecCCCCeeEEeeCCCEEEEEC-CCceE
Q 023864 154 GLTLL-GEKLFQVTWLQKT---GFIYDQNN----------------LNKLEEFTHQMKDGWGLATDGKVLFGSD-GSSML 212 (276)
Q Consensus 154 Git~~-g~~LyqlTwk~~~---v~V~D~~t----------------lk~i~~~~~~~~EGWGLT~Dg~~L~vSD-GS~~L 212 (276)
|++++ .++||+.....+. +..+-+.. ...+..+.......-|++-.+..+|+.. ...+|
T Consensus 206 Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~g~~~~~~l~~~~l 285 (347)
T 3das_A 206 GLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAEGSVWMAGLRGERL 285 (347)
T ss_dssp EEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEETTEEEEEESTTCSE
T ss_pred eEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEcCceeeccccCCEE
Confidence 67776 4688888764432 22221110 0011111100012235655556777766 56788
Q ss_pred EEEcCCCCcEEEE--EEe-eeCCEeeeeeeeeEE-ECCEEEEEeCCC---------CCeEEEEeC
Q 023864 213 YQIDPQTLKVIRK--DIV-RYKGREVRNLNELEF-IKGEVWANVWQV---------WPCIPYAYL 264 (276)
Q Consensus 213 ~viDp~t~~vi~~--I~V-~~~g~pv~~lNELE~-idG~lyANvw~s---------~d~I~vIDp 264 (276)
..++.+..+.+.+ .-+ +..++ +-.++. -||.||+..... +|+|++|-+
T Consensus 286 ~~v~~~~~~~~~~~e~~l~~~~gR----~~dv~~~pDG~lyv~td~~~g~g~p~~~ddri~r~~~ 346 (347)
T 3das_A 286 WRIPLKGTAAAADPQAFLEGEYGR----LRTVAPAGGDKLWLVTSNTDGRGDAKGGDDRILELEV 346 (347)
T ss_dssp EEEEEETTEESSCCEEESTTTSSC----EEEEEEEETTEEEEEECTTSSSSCCCTTCSCEEEEEE
T ss_pred EEEEecCCceecceEEeecCCCCC----ccEEEECCCCcEEEEEcCCCCCCCCCCCCCEEEEEeC
Confidence 8777655432111 111 11233 334444 389999886543 257888754
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00079 Score=61.92 Aligned_cols=121 Identities=12% Similarity=0.067 Sum_probs=82.5
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeCCEEEEEeCCCCc
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLN 181 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~~~v~V~D~~tlk 181 (276)
......+.|++++.++.+++ .+..|+.||+++..+ .....-.. --..+++. ++.++...-.++.+.+||..+.+
T Consensus 209 ~~~~~~~~~~~~~~~l~~g~--~dg~i~~wd~~~~~~-~~~~~h~~-~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~ 284 (435)
T 4e54_B 209 NIWFCSLDVSASSRMVVTGD--NVGNVILLNMDGKEL-WNLRMHKK-KVTHVALNPCCDWFLATASVDQTVKIWDLRQVR 284 (435)
T ss_dssp SCCCCCEEEETTTTEEEEEC--SSSBEEEEESSSCBC-CCSBCCSS-CEEEEEECTTCSSEEEEEETTSBCCEEETTTCC
T ss_pred CccEEEEEECCCCCEEEEEe--CCCcEeeeccCccee-EEEecccc-eEEeeeecCCCceEEEEecCcceeeEEeccccc
Confidence 34456789999988777666 677899999976543 22222111 12455664 45577777788999999998887
Q ss_pred EEEEEecC--CCC---eeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEe
Q 023864 182 KLEEFTHQ--MKD---GWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIV 228 (276)
Q Consensus 182 ~i~~~~~~--~~E---GWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V 228 (276)
....+... ... ...+++||+.|+....+..|.++|..+++....+..
T Consensus 285 ~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~ 336 (435)
T 4e54_B 285 GKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIP 336 (435)
T ss_dssp SSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECC
T ss_pred ccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEec
Confidence 66555321 111 122568999998877788999999999887766543
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.02 Score=50.89 Aligned_cols=156 Identities=7% Similarity=0.036 Sum_probs=95.4
Q ss_pred CCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC-CceEEEEEEeC-CEEEEEEeeCCEEEEEeCCCC
Q 023864 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG-SYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNL 180 (276)
Q Consensus 103 ~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~-~~FgEGit~~g-~~LyqlTwk~~~v~V~D~~tl 180 (276)
.......+.|+|||.++.+++ .+..|+.||..+++......+.. .-.-..+++.. +++....-.++.+.++|..+.
T Consensus 60 h~~~v~~~~~sp~g~~l~s~s--~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~ 137 (345)
T 3fm0_A 60 HQRTVRKVAWSPCGNYLASAS--FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEE 137 (345)
T ss_dssp CSSCEEEEEECTTSSEEEEEE--TTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTT
T ss_pred cCCcEEEEEECCCCCEEEEEE--CCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCC
Confidence 355668999999998877777 67889999998886543333332 22234566653 455555567899999998776
Q ss_pred cE---EEEEecCCC--CeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCC
Q 023864 181 NK---LEEFTHQMK--DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQ 254 (276)
Q Consensus 181 k~---i~~~~~~~~--EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~ 254 (276)
+. +..+.-... ....+.+||+.|.....+..|.++|.++.+.+......... ..++.|.+. +|...|..-.
T Consensus 138 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~---~~v~~l~~sp~g~~l~s~s~ 214 (345)
T 3fm0_A 138 DEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHE---STVWSLAFDPSGQRLASCSD 214 (345)
T ss_dssp SCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCS---SCEEEEEECTTSSEEEEEET
T ss_pred CCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCC---CceEEEEECCCCCEEEEEeC
Confidence 43 333331111 23346789998888766778999998776543222222111 234455665 4555555544
Q ss_pred CCCeEEEEeC
Q 023864 255 VWPCIPYAYL 264 (276)
Q Consensus 255 s~d~I~vIDp 264 (276)
+ ..|.+-|.
T Consensus 215 D-~~v~iW~~ 223 (345)
T 3fm0_A 215 D-RTVRIWRQ 223 (345)
T ss_dssp T-SCEEEEEE
T ss_pred C-CeEEEecc
Confidence 4 56666553
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0026 Score=62.72 Aligned_cols=154 Identities=10% Similarity=0.016 Sum_probs=90.3
Q ss_pred ceEEEEecCCEE--EEE-cCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEee------------C
Q 023864 107 TQGLLYAENDTL--FES-TGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWL------------Q 169 (276)
Q Consensus 107 TQGL~~~~dg~L--yeS-tG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk------------~ 169 (276)
..++.|+|||++ |.+ .+.-+...|+++|+++|+.+....++...| .++++. |..|+-.... .
T Consensus 123 ~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~-~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~ 201 (695)
T 2bkl_A 123 LGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKY-ATPKWTPDSKGFYYEWLPTDPSIKVDERPGY 201 (695)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTT-CCCEECTTSSEEEEEECCCCTTSCGGGGGGG
T ss_pred EEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccc-cceEEecCCCEEEEEEecCCCCCccccCCCC
Confidence 468899999863 322 121134789999999998641223333222 355664 4567666653 3
Q ss_pred CEEEEEeCCCCcEEEE--EecC----CCCeeEEeeCCCEEEEEC--C--CceEEEEcCCCCcEEEEEEeeeCCEeeeeee
Q 023864 170 KTGFIYDQNNLNKLEE--FTHQ----MKDGWGLATDGKVLFGSD--G--SSMLYQIDPQTLKVIRKDIVRYKGREVRNLN 239 (276)
Q Consensus 170 ~~v~V~D~~tlk~i~~--~~~~----~~EGWGLT~Dg~~L~vSD--G--S~~L~viDp~t~~vi~~I~V~~~g~pv~~lN 239 (276)
.+++++|..+.+...+ +..+ .-.+..+++||++|+++- + .+.|+++|..+.+.. .+....++. .
T Consensus 202 ~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~--~--- 275 (695)
T 2bkl_A 202 TTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLVKGVGAK--Y--- 275 (695)
T ss_dssp CEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEEECSSCC--E---
T ss_pred CEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-EeecCCCce--E---
Confidence 4599999988763211 2211 012556889999886632 3 569999998776543 343332211 1
Q ss_pred eeEEECCEEE-EEeCC--CCCeEEEEeCCCCc
Q 023864 240 ELEFIKGEVW-ANVWQ--VWPCIPYAYLQAFG 268 (276)
Q Consensus 240 ELE~idG~ly-ANvw~--s~d~I~vIDp~T~~ 268 (276)
...+.+|.+| ...|. . ..|.++|.++++
T Consensus 276 ~~~~~~g~l~~~s~~~~~~-~~l~~~d~~~~~ 306 (695)
T 2bkl_A 276 EVHAWKDRFYVLTDEGAPR-QRVFEVDPAKPA 306 (695)
T ss_dssp EEEEETTEEEEEECTTCTT-CEEEEEBTTBCS
T ss_pred EEEecCCcEEEEECCCCCC-CEEEEEeCCCCC
Confidence 1113466555 44443 3 689999998864
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=97.33 E-value=0.073 Score=46.91 Aligned_cols=124 Identities=9% Similarity=0.057 Sum_probs=84.1
Q ss_pred eeEEEEEEecCCCCCceEEEE-----ec-CCEEEEEcCCCCCCeEEEEeCCCCc-------EEEEeecCCCceEEEEEEe
Q 023864 92 TIQVVNEFPHDPRAFTQGLLY-----AE-NDTLFESTGLYGRSSVRRVALETGK-------VEAINQMEGSYFGEGLTLL 158 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~-----~~-dg~LyeStG~yg~S~I~~iDl~tgk-------v~~~~~l~~~~FgEGit~~ 158 (276)
.++...++.- ....+..+.| .+ |+.++.+++ .+..|+.||+.+++ ..... -+....-..+++.
T Consensus 10 ~~~~~~~l~g-H~~~V~~~~~~~s~~~~~d~~~l~sgs--~D~~v~iWd~~~~~~~~~~~~~~~~l-~~h~~~V~~~~~~ 85 (343)
T 2xzm_R 10 QVVKRGILEG-HSDWVTSIVAGFSQKENEDSPVLISGS--RDKTVMIWKLYEEEQNGYFGIPHKAL-TGHNHFVSDLALS 85 (343)
T ss_dssp EEEEEEEEEC-CSSCEEEEEECCCSSTTCCCCEEEEEE--TTSCEEEEEECSSCCSSBSEEEEEEE-CCCSSCEEEEEEC
T ss_pred Eeeeeeeecc-chhhhhheeeEEEeecCCCCCEEEEEc--CCCEEEEEECCcCCcccccccccchh-ccCCCceEEEEEC
Confidence 4555666652 3556789998 65 788877777 67889999997643 22211 1222223455554
Q ss_pred C-CEEEEEEeeCCEEEEEeCCCCcEEEEEecCCCC--eeEEeeCCCEEEEECCCceEEEEcCCC
Q 023864 159 G-EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKD--GWGLATDGKVLFGSDGSSMLYQIDPQT 219 (276)
Q Consensus 159 g-~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~E--GWGLT~Dg~~L~vSDGS~~L~viDp~t 219 (276)
. +.+.+..-.++++.+||..+.+.+.++.-...+ ...+.+||+.|+....+..|.++|...
T Consensus 86 ~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~ 149 (343)
T 2xzm_R 86 QENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG 149 (343)
T ss_dssp SSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS
T ss_pred CCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC
Confidence 3 445556667899999999999999888632122 334678999998877788999999864
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.018 Score=57.03 Aligned_cols=161 Identities=14% Similarity=0.056 Sum_probs=96.3
Q ss_pred CCceEEEEecCCE-EEEEcCC-CCCCeEEEEeCCCC--cEEEEeecCCCceEEEEEEeCCEEEEEEeeC---CEEEEEeC
Q 023864 105 AFTQGLLYAENDT-LFESTGL-YGRSSVRRVALETG--KVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ---KTGFIYDQ 177 (276)
Q Consensus 105 aFTQGL~~~~dg~-LyeStG~-yg~S~I~~iDl~tg--kv~~~~~l~~~~FgEGit~~g~~LyqlTwk~---~~v~V~D~ 177 (276)
.|.-++.+++||+ |+.+... ...+.|..+|++++ +.. .+.-+....-.-+..+|++||.++.++ .+++++|.
T Consensus 234 ~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~-~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~ 312 (693)
T 3iuj_A 234 HRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLL-TVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDA 312 (693)
T ss_dssp CSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCE-EEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEET
T ss_pred eEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceE-EEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeC
Confidence 3446889999986 5443332 23469999999877 332 222222111112667899999999875 68999999
Q ss_pred CCCcE--EEEE-ecCCCCeeEEeeCCCEEEEE---CCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEE
Q 023864 178 NNLNK--LEEF-THQMKDGWGLATDGKVLFGS---DGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWAN 251 (276)
Q Consensus 178 ~tlk~--i~~~-~~~~~EGWGLT~Dg~~L~vS---DGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyAN 251 (276)
++.+. ..++ +.. .+-.+++++|++|+++ ||..+|+++|.++. ..+.+.....+. +..+. ....+++|+..
T Consensus 313 ~~~~~~~~~~l~~~~-~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~-~~~~~-~~~d~~~l~~~ 388 (693)
T 3iuj_A 313 ANPGPAHWRDLIPER-QQVLTVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGS-VSGFN-GKHDDPALYFG 388 (693)
T ss_dssp TSCCGGGCEEEECCC-SSCEEEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSE-EEECC-CCTTCSCEEEE
T ss_pred CCCCccccEEEecCC-CCEEEEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCce-EEeee-cCCCCCEEEEE
Confidence 87654 3344 322 1222788899988763 57789999998854 445555433222 11111 00113345543
Q ss_pred --eCCCCCeEEEEeCCCCcEE
Q 023864 252 --VWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 252 --vw~s~d~I~vIDp~T~~v~ 270 (276)
-+.+-..|..+|.++++..
T Consensus 389 ~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 389 FENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EECSSSCCEEEEECTTTCCEE
T ss_pred ecCCCCCCEEEEEECCCCeEE
Confidence 2233257999999887654
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.013 Score=58.62 Aligned_cols=150 Identities=11% Similarity=0.012 Sum_probs=98.4
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeec------CCCceEEEEEEe-CCEEEEEEeeCCEEEEEe
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM------EGSYFGEGLTLL-GEKLFQVTWLQKTGFIYD 176 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l------~~~~FgEGit~~-g~~LyqlTwk~~~v~V~D 176 (276)
...+..+..+++|+||.+|. +-|.++|+++++...-... +. .+--.+..+ +++||+.|. +-++++|
T Consensus 451 ~~~v~~i~~d~~g~lwigt~----~Gl~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~i~~d~~g~lWigt~--~Gl~~~~ 523 (795)
T 4a2l_A 451 NENVYAILPDGEGNLWLGTL----SALVRFNPEQRSFTTIEKEKDGTPVVS-KQITTLFRDSHKRLWIGGE--EGLSVFK 523 (795)
T ss_dssp CSCEEEEEECSSSCEEEEES----SCEEEEETTTTEEEECCBCTTCCBCCC-CCEEEEEECTTCCEEEEES--SCEEEEE
T ss_pred CCeeEEEEECCCCCEEEEec----CceeEEeCCCCeEEEccccccccccCC-ceEEEEEECCCCCEEEEeC--CceEEEe
Confidence 34567888888899999875 3599999999977543221 11 222355555 579999997 5688999
Q ss_pred CCCCcEEEEEec-------CCCCeeEEeeCC-CEEEE-ECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CC
Q 023864 177 QNNLNKLEEFTH-------QMKDGWGLATDG-KVLFG-SDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG 246 (276)
Q Consensus 177 ~~tlk~i~~~~~-------~~~EGWGLT~Dg-~~L~v-SDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG 246 (276)
+++.+. .+.. +...-.++..|. ..||+ +++ -|+.+|+++.+... .. ..+|-|-..++.+... +|
T Consensus 524 ~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~--Gl~~~d~~~~~~~~-~~-~~~gl~~~~i~~i~~d~~g 597 (795)
T 4a2l_A 524 QEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE--GFYCFNEKDKQIKR-YN-TTNGLPNNVVYGILEDSFG 597 (795)
T ss_dssp EETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS--CEEEEETTTTEEEE-EC-GGGTCSCSCEEEEEECTTS
T ss_pred CCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC--CceeECCCCCcEEE-eC-CCCCCchhheEEEEECCCC
Confidence 887665 4431 111234566543 45776 443 79999999875542 22 2345554455555554 68
Q ss_pred EEEEEeCCCCCeEEEEeCCCCcE
Q 023864 247 EVWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 247 ~lyANvw~s~d~I~vIDp~T~~v 269 (276)
.||+.- . +-|.++||++++.
T Consensus 598 ~lWi~t--~-~Gl~~~~~~~~~~ 617 (795)
T 4a2l_A 598 RLWLST--N-RGISCFNPETEKF 617 (795)
T ss_dssp CEEEEE--T-TEEEEEETTTTEE
T ss_pred CEEEEc--C-CceEEEcCCCCcE
Confidence 999887 4 7799999998653
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.011 Score=52.31 Aligned_cols=153 Identities=11% Similarity=0.138 Sum_probs=97.3
Q ss_pred EEEEecCCEEEEEcCCC----C-----CCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeC-------CEE
Q 023864 109 GLLYAENDTLFESTGLY----G-----RSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ-------KTG 172 (276)
Q Consensus 109 GL~~~~dg~LyeStG~y----g-----~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~-------~~v 172 (276)
.++.. +++||.-.|.. + .+.+.+||+.+++-....++|....+-+++..+++||++-=.+ +.+
T Consensus 51 ~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 129 (318)
T 2woz_A 51 SIVTQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSV 129 (318)
T ss_dssp EEECS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEE
T ss_pred EEEEE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEECCEEEEEcCccCCCCcccceE
Confidence 34433 57898877732 1 1238899999998766666776555567788899999996543 578
Q ss_pred EEEeCCCCcEE--EEEecCCCCeeEEeeCCCEEEEECC-------CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEE
Q 023864 173 FIYDQNNLNKL--EEFTHQMKDGWGLATDGKVLFGSDG-------SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEF 243 (276)
Q Consensus 173 ~V~D~~tlk~i--~~~~~~~~EGWGLT~Dg~~L~vSDG-------S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~ 243 (276)
.+||+.+.+-. ...+.+ ..+-+.+..+..||+--| .+.++.+|+++.+-...-.. ...+.. --+..
T Consensus 130 ~~yd~~~~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~---~~~~~ 204 (318)
T 2woz_A 130 LCYDPVAAKWSEVKNLPIK-VYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPM-KTPRSM---FGVAI 204 (318)
T ss_dssp EEEETTTTEEEEECCCSSC-EESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCC-SSCCBS---CEEEE
T ss_pred EEEeCCCCCEeECCCCCCc-ccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCC-CCCccc---ceEEE
Confidence 99999876543 333333 345555556667777444 46799999999875432111 111111 12345
Q ss_pred ECCEEEEEeC-----CCCCeEEEEeCCCCc
Q 023864 244 IKGEVWANVW-----QVWPCIPYAYLQAFG 268 (276)
Q Consensus 244 idG~lyANvw-----~s~d~I~vIDp~T~~ 268 (276)
.+|+||+-=. .. +.+.+.|+++++
T Consensus 205 ~~~~iyv~GG~~~~~~~-~~~~~yd~~~~~ 233 (318)
T 2woz_A 205 HKGKIVIAGGVTEDGLS-ASVEAFDLKTNK 233 (318)
T ss_dssp ETTEEEEEEEEETTEEE-EEEEEEETTTCC
T ss_pred ECCEEEEEcCcCCCCcc-ceEEEEECCCCe
Confidence 6888885432 13 568899999865
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0035 Score=63.03 Aligned_cols=156 Identities=8% Similarity=0.000 Sum_probs=102.3
Q ss_pred CCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEE-----------------------------EEeecCCCceEE
Q 023864 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVE-----------------------------AINQMEGSYFGE 153 (276)
Q Consensus 103 ~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~-----------------------------~~~~l~~~~FgE 153 (276)
-..++..+.|+|||+++.|++ .+..|+ |+++++.+ ....++...+-.
T Consensus 14 ~~~~v~sv~~SpDG~~iASas--~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~ 89 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTF--PDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPR 89 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECS--SSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEE
T ss_pred hhccEEEEEECCCCCEEEEEc--CCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEE
Confidence 346677889999999999887 677775 55555421 011222344556
Q ss_pred EEEEe--CCEEEEEEeeCCEEEEEeCCCCcEEEEEecCC------CCeeEEeeCCCEEEEECCCceEEEEcCCCCcE---
Q 023864 154 GLTLL--GEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQM------KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKV--- 222 (276)
Q Consensus 154 Git~~--g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~------~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~v--- 222 (276)
++++. |..|-.++ .++.+.++|.++ .+..+...+ -....++|||+.|+....+.+|.++|.++.+.
T Consensus 90 ~vawSPdG~~LAs~s-~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~ 166 (588)
T 2j04_A 90 VCKPSPIDDWMAVLS-NNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTP 166 (588)
T ss_dssp EEEECSSSSCEEEEE-TTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCC
T ss_pred EEEECCCCCEEEEEe-CCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccc
Confidence 66664 34455444 678899999766 555555111 12234569999999988899999999998763
Q ss_pred ----EEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCCCCeEEEEeCCCCc
Q 023864 223 ----IRKDIVRYKGREVRNLNELEFIKGEVWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 223 ----i~~I~V~~~g~pv~~lNELE~idG~lyANvw~s~d~I~vIDp~T~~ 268 (276)
++++.....|+. ..+.-+.|..+. .|..-.. +.|-+.|.++++
T Consensus 167 ~~i~l~ti~~~~~gh~-~~V~sVawSPdg-Laass~D-~tVrlWd~~~~~ 213 (588)
T 2j04_A 167 EFYFESSIRLSDAGSK-DWVTHIVWYEDV-LVAALSN-NSVFSMTVSASS 213 (588)
T ss_dssp CCEEEEEEECSCTTCC-CCEEEEEEETTE-EEEEETT-CCEEEECCCSSS
T ss_pred cceeeeeeeccccccc-ccEEEEEEcCCc-EEEEeCC-CeEEEEECCCCc
Confidence 566665555543 344445566444 5555566 899999998866
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.018 Score=50.06 Aligned_cols=128 Identities=12% Similarity=-0.008 Sum_probs=78.8
Q ss_pred CCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeC--C--EEEEEeCCCCcEEEEEecCCCCeeEEeeCCCE
Q 023864 127 RSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ--K--TGFIYDQNNLNKLEEFTHQMKDGWGLATDGKV 202 (276)
Q Consensus 127 ~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~--~--~v~V~D~~tlk~i~~~~~~~~EGWGLT~Dg~~ 202 (276)
.+.|..+|+++++...- .....-.+..+|++|+.+...+ + .++++|.++.+...-...+...+...++||+.
T Consensus 42 ~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~wspdg~~ 117 (347)
T 2gop_A 42 ENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKNIRSLEWNEDSRK 117 (347)
T ss_dssp EEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESEEEEEEECTTSSE
T ss_pred cceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCCccceeECCCCCE
Confidence 67899999999975332 2322223333467888887764 3 48899998877654443321133446789998
Q ss_pred EEEE--------------------CC-------CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCC
Q 023864 203 LFGS--------------------DG-------SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQ 254 (276)
Q Consensus 203 L~vS--------------------DG-------S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~ 254 (276)
|+.+ || ..+|+++|+++.+.++.+.. . ....+.+. ||.+|+....
T Consensus 118 l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~------~~~~~~~spdg~~~~~~~~ 190 (347)
T 2gop_A 118 LLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P------RFSSGIWHRDKIVVNVPHR 190 (347)
T ss_dssp EEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E------TTCEEEEETTEEEEEEECC
T ss_pred EEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C------CcccccCCCCeEEEEEecc
Confidence 7664 22 47899999999887555543 1 23344455 4544444332
Q ss_pred --------CCCeEEEEeCCCCc
Q 023864 255 --------VWPCIPYAYLQAFG 268 (276)
Q Consensus 255 --------s~d~I~vIDp~T~~ 268 (276)
. ..|.++| +++
T Consensus 191 ~~~~~~~~~-~~l~~~d--~~~ 209 (347)
T 2gop_A 191 EIIPQYFKF-WDIYIWE--DGK 209 (347)
T ss_dssp CSSCCSSCC-EEEEEEE--TTE
T ss_pred ccccccccc-ccEEEeC--CCc
Confidence 3 4788898 544
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.041 Score=52.09 Aligned_cols=149 Identities=11% Similarity=-0.094 Sum_probs=85.9
Q ss_pred eEEEEec---CCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCc--eEEEEEEe-CCEEEEE------------EeeC
Q 023864 108 QGLLYAE---NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSY--FGEGLTLL-GEKLFQV------------TWLQ 169 (276)
Q Consensus 108 QGL~~~~---dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~--FgEGit~~-g~~Lyql------------Twk~ 169 (276)
.-|.|++ |+.++.|++ .+..|+.||++||+.+++..-+..+ ..-.+++. ++++.+. --.+
T Consensus 182 ~~l~fs~~~g~~~~LaSgS--~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D 259 (356)
T 2w18_A 182 TILTFAEVQGMQEALLGTT--IMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPV 259 (356)
T ss_dssp CEEEEEEEETSTTEEEEEE--TTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CC
T ss_pred eeEEeeccCCCCceEEEec--CCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCC
Confidence 3566666 567888888 8999999999999988887533211 11122333 2333322 2245
Q ss_pred CEEEEEeCCCCcEEEEEecCCCCe---eEE--eeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE
Q 023864 170 KTGFIYDQNNLNKLEEFTHQMKDG---WGL--ATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI 244 (276)
Q Consensus 170 ~~v~V~D~~tlk~i~~~~~~~~EG---WGL--T~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i 244 (276)
+++-++|+++.+.+..+.+..++| .-+ ..+|..+.....+.+|.++|.++++.++++.-.. ..+ ..-+.|.
T Consensus 260 ~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~--~~v--vs~vafS 335 (356)
T 2w18_A 260 FQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVS--DQH--WSFVKWS 335 (356)
T ss_dssp EEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC----CC--CCEEEEC
T ss_pred cEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCC--CCe--EEEEEEC
Confidence 788889999999888764321112 122 1223334443346789999999999988875211 111 1123344
Q ss_pred -CCEEEEEeCCCCCeEEEEe
Q 023864 245 -KGEVWANVWQVWPCIPYAY 263 (276)
Q Consensus 245 -dG~lyANvw~s~d~I~vID 263 (276)
||...|.--.+ +.|-+=|
T Consensus 336 PDG~~LaSGS~D-~TIklWd 354 (356)
T 2w18_A 336 GTDSHLLAGQKD-GNIFVYH 354 (356)
T ss_dssp SSSSEEEEECTT-SCEEEEE
T ss_pred CCCCEEEEEECC-CcEEEec
Confidence 56544444344 5665544
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0062 Score=53.55 Aligned_cols=111 Identities=10% Similarity=0.080 Sum_probs=68.4
Q ss_pred ceEEEEecCCE-EEEEcCCCCCCe--EEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEe--------------
Q 023864 107 TQGLLYAENDT-LFESTGLYGRSS--VRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTW-------------- 167 (276)
Q Consensus 107 TQGL~~~~dg~-LyeStG~yg~S~--I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTw-------------- 167 (276)
...+.|+|||+ |+..+..-+... |.++|+++|+......++. .. +.+. +++++...-
T Consensus 240 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~--~~--~~~s~~dg~~l~~~~~~~p~~~~~~~~~~ 315 (396)
T 3c5m_A 240 CTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP--CS--HLMSNFDGSLMVGDGCDAPVDVADADSYN 315 (396)
T ss_dssp EEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS--EE--EEEECSSSSEEEEEECCC----------C
T ss_pred ccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC--CC--CCccCCCCceEEEecCCcceeeccccccc
Confidence 45679999985 544332224444 9999999998765544543 22 4443 344444321
Q ss_pred --eCCEEEEEeCCCCcEEEEEecC-C------------CCeeEEeeCCCEEEE-EC--CCceEEEEcCCCCcE
Q 023864 168 --LQKTGFIYDQNNLNKLEEFTHQ-M------------KDGWGLATDGKVLFG-SD--GSSMLYQIDPQTLKV 222 (276)
Q Consensus 168 --k~~~v~V~D~~tlk~i~~~~~~-~------------~EGWGLT~Dg~~L~v-SD--GS~~L~viDp~t~~v 222 (276)
....++++|.++.+. ..+... . .....+++||+.|+. ++ |...|+.+|.++.+.
T Consensus 316 ~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 316 IENDPFLYVLNTKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYK 387 (396)
T ss_dssp CCCCCEEEEEETTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred cCCCCcEEEEecccCce-EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccc
Confidence 347899999987764 333321 1 122467899998755 54 567899999877654
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0012 Score=64.45 Aligned_cols=109 Identities=14% Similarity=0.068 Sum_probs=74.1
Q ss_pred EEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC----CceEEEEEEeCCEEEEEEee--------CCEEEEEe
Q 023864 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG----SYFGEGLTLLGEKLFQVTWL--------QKTGFIYD 176 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~----~~FgEGit~~g~~LyqlTwk--------~~~v~V~D 176 (276)
++.|++||+++.++ ++..|..||+++|+......-.. ....-.+..+|++|...... ++.++++|
T Consensus 20 ~~~~s~dg~~~~~~---~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d 96 (719)
T 1z68_A 20 FPNWISGQEYLHQS---ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD 96 (719)
T ss_dssp CCEESSSSEEEEEC---TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred ccEECCCCeEEEEc---CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence 67889999765543 35689999999998755443211 13333444456777766653 47999999
Q ss_pred CCCCcEE--EEEecCCCCeeEEeeCCCEEEE-ECCCceEEEEcCCCCcEE
Q 023864 177 QNNLNKL--EEFTHQMKDGWGLATDGKVLFG-SDGSSMLYQIDPQTLKVI 223 (276)
Q Consensus 177 ~~tlk~i--~~~~~~~~EGWGLT~Dg~~L~v-SDGS~~L~viDp~t~~vi 223 (276)
.++.+.+ .++.-. .....++|||+.|.. +| ++|+++|.++.+.+
T Consensus 97 ~~~g~~~~~~~l~~~-~~~~~~SPDG~~la~~~~--~~i~~~~~~~g~~~ 143 (719)
T 1z68_A 97 LSNGEFVRGNELPRP-IQYLCWSPVGSKLAYVYQ--NNIYLKQRPGDPPF 143 (719)
T ss_dssp TTTTEECCSSCCCSS-BCCEEECSSTTCEEEEET--TEEEEESSTTSCCE
T ss_pred CCCCccccceecCcc-cccceECCCCCEEEEEEC--CeEEEEeCCCCCcE
Confidence 9988763 222211 244568999987754 54 59999999998764
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0046 Score=61.86 Aligned_cols=158 Identities=6% Similarity=0.002 Sum_probs=99.4
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCC--cEEEEeecCCCceEEEEEEe-C--CEEEEEEeeCCEEEEEeCC
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETG--KVEAINQMEGSYFGEGLTLL-G--EKLFQVTWLQKTGFIYDQN 178 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tg--kv~~~~~l~~~~FgEGit~~-g--~~LyqlTwk~~~v~V~D~~ 178 (276)
..-+..+.|++||.++.+++ .+..|++||++++ +......-... ---.+++. + +.+....-.++.+.+||..
T Consensus 9 ~~~V~~l~~s~dg~~latg~--~dg~I~vwd~~~~~~~~~~~l~~h~~-~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~ 85 (753)
T 3jro_A 9 NELIHDAVLDYYGKRLATCS--SDKTIKIFEVEGETHKLIDTLTGHEG-PVWRVDWAHPKFGTILASCSYDGKVLIWKEE 85 (753)
T ss_dssp CCCEEEECCCSSSCCEEEEE--TTTEEEEEEEETTEEEEEEEECCCSS-CEEEEEECCTTSCSEEEEEETTSCEEEEEEE
T ss_pred cceeEEEEECCCCCeEEEEE--CCCcEEEEecCCCCCccceeccCCcC-ceEEEEecCCCCCCEEEEEeCCCeEEEEECC
Confidence 44457899999988766666 6788999999854 44333321111 22356664 2 4555666678999999998
Q ss_pred CCc--EEEEEecCCC--CeeEEeeC--CCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEEC-------
Q 023864 179 NLN--KLEEFTHQMK--DGWGLATD--GKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIK------- 245 (276)
Q Consensus 179 tlk--~i~~~~~~~~--EGWGLT~D--g~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~id------- 245 (276)
+.+ .+..+..... ....++++ |+.++....+..|.++|..+.+....+....... .++-+.+..
T Consensus 86 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~---~v~~l~~~p~~~~~~~ 162 (753)
T 3jro_A 86 NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI---GVNSASWAPATIEEDG 162 (753)
T ss_dssp TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSS---CEEEEEECCCC-----
T ss_pred CCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCC---ceEEEEecCccccccc
Confidence 876 4444432211 23335677 8888888888999999998875443333332222 234444543
Q ss_pred -------CEEEEEeCCCCCeEEEEeCCCCc
Q 023864 246 -------GEVWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 246 -------G~lyANvw~s~d~I~vIDp~T~~ 268 (276)
|...+..-.+ ..|.+.|..++.
T Consensus 163 ~~~~~~d~~~l~sgs~d-g~I~iwd~~~~~ 191 (753)
T 3jro_A 163 EHNGTKESRKFVTGGAD-NLVKIWKYNSDA 191 (753)
T ss_dssp ----CGGGCCEEEEETT-SCEEEEEEETTT
T ss_pred ccccCCCCCEEEEEECC-CeEEEEeccCCc
Confidence 5555555556 778888877753
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0012 Score=63.89 Aligned_cols=113 Identities=11% Similarity=0.034 Sum_probs=73.2
Q ss_pred eEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC----CceEEEEEEeCCEEEEEEee--------CCEEEEE
Q 023864 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG----SYFGEGLTLLGEKLFQVTWL--------QKTGFIY 175 (276)
Q Consensus 108 QGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~----~~FgEGit~~g~~LyqlTwk--------~~~v~V~ 175 (276)
..+.|++||+++. ++ .+..|+.||+++|+......-.. ....-.+..+|++|...... .+.++++
T Consensus 20 ~~~~~spdg~~~~-~~--~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 20 PEAKWISDTEFIY-RE--QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCBSSSSCBCC-CC--SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccEEcCCCcEEE-Ee--CCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 3677899988543 34 44589999999998765543322 13323333345666655442 2789999
Q ss_pred eCCCCcEEEEEecC-C----CCeeEEeeCCCEE-EEECCCceEEEEcCCCCcEEEEE
Q 023864 176 DQNNLNKLEEFTHQ-M----KDGWGLATDGKVL-FGSDGSSMLYQIDPQTLKVIRKD 226 (276)
Q Consensus 176 D~~tlk~i~~~~~~-~----~EGWGLT~Dg~~L-~vSDGS~~L~viDp~t~~vi~~I 226 (276)
|.++.+. .++... . .....++|||+.| |+++ .+|+++|.++.+.++..
T Consensus 97 d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~--~~i~~~~~~~g~~~~~~ 150 (723)
T 1xfd_A 97 KIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE--NNIYYCAHVGKQAIRVV 150 (723)
T ss_dssp ESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET--TEEEEESSSSSCCEEEE
T ss_pred ECCCCce-EeccCCccccccccccEECCCCCEEEEEEC--CeEEEEECCCCceEEEe
Confidence 9998876 444322 1 1234588999876 5566 68999999998775443
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.019 Score=57.40 Aligned_cols=170 Identities=9% Similarity=-0.040 Sum_probs=105.2
Q ss_pred eEEEEEEecCCCCCceEEEEecC--CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecC-CCceEEEEEEeC---CEEEEEE
Q 023864 93 IQVVNEFPHDPRAFTQGLLYAEN--DTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLLG---EKLFQVT 166 (276)
Q Consensus 93 ~~Vv~~~Phd~~aFTQGL~~~~d--g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~-~~~FgEGit~~g---~~LyqlT 166 (276)
.+.+.++.. ...-+..+.|+++ +.++.+++ .+..|+.||+.+++......+. ...--..+++.. +.++...
T Consensus 43 ~~~~~~l~~-h~~~V~~l~~s~~~~~~~l~s~s--~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sg 119 (753)
T 3jro_A 43 HKLIDTLTG-HEGPVWRVDWAHPKFGTILASCS--YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVA 119 (753)
T ss_dssp EEEEEEECC-CSSCEEEEEECCTTSCSEEEEEE--TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEE
T ss_pred CccceeccC-CcCceEEEEecCCCCCCEEEEEe--CCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEE
Confidence 355666642 2455679999877 77777766 6788999999999743333222 122234555543 4566666
Q ss_pred eeCCEEEEEeCCCCcEEEEEec--CCCCeeE--Eee-------------CCCEEEEECCCceEEEEcCCCCcEEEEEEee
Q 023864 167 WLQKTGFIYDQNNLNKLEEFTH--QMKDGWG--LAT-------------DGKVLFGSDGSSMLYQIDPQTLKVIRKDIVR 229 (276)
Q Consensus 167 wk~~~v~V~D~~tlk~i~~~~~--~~~EGWG--LT~-------------Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~ 229 (276)
-.++.+.+||..+.+....... ....-.. +.+ |++.|+....+..|.++|..+.+....+...
T Consensus 120 s~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~ 199 (753)
T 3jro_A 120 SSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST 199 (753)
T ss_dssp ETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEE
T ss_pred eCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeee
Confidence 6889999999987743322221 1111122 334 5788888777888999998877543333222
Q ss_pred eCCEeeeeeeeeEEE-C---CEEEEEeCCCCCeEEEEeCCCC
Q 023864 230 YKGREVRNLNELEFI-K---GEVWANVWQVWPCIPYAYLQAF 267 (276)
Q Consensus 230 ~~g~pv~~lNELE~i-d---G~lyANvw~s~d~I~vIDp~T~ 267 (276)
..++. ..++-+.+. + |.+.+..... ..|.+.|..++
T Consensus 200 ~~~h~-~~V~~l~~sp~~~~~~~l~s~s~D-g~I~iwd~~~~ 239 (753)
T 3jro_A 200 LEGHS-DWVRDVAWSPTVLLRSYLASVSQD-RTCIIWTQDNE 239 (753)
T ss_dssp ECCCS-SCEEEEEECCCCSSSEEEEEEESS-SCEEEEEESSS
T ss_pred ecCCC-CcEEEEEeccCCCCCCEEEEEecC-CEEEEecCCCC
Confidence 22221 134455565 3 6777777677 88999998885
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.008 Score=53.04 Aligned_cols=115 Identities=11% Similarity=0.104 Sum_probs=80.1
Q ss_pred EEEEecCCEEEEEcCCCC----CCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeC-----CEEEEEeCCC
Q 023864 109 GLLYAENDTLFESTGLYG----RSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ-----KTGFIYDQNN 179 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg----~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~-----~~v~V~D~~t 179 (276)
..+.. +++||.-.|... .+.+.+||+++.+-....++|...++-+++..+++||++-=.+ +.+.+||+.+
T Consensus 143 ~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~ 221 (315)
T 4asc_A 143 TVLSH-MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITD 221 (315)
T ss_dssp EEEEE-TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTT
T ss_pred eEEEE-CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCC
Confidence 44454 579998777411 3679999999998766667776666667888899999996543 4789999987
Q ss_pred CcE--EEEEecCCCCeeEEeeCCCEEEEECCC---------------ceEEEEcCCCCcEEEE
Q 023864 180 LNK--LEEFTHQMKDGWGLATDGKVLFGSDGS---------------SMLYQIDPQTLKVIRK 225 (276)
Q Consensus 180 lk~--i~~~~~~~~EGWGLT~Dg~~L~vSDGS---------------~~L~viDp~t~~vi~~ 225 (276)
.+- +...+.+ ..+-+++.-++.||+--|. +.++++|+++.+-...
T Consensus 222 ~~W~~~~~~p~~-r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 222 NKWAPFEAFPQE-RSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp TEEEEECCCSSC-CBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred CeEEECCCCCCc-ccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 643 3333443 4555666556677775432 4689999999876544
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0051 Score=56.44 Aligned_cols=159 Identities=8% Similarity=-0.022 Sum_probs=97.2
Q ss_pred EecCCCCCceEEEEecC-CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC-CceEEEEEEe--CCEEEEEEeeCCEEEE
Q 023864 99 FPHDPRAFTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQMEG-SYFGEGLTLL--GEKLFQVTWLQKTGFI 174 (276)
Q Consensus 99 ~Phd~~aFTQGL~~~~d-g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~-~~FgEGit~~--g~~LyqlTwk~~~v~V 174 (276)
-||+ ..+..|+|+|. +.++.+++ .+..|+.||+++++......+.. .---.+|++. ++.++...-.++++.+
T Consensus 116 ~~~~--~~V~~l~~~P~~~~~lasGs--~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 116 APFD--RRATSLAWHPTHPSTVAVGS--KGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp EECS--SCEEEEEECSSCTTCEEEEE--TTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred CCCC--CCEEEEEEeCCCCCEEEEEe--CCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence 3664 34679999984 56666555 66789999999887544444332 1112356664 4455555567899999
Q ss_pred EeCCCCcEEEEEecCC----CCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CC-EE
Q 023864 175 YDQNNLNKLEEFTHQM----KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EV 248 (276)
Q Consensus 175 ~D~~tlk~i~~~~~~~----~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG-~l 248 (276)
||.++........... -..+.+.+||+.|+..+....|.++|..+.. +.++. ++. ..++-+.+. ++ .+
T Consensus 192 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~-~~~~~----~h~-~~v~~v~~~p~~~~~ 265 (435)
T 4e54_B 192 QDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-LWNLR----MHK-KKVTHVALNPCCDWF 265 (435)
T ss_dssp EETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB-CCCSB----CCS-SCEEEEEECTTCSSE
T ss_pred eeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce-eEEEe----ccc-ceEEeeeecCCCceE
Confidence 9987654332222211 1345678899999998888899999986533 22221 111 134455565 33 35
Q ss_pred EEEeCCCCCeEEEEeCCCCc
Q 023864 249 WANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 249 yANvw~s~d~I~vIDp~T~~ 268 (276)
+|....+ ..|.+-|..+++
T Consensus 266 ~~s~s~d-~~v~iwd~~~~~ 284 (435)
T 4e54_B 266 LATASVD-QTVKIWDLRQVR 284 (435)
T ss_dssp EEEEETT-SBCCEEETTTCC
T ss_pred EEEecCc-ceeeEEeccccc
Confidence 6555455 677777776643
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.02 Score=59.15 Aligned_cols=99 Identities=17% Similarity=0.127 Sum_probs=63.6
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEE--eCCEEEEEEeeC---------CEE
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL--LGEKLFQVTWLQ---------KTG 172 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~--~g~~LyqlTwk~---------~~v 172 (276)
......+.|+|||+.+.+++ ....|+.||+++|++.....-....+ .++++ ++..|....... +.+
T Consensus 378 ~~~~~~~~~SpDG~~la~~~--~~~~v~~~d~~tg~~~~~~~~~~~~v-~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i 454 (1045)
T 1k32_A 378 LGNVFAMGVDRNGKFAVVAN--DRFEIMTVDLETGKPTVIERSREAMI-TDFTISDNSRFIAYGFPLKHGETDGYVMQAI 454 (1045)
T ss_dssp CCSEEEEEECTTSSEEEEEE--TTSEEEEEETTTCCEEEEEECSSSCC-CCEEECTTSCEEEEEEEECSSTTCSCCEEEE
T ss_pred ccceeeeEECCCCCEEEEEC--CCCeEEEEECCCCceEEeccCCCCCc-cceEECCCCCeEEEEecCccccccCCCCCeE
Confidence 34567899999987554444 45699999999999866653232221 23444 455665555443 699
Q ss_pred EEEeCCCCcEEEEEecCCCC--eeEEeeCCCEEEEE
Q 023864 173 FIYDQNNLNKLEEFTHQMKD--GWGLATDGKVLFGS 206 (276)
Q Consensus 173 ~V~D~~tlk~i~~~~~~~~E--GWGLT~Dg~~L~vS 206 (276)
+++|.++.+ +.++.-.... ...+++||+.|+..
T Consensus 455 ~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~ 489 (1045)
T 1k32_A 455 HVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYL 489 (1045)
T ss_dssp EEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEE
T ss_pred EEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEE
Confidence 999999877 4444322112 23478899988764
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.085 Score=49.92 Aligned_cols=155 Identities=14% Similarity=0.032 Sum_probs=94.7
Q ss_pred CEEEEEcCCCCCCeEEEEeC-CCCcEEEEeecCC-CceEEEEEEe--CCEEEEEEeeCCEEEEEeCCCCcEEEEEecCC-
Q 023864 116 DTLFESTGLYGRSSVRRVAL-ETGKVEAINQMEG-SYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQM- 190 (276)
Q Consensus 116 g~LyeStG~yg~S~I~~iDl-~tgkv~~~~~l~~-~~FgEGit~~--g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~- 190 (276)
|+|.-+.+.--+..|+.|++ ++|+.+....+-. ..-..-++.. ++.+.+-.-.++++-++|.+|.+.++++.-..
T Consensus 145 g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~ 224 (356)
T 2w18_A 145 RRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDS 224 (356)
T ss_dssp TEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC-
T ss_pred CcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCc
Confidence 44443322224778888888 5587766654332 2222334442 35777777899999999999999999996320
Q ss_pred ----CCeeEEeeCCCEEEE-----------EC-CCceEEEEcCCCCcEEEEEEee-eCCEeeeeeeeeEEECCEEEEEeC
Q 023864 191 ----KDGWGLATDGKVLFG-----------SD-GSSMLYQIDPQTLKVIRKDIVR-YKGREVRNLNELEFIKGEVWANVW 253 (276)
Q Consensus 191 ----~EGWGLT~Dg~~L~v-----------SD-GS~~L~viDp~t~~vi~~I~V~-~~g~pv~~lNELE~idG~lyANvw 253 (276)
-....+++||+.+.. |- ...+|..+|+++.+.++...+. .+|+....+ +-.+ +|.+.|.--
T Consensus 225 ~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~l-sg~~-sg~~lASgS 302 (356)
T 2w18_A 225 YQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFL-EGDV-KDHCAAAIL 302 (356)
T ss_dssp --CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEE-EEEE-ETTEEEEEE
T ss_pred ceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeE-cccc-CCCEEEEEc
Confidence 012368899988754 11 2568888999999888765543 234321111 1111 134556655
Q ss_pred CCCCeEEEEeCCCCcEEEEEE
Q 023864 254 QVWPCIPYAYLQAFGSSLVYV 274 (276)
Q Consensus 254 ~s~d~I~vIDp~T~~v~l~~~ 274 (276)
.+ ..|-+-|.++|+.+ .++
T Consensus 303 ~D-gTIkIWDl~tGk~l-~tL 321 (356)
T 2w18_A 303 TS-GTIAIWDLLLGQCT-ALL 321 (356)
T ss_dssp TT-SCEEEEETTTCSEE-EEE
T ss_pred CC-CcEEEEECCCCcEE-EEe
Confidence 56 78888999996643 443
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.038 Score=49.29 Aligned_cols=148 Identities=12% Similarity=0.111 Sum_probs=92.2
Q ss_pred CCEEEEEcCCCCCCeEEEEeCCC--CcEEEEeecC-CCceEEEEEEeCCEEEEEEee----------CCEEEEEeCCCCc
Q 023864 115 NDTLFESTGLYGRSSVRRVALET--GKVEAINQME-GSYFGEGLTLLGEKLFQVTWL----------QKTGFIYDQNNLN 181 (276)
Q Consensus 115 dg~LyeStG~yg~S~I~~iDl~t--gkv~~~~~l~-~~~FgEGit~~g~~LyqlTwk----------~~~v~V~D~~tlk 181 (276)
+++||.-.| +..+.+.+||+.+ .+-....++| ....+-+++..+++||++-=. -+.+.+||+.+.+
T Consensus 19 ~~~iyv~GG-~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~ 97 (357)
T 2uvk_A 19 NDTVYIGLG-SAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97 (357)
T ss_dssp TTEEEEECG-GGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred CCEEEEEeC-cCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence 689999766 5667899999984 6665555677 444556778889999997433 3679999998765
Q ss_pred E--EEEEe-cCCCCeeEEeeCCCEEEEECC----------------------------------------CceEEEEcCC
Q 023864 182 K--LEEFT-HQMKDGWGLATDGKVLFGSDG----------------------------------------SSMLYQIDPQ 218 (276)
Q Consensus 182 ~--i~~~~-~~~~EGWGLT~Dg~~L~vSDG----------------------------------------S~~L~viDp~ 218 (276)
- +...+ .+ ..+-+++..+..||+--| .+.++++|++
T Consensus 98 W~~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~ 176 (357)
T 2uvk_A 98 WVKLMSHAPMG-MAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPS 176 (357)
T ss_dssp EEECSCCCSSC-CSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETT
T ss_pred EEECCCCCCcc-cccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCC
Confidence 3 33333 33 355555556667777544 2689999999
Q ss_pred CCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeC------CCCCeEEEEeC--CCCc
Q 023864 219 TLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVW------QVWPCIPYAYL--QAFG 268 (276)
Q Consensus 219 t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw------~s~d~I~vIDp--~T~~ 268 (276)
+.+-...-......+ .---+...+++||+-=. .+ +.+.+.|+ ++.+
T Consensus 177 ~~~W~~~~~~p~~~~---~~~~~~~~~~~iyv~GG~~~~~~~~-~~v~~~d~d~~~~~ 230 (357)
T 2uvk_A 177 TQQWSYAGESPWYGT---AGAAVVNKGDKTWLINGEAKPGLRT-DAVFELDFTGNNLK 230 (357)
T ss_dssp TTEEEEEEECSSCCC---BSCEEEEETTEEEEECCEEETTEEC-CCEEEEECC---CE
T ss_pred CCcEEECCCCCCCCc---ccccEEEECCEEEEEeeecCCCccc-CceEEEEecCCCCc
Confidence 987654322211101 10124456777775421 25 67777764 6643
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.029 Score=48.62 Aligned_cols=115 Identities=6% Similarity=0.020 Sum_probs=74.6
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCC--cEEEEeecCCCceEEEEEEeC---CEEEEEEeeCCEEEEEeCC
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETG--KVEAINQMEGSYFGEGLTLLG---EKLFQVTWLQKTGFIYDQN 178 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tg--kv~~~~~l~~~~FgEGit~~g---~~LyqlTwk~~~v~V~D~~ 178 (276)
...+..+.|++||+++.+++ .+..|+.||++++ +.+.... +..---..+++.. +++....=.++++.++|.+
T Consensus 9 ~~~V~~~~~s~~g~~las~s--~D~~v~iw~~~~~~~~~~~~l~-gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~ 85 (297)
T 2pm7_B 9 NEMIHDAVMDYYGKRMATCS--SDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEE 85 (297)
T ss_dssp SSCEEEEEECTTSSEEEEEE--TTSCEEEEEBCSSCBCCCEEEC-CCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBS
T ss_pred cCceEEEEECCCCCEEEEEe--CCCEEEEEecCCCCcEEEEEEc-cccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcC
Confidence 44567899999998887777 6788999999754 4433322 1111123555531 4555556678999999998
Q ss_pred CCc--EEEEEecCCC--CeeEEeeC--CCEEEEECCCceEEEEcCCCCc
Q 023864 179 NLN--KLEEFTHQMK--DGWGLATD--GKVLFGSDGSSMLYQIDPQTLK 221 (276)
Q Consensus 179 tlk--~i~~~~~~~~--EGWGLT~D--g~~L~vSDGS~~L~viDp~t~~ 221 (276)
+.+ .+.++..... ....+.++ |+.|.....+..|.++|..+.+
T Consensus 86 ~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~ 134 (297)
T 2pm7_B 86 NGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENG 134 (297)
T ss_dssp SSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSS
T ss_pred CCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCC
Confidence 764 4445532111 22345566 7788877778899999987653
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.035 Score=55.37 Aligned_cols=154 Identities=12% Similarity=0.047 Sum_probs=100.0
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC----CceEEEEEEe-CCEEEEEEeeCCEEEEEeCC
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG----SYFGEGLTLL-GEKLFQVTWLQKTGFIYDQN 178 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~----~~FgEGit~~-g~~LyqlTwk~~~v~V~D~~ 178 (276)
...+..+..+++|+||.+|. .-|.++|++++++......+. ..+.-.+..+ +++||+.|..++ ++.||++
T Consensus 449 ~~~v~~i~~d~~g~lwigt~----~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~ 523 (781)
T 3v9f_A 449 LLDVRVFYEDKNKKIWIGTH----AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPD 523 (781)
T ss_dssp CCCEEEEEECTTSEEEEEET----TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTT
T ss_pred CCeEEEEEECCCCCEEEEEC----CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCC
Confidence 45667888888899999875 469999999987654433220 2234466665 589999998555 7889987
Q ss_pred CCcEEEEEecC----CCCeeEEeeCC-CEEEEECCCceE-EEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEE
Q 023864 179 NLNKLEEFTHQ----MKDGWGLATDG-KVLFGSDGSSML-YQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWAN 251 (276)
Q Consensus 179 tlk~i~~~~~~----~~EGWGLT~Dg-~~L~vSDGS~~L-~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyAN 251 (276)
+.+ ...+... ...=..+..|. ..||++-. +-| +.+|+++.+.. .... .+|-+-..++.+... +|.||+.
T Consensus 524 ~~~-~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~-~~~~-~~gl~~~~i~~i~~d~~g~lW~~ 599 (781)
T 3v9f_A 524 MQL-VRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQ-VFQR-KEGLPNTHIRAISEDKNGNIWAS 599 (781)
T ss_dssp CCE-EEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCE-EECG-GGTCSCCCCCEEEECSSSCEEEE
T ss_pred CCe-EEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEE-Eccc-cCCCCCceEEEEEECCCCCEEEE
Confidence 754 3445422 11224566543 46777543 567 99999987643 2222 345444445555444 6899988
Q ss_pred eCCCCCeEEEEeCCCCcE
Q 023864 252 VWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 252 vw~s~d~I~vIDp~T~~v 269 (276)
- . +-|.++||++++.
T Consensus 600 t--~-~Gl~~~~~~~~~~ 614 (781)
T 3v9f_A 600 T--N-TGISCYITSKKCF 614 (781)
T ss_dssp C--S-SCEEEEETTTTEE
T ss_pred c--C-CceEEEECCCCce
Confidence 6 3 6699999998543
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.055 Score=50.65 Aligned_cols=151 Identities=15% Similarity=0.187 Sum_probs=89.0
Q ss_pred CceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC-----CceEEEEEEe-----CCEEEEEE--eeCCEEE
Q 023864 106 FTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG-----SYFGEGLTLL-----GEKLFQVT--WLQKTGF 173 (276)
Q Consensus 106 FTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~-----~~FgEGit~~-----g~~LyqlT--wk~~~v~ 173 (276)
...||+|.+||+||++.- ....|++++.++|+......++. .--.-||+++ ++.||+.- ...+++.
T Consensus 33 ~P~~ia~~pdG~llVter--~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 33 SPWGLAPLPGGDLLVSSR--DEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp SEEEEEECTTSCEEEEET--TTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CceEEEEcCCCcEEEEEe--cCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 345999999999998632 56789999988887643333331 1123488986 57899863 2457788
Q ss_pred EEeCCC----------CcE-EEEEecCCCCe----eEEeeCCCEEEEECC--------------CceEEEEcCCCCcEEE
Q 023864 174 IYDQNN----------LNK-LEEFTHQMKDG----WGLATDGKVLFGSDG--------------SSMLYQIDPQTLKVIR 224 (276)
Q Consensus 174 V~D~~t----------lk~-i~~~~~~~~EG----WGLT~Dg~~L~vSDG--------------S~~L~viDp~t~~vi~ 224 (276)
.+.... .+. +..++.. ..+ ..+.+|| .||++-| ..+|.-||+..- +-.
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~-~~H~g~~l~fgpDG-~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~-ip~ 187 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKG-VIHNGGRIAFGPDK-MLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE-PAP 187 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCC-SSCCCCCEEECTTS-CEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS-BCT
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCC-CCccCccccCCCCC-CEEEEECCCCCCccccCCCCCCCEEEEEeCCCC-ccC
Confidence 776543 222 2334432 223 3356787 6999865 247777776531 100
Q ss_pred -----EEEeeeCCEeeeeeeeeEEE-CCEEEEEeCCC--CCeEEEEe
Q 023864 225 -----KDIVRYKGREVRNLNELEFI-KGEVWANVWQV--WPCIPYAY 263 (276)
Q Consensus 225 -----~I~V~~~g~pv~~lNELE~i-dG~lyANvw~s--~d~I~vID 263 (276)
...|-..| +.|++.|.+. +|.||+.--.. +|.|-+|-
T Consensus 188 ~nPf~~~~i~a~G--~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~ 232 (347)
T 3das_A 188 GNPFPGSPVYSYG--HRNVQGLAWDDKQRLFASEFGQDTWDELNAIK 232 (347)
T ss_dssp TCSSTTCCEEEBC--CSBCCEEEECTTCCEEEEECCSSSCEEEEEEC
T ss_pred CCCCCCCeEEeeC--CCCcceEEECCCCCEEEEecCCCCCceeeEEc
Confidence 00111112 2467778877 68899766443 14565553
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.011 Score=51.81 Aligned_cols=124 Identities=13% Similarity=0.097 Sum_probs=73.9
Q ss_pred EEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCC-ceEEEEEEe---CCEEEEEEeeCC
Q 023864 95 VVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGS-YFGEGLTLL---GEKLFQVTWLQK 170 (276)
Q Consensus 95 Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~-~FgEGit~~---g~~LyqlTwk~~ 170 (276)
+++++-......+..+.|++||+++.+++ .+..|+.||+++++......+..+ ---..+++. ++.+...-=.++
T Consensus 4 ~~~~~~~~H~~~V~~v~~s~~g~~lasgs--~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~ 81 (316)
T 3bg1_A 4 VINTVDTSHEDMIHDAQMDYYGTRLATCS--SDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDR 81 (316)
T ss_dssp ----------CCEEEEEECGGGCEEEEEE--TTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTS
T ss_pred eeeeecccccCeEEEeeEcCCCCEEEEEe--CCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCC
Confidence 44444333356678999999998887777 778999999998864222223211 112345553 134444455689
Q ss_pred EEEEEeCCCCc--EEEEEe-cC-CCCeeEEeeC--CCEEEEECCCceEEEEcCCCC
Q 023864 171 TGFIYDQNNLN--KLEEFT-HQ-MKDGWGLATD--GKVLFGSDGSSMLYQIDPQTL 220 (276)
Q Consensus 171 ~v~V~D~~tlk--~i~~~~-~~-~~EGWGLT~D--g~~L~vSDGS~~L~viDp~t~ 220 (276)
++.+||..+.+ .+.++. +. .-....+.+| |..|.....+..|.++|..+.
T Consensus 82 ~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~ 137 (316)
T 3bg1_A 82 KVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGE 137 (316)
T ss_dssp CEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSS
T ss_pred EEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCC
Confidence 99999998763 445553 11 1234456677 667777666778888887765
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.039 Score=54.77 Aligned_cols=158 Identities=13% Similarity=0.044 Sum_probs=91.9
Q ss_pred CCceEEEEecCCE-EEEEcCCC--CCCeEEEEeCCCC--c-EEEEeecCCCceEEEEEEeCCEEEEEEee---CCEEEEE
Q 023864 105 AFTQGLLYAENDT-LFESTGLY--GRSSVRRVALETG--K-VEAINQMEGSYFGEGLTLLGEKLFQVTWL---QKTGFIY 175 (276)
Q Consensus 105 aFTQGL~~~~dg~-LyeStG~y--g~S~I~~iDl~tg--k-v~~~~~l~~~~FgEGit~~g~~LyqlTwk---~~~v~V~ 175 (276)
.|..++.+++||+ |+.+.... +.+.|..+|++++ + . ..+.-+....-.-+..++++||.++.. +.+++++
T Consensus 268 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~ 346 (741)
T 1yr2_A 268 KRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPV-TALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRV 346 (741)
T ss_dssp TCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCC-EEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEE
T ss_pred eEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCccc-EEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEE
Confidence 3567999999985 55444322 4679999999988 4 3 232222211111245678999999985 4579999
Q ss_pred eCCCCc-EEEEE-ecCCCCe-eEEeeCCCEEEEE---CCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CC-E
Q 023864 176 DQNNLN-KLEEF-THQMKDG-WGLATDGKVLFGS---DGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-E 247 (276)
Q Consensus 176 D~~tlk-~i~~~-~~~~~EG-WGLT~Dg~~L~vS---DGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG-~ 247 (276)
|.++.+ ...++ +.. .+- .+++.+++.|+++ ||..+|+++|+. .+..+.+.....+. +..+.+. || +
T Consensus 347 d~~~~~~~~~~l~~~~-~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~-g~~~~~l~~~~~~~----v~~~~~s~d~~~ 420 (741)
T 1yr2_A 347 DLSGSTPRFDTVVPES-KDNLESVGIAGNRLFASYIHDAKSQVLAFDLD-GKPAGAVSLPGIGS----ASGLSGRPGDRH 420 (741)
T ss_dssp ECSSSSCEEEEEECCC-SSEEEEEEEEBTEEEEEEEETTEEEEEEEETT-SCEEEECBCSSSCE----EEEEECCBTCSC
T ss_pred eCCCCccccEEEecCC-CCeEEEEEEECCEEEEEEEECCEEEEEEEeCC-CCceeeccCCCCeE----EEEeecCCCCCE
Confidence 998852 33333 322 111 1344446666653 588899999975 44555554322222 1222221 34 4
Q ss_pred EEEE--eCCCCCeEEEEeCCCCcE
Q 023864 248 VWAN--VWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 248 lyAN--vw~s~d~I~vIDp~T~~v 269 (276)
|+.. -+.+...|.++|.++++.
T Consensus 421 l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 421 AYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp EEEEEEETTEEEEEEEEETTTTEE
T ss_pred EEEEEcCCCCCCEEEEEECCCCcE
Confidence 5533 344424788999988764
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.034 Score=50.51 Aligned_cols=140 Identities=8% Similarity=0.010 Sum_probs=91.0
Q ss_pred CEEEEEcCCC-----------CCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEe---eCCEEEEEeCCCCc
Q 023864 116 DTLFESTGLY-----------GRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW---LQKTGFIYDQNNLN 181 (276)
Q Consensus 116 g~LyeStG~y-----------g~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTw---k~~~v~V~D~~tlk 181 (276)
+.||.+.-.. .+..|++++++.++...-..- .+--+++.+++||-..+ .+..++..|.+.-.
T Consensus 65 ~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~----~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~ 140 (302)
T 3s25_A 65 NYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD----PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE 140 (302)
T ss_dssp SEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS----CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCC
T ss_pred CEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC----CccEEEEeCCEEEEEeecCCCCceEEEEECCCCC
Confidence 5777765432 256899999998863322221 23357889999999883 56788889987543
Q ss_pred EEEEEecCCCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCCCCeEE
Q 023864 182 KLEEFTHQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQVWPCIP 260 (276)
Q Consensus 182 ~i~~~~~~~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s~d~I~ 260 (276)
..++.-...+ .+.++|+.||-+| |..+|++++.+..... +| . .+.... + +-..+|+||-.-|.....|.
T Consensus 141 -~~~lt~~~~~--~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~-~l-~-~~~~~~--~--~~P~g~~iy~t~~~~~~~I~ 210 (302)
T 3s25_A 141 -KKKIKNHYLF--TCNTSDRYFYYNNPKNGQLYRYDTASQSEA-LF-Y-DCNCYK--P--VVLDDTNVYYMDVNRDNAIV 210 (302)
T ss_dssp -CEEEESSCCC--CSEEETTEEEEECTTTCCEEEEETTTTEEE-EE-E-CSCEEE--E--EEEETTEEEEEEGGGTTEEE
T ss_pred -eEEEeCCCce--EeeEECCEEEEEeCCCceEEEEECCCCCEE-EE-e-CCCccc--e--eeecCCEEEEEEcCCCcEEE
Confidence 3444322112 3578999998766 7999999998876543 34 2 222211 1 11368888877776525899
Q ss_pred EEeCCCCcE
Q 023864 261 YAYLQAFGS 269 (276)
Q Consensus 261 vIDp~T~~v 269 (276)
++|+.....
T Consensus 211 ~~~ldG~~~ 219 (302)
T 3s25_A 211 HVNINNPNP 219 (302)
T ss_dssp EECSSSCCC
T ss_pred EEECCCCCe
Confidence 999887653
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.028 Score=56.27 Aligned_cols=152 Identities=13% Similarity=0.060 Sum_probs=95.3
Q ss_pred CCceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEee----cCCCceEEEEEEe-CCEEEEEEeeCCEEEEEeCC
Q 023864 105 AFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQ----MEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQN 178 (276)
Q Consensus 105 aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~----l~~~~FgEGit~~-g~~LyqlTwk~~~v~V~D~~ 178 (276)
..+..+..+++|+ ||.+|- + .-|.++|.+++++..-.. ++.. .--.+..+ +++||+.|. +-+++||++
T Consensus 406 ~~v~~i~~d~~g~~lWigt~--~-~Gl~~~d~~~~~~~~~~~~~~~l~~~-~v~~i~~d~~g~lwigt~--~Gl~~~~~~ 479 (795)
T 4a2l_A 406 NNIKAVYVDEKKSLVYIGTH--A-GGLSILHRNSGQVENFNQRNSQLVNE-NVYAILPDGEGNLWLGTL--SALVRFNPE 479 (795)
T ss_dssp SCEEEEEEETTTTEEEEEET--T-TEEEEEETTTCCEEEECTTTSCCSCS-CEEEEEECSSSCEEEEES--SCEEEEETT
T ss_pred ccEEEEEEcCCCCEEEEEeC--c-CceeEEeCCCCcEEEeecCCCCcCCC-eeEEEEECCCCCEEEEec--CceeEEeCC
Confidence 4467888888898 998764 2 359999999998754322 2222 23356665 589999997 458999998
Q ss_pred CCcEEEEEecC-------CCCeeEEeeCC-CEEEEECCCceEEEEcCCCCcEEEEEEe--eeCCEeeeeeeeeEEE-CCE
Q 023864 179 NLNKLEEFTHQ-------MKDGWGLATDG-KVLFGSDGSSMLYQIDPQTLKVIRKDIV--RYKGREVRNLNELEFI-KGE 247 (276)
Q Consensus 179 tlk~i~~~~~~-------~~EGWGLT~Dg-~~L~vSDGS~~L~viDp~t~~vi~~I~V--~~~g~pv~~lNELE~i-dG~ 247 (276)
+.+.. .+... ...=..+..|. ..||++.. +-|+.+|+++.+. .+.. ..++.+-..++-+... +|.
T Consensus 480 ~~~~~-~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~ 555 (795)
T 4a2l_A 480 QRSFT-TIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGI 555 (795)
T ss_dssp TTEEE-ECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSC
T ss_pred CCeEE-EccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCC
Confidence 76542 23211 01123455543 46777554 6799999988765 2221 1122333345555443 689
Q ss_pred EEEEeCCCCCeEEEEeCCCCcE
Q 023864 248 VWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 248 lyANvw~s~d~I~vIDp~T~~v 269 (276)
||+.-. +-|.++|+++++.
T Consensus 556 lWigT~---~Gl~~~d~~~~~~ 574 (795)
T 4a2l_A 556 IWVGTR---EGFYCFNEKDKQI 574 (795)
T ss_dssp EEEEES---SCEEEEETTTTEE
T ss_pred EEEEeC---CCceeECCCCCcE
Confidence 998764 4599999998543
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0044 Score=61.14 Aligned_cols=127 Identities=10% Similarity=0.033 Sum_probs=81.1
Q ss_pred EEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe-CCEEEEEEe-eC-----
Q 023864 97 NEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTW-LQ----- 169 (276)
Q Consensus 97 ~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~-g~~LyqlTw-k~----- 169 (276)
...|.....|..|..+..||+||...| +..+.+.+||+.+++-....+++.....-+++.. +++||++-= .+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~g~lyv~GG-~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~ 313 (656)
T 1k3i_A 235 TVTVTKHDMFCPGISMDGNGQIVVTGG-NDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFE 313 (656)
T ss_dssp EEEECSCCCSSCEEEECTTSCEEEECS-SSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCC
T ss_pred cccCCCCCCccccccCCCCCCEEEeCC-CCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCccc
Confidence 445554566777888888899999777 4566899999999987665566654444566776 899999865 22
Q ss_pred CEEEEEeCCCCcEEEE-----EecCCCCeeEEeeCCCEEEE----------ECCCceEEEEcCCCCcEEE
Q 023864 170 KTGFIYDQNNLNKLEE-----FTHQMKDGWGLATDGKVLFG----------SDGSSMLYQIDPQTLKVIR 224 (276)
Q Consensus 170 ~~v~V~D~~tlk~i~~-----~~~~~~EGWGLT~Dg~~L~v----------SDGS~~L~viDp~t~~vi~ 224 (276)
+.+.+||+.+.+-... .+......-++...+..+|+ .+..+.+..+|+++.+...
T Consensus 314 ~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~ 383 (656)
T 1k3i_A 314 KNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK 383 (656)
T ss_dssp CCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE
T ss_pred ccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceee
Confidence 6799999987654321 11111000011112222222 2346789999999887654
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.052 Score=51.69 Aligned_cols=153 Identities=14% Similarity=0.107 Sum_probs=103.2
Q ss_pred EEEEEEecC-----CCCCceEEEEe-c-------CCEEEEEcCCCCCCeEEEEeCCCCcEEEEe---ecC----------
Q 023864 94 QVVNEFPHD-----PRAFTQGLLYA-E-------NDTLFESTGLYGRSSVRRVALETGKVEAIN---QME---------- 147 (276)
Q Consensus 94 ~Vv~~~Phd-----~~aFTQGL~~~-~-------dg~LyeStG~yg~S~I~~iDl~tgkv~~~~---~l~---------- 147 (276)
+++++|+.+ +..|.+.|.++ - ++..|.+.- +...|.+||+++|+.-+.. ..+
T Consensus 136 ~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~--~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G 213 (381)
T 3q6k_A 136 PEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNF--LRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGG 213 (381)
T ss_dssp CEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEET--TTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETT
T ss_pred eeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcC--CCCcEEEEECCCCcEEEEccCCCccccCcceEECC
Confidence 889998764 45677899998 2 357898754 7789999999999754432 111
Q ss_pred ------CCceEEEEEEe----CCEEEEEEeeCCEEEEEeCC---------CCcEEEEEecCCCCeeEEeeC--CCEEEEE
Q 023864 148 ------GSYFGEGLTLL----GEKLFQVTWLQKTGFIYDQN---------NLNKLEEFTHQMKDGWGLATD--GKVLFGS 206 (276)
Q Consensus 148 ------~~~FgEGit~~----g~~LyqlTwk~~~v~V~D~~---------tlk~i~~~~~~~~EGWGLT~D--g~~L~vS 206 (276)
.+.||..|..+ +..||-..--+.+.|.+..+ ..+.+++-. +..+|-|++.| ...||.+
T Consensus 214 ~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg-~~s~~~~~~~D~~~G~ly~~ 292 (381)
T 3q6k_A 214 KEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRG-KYNDAIALAYDPKTKVIFFA 292 (381)
T ss_dssp EEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECC-TTCCEEEEEECTTTCEEEEE
T ss_pred EEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecC-CCCCcceEEEeCCCCeEEEE
Confidence 35554444334 56899888888899988743 223333332 12588888776 4789999
Q ss_pred C-CCceEEEEcCCC--C--cEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEe
Q 023864 207 D-GSSMLYQIDPQT--L--KVIRKDIVRYKGREVRNLNELEFI-KGEVWANV 252 (276)
Q Consensus 207 D-GS~~L~viDp~t--~--~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANv 252 (276)
+ ..+.|..+|+++ + +-. .+-+.+. .+..++.|-+. +|+||+..
T Consensus 293 ~~~~~aI~~w~~~~~~~~~~n~-~~l~~d~--~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 293 EANTKQVSCWNTQKMPLRMKNT-DVVYTSS--RFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp ESSSSEEEEEETTSCSBCGGGE-EEEEECT--TCCSEEEEEECTTSCEEEEE
T ss_pred eccCCeEEEEeCCCCccccCce-EEEEECC--CccccCeEEECCCCeEEEEE
Confidence 9 899999999986 2 112 2333332 45577777764 78899765
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.032 Score=56.12 Aligned_cols=151 Identities=6% Similarity=-0.033 Sum_probs=100.5
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCc----eEEEEEE--eCCEEEEEEeeCCEEEEEeC
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSY----FGEGLTL--LGEKLFQVTWLQKTGFIYDQ 177 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~----FgEGit~--~g~~LyqlTwk~~~v~V~D~ 177 (276)
..+...+.|+|||.++.+++ .+..|+.||.++ .+.... ...+ =...+++ +|+.|+..+ .++++-+||.
T Consensus 85 ~~~V~~vawSPdG~~LAs~s--~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs-~DGtVkIWd~ 158 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLS--NNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGN-EDGELQFFSI 158 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEE--TTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEE-TTSEEEEEEC
T ss_pred CCcEEEEEECCCCCEEEEEe--CCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEc-CCCEEEEEEC
Confidence 67889999999999887777 777899999654 444434 3221 1335555 345555554 5899999999
Q ss_pred CCCc-------EEEEEecC------CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcE---EEEEEeeeCCEeeeeeeee
Q 023864 178 NNLN-------KLEEFTHQ------MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKV---IRKDIVRYKGREVRNLNEL 241 (276)
Q Consensus 178 ~tlk-------~i~~~~~~------~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~v---i~~I~V~~~g~pv~~lNEL 241 (276)
.+.+ .+.+++.. .-.....+||| |..+-+++.|+++|.++.+. .+++. .++. ..+..+
T Consensus 159 ~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~---~~h~-~~V~sv 232 (588)
T 2j04_A 159 RKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ---NASR-RKITDL 232 (588)
T ss_dssp CCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE---CCCS-SCCCCE
T ss_pred CCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec---cccc-CcEEEE
Confidence 9876 36777522 11233356788 66666789999999988773 23332 1111 246677
Q ss_pred EEECCEEEEEeCCCCCeEEEEeCCCCcE
Q 023864 242 EFIKGEVWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 242 E~idG~lyANvw~s~d~I~vIDp~T~~v 269 (276)
.|.++.|-+.. . +.|.+.|.++++.
T Consensus 233 aFsg~~LASa~--~-~tIkLWd~~~~~~ 257 (588)
T 2j04_A 233 KIVDYKVVLTC--P-GYVHKIDLKNYSI 257 (588)
T ss_dssp EEETTEEEEEC--S-SEEEEEETTTTEE
T ss_pred EEECCEEEEEe--C-CeEEEEECCCCeE
Confidence 78854555443 5 7899999998665
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.14 Score=45.10 Aligned_cols=124 Identities=10% Similarity=0.060 Sum_probs=74.5
Q ss_pred EEEEEEecC-CCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCC-------cEEEEeecCCCceEEEEEEeC-CEEEE
Q 023864 94 QVVNEFPHD-PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETG-------KVEAINQMEGSYFGEGLTLLG-EKLFQ 164 (276)
Q Consensus 94 ~Vv~~~Phd-~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tg-------kv~~~~~l~~~~FgEGit~~g-~~Lyq 164 (276)
+.+..+... ...-+..+.|+|++.++.+++ .+..|+.||++++ +.+.... +..---..+++.. +++..
T Consensus 47 ~~~~~~~~~~h~~~v~~v~~sp~~~~las~s--~D~~v~iw~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~g~~la 123 (330)
T 2hes_X 47 TLIDVLDETAHKKAIRSVAWRPHTSLLAAGS--FDSTVSIWAKEESADRTFEMDLLAIIE-GHENEVKGVAWSNDGYYLA 123 (330)
T ss_dssp EEEEEECTTCCCSCEEEEEECTTSSEEEEEE--TTSCEEEEEC-------CCCEEEEEEC-----CEEEEEECTTSCEEE
T ss_pred EEEEEEecCCccCCEEEEEECCCCCEEEEEe--CCCcEEEEEcccCcCccccceeEEEEc-CCCCcEEEEEECCCCCEEE
Confidence 455555321 244567999999998877766 6789999998643 2222221 1111223556653 44455
Q ss_pred EEeeCCEEEEEeCCC----CcEEEEEecCCC--CeeEEeeCCCEEEEECCCceEEEEcCCCC
Q 023864 165 VTWLQKTGFIYDQNN----LNKLEEFTHQMK--DGWGLATDGKVLFGSDGSSMLYQIDPQTL 220 (276)
Q Consensus 165 lTwk~~~v~V~D~~t----lk~i~~~~~~~~--EGWGLT~Dg~~L~vSDGS~~L~viDp~t~ 220 (276)
..-.++++.+||..+ .+.+..+.-... ....+.+|++.|+....+..|.++|..+.
T Consensus 124 s~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~ 185 (330)
T 2hes_X 124 TCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDD 185 (330)
T ss_dssp EEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETT
T ss_pred EEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 555789999999842 345555542211 22335688988887766778888887655
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.019 Score=57.06 Aligned_cols=154 Identities=18% Similarity=0.206 Sum_probs=86.9
Q ss_pred ceEEEEecCCE-EEEEcCCCCC--CeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEEEEEeeCC------------
Q 023864 107 TQGLLYAENDT-LFESTGLYGR--SSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQK------------ 170 (276)
Q Consensus 107 TQGL~~~~dg~-LyeStG~yg~--S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~LyqlTwk~~------------ 170 (276)
..++.|+|||+ |..+...-|. ..|+++|+++|+.+.. .++...| .++++.. +.||.....+.
T Consensus 165 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~-~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~ 242 (741)
T 1yr2_A 165 LDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKF-SGLAWLGNDALLYSRFAEPKEGQAFQALNYN 242 (741)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEES-CCCEESTTSEEEEEECCCC--------CCCC
T ss_pred EEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCcee-ccEEEECCCEEEEEEecCcccccccccCCCC
Confidence 35789999986 3222211133 5799999999987553 2221111 2455543 56777665433
Q ss_pred -EEEEEeCCCCcEEEE--EecCC----CCeeEEeeCCCEEEE-E-CC---CceEEEEcCCCCcE--EEEEEeeeCCEeee
Q 023864 171 -TGFIYDQNNLNKLEE--FTHQM----KDGWGLATDGKVLFG-S-DG---SSMLYQIDPQTLKV--IRKDIVRYKGREVR 236 (276)
Q Consensus 171 -~v~V~D~~tlk~i~~--~~~~~----~EGWGLT~Dg~~L~v-S-DG---S~~L~viDp~t~~v--i~~I~V~~~g~pv~ 236 (276)
+++++|..+.+...+ +..+. -.+..+++||++|++ + ++ .+.|+++|.++... .+.+....++..
T Consensus 243 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~-- 320 (741)
T 1yr2_A 243 QTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQW-- 320 (741)
T ss_dssp CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCE--
T ss_pred CEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceE--
Confidence 589999887763222 22111 124457899998766 3 33 56999999987621 344443332211
Q ss_pred eeeeeEEECCEEEEEe-CC--CCCeEEEEeCCCC
Q 023864 237 NLNELEFIKGEVWANV-WQ--VWPCIPYAYLQAF 267 (276)
Q Consensus 237 ~lNELE~idG~lyANv-w~--s~d~I~vIDp~T~ 267 (276)
.. ..-.+++||..- -. . ..|.++|.+++
T Consensus 321 ~~--~~~dg~~l~~~s~~~~~~-~~l~~~d~~~~ 351 (741)
T 1yr2_A 321 DF--VDGVGDQLWFVSGDGAPL-KKIVRVDLSGS 351 (741)
T ss_dssp EE--EEEETTEEEEEECTTCTT-CEEEEEECSSS
T ss_pred EE--EeccCCEEEEEECCCCCC-CEEEEEeCCCC
Confidence 11 122355666433 21 2 46999998875
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.032 Score=55.66 Aligned_cols=154 Identities=14% Similarity=0.050 Sum_probs=95.0
Q ss_pred CCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEee--cCCCceEEEEEEe-CCEEEEEEeeCCEEEEEeCCCCc
Q 023864 105 AFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQ--MEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNLN 181 (276)
Q Consensus 105 aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~--l~~~~FgEGit~~-g~~LyqlTwk~~~v~V~D~~tlk 181 (276)
..+..|..+.+|.||.+|- + .-|.++|.+++++..-.. ++.. .--.+..+ +++||+.|. +-+++||+++.+
T Consensus 407 ~~v~~i~~d~~g~lWigt~--~-~Gl~~~~~~~~~~~~~~~~~~~~~-~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~ 480 (781)
T 3v9f_A 407 NSVLCSLKDSEGNLWFGTY--L-GNISYYNTRLKKFQIIELEKNELL-DVRVFYEDKNKKIWIGTH--AGVFVIDLASKK 480 (781)
T ss_dssp SBEEEEEECTTSCEEEEET--T-EEEEEECSSSCEEEECCSTTTCCC-CEEEEEECTTSEEEEEET--TEEEEEESSSSS
T ss_pred cceEEEEECCCCCEEEEec--c-CCEEEEcCCCCcEEEeccCCCCCC-eEEEEEECCCCCEEEEEC--CceEEEeCCCCe
Confidence 4456788887899998763 2 469999999998744321 2222 22356665 589999997 569999998765
Q ss_pred EEEEEecC-----CCCeeEEeeCC-CEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCC
Q 023864 182 KLEEFTHQ-----MKDGWGLATDG-KVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQ 254 (276)
Q Consensus 182 ~i~~~~~~-----~~EGWGLT~Dg-~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~ 254 (276)
...-...+ ...-..+..|. ..||++-..+-|+.+|+++.+... +.. .++.+-..++-+... +|.||+.-.
T Consensus 481 ~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~-~~~-~~~l~~~~i~~i~~d~~g~lWi~T~- 557 (781)
T 3v9f_A 481 VIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRK-FNQ-YEGFCSNTINQIYRSSKGQMWLATG- 557 (781)
T ss_dssp CCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEE-ECT-TTTCSCSCEEEEEECTTSCEEEEET-
T ss_pred EEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEE-ccC-CCCCCCCeeEEEEECCCCCEEEEEC-
Confidence 43222111 11224455553 467775433459999998875443 221 234444445555443 789998764
Q ss_pred CCCeEEEEeCCCCc
Q 023864 255 VWPCIPYAYLQAFG 268 (276)
Q Consensus 255 s~d~I~vIDp~T~~ 268 (276)
. .-|.++|+++++
T Consensus 558 ~-Glv~~~d~~~~~ 570 (781)
T 3v9f_A 558 E-GLVCFPSARNFD 570 (781)
T ss_dssp T-EEEEESCTTTCC
T ss_pred C-CceEEECCCCCc
Confidence 3 333889998865
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.065 Score=46.35 Aligned_cols=168 Identities=8% Similarity=-0.045 Sum_probs=94.5
Q ss_pred EEEEEecCCCCCceEEEEecC--CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecC-CCceEEEEEEeC---CEEEEEEee
Q 023864 95 VVNEFPHDPRAFTQGLLYAEN--DTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLLG---EKLFQVTWL 168 (276)
Q Consensus 95 Vv~~~Phd~~aFTQGL~~~~d--g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~-~~~FgEGit~~g---~~LyqlTwk 168 (276)
.+.++.. ....+..+.|+++ |.++.|++ .+..|+.||+++++......+. ....-..+++.. +.+....-.
T Consensus 45 ~~~~l~g-H~~~V~~v~~s~~~~g~~l~s~s--~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~ 121 (297)
T 2pm7_B 45 LIDTLTG-HEGPVWRVDWAHPKFGTILASCS--YDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASS 121 (297)
T ss_dssp CCEEECC-CSSCEEEEEECCGGGCSEEEEEE--TTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred EEEEEcc-ccCCeEEEEecCCCcCCEEEEEc--CCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEEC
Confidence 4455542 2445679999753 77777777 7789999999988532211122 122234566643 355566667
Q ss_pred CCEEEEEeCCCCcE--EEEEecCCC--CeeEEeeC-------------CCEEEEECCCceEEEEcCCCCcEEEEEEeeeC
Q 023864 169 QKTGFIYDQNNLNK--LEEFTHQMK--DGWGLATD-------------GKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYK 231 (276)
Q Consensus 169 ~~~v~V~D~~tlk~--i~~~~~~~~--EGWGLT~D-------------g~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~ 231 (276)
++.+.+||..+.+. ...+.-... ....+.++ ++.|.....+..|.++|..+.+......-...
T Consensus 122 d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~ 201 (297)
T 2pm7_B 122 DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE 201 (297)
T ss_dssp TSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC
T ss_pred CCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec
Confidence 89999999876532 122221100 11223343 45666655567899998877552211111112
Q ss_pred CEeeeeeeeeEEEC----CEEEEEeCCCCCeEEEEeCCCC
Q 023864 232 GREVRNLNELEFIK----GEVWANVWQVWPCIPYAYLQAF 267 (276)
Q Consensus 232 g~pv~~lNELE~id----G~lyANvw~s~d~I~vIDp~T~ 267 (276)
|+. ..++.+.|.. +.+.|..-.+ ..|.+-|.+++
T Consensus 202 ~H~-~~V~~v~~sp~~~~~~~las~s~D-~~v~iWd~~~~ 239 (297)
T 2pm7_B 202 GHS-DWVRDVAWSPTVLLRSYMASVSQD-RTCIIWTQDNE 239 (297)
T ss_dssp CCS-SCEEEEEECCCCSSSEEEEEEETT-SCEEEEEESST
T ss_pred CCC-CceEEEEECCCCCCceEEEEEECC-CcEEEEEeCCC
Confidence 221 2345566653 4677777666 78888887663
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.025 Score=52.98 Aligned_cols=156 Identities=8% Similarity=-0.046 Sum_probs=92.0
Q ss_pred CCCceEEEEecC-CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeCCEEEEEeCCCC
Q 023864 104 RAFTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNL 180 (276)
Q Consensus 104 ~aFTQGL~~~~d-g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~~~v~V~D~~tl 180 (276)
.....++.|+|+ +.++.+++ .+..|+.||+++++..... .+..--.-.+++. ++.|+... .++++.+||.+ .
T Consensus 149 ~~~V~~v~~~p~~~~~las~s--~Dg~v~iwD~~~~~~~~~~-~~~~~~v~~v~wspdg~~lasgs-~dg~v~iwd~~-~ 223 (434)
T 2oit_A 149 GGMVIDMKWNPTVPSMVAVCL--ADGSIAVLQVTETVKVCAT-LPSTVAVTSVCWSPKGKQLAVGK-QNGTVVQYLPT-L 223 (434)
T ss_dssp GGSEEEEEECSSCTTEEEEEE--TTSCEEEEEESSSEEEEEE-ECGGGCEEEEEECTTSSCEEEEE-TTSCEEEECTT-C
T ss_pred CCceEEEEECCCCCCEEEEEE--CCCeEEEEEcCCCcceeec-cCCCCceeEEEEcCCCCEEEEEc-CCCcEEEEccC-C
Confidence 455689999997 67877776 6789999999998654332 2212223355554 45555554 78999999998 5
Q ss_pred cEEEEEecCC---C----CeeEEee--CCCEEEE-ECCC------ceEEEEcCCCC------cEEEEEEeee--CCEeee
Q 023864 181 NKLEEFTHQM---K----DGWGLAT--DGKVLFG-SDGS------SMLYQIDPQTL------KVIRKDIVRY--KGREVR 236 (276)
Q Consensus 181 k~i~~~~~~~---~----EGWGLT~--Dg~~L~v-SDGS------~~L~viDp~t~------~vi~~I~V~~--~g~pv~ 236 (276)
+...+++.+. . ....++. ++..+.+ +.+. ..+.++|..+. ..++.+.+.. .+...+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~ 303 (434)
T 2oit_A 224 QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQH 303 (434)
T ss_dssp CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCC
T ss_pred cccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCc
Confidence 6666665321 1 2234444 4444433 3232 23777775543 2334444421 122212
Q ss_pred eeeeeEEEC--CEEEEEeCCCCCeEEEEeCCC
Q 023864 237 NLNELEFIK--GEVWANVWQVWPCIPYAYLQA 266 (276)
Q Consensus 237 ~lNELE~id--G~lyANvw~s~d~I~vIDp~T 266 (276)
+. .+.++. +.++++.+.+ +.|.+|....
T Consensus 304 ~~-~~~~l~dw~l~~v~s~~s-~dv~vl~~~~ 333 (434)
T 2oit_A 304 HY-YLSYIEEWDLVLAASAAS-TEVSILARQS 333 (434)
T ss_dssp CE-EEEEEGGGTEEEEEETTC-SBCEEEEECT
T ss_pred ce-eeehhccCCEEEEecCCC-CceeEEEecC
Confidence 22 122332 4799999999 9999998654
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.026 Score=54.07 Aligned_cols=103 Identities=7% Similarity=0.044 Sum_probs=64.7
Q ss_pred EEEEEEe-CCEEEEEEeeCCEEEEEeCCCCcE--EEEEecC--CCC------eeEEeeC---CCEEEEECC---------
Q 023864 152 GEGLTLL-GEKLFQVTWLQKTGFIYDQNNLNK--LEEFTHQ--MKD------GWGLATD---GKVLFGSDG--------- 208 (276)
Q Consensus 152 gEGit~~-g~~LyqlTwk~~~v~V~D~~tlk~--i~~~~~~--~~E------GWGLT~D---g~~L~vSDG--------- 208 (276)
+.+|++. +++||+.....+++++++..+.+. +..++-. .+. |.++.+| +.+||+++.
T Consensus 29 P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~ 108 (454)
T 1cru_A 29 PHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDK 108 (454)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--C
T ss_pred ceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCcc
Confidence 5588886 469999887777999999765543 2333211 111 5666776 899999872
Q ss_pred ----CceEEEEcCC--CCcEE--EEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCC
Q 023864 209 ----SSMLYQIDPQ--TLKVI--RKDIVRYKGREVRNLNELEFI-KGEVWANVWQ 254 (276)
Q Consensus 209 ----S~~L~viDp~--t~~vi--~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~ 254 (276)
.++|+.++.. +.++. +.|-........++.+-|.+. ||+||++++.
T Consensus 109 ~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 109 ELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp CSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 3578777643 23332 122212222234678888886 8899999874
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.017 Score=56.18 Aligned_cols=120 Identities=12% Similarity=0.108 Sum_probs=80.6
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcE-EEEeecCCCceEEEEE--EeC-C-EEEEEEeeCCEEEEEeCC
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKV-EAINQMEGSYFGEGLT--LLG-E-KLFQVTWLQKTGFIYDQN 178 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv-~~~~~l~~~~FgEGit--~~g-~-~LyqlTwk~~~v~V~D~~ 178 (276)
......+.|++++.|. +++ .+..|+.||+++++. ......-... -..++ ... + .++...=.++++.++|..
T Consensus 266 ~~~v~sv~~s~~~~la-sgs--~DgtV~lWD~~~~~~~~~~~~~H~~~-V~sv~~~~s~~g~~~laS~S~D~tvklWD~~ 341 (524)
T 2j04_B 266 DSLITTFDFLSPTTVV-CGF--KNGFVAEFDLTDPEVPSFYDQVHDSY-ILSVSTAYSDFEDTVVSTVAVDGYFYIFNPK 341 (524)
T ss_dssp TTCEEEEEESSSSEEE-EEE--TTSEEEEEETTBCSSCSEEEECSSSC-EEEEEEECCTTSCCEEEEEETTSEEEEECGG
T ss_pred CCCEEEEEecCCCeEE-EEe--CCCEEEEEECCCCCCceEEeeccccc-EEEEEEEcCCCCCeEEEEeccCCeEEEEECC
Confidence 3556789998766554 444 678999999998742 1222222221 23442 233 3 677777889999999999
Q ss_pred CCcEEEEEecCCC----CeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEE
Q 023864 179 NLNKLEEFTHQMK----DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDI 227 (276)
Q Consensus 179 tlk~i~~~~~~~~----EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~ 227 (276)
+.+.+.++.-... ....++||++.|..+++.+.|.++|..+++.+.++.
T Consensus 342 ~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~ 394 (524)
T 2j04_B 342 DIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV 394 (524)
T ss_dssp GHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEE
T ss_pred CCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeee
Confidence 8877665531111 245678899998888888899999999987655543
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.086 Score=51.15 Aligned_cols=166 Identities=7% Similarity=0.025 Sum_probs=101.2
Q ss_pred EEEecCCCCCceEEEEecC------CEEEEEcCCCCCCeEEEEeCCCCcEE----EEe-----ec-CCCceEEEEEEeCC
Q 023864 97 NEFPHDPRAFTQGLLYAEN------DTLFESTGLYGRSSVRRVALETGKVE----AIN-----QM-EGSYFGEGLTLLGE 160 (276)
Q Consensus 97 ~~~Phd~~aFTQGL~~~~d------g~LyeStG~yg~S~I~~iDl~tgkv~----~~~-----~l-~~~~FgEGit~~g~ 160 (276)
.++.|. ..-+..+.|+|+ +.++.|++ .+..|+.||+.+++.. ... .+ +..-....+++..+
T Consensus 201 ~~l~~~-~~~V~~v~wsp~~~~~~~~~~LAs~s--~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~ 277 (524)
T 2j04_B 201 QTIVHS-FGEVWDLKWHEGCHAPHLVGCLSFVS--QEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP 277 (524)
T ss_dssp EEEEEC-CCSEEEEEECSSCCCSSSSCEEEEEE--TTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS
T ss_pred EEEEec-CCcEEEEEECCCCCCCCCCceEEEEe--cCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC
Confidence 344553 233578999986 46777777 6789999999887421 000 11 11122456676554
Q ss_pred EEEEEEeeCCEEEEEeCCCCc-EEEEEecCCCCeeEE----eeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEe
Q 023864 161 KLFQVTWLQKTGFIYDQNNLN-KLEEFTHQMKDGWGL----ATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGRE 234 (276)
Q Consensus 161 ~LyqlTwk~~~v~V~D~~tlk-~i~~~~~~~~EGWGL----T~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~p 234 (276)
......-.++++.+||.++.+ +...+......=+.+ .+||..+++|- .+.+|.++|..+.+....+.-...+
T Consensus 278 ~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~-- 355 (524)
T 2j04_B 278 TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG-- 355 (524)
T ss_dssp SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSC--
T ss_pred CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccccc--
Confidence 455566678999999998753 344454321233345 34563555544 5778999999887765544322111
Q ss_pred eeeeeeeEEEC-CEEEEEeCCCCCeEEEEeCCCCcE
Q 023864 235 VRNLNELEFIK-GEVWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 235 v~~lNELE~id-G~lyANvw~s~d~I~vIDp~T~~v 269 (276)
.+++-+.|.. |..+|.--.. +.|-+.|.+++..
T Consensus 356 -~~v~~v~fsp~~~~l~s~~~d-~tv~lwd~~~~~~ 389 (524)
T 2j04_B 356 -SNLVPVVYCPQIYSYIYSDGA-SSLRAVPSRAAFA 389 (524)
T ss_dssp -CSCCCEEEETTTTEEEEECSS-SEEEEEETTCTTC
T ss_pred -CcccceEeCCCcCeEEEeCCC-CcEEEEECccccc
Confidence 1234556664 6667766566 7899999988763
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.13 Score=45.85 Aligned_cols=114 Identities=14% Similarity=0.142 Sum_probs=77.1
Q ss_pred EEEEecCCEEEEEcCC-C---C----CCeEEEEeCCCCcEEEEeecC-CCceEEEEEEeCCEEEEEEeeC----------
Q 023864 109 GLLYAENDTLFESTGL-Y---G----RSSVRRVALETGKVEAINQME-GSYFGEGLTLLGEKLFQVTWLQ---------- 169 (276)
Q Consensus 109 GL~~~~dg~LyeStG~-y---g----~S~I~~iDl~tgkv~~~~~l~-~~~FgEGit~~g~~LyqlTwk~---------- 169 (276)
+.+.. +++||+-.|. . + .+.+.+||+.+.+-.....++ ...++-+++..+++||++-=.+
T Consensus 60 ~~~~~-~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 138 (357)
T 2uvk_A 60 TSAFI-DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFED 138 (357)
T ss_dssp EEEEE-TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHH
T ss_pred eEEEE-CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccc
Confidence 45555 5899987664 1 0 367999999999876655665 5556667777999999997532
Q ss_pred -----------------------------CEEEEEeCCCCc--EEEEEecCCCCeeEEeeCCCEEEEECC-------Cce
Q 023864 170 -----------------------------KTGFIYDQNNLN--KLEEFTHQMKDGWGLATDGKVLFGSDG-------SSM 211 (276)
Q Consensus 170 -----------------------------~~v~V~D~~tlk--~i~~~~~~~~EGWGLT~Dg~~L~vSDG-------S~~ 211 (276)
+.+.+||+.+.+ .+...+.+...+-+++..++.||+--| ++.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~ 218 (357)
T 2uvk_A 139 LNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDA 218 (357)
T ss_dssp HHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCC
T ss_pred hhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCc
Confidence 789999998765 444444432344677777778888654 567
Q ss_pred EEEEcC--CCCcEE
Q 023864 212 LYQIDP--QTLKVI 223 (276)
Q Consensus 212 L~viDp--~t~~vi 223 (276)
++.+|. ++.+-.
T Consensus 219 v~~~d~d~~~~~W~ 232 (357)
T 2uvk_A 219 VFELDFTGNNLKWN 232 (357)
T ss_dssp EEEEECC---CEEE
T ss_pred eEEEEecCCCCcEE
Confidence 877764 766543
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.32 Score=48.23 Aligned_cols=152 Identities=11% Similarity=0.017 Sum_probs=91.7
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEE
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKL 183 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i 183 (276)
...+..+..+.+|.||.+|. +-|.+||..+++........... -..+...++.||+.|.. -++.||+.+.+.
T Consensus 62 ~~~i~~i~~d~~g~lWigT~----~Gl~~yd~~~~~f~~~~~~~~~~-i~~i~~~~g~lWigt~~--Gl~~~~~~~~~~- 133 (758)
T 3ott_A 62 NTRIYCGVIIDNTYLYMGTD----NGILVYNYRADRYEQPETDFPTD-VRTMALQGDTLWLGALN--GLYTYQLQSRKL- 133 (758)
T ss_dssp SSCEEEEEEETTTEEEEEET----TEEEEEETTTTEECCCSCCCCSC-EEEEEEETTEEEEEETT--EEEEEETTTCCE-
T ss_pred CceEEEEEEcCCCcEEEEeC----CCeEEEeCCCCEEECcccCCCce-EEEEEecCCcEEEEcCC--cceeEeCCCCeE-
Confidence 34567787888899999885 46899999998764311111111 12345568999999954 789999987553
Q ss_pred EEEe-----cCCCCeeEEeeC-CCEEEEECCCceEEEEcCCCCcEEEEEEeee-CCEeeeeeeeeEEE-C-CEEEEEeCC
Q 023864 184 EEFT-----HQMKDGWGLATD-GKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY-KGREVRNLNELEFI-K-GEVWANVWQ 254 (276)
Q Consensus 184 ~~~~-----~~~~EGWGLT~D-g~~L~vSDGS~~L~viDp~t~~vi~~I~V~~-~g~pv~~lNELE~i-d-G~lyANvw~ 254 (276)
..+. .+...=+.+..| ...||+.-. +-|+.+|+++.+... +.... .+.+-..++.|... + +.||+...
T Consensus 134 ~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~- 210 (758)
T 3ott_A 134 TSFDTRRNGLPNNTIYSIIRTKDNQIYVGTY-NGLCRYIPSNGKFEG-IPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE- 210 (758)
T ss_dssp EEECHHHHCCSCSCEEEEEECTTCCEEEEET-TEEEEEETTTTEEEE-ECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-
T ss_pred EEeccCCCCcCCCeEEEEEEcCCCCEEEEeC-CCHhhCccCCCceEE-ecCCCccccccceeEEEEEECCCCEEEEEEC-
Confidence 3441 111123456666 456777332 469999998876532 22111 11111124445444 3 46898763
Q ss_pred CCCeEEEEeCCCCc
Q 023864 255 VWPCIPYAYLQAFG 268 (276)
Q Consensus 255 s~d~I~vIDp~T~~ 268 (276)
+-+.++|+++++
T Consensus 211 --~Gl~~~~~~~~~ 222 (758)
T 3ott_A 211 --GYLFQYFPSTGQ 222 (758)
T ss_dssp --EEEEEEETTTTE
T ss_pred --CCCeEEcCCCCe
Confidence 468899998864
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.18 Score=49.44 Aligned_cols=153 Identities=11% Similarity=0.131 Sum_probs=86.6
Q ss_pred eEEEEecCCE-EEEEcCCC----------CCCeEEEEeCCCCcEE--EEeecCC---CceEEEEEEeCCEEEEEEeeC--
Q 023864 108 QGLLYAENDT-LFESTGLY----------GRSSVRRVALETGKVE--AINQMEG---SYFGEGLTLLGEKLFQVTWLQ-- 169 (276)
Q Consensus 108 QGL~~~~dg~-LyeStG~y----------g~S~I~~iDl~tgkv~--~~~~l~~---~~FgEGit~~g~~LyqlTwk~-- 169 (276)
.++.|++||+ |+.+...- +...|.++++.+++.. .....+. ..++-.++.+|..|+...+..
T Consensus 171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~ 250 (695)
T 2bkl_A 171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWS 250 (695)
T ss_dssp CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTT
T ss_pred cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCC
Confidence 6899999985 44433211 2456999999998621 1122222 233333444566777766655
Q ss_pred -CEEEEEeCCCCcEEEEEecC-CCCeeEEeeCCCEEEE-EC---CCceEEEEcCCCCcE--EEEEEeeeCCEeeeeeeee
Q 023864 170 -KTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFG-SD---GSSMLYQIDPQTLKV--IRKDIVRYKGREVRNLNEL 241 (276)
Q Consensus 170 -~~v~V~D~~tlk~i~~~~~~-~~EGWGLT~Dg~~L~v-SD---GS~~L~viDp~t~~v--i~~I~V~~~g~pv~~lNEL 241 (276)
..++++|..+.+. .++... ...-.-+.+||+ ||+ +| +..+|+.+|.++.+. .+.+.-.... ..+..+
T Consensus 251 ~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~---~~l~~~ 325 (695)
T 2bkl_A 251 ENDVYWKRPGEKDF-RLLVKGVGAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSS---ASLLSV 325 (695)
T ss_dssp EEEEEEECTTCSSC-EEEEECSSCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSS---CEEEEE
T ss_pred ceEEEEEcCCCCce-EEeecCCCceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCC---CeEEEE
Confidence 3788888765543 333322 112222457888 555 76 367999999988753 1222222112 234556
Q ss_pred EEECCEEEEEeCC--CCCeEEEEeCCC
Q 023864 242 EFIKGEVWANVWQ--VWPCIPYAYLQA 266 (276)
Q Consensus 242 E~idG~lyANvw~--s~d~I~vIDp~T 266 (276)
.+.+++|++..-. . ..|.++|+..
T Consensus 326 ~~~~~~lv~~~~~dg~-~~l~~~~~~g 351 (695)
T 2bkl_A 326 SIVGGHLSLEYLKDAT-SEVRVATLKG 351 (695)
T ss_dssp EEETTEEEEEEEETTE-EEEEEEETTC
T ss_pred EEECCEEEEEEEECCE-EEEEEEeCCC
Confidence 6778887765432 2 4677788653
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.13 Score=46.62 Aligned_cols=152 Identities=10% Similarity=0.029 Sum_probs=87.6
Q ss_pred ecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeec---CC-CceEEEEEEe---------CCEEEEEEeeCCEEEEEeCCC
Q 023864 113 AENDTLFESTGLYGRSSVRRVALETGKVEAINQM---EG-SYFGEGLTLL---------GEKLFQVTWLQKTGFIYDQNN 179 (276)
Q Consensus 113 ~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l---~~-~~FgEGit~~---------g~~LyqlTwk~~~v~V~D~~t 179 (276)
.+++.++.+++ .+..|+.||.++++......+ .. .-+-..+++. ++++..-.=.++++.++|..+
T Consensus 98 ~~~~~~las~~--~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~ 175 (393)
T 4gq1_A 98 PVYSLFLACVC--QDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD 175 (393)
T ss_dssp CEEEEEEEEEE--TTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred CCCCCEEEEEe--CCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence 33455666666 788999999999977554433 21 2334455553 356666667899999999987
Q ss_pred CcEEEEE-ecCCCCeeE--EeeCCCE-EEEECCCceEEEEcCCCCcEEEEEEeeeCC--------------------Eee
Q 023864 180 LNKLEEF-THQMKDGWG--LATDGKV-LFGSDGSSMLYQIDPQTLKVIRKDIVRYKG--------------------REV 235 (276)
Q Consensus 180 lk~i~~~-~~~~~EGWG--LT~Dg~~-L~vSDGS~~L~viDp~t~~vi~~I~V~~~g--------------------~pv 235 (276)
.+.+..+ ... ..... +.|++.. |........|.++|..+.+...+..-.... ...
T Consensus 176 ~~~~~~~~~~~-~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 254 (393)
T 4gq1_A 176 EGPILAGYPLS-SPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIA 254 (393)
T ss_dssp TEEEEEEEECS-SCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCS
T ss_pred CceeeeecCCC-CCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccc
Confidence 7666554 433 34444 4577765 444556789999999988765443321100 001
Q ss_pred eeeeeeEEE--CCEEEEEeCCCCCeEEEEeCCCCc
Q 023864 236 RNLNELEFI--KGEVWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 236 ~~lNELE~i--dG~lyANvw~s~d~I~vIDp~T~~ 268 (276)
..++-+.+. ||...+..-.. +.|.+-|.++++
T Consensus 255 ~~v~~v~~~~~dg~~l~s~s~d-~~i~vwd~~~~~ 288 (393)
T 4gq1_A 255 SSLANVRWIGSDGSGILAMCKS-GAWLRWNLFANN 288 (393)
T ss_dssp SSCSEEEEETTTTCEEEEECTT-SEEEEEEC----
T ss_pred ccceeeeeecCCCCEEEEEeCC-CCEEEEECccCC
Confidence 122233343 56655555556 788888888754
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.083 Score=53.04 Aligned_cols=156 Identities=8% Similarity=0.007 Sum_probs=97.1
Q ss_pred EEEEecCCEEEEEcCCC--CCCeEEEEeCCCCcEEEEe-e-----cCCCceEEEEEEe--CCEEEEEEee------CCEE
Q 023864 109 GLLYAENDTLFESTGLY--GRSSVRRVALETGKVEAIN-Q-----MEGSYFGEGLTLL--GEKLFQVTWL------QKTG 172 (276)
Q Consensus 109 GL~~~~dg~LyeStG~y--g~S~I~~iDl~tgkv~~~~-~-----l~~~~FgEGit~~--g~~LyqlTwk------~~~v 172 (276)
|-...-++.||.-.|.. ..+.+.+||+.+++-.... + +|....+-+++.. +++||+.-=. -+.+
T Consensus 391 g~~~~~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv 470 (695)
T 2zwa_A 391 GDVDVAGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDN 470 (695)
T ss_dssp CEEEECSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCC
T ss_pred eEEEEECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccE
Confidence 55543467899876632 2467999999999865544 3 5554555677888 9999998432 2578
Q ss_pred EEEeCCC--CcEEEEEecCCCCeeEEee-CCCEEEEECC---CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeee-EEEC
Q 023864 173 FIYDQNN--LNKLEEFTHQMKDGWGLAT-DGKVLFGSDG---SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNEL-EFIK 245 (276)
Q Consensus 173 ~V~D~~t--lk~i~~~~~~~~EGWGLT~-Dg~~L~vSDG---S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNEL-E~id 245 (276)
.+||+.+ .+.+...+.+ ..+-+.+. .++.||+--| ...++++|+++.+-...-..+. .|..+-.=- ...+
T Consensus 471 ~~yd~~t~~W~~~~~~p~~-R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~--~p~~r~~~~a~v~~ 547 (695)
T 2zwa_A 471 WIFDMKTREWSMIKSLSHT-RFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDE--FFQNSLVSAGLEFD 547 (695)
T ss_dssp EEEETTTTEEEECCCCSBC-CBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSG--GGGSCCBSCEEEEE
T ss_pred EEEeCCCCcEEECCCCCCC-cccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCC--CCCcccceeEEEEe
Confidence 9999988 4455555554 45666666 3666777544 2289999999987543221111 111111101 1223
Q ss_pred ---CEEEEEeCC-------CCCeEEEEeCCCCc
Q 023864 246 ---GEVWANVWQ-------VWPCIPYAYLQAFG 268 (276)
Q Consensus 246 ---G~lyANvw~-------s~d~I~vIDp~T~~ 268 (276)
|+||+-=.. . +.+.+.|++++.
T Consensus 548 ~~~~~iyv~GG~~~~~~~~~-~~v~~yd~~~~~ 579 (695)
T 2zwa_A 548 PVSKQGIILGGGFMDQTTVS-DKAIIFKYDAEN 579 (695)
T ss_dssp TTTTEEEEECCBCTTSSCBC-CEEEEEEECTTC
T ss_pred CCCCEEEEECCcCCCCCeee-CcEEEEEccCCc
Confidence 677754332 4 679999999876
|
| >3s9j_A Member of DUF4221 family; 6-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.75A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.063 Score=50.85 Aligned_cols=110 Identities=15% Similarity=0.091 Sum_probs=79.9
Q ss_pred CEEEEEEeeCC--EEEEEeCCCCcEEEEEecC--CCCeeE-----E-eeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEe
Q 023864 160 EKLFQVTWLQK--TGFIYDQNNLNKLEEFTHQ--MKDGWG-----L-ATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIV 228 (276)
Q Consensus 160 ~~LyqlTwk~~--~v~V~D~~tlk~i~~~~~~--~~EGWG-----L-T~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V 228 (276)
+-||-++-+.+ .+-+||.++++++++++++ +|.|.| + ..+.+.+|+++ .+..|+.+|.+ +++++++..
T Consensus 40 ~yL~~~N~~~~~~~i~~iDL~~~kl~k~i~~ekEGPNgi~~~~~~~~i~~~DsI~i~~~~~~~i~l~n~~-G~~~~k~~~ 118 (369)
T 3s9j_A 40 EYLHFENTQKSLYDIVIFDIENQQIAKRIPLHKTGPNGLPAVFGSRPSPDSQYILVAQNNISRLSSINSQ-GEIIRNYNF 118 (369)
T ss_dssp EEEEEEECSTTCCEEEEEETTTTEEEEEEECBSSSTTBCTTCCCEEESSSTTSEEEEEGGGTEEEEECTT-CCEEEEEEC
T ss_pred EEEEEeCCCCCcCcEEEEECCCCceeeeeccccCCCCCcccceeeEEecCCCEEEEEeCCcceEEEECCC-ceEEEEEec
Confidence 47888888888 9999999999999999975 455533 3 34667888876 88999999966 899999988
Q ss_pred eeCCEeeeee-------eeeEEECCEEEEE-----------eCCCCCeEEEEeCCCCcEE
Q 023864 229 RYKGREVRNL-------NELEFIKGEVWAN-----------VWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 229 ~~~g~pv~~l-------NELE~idG~lyAN-----------vw~s~d~I~vIDp~T~~v~ 270 (276)
...+..+... +-+-..|+.+|++ .|..+..++.||+.++++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~k~~~~a~~dl~~~~~~ 178 (369)
T 3s9j_A 119 QTPEGRFTPLSFGSYYNAPAFIKDSCIFLRQEILKPDMKKEDWPRTHMFASQDLRTGEVK 178 (369)
T ss_dssp CCTTSCCCCCCCBTTTTBCCEEETTEEEEECCCSSSSCCGGGGGGSEEEEEEETTTCCEE
T ss_pred CCCccccccccccccccCcceecCceEEEeccccccccchhhhccCceEEEEECCCCcEE
Confidence 7655322100 1122346777874 2344468999999998876
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.18 Score=50.68 Aligned_cols=157 Identities=12% Similarity=0.030 Sum_probs=97.9
Q ss_pred eEEEEec-CCEEEEEcCCCCC----CeEEEEeCCCCcEEEEeecCCCceEEEEEEe-CCEEEEEEeeCC--EEEEEeCCC
Q 023864 108 QGLLYAE-NDTLFESTGLYGR----SSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQK--TGFIYDQNN 179 (276)
Q Consensus 108 QGL~~~~-dg~LyeStG~yg~----S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~-g~~LyqlTwk~~--~v~V~D~~t 179 (276)
.+.+..+ +|+||+-.|..+. +.+.+||+.+.+-....++|...++-+.+.. +++||+.--.++ .+.+||+.+
T Consensus 443 hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t 522 (695)
T 2zwa_A 443 HTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTE 522 (695)
T ss_dssp CEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTT
T ss_pred eEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCC
Confidence 3666664 6899997775432 5799999999887666677765566677775 999999954332 799999988
Q ss_pred CcEEEE-----EecCCCCeeE-EeeC--CCEEEEECC--------CceEEEEcCCCCcE-----EEEEEee-eCCEeeee
Q 023864 180 LNKLEE-----FTHQMKDGWG-LATD--GKVLFGSDG--------SSMLYQIDPQTLKV-----IRKDIVR-YKGREVRN 237 (276)
Q Consensus 180 lk~i~~-----~~~~~~EGWG-LT~D--g~~L~vSDG--------S~~L~viDp~t~~v-----i~~I~V~-~~g~pv~~ 237 (276)
.+-..- .+.+ ..+-+ +..+ .+.||+--| .+.++.+|+++.+- -..+.-. ..++.-+
T Consensus 523 ~~W~~~~~~g~~p~~-r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~- 600 (695)
T 2zwa_A 523 EIFKDVTPKDEFFQN-SLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS- 600 (695)
T ss_dssp TEEEECCCSSGGGGS-CCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-
T ss_pred CceEEccCCCCCCCc-ccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-
Confidence 654322 2223 23333 3323 267887654 36799999999872 1222211 1111111
Q ss_pred eeeeEEEC-CEEEEEeC--------CCCCeEEEEeCCCCcE
Q 023864 238 LNELEFIK-GEVWANVW--------QVWPCIPYAYLQAFGS 269 (276)
Q Consensus 238 lNELE~id-G~lyANvw--------~s~d~I~vIDp~T~~v 269 (276)
-+...+ |+||+-=. .. +.|.+.|+++++-
T Consensus 601 --~~~~~~~~~iyv~GG~~~~~~~~~~-~~v~~yd~~t~~W 638 (695)
T 2zwa_A 601 --QIKYITPRKLLIVGGTSPSGLFDRT-NSIISLDPLSETL 638 (695)
T ss_dssp --EEEEEETTEEEEECCBCSSCCCCTT-TSEEEEETTTTEE
T ss_pred --eEEEeCCCEEEEECCccCCCCCCCC-CeEEEEECCCCeE
Confidence 123445 88776322 25 7899999998653
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=95.81 E-value=0.18 Score=50.07 Aligned_cols=155 Identities=10% Similarity=-0.007 Sum_probs=90.4
Q ss_pred CCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEe-ecCCCceEEEEEEe-CCEEEEEEeeCCEEEEEeCCCC
Q 023864 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAIN-QMEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNL 180 (276)
Q Consensus 103 ~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~-~l~~~~FgEGit~~-g~~LyqlTwk~~~v~V~D~~tl 180 (276)
+...+..+.-+.+|.||.+|. +-|.+||-.+-+..... .+... .-..|..+ ++.||+.|. +-++.||+.+.
T Consensus 20 ~~n~V~~I~qD~~G~lWigT~----~GL~ryDG~~~~~~~~~~~~~~~-~i~~i~~d~~g~lWigT~--~Gl~~yd~~~~ 92 (758)
T 3ott_A 20 EASVVSCFLQDSEGLIWIGSN----KGLFSYDGYSTQQHFTYGENNNT-RIYCGVIIDNTYLYMGTD--NGILVYNYRAD 92 (758)
T ss_dssp SCCCEEEEEECTTSCEEEEES----SCEEEECSSCEEECSCTTSTTSS-CEEEEEEETTTEEEEEET--TEEEEEETTTT
T ss_pred ccceEEEEEECCCCCEEEEEC----CCccccCCCceEEEEccCCCCCc-eEEEEEEcCCCcEEEEeC--CCeEEEeCCCC
Confidence 456678888888899999875 45888885432211110 12222 22344444 589999994 55899999875
Q ss_pred cEEEEEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCCCCCeE
Q 023864 181 NKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQVWPCI 259 (276)
Q Consensus 181 k~i~~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~s~d~I 259 (276)
+...........=+.+..+++.||+.-.. -|+.+|+++.+... +.-...+.+-..++.|... +|.||+... +-|
T Consensus 93 ~f~~~~~~~~~~i~~i~~~~g~lWigt~~-Gl~~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWigt~---~Gl 167 (758)
T 3ott_A 93 RYEQPETDFPTDVRTMALQGDTLWLGALN-GLYTYQLQSRKLTS-FDTRRNGLPNNTIYSIIRTKDNQIYVGTY---NGL 167 (758)
T ss_dssp EECCCSCCCCSCEEEEEEETTEEEEEETT-EEEEEETTTCCEEE-ECHHHHCCSCSCEEEEEECTTCCEEEEET---TEE
T ss_pred EEECcccCCCceEEEEEecCCcEEEEcCC-cceeEeCCCCeEEE-eccCCCCcCCCeEEEEEEcCCCCEEEEeC---CCH
Confidence 43220000001123344455678885433 79999998876543 2111122222344445444 789998763 569
Q ss_pred EEEeCCCCcE
Q 023864 260 PYAYLQAFGS 269 (276)
Q Consensus 260 ~vIDp~T~~v 269 (276)
.++|+++++.
T Consensus 168 ~~~~~~~~~~ 177 (758)
T 3ott_A 168 CRYIPSNGKF 177 (758)
T ss_dssp EEEETTTTEE
T ss_pred hhCccCCCce
Confidence 9999988553
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=95.56 E-value=0.092 Score=53.09 Aligned_cols=132 Identities=11% Similarity=0.103 Sum_probs=91.3
Q ss_pred CeEEEEeCCCCcEEEEeecCCCc----------eEE--------EEEE------eCCEEEEEEeeC-------------C
Q 023864 128 SSVRRVALETGKVEAINQMEGSY----------FGE--------GLTL------LGEKLFQVTWLQ-------------K 170 (276)
Q Consensus 128 S~I~~iDl~tgkv~~~~~l~~~~----------FgE--------Git~------~g~~LyqlTwk~-------------~ 170 (276)
+....+|.++.++.-++.++..+ ++- |.++ ..|.+.+.+|+. +
T Consensus 217 ~~f~~iD~~tm~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~ 296 (638)
T 3sbq_A 217 TMYNAIDAETMEMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLG 296 (638)
T ss_dssp EEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCT
T ss_pred eEEEEEcCCccEEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEEC
Confidence 34556899999987777555221 110 1111 125777888842 2
Q ss_pred --EEEEEeCCC----C-cEEEEEecC-CCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcE-------------EEEEEe
Q 023864 171 --TGFIYDQNN----L-NKLEEFTHQ-MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKV-------------IRKDIV 228 (276)
Q Consensus 171 --~v~V~D~~t----l-k~i~~~~~~-~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~v-------------i~~I~V 228 (276)
.+-|+|... . +.+..+|.+ .|.|.-++|||+++++++ .+.+++++|-+.+.. ..++++
T Consensus 297 g~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~ 376 (638)
T 3sbq_A 297 DSKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL 376 (638)
T ss_dssp TCCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC
T ss_pred CCCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC
Confidence 577899876 2 355667877 789999999999999999 699999999885322 556666
Q ss_pred eeCCEeeeeeeeeEEE-CCEEEEEeCCCCCeEEEEeCCC
Q 023864 229 RYKGREVRNLNELEFI-KGEVWANVWQVWPCIPYAYLQA 266 (276)
Q Consensus 229 ~~~g~pv~~lNELE~i-dG~lyANvw~s~d~I~vIDp~T 266 (276)
+. .|.+ .+|. +|..|.+.+-+ ..|++-|.++
T Consensus 377 Gl--GPlH----t~Fd~~G~aYTtlfid-SqvvkWni~~ 408 (638)
T 3sbq_A 377 GL--GPLH----TTFDGRGNAYTTLFID-SQVVKWNMEE 408 (638)
T ss_dssp CS--CEEE----EEECSSSEEEEEETTT-TEEEEEEHHH
T ss_pred CC--cccE----EEECCCCceEeeeeec-ceEEEEeccH
Confidence 54 4444 4465 57999999999 9999965543
|
| >3s9j_A Member of DUF4221 family; 6-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.75A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.8 Score=43.21 Aligned_cols=148 Identities=9% Similarity=0.020 Sum_probs=91.2
Q ss_pred cCCEEEEEcCCCCCC--eEEEEeCCCCcEEEEeecCC-------CceEEEE-EEeCCEEEEEEeeCCEEEEEeCCCCcEE
Q 023864 114 ENDTLFESTGLYGRS--SVRRVALETGKVEAINQMEG-------SYFGEGL-TLLGEKLFQVTWLQKTGFIYDQNNLNKL 183 (276)
Q Consensus 114 ~dg~LyeStG~yg~S--~I~~iDl~tgkv~~~~~l~~-------~~FgEGi-t~~g~~LyqlTwk~~~v~V~D~~tlk~i 183 (276)
.+|+-|...=.+..+ .|.+||++++++++++++.. ++++ |+ ....|.+|+.++....++++|. .++++
T Consensus 36 ~~~k~yL~~~N~~~~~~~i~~iDL~~~kl~k~i~~ekEGPNgi~~~~~-~~~i~~~DsI~i~~~~~~~i~l~n~-~G~~~ 113 (369)
T 3s9j_A 36 ENGKEYLHFENTQKSLYDIVIFDIENQQIAKRIPLHKTGPNGLPAVFG-SRPSPDSQYILVAQNNISRLSSINS-QGEII 113 (369)
T ss_dssp ETTEEEEEEEECSTTCCEEEEEETTTTEEEEEEECBSSSTTBCTTCCC-EEESSSTTSEEEEEGGGTEEEEECT-TCCEE
T ss_pred cCCcEEEEEeCCCCCcCcEEEEECCCCceeeeeccccCCCCCccccee-eEEecCCCEEEEEeCCcceEEEECC-CceEE
Confidence 456533322223567 99999999999999997762 2222 23 3356999999999999999995 45788
Q ss_pred EEEecC-CCCeeEEe---e--------CCCEEEEE-CC------------CceEEEEcCCCCcEEEEEEe--ee-CCEee
Q 023864 184 EEFTHQ-MKDGWGLA---T--------DGKVLFGS-DG------------SSMLYQIDPQTLKVIRKDIV--RY-KGREV 235 (276)
Q Consensus 184 ~~~~~~-~~EGWGLT---~--------Dg~~L~vS-DG------------S~~L~viDp~t~~vi~~I~V--~~-~g~pv 235 (276)
.++.+. .+.++... . ++..|+++ +. ...+..+|+++.++. .+.+ .+ .+...
T Consensus 114 ~k~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~k~~~~a~~dl~~~~~~-~l~l~yP~~~~~~~ 192 (369)
T 3s9j_A 114 RNYNFQTPEGRFTPLSFGSYYNAPAFIKDSCIFLRQEILKPDMKKEDWPRTHMFASQDLRTGEVK-WIPIFYPPIFKEEY 192 (369)
T ss_dssp EEEECCCTTSCCCCCCCBTTTTBCCEEETTEEEEECCCSSSSCCGGGGGGSEEEEEEETTTCCEE-EEEEECCSCCCCCC
T ss_pred EEEecCCCccccccccccccccCcceecCceEEEeccccccccchhhhccCceEEEEECCCCcEE-EeeccCCccccccc
Confidence 888765 22333200 1 12335553 21 236888999988775 3333 11 11000
Q ss_pred e---eeeeeE--E--ECCEEEEEeCCCCCeEEEEeCCC
Q 023864 236 R---NLNELE--F--IKGEVWANVWQVWPCIPYAYLQA 266 (276)
Q Consensus 236 ~---~lNELE--~--idG~lyANvw~s~d~I~vIDp~T 266 (276)
. .-.+.+ + .+|+++.+-+.+ +.|.+.| .+
T Consensus 193 ~~~~~~~~~~~s~~~~~~~~Iis~~~~-dsIyv~~-~~ 228 (369)
T 3s9j_A 193 DNIAGGYGFSYDYNYKESRLVCGFFGY-DSLMVTD-DL 228 (369)
T ss_dssp SSEEECCCEEEEEETTTTEEEEEETTC-SEEEEES-SS
T ss_pred ccccCCccceeEEEEECCEEEEEeccC-CeEEEEc-Cc
Confidence 0 001222 1 278999999999 9999888 55
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.2 Score=50.45 Aligned_cols=162 Identities=12% Similarity=0.070 Sum_probs=88.8
Q ss_pred CCceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCC--cE--EEEee-cCCCceEEEEE-EeCCEEEEEEeeC----CEEE
Q 023864 105 AFTQGLLYAENDT-LFESTGLYGRSSVRRVALETG--KV--EAINQ-MEGSYFGEGLT-LLGEKLFQVTWLQ----KTGF 173 (276)
Q Consensus 105 aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tg--kv--~~~~~-l~~~~FgEGit-~~g~~LyqlTwk~----~~v~ 173 (276)
.|.-++.+++||+ |+.+....+.+.|..+|++++ +. ..-.+ -....|. .. ..|++||.++.++ .+++
T Consensus 271 ~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s--~~~~~g~~l~~~t~~~~a~~~~L~ 348 (751)
T 2xe4_A 271 LFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYD--VQMHGTSHLVILTNEGGAVNHKLL 348 (751)
T ss_dssp TCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEE--EEEETTTEEEEEECTTTCTTCEEE
T ss_pred ceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEE--EeeeeCCEEEEEeCCCCCCCcEEE
Confidence 4656889999985 555444446889999999986 22 21111 1112231 22 2389999999875 4899
Q ss_pred EEeCCCCcEEEE--EecCCCCe---eEEeeCCCEEEEE---CCCceEEEEcC-------CCCcEEEEEEeeeCCEeeee-
Q 023864 174 IYDQNNLNKLEE--FTHQMKDG---WGLATDGKVLFGS---DGSSMLYQIDP-------QTLKVIRKDIVRYKGREVRN- 237 (276)
Q Consensus 174 V~D~~tlk~i~~--~~~~~~EG---WGLT~Dg~~L~vS---DGS~~L~viDp-------~t~~vi~~I~V~~~g~pv~~- 237 (276)
++|.++.....+ ++.. +. -+++.+++.|+++ ||..+|+++|+ ++.+..+.|.....+..+..
T Consensus 349 ~~d~~~~~~~~~~li~~~--~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~ 426 (751)
T 2xe4_A 349 IAPRGQPSDWSHVLVDHS--EDVFMESIAVRSNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLV 426 (751)
T ss_dssp EEETTSTTCCCCEEECCC--SSEEEEEEEECSSEEEEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEEC
T ss_pred EEcCCCcccceeeEECCC--CCcEEEEEEEECCEEEEEEEeCCEEEEEEEecccccccccCCccceEECCCCceeEEEec
Confidence 999875322122 3221 22 2355667777663 58889999997 44441344443332221110
Q ss_pred eeee-EEECCEEE--EEeCCCCCeEEEEeCCCCcEE
Q 023864 238 LNEL-EFIKGEVW--ANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 238 lNEL-E~idG~ly--ANvw~s~d~I~vIDp~T~~v~ 270 (276)
.|-+ ++.+++++ .+...+-..|..+|.++++..
T Consensus 427 ~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~ 462 (751)
T 2xe4_A 427 ESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRT 462 (751)
T ss_dssp GGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEE
T ss_pred cCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEE
Confidence 0100 12233333 233333146888888887643
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=94.98 E-value=1.2 Score=41.96 Aligned_cols=142 Identities=11% Similarity=0.081 Sum_probs=87.0
Q ss_pred ceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCc-----------EEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEE
Q 023864 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGK-----------VEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIY 175 (276)
Q Consensus 107 TQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgk-----------v~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~ 175 (276)
..-|++++++.|+.++| .+.+.+++++..+ ....++++. +..-++ +++.|++. .++.+.+|
T Consensus 40 ~nlLais~~~gll~a~~---~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~--~~~~l~v~ 111 (388)
T 1xip_A 40 LQNLDISNSKSLFVAAS---GSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS--TRNALYSL 111 (388)
T ss_dssp CBCEEEETTTTEEEEEE---TTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE--ESSEEEEE
T ss_pred ccEEEEcCCCCEEEEeC---CCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE--cCCcEEEE
Confidence 46889998766555444 3688888865433 123457887 776666 88899988 78999999
Q ss_pred eCCCCcEEEEEecCCCCee-EEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCC
Q 023864 176 DQNNLNKLEEFTHQMKDGW-GLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQ 254 (276)
Q Consensus 176 D~~tlk~i~~~~~~~~EGW-GLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~ 254 (276)
|..++......+.- ..+. .+-+-...+.+...+..|+++|.++.+... ... ...-..|....+.+ ...
T Consensus 112 dv~sl~~~~~~~~~-~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~---~~~------~Vs~v~WSpkG~~v-g~~ 180 (388)
T 1xip_A 112 DLEELSEFRTVTSF-EKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ---LAQ------NVTSFDVTNSQLAV-LLK 180 (388)
T ss_dssp ESSSTTCEEEEEEC-SSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE---EEE------SEEEEEECSSEEEE-EET
T ss_pred EchhhhccCcccee-ecceeeEEecCCCEEEEECCCCEEEEEccCCcccc---ccC------CceEEEEcCCceEE-EEc
Confidence 99998866555321 1221 122222236665667899999999887643 211 22223344322332 224
Q ss_pred CCCeEEEEeCCCCc
Q 023864 255 VWPCIPYAYLQAFG 268 (276)
Q Consensus 255 s~d~I~vIDp~T~~ 268 (276)
. +.|...+|.+++
T Consensus 181 d-g~i~~~~~~~~~ 193 (388)
T 1xip_A 181 D-RSFQSFAWRNGE 193 (388)
T ss_dssp T-SCEEEEEEETTE
T ss_pred C-CcEEEEcCCCcc
Confidence 4 677777777754
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=94.95 E-value=0.22 Score=43.46 Aligned_cols=97 Identities=14% Similarity=0.162 Sum_probs=59.3
Q ss_pred EEEEEcCCCCCCeEEEEeCCCCc-EEEEeecCC-CceEEEEEEeCC-----EEEEEEeeCCEEEEEeCCCC-------cE
Q 023864 117 TLFESTGLYGRSSVRRVALETGK-VEAINQMEG-SYFGEGLTLLGE-----KLFQVTWLQKTGFIYDQNNL-------NK 182 (276)
Q Consensus 117 ~LyeStG~yg~S~I~~iDl~tgk-v~~~~~l~~-~~FgEGit~~g~-----~LyqlTwk~~~v~V~D~~tl-------k~ 182 (276)
.++.+++ .+..|+.||+++++ ......+.. .-.-..+++..+ .+.+..=.++++.++|..+. +.
T Consensus 180 ~~l~sgs--~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~ 257 (316)
T 3bg1_A 180 KRFASGG--CDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKL 257 (316)
T ss_dssp CBEECCB--TTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCE
T ss_pred ceEEEec--CCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhh
Confidence 5666655 67889999997652 212222332 223345555432 55666667899999998763 22
Q ss_pred EEEEecCCCCeeE--EeeCCCEEEEECCCceEEEEcCC
Q 023864 183 LEEFTHQMKDGWG--LATDGKVLFGSDGSSMLYQIDPQ 218 (276)
Q Consensus 183 i~~~~~~~~EGWG--LT~Dg~~L~vSDGS~~L~viDp~ 218 (276)
+..+ . ..=|. +.+||+.|..+.....|.++|..
T Consensus 258 ~~~~--~-~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 258 LHKF--N-DVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEC--S-SCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred hhcC--C-CcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 3222 2 23334 56899988876667788888865
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=94.95 E-value=0.068 Score=52.97 Aligned_cols=110 Identities=14% Similarity=0.105 Sum_probs=68.9
Q ss_pred eEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC-CceE---EEEEE--eCCEEEEEEee--------CCEEE
Q 023864 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG-SYFG---EGLTL--LGEKLFQVTWL--------QKTGF 173 (276)
Q Consensus 108 QGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~-~~Fg---EGit~--~g~~LyqlTwk--------~~~v~ 173 (276)
..+.|++||+++.+. +..|..||+++|+......-.. ..+. ..+++ ++++|...... .+.++
T Consensus 20 ~~~~w~~dg~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 20 YSLRWISDHEYLYKQ----ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCEEECSSSEEEEEE----TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccEECCCCcEEEEc----CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 488999999877664 4689999999998654432221 1111 12333 45565554432 15678
Q ss_pred EEeCCCCcEEEEEecCC-CCeeEEeeCCCEE-EEECCCceEEEEcCCCCcEE
Q 023864 174 IYDQNNLNKLEEFTHQM-KDGWGLATDGKVL-FGSDGSSMLYQIDPQTLKVI 223 (276)
Q Consensus 174 V~D~~tlk~i~~~~~~~-~EGWGLT~Dg~~L-~vSDGS~~L~viDp~t~~vi 223 (276)
++|.++.+...-...+. -..-.++|||+.| |++| +.|+++|.++.+..
T Consensus 96 ~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~--~~i~~~~~~~~~~~ 145 (740)
T 4a5s_A 96 IYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWN--NDIYVKIEPNLPSY 145 (740)
T ss_dssp EEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEET--TEEEEESSTTSCCE
T ss_pred EEECCCCcEEEcccCCCcceeeEECCCCCEEEEEEC--CeEEEEECCCCceE
Confidence 99999887543111110 1222478999876 5565 68999999988754
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=94.60 E-value=0.13 Score=51.81 Aligned_cols=152 Identities=11% Similarity=-0.066 Sum_probs=82.0
Q ss_pred eEEEEe-cCCE-EEEEcCCCCC--CeEEEEeCCCC-cEEEEeecCCCceEEEEEE--eCCEEEEEEeeC----CEEEEEe
Q 023864 108 QGLLYA-ENDT-LFESTGLYGR--SSVRRVALETG-KVEAINQMEGSYFGEGLTL--LGEKLFQVTWLQ----KTGFIYD 176 (276)
Q Consensus 108 QGL~~~-~dg~-LyeStG~yg~--S~I~~iDl~tg-kv~~~~~l~~~~FgEGit~--~g~~LyqlTwk~----~~v~V~D 176 (276)
-+..|+ |||+ |..+...-|. ..|+++|+++| +.+.. .++.. + .++++ +++.||.....+ .++++++
T Consensus 177 ~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~~-~-~~~~WspDg~~l~y~~~d~~~~~~~v~~~~ 253 (751)
T 2xe4_A 177 MEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVSGT-N-GEIVWGPDHTSLFYVTKDETLRENKVWRHV 253 (751)
T ss_dssp EEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEEEE-C-SCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred eeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cccCc-e-eeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence 457899 9985 3322222243 45999999999 73211 11111 1 13445 345777776542 4799999
Q ss_pred CCCCcEE--EEEecCC-C--CeeEEeeCCCEEEEEC---CCceEEEEcCCCCc-EE--EEEEeeeCCEeeeeeeeeEEE-
Q 023864 177 QNNLNKL--EEFTHQM-K--DGWGLATDGKVLFGSD---GSSMLYQIDPQTLK-VI--RKDIVRYKGREVRNLNELEFI- 244 (276)
Q Consensus 177 ~~tlk~i--~~~~~~~-~--EGWGLT~Dg~~L~vSD---GS~~L~viDp~t~~-vi--~~I~V~~~g~pv~~lNELE~i- 244 (276)
..+.+.. ..+..+. . .+..+++||++|+++- +.+.|+++|+++.+ .. +.+ +.....+... .++.
T Consensus 254 lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l-~~~~~~~~~s---~~~~~ 329 (751)
T 2xe4_A 254 MGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIV-RPREKGVRYD---VQMHG 329 (751)
T ss_dssp TTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEES-SCCCTTCCEE---EEEET
T ss_pred CCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEe-ecCCCCceEE---Eeeee
Confidence 8876422 2222110 1 1234789999887633 47899999998752 11 222 1111112111 1222
Q ss_pred CCEEE-EEeCC--CCCeEEEEeCCC
Q 023864 245 KGEVW-ANVWQ--VWPCIPYAYLQA 266 (276)
Q Consensus 245 dG~ly-ANvw~--s~d~I~vIDp~T 266 (276)
+++|| ..+.. .+..|.++|.++
T Consensus 330 g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 330 TSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 44544 55442 215899999875
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=94.59 E-value=0.45 Score=46.71 Aligned_cols=125 Identities=12% Similarity=0.089 Sum_probs=78.7
Q ss_pred EEEEEEecCCCCCceEEEEec-CCEEEEEcCCCC---------CCeEEEEeCCCCcEEEEeec--CCCceEEEEEE-eCC
Q 023864 94 QVVNEFPHDPRAFTQGLLYAE-NDTLFESTGLYG---------RSSVRRVALETGKVEAINQM--EGSYFGEGLTL-LGE 160 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~-dg~LyeStG~yg---------~S~I~~iDl~tgkv~~~~~l--~~~~FgEGit~-~g~ 160 (276)
+.+..+|. ..+ +..+.+ +|+||...|... .+.+.+||+.+++......+ +...|+-+.++ .++
T Consensus 179 ~~~~~~P~--~~~--~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g 254 (656)
T 1k3i_A 179 GPTIDLPI--VPA--AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG 254 (656)
T ss_dssp EEEEECSS--CCS--EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS
T ss_pred eeeccCCC--Cce--eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCC
Confidence 34444554 333 667776 799998776322 23789999999875443333 34567766665 578
Q ss_pred EEEEEEe-eCCEEEEEeCCCCcEE--EEEecCCCCeeEEe-e-CCCEEEEECC-------CceEEEEcCCCCcEEE
Q 023864 161 KLFQVTW-LQKTGFIYDQNNLNKL--EEFTHQMKDGWGLA-T-DGKVLFGSDG-------SSMLYQIDPQTLKVIR 224 (276)
Q Consensus 161 ~LyqlTw-k~~~v~V~D~~tlk~i--~~~~~~~~EGWGLT-~-Dg~~L~vSDG-------S~~L~viDp~t~~vi~ 224 (276)
+||++-= .++.+.+||+.+.+-. ...+.+ ..+-+.+ . ||+ +|+-=| .+.+.++||++.+-..
T Consensus 255 ~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~-R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t~~W~~ 328 (656)
T 1k3i_A 255 QIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVA-RGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTWTS 328 (656)
T ss_dssp CEEEECSSSTTCEEEEEGGGTEEEECCCCSSC-CSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEEEE
T ss_pred CEEEeCCCCCCceEEecCcCCceeECCCCCcc-ccccceEEecCCe-EEEEeCcccCCcccccceEeCCCCCccee
Confidence 9999865 4568999998876533 333333 2333433 3 565 555444 2689999999987543
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=94.31 E-value=0.85 Score=43.93 Aligned_cols=45 Identities=22% Similarity=0.222 Sum_probs=32.3
Q ss_pred eEEEEEEe-cCCCCCceEEEEecCCEEEEEcCCCCC---------------CeEEEEeCCC
Q 023864 93 IQVVNEFP-HDPRAFTQGLLYAENDTLFESTGLYGR---------------SSVRRVALET 137 (276)
Q Consensus 93 ~~Vv~~~P-hd~~aFTQGL~~~~dg~LyeStG~yg~---------------S~I~~iDl~t 137 (276)
.++|-++| ....-+.-.|.|.|||.||.++|.-+. .+|.++|++.
T Consensus 126 ~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg 186 (463)
T 2wg3_C 126 ARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDT 186 (463)
T ss_dssp CEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCC
T ss_pred ceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcCCCCeeEEEEECCC
Confidence 44554565 334567888999999999999997542 3577777765
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.82 E-value=0.18 Score=47.13 Aligned_cols=111 Identities=9% Similarity=0.064 Sum_probs=75.4
Q ss_pred CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecC--CCceEE--EEEEeCCEEEEEE-eeCCEEEEEeCCCCcEEEEEecC-
Q 023864 116 DTLFESTGLYGRSSVRRVALETGKVEAINQME--GSYFGE--GLTLLGEKLFQVT-WLQKTGFIYDQNNLNKLEEFTHQ- 189 (276)
Q Consensus 116 g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~--~~~FgE--Git~~g~~LyqlT-wk~~~v~V~D~~tlk~i~~~~~~- 189 (276)
|.+|++|. +..|+.+|.++|+++=+.+.+ ..+... +....++.+|++. -.++.++.+|+++....-.+..+
T Consensus 11 ~~V~v~t~---dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~ 87 (339)
T 2be1_A 11 DILIAADV---EGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ 87 (339)
T ss_dssp EEEEEEET---TSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHH
T ss_pred CEEEEEeC---CCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccc
Confidence 57787655 578999999999988777665 122210 0001245788887 58999999999988766666543
Q ss_pred --CCCeeEEe-----------eCCCEEEEECCCceEEEEcCCCCcEEEEEEee
Q 023864 190 --MKDGWGLA-----------TDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVR 229 (276)
Q Consensus 190 --~~EGWGLT-----------~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~ 229 (276)
..-..-.+ .++..+|+.....+|+.+|++|++++-+..++
T Consensus 88 lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 88 LVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp HHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred ceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 00001111 15667888777889999999999999887765
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.67 E-value=0.73 Score=42.94 Aligned_cols=109 Identities=7% Similarity=-0.012 Sum_probs=67.4
Q ss_pred CCEEEEEEeeCCEEEEEeCCCCcEEEEEecC-CCCeeEEe----eCCCEEEEEC--CCceEEEEcCCCCcEEEEEEeee-
Q 023864 159 GEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ-MKDGWGLA----TDGKVLFGSD--GSSMLYQIDPQTLKVIRKDIVRY- 230 (276)
Q Consensus 159 g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~-~~EGWGLT----~Dg~~L~vSD--GS~~L~viDp~t~~vi~~I~V~~- 230 (276)
++.+|+.| .++.++.+|.+|.+++-+++.. ...-.+.. +++..+|+-+ ++.+|+.+|++++..+-.+.+..
T Consensus 10 ~~~V~v~t-~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l 88 (339)
T 2be1_A 10 SDILIAAD-VEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL 88 (339)
T ss_dssp EEEEEEEE-TTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred CCEEEEEe-CCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence 35666666 4788899999999999999753 00111111 1233555544 68899999999986654444431
Q ss_pred -CCEeeee-----eeeeE--EECCEEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 231 -KGREVRN-----LNELE--FIKGEVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 231 -~g~pv~~-----lNELE--~idG~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
+..|+.. ++|++ -.+|.||+.-+ . ..+..||++||++.
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~-~-g~l~ald~~tG~~~ 134 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSM-R-TIMYTINMLNGEII 134 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEECEE-E-EEEEEEETTTCCEE
T ss_pred eeccccccCCCceeecccccccCCEEEEEec-C-CEEEEEECCCCcEE
Confidence 2222221 11110 04778998875 4 68999999998865
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=88.92 E-value=0.23 Score=50.29 Aligned_cols=101 Identities=12% Similarity=-0.011 Sum_probs=76.0
Q ss_pred eEEEEeCCC----C-cEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcE-------------EEEEecC-
Q 023864 129 SVRRVALET----G-KVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNK-------------LEEFTHQ- 189 (276)
Q Consensus 129 ~I~~iDl~t----g-kv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~-------------i~~~~~~- 189 (276)
.|.++|... + ++++-+++|+.|-|.-++.+|..+++..-.+.++.|||.+.+.. .++.+.+
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl 378 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL 378 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence 577788766 2 56778899999888888888999999999999999999886532 3333332
Q ss_pred CCCeeEEeeCCCEEEEEC-CCceEEEEcCCCC----------cEEEEEEeee
Q 023864 190 MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTL----------KVIRKDIVRY 230 (276)
Q Consensus 190 ~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~----------~vi~~I~V~~ 230 (276)
.|-.-+++.+| ..|.|- =+++|..+|.++. .++.++.|..
T Consensus 379 GPlHt~Fd~~G-~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Y 429 (638)
T 3sbq_A 379 GPLHTTFDGRG-NAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHY 429 (638)
T ss_dssp CEEEEEECSSS-EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSS
T ss_pred cccEEEECCCC-ceEeeeeecceEEEEeccHHHHHhcCccCCeeeecccccc
Confidence 22233355566 899998 4899999887664 6899999986
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=88.82 E-value=13 Score=34.78 Aligned_cols=116 Identities=10% Similarity=-0.001 Sum_probs=71.1
Q ss_pred EEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEe-ecCCCceEEEEEEeCCEEEEEEeeCCEEEEEe
Q 023864 98 EFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAIN-QMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYD 176 (276)
Q Consensus 98 ~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~-~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D 176 (276)
.+++. . ...|.| .+..|+.+ .++.|++||..+....... .+....+ .+-..+..+.++ -.++.++++|
T Consensus 84 ~~~lp-~--V~~l~f-d~~~L~v~----~~~~l~v~dv~sl~~~~~~~~~~~~v~--~i~~~~p~~av~-~~dG~L~v~d 152 (388)
T 1xip_A 84 EKEIP-D--VIFVCF-HGDQVLVS----TRNALYSLDLEELSEFRTVTSFEKPVF--QLKNVNNTLVIL-NSVNDLSALD 152 (388)
T ss_dssp EEECT-T--EEEEEE-ETTEEEEE----ESSEEEEEESSSTTCEEEEEECSSCEE--EEEECSSEEEEE-ETTSEEEEEE
T ss_pred EeeCC-C--eeEEEE-CCCEEEEE----cCCcEEEEEchhhhccCccceeeccee--eEEecCCCEEEE-ECCCCEEEEE
Confidence 44663 3 678999 44678876 3368999998765432222 2233333 444455555555 4679999999
Q ss_pred CCCCcEEEEEecCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcE--EEEEEe
Q 023864 177 QNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKV--IRKDIV 228 (276)
Q Consensus 177 ~~tlk~i~~~~~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~v--i~~I~V 228 (276)
.++.+... ..-. --....+++| +.+.-+.+++.+++|++.++ +++|..
T Consensus 153 l~~~~~~~-~~~~-Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~ 202 (388)
T 1xip_A 153 LRTKSTKQ-LAQN-VTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSL 202 (388)
T ss_dssp TTTCCEEE-EEES-EEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECC
T ss_pred ccCCcccc-ccCC-ceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecC
Confidence 98777643 2211 1223345677 55555667788889998887 666633
|
| >3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=81.62 E-value=19 Score=36.07 Aligned_cols=96 Identities=21% Similarity=0.135 Sum_probs=60.9
Q ss_pred CEEEEEeCCC---CcEEEEEe---cC-CCCeeE---Ee--eCCCE-EEEECC------CceEEEEcCCCCcEEEEEEeee
Q 023864 170 KTGFIYDQNN---LNKLEEFT---HQ-MKDGWG---LA--TDGKV-LFGSDG------SSMLYQIDPQTLKVIRKDIVRY 230 (276)
Q Consensus 170 ~~v~V~D~~t---lk~i~~~~---~~-~~EGWG---LT--~Dg~~-L~vSDG------S~~L~viDp~t~~vi~~I~V~~ 230 (276)
+-+|.+|..+ -+++-+|. .+ +++-|+ ++ .+|++ +++.+| ...|+++|++|++++++|.+..
T Consensus 164 ~~~yALDVT~P~~p~~LWe~~~~~~~~LG~t~s~P~I~~~~~g~w~~vfG~GY~~~~~~~~Lyv~d~~tG~li~~i~~~~ 243 (570)
T 3hx6_A 164 KGLFALDVTDPANIKLLWEIGVDQEPDLGYSFPKPTVARLHNGKWAVVTGNGYSSMNDKAALLIIDMETGAITRKLEVTG 243 (570)
T ss_dssp SEEEEEECSSGGGCEEEEEEETTTCTTCCBCCSCCEEEECTTSSEEEEEECCBSCTTCCEEEEEEETTTCCEEEEEEECC
T ss_pred cEEEEEECCCCCCCceeEEECCCCccccCccccCCEEEEecCCCEEEEEccccCCCCCccEEEEEECCCCceEEEEecCC
Confidence 3566677544 66777776 22 344444 23 36675 566776 5699999999999999998863
Q ss_pred CCEeeeeeeeeEEEC-------CEEEEEeCCCCCeEEEEeCCCC
Q 023864 231 KGREVRNLNELEFIK-------GEVWANVWQVWPCIPYAYLQAF 267 (276)
Q Consensus 231 ~g~pv~~lNELE~id-------G~lyANvw~s~d~I~vIDp~T~ 267 (276)
......-|-....+| +.+||.- .. ..|.++|..+.
T Consensus 244 ~~~~~~Gls~~~~~D~d~Dg~~D~~YaGD-l~-GnlWRfDl~~~ 285 (570)
T 3hx6_A 244 RTGVPNGLSSPRLADNNSDGVADYAYAGD-LQ-GNLWRFDLIAG 285 (570)
T ss_dssp STTSCCCEEEEEEECTTSSSBCCEEEEEE-TT-SEEEEEECSCS
T ss_pred CCccCCccccceEEecCCCCceeEEEEEe-CC-CcEEEEEcCCC
Confidence 111111223333342 3699987 45 78999998764
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=80.55 E-value=15 Score=37.20 Aligned_cols=151 Identities=16% Similarity=0.067 Sum_probs=80.7
Q ss_pred eEEE-EecCCE--EE-EEcCCCCCCeEEEEeCCCCcEEEEeecCCCceE-------EEEEEe-CCEEEEEEe--------
Q 023864 108 QGLL-YAENDT--LF-ESTGLYGRSSVRRVALETGKVEAINQMEGSYFG-------EGLTLL-GEKLFQVTW-------- 167 (276)
Q Consensus 108 QGL~-~~~dg~--Ly-eStG~yg~S~I~~iDl~tgkv~~~~~l~~~~Fg-------EGit~~-g~~LyqlTw-------- 167 (276)
.|+. +++|++ || .|.|.-....|+++|++|++.+...-.|..-+| -+++.. ++.+|..+.
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~ 211 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITS 211 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCT
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCc
Confidence 7887 888864 33 577744567799999999997532111111010 233443 567776542
Q ss_pred --eCCEEEEEeCCCCcEEEE--EecC-CCCe--eEEeeCCC----EEEEE---CC-CceEEEEcCCC--CcEEEEEEeee
Q 023864 168 --LQKTGFIYDQNNLNKLEE--FTHQ-MKDG--WGLATDGK----VLFGS---DG-SSMLYQIDPQT--LKVIRKDIVRY 230 (276)
Q Consensus 168 --k~~~v~V~D~~tlk~i~~--~~~~-~~EG--WGLT~Dg~----~L~vS---DG-S~~L~viDp~t--~~vi~~I~V~~ 230 (276)
...+++..-..|-..-.+ |.-+ .... -+.+.|++ .++++ |. .+.++++|+++ .+ ..++.+..
T Consensus 212 ~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~ 290 (711)
T 4hvt_A 212 SLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMPS 290 (711)
T ss_dssp TSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSCT
T ss_pred CCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecCC
Confidence 224555554443321111 1111 0112 23566777 35665 32 57899998764 33 23343333
Q ss_pred CCEeeeeeeeeEEECCEEEEE---eC-------CCCCeEEEEeCCC
Q 023864 231 KGREVRNLNELEFIKGEVWAN---VW-------QVWPCIPYAYLQA 266 (276)
Q Consensus 231 ~g~pv~~lNELE~idG~lyAN---vw-------~s~d~I~vIDp~T 266 (276)
+... .++.+|.+|+- .| .. ..|+++|.++
T Consensus 291 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~ 329 (711)
T 4hvt_A 291 DATL------QGSFKEYVFWLLRSDWKFKSHNIKA-GSLVALHFTD 329 (711)
T ss_dssp TCEE------EEEETTEEEEECSSCEEETTEEECT-TCEEEEEGGG
T ss_pred cceE------eeeECCEEEEEECcccccccccCCC-CeEEEEECCc
Confidence 2221 34668888873 22 45 6799998765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 276 | |||
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.4 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.4 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.39 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.34 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.29 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.23 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.21 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.19 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.14 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.13 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.08 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.08 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.07 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.04 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.98 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.97 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.97 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.96 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.94 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 98.93 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.93 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.92 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.88 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 98.86 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.84 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 98.84 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.8 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.76 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.73 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.73 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.72 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.7 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.69 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.62 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.59 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.51 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 98.44 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.4 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.37 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 98.34 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 98.32 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 98.3 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 98.29 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 98.28 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 98.28 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 98.27 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.23 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.14 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.08 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 97.99 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 97.99 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 97.96 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 97.95 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 97.94 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 97.94 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 97.94 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 97.92 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 97.84 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 97.84 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 97.82 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.74 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 97.73 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.65 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 97.6 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 97.47 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 97.45 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.43 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.35 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 97.2 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 97.02 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 96.99 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.96 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.94 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 96.82 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.79 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 96.75 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.75 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 96.73 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 96.66 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.64 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 96.46 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 96.25 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 96.14 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 95.78 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 95.4 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 95.32 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 94.73 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 94.67 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 94.51 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 94.1 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 93.83 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 92.27 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 92.19 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 91.97 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 91.48 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 90.8 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 87.94 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 80.58 |
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.40 E-value=1.6e-11 Score=101.99 Aligned_cols=143 Identities=15% Similarity=0.143 Sum_probs=116.0
Q ss_pred EEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEE--eCCEEEEEEeeCCEEEEEeCCCCcEEEEEecC-CCCe
Q 023864 117 TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL--LGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ-MKDG 193 (276)
Q Consensus 117 ~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~--~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~-~~EG 193 (276)
.+|++.. +++.|.+||++|++++++++++..+. |+++ +|++||+....++++.+||..+.+.+.+++.. .+++
T Consensus 3 ~~yV~~~--~~~~v~v~D~~t~~~~~~i~~g~~p~--~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~ 78 (301)
T d1l0qa2 3 FAYIANS--ESDNISVIDVTSNKVTATIPVGSNPM--GAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQG 78 (301)
T ss_dssp EEEEEET--TTTEEEEEETTTTEEEEEEECSSSEE--EEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEE
T ss_pred EEEEEEC--CCCEEEEEECCCCeEEEEEECCCCce--EEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccccccc
Confidence 4788655 78899999999999999999998866 5555 56789999999999999999999999999865 3466
Q ss_pred eEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CC-EEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 194 WGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 194 WGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG-~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
..+.+||+.++++. +...+.++|..+.+....+.... ..+.+.+. || .+++..... ..+.+.|..+++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~dg~~~~~~~~~~-~~~~~~~~~~~~~~ 151 (301)
T d1l0qa2 79 VAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK------SPLGLALSPDGKKLYVTNNGD-KTVSVINTVTKAVI 151 (301)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS------SEEEEEECTTSSEEEEEETTT-TEEEEEETTTTEEE
T ss_pred cccccccccccccccccceeeecccccceeeeeccccc------cceEEEeecCCCeeeeeeccc-cceeeeecccccee
Confidence 66788999999877 68899999999999988887653 22334444 44 688888888 89999999996543
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.40 E-value=2.9e-11 Score=100.30 Aligned_cols=165 Identities=16% Similarity=0.190 Sum_probs=128.2
Q ss_pred eeeEEEEEEecCCCCCceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEe
Q 023864 91 YTIQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTW 167 (276)
Q Consensus 91 ~t~~Vv~~~Phd~~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTw 167 (276)
.+.++++++|++.. .+|++|+|||+ ||.+.+ +...|++||+++++.+.+++.+..+ .++++. ++.+++..+
T Consensus 20 ~t~~~~~~i~~g~~--p~~va~spdG~~l~v~~~--~~~~i~v~d~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 93 (301)
T d1l0qa2 20 TSNKVTATIPVGSN--PMGAVISPDGTKVYVANA--HSNDVSIIDTATNNVIATVPAGSSP--QGVAVSPDGKQVYVTNM 93 (301)
T ss_dssp TTTEEEEEEECSSS--EEEEEECTTSSEEEEEEG--GGTEEEEEETTTTEEEEEEECSSSE--EEEEECTTSSEEEEEET
T ss_pred CCCeEEEEEECCCC--ceEEEEeCCCCEEEEEEC--CCCEEEEEECCCCceeeeeeccccc--ccccccccccccccccc
Confidence 35689999998654 46999999975 887655 7789999999999999988877665 455654 568999999
Q ss_pred eCCEEEEEeCCCCcEEEEEecC-CCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-
Q 023864 168 LQKTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI- 244 (276)
Q Consensus 168 k~~~v~V~D~~tlk~i~~~~~~-~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i- 244 (276)
.++.+.++|..+.+.+..+... .+....+++||+.++++. .+..+.++|..+.+.+..+.... .++.+.+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 167 (301)
T d1l0qa2 94 ASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR------SPKGIAVTP 167 (301)
T ss_dssp TTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS------SEEEEEECT
T ss_pred ccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCC------CceEEEeec
Confidence 9999999999999999999865 334556788999998866 57889999999999888877653 22233333
Q ss_pred -CCEEEEEeCCCCCeEEEEeCCCCc
Q 023864 245 -KGEVWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 245 -dG~lyANvw~s~d~I~vIDp~T~~ 268 (276)
++++|+..... ..+.+.+....+
T Consensus 168 ~~~~~~~~~~~~-~~~~~~~~~~~~ 191 (301)
T d1l0qa2 168 DGTKVYVANFDS-MSISVIDTVTNS 191 (301)
T ss_dssp TSSEEEEEETTT-TEEEEEETTTTE
T ss_pred cccceeeecccc-ccccccccccee
Confidence 44688888777 777777777643
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.39 E-value=1.4e-12 Score=109.91 Aligned_cols=153 Identities=10% Similarity=-0.000 Sum_probs=117.8
Q ss_pred EEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEE--eCCEEEEEEeeCCEEEEEeCCCCcEEEEE
Q 023864 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL--LGEKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~--~g~~LyqlTwk~~~v~V~D~~tlk~i~~~ 186 (276)
|++|+++++++.+++ ..+.|++||++|++++.+++++......++++ +|.++|+..-.++.+.+||..+.+++.++
T Consensus 1 g~a~~~~~~~l~~~~--~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~ 78 (346)
T d1jmxb_ 1 GPALKAGHEYMIVTN--YPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA 78 (346)
T ss_dssp CCCCCTTCEEEEEEE--TTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CccCCCCCcEEEEEc--CCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeee
Confidence 778898888877777 67899999999999999999876544456666 56789999999999999999999999988
Q ss_pred ecC--------CCCeeEEeeCCCEEEEEC------------CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEE-EC
Q 023864 187 THQ--------MKDGWGLATDGKVLFGSD------------GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEF-IK 245 (276)
Q Consensus 187 ~~~--------~~EGWGLT~Dg~~L~vSD------------GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~-id 245 (276)
... .+.+..+++||++||+++ ....+.++|.++++..+.+.+...+..+.. +.. .+
T Consensus 79 ~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 155 (346)
T d1jmxb_ 79 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYL---MRAADD 155 (346)
T ss_dssp ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCC---EEECTT
T ss_pred cccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEE---EEecCC
Confidence 743 256778999999999976 255788889888888777766553332221 112 25
Q ss_pred CEEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 246 GEVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 246 G~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
+++|+.. +.+.++|+.+++.+
T Consensus 156 ~~~~~~~----~~~~~~~~~~~~~~ 176 (346)
T d1jmxb_ 156 GSLYVAG----PDIYKMDVKTGKYT 176 (346)
T ss_dssp SCEEEES----SSEEEECTTTCCEE
T ss_pred CEEEEeC----CcceEEEccCCCEE
Confidence 6788753 56889999996654
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.34 E-value=9.4e-11 Score=108.13 Aligned_cols=169 Identities=7% Similarity=-0.100 Sum_probs=126.3
Q ss_pred eeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCc--EEEEeecCCCceEEEEEE----eCCEEEE
Q 023864 91 YTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGK--VEAINQMEGSYFGEGLTL----LGEKLFQ 164 (276)
Q Consensus 91 ~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgk--v~~~~~l~~~~FgEGit~----~g~~Lyq 164 (276)
.+.+++++++... ..+++.|+|||+.+.+++ .+..|++||++|++ ...+++.+..+++..+.. +|++||+
T Consensus 50 ~t~~v~~~~~~g~--~~~~v~fSpDG~~l~~~s--~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~v 125 (432)
T d1qksa2 50 STYEIKTVLDTGY--AVHISRLSASGRYLFVIG--RDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIA 125 (432)
T ss_dssp TTCCEEEEEECSS--CEEEEEECTTSCEEEEEE--TTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEE
T ss_pred CCCcEEEEEeCCC--CeeEEEECCCCCEEEEEc--CCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEE
Confidence 4778999999843 468999999987444455 35789999999886 555666666655433332 4678999
Q ss_pred EEeeCCEEEEEeCCCCcEEEEEecC-----------CCCeeE--EeeCCCEEEEEC-CCceEEEEcCCCCcEEE--EEEe
Q 023864 165 VTWLQKTGFIYDQNNLNKLEEFTHQ-----------MKDGWG--LATDGKVLFGSD-GSSMLYQIDPQTLKVIR--KDIV 228 (276)
Q Consensus 165 lTwk~~~v~V~D~~tlk~i~~~~~~-----------~~EGWG--LT~Dg~~L~vSD-GS~~L~viDp~t~~vi~--~I~V 228 (276)
....++.+.+||.++.+++..++.. .+...+ .++||+.++++. .+++|.++|..+.+..+ +|.+
T Consensus 126 s~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~ 205 (432)
T d1qksa2 126 GAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISA 205 (432)
T ss_dssp EEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEEC
T ss_pred EcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcc
Confidence 9999999999999999999887521 123333 578999999977 58999999999987554 4554
Q ss_pred eeCCEeeeeeeeeEEE-CC-EEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 229 RYKGREVRNLNELEFI-KG-EVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 229 ~~~g~pv~~lNELE~i-dG-~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
+. .+..+.+. || ++|+....+ +.|.+||.++++.+
T Consensus 206 g~------~~~~~~~spdg~~~~va~~~~-~~v~v~d~~~~~~~ 242 (432)
T d1qksa2 206 ER------FLHDGGLDGSHRYFITAANAR-NKLVVIDTKEGKLV 242 (432)
T ss_dssp CS------SEEEEEECTTSCEEEEEEGGG-TEEEEEETTTTEEE
T ss_pred cC------ccccceECCCCCEEEEecccc-ceEEEeecccceEE
Confidence 43 34555565 45 699999899 99999999996544
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.29 E-value=2.6e-10 Score=95.37 Aligned_cols=132 Identities=18% Similarity=0.228 Sum_probs=98.3
Q ss_pred eeEEEEEEecC-CCCCceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCC------CceEEEEEEeCCEEE
Q 023864 92 TIQVVNEFPHD-PRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEG------SYFGEGLTLLGEKLF 163 (276)
Q Consensus 92 t~~Vv~~~Phd-~~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~------~~FgEGit~~g~~Ly 163 (276)
+.+++.++|.. ......++.|+|||+ ||.+++ +.+.|++||++||+++.+..++. .+++..+..+++.+|
T Consensus 20 s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~--~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~ 97 (337)
T d1pbyb_ 20 KMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN--KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLA 97 (337)
T ss_dssp TTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET--TTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEE
T ss_pred CCeEEEEEECCCCCCCccEEEECCCCCEEEEEEC--CCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEE
Confidence 45789999853 334557999999985 777654 56889999999999999887653 233333444567888
Q ss_pred EEEe-----------eCCEEEEEeCCCCcEEEEEecC-CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEE
Q 023864 164 QVTW-----------LQKTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDI 227 (276)
Q Consensus 164 qlTw-----------k~~~v~V~D~~tlk~i~~~~~~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~ 227 (276)
.... ....+.++|..+.+.+.+++.+ .+.+..+++||+++|+.++. +.++|+.+.+++.++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~ 171 (337)
T d1pbyb_ 98 IYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKP 171 (337)
T ss_dssp EEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEEC
T ss_pred EeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEee
Confidence 8876 4678999999999999999865 45678889999999997643 5567777776665543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.23 E-value=5.6e-10 Score=97.57 Aligned_cols=176 Identities=13% Similarity=0.122 Sum_probs=126.0
Q ss_pred CCCCceeeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe-CCEEE
Q 023864 85 DQSPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLF 163 (276)
Q Consensus 85 ~~~~~~~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~-g~~Ly 163 (276)
+.+++....+|+.++|. ..|.+|+++++||+||.+.. ...+|.++|++ |+......++.++. |+++. +++||
T Consensus 10 ~~~~~~~~~~v~~~~p~--~~~~e~iAv~pdG~l~vt~~--~~~~I~~i~p~-g~~~~~~~~~~~~~--gla~~~dG~l~ 82 (302)
T d2p4oa1 10 DKPIELAPAKIITSFPV--NTFLENLASAPDGTIFVTNH--EVGEIVSITPD-GNQQIHATVEGKVS--GLAFTSNGDLV 82 (302)
T ss_dssp TSCBCCCCEEEEEEECT--TCCEEEEEECTTSCEEEEET--TTTEEEEECTT-CCEEEEEECSSEEE--EEEECTTSCEE
T ss_pred cCcccCCcccEEEECCC--CCCcCCEEECCCCCEEEEeC--CCCEEEEEeCC-CCEEEEEcCCCCcc--eEEEcCCCCeE
Confidence 34455667799999995 55999999999999999755 78899999986 55555667776644 67776 46899
Q ss_pred EEEeeCCEEEEEeCCCCcE-EEEE-ecC-CCCeeEEee-CCCEEEEEC-CCceEEEEcCCCCcEEEEEEee-----eCCE
Q 023864 164 QVTWLQKTGFIYDQNNLNK-LEEF-THQ-MKDGWGLAT-DGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVR-----YKGR 233 (276)
Q Consensus 164 qlTwk~~~v~V~D~~tlk~-i~~~-~~~-~~EGWGLT~-Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~-----~~g~ 233 (276)
++++.++.+.+++..+... ...+ ..+ .....+++. .+..+|++| +...++.+|+.+.....-..-. ....
T Consensus 83 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (302)
T d2p4oa1 83 ATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSES 162 (302)
T ss_dssp EEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTC
T ss_pred EEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccC
Confidence 9999999999988654322 1222 222 233445553 234778887 7889999999987543221111 1122
Q ss_pred eeeeeeeeEEECCEEEEEeCCCCCeEEEEeCCCCc
Q 023864 234 EVRNLNELEFIKGEVWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 234 pv~~lNELE~idG~lyANvw~s~d~I~vIDp~T~~ 268 (276)
.....|.+.+.++.+|+..... ++|.++|.....
T Consensus 163 ~~~~~ngi~~~~~~l~~~~~~~-~~i~~~~~~~~~ 196 (302)
T d2p4oa1 163 VFPAANGLKRFGNFLYVSNTEK-MLLLRIPVDSTD 196 (302)
T ss_dssp CSCSEEEEEEETTEEEEEETTT-TEEEEEEBCTTS
T ss_pred cccccccccccCCceeeecCCC-CeEEeccccccc
Confidence 4457788999999999999999 999999987644
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.21 E-value=1.9e-09 Score=97.31 Aligned_cols=169 Identities=5% Similarity=-0.082 Sum_probs=122.8
Q ss_pred eeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEE------eCCEEEE
Q 023864 91 YTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL------LGEKLFQ 164 (276)
Q Consensus 91 ~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~------~g~~Lyq 164 (276)
.+.+++.++++.. -..|+.|+|||+.+.+++ .+..|++||++|++......++...-.+++.. +|++||+
T Consensus 50 ~t~~~~~~l~~g~--~~~~vafSPDGk~l~~~~--~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v 125 (426)
T d1hzua2 50 DSKKIVKVIDTGY--AVHISRMSASGRYLLVIG--RDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIA 125 (426)
T ss_dssp TTCSEEEEEECCS--SEEEEEECTTSCEEEEEE--TTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEE
T ss_pred CCCcEEEEEeCCC--CeeEEEECCCCCEEEEEe--CCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEE
Confidence 3678999999853 368999999987444555 45689999999998554443433333455554 4678999
Q ss_pred EEeeCCEEEEEeCCCCcEEEEEecC-----------CCCee--EEeeCCCEEEEEC-CCceEEEEcCCCCcE--EEEEEe
Q 023864 165 VTWLQKTGFIYDQNNLNKLEEFTHQ-----------MKDGW--GLATDGKVLFGSD-GSSMLYQIDPQTLKV--IRKDIV 228 (276)
Q Consensus 165 lTwk~~~v~V~D~~tlk~i~~~~~~-----------~~EGW--GLT~Dg~~L~vSD-GS~~L~viDp~t~~v--i~~I~V 228 (276)
..+.++.+.++|.++.+.+..+... .+... ..++|+..+++++ +++.+.+++..+... +..+..
T Consensus 126 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 205 (426)
T d1hzua2 126 GAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA 205 (426)
T ss_dssp EEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEEC
T ss_pred eecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEecc
Confidence 9999999999999999988776421 12222 3467889999988 688999988777653 344554
Q ss_pred eeCCEeeeeeeeeEEE--CCEEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 229 RYKGREVRNLNELEFI--KGEVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 229 ~~~g~pv~~lNELE~i--dG~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
+. .+.++.+. +.++|+..... +.+.++|.++++.+
T Consensus 206 ~~------~~~~~~~~~~g~~~~~a~~~~-~~~~~~~~~~~~~~ 242 (426)
T d1hzua2 206 AP------FLADGGWDSSHRYFMTAANNS-NKVAVIDSKDRRLS 242 (426)
T ss_dssp CS------SEEEEEECTTSCEEEEEETTC-SEEEEEETTTTEEE
T ss_pred CC------ccEeeeECCCCcEEEeeeecc-cceeeeecccccEE
Confidence 43 45566665 34699999999 99999999996654
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.19 E-value=1.2e-10 Score=102.70 Aligned_cols=173 Identities=6% Similarity=-0.067 Sum_probs=114.1
Q ss_pred eeEEEEEEecCCC------CCceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCC--ceEE---------
Q 023864 92 TIQVVNEFPHDPR------AFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGS--YFGE--------- 153 (276)
Q Consensus 92 t~~Vv~~~Phd~~------aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~--~FgE--------- 153 (276)
+.+++.+++.... ....++.|++||+ ||.+.. +...|..||++++++...++++.. .++.
T Consensus 105 t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 182 (368)
T d1mdah_ 105 TFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLF--GSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGS 182 (368)
T ss_dssp TCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEEC--SSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCC
T ss_pred CCcEeeeecCCccceecccCCccceEECCCCCEEEEEeC--CCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEc
Confidence 3456666653211 2234799999985 887654 778999999999999887765421 0111
Q ss_pred ----------------------------------------EEE--EeCCEEEEEEeeCCEEEEEeCCCCcEEEEEe----
Q 023864 154 ----------------------------------------GLT--LLGEKLFQVTWLQKTGFIYDQNNLNKLEEFT---- 187 (276)
Q Consensus 154 ----------------------------------------Git--~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~---- 187 (276)
|.. ..++++|+..|..+.+.+++..+........
T Consensus 183 ~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (368)
T d1mdah_ 183 CPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFR 262 (368)
T ss_dssp CTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEE
T ss_pred CCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeec
Confidence 111 1234555555555555555554443322111
Q ss_pred cCCCCeeEEeeCCCEEEEEC---------CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCE--EEEEeCCC
Q 023864 188 HQMKDGWGLATDGKVLFGSD---------GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGE--VWANVWQV 255 (276)
Q Consensus 188 ~~~~EGWGLT~Dg~~L~vSD---------GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~--lyANvw~s 255 (276)
-...+..++.+|++.+|+.. +..+|+++|++|++.++++.++. .++-+.+. ||+ |||..+.+
T Consensus 263 ~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~------~~~~~a~spDG~~~ly~s~~~~ 336 (368)
T d1mdah_ 263 SAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH------DSDAIIAAQDGASDNYANSAGT 336 (368)
T ss_dssp ECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE------EECEEEECCSSSCEEEEEETTT
T ss_pred CCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCC------ceeEEEECCCCCEEEEEEeCCC
Confidence 11246678899999999853 24579999999999999998763 34456666 664 89999999
Q ss_pred CCeEEEEeCCCCcEEEEEE
Q 023864 256 WPCIPYAYLQAFGSSLVYV 274 (276)
Q Consensus 256 ~d~I~vIDp~T~~v~l~~~ 274 (276)
+.|.++|++||++ ++.|
T Consensus 337 -~~v~v~D~~tgk~-~~~i 353 (368)
T d1mdah_ 337 -EVLDIYDAASDQD-QSSV 353 (368)
T ss_dssp -TEEEEEESSSCEE-EEEC
T ss_pred -CeEEEEECCCCCE-EEEE
Confidence 9999999999665 4654
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.14 E-value=1.2e-09 Score=91.16 Aligned_cols=135 Identities=13% Similarity=0.010 Sum_probs=104.8
Q ss_pred CCCeEEEEeCCCCcEEEEeecCCC-ceEEEEEE--eCCEEEEEEeeCCEEEEEeCCCCcEEEEEecC-------CCCeeE
Q 023864 126 GRSSVRRVALETGKVEAINQMEGS-YFGEGLTL--LGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ-------MKDGWG 195 (276)
Q Consensus 126 g~S~I~~iDl~tgkv~~~~~l~~~-~FgEGit~--~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~-------~~EGWG 195 (276)
.++.|++||+++++++..++++.. ..+-++++ +|+.||+..-.++.+.+||.+|.+.+.+++.. ...+..
T Consensus 9 ~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~ 88 (337)
T d1pbyb_ 9 RPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAA 88 (337)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEE
T ss_pred CCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEE
Confidence 578999999999999999988643 33345555 46789999889999999999999999998743 235667
Q ss_pred EeeCCCEEEEEC------------CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CC-EEEEEeCCCCCeEEE
Q 023864 196 LATDGKVLFGSD------------GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVWANVWQVWPCIPY 261 (276)
Q Consensus 196 LT~Dg~~L~vSD------------GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG-~lyANvw~s~d~I~v 261 (276)
+++||+.+|+++ +...+.++|.++.++++.+.+.. .++.+.+. || ++|+.. +.+.+
T Consensus 89 ~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~~~~----~~~~~ 158 (337)
T d1pbyb_ 89 LSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR------QITMLAWARDGSKLYGLG----RDLHV 158 (337)
T ss_dssp ECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS------SCCCEEECTTSSCEEEES----SSEEE
T ss_pred EcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccC------CceEEEEcCCCCEEEEEc----CCcce
Confidence 899999999875 35689999999999999988765 23344444 44 588764 55788
Q ss_pred EeCCCCcEE
Q 023864 262 AYLQAFGSS 270 (276)
Q Consensus 262 IDp~T~~v~ 270 (276)
+|+.++++.
T Consensus 159 ~d~~~~~~~ 167 (337)
T d1pbyb_ 159 MDPEAGTLV 167 (337)
T ss_dssp EETTTTEEE
T ss_pred eeeecCcEE
Confidence 999996654
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.13 E-value=1.7e-09 Score=99.61 Aligned_cols=149 Identities=11% Similarity=0.009 Sum_probs=109.5
Q ss_pred EEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCc--EEEEEecC-CCCe
Q 023864 117 TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLN--KLEEFTHQ-MKDG 193 (276)
Q Consensus 117 ~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk--~i~~~~~~-~~EG 193 (276)
.++++.- +...|..||.+|++++++++.+..+++.-++.+|+++|+.. .++.+.+||.+|.+ .+.+++.. .++|
T Consensus 33 ~~~v~~~--d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s-~dg~v~~~d~~t~~~~~~~~i~~~~~~~~ 109 (432)
T d1qksa2 33 LFSVTLR--DAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIG-RDGKVNMIDLWMKEPTTVAEIKIGSEARS 109 (432)
T ss_dssp EEEEEET--TTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEE-TTSEEEEEETTSSSCCEEEEEECCSEEEE
T ss_pred EEEEEEc--CCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEc-CCCCEEEEEeeCCCceEEEEEecCCCCCC
Confidence 3456544 88999999999999999999988766555555678998876 57999999988776 55667654 2345
Q ss_pred eEE----eeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeee---CCEee---eeeeeeEEE-CC-EEEEEeCCCCCeEE
Q 023864 194 WGL----ATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRY---KGREV---RNLNELEFI-KG-EVWANVWQVWPCIP 260 (276)
Q Consensus 194 WGL----T~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~---~g~pv---~~lNELE~i-dG-~lyANvw~s~d~I~ 260 (276)
..+ ++||++||+++ ....|.++|.+++++++.+.... +...+ .+...+.+. || +++++.+.+ +.|.
T Consensus 110 ~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~-~~i~ 188 (432)
T d1qksa2 110 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET-GKIL 188 (432)
T ss_dssp EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT-TEEE
T ss_pred eEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccC-CeEE
Confidence 554 46999999988 58899999999999998887532 11111 111111121 34 688999999 9999
Q ss_pred EEeCCCCcE
Q 023864 261 YAYLQAFGS 269 (276)
Q Consensus 261 vIDp~T~~v 269 (276)
+||..+++.
T Consensus 189 ~~d~~~~~~ 197 (432)
T d1qksa2 189 LVDYTDLNN 197 (432)
T ss_dssp EEETTCSSE
T ss_pred EEEccCCCc
Confidence 999998763
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.08 E-value=1.3e-09 Score=103.69 Aligned_cols=145 Identities=16% Similarity=0.088 Sum_probs=108.9
Q ss_pred ecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEE--eCCEEEEEEeeCCEE-----------------
Q 023864 113 AENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL--LGEKLFQVTWLQKTG----------------- 172 (276)
Q Consensus 113 ~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~--~g~~LyqlTwk~~~v----------------- 172 (276)
.+||+ ||++.- +.++|.+||++|+++.+.+.+|...-..|+++ +++++|++.+.++.+
T Consensus 80 tpDGr~lfV~d~--~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~ 157 (441)
T d1qnia2 80 RYDGKYLFINDK--ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTM 157 (441)
T ss_dssp EEEEEEEEEEET--TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEE
T ss_pred cCCCCEEEEEcC--CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccce
Confidence 46665 887644 89999999999999988888775444556666 578999999888766
Q ss_pred -EEEeCCCCcEEEEEecC-CCCeeEEeeCCCEEEEEC-CCceEE------------------------------------
Q 023864 173 -FIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSD-GSSMLY------------------------------------ 213 (276)
Q Consensus 173 -~V~D~~tlk~i~~~~~~-~~EGWGLT~Dg~~L~vSD-GS~~L~------------------------------------ 213 (276)
.++|+++.+++.+++.+ .+++.++++||+++|+++ +++.+.
T Consensus 158 ~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~ 237 (441)
T d1qnia2 158 FTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDS 237 (441)
T ss_dssp EEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTC
T ss_pred EEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCC
Confidence 55999999999999876 678999999999999986 443333
Q ss_pred ---EEc-CCCCcEEEEEEeeeCCEeeeeeeeeEEE-CC-EEEEEeCCCCCeEEEEeCCC
Q 023864 214 ---QID-PQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVWANVWQVWPCIPYAYLQA 266 (276)
Q Consensus 214 ---viD-p~t~~vi~~I~V~~~g~pv~~lNELE~i-dG-~lyANvw~s~d~I~vIDp~T 266 (276)
++| ..+.+++++|.|+...+ -+... || ++||+.+.+ +.|.|||.++
T Consensus 238 ~v~vvd~~~~~~v~~~IPvgksPh------Gv~vSPDGkyl~~~~~~~-~tvsv~d~~k 289 (441)
T d1qnia2 238 KVPVVDGRGESEFTRYIPVPKNPH------GLNTSPDGKYFIANGKLS-PTVSVIAIDK 289 (441)
T ss_dssp CCCEEECSSSCSSEEEECCBSSCC------CEEECTTSCEEEEECTTS-SBEEEEEGGG
T ss_pred CcEEEEcccCCceEEEEeCCCCcc------CceECCCCCEEEEeCCcC-CcEEEEEeeh
Confidence 333 34456666666654211 11122 55 699999999 9999999765
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.08 E-value=7.3e-09 Score=91.83 Aligned_cols=166 Identities=10% Similarity=0.103 Sum_probs=110.3
Q ss_pred CCCceEEEEecCCEEEEEc-C-CCCCCeEEEEeCCCCcEEEEee-cCCCceEEEEEEe-CCEEEEEEeeC------CEEE
Q 023864 104 RAFTQGLLYAENDTLFEST-G-LYGRSSVRRVALETGKVEAINQ-MEGSYFGEGLTLL-GEKLFQVTWLQ------KTGF 173 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeSt-G-~yg~S~I~~iDl~tgkv~~~~~-l~~~~FgEGit~~-g~~LyqlTwk~------~~v~ 173 (276)
.....||++++||+||++. + ......|..+|..++.+..... .......-+++++ ++++|+.+... +.++
T Consensus 81 ~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~ 160 (319)
T d2dg1a1 81 KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVY 160 (319)
T ss_dssp SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEE
T ss_pred CCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeE
Confidence 3445799999999999753 2 2235678899998887755543 3334456677776 47899988653 4588
Q ss_pred EEeCCCCcEEEE-EecCCCCeeEEeeCCCEEEEEC-CCceEEEEcCCC-CcEEEE----EEeeeCCEeeeeeeeeEEE-C
Q 023864 174 IYDQNNLNKLEE-FTHQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQT-LKVIRK----DIVRYKGREVRNLNELEFI-K 245 (276)
Q Consensus 174 V~D~~tlk~i~~-~~~~~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t-~~vi~~----I~V~~~g~pv~~lNELE~i-d 245 (276)
.+|++......- -....+.|.++++||+.||++| ..++|+.+|.+. ...... ......+. ..+.-|.+. +
T Consensus 161 ~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~--~~PdGl~vD~~ 238 (319)
T d2dg1a1 161 YVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH--EGPDSCCIDSD 238 (319)
T ss_dssp EECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS--SEEEEEEEBTT
T ss_pred EEecccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCc--cceeeeeEcCC
Confidence 888875432211 1233468899999999999999 689999997542 222211 11111111 123446664 7
Q ss_pred CEEEEEeCCCCCeEEEEeCCCCcEEEEEE
Q 023864 246 GEVWANVWQVWPCIPYAYLQAFGSSLVYV 274 (276)
Q Consensus 246 G~lyANvw~s~d~I~vIDp~T~~v~l~~~ 274 (276)
|.||++.|.. ++|.+|||+ |+ .|+.|
T Consensus 239 G~l~Va~~~~-g~V~~~~p~-G~-~l~~i 264 (319)
T d2dg1a1 239 DNLYVAMYGQ-GRVLVFNKR-GY-PIGQI 264 (319)
T ss_dssp CCEEEEEETT-TEEEEECTT-SC-EEEEE
T ss_pred CCEEEEEcCC-CEEEEECCC-Cc-EEEEE
Confidence 8999999999 999999985 45 44555
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.07 E-value=2.4e-08 Score=86.04 Aligned_cols=133 Identities=8% Similarity=-0.065 Sum_probs=102.1
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCE-EEEEcCCC-------CCCeEEEEeCCCCcEEEEeecCCC--------ceEEEE
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLY-------GRSSVRRVALETGKVEAINQMEGS--------YFGEGL 155 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~-LyeStG~y-------g~S~I~~iDl~tgkv~~~~~l~~~--------~FgEGi 155 (276)
+.+++.+++.. +..++.|+|||+ ||.+.... ..+.|.+||+++++++..+..+.. +.+.-+
T Consensus 56 tg~~~~~~~~~---~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (373)
T d2madh_ 56 SGSILGHVNGG---FLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNAN 132 (373)
T ss_pred CCCEEEEEeCC---CCccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEE
Confidence 66788888752 234899999985 66653321 236799999999999888766632 233445
Q ss_pred EEeCCEEEEEEeeC-CEEEEEeCCCCcEEEEEecCCCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEee
Q 023864 156 TLLGEKLFQVTWLQ-KTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVR 229 (276)
Q Consensus 156 t~~g~~LyqlTwk~-~~v~V~D~~tlk~i~~~~~~~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~ 229 (276)
+.+++.+|+..|.. +.+.++|..+.+.++....+ .+..+++||+.+|++. ++.++.++|.++.+..+.....
T Consensus 133 s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~ 206 (373)
T d2madh_ 133 TPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSP--TCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGA 206 (373)
T ss_pred EeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccc--eeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeee
Confidence 55678999998864 67788999999998888764 7888999999999877 6889999999999888776553
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.04 E-value=1.8e-10 Score=109.83 Aligned_cols=143 Identities=13% Similarity=-0.053 Sum_probs=109.8
Q ss_pred EEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC-----------------------------Cc--eEEEEEEeCCEEEEE
Q 023864 117 TLFESTGLYGRSSVRRVALETGKVEAINQMEG-----------------------------SY--FGEGLTLLGEKLFQV 165 (276)
Q Consensus 117 ~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~-----------------------------~~--FgEGit~~g~~Lyql 165 (276)
.+|.|.| -...|++||+.++++++++++-. ++ .....+.+|..||+.
T Consensus 12 y~f~Sgg--~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~ 89 (441)
T d1qnia2 12 YGFWSGG--HQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFIN 89 (441)
T ss_dssp EEEEECB--TTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEE
T ss_pred EEEEeCC--CCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEE
Confidence 3677777 57789999999999999986621 11 111124678899999
Q ss_pred EeeCCEEEEEeCCCCcEEEEEecC---CCCeeEEeeCCCEEEEEC-CCceE------------------EEEcCCCCcEE
Q 023864 166 TWLQKTGFIYDQNNLNKLEEFTHQ---MKDGWGLATDGKVLFGSD-GSSML------------------YQIDPQTLKVI 223 (276)
Q Consensus 166 Twk~~~v~V~D~~tlk~i~~~~~~---~~EGWGLT~Dg~~L~vSD-GS~~L------------------~viDp~t~~vi 223 (276)
++.++++.++|++|++..+.+..+ .+.|..+++||+++|+.+ +++.+ ..+|++++++.
T Consensus 90 d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~ 169 (441)
T d1qnia2 90 DKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVA 169 (441)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEE
T ss_pred cCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceee
Confidence 999999999999999998877654 456677889999999976 45554 56999999999
Q ss_pred EEEEeeeCCEeeeeeeeeEEE--CCEEEEEeCCCCCeEEEEeCCCCc
Q 023864 224 RKDIVRYKGREVRNLNELEFI--KGEVWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 224 ~~I~V~~~g~pv~~lNELE~i--dG~lyANvw~s~d~I~vIDp~T~~ 268 (276)
.+|.|.. ++..+.+. ++++|+++..+ +.+++||..+.+
T Consensus 170 ~qI~v~~------~p~~v~~spdGk~a~vt~~ns-e~~~~id~~t~~ 209 (441)
T d1qnia2 170 WQVIVDG------NLDNTDADYTGKYATSTCYNS-ERAVDLAGTMRN 209 (441)
T ss_dssp EEEEESS------CCCCEEECSSSSEEEEEESCT-TCCSSHHHHTCS
T ss_pred EEEecCC------CccceEECCCCCEEEEEecCC-CceEEEeccCcc
Confidence 9999974 23333333 45799999999 888888877744
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.98 E-value=8.3e-09 Score=88.23 Aligned_cols=153 Identities=8% Similarity=0.113 Sum_probs=107.4
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEEEEEeeCCEEEEEeCCCCcE
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNK 182 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~LyqlTwk~~~v~V~D~~tlk~ 182 (276)
.....|++++++|.||... ++.+.+.+++...... .......-..+.||++.. +++|++.+.+++++++|.++...
T Consensus 97 ~~~p~~iavd~~g~i~v~d--~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~ 173 (260)
T d1rwia_ 97 LNYPEGLAVDTQGAVYVAD--RGNNRVVKLAAGSKTQ-TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ 173 (260)
T ss_dssp CCSEEEEEECTTCCEEEEE--GGGTEEEEECTTCSSC-EECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred eeecccccccccceeEeec--ccccccccccccccee-eeeeecccCCcceeeecCCCCEeeecccccccccccccccee
Confidence 3455799999999999763 5888899998876543 233333334456888864 68999999999999999886544
Q ss_pred EEEEecCCCCeeEEeeCCC-EEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCCCCCeE
Q 023864 183 LEEFTHQMKDGWGLATDGK-VLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQVWPCI 259 (276)
Q Consensus 183 i~~~~~~~~EGWGLT~Dg~-~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~s~d~I 259 (276)
......+....+||+-|.+ .||++| +.++|+.+++.+... ..+. . ..+.++.-|.+. +|.||++.|.. ++|
T Consensus 174 ~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-~~~~--~--~~~~~P~~i~~d~~g~l~vad~~~-~rI 247 (260)
T d1rwia_ 174 VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-TVLP--F--TGLNTPLAVAVDSDRTVYVADRGN-DRV 247 (260)
T ss_dssp EECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC-EECC--C--CSCCCEEEEEECTTCCEEEEEGGG-TEE
T ss_pred eeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE-EEEc--c--CCCCCeEEEEEeCCCCEEEEECCC-CEE
Confidence 3222122356777776543 799999 688999999876532 1111 1 123345556666 68999999999 999
Q ss_pred EEEeCC
Q 023864 260 PYAYLQ 265 (276)
Q Consensus 260 ~vIDp~ 265 (276)
.+|++.
T Consensus 248 ~~i~~~ 253 (260)
T d1rwia_ 248 VKLTSL 253 (260)
T ss_dssp EEECCC
T ss_pred EEEeCC
Confidence 999975
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.97 E-value=2.1e-08 Score=87.31 Aligned_cols=162 Identities=15% Similarity=0.209 Sum_probs=117.5
Q ss_pred CceEEEEecCCEEEEEcCCCCCCeEEEEeCC--CCcEEEEeecCCCceEEEEEEe-CCEEEEEEeeCCEEEEEeCCCCcE
Q 023864 106 FTQGLLYAENDTLFESTGLYGRSSVRRVALE--TGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNLNK 182 (276)
Q Consensus 106 FTQGL~~~~dg~LyeStG~yg~S~I~~iDl~--tgkv~~~~~l~~~~FgEGit~~-g~~LyqlTwk~~~v~V~D~~tlk~ 182 (276)
...||+|++||+||.+. ++.+.+.++++. .++......++..-+.-|++++ ++++|+.+...+.++.+|+++...
T Consensus 69 ~~~gla~~~dG~l~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~ 146 (302)
T d2p4oa1 69 KVSGLAFTSNGDLVATG--WNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG 146 (302)
T ss_dssp EEEEEEECTTSCEEEEE--ECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE
T ss_pred CcceEEEcCCCCeEEEe--cCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcc
Confidence 45699999999999874 477778777765 4556555567777788899986 589999999999999999887653
Q ss_pred EEEEe----------cCCCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEE
Q 023864 183 LEEFT----------HQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWA 250 (276)
Q Consensus 183 i~~~~----------~~~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyA 250 (276)
.--.. -....+.|++.|++.||+++ +..+|+.+|...........+..++ ..+.-|.+. ||.||+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~pdgia~d~dG~l~v 223 (302)
T d2p4oa1 147 SIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ---TNIDDFAFDVEGNLYG 223 (302)
T ss_dssp EEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES---CCCSSEEEBTTCCEEE
T ss_pred eeEecCCccceeeccCcccccccccccCCceeeecCCCCeEEeccccccccccccccccCC---CCCcceEECCCCCEEE
Confidence 32211 01245678999999999999 7999999997765544333332111 123345564 789999
Q ss_pred EeCCCCCeEEEEeCCCCcEEEEE
Q 023864 251 NVWQVWPCIPYAYLQAFGSSLVY 273 (276)
Q Consensus 251 Nvw~s~d~I~vIDp~T~~v~l~~ 273 (276)
..+.. +.|.+|+|+.....++.
T Consensus 224 a~~~~-~~V~~i~p~G~~~~~~~ 245 (302)
T d2p4oa1 224 ATHIY-NSVVRIAPDRSTTIIAQ 245 (302)
T ss_dssp ECBTT-CCEEEECTTCCEEEEEC
T ss_pred EEcCC-CcEEEECCCCCEEEEEe
Confidence 99999 99999999875445543
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.97 E-value=3.5e-08 Score=84.97 Aligned_cols=154 Identities=3% Similarity=-0.173 Sum_probs=112.0
Q ss_pred ceEEEEecCC-EEEEEcCCC--CCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEee---------CCEEEE
Q 023864 107 TQGLLYAEND-TLFESTGLY--GRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL---------QKTGFI 174 (276)
Q Consensus 107 TQGL~~~~dg-~LyeStG~y--g~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk---------~~~v~V 174 (276)
+..++++||| ++|.+.-.+ +...|.++|.++|+++.+++.+..+ +..++.+|.+||+.+.. .+.+.+
T Consensus 23 ~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~-~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v 101 (373)
T d2madh_ 23 TNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEV 101 (373)
T ss_pred ccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc-cEEEcCCCCEEEEEeecCCcccccccceEEEE
Confidence 3467788997 477753322 4467999999999999987766443 34455567899998764 478999
Q ss_pred EeCCCCcEEEEEecC---------CCCeeEEeeCCCEEEEEC--CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEE
Q 023864 175 YDQNNLNKLEEFTHQ---------MKDGWGLATDGKVLFGSD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEF 243 (276)
Q Consensus 175 ~D~~tlk~i~~~~~~---------~~EGWGLT~Dg~~L~vSD--GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~ 243 (276)
||..+++++.++..+ .+.+..+++||+.+++.+ +.+.+.++|.++.++.....+.. +..+ .
T Consensus 102 ~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------s 173 (373)
T d2madh_ 102 FDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPT-CYHI-------H 173 (373)
T ss_pred EECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccce-eEEE-------e
Confidence 999999999888643 245677899999887754 67889999999998877666532 1111 1
Q ss_pred ECC-EEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 244 IKG-EVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 244 idG-~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
.+| .+|+....+ +.+.++|.++++..
T Consensus 174 ~~g~~~~v~~~~d-g~~~~~~~~~~~~~ 200 (373)
T d2madh_ 174 PGAPSTFYLLCAQ-GGLAKTDHAGGAAG 200 (373)
T ss_pred cCCCcEEEEEcCC-CeEEEEEcCCceee
Confidence 234 588888788 99999998886543
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.96 E-value=4.8e-08 Score=83.05 Aligned_cols=94 Identities=12% Similarity=0.032 Sum_probs=66.3
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCE-EEEEcCCC-------CCCeEEEEeCCCCcEEEEeecCC--------CceEEEE
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLY-------GRSSVRRVALETGKVEAINQMEG--------SYFGEGL 155 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~-LyeStG~y-------g~S~I~~iDl~tgkv~~~~~l~~--------~~FgEGi 155 (276)
+.+++.+++-. +..+++|+|||+ ||..+..+ ....|++||++++++++.+.++. .+.+..+
T Consensus 37 tg~~~~~~~~g---~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (355)
T d2bbkh_ 37 AGRVIGMIDGG---FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSL 113 (355)
T ss_dssp TTEEEEEEEEC---SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEE
T ss_pred CCcEEEEEECC---CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEE
Confidence 44678888752 223899999986 77643211 24679999999999998876542 3343445
Q ss_pred EEeCCEEEEEEee-CCEEEEEeCCCCcEEEEEec
Q 023864 156 TLLGEKLFQVTWL-QKTGFIYDQNNLNKLEEFTH 188 (276)
Q Consensus 156 t~~g~~LyqlTwk-~~~v~V~D~~tlk~i~~~~~ 188 (276)
+.+++++|+.++. +..+.++|..+.+.+++++.
T Consensus 114 s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (355)
T d2bbkh_ 114 TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV 147 (355)
T ss_dssp CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred ecCCCeeEEecCCCCceeeeeecCCCcEeeEEec
Confidence 5567889988875 46788899999988877653
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.94 E-value=1.6e-08 Score=86.06 Aligned_cols=152 Identities=11% Similarity=-0.068 Sum_probs=108.4
Q ss_pred ecCC-EEEEEcCC--CCCCeEEEEeCCCCcEEEEeecCCCceEEEEEE--eCCEEEEEEe---------eCCEEEEEeCC
Q 023864 113 AEND-TLFESTGL--YGRSSVRRVALETGKVEAINQMEGSYFGEGLTL--LGEKLFQVTW---------LQKTGFIYDQN 178 (276)
Q Consensus 113 ~~dg-~LyeStG~--yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~--~g~~LyqlTw---------k~~~v~V~D~~ 178 (276)
+||| ++|++... ...+.|.+||.++|+++.+++.+..+ ++++ ++++||+.+. +++.+.+||.+
T Consensus 10 spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~---~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~ 86 (355)
T d2bbkh_ 10 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP---NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 86 (355)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC---EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred CCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC---ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECC
Confidence 5675 58876542 23567999999999999998877654 4555 5678999874 46789999999
Q ss_pred CCcEEEEEecC---------CCCeeEEeeCCCEEEEECC--CceEEEEcCCCCcEEEEEEeeeCCE--eeeeeeeeEE-E
Q 023864 179 NLNKLEEFTHQ---------MKDGWGLATDGKVLFGSDG--SSMLYQIDPQTLKVIRKDIVRYKGR--EVRNLNELEF-I 244 (276)
Q Consensus 179 tlk~i~~~~~~---------~~EGWGLT~Dg~~L~vSDG--S~~L~viDp~t~~vi~~I~V~~~g~--pv~~lNELE~-i 244 (276)
+++.++++..+ .+.+..+++||+++++.+. ...++++|.+++++++++.+..... +.....-+.+ .
T Consensus 87 t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (355)
T d2bbkh_ 87 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCR 166 (355)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEET
T ss_pred CCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcC
Confidence 99999998642 2456679999999999763 5689999999999999988753111 1111111112 2
Q ss_pred CC-EEEEEeCCCCCeEEEEeCCCCc
Q 023864 245 KG-EVWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 245 dG-~lyANvw~s~d~I~vIDp~T~~ 268 (276)
|| .+++..+.. +.+.+++.++.+
T Consensus 167 dg~~~~v~~~~~-~~~~~~~~~~~~ 190 (355)
T d2bbkh_ 167 DGSLAKVAFGTE-GTPEITHTEVFH 190 (355)
T ss_dssp TSCEEEEECCSS-SCCEEEECCCCS
T ss_pred CCCEEEEEecCC-CeEEEEeccccc
Confidence 44 477777777 777777777643
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=98.93 E-value=4e-08 Score=82.29 Aligned_cols=168 Identities=8% Similarity=-0.021 Sum_probs=111.8
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCC----cEEEEeecCCCceEEEEEEeCCEEEEEE
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETG----KVEAINQMEGSYFGEGLTLLGEKLFQVT 166 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tg----kv~~~~~l~~~~FgEGit~~g~~LyqlT 166 (276)
..+++++++|+... ++|+|+|||+ ||.++. ++..|+.|+++++ ++......+..+.+..+..+|+.||+..
T Consensus 26 ~l~~~~~~~~~~~v--~~la~spDG~~L~v~~~--~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~ 101 (333)
T d1ri6a_ 26 ALTLTQVVDVPGQV--QPMVVSPDKRYLYVGVR--PEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGS 101 (333)
T ss_dssp CEEEEEEEECSSCC--CCEEECTTSSEEEEEET--TTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEE
T ss_pred CeEEEEEEcCCCCE--eEEEEeCCCCEEEEEEC--CCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecc
Confidence 45788999985443 6999999985 887655 7788999887754 2334445666666544555578999999
Q ss_pred eeCCEEEEEeCCCCcEEEEEecC----CCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeee-CCEeeeeeee
Q 023864 167 WLQKTGFIYDQNNLNKLEEFTHQ----MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRY-KGREVRNLNE 240 (276)
Q Consensus 167 wk~~~v~V~D~~tlk~i~~~~~~----~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~-~g~pv~~lNE 240 (276)
+.++.+.+++............. .+.+..+++|++.+++.+ +...|.++|..+........... ....-..+..
T Consensus 102 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~ 181 (333)
T d1ri6a_ 102 YNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRH 181 (333)
T ss_dssp TTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEE
T ss_pred cCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccE
Confidence 99999999988777665554321 356678999999999987 78889998877754433322211 0001112344
Q ss_pred eEEEC--CEEEEEeCCCCCeEEEEeC
Q 023864 241 LEFIK--GEVWANVWQVWPCIPYAYL 264 (276)
Q Consensus 241 LE~id--G~lyANvw~s~d~I~vIDp 264 (276)
+.+.. ..+|...... +...+.+.
T Consensus 182 i~~~~~~~~~~~~~~~~-~~~~v~~~ 206 (333)
T d1ri6a_ 182 MVFHPNEQYAYCVNELN-SSVDVWEL 206 (333)
T ss_dssp EEECTTSSEEEEEETTT-TEEEEEES
T ss_pred EEEeccceeEEeecccc-CceEEEee
Confidence 55543 3577666666 66555553
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.93 E-value=1.9e-08 Score=90.58 Aligned_cols=149 Identities=9% Similarity=-0.023 Sum_probs=106.6
Q ss_pred CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEE--EEecC-CCC
Q 023864 116 DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLE--EFTHQ-MKD 192 (276)
Q Consensus 116 g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~--~~~~~-~~E 192 (276)
+.++++.. ++..|++||++|++++.+++.+..+.+.-++.+|++||... .++.+.+||.+|.+... +++.. .++
T Consensus 32 ~~~~V~~~--~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~-~d~~v~vwd~~t~~~~~~~~i~~~~~~~ 108 (426)
T d1hzua2 32 NLFSVTLR--DAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIG-RDARIDMIDLWAKEPTKVAEIKIGIEAR 108 (426)
T ss_dssp GEEEEEET--TTTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEE-TTSEEEEEETTSSSCEEEEEEECCSEEE
T ss_pred eEEEEEEc--CCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEe-CCCCEEEEEccCCceeEEEEEeCCCCCc
Confidence 34566655 88999999999999999999888766444444678888776 47899999999988554 45543 245
Q ss_pred eeEEe----eCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeC---CEeeeeeeeeEE----ECC-EEEEEeCCCCCeE
Q 023864 193 GWGLA----TDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYK---GREVRNLNELEF----IKG-EVWANVWQVWPCI 259 (276)
Q Consensus 193 GWGLT----~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~---g~pv~~lNELE~----idG-~lyANvw~s~d~I 259 (276)
++.++ +||++|++++ ....+.++|.++++++..+..... ...+..-.+..+ .|+ ++|.++..+ +.|
T Consensus 109 ~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~-~~i 187 (426)
T d1hzua2 109 SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET-GKV 187 (426)
T ss_dssp EEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT-TEE
T ss_pred ceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCC-CeE
Confidence 66654 6999999988 688999999999999888776431 111111111111 133 688888888 899
Q ss_pred EEEeCCCCc
Q 023864 260 PYAYLQAFG 268 (276)
Q Consensus 260 ~vIDp~T~~ 268 (276)
..++..++.
T Consensus 188 ~~~~~~~~~ 196 (426)
T d1hzua2 188 LLVNYKDID 196 (426)
T ss_dssp EEEECSSSS
T ss_pred EEEEecccc
Confidence 888877654
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.92 E-value=1.8e-08 Score=89.41 Aligned_cols=159 Identities=13% Similarity=0.097 Sum_probs=103.2
Q ss_pred CceEEEEecCC-EEEEEcCCCCCCeEEEEeCCCCcEEEEe-ecCCCc--eEEEEEEeC-CEEEEEEee------------
Q 023864 106 FTQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAIN-QMEGSY--FGEGLTLLG-EKLFQVTWL------------ 168 (276)
Q Consensus 106 FTQGL~~~~dg-~LyeStG~yg~S~I~~iDl~tgkv~~~~-~l~~~~--FgEGit~~g-~~LyqlTwk------------ 168 (276)
+..||.|++|| +||.+.+ .+.|.++|++++...... ..+... +.-.++++. ++||+.+..
T Consensus 72 ~P~Gl~~~~dg~~l~vad~---~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~ 148 (314)
T d1pjxa_ 72 IPAGCQCDRDANQLFVADM---RLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSM 148 (314)
T ss_dssp CEEEEEECSSSSEEEEEET---TTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTT
T ss_pred cceeEEEeCCCCEEEEEEC---CCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCccccccccee
Confidence 35699999987 5777533 467999999876532211 122222 245677764 799987643
Q ss_pred ---CCEEEEEeCCCCcEEEEE-ecCCCCeeEEeeCCC----EEEEEC-CCceEEEEcCCC-CcEEE-EEEeeeCCEeeee
Q 023864 169 ---QKTGFIYDQNNLNKLEEF-THQMKDGWGLATDGK----VLFGSD-GSSMLYQIDPQT-LKVIR-KDIVRYKGREVRN 237 (276)
Q Consensus 169 ---~~~v~V~D~~tlk~i~~~-~~~~~EGWGLT~Dg~----~L~vSD-GS~~L~viDp~t-~~vi~-~I~V~~~g~pv~~ 237 (276)
.+.++.+|++. +..... ....+.|.++++|++ .||++| +..+|+.+|... ..+.. ++-....+.....
T Consensus 149 ~~~~G~v~~~~~dg-~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~ 227 (314)
T d1pjxa_ 149 QEKFGSIYCFTTDG-QMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGG 227 (314)
T ss_dssp SSSCEEEEEECTTS-CEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCE
T ss_pred ccCCceEEEEeecC-ceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccccccc
Confidence 35788888753 222211 222458999999876 799999 788999987543 33322 2222222322234
Q ss_pred eeeeEEE-CCEEEEEeCCCCCeEEEEeCCCCcE
Q 023864 238 LNELEFI-KGEVWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 238 lNELE~i-dG~lyANvw~s~d~I~vIDp~T~~v 269 (276)
+.-|.+. +|.||++.|.. +.|.+|||++++.
T Consensus 228 pdGiavD~~GnlyVa~~~~-g~I~~~dp~~g~~ 259 (314)
T d1pjxa_ 228 ADGMDFDEDNNLLVANWGS-SHIEVFGPDGGQP 259 (314)
T ss_dssp EEEEEEBTTCCEEEEEETT-TEEEEECTTCBSC
T ss_pred ceeeEEecCCcEEEEEcCC-CEEEEEeCCCCEE
Confidence 5556665 78999999999 9999999998653
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.88 E-value=2.6e-08 Score=85.01 Aligned_cols=153 Identities=10% Similarity=0.087 Sum_probs=106.6
Q ss_pred CCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEEEEEeeCCEEEEEeCCCCcEE
Q 023864 105 AFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNKL 183 (276)
Q Consensus 105 aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~LyqlTwk~~~v~V~D~~tlk~i 183 (276)
....|++++++|+||.+.. +...+++++..+++... .....-.+.|++++. ++||+.+..++.+.+++..+....
T Consensus 57 ~~p~gvav~~~g~i~v~d~--~~~~i~~~~~~~~~~~~--~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~ 132 (260)
T d1rwia_ 57 YQPQGLAVDGAGTVYVTDF--NNRVVTLAAGSNNQTVL--PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT 132 (260)
T ss_dssp CSCCCEEECTTCCEEEEET--TTEEEEECTTCSCCEEC--CCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCE
T ss_pred cCceEEEEcCCCCEEEeee--eeceeeeeeeccceeee--eeeeeeecccccccccceeEeeccccccccccccccceee
Confidence 3457999999999998643 66677766666665433 333333456888865 699999999999999998775542
Q ss_pred EEEe--cCCCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCCCCCeE
Q 023864 184 EEFT--HQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQVWPCI 259 (276)
Q Consensus 184 ~~~~--~~~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~s~d~I 259 (276)
.... ...+.|..+.++|+ +|++| +..+|..+|+++.... .+... ....++.|.+. +|.||+..|.. +.|
T Consensus 133 ~~~~~~~~~p~~i~~~~~g~-~~v~~~~~~~i~~~d~~~~~~~-~~~~~----~~~~p~gi~~d~~g~l~vsd~~~-~~i 205 (260)
T d1rwia_ 133 VLPFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQV-VLPFT----DITAPWGIAVDEAGTVYVTEHNT-NQV 205 (260)
T ss_dssp ECCCCSCCSCCEEEECTTCC-EEEEEGGGTEEEEECTTTCCEE-ECCCS----SCCSEEEEEECTTCCEEEEETTT-TEE
T ss_pred eeeecccCCcceeeecCCCC-Eeeeccccccccccccccceee-eeecc----ccCCCccceeeeeeeeeeeecCC-CEE
Confidence 2211 22346666777776 78877 6889999998865432 12112 12345667775 68999999999 999
Q ss_pred EEEeCCCCc
Q 023864 260 PYAYLQAFG 268 (276)
Q Consensus 260 ~vIDp~T~~ 268 (276)
.+|++....
T Consensus 206 ~~~~~~~~~ 214 (260)
T d1rwia_ 206 VKLLAGSTT 214 (260)
T ss_dssp EEECTTCSC
T ss_pred EEEeCCCCe
Confidence 999998754
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=3.4e-07 Score=79.69 Aligned_cols=156 Identities=12% Similarity=0.008 Sum_probs=111.3
Q ss_pred ceEEEEec-CCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeC-CEEEEEeCCCCcE
Q 023864 107 TQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQ-KTGFIYDQNNLNK 182 (276)
Q Consensus 107 TQGL~~~~-dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~-~~v~V~D~~tlk~ 182 (276)
.+||+++. .+.||.+.. +..+|.+.+++......... .....+.||+++ ++.||..+|.+ .++...+.+.-..
T Consensus 79 p~glAvD~~~~~lY~~d~--~~~~I~v~~~~g~~~~~~~~-~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~ 155 (266)
T d1ijqa1 79 PDGLAVDWIHSNIYWTDS--VLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 155 (266)
T ss_dssp CCEEEEETTTTEEEEEET--TTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE
T ss_pred cceEEEeeccceEEEEec--CCCEEEeEecCCceEEEEEc-CCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce
Confidence 46999985 478999765 88899999998765433333 222346688887 68999999876 4788888865544
Q ss_pred EEEEecC--CCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCCCCeE
Q 023864 183 LEEFTHQ--MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQVWPCI 259 (276)
Q Consensus 183 i~~~~~~--~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s~d~I 259 (276)
..-+... .+.|.++.+.+++||.+| +.++|..+|+...... .+.... ....++-.|.+.+++||...|.+ +.|
T Consensus 156 ~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~-~~~~~~--~~~~~p~~lav~~~~ly~td~~~-~~I 231 (266)
T d1ijqa1 156 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILEDE--KRLAHPFSLAVFEDKVFWTDIIN-EAI 231 (266)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEEECT--TTTSSEEEEEEETTEEEEEETTT-TEE
T ss_pred ecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEE-EEEeCC--CcccccEEEEEECCEEEEEECCC-CeE
Confidence 3333322 346666777799999999 6899999999765432 222222 11224455788899999999999 999
Q ss_pred EEEeCCCCcE
Q 023864 260 PYAYLQAFGS 269 (276)
Q Consensus 260 ~vIDp~T~~v 269 (276)
.++|..+|+.
T Consensus 232 ~~~~~~~g~~ 241 (266)
T d1ijqa1 232 FSANRLTGSD 241 (266)
T ss_dssp EEEETTTCCC
T ss_pred EEEECCCCcc
Confidence 9999999763
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.84 E-value=6.3e-07 Score=76.95 Aligned_cols=161 Identities=12% Similarity=0.083 Sum_probs=114.1
Q ss_pred EEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecC-CCceEEEEEEeC-CEEEEEEeeCCEEE
Q 023864 96 VNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLLG-EKLFQVTWLQKTGF 173 (276)
Q Consensus 96 v~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~-~~~FgEGit~~g-~~LyqlTwk~~~v~ 173 (276)
+.++.........|++++++|.+|.... +...+.++|.+ |+++.+...+ ......++++.. +.+|++.+..+.+.
T Consensus 105 ~~~~~~~~~~~p~~~avd~~G~i~v~~~--~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~ 181 (279)
T d1q7fa_ 105 VRKFGATILQHPRGVTVDNKGRIIVVEC--KVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVK 181 (279)
T ss_dssp EEEECTTTCSCEEEEEECTTSCEEEEET--TTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEE
T ss_pred eeecCCCcccccceeccccCCcEEEEee--ccceeeEeccC-CceeecccccccccccceeeeccceeEEeeecccccee
Confidence 3444433345557999999999998766 67789999875 6666665433 234677888875 69999999999999
Q ss_pred EEeCCCCcEEEEEecC----CCCeeEEeeCCCEEEEECC-Cc-eEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CC
Q 023864 174 IYDQNNLNKLEEFTHQ----MKDGWGLATDGKVLFGSDG-SS-MLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG 246 (276)
Q Consensus 174 V~D~~tlk~i~~~~~~----~~EGWGLT~Dg~~L~vSDG-S~-~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG 246 (276)
+||++ .+.+.+|..+ .|+|..+.++|+ +|++|. .+ +|.++|+ +++.++++....++. .+-.+.+. ||
T Consensus 182 ~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~-i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~---~p~~vav~~dG 255 (279)
T d1q7fa_ 182 VFNYE-GQYLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQ-DGQLISALESKVKHA---QCFDVALMDDG 255 (279)
T ss_dssp EEETT-CCEEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECT-TSCEEEEEEESSCCS---CEEEEEEETTT
T ss_pred eeecC-CceeeeecccccccCCcccccccCCe-EEEEECCCCcEEEEECC-CCCEEEEEeCCCCCC---CEeEEEEeCCC
Confidence 99975 4677777432 356666667776 889984 33 6998885 588888887754332 22334444 78
Q ss_pred EEEEEeCCCCCeEEEEeCCCC
Q 023864 247 EVWANVWQVWPCIPYAYLQAF 267 (276)
Q Consensus 247 ~lyANvw~s~d~I~vIDp~T~ 267 (276)
.||++.+ . ++|.+..-++.
T Consensus 256 ~l~V~~~-n-~~v~~fr~~~~ 274 (279)
T d1q7fa_ 256 SVVLASK-D-YRLYIYRYVQL 274 (279)
T ss_dssp EEEEEET-T-TEEEEEECSCC
T ss_pred cEEEEeC-C-CeEEEEEeeee
Confidence 9999885 6 78888776653
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=98.84 E-value=4.4e-08 Score=82.03 Aligned_cols=148 Identities=8% Similarity=-0.024 Sum_probs=106.8
Q ss_pred EEEEEcCCCCCCeEEEEeCCCC---cEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCC----cEEEEEecC
Q 023864 117 TLFESTGLYGRSSVRRVALETG---KVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNL----NKLEEFTHQ 189 (276)
Q Consensus 117 ~LyeStG~yg~S~I~~iDl~tg---kv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tl----k~i~~~~~~ 189 (276)
.+|+++. ++.+|++||+++. ++++..+.+..+.+-.++.+|+.||+....++.+.+||.++- +.......+
T Consensus 5 ~v~v~~~--~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~ 82 (333)
T d1ri6a_ 5 TVYIASP--ESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP 82 (333)
T ss_dssp EEEEEEG--GGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred EEEEECC--CCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccC
Confidence 4788776 8899999998653 455666778777766666677899999999999998876543 334444443
Q ss_pred -CCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE--CCEEEEEeCCCCCeEEEEeCC
Q 023864 190 -MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGEVWANVWQVWPCIPYAYLQ 265 (276)
Q Consensus 190 -~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i--dG~lyANvw~s~d~I~vIDp~ 265 (276)
.+.+..+++||++||+++ +...|.+++.++......+.....+..+ ..+.+. +.++++..... +.|.++|..
T Consensus 83 ~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~v~~s~d~~~~~~~~~~~-~~i~~~~~~ 158 (333)
T d1ri6a_ 83 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGC---HSANISPDNRTLWVPALKQ-DRICLFTVS 158 (333)
T ss_dssp SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTB---CCCEECTTSSEEEEEEGGG-TEEEEEEEC
T ss_pred CCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccc---eEEEeeecceeeecccccc-ceeeEEEec
Confidence 467778999999999988 6888999988887777666665433322 233343 33688888888 889998887
Q ss_pred CCcEE
Q 023864 266 AFGSS 270 (276)
Q Consensus 266 T~~v~ 270 (276)
+....
T Consensus 159 ~~~~~ 163 (333)
T d1ri6a_ 159 DDGHL 163 (333)
T ss_dssp TTSCE
T ss_pred cCCcc
Confidence 75543
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.80 E-value=5.7e-07 Score=78.33 Aligned_cols=152 Identities=11% Similarity=0.095 Sum_probs=106.9
Q ss_pred ceEEEEec-CCEEEEEcCCCCCCeEEEEeCCCCc--EEEEeecCCCceEEEEEEe--CCEEEEEEeeCC--EEEEEeCCC
Q 023864 107 TQGLLYAE-NDTLFESTGLYGRSSVRRVALETGK--VEAINQMEGSYFGEGLTLL--GEKLFQVTWLQK--TGFIYDQNN 179 (276)
Q Consensus 107 TQGL~~~~-dg~LyeStG~yg~S~I~~iDl~tgk--v~~~~~l~~~~FgEGit~~--g~~LyqlTwk~~--~v~V~D~~t 179 (276)
..||+++. .++||.+.. +...|.+.+++... ++....+ .-+-+|+++ ++.||...|..+ +++..+.+.
T Consensus 81 p~~iAvD~~~~~lY~~d~--~~~~I~~~~~dg~~~~~l~~~~l---~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG 155 (263)
T d1npea_ 81 PEGIALDHLGRTIFWTDS--QLDRIEVAKMDGTQRRVLFDTGL---VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG 155 (263)
T ss_dssp EEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEECSSC---SSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS
T ss_pred ccEEEEeccCCeEEEecc--CCCEEEEEecCCceEEEEecccc---cCCcEEEEecccCcEEEeecCCCCcEEEEecCCC
Confidence 46999984 478998755 78899999998654 2222122 235688886 689999998754 577788765
Q ss_pred CcEEEEEecC--CCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCCC
Q 023864 180 LNKLEEFTHQ--MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQVW 256 (276)
Q Consensus 180 lk~i~~~~~~--~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s~ 256 (276)
.....-.... .|.|.++.+.+++||.+| ++++|..+|.+.... +.+. ..-.+| -.|...+++||...|.+
T Consensus 156 ~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~-~~v~-~~~~~P----~~lav~~~~lYwtd~~~- 228 (263)
T d1npea_ 156 TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR-RKVL-EGLQYP----FAVTSYGKNLYYTDWKT- 228 (263)
T ss_dssp CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE-EEEE-ECCCSE----EEEEEETTEEEEEETTT-
T ss_pred CCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCe-EEEE-CCCCCc----EEEEEECCEEEEEECCC-
Confidence 4433323222 234445556689999999 799999999875443 3332 222234 45778899999999999
Q ss_pred CeEEEEeCCCCcEE
Q 023864 257 PCIPYAYLQAFGSS 270 (276)
Q Consensus 257 d~I~vIDp~T~~v~ 270 (276)
+.|.++|..+|+.+
T Consensus 229 ~~I~~~~~~~g~~~ 242 (263)
T d1npea_ 229 NSVIAMDLAISKEM 242 (263)
T ss_dssp TEEEEEETTTTEEE
T ss_pred CEEEEEECCCCccc
Confidence 99999999997754
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.76 E-value=1.8e-07 Score=84.04 Aligned_cols=169 Identities=11% Similarity=0.097 Sum_probs=102.1
Q ss_pred EEEEecCCCCCceEEEEecCCE-EEEEcCCCCCCeEEEEeCC-CCcEEEEe--e-cCCCceEEEEEEe--CCEEEEEEee
Q 023864 96 VNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALE-TGKVEAIN--Q-MEGSYFGEGLTLL--GEKLFQVTWL 168 (276)
Q Consensus 96 v~~~Phd~~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~-tgkv~~~~--~-l~~~~FgEGit~~--g~~LyqlTwk 168 (276)
+........+...|+.|+|||+ ||+.. .|.+.|.+|+.+ +|++.... . .+...-+.+++++ +..+|++++.
T Consensus 136 ~~~~~~q~~~h~h~v~~sPdG~~l~v~d--~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~ 213 (365)
T d1jofa_ 136 VQNYEYQENTGIHGMVFDPTETYLYSAD--LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA 213 (365)
T ss_dssp EEEEECCTTCCEEEEEECTTSSEEEEEE--TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETT
T ss_pred ccCcccCCCCcceEEEECCCCCEEEEee--CCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccC
Confidence 3333444556678999999986 77654 399999998754 45543322 1 2222224456664 5799999999
Q ss_pred CCEEEEEeCCCCcEE-----EEEecC------------C----CCeeEEeeCCCEEEEEC-CCce-----EEEEcC-CCC
Q 023864 169 QKTGFIYDQNNLNKL-----EEFTHQ------------M----KDGWGLATDGKVLFGSD-GSSM-----LYQIDP-QTL 220 (276)
Q Consensus 169 ~~~v~V~D~~tlk~i-----~~~~~~------------~----~EGWGLT~Dg~~L~vSD-GS~~-----L~viDp-~t~ 220 (276)
++++.+||.++.+.+ +++++- . +...-+++||++||+++ |.+. |..++. ++.
T Consensus 214 ~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g 293 (365)
T d1jofa_ 214 GNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCG 293 (365)
T ss_dssp TTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTS
T ss_pred CCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCC
Confidence 999999987655432 333321 0 12345889999999998 4443 554443 334
Q ss_pred cEEEEEEeeeCCEeeeeeeeeEEE--CC-EEEEEeCCCCCeEEEE--eCCCC
Q 023864 221 KVIRKDIVRYKGREVRNLNELEFI--KG-EVWANVWQVWPCIPYA--YLQAF 267 (276)
Q Consensus 221 ~vi~~I~V~~~g~pv~~lNELE~i--dG-~lyANvw~s~d~I~vI--Dp~T~ 267 (276)
.+.+...+..-...-.+++-+.+. +| +|||.+..+ |.|.+. |.+++
T Consensus 294 ~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s-~~v~v~~~~~~~l 344 (365)
T d1jofa_ 294 SIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQE-GWLEIYRWKDEFL 344 (365)
T ss_dssp CEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSS-CEEEEEEEETTEE
T ss_pred ceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCC-CeEEEEEEeCCcC
Confidence 444333322100000134445564 45 599999999 988875 55553
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.73 E-value=5.5e-07 Score=79.37 Aligned_cols=153 Identities=13% Similarity=0.119 Sum_probs=108.5
Q ss_pred CCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEe-ecCCCceEEEEEEe-CCEEEEEEee----CCEEEEE
Q 023864 102 DPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAIN-QMEGSYFGEGLTLL-GEKLFQVTWL----QKTGFIY 175 (276)
Q Consensus 102 d~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~-~l~~~~FgEGit~~-g~~LyqlTwk----~~~v~V~ 175 (276)
+...+++|++|+++|.||.+.- ...+|++||+++++..... ..+.. +.||++. +++||++... .+.++.+
T Consensus 37 ~~~~~lEG~~~D~~G~Ly~~D~--~~g~I~ri~p~g~~~~~~~~~~~~~--p~gla~~~dG~l~va~~~~~~~~~~i~~~ 112 (319)
T d2dg1a1 37 KKGLQLEGLNFDRQGQLFLLDV--FEGNIFKINPETKEIKRPFVSHKAN--PAAIKIHKDGRLFVCYLGDFKSTGGIFAA 112 (319)
T ss_dssp SSCCCEEEEEECTTSCEEEEET--TTCEEEEECTTTCCEEEEEECSSSS--EEEEEECTTSCEEEEECTTSSSCCEEEEE
T ss_pred cCCcCcEeCEECCCCCEEEEEC--CCCEEEEEECCCCeEEEEEeCCCCC--eeEEEECCCCCEEEEecCCCccceeEEEE
Confidence 4567789999999999998743 6679999999998765443 34444 4588886 4699998753 4678888
Q ss_pred eCCCCcEEEEEecC----CCCeeEEeeCCCEEEEECC-------CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE
Q 023864 176 DQNNLNKLEEFTHQ----MKDGWGLATDGKVLFGSDG-------SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI 244 (276)
Q Consensus 176 D~~tlk~i~~~~~~----~~EGWGLT~Dg~~L~vSDG-------S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i 244 (276)
|.++.+....+... .+.+..+++|| .||++|. ...++.+||+...+..-+ ..+..+|-|.+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~nd~~~d~~G-~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~------~~~~~pnGia~s 185 (319)
T d2dg1a1 113 TENGDNLQDIIEDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII------QNISVANGIALS 185 (319)
T ss_dssp CTTSCSCEEEECSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCEEEEE------EEESSEEEEEEC
T ss_pred cCCCceeeeeccCCCcccCCcceeEEecc-ceeecccccccccCcceeEEEecccceeEEEe------eccceeeeeeec
Confidence 88877765555321 12233456777 5899873 346999998865443221 134578888886
Q ss_pred -CC-EEEEEeCCCCCeEEEEeCCC
Q 023864 245 -KG-EVWANVWQVWPCIPYAYLQA 266 (276)
Q Consensus 245 -dG-~lyANvw~s~d~I~vIDp~T 266 (276)
|| .||++.... ++|.++|.+.
T Consensus 186 ~dg~~lyvad~~~-~~I~~~d~~~ 208 (319)
T d2dg1a1 186 TDEKVLWVTETTA-NRLHRIALED 208 (319)
T ss_dssp TTSSEEEEEEGGG-TEEEEEEECT
T ss_pred cccceEEEecccC-CceEEEEEcC
Confidence 45 699999999 9999998754
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.73 E-value=7.3e-08 Score=84.41 Aligned_cols=102 Identities=9% Similarity=-0.109 Sum_probs=84.4
Q ss_pred CCCeEEEEeCCCCcEEEEeecCCCceEEEEEE--eCCEEEEEEe---------eCCEEEEEeCCCCcEEEEEecC-----
Q 023864 126 GRSSVRRVALETGKVEAINQMEGSYFGEGLTL--LGEKLFQVTW---------LQKTGFIYDQNNLNKLEEFTHQ----- 189 (276)
Q Consensus 126 g~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~--~g~~LyqlTw---------k~~~v~V~D~~tlk~i~~~~~~----- 189 (276)
|...|..+|.++++++.++..+..+ ++++ ++..||+.++ +++.+.+||++|++++.+++.+
T Consensus 44 g~~~~~~~d~~~~~~~~~~~~~~~~---~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~ 120 (368)
T d1mdah_ 44 GTTENWVSCAGCGVTLGHSLGAFLS---LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRF 120 (368)
T ss_dssp SSEEEEEEETTTTEEEEEEEECTTC---EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSC
T ss_pred CcceEEEEeCCCCcEEEEEeCCCCC---cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCcccee
Confidence 5677999999999999988766432 4555 4578999997 3677999999999999998743
Q ss_pred ----CCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeee
Q 023864 190 ----MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRY 230 (276)
Q Consensus 190 ----~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~ 230 (276)
.+.+..+++||++||+++ ..+.+.++|+++.++++.+.+..
T Consensus 121 ~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~ 166 (368)
T d1mdah_ 121 SVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSAS 166 (368)
T ss_dssp CBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSS
T ss_pred cccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccC
Confidence 245778999999999998 57899999999999999998853
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.72 E-value=1.5e-07 Score=89.55 Aligned_cols=151 Identities=15% Similarity=0.098 Sum_probs=115.3
Q ss_pred CCCceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEE--eCCEEEEEEeeC-----------
Q 023864 104 RAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL--LGEKLFQVTWLQ----------- 169 (276)
Q Consensus 104 ~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~--~g~~LyqlTwk~----------- 169 (276)
-.||.| .+ ||+ ||.... ..++|.++|+++.|+.+.+.+|..-.--|+.. +++..|++.-.+
T Consensus 90 ~S~TdG-ty--DGrylFVNDk--an~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~ 164 (459)
T d1fwxa2 90 MSFTEG-KY--DGRFLFMNDK--ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTN 164 (459)
T ss_dssp EEEETT-EE--EEEEEEEEET--TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSS
T ss_pred ccccCC-cc--ceeEEEEEcC--CCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCcc
Confidence 567777 33 455 888655 89999999999999988777776555567666 578999988655
Q ss_pred --------CEEEEEeCCCCcEEEEEecC-CCCeeEEeeCCCEEEEECC-C------------------------------
Q 023864 170 --------KTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDG-S------------------------------ 209 (276)
Q Consensus 170 --------~~v~V~D~~tlk~i~~~~~~-~~EGWGLT~Dg~~L~vSDG-S------------------------------ 209 (276)
+.+.++|.++.++..++.++ ..++.+.++||+++|++.. +
T Consensus 165 l~d~~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~ 244 (459)
T d1fwxa2 165 MEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIA 244 (459)
T ss_dssp TTCGG-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHH
T ss_pred ccchhhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhh
Confidence 34578999999999999987 5689999999999999752 2
Q ss_pred -------ceEEEEcCCC---CcEEEEEEeeeCCEeeeeeeeeEEE-CC-EEEEEeCCCCCeEEEEeCCC
Q 023864 210 -------SMLYQIDPQT---LKVIRKDIVRYKGREVRNLNELEFI-KG-EVWANVWQVWPCIPYAYLQA 266 (276)
Q Consensus 210 -------~~L~viDp~t---~~vi~~I~V~~~g~pv~~lNELE~i-dG-~lyANvw~s~d~I~vIDp~T 266 (276)
+.+-++|..+ ..+++.|.|....+ .+... || ++|||.-.+ +.+.|||-+.
T Consensus 245 ~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPH------GV~vSPDGKyi~VaGKLs-~tVSViD~~K 306 (459)
T d1fwxa2 245 AGDYQELNGVKVVDGRKEASSLFTRYIPIANNPH------GCNMAPDKKHLCVAGKLS-PTVTVLDVTR 306 (459)
T ss_dssp HTCSEEETTEEEEECSGG--CSSEEEEEEESSCC------CEEECTTSSEEEEECTTS-SBEEEEEGGG
T ss_pred cCCcEEeCCceeecccccCCcceeEEEecCCCCC------ceEECCCCCEEEEeCCcC-CcEEEEEehh
Confidence 3456777664 45778888876322 22233 55 799999999 9999999863
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.70 E-value=8.2e-08 Score=80.11 Aligned_cols=106 Identities=13% Similarity=-0.001 Sum_probs=82.2
Q ss_pred CCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEecC-CCCeeEEeeCCCEEEE
Q 023864 127 RSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFG 205 (276)
Q Consensus 127 ~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~-~~EGWGLT~Dg~~L~v 205 (276)
...+..+|..+++.......+.....-++....+..+++....+.+.+||.++.+.+.+++.+ .+.+..+++||++||+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v 308 (346)
T d1jmxb_ 229 LYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYL 308 (346)
T ss_dssp EEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEE
T ss_pred CceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEE
Confidence 345778899998876665444433333455554445566677889999999999999999875 4567778999999999
Q ss_pred ECCCceEEEEcCCCCcEEEEEEeeeCC
Q 023864 206 SDGSSMLYQIDPQTLKVIRKDIVRYKG 232 (276)
Q Consensus 206 SDGS~~L~viDp~t~~vi~~I~V~~~g 232 (276)
++-.+.|.++|++|++.+++|.+..+.
T Consensus 309 ~~~d~~v~v~D~~t~~~i~~i~~p~g~ 335 (346)
T d1jmxb_ 309 GGTFNDLAVFNPDTLEKVKNIKLPGGD 335 (346)
T ss_dssp ESBSSEEEEEETTTTEEEEEEECSSSC
T ss_pred EeCCCcEEEEECccCCEEEEEECCCCC
Confidence 886789999999999999999997533
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.69 E-value=1.2e-07 Score=84.13 Aligned_cols=113 Identities=11% Similarity=0.197 Sum_probs=85.9
Q ss_pred CCCceEEEEecCC-----EEEEEcCCCCCCeEEEEeCCC-CcEEEEe---ecCC--CceEEEEEEe-CCEEEEEEeeCCE
Q 023864 104 RAFTQGLLYAEND-----TLFESTGLYGRSSVRRVALET-GKVEAIN---QMEG--SYFGEGLTLL-GEKLFQVTWLQKT 171 (276)
Q Consensus 104 ~aFTQGL~~~~dg-----~LyeStG~yg~S~I~~iDl~t-gkv~~~~---~l~~--~~FgEGit~~-g~~LyqlTwk~~~ 171 (276)
-.+..|+.|++++ +||.+.- ....|.+||+.. |.+..+. .++. .-.+.||+++ +++||+.+|.++.
T Consensus 171 ~~~pNGi~~~~d~d~~~~~lyv~d~--~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~ 248 (314)
T d1pjxa_ 171 FQFPNGIAVRHMNDGRPYQLIVAET--PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH 248 (314)
T ss_dssp ESSEEEEEEEECTTSCEEEEEEEET--TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred cceeeeeEECCCCCcceeEEEEEee--cccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCE
Confidence 3456799998864 5998744 788999998764 4443321 3332 2357899997 5799999999999
Q ss_pred EEEEeCCCCcEEEEEecC--CCCeeEEeeCCCEEEEEC-CCceEEEEcCC
Q 023864 172 GFIYDQNNLNKLEEFTHQ--MKDGWGLATDGKVLFGSD-GSSMLYQIDPQ 218 (276)
Q Consensus 172 v~V~D~~tlk~i~~~~~~--~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~ 218 (276)
+.+||+++.+.+.+++.+ .+-+..+.+|++.|||++ ++++|+.+|..
T Consensus 249 I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 249 IEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred EEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 999999999988888765 334566778999999998 67889988843
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.62 E-value=1.5e-06 Score=74.43 Aligned_cols=151 Identities=11% Similarity=0.125 Sum_probs=104.8
Q ss_pred CceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeec-----CCCceEEEEEEeC---CEEEEEEeeCCEEEEEeC
Q 023864 106 FTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM-----EGSYFGEGLTLLG---EKLFQVTWLQKTGFIYDQ 177 (276)
Q Consensus 106 FTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l-----~~~~FgEGit~~g---~~LyqlTwk~~~v~V~D~ 177 (276)
+..|+++++||+||++. ++...|+++|++ |+.+....- +....+.+++... +.++...+.++.+.++|.
T Consensus 24 ~P~gvavd~dg~i~VaD--~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 100 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVAD--TNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ 100 (279)
T ss_dssp CEEEEEECTTCCEEEEE--GGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT
T ss_pred CccEEEEcCCCCEEEEE--CCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc
Confidence 45799999999999974 488999999986 777666522 2345678888763 355555667778888886
Q ss_pred CCCcEEEEEecC-CCCeeEEe--eCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEe
Q 023864 178 NNLNKLEEFTHQ-MKDGWGLA--TDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANV 252 (276)
Q Consensus 178 ~tlk~i~~~~~~-~~EGWGLT--~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANv 252 (276)
+.+....+..+ ..+.++++ ++|. +|++| +..++.++|++ ++.+.++.... ....++-+.+. +|.||+..
T Consensus 101 -~g~~~~~~~~~~~~~p~~~avd~~G~-i~v~~~~~~~~~~~~~~-g~~~~~~g~~~---~~~~~~~i~~d~~g~i~v~d 174 (279)
T d1q7fa_ 101 -YGQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGCSK---HLEFPNGVVVNDKQEIFISD 174 (279)
T ss_dssp -TSCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEECTT---TCSSEEEEEECSSSEEEEEE
T ss_pred -cccceeecCCCcccccceeccccCCc-EEEEeeccceeeEeccC-Cceeecccccc---cccccceeeeccceeEEeee
Confidence 56677777533 33455554 5555 55555 78899999976 66766664432 22344444444 57899999
Q ss_pred CCCCCeEEEEeCCC
Q 023864 253 WQVWPCIPYAYLQA 266 (276)
Q Consensus 253 w~s~d~I~vIDp~T 266 (276)
+.. +.|.+.|+..
T Consensus 175 ~~~-~~V~~~d~~G 187 (279)
T d1q7fa_ 175 NRA-HCVKVFNYEG 187 (279)
T ss_dssp GGG-TEEEEEETTC
T ss_pred ccc-cceeeeecCC
Confidence 999 9999999864
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.59 E-value=1.6e-06 Score=75.91 Aligned_cols=158 Identities=13% Similarity=0.117 Sum_probs=102.2
Q ss_pred CceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC---CceEEEEEEe-CCEEEEEEeeC----CEEEEEeC
Q 023864 106 FTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG---SYFGEGLTLL-GEKLFQVTWLQ----KTGFIYDQ 177 (276)
Q Consensus 106 FTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~---~~FgEGit~~-g~~LyqlTwk~----~~v~V~D~ 177 (276)
..-++.+.+||.|+.++. +.|.++|+++|++..-..++. ....-.++++ ++++|..+... +...+|..
T Consensus 60 ~~~~i~~~~dg~l~va~~----~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~ 135 (295)
T d2ghsa1 60 MGSALAKISDSKQLIASD----DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV 135 (295)
T ss_dssp CEEEEEEEETTEEEEEET----TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred CcEEEEEecCCCEEEEEe----CccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeee
Confidence 345888888999998753 579999999999765544432 2223344454 68999998753 34455544
Q ss_pred CCCcEEEEEe-cCCCCeeEEeeCCCEEEEEC-CCceEEEEcC--CCCcEE--EEEEee---eCCEeeeeeeeeEEE-CCE
Q 023864 178 NNLNKLEEFT-HQMKDGWGLATDGKVLFGSD-GSSMLYQIDP--QTLKVI--RKDIVR---YKGREVRNLNELEFI-KGE 247 (276)
Q Consensus 178 ~tlk~i~~~~-~~~~EGWGLT~Dg~~L~vSD-GS~~L~viDp--~t~~vi--~~I~V~---~~g~pv~~lNELE~i-dG~ 247 (276)
.+.+....+. +..+.|.++++|++.||++| ++.+|+.+|. +..... +.+-+. ..|.| .-|..+ +|.
T Consensus 136 ~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~p----dG~~vD~~Gn 211 (295)
T d2ghsa1 136 AKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGM----DGSVCDAEGH 211 (295)
T ss_dssp ETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEE----EEEEECTTSC
T ss_pred cCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccc----cceEEcCCCC
Confidence 4443332222 22458889999999999999 6899988764 333222 122222 23333 223443 688
Q ss_pred EEEEeCCCCCeEEEEeCCCCcEEEEEE
Q 023864 248 VWANVWQVWPCIPYAYLQAFGSSLVYV 274 (276)
Q Consensus 248 lyANvw~s~d~I~vIDp~T~~v~l~~~ 274 (276)
||++.|.. .+|.++||+. +.+ ..|
T Consensus 212 lWva~~~~-g~V~~~dp~G-~~~-~~i 235 (295)
T d2ghsa1 212 IWNARWGE-GAVDRYDTDG-NHI-ARY 235 (295)
T ss_dssp EEEEEETT-TEEEEECTTC-CEE-EEE
T ss_pred EEeeeeCC-CceEEecCCC-cEe-eEe
Confidence 99999999 9999999964 543 443
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.51 E-value=4.3e-06 Score=72.55 Aligned_cols=120 Identities=12% Similarity=0.108 Sum_probs=89.6
Q ss_pred CCceEEEEecC-CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeCCEEEEEeCCCCc
Q 023864 105 AFTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLN 181 (276)
Q Consensus 105 aFTQGL~~~~d-g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~~~v~V~D~~tlk 181 (276)
....||+++|. |.||.+....+...|.+.+++..... .+..+.-..+.||+++ +++||.++...+++..+|.+...
T Consensus 122 ~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~-~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~ 200 (263)
T d1npea_ 122 VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR-ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG 200 (263)
T ss_dssp SSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE-EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE
T ss_pred cCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCce-eeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCC
Confidence 34579999975 78998765334456999998754322 2222333456789987 78999999999999999998655
Q ss_pred EEEEEecCCCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEE
Q 023864 182 KLEEFTHQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKD 226 (276)
Q Consensus 182 ~i~~~~~~~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I 226 (276)
...-+. +.++++||+-++++||++| ++++|+.+|..+.+.++.+
T Consensus 201 ~~~v~~-~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~g~~~~~~ 245 (263)
T d1npea_ 201 RRKVLE-GLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTF 245 (263)
T ss_dssp EEEEEE-CCCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eEEEEC-CCCCcEEEEEECCEEEEEECCCCEEEEEECCCCccceEE
Confidence 433333 3357889999999999999 8999999999999876444
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=2.5e-05 Score=66.66 Aligned_cols=167 Identities=11% Similarity=-0.012 Sum_probs=114.6
Q ss_pred eEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe-CCEEEEEEeeCCE
Q 023864 93 IQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQKT 171 (276)
Q Consensus 93 ~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~-g~~LyqlTwk~~~ 171 (276)
.++..+++. ...-...+.+++++.++.+++ .+..|..+|+.+++......-... ....+++. ++......-.++.
T Consensus 131 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~--~d~~i~~~~~~~~~~~~~~~~~~~-~v~~l~~s~~~~~~~~~~~d~~ 206 (337)
T d1gxra_ 131 PRIKAELTS-SAPACYALAISPDSKVCFSCC--SDGNIAVWDLHNQTLVRQFQGHTD-GASCIDISNDGTKLWTGGLDNT 206 (337)
T ss_dssp -EEEEEEEC-SSSCEEEEEECTTSSEEEEEE--TTSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSE
T ss_pred ccccccccc-ccccccccccccccccccccc--cccccccccccccccccccccccc-cccccccccccccccccccccc
Confidence 345555553 234446888999888777666 677899999999988766543222 23456654 3455555667899
Q ss_pred EEEEeCCCCcEEEEEecC-CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEE
Q 023864 172 GFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVW 249 (276)
Q Consensus 172 v~V~D~~tlk~i~~~~~~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~ly 249 (276)
+.+||..+.+.+.++.+. .-....++++++.|++...+..|.++|..+.+.... ..... .++-+.+. +|..+
T Consensus 207 v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~---~~~~~---~i~~v~~s~~g~~l 280 (337)
T d1gxra_ 207 VRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL---HLHES---CVLSLKFAYCGKWF 280 (337)
T ss_dssp EEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE---CCCSS---CEEEEEECTTSSEE
T ss_pred ccccccccceeecccccccceEEEEEcccccccceeccccccccccccccccccc---ccccc---ccceEEECCCCCEE
Confidence 999999999999998865 113344678899998877788999999998876432 11112 34555665 56555
Q ss_pred EEeCCCCCeEEEEeCCCCcEE
Q 023864 250 ANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 250 ANvw~s~d~I~vIDp~T~~v~ 270 (276)
|..-.+ +.|.+-|..+++.+
T Consensus 281 ~s~s~D-g~i~iwd~~~~~~~ 300 (337)
T d1gxra_ 281 VSTGKD-NLLNAWRTPYGASI 300 (337)
T ss_dssp EEEETT-SEEEEEETTTCCEE
T ss_pred EEEeCC-CeEEEEECCCCCEE
Confidence 555556 78888899987765
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.40 E-value=1.3e-05 Score=68.93 Aligned_cols=155 Identities=14% Similarity=0.054 Sum_probs=106.4
Q ss_pred CCCceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEEEEEeeCCEEEEEeCCCCc
Q 023864 104 RAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLN 181 (276)
Q Consensus 104 ~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~LyqlTwk~~~v~V~D~~tlk 181 (276)
......+.|+|++. ++.+++ .+..|+.||.++++......-...+ -..+.+.. ++++...-.++.+.+||..+.+
T Consensus 146 ~~~v~~v~~~~~~~~~l~sgs--~d~~i~i~d~~~~~~~~~~~~~~~~-i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~ 222 (311)
T d1nr0a1 146 ARAMNSVDFKPSRPFRIISGS--DDNTVAIFEGPPFKFKSTFGEHTKF-VHSVRYNPDGSLFASTGGDGTIVLYNGVDGT 222 (311)
T ss_dssp SSCEEEEEECSSSSCEEEEEE--TTSCEEEEETTTBEEEEEECCCSSC-EEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred ccccccccccccceeeecccc--ccccccccccccccccccccccccc-ccccccCcccccccccccccccccccccccc
Confidence 34568899999876 565554 5677999999999887766543332 24566653 4555555678999999999999
Q ss_pred EEEEEecCC--C---C----eeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEe
Q 023864 182 KLEEFTHQM--K---D----GWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANV 252 (276)
Q Consensus 182 ~i~~~~~~~--~---E----GWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANv 252 (276)
.+.+++... . + ...+++||+.|+....+..|.++|.++++.++++...... .. ..--+.+.+..|++.-
T Consensus 223 ~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~-~~-~~~~~~~~~~~l~s~s 300 (311)
T d1nr0a1 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI-ED-QQLGIIWTKQALVSIS 300 (311)
T ss_dssp EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSG-GG-CEEEEEECSSCEEEEE
T ss_pred ccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCc-cc-eEEEEEecCCEEEEEE
Confidence 988886431 0 1 2346689999888666678999999999999988775311 11 1112335556666443
Q ss_pred CCCCCeEEEEeCC
Q 023864 253 WQVWPCIPYAYLQ 265 (276)
Q Consensus 253 w~s~d~I~vIDp~ 265 (276)
.+ ..|.+.||+
T Consensus 301 -~d-G~i~~wd~d 311 (311)
T d1nr0a1 301 -AN-GFINFVNPE 311 (311)
T ss_dssp -TT-CCEEEEETT
T ss_pred -CC-CEEEEEeCC
Confidence 56 889999985
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.37 E-value=2.3e-06 Score=76.65 Aligned_cols=170 Identities=10% Similarity=0.008 Sum_probs=98.4
Q ss_pred eeEEEEEEecCCCCCceEEEEecCC-EEEEEcCCCCCCeEEEEeCCCCcEEE-EeecCCCceEEEEEEeCCEEEEEEee-
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEA-INQMEGSYFGEGLTLLGEKLFQVTWL- 168 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg-~LyeStG~yg~S~I~~iDl~tgkv~~-~~~l~~~~FgEGit~~g~~LyqlTwk- 168 (276)
+.++++........-.++|+|++|+ .||.+++ +.-....+|.+++.+.. ..+++..+....+...++.+|+++..
T Consensus 27 ~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~ 104 (365)
T d1jofa_ 27 TCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM--KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQ 104 (365)
T ss_dssp EEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB--TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSS
T ss_pred eEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC--CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecC
Confidence 3456655433223334579999986 4887755 55555566666554322 23555554433334445677777653
Q ss_pred -CCEEEEEeCC-------------CCcEEEEE---ecC---CCCeeEEeeCCCEEEEEC-CCceEEEEcC-CCCcE--EE
Q 023864 169 -QKTGFIYDQN-------------NLNKLEEF---THQ---MKDGWGLATDGKVLFGSD-GSSMLYQIDP-QTLKV--IR 224 (276)
Q Consensus 169 -~~~v~V~D~~-------------tlk~i~~~---~~~---~~EGWGLT~Dg~~L~vSD-GS~~L~viDp-~t~~v--i~ 224 (276)
++.++++... +.+.-+.. ..+ .+.+..++|||++||+.| |.++|++++- .+.+. ..
T Consensus 105 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~ 184 (365)
T d1jofa_ 105 PPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVG 184 (365)
T ss_dssp TTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEE
T ss_pred CCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeecc
Confidence 3444443321 11221222 122 234667899999999988 8999988853 33433 33
Q ss_pred EEEeeeCC-EeeeeeeeeEEE-CC-EEEEEeCCCCCeEEEEeCCCCc
Q 023864 225 KDIVRYKG-REVRNLNELEFI-KG-EVWANVWQVWPCIPYAYLQAFG 268 (276)
Q Consensus 225 ~I~V~~~g-~pv~~lNELE~i-dG-~lyANvw~s~d~I~vIDp~T~~ 268 (276)
.+.....| .|. -+.+. || ++|+.+..+ +.|.++|.++++
T Consensus 185 ~~~~~~~g~gPr----~i~f~pdg~~~yv~~e~~-~~V~v~~~~~~~ 226 (365)
T d1jofa_ 185 SVDAPDPGDHPR----WVAMHPTGNYLYALMEAG-NRICEYVIDPAT 226 (365)
T ss_dssp EEECSSTTCCEE----EEEECTTSSEEEEEETTT-TEEEEEEECTTT
T ss_pred ceeecCCCCceE----EEEECCCCceEEEeccCC-CEEEEEEecCCC
Confidence 34443322 332 34454 44 699999999 999999887654
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.34 E-value=9.7e-06 Score=67.68 Aligned_cols=122 Identities=13% Similarity=0.052 Sum_probs=86.5
Q ss_pred EEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeC
Q 023864 98 EFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQ 177 (276)
Q Consensus 98 ~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~ 177 (276)
.++|.. -.+.+.|+|||+.+.++|..+...|.+||.++|++.+...-....++..+..+ ++.......++.+.++|.
T Consensus 38 ~~~~~~--~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spd-g~~l~~~~~~~~~~~~~~ 114 (360)
T d1k32a3 38 KVPEPL--RIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRN-GKFAVVANDRFEIMTVDL 114 (360)
T ss_dssp ECSCCS--CEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTT-SSEEEEEETTSEEEEEET
T ss_pred EccCCC--CEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEEeeeeccc-ccccceeccccccccccc
Confidence 357743 35799999999755555544556899999999998766555555554433333 455556678889999999
Q ss_pred CCCcEEEEEecC--CCCeeEEeeCCCEEEEEC--------C--CceEEEEcCCCCcE
Q 023864 178 NNLNKLEEFTHQ--MKDGWGLATDGKVLFGSD--------G--SSMLYQIDPQTLKV 222 (276)
Q Consensus 178 ~tlk~i~~~~~~--~~EGWGLT~Dg~~L~vSD--------G--S~~L~viDp~t~~v 222 (276)
++.+....+... ......+++||++|..+. + ...++++|.++.+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~ 171 (360)
T d1k32a3 115 ETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI 171 (360)
T ss_dssp TTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE
T ss_pred cccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCce
Confidence 999988887643 235566889999987642 1 33688899988754
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.32 E-value=0.00015 Score=61.44 Aligned_cols=168 Identities=10% Similarity=0.046 Sum_probs=111.2
Q ss_pred eeeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCC-----------------ceE
Q 023864 90 IYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGS-----------------YFG 152 (276)
Q Consensus 90 ~~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~-----------------~Fg 152 (276)
.....+++.+.|. .-+.-+.|++||+++. +| ++..|+.||+.+++.+.+...... ..-
T Consensus 50 ~~~~~l~~~~~H~--~~V~~l~fs~dg~~la-sg--~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 124 (388)
T d1erja_ 50 EIDVELHKSLDHT--SVVCCVKFSNDGEYLA-TG--CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYI 124 (388)
T ss_dssp CEEEEEEEEEECS--SCCCEEEECTTSSEEE-EE--CBSCEEEEETTTCCEEEEECC-----------------CCCCBE
T ss_pred ceeeeeEeeCCCC--CcEEEEEECCCCCEEE-EE--eCCeEEEEEecccceEeeecccccccccccccccccccCCCCCE
Confidence 4566778888884 3456999999998775 45 356899999999998776532211 112
Q ss_pred EEEEEe-CCEEEEEEeeCCEEEEEeCCCCcEEEEEecCCCCee--EEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEee
Q 023864 153 EGLTLL-GEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGW--GLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVR 229 (276)
Q Consensus 153 EGit~~-g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~EGW--GLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~ 229 (276)
..+++. ++++.+..-.++.+.++|..+.+.+..+.....+=+ ...+++..++.+.....+.++|..+...+......
T Consensus 125 ~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 204 (388)
T d1erja_ 125 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE 204 (388)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred EEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccc
Confidence 245554 345555566789999999999999888763212223 35578888888888899999999998877665544
Q ss_pred eCCEeeeeeeeeEEE--CCEEEEEeCCCCCeEEEEeCCCCcE
Q 023864 230 YKGREVRNLNELEFI--KGEVWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 230 ~~g~pv~~lNELE~i--dG~lyANvw~s~d~I~vIDp~T~~v 269 (276)
.... .+.+. +|.+.|..-.+ ..|.+.|.+++..
T Consensus 205 ~~~~------~~~~~~~~~~~l~~~~~d-~~i~i~~~~~~~~ 239 (388)
T d1erja_ 205 DGVT------TVAVSPGDGKYIAAGSLD-RAVRVWDSETGFL 239 (388)
T ss_dssp SCEE------EEEECSTTCCEEEEEETT-SCEEEEETTTCCE
T ss_pred cccc------cccccCCCCCeEEEEcCC-CeEEEeecccCcc
Confidence 3111 11121 45544444445 6788888877553
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.30 E-value=4.7e-06 Score=69.69 Aligned_cols=113 Identities=12% Similarity=-0.041 Sum_probs=81.1
Q ss_pred EEec-CCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEE--eCCEEEEEEeeC-CEEEEEeCCCCcEEEEE
Q 023864 111 LYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL--LGEKLFQVTWLQ-KTGFIYDQNNLNKLEEF 186 (276)
Q Consensus 111 ~~~~-dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~--~g~~LyqlTwk~-~~v~V~D~~tlk~i~~~ 186 (276)
-|+| ||+++..++ ...|.+||.+++++++. .-+.+.. .+++ ++++|+.....+ +.++++|.++.+.....
T Consensus 9 ~fSP~dG~~~a~~~---~g~v~v~d~~~~~~~~~-~~~~~v~--~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~ 82 (360)
T d1k32a3 9 DFSPLDGDLIAFVS---RGQAFIQDVSGTYVLKV-PEPLRIR--YVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFE 82 (360)
T ss_dssp EEEECGGGCEEEEE---TTEEEEECTTSSBEEEC-SCCSCEE--EEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECC
T ss_pred cccCCCCCEEEEEE---CCeEEEEECCCCcEEEc-cCCCCEE--EEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEee
Confidence 4798 898776443 35899999999987653 3234443 4555 455666665554 47899999998776544
Q ss_pred ecC-CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEee
Q 023864 187 THQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVR 229 (276)
Q Consensus 187 ~~~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~ 229 (276)
... .-....+++||+.|....+...++++|.++.+....+...
T Consensus 83 ~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (360)
T d1k32a3 83 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR 126 (360)
T ss_dssp CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred CCCceEEeeeecccccccceeccccccccccccccceeeeeecc
Confidence 433 1245568899999999888999999999999987766554
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.29 E-value=1.9e-05 Score=63.42 Aligned_cols=158 Identities=9% Similarity=0.053 Sum_probs=110.9
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEEEEEeeCCEEEEEeCCCCcE
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNK 182 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~LyqlTwk~~~v~V~D~~tlk~ 182 (276)
..-+..|.|+|++.++.|++ .+..|+.||+++++.+......... -..++... +.+......++.+..+|....+.
T Consensus 17 ~~~I~~l~~sp~~~~l~s~s--~Dg~i~iWd~~~~~~~~~~~~h~~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (317)
T d1vyhc1 17 RSPVTRVIFHPVFSVMVSAS--EDATIKVWDYETGDFERTLKGHTDS-VQDISFDHSGKLLASCSADMTIKLWDFQGFEC 93 (317)
T ss_dssp SSCEEEEEECSSSSEEEEEE--SSSCEEEEETTTCCCCEEECCCSSC-EEEEEECTTSSEEEEEETTSCCCEEETTSSCE
T ss_pred CCCeEEEEEcCCCCEEEEEe--CCCeEEEEECCCCCEEEEEeCCCCc-EEEEeeeccccccccccccccccccccccccc
Confidence 33467999999998888777 6789999999999988876544332 24566653 56666777788888899888887
Q ss_pred EEEEecC--CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCCCCCeE
Q 023864 183 LEEFTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQVWPCI 259 (276)
Q Consensus 183 i~~~~~~--~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~s~d~I 259 (276)
...+... ........++++.++.......+.++|.++.+.+..+..... ..+.+.+. +|.++|..-.. ..|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~d-~~v 167 (317)
T d1vyhc1 94 IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE-----WVRMVRPNQDGTLIASCSND-QTV 167 (317)
T ss_dssp EECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS-----CEEEEEECTTSSEEEEEETT-SCE
T ss_pred ccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCC-----cceeeecccCCCEEEEEeCC-CeE
Confidence 6665422 112334677899988877888999999999988877754321 22333444 45566665566 788
Q ss_pred EEEeCCCCcEE
Q 023864 260 PYAYLQAFGSS 270 (276)
Q Consensus 260 ~vIDp~T~~v~ 270 (276)
.+.|..+++..
T Consensus 168 ~~~~~~~~~~~ 178 (317)
T d1vyhc1 168 RVWVVATKECK 178 (317)
T ss_dssp EEEETTTCCEE
T ss_pred EEEeeccceee
Confidence 88888886543
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=0.00012 Score=59.48 Aligned_cols=152 Identities=14% Similarity=0.006 Sum_probs=103.4
Q ss_pred EEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEecC
Q 023864 110 LLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ 189 (276)
Q Consensus 110 L~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~ 189 (276)
..+..++..+.+++ .+..|+.||+++++.+....-. ...-..+...++.|+.. -.++.+.+||..+.+....+...
T Consensus 181 ~~~~~~~~~l~s~~--~dg~i~~~d~~~~~~~~~~~~~-~~~v~~~~~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~~ 256 (342)
T d2ovrb2 181 YSLQFDGIHVVSGS--LDTSIRVWDVETGNCIHTLTGH-QSLTSGMELKDNILVSG-NADSTVKIWDIKTGQCLQTLQGP 256 (342)
T ss_dssp EEEEECSSEEEEEE--TTSCEEEEETTTCCEEEEECCC-CSCEEEEEEETTEEEEE-ETTSCEEEEETTTCCEEEEECST
T ss_pred ccccCCCCEEEEEe--CCCeEEEeecccceeeeEeccc-ccceeEEecCCCEEEEE-cCCCEEEEEeccccccccccccc
Confidence 34445566555555 6678999999999987765543 33445777778765554 46789999999999998888632
Q ss_pred ---CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCCCC----eEEEE
Q 023864 190 ---MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQVWP----CIPYA 262 (276)
Q Consensus 190 ---~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s~d----~I~vI 262 (276)
...-..++.+++.++....+..|.++|.++++.++++.....+..-..++-+.+.+...++.....+. .|.+.
T Consensus 257 ~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~ 336 (342)
T d2ovrb2 257 NKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336 (342)
T ss_dssp TSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEE
T ss_pred ceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEE
Confidence 12334577888888776667899999999999999987654322222355566766655555544412 46666
Q ss_pred eCC
Q 023864 263 YLQ 265 (276)
Q Consensus 263 Dp~ 265 (276)
|-.
T Consensus 337 Df~ 339 (342)
T d2ovrb2 337 DFD 339 (342)
T ss_dssp ECC
T ss_pred eCC
Confidence 654
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=7.8e-05 Score=63.43 Aligned_cols=157 Identities=11% Similarity=0.072 Sum_probs=107.5
Q ss_pred CCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCc--EEEEeecCCCceEEEEEEeC-CEEEEEEeeCCEEEEEeCCC
Q 023864 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGK--VEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNN 179 (276)
Q Consensus 103 ~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgk--v~~~~~l~~~~FgEGit~~g-~~LyqlTwk~~~v~V~D~~t 179 (276)
....+..+.|++||.++.+++ .+..|+.||+...+ ......-. ..-...+++.. +.+......++.+.++|..+
T Consensus 96 h~~~I~~v~~s~dg~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~ 172 (337)
T d1gxra_ 96 RDNYIRSCKLLPDGCTLIVGG--EASTLSIWDLAAPTPRIKAELTSS-APACYALAISPDSKVCFSCCSDGNIAVWDLHN 172 (337)
T ss_dssp TTSBEEEEEECTTSSEEEEEE--SSSEEEEEECCCC--EEEEEEECS-SSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CCCcEEEEEEcCCCCEEEEee--cccccccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 356778999999988777666 57789999988654 33333222 22233455553 45666677889999999999
Q ss_pred CcEEEEEecCCCCeeE--EeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCCCC
Q 023864 180 LNKLEEFTHQMKDGWG--LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQVW 256 (276)
Q Consensus 180 lk~i~~~~~~~~EGWG--LT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~s~ 256 (276)
.+....+......-+. ++++++.++.......|.++|.++++.++...... .++.+.+. ++...+..-.+
T Consensus 173 ~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~------~i~~l~~~~~~~~l~~~~~d- 245 (337)
T d1gxra_ 173 QTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTS------QIFSLGYCPTGEWLAVGMES- 245 (337)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS------CEEEEEECTTSSEEEEEETT-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccceeeccccccc------ceEEEEEcccccccceeccc-
Confidence 9988777643233444 45789999888778899999999999887766543 34555665 44433333345
Q ss_pred CeEEEEeCCCCcE
Q 023864 257 PCIPYAYLQAFGS 269 (276)
Q Consensus 257 d~I~vIDp~T~~v 269 (276)
..|.+.|..+++.
T Consensus 246 ~~i~i~d~~~~~~ 258 (337)
T d1gxra_ 246 SNVEVLHVNKPDK 258 (337)
T ss_dssp SCEEEEETTSSCE
T ss_pred ccccccccccccc
Confidence 7888888887664
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=7.9e-05 Score=64.23 Aligned_cols=155 Identities=9% Similarity=0.034 Sum_probs=104.5
Q ss_pred CceEEEEecC-CEEEEEcCCCCCCeEEEEeCCCCcE---EEEeecCCCceEEEEEEe--CCEEEEEEeeCCEEEEEeCCC
Q 023864 106 FTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKV---EAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNN 179 (276)
Q Consensus 106 FTQGL~~~~d-g~LyeStG~yg~S~I~~iDl~tgkv---~~~~~l~~~~FgEGit~~--g~~LyqlTwk~~~v~V~D~~t 179 (276)
-..||.|+.. ++||.+.. +...|.+.+++.... ...+-...-.-.+||+++ ++.||..+...+++.+++.+.
T Consensus 31 ~~~~id~d~~~~~lYw~D~--~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g 108 (266)
T d1ijqa1 31 NVVALDTEVASNRIYWSDL--SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (266)
T ss_dssp SEEEEEEETTTTEEEEEET--TTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred ceEEEEEEeCCCEEEEEEC--CCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCC
Confidence 3458999864 68999855 678899888764221 111111222234578886 899999999999999999987
Q ss_pred CcEEEEEecC--CCCeeEEeeCCCEEEEEC-C-CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE--CCEEEEEeC
Q 023864 180 LNKLEEFTHQ--MKDGWGLATDGKVLFGSD-G-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGEVWANVW 253 (276)
Q Consensus 180 lk~i~~~~~~--~~EGWGLT~Dg~~L~vSD-G-S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i--dG~lyANvw 253 (276)
......+... .|.|..+.+....||.+| | ..+|+..+...-... .+ +.. .+..+|.|.+. +++||....
T Consensus 109 ~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~-~l-~~~---~~~~p~gl~iD~~~~~lYw~d~ 183 (266)
T d1ijqa1 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SL-VTE---NIQWPNGITLDLLSGRLYWVDS 183 (266)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE-EE-ECS---SCSCEEEEEEETTTTEEEEEET
T ss_pred ceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCcee-cc-ccc---ccceeeEEEeeccccEEEEecC
Confidence 7655545433 345555667788999998 4 347888887654332 22 221 13456777776 678999998
Q ss_pred CCCCeEEEEeCCCCc
Q 023864 254 QVWPCIPYAYLQAFG 268 (276)
Q Consensus 254 ~s~d~I~vIDp~T~~ 268 (276)
.. +.|.++|+....
T Consensus 184 ~~-~~I~~~~~dG~~ 197 (266)
T d1ijqa1 184 KL-HSISSIDVNGGN 197 (266)
T ss_dssp TT-TEEEEEETTSCS
T ss_pred Cc-CEEEEEECCCCC
Confidence 99 999999997643
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.23 E-value=1.5e-05 Score=75.64 Aligned_cols=165 Identities=10% Similarity=0.019 Sum_probs=116.4
Q ss_pred EEEEEEecCCCCCceEEEEecCC-EEEEEcC-CC----------------CCCeEEEEeCCCCcEEEEeecCCCceEEEE
Q 023864 94 QVVNEFPHDPRAFTQGLLYAEND-TLFESTG-LY----------------GRSSVRRVALETGKVEAINQMEGSYFGEGL 155 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg-~LyeStG-~y----------------g~S~I~~iDl~tgkv~~~~~l~~~~FgEGi 155 (276)
++.+.+...-.+..+|+....++ +.|+.++ .| ..+.+..+|.+++++..++.++..+-..+.
T Consensus 121 kt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~ 200 (459)
T d1fwxa2 121 KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDA 200 (459)
T ss_dssp EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEESSCCCCEEE
T ss_pred eeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecCCceEEEEeeeCCChhcccc
Confidence 66553333335666999886653 4666553 11 114578999999999999999988777777
Q ss_pred EEeCCEEEEEEeeC-------------------------------------CEEEEEeCC---CCcEEEEEecC-CCCee
Q 023864 156 TLLGEKLFQVTWLQ-------------------------------------KTGFIYDQN---NLNKLEEFTHQ-MKDGW 194 (276)
Q Consensus 156 t~~g~~LyqlTwk~-------------------------------------~~v~V~D~~---tlk~i~~~~~~-~~EGW 194 (276)
..+|+.+|...+.+ +.+-|+|.. ..+.++.+|.+ .|.|.
T Consensus 201 s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV 280 (459)
T d1fwxa2 201 DYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGC 280 (459)
T ss_dssp CSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCE
T ss_pred CCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCce
Confidence 77888888876543 344678865 44577888887 67888
Q ss_pred EEeeCCCEEEEEC-CCceEEEEcCCCCcE------------EEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCCCCCeEE
Q 023864 195 GLATDGKVLFGSD-GSSMLYQIDPQTLKV------------IRKDIVRYKGREVRNLNELEFI-KGEVWANVWQVWPCIP 260 (276)
Q Consensus 195 GLT~Dg~~L~vSD-GS~~L~viDp~t~~v------------i~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~s~d~I~ 260 (276)
.++|||+++|+++ .++.|+|+|-+.+.. ..+.+++. .|.+. +|. +|..|...+-+ ..|+
T Consensus 281 ~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elgl--gPLht----~fd~~g~aytslfid-s~v~ 353 (459)
T d1fwxa2 281 NMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL--GPLHT----AFDGRGNAYTSLFLD-SQVV 353 (459)
T ss_dssp EECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCS--CEEEE----EECTTSEEEEEETTT-TEEE
T ss_pred EECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCc--Ccccc----ccCCCceEEEEeecc-ceEE
Confidence 8999999999999 599999999865432 23333332 45442 244 46799999999 9999
Q ss_pred EEeCC
Q 023864 261 YAYLQ 265 (276)
Q Consensus 261 vIDp~ 265 (276)
+-+.+
T Consensus 354 kw~~~ 358 (459)
T d1fwxa2 354 KWNIE 358 (459)
T ss_dssp EEEHH
T ss_pred EEecc
Confidence 88753
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.14 E-value=0.00012 Score=62.76 Aligned_cols=167 Identities=8% Similarity=-0.015 Sum_probs=111.5
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeCCEEEEEeCCCCc
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLN 181 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~~~v~V~D~~tlk 181 (276)
...+..+.|++|++++.++|.-....++++|+++++...+..-... .-..+++. ++.+++..-.++.+.+||..+.+
T Consensus 102 ~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~-~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~ 180 (311)
T d1nr0a1 102 SGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQAR-AMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK 180 (311)
T ss_dssp SSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSS-CEEEEEECSSSSCEEEEEETTSCEEEEETTTBE
T ss_pred cCcccccccccccccccccccccccccccccccccccccccccccc-ccccccccccceeeecccccccccccccccccc
Confidence 4456899999998877666643456689999999987655432222 22455554 34456667788999999999999
Q ss_pred EEEEEecCCC--CeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeee---CCEeeeeeeeeEEE-CCEEEEEeCCC
Q 023864 182 KLEEFTHQMK--DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY---KGREVRNLNELEFI-KGEVWANVWQV 255 (276)
Q Consensus 182 ~i~~~~~~~~--EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~---~g~pv~~lNELE~i-dG~lyANvw~s 255 (276)
.+..+.-... ....+++||+.|+.......|.++|..+.+.+....... .|+. ..++-|.+. +|...|..-.+
T Consensus 181 ~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~-~~V~~~~~s~~~~~l~tgs~D 259 (311)
T d1nr0a1 181 FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS-GSVFGLTWSPDGTKIASASAD 259 (311)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSS-SCEEEEEECTTSSEEEEEETT
T ss_pred cccccccccccccccccCcccccccccccccccccccccccccccccccccccccccc-ccccccccCCCCCEEEEEeCC
Confidence 8888864212 234466799999888778899999999988776654421 1111 123445565 45544444345
Q ss_pred CCeEEEEeCCCCcEEEEEE
Q 023864 256 WPCIPYAYLQAFGSSLVYV 274 (276)
Q Consensus 256 ~d~I~vIDp~T~~v~l~~~ 274 (276)
..|.+.|.++++. +.++
T Consensus 260 -g~v~iwd~~t~~~-~~~l 276 (311)
T d1nr0a1 260 -KTIKIWNVATLKV-EKTI 276 (311)
T ss_dssp -SEEEEEETTTTEE-EEEE
T ss_pred -CeEEEEECCCCcE-EEEE
Confidence 7888889999653 4443
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.08 E-value=0.00013 Score=62.17 Aligned_cols=155 Identities=10% Similarity=0.021 Sum_probs=104.4
Q ss_pred CCCceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCC--CceEEEEEEe--CCEEEEEEeeCCEEEEEeCC
Q 023864 104 RAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEG--SYFGEGLTLL--GEKLFQVTWLQKTGFIYDQN 178 (276)
Q Consensus 104 ~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~--~~FgEGit~~--g~~LyqlTwk~~~v~V~D~~ 178 (276)
......+.|++++. ++.++| .+..|+.||..+++......... .-+-..+++. ++.+++.--.++.+.+||..
T Consensus 159 ~~~v~~~~~~~~~~~~~~~~~--~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~ 236 (325)
T d1pgua1 159 SQRINACHLKQSRPMRSMTVG--DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK 236 (325)
T ss_dssp SSCEEEEEECSSSSCEEEEEE--TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT
T ss_pred ccccccccccccccceEEEee--cccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeec
Confidence 44556899998864 455555 57889999999998877664432 2234456665 35777777789999999999
Q ss_pred CCcEEEEEecCCC--C--eeEEe-eCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEe
Q 023864 179 NLNKLEEFTHQMK--D--GWGLA-TDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANV 252 (276)
Q Consensus 179 tlk~i~~~~~~~~--E--GWGLT-~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANv 252 (276)
+.+.+.++..... . -|.++ +||+.|+.......|.++|.++.+.++++.+..+......+ ...+. ++.|. ..
T Consensus 237 ~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-s~ 314 (325)
T d1pgua1 237 SGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQV-GVVATGNGRII-SL 314 (325)
T ss_dssp TCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEE-EEEEEETTEEE-EE
T ss_pred cccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEE-EEEECCCCEEE-EE
Confidence 9999998863211 1 23443 68888877666778999999999999998876543322212 12233 34554 44
Q ss_pred CCCCCeEEEEe
Q 023864 253 WQVWPCIPYAY 263 (276)
Q Consensus 253 w~s~d~I~vID 263 (276)
-.+ ..|.+-|
T Consensus 315 s~d-g~i~vwd 324 (325)
T d1pgua1 315 SLD-GTLNFYE 324 (325)
T ss_dssp ETT-SCEEEEE
T ss_pred ECC-CEEEEEE
Confidence 345 6676655
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.00 E-value=0.00031 Score=59.80 Aligned_cols=160 Identities=7% Similarity=-0.059 Sum_probs=105.3
Q ss_pred ceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeCCEEEEEeCCCCcEEE
Q 023864 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLNKLE 184 (276)
Q Consensus 107 TQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~~~v~V~D~~tlk~i~ 184 (276)
...+.|+++|+.+.++|.-.+..++.++.++++.+....-... .-..+++. ++.+.+..-.++.+.+||..+.+...
T Consensus 118 v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~ 196 (325)
T d1pgua1 118 ISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQ-RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA 196 (325)
T ss_dssp EEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSS-CEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEE
T ss_pred EEEEEECCCCCccceeeccccceEEEEeecccccceeeeeccc-ccccccccccccceEEEeecccccccccccccccce
Confidence 4678999998755544433567899999999998776543222 22345554 34455556678999999999999888
Q ss_pred EEecC-CCCe----eEEeeCCCEEEE-ECCCceEEEEcCCCCcEEEEEEeeeCCEeeee-eeeeEEECCEEEEEeCCCCC
Q 023864 185 EFTHQ-MKDG----WGLATDGKVLFG-SDGSSMLYQIDPQTLKVIRKDIVRYKGREVRN-LNELEFIKGEVWANVWQVWP 257 (276)
Q Consensus 185 ~~~~~-~~EG----WGLT~Dg~~L~v-SDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~-lNELE~idG~lyANvw~s~d 257 (276)
++... ..++ ..++||+..+++ ...+..|.++|.++++.++++.-.. .++.. ..-+.+.||+.++..-.+ .
T Consensus 197 ~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~--~~v~~~~~s~~~~dg~~l~s~s~D-~ 273 (325)
T d1pgua1 197 SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQ--EPVQGGIFALSWLDSQKFATVGAD-A 273 (325)
T ss_dssp EECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTT--BCCCSCEEEEEESSSSEEEEEETT-S
T ss_pred ecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccc--cccccceeeeeccCCCEEEEEeCC-C
Confidence 87542 1122 345677655554 4457789999999999887765322 22221 112234577766666566 8
Q ss_pred eEEEEeCCCCcEE
Q 023864 258 CIPYAYLQAFGSS 270 (276)
Q Consensus 258 ~I~vIDp~T~~v~ 270 (276)
.|.+-|.++++.+
T Consensus 274 ~i~iwd~~~~~~~ 286 (325)
T d1pgua1 274 TIRVWDVTTSKCV 286 (325)
T ss_dssp EEEEEETTTTEEE
T ss_pred eEEEEECCCCCEE
Confidence 8989999996644
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.99 E-value=0.0004 Score=55.31 Aligned_cols=156 Identities=14% Similarity=0.090 Sum_probs=101.7
Q ss_pred EEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEE-----------------
Q 023864 95 VVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL----------------- 157 (276)
Q Consensus 95 Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~----------------- 157 (276)
.+.++.. .......+.+++++.++.+++ .+..|+.+|..+++......-... ....++.
T Consensus 135 ~~~~~~~-~~~~~~~~~~~~~~~~l~~~~--~d~~v~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~ 210 (317)
T d1vyhc1 135 CVKTFTG-HREWVRMVRPNQDGTLIASCS--NDQTVRVWVVATKECKAELREHRH-VVECISWAPESSYSSISEATGSET 210 (317)
T ss_dssp EEEEEEC-CSSCEEEEEECTTSSEEEEEE--TTSCEEEEETTTCCEEEEECCCSS-CEEEEEECCSCGGGGGGGCCSCC-
T ss_pred eeeEEcc-CCCcceeeecccCCCEEEEEe--CCCeEEEEeeccceeeEEEecCCC-CceEEEEeeccccceeecccccee
Confidence 4445543 244557899999988887766 678899999999987765532211 1112221
Q ss_pred ----eCCEEEEEEeeCCEEEEEeCCCCcEEEEEecCCC--CeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeC
Q 023864 158 ----LGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMK--DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYK 231 (276)
Q Consensus 158 ----~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~--EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~ 231 (276)
..+.+....-.++.+.++|..+.+.+.++.-... ....+.+||+.|+....+..|.++|.++.+.++++....
T Consensus 211 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~- 289 (317)
T d1vyhc1 211 KKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE- 289 (317)
T ss_dssp ------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCS-
T ss_pred eeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCC-
Confidence 1234566667889999999999999999864311 223456899988887777889999999999887776432
Q ss_pred CEeeeeeeeeEEE-CCEEEEEeCCCCCeEE
Q 023864 232 GREVRNLNELEFI-KGEVWANVWQVWPCIP 260 (276)
Q Consensus 232 g~pv~~lNELE~i-dG~lyANvw~s~d~I~ 260 (276)
. .++-|.+. +|.+.|..-.+ ..|.
T Consensus 290 -~---~V~~~~~s~~~~~l~s~s~D-g~i~ 314 (317)
T d1vyhc1 290 -H---FVTSLDFHKTAPYVVTGSVD-QTVK 314 (317)
T ss_dssp -S---CEEEEEECSSSSCEEEEETT-SEEE
T ss_pred -C---CEEEEEEcCCCCEEEEEeCC-CeEE
Confidence 2 34455565 45444444333 4443
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.99 E-value=0.00058 Score=55.85 Aligned_cols=164 Identities=10% Similarity=0.054 Sum_probs=91.7
Q ss_pred EEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEEEEEeeCCEEEEEe
Q 023864 98 EFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYD 176 (276)
Q Consensus 98 ~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~LyqlTwk~~~v~V~D 176 (276)
+..+....-+..|.|+|||+++.+++ .+..|+.||+++|+.++...-...---..+++.. ++++...+ ++.+.++|
T Consensus 6 ~~~~GH~~~V~~l~~s~dg~~l~s~s--~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~-d~~v~~~~ 82 (299)
T d1nr0a2 6 QVRYGHNKAITALSSSADGKTLFSAD--AEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSW-DDHLKVVP 82 (299)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEE--TTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEET-TTEEEEEC
T ss_pred eEcCCCCCCcEEEEECCCCCEEEEEc--CCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccc-eeeEEEec
Confidence 34444566678999999998777766 5678999999999987654322222234556543 45555543 66777777
Q ss_pred CCCCc-----EEE------------------------------------EEecC-CCCeeEEeeCCCEEEEECCCceEEE
Q 023864 177 QNNLN-----KLE------------------------------------EFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQ 214 (276)
Q Consensus 177 ~~tlk-----~i~------------------------------------~~~~~-~~EGWGLT~Dg~~L~vSDGS~~L~v 214 (276)
....+ ... +.... ......+++|++.|++......|.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~ 162 (299)
T d1nr0a2 83 AGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHV 162 (299)
T ss_dssp SSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEE
T ss_pred cCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 53221 000 00000 0111224456666666555567777
Q ss_pred EcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCCCCCeEEEEeCCCCcE
Q 023864 215 IDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 215 iDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~s~d~I~vIDp~T~~v 269 (276)
+|.++.+........ ... .++-+++. +|...+..-.+ ..|.+.|..+++.
T Consensus 163 ~d~~~~~~~~~~~~~-~~~---~i~~~~~~~~~~~l~~~~~d-~~i~~~~~~~~~~ 213 (299)
T d1nr0a2 163 YKLSGASVSEVKTIV-HPA---EITSVAFSNNGAFLVATDQS-RKVIPYSVANNFE 213 (299)
T ss_dssp EEEETTEEEEEEEEE-CSS---CEEEEEECTTSSEEEEEETT-SCEEEEEGGGTTE
T ss_pred ccccccccccccccc-ccc---cccccccccccccccccccc-ccccccccccccc
Confidence 777666544322221 111 34455554 34434434345 7788888877543
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.96 E-value=0.00016 Score=62.54 Aligned_cols=155 Identities=7% Similarity=-0.059 Sum_probs=94.6
Q ss_pred ceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCc-eEEEEEEe--CCEEEEEEeeCCEEEEEeCCCCcEE
Q 023864 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSY-FGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLNKL 183 (276)
Q Consensus 107 TQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~-FgEGit~~--g~~LyqlTwk~~~v~V~D~~tlk~i 183 (276)
+..+.|++||+++.+++ .+..|+.||+++++......+..+- --..+++. ++.|... -.++++.+||..+.+..
T Consensus 10 It~~~~s~dg~~la~~~--~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~-s~D~~i~vWd~~~~~~~ 86 (371)
T d1k8kc_ 10 ISCHAWNKDRTQIAICP--NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC-GTDRNAYVWTLKGRTWK 86 (371)
T ss_dssp CCEEEECTTSSEEEEEC--SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEE-ETTSCEEEEEEETTEEE
T ss_pred eEEEEECCCCCEEEEEe--CCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEE-ECCCeEEEEeecccccc
Confidence 46899999998776655 5568999999999866655554311 12456665 3444333 35789999999887766
Q ss_pred EEEecC--CC--CeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCCCCCe
Q 023864 184 EEFTHQ--MK--DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQVWPC 258 (276)
Q Consensus 184 ~~~~~~--~~--EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~s~d~ 258 (276)
..+... .. ....+.+|++.|+...++..|.+++.+.............++. ..+.-+.+. ||..+|..-.+ ..
T Consensus 87 ~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~-~~v~~v~~~p~~~~l~s~s~D-~~ 164 (371)
T d1k8kc_ 87 PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIR-STVLSLDWHPNSVLLAAGSCD-FK 164 (371)
T ss_dssp EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCC-SCEEEEEECTTSSEEEEEETT-SC
T ss_pred cccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccc-cccccccccccccceeccccC-cE
Confidence 665432 11 2233568999999877777777766554433322222222111 123334454 56666655555 67
Q ss_pred EEEEeCCC
Q 023864 259 IPYAYLQA 266 (276)
Q Consensus 259 I~vIDp~T 266 (276)
|.+.|...
T Consensus 165 v~v~~~~~ 172 (371)
T d1k8kc_ 165 CRIFSAYI 172 (371)
T ss_dssp EEEEECCC
T ss_pred EEEEeecc
Confidence 77777654
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.95 E-value=0.00065 Score=55.16 Aligned_cols=147 Identities=9% Similarity=-0.071 Sum_probs=95.7
Q ss_pred ecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe-CCEEEEEEeeCCEEEEEeCCCCcEEEEEecCCC
Q 023864 113 AENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMK 191 (276)
Q Consensus 113 ~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~-g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~ 191 (276)
.+++.++..+. .+..|+.||..+++.+....-.... ...+... ++......-.++.+.++|..+.+.+..+.....
T Consensus 168 ~~~~~~~~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~ 244 (355)
T d1nexb2 168 SGHGNIVVSGS--YDNTLIVWDVAQMKCLYILSGHTDR-IYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA 244 (355)
T ss_dssp EEETTEEEEEE--TTSCEEEEETTTTEEEEEECCCSSC-EEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred ccccceeeeec--ccceeeeeecccccceeeeeccccc-cccccccccceeeecccccceEEeeeccccccccccccccc
Confidence 33455544433 6678999999999887665433222 2334443 345556666889999999999999998864323
Q ss_pred CeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCCCCeEEEEeCCCCcE
Q 023864 192 DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 192 EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s~d~I~vIDp~T~~v 269 (276)
.-..++.+++.|+....+..|.++|.++++..-.. ... .+..+. .-..++++.+.- .+ +.|.+-|.+||+.
T Consensus 245 ~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~--~~~~~~-~~~~~~~~l~~g-~d-~~i~vwd~~tg~~ 315 (355)
T d1nexb2 245 LVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSY--HHT--NLSAIT-TFYVSDNILVSG-SE-NQFNIYNLRSGKL 315 (355)
T ss_dssp CCCEEEECSSEEEEECTTSEEEEEETTTCCEEEEE--ECT--TCCCCC-EEEECSSEEEEE-ET-TEEEEEETTTCCB
T ss_pred cccccccccceeeeeecccccccccccccceeccc--ccC--CceEEE-EEcCCCCEEEEE-eC-CEEEEEECCCCCE
Confidence 34568888999988877889999999988654322 211 111111 012356665554 35 8888889988764
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.94 E-value=0.00066 Score=57.23 Aligned_cols=162 Identities=12% Similarity=0.032 Sum_probs=97.9
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeCCEEEEEeCCCCc
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLN 181 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~~~v~V~D~~tlk 181 (276)
......+.+.+++..+.+++ ....|+.||..+.............. .+... ++.++...-.++.+.++|..+.+
T Consensus 163 ~~~v~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~ 238 (388)
T d1erja_ 163 EQDIYSLDYFPSGDKLVSGS--GDRTVRIWDLRTGQCSLTLSIEDGVT--TVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238 (388)
T ss_dssp SSCEEEEEECTTSSEEEEEE--TTSEEEEEETTTTEEEEEEECSSCEE--EEEECSTTCCEEEEEETTSCEEEEETTTCC
T ss_pred cccccccccccccccccccc--cceeeeeeeccccccccccccccccc--cccccCCCCCeEEEEcCCCeEEEeecccCc
Confidence 45567899998876555555 67789999999998777665544432 33332 45666666788999999999999
Q ss_pred EEEEEecCC------C---CeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEee-------eeeeeeEEE-
Q 023864 182 KLEEFTHQM------K---DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREV-------RNLNELEFI- 244 (276)
Q Consensus 182 ~i~~~~~~~------~---EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv-------~~lNELE~i- 244 (276)
.+.++.... . ....+++||+.|+....+..|.++|..+.+..........+... ..++-+.+.
T Consensus 239 ~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 318 (388)
T d1erja_ 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ 318 (388)
T ss_dssp EEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECG
T ss_pred cceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECC
Confidence 888875321 0 12335678999988777889999998887665443332211110 122333343
Q ss_pred CCEEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 245 KGEVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 245 dG~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
+|...+.--.+ +.|.+.|.++++.+
T Consensus 319 ~~~~l~sg~~d-g~i~vwd~~~~~~~ 343 (388)
T d1erja_ 319 NDEYILSGSKD-RGVLFWDKKSGNPL 343 (388)
T ss_dssp GGCEEEEEETT-SEEEEEETTTCCEE
T ss_pred CCCEEEEEeCC-CEEEEEECCCCcEE
Confidence 45444433355 78999999997754
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.94 E-value=0.002 Score=50.65 Aligned_cols=114 Identities=12% Similarity=0.015 Sum_probs=80.0
Q ss_pred EE-EEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEe
Q 023864 109 GL-LYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFT 187 (276)
Q Consensus 109 GL-~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~ 187 (276)
|+ .++.||+++.|++ .+..|+.||+++++.+...+-..... -.++..++.| +..-.++.+.++|..+........
T Consensus 17 ~V~c~~~d~~~l~sgs--~Dg~i~vWd~~~~~~~~~l~~H~~~V-~~v~~~~~~l-~s~s~D~~i~~~~~~~~~~~~~~~ 92 (293)
T d1p22a2 17 GVYCLQYDDQKIVSGL--RDNTIKIWDKNTLECKRILTGHTGSV-LCLQYDERVI-ITGSSDSTVRVWDVNTGEMLNTLI 92 (293)
T ss_dssp CEEEEECCSSEEEEEE--SSSCEEEEESSSCCEEEEECCCSSCE-EEEECCSSEE-EEEETTSCEEEEESSSCCEEEEEC
T ss_pred CEEEEEEcCCEEEEEe--CCCeEEEEECCCCcEEEEEecCCCCE-eeeeccccee-eccccccccccccccccccccccc
Confidence 44 3566777777766 67899999999999988765333222 3566555544 444578899999999998888876
Q ss_pred cCCCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEE
Q 023864 188 HQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKD 226 (276)
Q Consensus 188 ~~~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I 226 (276)
...............+....+...+.++|..+.+.....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (293)
T d1p22a2 93 HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLR 131 (293)
T ss_dssp CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEE
T ss_pred ccccccccccccccceeecccccceeEeecccccccccc
Confidence 554456666677777777777778888887776544333
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.94 E-value=0.00024 Score=57.90 Aligned_cols=152 Identities=13% Similarity=0.102 Sum_probs=93.3
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEE
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGF 173 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~ 173 (276)
+.+..... .......+.+++++.++.+++ .+..|+.+|.++++.+....-..... ..+++.++.| +..-.++.+.
T Consensus 192 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~h~~~v-~~~~~~~~~l-~~~~~dg~i~ 266 (355)
T d1nexb2 192 KCLYILSG-HTDRIYSTIYDHERKRCISAS--MDTTIRIWDLENGELMYTLQGHTALV-GLLRLSDKFL-VSAAADGSIR 266 (355)
T ss_dssp EEEEEECC-CSSCEEEEEEETTTTEEEEEE--TTSCEEEEETTTCCEEEEECCCSSCC-CEEEECSSEE-EEECTTSEEE
T ss_pred cceeeeec-cccccccccccccceeeeccc--ccceEEeeeccccccccccccccccc-ccccccccee-eeeecccccc
Confidence 34444443 233346788888876655555 56789999999999877765333222 3466666554 4445688999
Q ss_pred EEeCCCCcEEEEEecCCCCeeE-EeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEe
Q 023864 174 IYDQNNLNKLEEFTHQMKDGWG-LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANV 252 (276)
Q Consensus 174 V~D~~tlk~i~~~~~~~~EGWG-LT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANv 252 (276)
+||.++.+..-.+......... +.++++.|.. -.++.|.++|.++++.++....+ ...+ ++-+.+.++.+.+..
T Consensus 267 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-g~d~~i~vwd~~tg~~~~~~~~~-~~~~---V~~v~~~~~~~~~~~ 341 (355)
T d1nexb2 267 GWDANDYSRKFSYHHTNLSAITTFYVSDNILVS-GSENQFNIYNLRSGKLVHANILK-DADQ---IWSVNFKGKTLVAAV 341 (355)
T ss_dssp EEETTTCCEEEEEECTTCCCCCEEEECSSEEEE-EETTEEEEEETTTCCBCCSCTTT-TCSE---EEEEEEETTEEEEEE
T ss_pred cccccccceecccccCCceEEEEEcCCCCEEEE-EeCCEEEEEECCCCCEEEEEecC-CCCC---EEEEEEcCCeEEEEE
Confidence 9999998876666543112222 3456655544 33568999999999876432222 1223 344557666666655
Q ss_pred CCC
Q 023864 253 WQV 255 (276)
Q Consensus 253 w~s 255 (276)
-.+
T Consensus 342 s~d 344 (355)
T d1nexb2 342 EKD 344 (355)
T ss_dssp ESS
T ss_pred ECC
Confidence 444
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.92 E-value=0.0013 Score=53.35 Aligned_cols=171 Identities=12% Similarity=0.060 Sum_probs=108.3
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCc----EEEEee----------------------
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGK----VEAINQ---------------------- 145 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgk----v~~~~~---------------------- 145 (276)
+.+.+.+++. ....+..+.|++++.++.+++ .+..+..++..... ......
T Consensus 86 ~~~~~~~~~~-~~~~v~~v~~~~~~~~l~~~~--~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (340)
T d1tbga_ 86 TTNKVHAIPL-RSSWVMTCAYAPSGNYVACGG--LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162 (340)
T ss_dssp TTEEEEEEEC-SCSCEEEEEECTTSSEEEEEE--TTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEET
T ss_pred cceeEEEEec-ccccEEeeEeeccceeeeeec--ccceeecccccccccccccceecccccccccccccccccccccccc
Confidence 3456777775 356678999999988776666 56677777755421 111100
Q ss_pred --------cC-----------CCceEEEEEE-eCCEEEEEEeeCCEEEEEeCCCCcEEEEEecCCC--CeeEEeeCCCEE
Q 023864 146 --------ME-----------GSYFGEGLTL-LGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMK--DGWGLATDGKVL 203 (276)
Q Consensus 146 --------l~-----------~~~FgEGit~-~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~--EGWGLT~Dg~~L 203 (276)
.. .... ..... ..+.++...-.++.+.+||..+.+.+.++..... ....+.+||+.|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l 241 (340)
T d1tbga_ 163 DTTCALWDIETGQQTTTFTGHTGDV-MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 241 (340)
T ss_dssp TTEEEEEETTTTEEEEEEECCSSCE-EEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred cccccccccccccccccccccceeE-eeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEE
Confidence 00 0000 11111 1346667777889999999999999998863211 233456899999
Q ss_pred EEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 204 FGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 204 ~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
+.......|.++|..+.+............+ ++-+.+. +|.+.+.--.. ..|.+.|..+++.+
T Consensus 242 ~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~---i~~~~~s~~~~~l~~g~~d-g~i~iwd~~~~~~~ 305 (340)
T d1tbga_ 242 ATGSDDATCRLFDLRADQELMTYSHDNIICG---ITSVSFSKSGRLLLAGYDD-FNCNVWDALKADRA 305 (340)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCTTCCSC---EEEEEECSSSCEEEEEETT-SCEEEEETTTCCEE
T ss_pred EEEeCCCeEEEEeecccccccccccccccCc---eEEEEECCCCCEEEEEECC-CEEEEEECCCCcEE
Confidence 8877788999999999887766654432222 3445565 45444444355 78999999986644
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.84 E-value=0.0015 Score=53.04 Aligned_cols=137 Identities=15% Similarity=0.093 Sum_probs=92.7
Q ss_pred eEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe-CCEEEEEEeeCCEEEEEeCCCCcEEEEE
Q 023864 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (276)
Q Consensus 108 QGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~-g~~LyqlTwk~~~v~V~D~~tlk~i~~~ 186 (276)
....+.+++.++.+++ .+..|+.||+.+++.+....-... .-..+++. +++++...-.++.+.++|..+.+.+..+
T Consensus 188 ~~~~~~~~~~~~~~~~--~d~~v~i~d~~~~~~~~~~~~h~~-~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~ 264 (340)
T d1tbga_ 188 MSLSLAPDTRLFVSGA--CDASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264 (340)
T ss_dssp EEEEECTTSSEEEEEE--TTTEEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred eeeccccccceeEEee--cCceEEEEECCCCcEEEEEeCCCC-CeEEEEECCCCCEEEEEeCCCeEEEEeeccccccccc
Confidence 4455555566776655 778999999999998877653332 22356665 3445555567899999999999998888
Q ss_pred ecC-CCCe---eEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEe
Q 023864 187 THQ-MKDG---WGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANV 252 (276)
Q Consensus 187 ~~~-~~EG---WGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANv 252 (276)
... ...+ ..+++||+.|+.......|.++|..+++.+.++.-.. . .++-|.+. ||...|..
T Consensus 265 ~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~--~---~V~~l~~s~d~~~l~s~ 330 (340)
T d1tbga_ 265 SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD--N---RVSCLGVTDDGMAVATG 330 (340)
T ss_dssp CCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCS--S---CEEEEEECTTSSCEEEE
T ss_pred ccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCC--C---CEEEEEEeCCCCEEEEE
Confidence 643 1122 2356789999887777889999999999887765322 2 34445565 45544444
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.84 E-value=0.0003 Score=57.47 Aligned_cols=156 Identities=10% Similarity=-0.001 Sum_probs=103.6
Q ss_pred ceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEE
Q 023864 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (276)
Q Consensus 107 TQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~ 186 (276)
...+.+.+++.++.++ ..+.+..++..+++.......... ...+...++.+.+....++.+.+||..+.+....+
T Consensus 83 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~ 157 (287)
T d1pgua2 83 PKVASANNDGFTAVLT---NDDDLLILQSFTGDIIKSVRLNSP--GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDL 157 (287)
T ss_dssp EEEEEECSSSEEEEEE---TTSEEEEEETTTCCEEEEEECSSC--EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEEC
T ss_pred eeeeeeccCCceEEEe---ecccceeeeccceeeeeeccccce--eeeeeccCcceeeeccccceeeeeeccccceeeee
Confidence 4577888878766543 346788999999999888877655 34566677788777777788999999877776666
Q ss_pred ecCC-CCee--EEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEE-----------ECCEEEEEe
Q 023864 187 THQM-KDGW--GLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEF-----------IKGEVWANV 252 (276)
Q Consensus 187 ~~~~-~EGW--GLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~-----------idG~lyANv 252 (276)
..+. ..-. .+++||++|++.+....|.++|..+.+.+...-..- .. .++-+.+ .++.++|.-
T Consensus 158 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h-~~---~v~~~~~~p~~~~~~~~~~~~~~l~sg 233 (287)
T d1pgua2 158 KTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFR-TS---KINAISWKPAEKGANEEEIEEDLVATG 233 (287)
T ss_dssp SSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCC-SS---CEEEEEECCCC------CCSCCEEEEE
T ss_pred eeccCCceeEEEeccCccccccccccccccceeeccccccccccccc-cc---ccceeeecccccccccccCCCCeeEee
Confidence 5431 2233 356899999998888899999999987654321111 11 2233333 244455554
Q ss_pred CCCCCeEEEEeCCCCcEEEE
Q 023864 253 WQVWPCIPYAYLQAFGSSLV 272 (276)
Q Consensus 253 w~s~d~I~vIDp~T~~v~l~ 272 (276)
-.+ ..|.+-|.+++...+.
T Consensus 234 s~D-~~i~iw~~~~~~~~~~ 252 (287)
T d1pgua2 234 SLD-TNIFIYSVKRPMKIIK 252 (287)
T ss_dssp ETT-SCEEEEESSCTTCCEE
T ss_pred cCC-CeEEEEECCCCCeEEE
Confidence 445 6777778766554433
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.82 E-value=0.00079 Score=58.47 Aligned_cols=123 Identities=13% Similarity=0.036 Sum_probs=84.3
Q ss_pred CCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCc-----eEEEEEE--eCCEEEEEEeeC--CEE
Q 023864 102 DPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSY-----FGEGLTL--LGEKLFQVTWLQ--KTG 172 (276)
Q Consensus 102 d~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~-----FgEGit~--~g~~LyqlTwk~--~~v 172 (276)
....|...+.|++|+.|. +++ .+..|++||+++++.+...+..... --..+++ ++..|....... +.+
T Consensus 182 ~~~~~~~~v~~s~dg~la-sgs--~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i 258 (393)
T d1sq9a_ 182 TPSQFATSVDISERGLIA-TGF--NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCI 258 (393)
T ss_dssp SSCCCCCEEEECTTSEEE-EEC--TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEE
T ss_pred CCCCcEEEEEECCCCEEE-EEe--CCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCccee
Confidence 345667789999988554 444 6788999999999987766433211 1223444 345555544433 357
Q ss_pred EEEeCCCCcEEEEEecC--------CCCe-------eEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEE
Q 023864 173 FIYDQNNLNKLEEFTHQ--------MKDG-------WGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDI 227 (276)
Q Consensus 173 ~V~D~~tlk~i~~~~~~--------~~EG-------WGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~ 227 (276)
.+||.++.+.+.++... ...| ..++|||+.|+.+..+.+|.++|.++++.+.++.
T Consensus 259 ~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~ 328 (393)
T d1sq9a_ 259 TLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN 328 (393)
T ss_dssp EEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred eecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEEC
Confidence 88999999999888532 0011 3466899988777678899999999999888775
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.74 E-value=0.00057 Score=59.11 Aligned_cols=114 Identities=18% Similarity=0.140 Sum_probs=80.1
Q ss_pred EeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEEeeCCEEEEEeCCCCcEEEEEecC-CCCeeEEeeCCCEEEEECCC
Q 023864 133 VALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDGS 209 (276)
Q Consensus 133 iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~-~~EGWGLT~Dg~~L~vSDGS 209 (276)
+-+.+.+++.. .+..-|||-..+ +++||-+...+++++.+|+++.+. ..+..+ .+-+.+++.||..++.+.
T Consensus 4 ~~~~~~~~~~~---~~~~LgEgp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~-~~~~~~~~~~~i~~~~dg~l~va~~-- 77 (295)
T d2ghsa1 4 VFPFAGRVLDE---TPMLLGEGPTFDPASGTAWWFNILERELHELHLASGRK-TVHALPFMGSALAKISDSKQLIASD-- 77 (295)
T ss_dssp EECCCCEEEEC---SCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE-EEEECSSCEEEEEEEETTEEEEEET--
T ss_pred ccceeEEEEcC---CCCeeeeCCeEECCCCEEEEEECCCCEEEEEECCCCeE-EEEECCCCcEEEEEecCCCEEEEEe--
Confidence 34555665443 235578999987 589999999999999999999765 466665 233444566765444443
Q ss_pred ceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCEEEEEeC
Q 023864 210 SMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVW 253 (276)
Q Consensus 210 ~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~lyANvw 253 (276)
+.|..+|+++.+...-..+ ..+.+...+|++.+. +|.+|+...
T Consensus 78 ~gl~~~d~~tg~~~~l~~~-~~~~~~~~~nd~~vd~~G~iw~~~~ 121 (295)
T d2ghsa1 78 DGLFLRDTATGVLTLHAEL-ESDLPGNRSNDGRMHPSGALWIGTM 121 (295)
T ss_dssp TEEEEEETTTCCEEEEECS-STTCTTEEEEEEEECTTSCEEEEEE
T ss_pred CccEEeecccceeeEEeee-ecCCCcccceeeEECCCCCEEEEec
Confidence 6799999999987644333 345566688988876 688888754
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.73 E-value=0.00068 Score=54.37 Aligned_cols=124 Identities=12% Similarity=0.105 Sum_probs=78.8
Q ss_pred EEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcE----EEEeecCCCceEEEEEEe--CCEEEEEEe
Q 023864 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKV----EAINQMEGSYFGEGLTLL--GEKLFQVTW 167 (276)
Q Consensus 94 ~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv----~~~~~l~~~~FgEGit~~--g~~LyqlTw 167 (276)
|+|+ +...+.--+..|.|+||+.++.+++ .+..|++||+++++. .....-..... .+++. ++.+.+.--
T Consensus 2 ~~v~-~~~~h~d~I~~l~fsp~~~~L~s~s--~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~--~v~f~~~~~~~l~sg~ 76 (342)
T d1yfqa_ 2 QIVQ-IEQAPKDYISDIKIIPSKSLLLITS--WDGSLTVYKFDIQAKNVDLLQSLRYKHPLL--CCNFIDNTDLQIYVGT 76 (342)
T ss_dssp EEEE-CSSCCSSCEEEEEEEGGGTEEEEEE--TTSEEEEEEEETTTTEEEEEEEEECSSCEE--EEEEEESSSEEEEEEE
T ss_pred CeEE-cCCCCCCCEEEEEEeCCCCEEEEEE--CCCeEEEEEccCCCcceEEEEecCCCCCEE--EEEEeCCCCCEEEEcc
Confidence 4565 3333556678999999988777666 678999999876542 22222233333 34443 455555556
Q ss_pred eCCEEEEEeCCCCcEEEEEecCC-CCee--EEeeCCCEEEEECCCceEEEEcCCCCcE
Q 023864 168 LQKTGFIYDQNNLNKLEEFTHQM-KDGW--GLATDGKVLFGSDGSSMLYQIDPQTLKV 222 (276)
Q Consensus 168 k~~~v~V~D~~tlk~i~~~~~~~-~EGW--GLT~Dg~~L~vSDGS~~L~viDp~t~~v 222 (276)
.++.+.++|..+........... .... ...+++..++.......+.++|..+.+.
T Consensus 77 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~ 134 (342)
T d1yfqa_ 77 VQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD 134 (342)
T ss_dssp TTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT
T ss_pred cccceeeeecccccccccccccccccccccccccccccccccccccccceeecccccc
Confidence 88999999998887776665331 1112 2344566666655678888998765443
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.65 E-value=0.00019 Score=68.53 Aligned_cols=112 Identities=12% Similarity=0.076 Sum_probs=83.4
Q ss_pred EeCCEEEEEEeeCCEEEEEeC-CCCcEEEEEecCCCCe-----------eEEeeCCCEEEEECCCceEEEEcCCCCcEEE
Q 023864 157 LLGEKLFQVTWLQKTGFIYDQ-NNLNKLEEFTHQMKDG-----------WGLATDGKVLFGSDGSSMLYQIDPQTLKVIR 224 (276)
Q Consensus 157 ~~g~~LyqlTwk~~~v~V~D~-~tlk~i~~~~~~~~EG-----------WGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~ 224 (276)
+.|+.+|+.+-.+++++.+|. +|.+++-++..+.+.+ =|++..+..+|+.+.+.+|+-+|.+|++++-
T Consensus 60 v~~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~~~~g~l~alda~tG~~~w 139 (571)
T d2ad6a1 60 VIGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp EETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EECCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceeeCCeEEEEeCCCcEEeeehhhhhhhc
Confidence 568999999977788999997 5899999986331111 1456667899999988999999999999987
Q ss_pred EEEeee--CCEeeeeeeeeEEECCEEEEEeCC-----CCCeEEEEeCCCCcEEE
Q 023864 225 KDIVRY--KGREVRNLNELEFIKGEVWANVWQ-----VWPCIPYAYLQAFGSSL 271 (276)
Q Consensus 225 ~I~V~~--~g~pv~~lNELE~idG~lyANvw~-----s~d~I~vIDp~T~~v~l 271 (276)
+..+.+ .+..+.. --.+.++.||+..+. . ..|..+|.+||+..=
T Consensus 140 ~~~~~~~~~~~~~t~--~p~v~~~~vivg~~~~~~~~~-G~v~a~D~~TG~~~W 190 (571)
T d2ad6a1 140 EVEVCDPKVGSTLTQ--APFVAKDTVLMGCSGAELGVR-GAVNAFDLKTGELKW 190 (571)
T ss_dssp EEECCCGGGTCBCCS--CCEEETTEEEEECBCGGGTCC-CEEEEEETTTCCEEE
T ss_pred cccccccccccceee--cCeEeCCeEEEeecccccccc-CcEEEEECCCCcEEE
Confidence 777653 1111111 113668999988864 4 689999999988763
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.60 E-value=0.004 Score=50.00 Aligned_cols=139 Identities=14% Similarity=-0.013 Sum_probs=93.8
Q ss_pred CCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEecCCCCeeEEeeCCCEEEE
Q 023864 126 GRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFG 205 (276)
Q Consensus 126 g~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~EGWGLT~Dg~~L~v 205 (276)
.+..|+.+|+..++.+....-. ......+...+.. .+..-.++.+.++|..+.+.+.++......-.+++++++.|+.
T Consensus 155 ~d~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~-l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s 232 (342)
T d2ovrb2 155 YDFMVKVWDPETETCLHTLQGH-TNRVYSLQFDGIH-VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVS 232 (342)
T ss_dssp TTSCEEEEEGGGTEEEEEECCC-SSCEEEEEECSSE-EEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEE
T ss_pred CCCeEEEeecccceeeEEEcCc-ccccccccCCCCE-EEEEeCCCeEEEeecccceeeeEecccccceeEEecCCCEEEE
Confidence 5678999999988876654322 2222334444444 4455678999999999999998887543455678889998888
Q ss_pred ECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 206 SDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 206 SDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
...+..|.++|..+.+....+..... ......-+.+ ++.+++..-.+ ..|.+-|.++|+.+
T Consensus 233 ~s~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~s~s~D-g~i~iwd~~tg~~i 293 (342)
T d2ovrb2 233 GNADSTVKIWDIKTGQCLQTLQGPNK--HQSAVTCLQF-NKNFVITSSDD-GTVKLWDLKTGEFI 293 (342)
T ss_dssp EETTSCEEEEETTTCCEEEEECSTTS--CSSCEEEEEE-CSSEEEEEETT-SEEEEEETTTCCEE
T ss_pred EcCCCEEEEEecccccccccccccce--eeeceeeccc-CCCeeEEEcCC-CEEEEEECCCCCEE
Confidence 77788999999999988766654321 1112222333 44444444456 78999999997754
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.47 E-value=0.00069 Score=55.41 Aligned_cols=149 Identities=10% Similarity=0.027 Sum_probs=89.8
Q ss_pred eEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeC-CEEEEEEeeCCEEEEEeCCCCcEEEEE
Q 023864 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (276)
Q Consensus 108 QGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g-~~LyqlTwk~~~v~V~D~~tlk~i~~~ 186 (276)
..+.|++|+.++.+++ .+..|+.||+++++......+...---..+++.. ++..+..-.++.+.+||..+.+.+...
T Consensus 140 ~~~~~s~~~~~l~~g~--~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~ 217 (299)
T d1nr0a2 140 SCVALSNDKQFVAVGG--QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT 217 (299)
T ss_dssp EEEEECTTSCEEEEEE--TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC
T ss_pred cccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4688899887666555 6778999999998765543332221223556654 344455556889999998877665443
Q ss_pred ec-C-CC---CeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCCCCeEEE
Q 023864 187 TH-Q-MK---DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQVWPCIPY 261 (276)
Q Consensus 187 ~~-~-~~---EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s~d~I~v 261 (276)
.. . .. ....+++||+.|+....+..|.++|.++.+....+.... +....++-+.+.+|...+....+ ..|-+
T Consensus 218 ~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~l~s~s~D-~~i~i 294 (299)
T d1nr0a2 218 NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGA--HAMSSVNSVIWLNETTIVSAGQD-SNIKF 294 (299)
T ss_dssp CCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTS--STTSCEEEEEEEETTEEEEEETT-SCEEE
T ss_pred ccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecC--CCCCcEEEEEECCCCEEEEEeCC-CEEEE
Confidence 21 1 01 223457899998886667789999998876543333222 22223444555555444444333 44443
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.45 E-value=0.002 Score=55.28 Aligned_cols=172 Identities=12% Similarity=0.004 Sum_probs=101.1
Q ss_pred EEEEEEe-cCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCC-CceEEEEEEe-CCEEEEEEeeCC
Q 023864 94 QVVNEFP-HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG-SYFGEGLTLL-GEKLFQVTWLQK 170 (276)
Q Consensus 94 ~Vv~~~P-hd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~-~~FgEGit~~-g~~LyqlTwk~~ 170 (276)
+.+.++. | ..-+..|.|+||+.++.++| .+..|++||+++++......+.. ..--..+.+. +++.+.+.-.++
T Consensus 42 ~~~~~l~gH--~~~V~~l~fsp~~~~l~s~s--~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~ 117 (371)
T d1k8kc_ 42 VQVHELKEH--NGQVTGVDWAPDSNRIVTCG--TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSR 117 (371)
T ss_dssp EEEEEEECC--SSCEEEEEEETTTTEEEEEE--TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEecCC--CCCEEEEEECCCCCEEEEEE--CCCeEEEEeecccccccccccccccccccccccccccccceeecccC
Confidence 3455553 5 33457999999988777766 56789999999988766665543 2223455554 344455555778
Q ss_pred EEEEEeCCCCcEEEE---EecCCC-C--eeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEee-------------eC
Q 023864 171 TGFIYDQNNLNKLEE---FTHQMK-D--GWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVR-------------YK 231 (276)
Q Consensus 171 ~v~V~D~~tlk~i~~---~~~~~~-E--GWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~-------------~~ 231 (276)
.+.+++.+..+.... +..+.. . ...+.|||+.|.....+..|.++|....+........ ..
T Consensus 118 ~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (371)
T d1k8kc_ 118 VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES 197 (371)
T ss_dssp SEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC
T ss_pred cceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeec
Confidence 777777655443322 222211 1 2335679998877656678888887654322111100 00
Q ss_pred CEeeeeeeeeEEE-CCEEEEEeCCCCCeEEEEeCCCCcEE
Q 023864 232 GREVRNLNELEFI-KGEVWANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 232 g~pv~~lNELE~i-dG~lyANvw~s~d~I~vIDp~T~~v~ 270 (276)
......++.+.+. +|...|..... ..|.+.|.++++.+
T Consensus 198 ~~~~~~v~~~~~s~~g~~l~s~~~d-~~i~iwd~~~~~~~ 236 (371)
T d1k8kc_ 198 SSSCGWVHGVCFSANGSRVAWVSHD-STVCLADADKKMAV 236 (371)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETT-TEEEEEEGGGTTEE
T ss_pred cCccCcEEEEEeecccccccccccC-CcceEEeeecccce
Confidence 0111234555554 55555556566 88989998886654
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.43 E-value=0.00073 Score=64.02 Aligned_cols=115 Identities=11% Similarity=0.001 Sum_probs=82.5
Q ss_pred EEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEecC-----------CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEE
Q 023864 156 TLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ-----------MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIR 224 (276)
Q Consensus 156 t~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~-----------~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~ 224 (276)
.+.|++||+.+. ++.++.+|++|.+++-++... .....+.+..+..+|+.+.+..|+-+|.+|++++-
T Consensus 63 iv~~g~vyv~t~-~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~l~Alda~tG~~~w 141 (560)
T d1kv9a2 63 LFHDGVIYTSMS-WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIW 141 (560)
T ss_dssp EEETTEEEEEEG-GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEECCEEEEECC-CCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeCCCEEEEEECCCCcEEe
Confidence 367899999886 578999999999999998532 12234566667899999999999999999999998
Q ss_pred EEEeeeCCEeeeeeeeeEEECCEEEEEeCCCC----CeEEEEeCCCCcEEE
Q 023864 225 KDIVRYKGREVRNLNELEFIKGEVWANVWQVW----PCIPYAYLQAFGSSL 271 (276)
Q Consensus 225 ~I~V~~~g~pv~~lNELE~idG~lyANvw~s~----d~I~vIDp~T~~v~l 271 (276)
+..+.+........-=-.+.+|.|++...... ..|..+|++||+..=
T Consensus 142 ~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W 192 (560)
T d1kv9a2 142 SQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAW 192 (560)
T ss_dssp EEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEe
Confidence 77765421111100011256888888665540 359999999988753
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.35 E-value=0.0091 Score=56.47 Aligned_cols=160 Identities=9% Similarity=0.029 Sum_probs=106.7
Q ss_pred eEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEE----EEEEeCCEEEEEEee-----CCEEEEEeCC
Q 023864 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGE----GLTLLGEKLFQVTWL-----QKTGFIYDQN 178 (276)
Q Consensus 108 QGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgE----Git~~g~~LyqlTwk-----~~~v~V~D~~ 178 (276)
.|+++. ++++|..+. ...|..+|.+||++.-+..+...-.+. .-.+.++++|+.+.. .+.+..||++
T Consensus 109 rg~a~~-~~~i~~~~~---~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~ 184 (571)
T d2ad6a1 109 RGLAYG-AGQIVKKQA---NGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLK 184 (571)
T ss_dssp CCCEEE-TTEEEEECT---TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETT
T ss_pred Ccceee-CCeEEEEeC---CCcEEeeehhhhhhhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECC
Confidence 588887 589998764 368999999999998877665321111 224678999998873 6789999999
Q ss_pred CCcEEEEEecC-------------------------------------CCCee---EEeeCCCEEEEECC----------
Q 023864 179 NLNKLEEFTHQ-------------------------------------MKDGW---GLATDGKVLFGSDG---------- 208 (276)
Q Consensus 179 tlk~i~~~~~~-------------------------------------~~EGW---GLT~Dg~~L~vSDG---------- 208 (276)
|.+++-++... .+.-| .+.++...+|..-|
T Consensus 185 TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r 264 (571)
T d2ad6a1 185 TGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMR 264 (571)
T ss_dssp TCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGS
T ss_pred CCcEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCcccccc
Confidence 99999987632 01124 35666777776443
Q ss_pred ------CceEEEEcCCCCcEEEEEEeee------CCEeeeeeeeeEEECCEE--EEEeCCCCCeEEEEeCCCCcEEEE
Q 023864 209 ------SSMLYQIDPQTLKVIRKDIVRY------KGREVRNLNELEFIKGEV--WANVWQVWPCIPYAYLQAFGSSLV 272 (276)
Q Consensus 209 ------S~~L~viDp~t~~vi~~I~V~~------~g~pv~~lNELE~idG~l--yANvw~s~d~I~vIDp~T~~v~l~ 272 (276)
++.|.-+|++|++++=.-+... +.-.-..+.+++. +|+. .+.....+..+.++|.+||+.+..
T Consensus 265 ~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~-~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~ 341 (571)
T d2ad6a1 265 PGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPV-NGKMTPLLSHIDRNGILYTLNRENGNLIVA 341 (571)
T ss_dssp CSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEE-TTEEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ccccccccceeeeeccchhheecccccCccccccccccccceeeeec-cCccccceeeccccceEEEEecCCCcEeee
Confidence 6789999999999875544321 1111113334443 5542 233333337999999999987754
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=97.20 E-value=0.0096 Score=52.93 Aligned_cols=141 Identities=12% Similarity=0.188 Sum_probs=88.3
Q ss_pred ceEEEEe--cCC--EEEEEcCCCCCCeEEEEeCC--CCcEE--EEeecCCCceEEEEEEeC-CEEEEEEe----------
Q 023864 107 TQGLLYA--END--TLFESTGLYGRSSVRRVALE--TGKVE--AINQMEGSYFGEGLTLLG-EKLFQVTW---------- 167 (276)
Q Consensus 107 TQGL~~~--~dg--~LyeStG~yg~S~I~~iDl~--tgkv~--~~~~l~~~~FgEGit~~g-~~LyqlTw---------- 167 (276)
.-|+.+. +|| +||+-.-.++.++|..+++. ..++. ..+.-+.-.++--+++.+ +.+|..+.
T Consensus 99 PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~ 178 (340)
T d1v04a_ 99 PHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKS 178 (340)
T ss_dssp EEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHH
T ss_pred ccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhh
Confidence 4688764 345 57776544577888877764 33333 334455567788888875 67777753
Q ss_pred -------eCCEEEEEeCCCCcEEEE-EecCCCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEE-EeeeCCEeeee
Q 023864 168 -------LQKTGFIYDQNNLNKLEE-FTHQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKD-IVRYKGREVRN 237 (276)
Q Consensus 168 -------k~~~v~V~D~~tlk~i~~-~~~~~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I-~V~~~g~pv~~ 237 (276)
..+.++-||....+++.+ +.+ +.|.++++|++.|||++ ...+|++++.+.-+....+ .+...+.| .+
T Consensus 179 ~e~~~~~~~g~v~~~~~~~~~~~~~~l~~--pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~p-DN 255 (340)
T d1v04a_ 179 WEMHLGLAWSFVTYYSPNDVRVVAEGFDF--ANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLV-DN 255 (340)
T ss_dssp HHHHTTCCCEEEEEECSSCEEEEEEEESS--EEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEE-EE
T ss_pred hhHhhcCCceeEEEEcCCceEEEcCCCCc--cceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCC-Cc
Confidence 123455577776665543 343 59999999999999999 7888887765433222222 22223333 44
Q ss_pred eeeeEEE--CCEEEEEeC
Q 023864 238 LNELEFI--KGEVWANVW 253 (276)
Q Consensus 238 lNELE~i--dG~lyANvw 253 (276)
+ .+. +|.+|+...
T Consensus 256 i---~~d~~~g~lwva~~ 270 (340)
T d1v04a_ 256 I---SVDPVTGDLWVGCH 270 (340)
T ss_dssp E---EECTTTCCEEEEEE
T ss_pred c---EEecCCCEEEEEEC
Confidence 4 353 578998865
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.02 E-value=0.017 Score=49.67 Aligned_cols=155 Identities=14% Similarity=0.088 Sum_probs=98.2
Q ss_pred EEEEEcCCCCCCeEEEEeCCCC------------c---EEEEe--ecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCC
Q 023864 117 TLFESTGLYGRSSVRRVALETG------------K---VEAIN--QMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNN 179 (276)
Q Consensus 117 ~LyeStG~yg~S~I~~iDl~tg------------k---v~~~~--~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~t 179 (276)
..+.+++ .+..+++||+... . +.... ......|+..+++..+.+...--.++.+.+||..+
T Consensus 137 ~~~~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~ 214 (393)
T d1sq9a_ 137 HRLVATD--VKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELST 214 (393)
T ss_dssp EEEEEEE--TTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTT
T ss_pred cEEEEEc--CCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeecc
Confidence 4556666 5667888876421 1 11111 12234455667776665555666889999999999
Q ss_pred CcEEEEEecC-----CCC---eeEEeeCCCEEEEE-C-CC-ceEEEEcCCCCcEEEEEEeeeCCEe-e-------eeeee
Q 023864 180 LNKLEEFTHQ-----MKD---GWGLATDGKVLFGS-D-GS-SMLYQIDPQTLKVIRKDIVRYKGRE-V-------RNLNE 240 (276)
Q Consensus 180 lk~i~~~~~~-----~~E---GWGLT~Dg~~L~vS-D-GS-~~L~viDp~t~~vi~~I~V~~~g~p-v-------~~lNE 240 (276)
.+.+.+++.. ... ...++|||+.|+.. + ++ ..|.++|+++.+.++.+........ . ..++-
T Consensus 215 ~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~ 294 (393)
T d1sq9a_ 215 LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMS 294 (393)
T ss_dssp TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEE
T ss_pred cccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceee
Confidence 9999888632 111 23367899998773 2 44 3588999999999988765431111 0 12455
Q ss_pred eEEE-CCEEEEEeCCCCCeEEEEeCCCCcEEEEEEe
Q 023864 241 LEFI-KGEVWANVWQVWPCIPYAYLQAFGSSLVYVT 275 (276)
Q Consensus 241 LE~i-dG~lyANvw~s~d~I~vIDp~T~~v~l~~~~ 275 (276)
|.+. ||++.|..-.+ ..|.+=|.++|+ .+.++.
T Consensus 295 l~fspd~~~l~S~s~D-~~v~vWd~~~g~-~~~~l~ 328 (393)
T d1sq9a_ 295 LSFNDSGETLCSAGWD-GKLRFWDVKTKE-RITTLN 328 (393)
T ss_dssp EEECSSSSEEEEEETT-SEEEEEETTTTE-EEEEEE
T ss_pred eccCCCCCeeEEECCC-CEEEEEECCCCC-EEEEEC
Confidence 6665 67777777667 899999999964 445553
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=96.99 E-value=0.0079 Score=57.35 Aligned_cols=110 Identities=11% Similarity=0.117 Sum_probs=75.9
Q ss_pred CCEEEEEcCCCCCCeEEEEeC-CCCcEEEEeecCCC----------ceEEEEEEeCC------EEEEEEeeCCEEEEEeC
Q 023864 115 NDTLFESTGLYGRSSVRRVAL-ETGKVEAINQMEGS----------YFGEGLTLLGE------KLFQVTWLQKTGFIYDQ 177 (276)
Q Consensus 115 dg~LyeStG~yg~S~I~~iDl-~tgkv~~~~~l~~~----------~FgEGit~~g~------~LyqlTwk~~~v~V~D~ 177 (276)
||.||.+|. ..+.|..+|. +|||++=+...... ...-|+++.++ ++|..+. ++.++.+|+
T Consensus 62 ~g~ly~~t~--~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~-dg~l~Alda 138 (596)
T d1w6sa_ 62 DGKMYIHTS--FPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL-DGNVAALNA 138 (596)
T ss_dssp TTEEEEECS--TTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT-TSEEEEEET
T ss_pred CCEEEEeeC--CCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeC-CCCeEeecc
Confidence 589999876 4567999997 68998766532211 11247777654 4776654 689999999
Q ss_pred CCCcEEEEEecC-CCCeeEEee----CCCEEEEEC-C-----CceEEEEcCCCCcEEEEEE
Q 023864 178 NNLNKLEEFTHQ-MKDGWGLAT----DGKVLFGSD-G-----SSMLYQIDPQTLKVIRKDI 227 (276)
Q Consensus 178 ~tlk~i~~~~~~-~~EGWGLT~----Dg~~L~vSD-G-----S~~L~viDp~t~~vi~~I~ 227 (276)
+|.+++.++... ...++.++. .+..+|+.. + ...|.-+|++|++++=+..
T Consensus 139 ~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~ 199 (596)
T d1w6sa_ 139 ETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (596)
T ss_dssp TTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred ccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEee
Confidence 999999998643 223444442 355677744 2 4689999999999985544
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=96.96 E-value=0.0034 Score=59.37 Aligned_cols=113 Identities=12% Similarity=0.018 Sum_probs=78.7
Q ss_pred EeCCEEEEEEeeCCEEEEEeCCCCcEEEEEecCCCC-----------eeEEeeCCCEEEEECCCceEEEEcCCCCcEEEE
Q 023864 157 LLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKD-----------GWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRK 225 (276)
Q Consensus 157 ~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~E-----------GWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~ 225 (276)
+.|++||+.+. .++++.+|++|.+++-++....++ .=|++..+..+|+...+.+|+-+|++|++++-+
T Consensus 75 v~~g~vyv~t~-~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~~g~l~alda~tG~~~W~ 153 (573)
T d1kb0a2 75 VVDGIMYVSAS-WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWH 153 (573)
T ss_dssp EETTEEEEECG-GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EECCEEEEECC-CCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEecccceeeeccccccceec
Confidence 56899999886 467899999999999988632111 113455567888888888999999999999866
Q ss_pred EEeeeCCE-eeeeeeeeEEECCEEEEEeCCC----CCeEEEEeCCCCcEE
Q 023864 226 DIVRYKGR-EVRNLNELEFIKGEVWANVWQV----WPCIPYAYLQAFGSS 270 (276)
Q Consensus 226 I~V~~~g~-pv~~lNELE~idG~lyANvw~s----~d~I~vIDp~T~~v~ 270 (276)
..+.+... .+....--.+++|.|++..+.. ...|..+|.+||+.+
T Consensus 154 ~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~ 203 (573)
T d1kb0a2 154 QNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERK 203 (573)
T ss_dssp EETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred ccCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccce
Confidence 65543221 1111111236688888765432 147999999998875
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=96.94 E-value=0.022 Score=53.39 Aligned_cols=77 Identities=10% Similarity=0.157 Sum_probs=61.1
Q ss_pred CEEEEEeCCCCcEEEEEecCC-CCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeee--CCEeeeeeeeeEE-EC
Q 023864 170 KTGFIYDQNNLNKLEEFTHQM-KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY--KGREVRNLNELEF-IK 245 (276)
Q Consensus 170 ~~v~V~D~~tlk~i~~~~~~~-~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~--~g~pv~~lNELE~-id 245 (276)
+.+..+|++|.|++-+++.+. ..|=.|+..|..+|+.+.+..|+-+|.+|++++=+..+.. .+.|+. | +|
T Consensus 438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~t------y~~d 511 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMT------FELA 511 (560)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE------EEET
T ss_pred cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEE------EEEC
Confidence 467889999999999998762 1232488899999999999999999999999998888864 344554 3 68
Q ss_pred CEEEEEe
Q 023864 246 GEVWANV 252 (276)
Q Consensus 246 G~lyANv 252 (276)
|+-|+.|
T Consensus 512 Gkqyv~v 518 (560)
T d1kv9a2 512 GRQYVAI 518 (560)
T ss_dssp TEEEEEE
T ss_pred CEEEEEE
Confidence 9877654
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.82 E-value=0.031 Score=45.51 Aligned_cols=147 Identities=10% Similarity=0.090 Sum_probs=88.0
Q ss_pred EEEEEcCCC--CCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEE---------EeeCCEEEEEeCCCCcE--E
Q 023864 117 TLFESTGLY--GRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQV---------TWLQKTGFIYDQNNLNK--L 183 (276)
Q Consensus 117 ~LyeStG~y--g~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~Lyql---------Twk~~~v~V~D~~tlk~--i 183 (276)
.||.-.|.. .-+.+++||+++++-....++|....+-.++..+++||+. ....+.+.+||+.+.+. +
T Consensus 6 ~iyv~GG~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~ 85 (288)
T d1zgka1 6 LIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPC 85 (288)
T ss_dssp CEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEEC
T ss_pred EEEEECCcCCCCCceEEEEECCCCeEEECCCCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhccccccccccc
Confidence 477765532 2356889999999866655677655566778889999997 23356889999876554 3
Q ss_pred EEEecCCCCeeEEeeCCCEEEEECC------CceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEE-----e
Q 023864 184 EEFTHQMKDGWGLATDGKVLFGSDG------SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWAN-----V 252 (276)
Q Consensus 184 ~~~~~~~~EGWGLT~Dg~~L~vSDG------S~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyAN-----v 252 (276)
...+.+ ..+-+.+..+..+|+-.| .+.....|+.+.+.... ......+ ... .+...++.+|+. .
T Consensus 86 ~~~p~~-r~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~r--~~~-~~~~~~~~~~~~GG~~~~ 160 (288)
T d1zgka1 86 APMSVP-RNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLV-APMLTRR--IGV-GVAVLNRLLYAVGGFDGT 160 (288)
T ss_dssp CCCSSC-CBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEEC-CCCSSCC--BSC-EEEEETTEEEEECCBCSS
T ss_pred ccccce-ecceeccccceeeEEecceecccccceeeeeccccCccccc-ccccccc--ccc-eeeeeeecceEecCcccc
Confidence 434443 455566655566766543 55677788888754321 1111111 111 122345555532 2
Q ss_pred CCCCCeEEEEeCCCCcE
Q 023864 253 WQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 253 w~s~d~I~vIDp~T~~v 269 (276)
... +.+.+.|+.+++.
T Consensus 161 ~~~-~~~~~~d~~~~~~ 176 (288)
T d1zgka1 161 NRL-NSAECYYPERNEW 176 (288)
T ss_dssp CBC-CCEEEEETTTTEE
T ss_pred ccc-ceEEEeecccccc
Confidence 234 6688888888653
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.79 E-value=0.03 Score=52.67 Aligned_cols=110 Identities=19% Similarity=0.236 Sum_probs=76.1
Q ss_pred CCEEEEEcCCCCCCeEEEEeCCCCcEEEEe--ecCC------CceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEEEEE
Q 023864 115 NDTLFESTGLYGRSSVRRVALETGKVEAIN--QMEG------SYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (276)
Q Consensus 115 dg~LyeStG~yg~S~I~~iDl~tgkv~~~~--~l~~------~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~ 186 (276)
||+||.++. ...|..+|.+||+++=+. +++. .....|+++.++++|.-+. ++.++.+|++|.+++-+.
T Consensus 68 ~g~vy~~t~---~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~t~-~~~l~alda~tG~~~W~~ 143 (582)
T d1flga_ 68 DGVIYVTAS---YSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL-DASVVALNKNTGKVVWKK 143 (582)
T ss_dssp TTEEEEEET---TTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET-TTEEEEEESSSCCEEEEE
T ss_pred CCEEEEeCC---CCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEeCCceEEecC-CCeEEEecccccceeeee
Confidence 589999876 468999999999987554 2221 2334578899999999876 568999999999999776
Q ss_pred ecC-CCCeeE------EeeC---CCEEEEEC-------CCceEEEEcCCCCcEEEEEEe
Q 023864 187 THQ-MKDGWG------LATD---GKVLFGSD-------GSSMLYQIDPQTLKVIRKDIV 228 (276)
Q Consensus 187 ~~~-~~EGWG------LT~D---g~~L~vSD-------GS~~L~viDp~t~~vi~~I~V 228 (276)
... .+.+.. +..| ++.+++.. ....|.-+|++|++++=+...
T Consensus 144 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~ 202 (582)
T d1flga_ 144 KFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPF 202 (582)
T ss_dssp ECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEES
T ss_pred cccCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEec
Confidence 543 111111 2223 34555532 134699999999999766544
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.75 E-value=0.077 Score=40.99 Aligned_cols=164 Identities=10% Similarity=0.030 Sum_probs=101.7
Q ss_pred eEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEE
Q 023864 93 IQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTG 172 (276)
Q Consensus 93 ~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v 172 (276)
.+.+.++.. ....+..|.+ |++++.+++ .+..|+.||+.++............. . ...............+.+
T Consensus 45 ~~~~~~l~~-H~~~V~~v~~--~~~~l~s~s--~D~~i~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~ 117 (293)
T d1p22a2 45 LECKRILTG-HTGSVLCLQY--DERVIITGS--SDSTVRVWDVNTGEMLNTLIHHCEAV-L-HLRFNNGMMVTCSKDRSI 117 (293)
T ss_dssp CCEEEEECC-CSSCEEEEEC--CSSEEEEEE--TTSCEEEEESSSCCEEEEECCCCSCE-E-EEECCTTEEEEEETTSCE
T ss_pred CcEEEEEec-CCCCEeeeec--ccceeeccc--cccccccccccccccccccccccccc-c-cccccccceeecccccce
Confidence 456777763 2334456666 456666666 67789999999998776665443322 1 122334455666778889
Q ss_pred EEEeCCCCcEEEEEec-C--CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEE
Q 023864 173 FIYDQNNLNKLEEFTH-Q--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVW 249 (276)
Q Consensus 173 ~V~D~~tlk~i~~~~~-~--~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~ly 249 (276)
.++|..+.+....... . ...-..+...+..++...+...|.++|..+.+.+..+.-... .+..+.+.+..+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~-----~v~~~~~~~~~l~ 192 (293)
T d1p22a2 118 AVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR-----GIACLQYRDRLVV 192 (293)
T ss_dssp EEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSS-----CEEEEEEETTEEE
T ss_pred eEeeccccccccccccccccccccccceecccccccccCCCceeeecCCCCcEEEEEccccc-----ccccccCCCCeEE
Confidence 9999887765443321 1 112223455666666666778899999999998877654321 2233445555554
Q ss_pred EEeCCCCCeEEEEeCCCCcEE
Q 023864 250 ANVWQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 250 ANvw~s~d~I~vIDp~T~~v~ 270 (276)
+.. .+ ..|.+.|+++++.+
T Consensus 193 ~~~-~d-g~i~i~d~~~~~~~ 211 (293)
T d1p22a2 193 SGS-SD-NTIRLWDIECGACL 211 (293)
T ss_dssp EEE-TT-SCEEEEETTTCCEE
T ss_pred Eec-CC-CEEEEEecccceee
Confidence 443 55 77888888886543
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=96.75 E-value=0.026 Score=52.96 Aligned_cols=78 Identities=15% Similarity=0.164 Sum_probs=61.1
Q ss_pred CEEEEEeCCCCcEEEEEecCCC-CeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeee--CCEeeeeeeeeEEECC
Q 023864 170 KTGFIYDQNNLNKLEEFTHQMK-DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY--KGREVRNLNELEFIKG 246 (276)
Q Consensus 170 ~~v~V~D~~tlk~i~~~~~~~~-EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~--~g~pv~~lNELE~idG 246 (276)
+.+..+|++|.|++-+++.+.+ -|=.|+.+|..+|+.+.+..|+.+|.+|++++-+..+.. .+.|+.. .+||
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty-----~~~G 531 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTY-----MVDG 531 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE-----EETT
T ss_pred ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEE-----EECC
Confidence 3688899999999999987621 122389999999999999999999999999998887754 4556542 1589
Q ss_pred EEEEEe
Q 023864 247 EVWANV 252 (276)
Q Consensus 247 ~lyANv 252 (276)
+-|+.|
T Consensus 532 kQYv~v 537 (573)
T d1kb0a2 532 RQYVSV 537 (573)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 877655
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=96.73 E-value=0.01 Score=56.61 Aligned_cols=114 Identities=8% Similarity=-0.046 Sum_probs=80.0
Q ss_pred EeCCEEEEEEeeCCEEEEEeC-CCCcEEEEEecCCC-------------CeeEEeeC----CCEEEEECCCceEEEEcCC
Q 023864 157 LLGEKLFQVTWLQKTGFIYDQ-NNLNKLEEFTHQMK-------------DGWGLATD----GKVLFGSDGSSMLYQIDPQ 218 (276)
Q Consensus 157 ~~g~~LyqlTwk~~~v~V~D~-~tlk~i~~~~~~~~-------------EGWGLT~D----g~~L~vSDGS~~L~viDp~ 218 (276)
+.|+.||+.|=..+.++.+|. +|.+++-++..... -|.++-.+ +.++|+.+...+|+-+|.+
T Consensus 60 v~~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~ 139 (596)
T d1w6sa_ 60 VVDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAE 139 (596)
T ss_dssp EETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETT
T ss_pred EECCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccc
Confidence 568999999866788999996 68999999864311 23333222 2368888888999999999
Q ss_pred CCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCC-----CCCeEEEEeCCCCcEEE
Q 023864 219 TLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQ-----VWPCIPYAYLQAFGSSL 271 (276)
Q Consensus 219 t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~-----s~d~I~vIDp~T~~v~l 271 (276)
|++++-+..+.+........---.++++.||+-... + ..|..+|.+||+.+=
T Consensus 140 tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~-G~v~A~Da~TG~~~W 196 (596)
T d1w6sa_ 140 TGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVR-GYLTAYDVKTGEQVW 196 (596)
T ss_dssp TCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCC-CEEEEEETTTCCEEE
T ss_pred cCceeccccccccccccccccCCcEECCeEEEeecccccccc-CceEEEECCCCcEEE
Confidence 999998776653111000111112679999987653 4 689999999998763
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=96.66 E-value=0.12 Score=45.52 Aligned_cols=161 Identities=13% Similarity=0.174 Sum_probs=101.4
Q ss_pred eeEEEEEEecCCCCCceEEEEecCCEEEEEcCC-C--------------CCCeEEEEeCCCCcEEEEeecCCCceEEEEE
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGL-Y--------------GRSSVRRVALETGKVEAINQMEGSYFGEGLT 156 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~-y--------------g~S~I~~iDl~tgkv~~~~~l~~~~FgEGit 156 (276)
+.+-+.++.++.-.+..-+.+.++|.+|.+.-. + ....|..||....++. ...-.|+-||+
T Consensus 137 ~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~----~~~l~~pNGI~ 212 (340)
T d1v04a_ 137 SLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVV----AEGFDFANGIN 212 (340)
T ss_dssp EEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEE----EEEESSEEEEE
T ss_pred eEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEE----cCCCCccceeE
Confidence 456677787777777789999999999987311 1 2345666665543332 33457899999
Q ss_pred Ee--CCEEEEEEeeCCEEEEEeCCCC---cEEEEEecC-CCCeeEEeeCCCEEEEEC--CC-------------ceEE--
Q 023864 157 LL--GEKLFQVTWLQKTGFIYDQNNL---NKLEEFTHQ-MKDGWGLATDGKVLFGSD--GS-------------SMLY-- 213 (276)
Q Consensus 157 ~~--g~~LyqlTwk~~~v~V~D~~tl---k~i~~~~~~-~~EGWGLT~Dg~~L~vSD--GS-------------~~L~-- 213 (276)
+. ++.||+.....+++.+|+.+.- +....+..+ .+++..+.+++..+|+.- .. ..+.
T Consensus 213 ~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~~p~~~~~~~~~~~~~~~s~v~ri 292 (340)
T d1v04a_ 213 ISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRI 292 (340)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEE
T ss_pred ECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEECCcccchhhhcccCCCCceeEEE
Confidence 96 4689999999999999987633 344444444 356666655555666642 11 1122
Q ss_pred -EEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCCCCCeE
Q 023864 214 -QIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQVWPCI 259 (276)
Q Consensus 214 -viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~s~d~I 259 (276)
.++.++++++.. ..++|..+.........+|+||+.-... +.|
T Consensus 293 ~~~~~~~~~v~~~--~~~~G~~~~~~T~a~~~~g~L~iGs~~~-~~l 336 (340)
T d1v04a_ 293 QDILSEEPKVTVV--YAENGTVLQGSTVAAVYKGKLLIGTVFH-KAL 336 (340)
T ss_dssp ECTTSSSCEEEEE--EEECSSSSCSEEEEEEETTEEEEEESSS-CEE
T ss_pred EeccCCCCeEEEE--EeCCCcEeeceEEEEEECCEEEEEeeeC-Cce
Confidence 224555554321 1345666666666667799999776666 544
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.64 E-value=0.0025 Score=60.43 Aligned_cols=112 Identities=13% Similarity=0.038 Sum_probs=75.2
Q ss_pred EEeCCEEEEEEeeCCEEEEEeCCCCcEEEEEecCCC----C-----eeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEE
Q 023864 156 TLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMK----D-----GWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKD 226 (276)
Q Consensus 156 t~~g~~LyqlTwk~~~v~V~D~~tlk~i~~~~~~~~----E-----GWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I 226 (276)
.+.+++||+.+. +++++.+|++|.+++-++....+ . .-|++..++.+|+.+...+|+-+|++|++++=+.
T Consensus 65 iv~~g~vy~~t~-~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~t~~~~l~alda~tG~~~W~~ 143 (582)
T d1flga_ 65 IVSDGVIYVTAS-YSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKK 143 (582)
T ss_dssp EEETTEEEEEET-TTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEE
T ss_pred EEECCEEEEeCC-CCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEeCCceEEecCCCeEEEecccccceeeee
Confidence 457899999986 57899999999999999864311 1 1245566789999888889999999999998766
Q ss_pred EeeeCC--EeeeeeeeeEEEC----CEEEEEe------CCCCCeEEEEeCCCCcEE
Q 023864 227 IVRYKG--REVRNLNELEFIK----GEVWANV------WQVWPCIPYAYLQAFGSS 270 (276)
Q Consensus 227 ~V~~~g--~pv~~lNELE~id----G~lyANv------w~s~d~I~vIDp~T~~v~ 270 (276)
.+.+.+ ....... ....+ +.++++. -.. ..|..+|++||+..
T Consensus 144 ~~~~~~~~~~~~~~p-~~~~~~~~~~~~~i~g~~~~~~~~~-g~v~a~d~~tG~~~ 197 (582)
T d1flga_ 144 KFADHGAGYTMTGAP-TIVKDGKTGKVLLIHGSSGDEFGVV-GRLFARDPDTGEEI 197 (582)
T ss_dssp ECSCGGGTCBCCSCC-EEEECTTTCCEEEEECCBCGGGCCB-CEEEEECTTTCCEE
T ss_pred cccCCCccceeecCc-eEecCCcEeEEEEEeCccccccccc-cceEEecCCCCcEE
Confidence 665421 1111110 11222 2233321 234 57999999998864
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.46 E-value=0.096 Score=41.81 Aligned_cols=149 Identities=7% Similarity=-0.032 Sum_probs=98.4
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCCEEEEEeCCCCcEE
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKL 183 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~~v~V~D~~tlk~i 183 (276)
.....++.+.+++.+ .+.| .+..|+.+|..+. .++.. ...+...++..+.+...++.+.+++..+.+.+
T Consensus 46 ~~~V~~~~~~~~~~~-~s~s--~D~~v~~w~~~~~------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (287)
T d1pgua2 46 SNLIVSLDNSKAQEY-SSIS--WDDTLKVNGITKH------EFGSQ--PKVASANNDGFTAVLTNDDDLLILQSFTGDII 114 (287)
T ss_dssp CSCEEEEECCSTTCC-EEEE--TTTEEEETTEEEE------ECSSC--EEEEEECSSSEEEEEETTSEEEEEETTTCCEE
T ss_pred CCCEEEEEecCCCeE-EEEe--ecccccccccccc------ccccc--eeeeeeccCCceEEEeecccceeeeccceeee
Confidence 455678888865554 4555 5677888876433 23333 23456667767777788889999999999999
Q ss_pred EEEecCCCCeeEEeeCCCEEEEEC-CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCE-EEEEeCCCCCeEE
Q 023864 184 EEFTHQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGE-VWANVWQVWPCIP 260 (276)
Q Consensus 184 ~~~~~~~~EGWGLT~Dg~~L~vSD-GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~-lyANvw~s~d~I~ 260 (276)
.++... ...-.++++++.+.++- ..+.|.++|..+.+....+.....+ .+.-|.+. ||. |.+.. .. ..|.
T Consensus 115 ~~~~~~-~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~g~-~d-g~i~ 187 (287)
T d1pgua2 115 KSVRLN-SPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRA----KPSYISISPSETYIAAGD-VM-GKIL 187 (287)
T ss_dssp EEEECS-SCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSS----CEEEEEECTTSSEEEEEE-TT-SCEE
T ss_pred eecccc-ceeeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCC----ceeEEEeccCcccccccc-cc-cccc
Confidence 999876 46677899998887754 3457899997765544333221111 23344555 444 44443 55 7899
Q ss_pred EEeCCCCcEE
Q 023864 261 YAYLQAFGSS 270 (276)
Q Consensus 261 vIDp~T~~v~ 270 (276)
+.|..+++..
T Consensus 188 i~d~~~~~~~ 197 (287)
T d1pgua2 188 LYDLQSREVK 197 (287)
T ss_dssp EEETTTTEEE
T ss_pred ceeecccccc
Confidence 9999886654
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.25 E-value=0.19 Score=40.52 Aligned_cols=124 Identities=11% Similarity=0.056 Sum_probs=80.5
Q ss_pred EEEecCCCCCceEEEEecCCEEEEEcCCCC-------CCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEE---
Q 023864 97 NEFPHDPRAFTQGLLYAENDTLFESTGLYG-------RSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVT--- 166 (276)
Q Consensus 97 ~~~Phd~~aFTQGL~~~~dg~LyeStG~yg-------~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlT--- 166 (276)
...|.....+ ..+.. ++.||+-.|.++ .+.+.+||+.+.+-...-+++....+-+++..++++|++-
T Consensus 35 ~~~p~~R~~~--~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~~~~~~~i~~~gg~~ 111 (288)
T d1zgka1 35 ADLQVPRSGL--AGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSH 111 (288)
T ss_dssp CCCSSCCBSC--EEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEE
T ss_pred CCCCCcccee--EEEEE-CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceeccccceeeEEeccee
Confidence 3345533333 44444 578998777432 3578899999988766656665555567888999999874
Q ss_pred --eeCCEEEEEeCCCCcEEEEEecC-CCCeeEEeeCCCEEEEECC------CceEEEEcCCCCcEE
Q 023864 167 --WLQKTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDG------SSMLYQIDPQTLKVI 223 (276)
Q Consensus 167 --wk~~~v~V~D~~tlk~i~~~~~~-~~EGWGLT~Dg~~L~vSDG------S~~L~viDp~t~~vi 223 (276)
...+...++|+.+.+....-..+ ...+-+++.....+++--| .+.++.+|+.+.+..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~ 177 (288)
T d1zgka1 112 GCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWR 177 (288)
T ss_dssp TTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEE
T ss_pred cccccceeeeeccccCccccccccccccccceeeeeeecceEecCcccccccceEEEeeccccccc
Confidence 23455777888877654332222 2356666666667776433 467899999987654
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.14 E-value=0.11 Score=40.85 Aligned_cols=129 Identities=9% Similarity=-0.028 Sum_probs=83.2
Q ss_pred eeEEEEEEecCCCCCceEEEEecC-CEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEE-EEEEeCCEEEEEEeeC
Q 023864 92 TIQVVNEFPHDPRAFTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGE-GLTLLGEKLFQVTWLQ 169 (276)
Q Consensus 92 t~~Vv~~~Phd~~aFTQGL~~~~d-g~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgE-Git~~g~~LyqlTwk~ 169 (276)
..++...+.|. .-+..+.|.++ +.++.+++ .+..|..||+.++............... -....++......-.+
T Consensus 46 ~~~~~~~~~h~--~~V~~v~f~~~~~~~l~sg~--~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (342)
T d1yfqa_ 46 NVDLLQSLRYK--HPLLCCNFIDNTDLQIYVGT--VQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD 121 (342)
T ss_dssp EEEEEEEEECS--SCEEEEEEEESSSEEEEEEE--TTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETT
T ss_pred ceEEEEecCCC--CCEEEEEEeCCCCCEEEEcc--cccceeeeecccccccccccccccccccccccccccccccccccc
Confidence 34566677773 34568999876 56666666 6678999999988766655444332222 2333456666777788
Q ss_pred CEEEEEeCCCCcEEEEEe--cC------CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEE
Q 023864 170 KTGFIYDQNNLNKLEEFT--HQ------MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIR 224 (276)
Q Consensus 170 ~~v~V~D~~tlk~i~~~~--~~------~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~ 224 (276)
+.+.++|..+.+...... .. ......+..++..++.......|.++|..+.+...
T Consensus 122 ~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~ 184 (342)
T d1yfqa_ 122 GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN 184 (342)
T ss_dssp SEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCC
T ss_pred cccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccc
Confidence 999999976554433322 11 12233467788888887777889999987765443
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=95.78 E-value=0.26 Score=44.12 Aligned_cols=158 Identities=13% Similarity=0.100 Sum_probs=93.5
Q ss_pred eEEEEecCCE-EEEEcCCC-CCCeEEEEeC--CCCcEEEEeecCC--------CceEEEEEE--e--CCEE-EEEEeeCC
Q 023864 108 QGLLYAENDT-LFESTGLY-GRSSVRRVAL--ETGKVEAINQMEG--------SYFGEGLTL--L--GEKL-FQVTWLQK 170 (276)
Q Consensus 108 QGL~~~~dg~-LyeStG~y-g~S~I~~iDl--~tgkv~~~~~l~~--------~~FgEGit~--~--g~~L-yqlTwk~~ 170 (276)
+|+.+.+++. |.+.+.+- +..+|..|.+ ..+.+ .....+. .++ |+++ . ++.+ ..++.+++
T Consensus 77 ~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l-~~~~~~~~p~~~~~~~vY--Glc~y~~~~~g~~~afv~~k~G 153 (353)
T d1h6la_ 77 YDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL-QSITDPNRPIASAIDEVY--GFSLYHSQKTGKYYAMVTGKEG 153 (353)
T ss_dssp EEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEE-EECSCSSSCEECSSSSCC--CEEEEECTTTCCEEEEEECSSS
T ss_pred cccccCCcceEEEEEeCCcCcceeEEEEEecCccccc-ccccccccccccccCcce--EEEEEecCCCCeEEEEEEcCCc
Confidence 3555543222 33444432 3456665544 44543 3333222 345 5555 2 3444 57788999
Q ss_pred EEEEEeC---CC----CcEEEEEecC-CCCeeEEeeCCCEEEEECCCceEEEEc--CCCCcEEEEEEeeeCCEeeeeeee
Q 023864 171 TGFIYDQ---NN----LNKLEEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQID--PQTLKVIRKDIVRYKGREVRNLNE 240 (276)
Q Consensus 171 ~v~V~D~---~t----lk~i~~~~~~-~~EGWGLT~Dg~~L~vSDGS~~L~viD--p~t~~vi~~I~V~~~g~pv~~lNE 240 (276)
.+..|.. .. .+.+++|+.+ ..||+......++||+++....|+.++ |++......|....++.-..-+.-
T Consensus 154 ~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EG 233 (353)
T d1h6la_ 154 EFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEG 233 (353)
T ss_dssp EEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEE
T ss_pred eEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccc
Confidence 9876643 22 3566778765 469999998889999999888888886 444444333433322222233333
Q ss_pred eEEE-----CCEEEEEeCCCCCeEEEEeCCCCcE
Q 023864 241 LEFI-----KGEVWANVWQVWPCIPYAYLQAFGS 269 (276)
Q Consensus 241 LE~i-----dG~lyANvw~s~d~I~vIDp~T~~v 269 (276)
|... +|+|.|..=.. |...+.|-++...
T Consensus 234 laiy~~~~~~GylivSsQG~-n~f~vydr~~~~~ 266 (353)
T d1h6la_ 234 LTIYYAADGKGYLLASSQGN-SSYAIYERQGQNK 266 (353)
T ss_dssp EEEEECGGGCEEEEEEEGGG-TEEEEEESSTTCC
T ss_pred cEEEEcCCCCeEEEEEcCCC-CeEEEEecCCCcc
Confidence 4333 46899998667 9999999987533
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.40 E-value=0.36 Score=38.18 Aligned_cols=158 Identities=9% Similarity=0.013 Sum_probs=88.5
Q ss_pred CCCceEEEEecCCE-EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCC--EEEEEeCCCC
Q 023864 104 RAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK--TGFIYDQNNL 180 (276)
Q Consensus 104 ~aFTQGL~~~~dg~-LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~--~v~V~D~~tl 180 (276)
........+++||. ++......+...+..+.................+.-.....++.++......+ .++++|.++.
T Consensus 82 ~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~ 161 (269)
T d2hqsa1 82 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG 161 (269)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS
T ss_pred ecccccceecCCCCeeeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccc
Confidence 45556888999874 44444445677777777666655444333333332233334566666665543 6778888776
Q ss_pred cEEEEEecCC-CCeeEEeeCCCEEEEE-C--CCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEE-CCE--EEEEeC
Q 023864 181 NKLEEFTHQM-KDGWGLATDGKVLFGS-D--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGE--VWANVW 253 (276)
Q Consensus 181 k~i~~~~~~~-~EGWGLT~Dg~~L~vS-D--GS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~i-dG~--lyANvw 253 (276)
.......... .....+++||+.++.. + |...+++.|+++........-+.+..| .|. ||+ +|...-
T Consensus 162 ~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p-------~~SPDG~~i~f~s~~ 234 (269)
T d2hqsa1 162 APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETP-------SLAPNGTMVIYSSSQ 234 (269)
T ss_dssp CCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEE-------EECTTSSEEEEEEEE
T ss_pred cceeeecccccccccccccccceeEEEeecCCceeeeEeecccccceEeecCccccce-------EECCCCCEEEEEEcC
Confidence 5433222110 0122367899987663 3 577899999887765322221222222 233 664 465443
Q ss_pred CCCCeEEEEeCCCCc
Q 023864 254 QVWPCIPYAYLQAFG 268 (276)
Q Consensus 254 ~s~d~I~vIDp~T~~ 268 (276)
.....|.++|.+.+.
T Consensus 235 ~~~~~l~~~~~dg~~ 249 (269)
T d2hqsa1 235 GMGSVLNLVSTDGRF 249 (269)
T ss_dssp TTEEEEEEEETTSCC
T ss_pred CCCcEEEEEECCCCC
Confidence 332578889988755
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.32 E-value=0.18 Score=45.81 Aligned_cols=34 Identities=12% Similarity=0.330 Sum_probs=27.4
Q ss_pred eEEEEEEecCCCCCceEEEEecCCEEEEEcCCCC
Q 023864 93 IQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYG 126 (276)
Q Consensus 93 ~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg 126 (276)
..++...|....-+.-+|.|.+||+||.+.|.-+
T Consensus 132 ~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd~~ 165 (450)
T d1crua_ 132 VDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQG 165 (450)
T ss_dssp EEEEEEECCCSSCCEEEEEECTTSCEEEEECCTT
T ss_pred EEEeecccccccccccceeEcCCCCEEEEecCCC
Confidence 3466777776677889999999999999999543
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=94.73 E-value=0.14 Score=43.10 Aligned_cols=118 Identities=11% Similarity=0.119 Sum_probs=75.2
Q ss_pred CCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe-CCEEEEEEee------CCEEEEEe
Q 023864 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWL------QKTGFIYD 176 (276)
Q Consensus 104 ~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~-g~~LyqlTwk------~~~v~V~D 176 (276)
..|..|.++.+||++|...| .+.+.+.+||+++++-...-.++....+-+.++. ++++|+.--. -+.+.+||
T Consensus 75 ~~~~~~~~~~~~g~i~v~Gg-~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd 153 (387)
T d1k3ia3 75 DMFCPGISMDGNGQIVVTGG-NDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYS 153 (387)
T ss_dssp CCSSCEEEECTTSCEEEECS-SSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEE
T ss_pred ccceeEEEEecCCcEEEeec-CCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeec
Confidence 45667888989999998655 5778999999999987665556644333455554 6788888532 25789999
Q ss_pred CCCCcEEEEEe---cC-------------CCCeeEEeeCCCEEEEECC-CceEEEEcCCCCcEE
Q 023864 177 QNNLNKLEEFT---HQ-------------MKDGWGLATDGKVLFGSDG-SSMLYQIDPQTLKVI 223 (276)
Q Consensus 177 ~~tlk~i~~~~---~~-------------~~EGWGLT~Dg~~L~vSDG-S~~L~viDp~t~~vi 223 (276)
+.+.+-.. ++ .+ ....+.+.-.+..+++..| +..+++.|+.+....
T Consensus 154 ~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~ 216 (387)
T d1k3ia3 154 PSSKTWTS-LPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK 216 (387)
T ss_dssp TTTTEEEE-ETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE
T ss_pred CCCCceee-cCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEe
Confidence 98876422 21 00 0112222222233444454 678888898887654
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=94.67 E-value=0.47 Score=42.35 Aligned_cols=118 Identities=17% Similarity=0.218 Sum_probs=77.4
Q ss_pred eEEEEe--cC-CEEEE-EcCCCCCCeEEEEeC---CCC----cEEEEeecCCCceEEEEEEeC--CEEEEEEeeCCEEEE
Q 023864 108 QGLLYA--EN-DTLFE-STGLYGRSSVRRVAL---ETG----KVEAINQMEGSYFGEGLTLLG--EKLFQVTWLQKTGFI 174 (276)
Q Consensus 108 QGL~~~--~d-g~Lye-StG~yg~S~I~~iDl---~tg----kv~~~~~l~~~~FgEGit~~g--~~LyqlTwk~~~v~V 174 (276)
.|+++. +. |.+|. .++ ....+..|.+ .++ +.+++..++.. .|||.+++ ++||+.-. +.-+..
T Consensus 131 YGlc~y~~~~~g~~~afv~~--k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q--~EGCVvDde~~~LyisEE-~~Giw~ 205 (353)
T d1h6la_ 131 YGFSLYHSQKTGKYYAMVTG--KEGEFEQYELNADKNGYISGKKVRAFKMNSQ--TEGMAADDEYGSLYIAEE-DEAIWK 205 (353)
T ss_dssp CCEEEEECTTTCCEEEEEEC--SSSEEEEEEEEECTTSSEEEEEEEEEECSSC--EEEEEEETTTTEEEEEET-TTEEEE
T ss_pred eEEEEEecCCCCeEEEEEEc--CCceEEEEEEEcCCCCceeeEeeeccCCCCc--cceEEEeCCCCcEEEecC-ccceEE
Confidence 499883 33 55553 344 3445666644 344 34556677776 89999996 69999865 456677
Q ss_pred EeCC--CC---cEEEEEe----cCCCCeeEEe--eCCC-EEEEEC-CCceEEEEcCCC-CcEEEEEEeee
Q 023864 175 YDQN--NL---NKLEEFT----HQMKDGWGLA--TDGK-VLFGSD-GSSMLYQIDPQT-LKVIRKDIVRY 230 (276)
Q Consensus 175 ~D~~--tl---k~i~~~~----~~~~EGWGLT--~Dg~-~L~vSD-GS~~L~viDp~t-~~vi~~I~V~~ 230 (276)
|+.+ .. +.+.... ..-+||.+|- .|++ +|++|+ |.++..++|.++ ++.+.+..+.+
T Consensus 206 ~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~i~~ 275 (353)
T d1h6la_ 206 FSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQITD 275 (353)
T ss_dssp EESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEECC
T ss_pred EEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEEEec
Confidence 7753 22 2232221 1126888864 4555 899998 899999999887 68888877653
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=94.51 E-value=0.21 Score=39.46 Aligned_cols=108 Identities=18% Similarity=0.267 Sum_probs=65.8
Q ss_pred EEEEecC--CE--EEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCC-----EEEEEeCCC
Q 023864 109 GLLYAEN--DT--LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK-----TGFIYDQNN 179 (276)
Q Consensus 109 GL~~~~d--g~--LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~-----~v~V~D~~t 179 (276)
|+.++|| |. +|.+.| .|..+|+++|+..+-..-+...+.--+..+|++|+-+.+.++ .++++|..+
T Consensus 3 ~~~~sPdi~G~~v~f~~~~-----dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~ 77 (281)
T d1k32a2 3 NLLLNPDIHGDRIIFVCCD-----DLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN 77 (281)
T ss_dssp CCCEEEEEETTEEEEEETT-----EEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT
T ss_pred CcccCCCCCCCEEEEEeCC-----cEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecC
Confidence 4556677 53 566544 599999999987554343344343334445788887777653 589999888
Q ss_pred CcEEEEEec------C---CCCeeEEeeCCCEEEEECC------CceEEEEcCCCCcE
Q 023864 180 LNKLEEFTH------Q---MKDGWGLATDGKVLFGSDG------SSMLYQIDPQTLKV 222 (276)
Q Consensus 180 lk~i~~~~~------~---~~EGWGLT~Dg~~L~vSDG------S~~L~viDp~t~~v 222 (276)
.+... +.. . .....+.++||+.|+.+.. ...+..+|.++.+.
T Consensus 78 g~~~~-lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (281)
T d1k32a2 78 GEIKR-ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINF 134 (281)
T ss_dssp TEEEE-CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEE
T ss_pred CceEE-eeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCcee
Confidence 87643 211 0 1123347889999888652 22455666555443
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.10 E-value=0.17 Score=44.22 Aligned_cols=109 Identities=13% Similarity=0.068 Sum_probs=65.8
Q ss_pred EEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEe---ecC---CCceEEEEEEeCCEEEEEEe--------eCCEEEE
Q 023864 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAIN---QME---GSYFGEGLTLLGEKLFQVTW--------LQKTGFI 174 (276)
Q Consensus 109 GL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~---~l~---~~~FgEGit~~g~~LyqlTw--------k~~~v~V 174 (276)
.+.+.+|+.++.. +++.|.++|+++|+..... .+. ......-+..++.+|....- ..+.+++
T Consensus 21 ~~~W~~d~~~~~~----~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l 96 (470)
T d2bgra1 21 SLRWISDHEYLYK----QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI 96 (470)
T ss_dssp CCEECSSSEEEEE----SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred CCEeCCCCEEEEE----cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEE
Confidence 5677778774433 3357999999999865432 222 22333233334555443321 1357789
Q ss_pred EeCCCCcEEEEEe-cC-CCCeeEEeeCCCEE-EEECCCceEEEEcCCCCcEEE
Q 023864 175 YDQNNLNKLEEFT-HQ-MKDGWGLATDGKVL-FGSDGSSMLYQIDPQTLKVIR 224 (276)
Q Consensus 175 ~D~~tlk~i~~~~-~~-~~EGWGLT~Dg~~L-~vSDGS~~L~viDp~t~~vi~ 224 (276)
||.++.+.. ++. .+ .-.-..++|||+.+ |++| +.|+++|..+++.++
T Consensus 97 ~d~~~~~~~-~l~~~~~~~~~~~~SPDG~~ia~~~~--~~l~~~~~~~g~~~~ 146 (470)
T d2bgra1 97 YDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVWN--NDIYVKIEPNLPSYR 146 (470)
T ss_dssp EETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEET--TEEEEESSTTSCCEE
T ss_pred EECCCCccc-ccccCCccccccccccCcceeeEeec--ccceEEECCCCceee
Confidence 999987753 332 22 11223478999865 5565 579999999987754
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.83 E-value=0.42 Score=37.72 Aligned_cols=112 Identities=14% Similarity=0.077 Sum_probs=61.7
Q ss_pred EEecCC-EEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCC--EEEEEeCCCCcEEEEEe
Q 023864 111 LYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK--TGFIYDQNNLNKLEEFT 187 (276)
Q Consensus 111 ~~~~dg-~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~--~v~V~D~~tlk~i~~~~ 187 (276)
.+..++ .++......|...|..++++++...............-+..+++.++.....++ .++++|..+....-+..
T Consensus 133 ~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 212 (269)
T d2hqsa1 133 TWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSS 212 (269)
T ss_dssp EECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCC
T ss_pred ccccccccceecccccCCceEeeeecccccceeeecccccccccccccccceeEEEeecCCceeeeEeecccccceEeec
Confidence 344443 344444445778899999998865443332222222222334556665555543 45556666554322211
Q ss_pred cCCCCeeEEeeCCCEE-EEEC--CCceEEEEcCCCCcE
Q 023864 188 HQMKDGWGLATDGKVL-FGSD--GSSMLYQIDPQTLKV 222 (276)
Q Consensus 188 ~~~~EGWGLT~Dg~~L-~vSD--GS~~L~viDp~t~~v 222 (276)
...-..-.++|||++| |.++ |...|+++|.++.+.
T Consensus 213 ~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~ 250 (269)
T d2hqsa1 213 TFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK 250 (269)
T ss_dssp SSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred CccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence 1100111378999987 5565 577899999887654
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.27 E-value=0.51 Score=41.62 Aligned_cols=114 Identities=15% Similarity=0.187 Sum_probs=67.1
Q ss_pred CCCceEEEEecCCE--EE-EEcCCCCCCeEEEEeCCCCcEEEEeecCCCceEEEEEEe--CCEEEEEE------------
Q 023864 104 RAFTQGLLYAENDT--LF-ESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVT------------ 166 (276)
Q Consensus 104 ~aFTQGL~~~~dg~--Ly-eStG~yg~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~--g~~LyqlT------------ 166 (276)
.-+..|+.++||++ +| ++.|.-+...|+++|++||+.+... ++..-| -+++.. ++.+|-..
T Consensus 124 ~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~-i~~~~~-~~~~W~~D~~~~~Y~~~~~~~~~~~~~~ 201 (430)
T d1qfma1 124 TVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-LERVKF-SCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (430)
T ss_dssp CEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-EEEECS-CCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred cceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccc-cccccc-cceEEcCCCCEEEEEEeccccCcccccc
Confidence 33456888999875 22 5667556788999999999976533 332111 235554 44565544
Q ss_pred ---eeCCEEEEEeCCCCcEEEEEecC--CCC----eeEEeeCCCEEEE--ECC---CceEEEEcCCC
Q 023864 167 ---WLQKTGFIYDQNNLNKLEEFTHQ--MKD----GWGLATDGKVLFG--SDG---SSMLYQIDPQT 219 (276)
Q Consensus 167 ---wk~~~v~V~D~~tlk~i~~~~~~--~~E----GWGLT~Dg~~L~v--SDG---S~~L~viDp~t 219 (276)
++..+++.....+-..-...-++ -.. +..++.||++|++ +.+ .+.++.+|..+
T Consensus 202 ~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~ 268 (430)
T d1qfma1 202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQ 268 (430)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred cccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCC
Confidence 34457777776655332222121 111 3447889999875 333 45788888443
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=92.19 E-value=0.54 Score=42.51 Aligned_cols=69 Identities=16% Similarity=0.291 Sum_probs=44.8
Q ss_pred eeeEEEEEEecCCCCCceEEEEecCCEEEEEcCCCCCCeEEEEeCCCCcEEEEeecCCCc---eE----EEEEEeC----
Q 023864 91 YTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSY---FG----EGLTLLG---- 159 (276)
Q Consensus 91 ~t~~Vv~~~Phd~~aFTQGL~~~~dg~LyeStG~yg~S~I~~iDl~tgkv~~~~~l~~~~---Fg----EGit~~g---- 159 (276)
++.+++.+= . ..++ +|+|.|||+||++.= +...|++++.++++......++... -+ -||+++.
T Consensus 17 f~~~~ia~~-L-~~P~--~la~~pdg~llVter--~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~ 90 (450)
T d1crua_ 17 FDKKVILSN-L-NKPH--ALLWGPDNQIWLTER--ATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKN 90 (450)
T ss_dssp SCEEEEECC-C-SSEE--EEEECTTSCEEEEET--TTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTT
T ss_pred cEEEEEECC-C-CCce--EEEEeCCCeEEEEEe--cCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCcc
Confidence 556666541 1 2455 999999999998632 3458999999999876655555321 12 2677763
Q ss_pred -CEEEEE
Q 023864 160 -EKLFQV 165 (276)
Q Consensus 160 -~~Lyql 165 (276)
+.+|+.
T Consensus 91 n~~iYvs 97 (450)
T d1crua_ 91 NPYIYIS 97 (450)
T ss_dssp SCEEEEE
T ss_pred CCEEEEE
Confidence 566664
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=91.97 E-value=0.8 Score=38.21 Aligned_cols=128 Identities=7% Similarity=-0.063 Sum_probs=73.7
Q ss_pred CCcEEEEeecCCCceEEEEEEeCCEEEEEEee------C-----CEEEEEeCCCCcE--EEEEecCC---CCeeEEeeCC
Q 023864 137 TGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL------Q-----KTGFIYDQNNLNK--LEEFTHQM---KDGWGLATDG 200 (276)
Q Consensus 137 tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk------~-----~~v~V~D~~tlk~--i~~~~~~~---~EGWGLT~Dg 200 (276)
.|+=....++|.......+...++++|+.-=. + ..+.+||+.+-+- +...+.+. .-|-.+..||
T Consensus 8 ~g~W~~~~~~p~~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g 87 (387)
T d1k3ia3 8 LGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG 87 (387)
T ss_dssp SCEEEEEEECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS
T ss_pred CCccCCcCCCCccccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCC
Confidence 44444556677554445555567899887331 1 1478999987654 33444331 1244566788
Q ss_pred CEEEEE-CCCceEEEEcCCCCcEEEEEEeeeCCEeeeeeeeeEEECCEEEEEeCC------CCCeEEEEeCCCCc
Q 023864 201 KVLFGS-DGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQ------VWPCIPYAYLQAFG 268 (276)
Q Consensus 201 ~~L~vS-DGS~~L~viDp~t~~vi~~I~V~~~g~pv~~lNELE~idG~lyANvw~------s~d~I~vIDp~T~~ 268 (276)
+.+++. ++++.+.++||++.+-... .-....+..+.. ....||+||+--.. . +.+-+.||.+++
T Consensus 88 ~i~v~Gg~~~~~~~~yd~~~~~w~~~-~~~~~~r~~~~~--~~~~dG~v~v~GG~~~~~~~~-~~v~~yd~~~~~ 158 (387)
T d1k3ia3 88 QIVVTGGNDAKKTSLYDSSSDSWIPG-PDMQVARGYQSS--ATMSDGRVFTIGGSWSGGVFE-KNGEVYSPSSKT 158 (387)
T ss_dssp CEEEECSSSTTCEEEEEGGGTEEEEC-CCCSSCCSSCEE--EECTTSCEEEECCCCCSSSCC-CCEEEEETTTTE
T ss_pred cEEEeecCCCcceeEecCccCccccc-ccccccccccce--eeecCCceeeecccccccccc-ceeeeecCCCCc
Confidence 877774 4678999999999876431 111111111110 11237887765432 3 468889998854
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=91.48 E-value=1.6 Score=33.88 Aligned_cols=73 Identities=21% Similarity=0.227 Sum_probs=45.9
Q ss_pred EEEeCCEEEEEEee--CCEEEEEeCCCCcEEEEEecC-CCCeeEEeeCCCEEEEECCCceEEEEcCCCCcEEEEEEeee
Q 023864 155 LTLLGEKLFQVTWL--QKTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY 230 (276)
Q Consensus 155 it~~g~~LyqlTwk--~~~v~V~D~~tlk~i~~~~~~-~~EGWGLT~Dg~~L~vSDGS~~L~viDp~t~~vi~~I~V~~ 230 (276)
....++.++...-. ...++++|+++.+.. .+... ..+.-.+++||+.|+.+.+ ..|+++|+++.+.. +|.+++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~lt~~~~~~~~~~SpDG~~I~f~~~-~~l~~~d~~~g~~~-~i~~~~ 272 (281)
T d1k32a2 197 PVIVGHRIYFITDIDGFGQIYSTDLDGKDLR-KHTSFTDYYPRHLNTDGRRILFSKG-GSIYIFNPDTEKIE-KIEIGD 272 (281)
T ss_dssp EEEETTEEEEEECTTSSCEEEEEETTSCSCE-ECCCCCSSCEEEEEESSSCEEEEET-TEEEEECTTTCCEE-ECCCCC
T ss_pred eeeeccccceecccccccceEEEeCCCCceE-EeecCCCcccccCcCCCCEEEEEeC-CEEEEEECCCCCEE-EeccCC
Confidence 34456666655543 356889998877643 33221 1122357899998877553 36999999988764 555553
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=90.80 E-value=1.3 Score=38.28 Aligned_cols=102 Identities=9% Similarity=-0.020 Sum_probs=65.9
Q ss_pred CCCeEEEEeCCCCcEEEEeecCCCceEEEEEEeCCEEEEEEeeCC------EEEEEeCCCCcEEEEEecC---CCCee--
Q 023864 126 GRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK------TGFIYDQNNLNKLEEFTHQ---MKDGW-- 194 (276)
Q Consensus 126 g~S~I~~iDl~tgkv~~~~~l~~~~FgEGit~~g~~LyqlTwk~~------~v~V~D~~tlk~i~~~~~~---~~EGW-- 194 (276)
|...|..++.+.++... ..-+...+-.-+..+++.+|.+...++ .++.++....+..+.+... ...|+
T Consensus 342 g~~~ly~~~~~g~~~~~-lt~g~~~v~~~~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s 420 (470)
T d2bgra1 342 GYRHICYFQIDKKDCTF-ITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYS 420 (470)
T ss_dssp SCEEEEEEETTCSCCEE-SCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEE
T ss_pred cCceeEEEeccCCceee-eccCCeeEEEEEEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEE
Confidence 66678888987766533 322333333335667889988776443 4888888776665555321 12333
Q ss_pred -EEeeCCCEEEEEC-C--CceEEEEcCCCCcEEEEEEe
Q 023864 195 -GLATDGKVLFGSD-G--SSMLYQIDPQTLKVIRKDIV 228 (276)
Q Consensus 195 -GLT~Dg~~L~vSD-G--S~~L~viDp~t~~vi~~I~V 228 (276)
.++|||++++.+- | ...+.+++..+++.++.++-
T Consensus 421 ~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v~~le~ 458 (470)
T d2bgra1 421 VSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLED 458 (470)
T ss_dssp EEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEEC
T ss_pred EEECCCCCEEEEEecCCCCCeEEEEECCCCCEEEEEec
Confidence 4889999877633 5 44588899999998887753
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.94 E-value=5 Score=35.58 Aligned_cols=74 Identities=9% Similarity=0.127 Sum_probs=40.4
Q ss_pred EEEEecCCE-EEEEcC---CC---CCCeEEEEeCCCCcEEEEeecC--CCce-EEEEEEeCCEEEEEEeeCCEEEEEeCC
Q 023864 109 GLLYAENDT-LFESTG---LY---GRSSVRRVALETGKVEAINQME--GSYF-GEGLTLLGEKLFQVTWLQKTGFIYDQN 178 (276)
Q Consensus 109 GL~~~~dg~-LyeStG---~y---g~S~I~~iDl~tgkv~~~~~l~--~~~F-gEGit~~g~~LyqlTwk~~~v~V~D~~ 178 (276)
...++||++ ++.++. .| ....+..+|+++++...-.+.. .... -.....+|++|.-+ +++.++++|..
T Consensus 65 ~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv--~~~nl~~~~~~ 142 (465)
T d1xfda1 65 RYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFI--FENNIYYCAHV 142 (465)
T ss_dssp EEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEE--ETTEEEEESSS
T ss_pred eeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEE--ecceEEEEecC
Confidence 557888875 443332 11 2357888999999864432221 1100 01123345555333 47888888877
Q ss_pred CCcEEE
Q 023864 179 NLNKLE 184 (276)
Q Consensus 179 tlk~i~ 184 (276)
+.+.++
T Consensus 143 ~~~~~~ 148 (465)
T d1xfda1 143 GKQAIR 148 (465)
T ss_dssp SSCCEE
T ss_pred CCceEE
Confidence 665543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.58 E-value=9.6 Score=33.62 Aligned_cols=87 Identities=13% Similarity=0.159 Sum_probs=50.0
Q ss_pred eEEEEeCCCCcEEEEeecC-----CCceEEEEEEe-CCEEEEEEeeC----CEEEEEeCCCCcEEEEEecCCCCee----
Q 023864 129 SVRRVALETGKVEAINQME-----GSYFGEGLTLL-GEKLFQVTWLQ----KTGFIYDQNNLNKLEEFTHQMKDGW---- 194 (276)
Q Consensus 129 ~I~~iDl~tgkv~~~~~l~-----~~~FgEGit~~-g~~LyqlTwk~----~~v~V~D~~tlk~i~~~~~~~~EGW---- 194 (276)
++.++|+++++......-+ ..++.--++.. ++++++....- ..+.++|+.+.+....+... .+||
T Consensus 229 ~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~-~~~wv~~~ 307 (465)
T d1xfda1 229 SLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE-SEAWLHRQ 307 (465)
T ss_dssp EEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE-CSSCCCCC
T ss_pred eEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEc-CCceEecc
Confidence 5777888777543322111 22333345554 45655443321 36888999998876554422 3555
Q ss_pred ----EEeeCCCE---EEEEC--CCceEEEEc
Q 023864 195 ----GLATDGKV---LFGSD--GSSMLYQID 216 (276)
Q Consensus 195 ----GLT~Dg~~---L~vSD--GS~~L~viD 216 (276)
.+.+||+. ++.++ |-+.++.++
T Consensus 308 ~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~ 338 (465)
T d1xfda1 308 NEEPVFSKDGRKFFFIRAIPQGGRGKFYHIT 338 (465)
T ss_dssp CCCCEECTTSCSEEEEEEECCSSSSCEEEEE
T ss_pred CCceeEccCCCeeEEEEeeeecccCceEEEE
Confidence 47789984 34454 677888775
|