Citrus Sinensis ID: 023875

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270------

MSQLFYTLPKRLTVSPSPPLLHFNYRSSRTRLVCSKMPTESSPSPLTHSITIPSQLSQPVHVVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTAIALYEMASKEELLPSRT

ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccHHHHHHHHHcccHHHHHHHHHHccccccccccEEEEEEEEEEEccccEEEEEEEEEEEEEccccccccccccccEEEEccEEcccccccHHHHHHHHHHHHHccccccccccHHHHccccccccccccccccccccEEEEEEEEcccHHHHHHHHccccccccccccEEEEEEcHHHHHHHccHHHHHHHHHHHHHHHccccccccc

cccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccHHHHHHHHccHHHHHHHHHHcHcccccccccEEEEEEEEEEEEcccccEEEEEEEEEEEccccccEEEEccccEEEEEcccccccccccHHHHHHHHHHHHHccEEcHHHHHHHHHHHcccccccccccccccccEEEEEEEEccccHHHHHHHccccccccccccEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc

msqlfytlpkrltvspsppllhfnyrssrtrlvcskmptesspsplthsitipsqlsqpvhvvaapglsesdfrCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFKADIFcketgqkvrvptgrvilelpagmldddkgdfVGTAVREVEEETGIQLKLEDMIDLtaflypstgckffpsaggcdeEISLFLYRGRVDKEIIMQLQgketglrdhgelikvrvvpyrelwrttpdAKVLTAIALYEMAskeellpsrt

msqlfytlpkrltvspsppllhfnyrssRTRLVCSKMPTESSPSPLTHSITIPSQLSQPVHVVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFKADIFCketgqkvrvptgrVILElpagmldddkgDFVGTAVREVEeetgiqlklEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLqgketglrdhgelikvrvvpyrelwrttpdakVLTAIALYemaskeellpsrt

*****YT************LLHFNY**********************************VHVVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTAIALYEM***********

*******LPKRLTVSPSPPLLH*************************************V*VVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEII*******TGLRDHGELIKVRVVPYRELWRTTPDAKVLTAIALYEMAS*********

MSQLFYTLPKRLTVSPSPPLLHFNYRSSRTRLV**************HSITIPSQLSQPVHVVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTAIALYEMASK********

*SQLFYTLPKRLTVSPSPPLLHFNYRS**TRL*C*********SPLTHSITIPSQLSQPVHVVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFKADIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTAIALYEMASKE*******

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		276	2.2.26 [Sep-21-2011]
Q9SZ63		309	Nudix hydrolase 14, chlor	yes	no	0.963	0.860	0.619	3e-96

>sp\|Q9SZ63\|NUD14_ARATH Nudix hydrolase 14, chloroplastic OS=Arabidopsis thaliana GN=NUDT14 PE=1 SV=2	Back alignment and function desciption

 Score =  351 bits (901), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 189/305 (61%), Positives = 223/305 (73%), Gaps = 39/305 (12%)

Query: 5   FYTLPKRLTVSPS---PPLLHFNYRSSRTRLVCSKMPTESSPSPLTHSITIPSQLSQPVH 61
           F  LP RL   PS   P  LH ++  ++  L C KM + SS   LT SIT+PSQ ++PV 
Sbjct: 4   FTLLPSRLLAFPSRALPRRLHHHH--AKLILRC-KMSSSSSS--LTQSITLPSQPNEPVL 58

Query: 62  VVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFL 121
           V A  G+S SDFR A++S+LF+ WL+NL+SE+GILA+G M LKQVLIQGVDMFGKRIGFL
Sbjct: 59  VSATAGISSSDFRDAIDSSLFRNWLRNLESESGILADGSMTLKQVLIQGVDMFGKRIGFL 118

Query: 122 KFKADIFCKETGQKV-------------------------------RVPTGRVILELPAG 150
           KFKADIF KETGQKV                               RVPTG+++LELPAG
Sbjct: 119 KFKADIFDKETGQKVPGIVFARGPAVAVLILLESDGETYAVLTEQVRVPTGKIVLELPAG 178

Query: 151 MLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFL 210
           MLDDDKGDFVGTAVREVEEE GI+LK EDM+DLTAFL PSTG + FPS GGCDEE+S+FL
Sbjct: 179 MLDDDKGDFVGTAVREVEEEIGIKLKKEDMVDLTAFLDPSTGYRIFPSPGGCDEEMSVFL 238

Query: 211 YRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTAIALYEMASKEE 270
           YRG+V+KE I QLQGKETGLR+HGE IKVR++PYRELWR T DAKVL +I LYEMA +E 
Sbjct: 239 YRGQVEKETIRQLQGKETGLREHGEFIKVRLIPYRELWRKTADAKVLMSIGLYEMAQREG 298

Query: 271 LLPSR 275
           L+ S+
Sbjct: 299 LVSSQ 303

Mediates the hydrolysis of some nucleoside diphosphate derivatives. Can use ADP-glucose, ADP-mannose and ADP-ribose as substrates. Regulates the intracellular ADP-glucose levels linked to starch biosynthesis.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: 2EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		276
255537175		305	ADP-ribose pyrophosphatase, putative [Ri	0.971	0.878	0.629	1e-99
356513721		304	PREDICTED: nudix hydrolase 14, chloropla	0.920	0.835	0.644	6e-99
224071638		270	predicted protein [Populus trichocarpa]	0.865	0.885	0.682	3e-98
297813707		303	hypothetical protein ARALYDRAFT_490017 [	0.967	0.881	0.629	8e-98
356514188		270	PREDICTED: nudix hydrolase 14, chloropla	0.855	0.874	0.680	3e-97
18413722		309	nudix hydrolase 14 [Arabidopsis thaliana	0.963	0.860	0.619	2e-94
110622992		307	ADP-sugar diphosphatase [Solanum tuberos	0.949	0.853	0.625	8e-94
225426698		306	PREDICTED: nudix hydrolase 14, chloropla	0.931	0.839	0.616	3e-92
297742638		269	unnamed protein product [Vitis vinifera]	0.826	0.847	0.652	5e-91
449459650		310	PREDICTED: nudix hydrolase 14, chloropla	0.826	0.735	0.660	3e-90

>gi\|255537175\|ref\|XP_002509654.1\| ADP-ribose pyrophosphatase, putative [Ricinus communis] gi\|223549553\|gb\|EEF51041.1\| ADP-ribose pyrophosphatase, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  369 bits (946), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 192/305 (62%), Positives = 223/305 (73%), Gaps = 37/305 (12%)

Query: 5   FYTLPKRLTVSPSPPLLHFNYRSSRTRLVCSKMPTESSPSPLTHSITIPSQLSQPVHVVA 64
             T PKR+ ++P   +LH   ++ R+R   S   +  SP PLT S+T+P+Q +QPV ++A
Sbjct: 3   LLTAPKRIVLAPFQYMLH---QTRRSRTPFSVKMSADSPQPLTQSLTLPTQPNQPVQIIA 59

Query: 65  APGLSESDFR---CAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFL 121
           APG+S SD R    A++S+LFKQWLKNLQSETGILA     LK+VL+QGVDMFGKRIGFL
Sbjct: 60  APGVSGSDLRPCRSAIDSSLFKQWLKNLQSETGILATPSFSLKRVLVQGVDMFGKRIGFL 119

Query: 122 KFKADIFCKETGQK-------------------------------VRVPTGRVILELPAG 150
           KFKADI  +ETGQK                               VRVPTGR++LELPAG
Sbjct: 120 KFKADIIDQETGQKVPGIVFARGPAVTVLILLDAEGETYAVLTEQVRVPTGRLVLELPAG 179

Query: 151 MLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFL 210
           MLDDDKGDFVGTAVREVEEETGI+L LEDM+DLT+FL PSTGC+  PS GGCDEEIS+FL
Sbjct: 180 MLDDDKGDFVGTAVREVEEETGIRLNLEDMVDLTSFLDPSTGCRIIPSPGGCDEEISVFL 239

Query: 211 YRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTAIALYEMASKEE 270
           YRG VDKEII QLQGKETGL DHGELIK+ VVPYR+LWR T DAK L AIALYEMA KE 
Sbjct: 240 YRGCVDKEIITQLQGKETGLHDHGELIKLHVVPYRKLWRMTADAKALMAIALYEMAKKEG 299

Query: 271 LLPSR 275
           LLPS+
Sbjct: 300 LLPSK 304

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356513721\|ref\|XP_003525559.1\| PREDICTED: nudix hydrolase 14, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

>gi\|224071638\|ref\|XP_002303547.1\| predicted protein [Populus trichocarpa] gi\|222840979\|gb\|EEE78526.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|297813707\|ref\|XP_002874737.1\| hypothetical protein ARALYDRAFT_490017 [Arabidopsis lyrata subsp. lyrata] gi\|297320574\|gb\|EFH50996.1\| hypothetical protein ARALYDRAFT_490017 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|356514188\|ref\|XP_003525788.1\| PREDICTED: nudix hydrolase 14, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

>gi|18413722|ref|NP_567384.1| nudix hydrolase 14 [Arabidopsis thaliana] gi|68565950|sp|Q9SZ63.2|NUD14_ARATH RecName: Full=Nudix hydrolase 14, chloroplastic; Short=AtNUDT14; AltName: Full=ADP-sugar diphosphatase; Short=AtASPP; Flags: Precursor gi|15450341|gb|AAK96464.1| AT4g11980/F16J13_50 [Arabidopsis thaliana] gi|24797050|gb|AAN64537.1| At4g11980/F16J13_50 [Arabidopsis thaliana] gi|67966275|emb|CAG38620.1| ADP-sugar diphosphatase [Arabidopsis thaliana] gi|332657679|gb|AEE83079.1| nudix hydrolase 14 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|110622992\|emb\|CAJ55406.1\| ADP-sugar diphosphatase [Solanum tuberosum]	Back alignment and taxonomy information

>gi\|225426698\|ref\|XP_002281806.1\| PREDICTED: nudix hydrolase 14, chloroplastic [Vitis vinifera] gi\|147766435\|emb\|CAN76052.1\| hypothetical protein VITISV_016365 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297742638\|emb\|CBI34787.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449459650\|ref\|XP_004147559.1\| PREDICTED: nudix hydrolase 14, chloroplastic-like [Cucumis sativus] gi\|449513387\|ref\|XP_004164313.1\| PREDICTED: nudix hydrolase 14, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		276
TAIR\|locus:2118061		309	NUDX14 "nudix hydrolase homolo	0.514	0.459	0.753	2.9e-55
DICTYBASE\|DDB_G0271376		253	DDB_G0271376 [Dictyostelium di	0.514	0.561	0.423	1.7e-34
DICTYBASE\|DDB_G0282603		199	DDB_G0282603 "NUDIX hydrolase	0.184	0.256	0.415	0.00041

TAIR\|locus:2118061 NUDX14 "nudix hydrolase homolog 14" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
 Identities = 107/142 (75%), Positives = 126/142 (88%)

Query:   134 QKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGC 193
             ++VRVPTG+++LELPAGMLDDDKGDFVGTAVREVEEE GI+LK EDM+DLTAFL PSTG 
Sbjct:   162 EQVRVPTGKIVLELPAGMLDDDKGDFVGTAVREVEEEIGIKLKKEDMVDLTAFLDPSTGY 221

Query:   194 KFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPD 253
             + FPS GGCDEE+S+FLYRG+V+KE I QLQGKETGLR+HGE IKVR++PYRELWR T D
Sbjct:   222 RIFPSPGGCDEEMSVFLYRGQVEKETIRQLQGKETGLREHGEFIKVRLIPYRELWRKTAD 281

Query:   254 AKVLTAIALYEMASKEELLPSR 275
             AKVL +I LYEMA +E L+ S+
Sbjct:   282 AKVLMSIGLYEMAQREGLVSSQ 303

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0019144 "ADP-sugar diphosphatase activity" evidence=IDA

GO:0080041 "ADP-ribose pyrophosphohydrolase activity" evidence=IDA

GO:0080042 "ADP-glucose pyrophosphohydrolase activity" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

DICTYBASE\|DDB_G0271376 DDB_G0271376 [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0282603 DDB_G0282603 "NUDIX hydrolase family protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SZ63	NUD14_ARATH	3, ., 6, ., 1, ., 2, 1	0.6196	0.9637	0.8608	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.1	0.976
3rd Layer	3.6.1.21	0.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		276
PLN03143		291	PLN03143, PLN03143, nudix hydrolase; Provisional	1e-155
cd03424		137	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase	6e-23
pfam00293		133	pfam00293, NUDIX, NUDIX domain	5e-10
COG0494		161	COG0494, MutT, NTP pyrophosphohydrolases including	6e-08
cd02883		123	cd02883, Nudix_Hydrolase, Nudix hydrolase is a sup	3e-05
cd04676		129	cd04676, Nudix_Hydrolase_17, Members of the Nudix	3e-04
cd04692		144	cd04692, Nudix_Hydrolase_33, Members of the Nudix	6e-04
cd03426		157	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse)	0.001
cd03673		131	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate	0.001
TIGR00052		185	TIGR00052, TIGR00052, nudix-type nucleoside diphos	0.003

>gnl\|CDD\|215602 PLN03143, PLN03143, nudix hydrolase; Provisional	Back alignment and domain information

 Score =  432 bits (1113), Expect = e-155
 Identities = 202/301 (67%), Positives = 215/301 (71%), Gaps = 44/301 (14%)

Query: 5   FYTLPKRLTVSPSPPLLHFNYRSSRTRLVCSKMPTESSPSPLTHSITIPSQLSQPVHVVA 64
           F  LP R    PS                 S     SS SPLTHSIT+P Q  QPV VVA
Sbjct: 2   FTLLPSRPLALPSR----------MAHKEASSS---SSSSPLTHSITLPGQPGQPVLVVA 48

Query: 65  APGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFK 124
           APG+S SDFR A++S+LF+QWLKNLQSE+GILA G M LKQVLIQGVDMFGKRIGFLKFK
Sbjct: 49  APGISSSDFRKAIDSSLFRQWLKNLQSESGILAYGSMSLKQVLIQGVDMFGKRIGFLKFK 108

Query: 125 ADIFCKETGQK-------------------------------VRVPTGRVILELPAGMLD 153
           ADI  KETGQK                               VRVP G+ +LELPAGMLD
Sbjct: 109 ADIIDKETGQKVPGIVFARGPAVAVLILLESEGETYAVLTEQVRVPVGKFVLELPAGMLD 168

Query: 154 DDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRG 213
           DDKGDFVGTAVREVEEETGI+LKLEDM+DLTAFL PSTGC+ FPS GGCDEEISLFLYRG
Sbjct: 169 DDKGDFVGTAVREVEEETGIKLKLEDMVDLTAFLDPSTGCRMFPSPGGCDEEISLFLYRG 228

Query: 214 RVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTAIALYEMASKEELLP 273
            VDKE I QLQGKETGLRDHGELIKV VVPYRELWR T DAKVL AIALYEMA +E LLP
Sbjct: 229 HVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRMTADAKVLMAIALYEMAKREGLLP 288

Query: 274 S 274
           S
Sbjct: 289 S 289

Length = 291

>gnl\|CDD\|239516 cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	Back alignment and domain information

>gnl\|CDD\|215841 pfam00293, NUDIX, NUDIX domain	Back alignment and domain information

>gnl\|CDD\|223568 COG0494, MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]	Back alignment and domain information

>gnl\|CDD\|239217 cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>gnl\|CDD\|240032 cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>gnl\|CDD\|240048 cd04692, Nudix_Hydrolase_33, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>gnl\|CDD\|239518 cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	Back alignment and domain information

>gnl\|CDD\|239645 cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily	Back alignment and domain information

>gnl\|CDD\|129162 TIGR00052, TIGR00052, nudix-type nucleoside diphosphatase, YffH/AdpP family	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		276
PLN03143		291	nudix hydrolase; Provisional	100.0
PRK15009		191	GDP-mannose pyrophosphatase NudK; Provisional	99.97
PRK10729		202	nudF ADP-ribose pyrophosphatase NudF; Provisional	99.97
PRK11762		185	nudE adenosine nucleotide hydrolase NudE; Provisio	99.96
TIGR00052		185	nudix-type nucleoside diphosphatase, YffH/AdpP fam	99.96
KOG3041		225	consensus Nucleoside diphosphate-sugar hydrolase o	99.94
cd03424		137	ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase)	99.78
cd04700		142	DR1025_like DR1025 from Deinococcus radiodurans, a	99.71
cd03672		145	Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalyt	99.67
PRK09438		148	nudB dihydroneopterin triphosphate pyrophosphatase	99.67
cd04683		120	Nudix_Hydrolase_24 Members of the Nudix hydrolase	99.66
TIGR02705		156	nudix_YtkD nucleoside triphosphatase YtkD. The fun	99.63
cd04691		117	Nudix_Hydrolase_32 Members of the Nudix hydrolase	99.62
PRK10707		190	putative NUDIX hydrolase; Provisional	99.61
cd04679		125	Nudix_Hydrolase_20 Members of the Nudix hydrolase	99.61
cd03671		147	Ap4A_hydrolase_plant_like Diadenosine tetraphospha	99.61
PF00293		134	NUDIX: NUDIX domain; InterPro: IPR000086 The gener	99.6
cd04684		128	Nudix_Hydrolase_25 Contains a crystal structure of	99.6
cd03673		131	Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hy	99.58
cd04680		120	Nudix_Hydrolase_21 Members of the Nudix hydrolase	99.58
PRK00714		156	RNA pyrophosphohydrolase; Reviewed	99.56
cd04681		130	Nudix_Hydrolase_22 Members of the Nudix hydrolase	99.56
cd04673		122	Nudix_Hydrolase_15 Members of the Nudix hydrolase	99.56
cd03675		134	Nudix_Hydrolase_2 Contains a crystal structure of	99.56
cd04669		121	Nudix_Hydrolase_11 Members of the Nudix hydrolase	99.54
cd04682		122	Nudix_Hydrolase_23 Members of the Nudix hydrolase	99.53
cd04664		129	Nudix_Hydrolase_7 Members of the Nudix hydrolase s	99.53
cd04693		127	Nudix_Hydrolase_34 Members of the Nudix hydrolase	99.53
cd03427		137	MTH1 MutT homolog-1 (MTH1) is a member of the Nudi	99.52
cd04666		122	Nudix_Hydrolase_9 Members of the Nudix hydrolase s	99.52
cd04697		126	Nudix_Hydrolase_38 Members of the Nudix hydrolase	99.51
cd04692		144	Nudix_Hydrolase_33 Members of the Nudix hydrolase	99.51
cd03429		131	NADH_pyrophosphatase NADH pyrophosphatase, a membe	99.5
cd03426		157	CoAse Coenzyme A pyrophosphatase (CoAse), a member	99.5
cd04670		127	Nudix_Hydrolase_12 Members of the Nudix hydrolase	99.5
cd04696		125	Nudix_Hydrolase_37 Members of the Nudix hydrolase	99.5
cd04671		123	Nudix_Hydrolase_13 Members of the Nudix hydrolase	99.49
cd03676		180	Nudix_hydrolase_3 Members of the Nudix hydrolase s	99.49
cd04695		131	Nudix_Hydrolase_36 Members of the Nudix hydrolase	99.49
cd04511		130	Nudix_Hydrolase_4 Members of the Nudix hydrolase s	99.49
cd04687		128	Nudix_Hydrolase_28 Members of the Nudix hydrolase	99.48
PRK15472		141	nucleoside triphosphatase NudI; Provisional	99.48
PRK00241		256	nudC NADH pyrophosphatase; Reviewed	99.47
cd03430		144	GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mann	99.47
cd03428		130	Ap4A_hydrolase_human_like Diadenosine tetraphospha	99.46
PRK15393		180	NUDIX hydrolase YfcD; Provisional	99.46
cd04688		126	Nudix_Hydrolase_29 Members of the Nudix hydrolase	99.46
cd04689		125	Nudix_Hydrolase_30 Members of the Nudix hydrolase	99.46
cd04667		112	Nudix_Hydrolase_10 Members of the Nudix hydrolase	99.45
cd03674		138	Nudix_Hydrolase_1 Members of the Nudix hydrolase s	99.44
PLN02325		144	nudix hydrolase	99.44
cd04677		132	Nudix_Hydrolase_18 Members of the Nudix hydrolase	99.43
PRK15434		159	GDP-mannose mannosyl hydrolase NudD; Provisional	99.43
cd04672		123	Nudix_Hydrolase_14 Members of the Nudix hydrolase	99.42
cd04686		131	Nudix_Hydrolase_27 Members of the Nudix hydrolase	99.4
cd04690		118	Nudix_Hydrolase_31 Members of the Nudix hydrolase	99.4
cd04699		129	Nudix_Hydrolase_39 Members of the Nudix hydrolase	99.39
cd04676		129	Nudix_Hydrolase_17 Members of the Nudix hydrolase	99.38
cd02885		165	IPP_Isomerase Isopentenyl diphosphate (IPP) isomer	99.36
cd04665		118	Nudix_Hydrolase_8 Members of the Nudix hydrolase s	99.36
cd04678		129	Nudix_Hydrolase_19 Members of the Nudix hydrolase	99.36
PRK03759		184	isopentenyl-diphosphate delta-isomerase; Provision	99.34
cd04694		143	Nudix_Hydrolase_35 Members of the Nudix hydrolase	99.33
cd04663		126	Nudix_Hydrolase_6 Members of the Nudix hydrolase s	99.32
cd04662		126	Nudix_Hydrolase_5 Members of the Nudix hydrolase s	99.31
PRK10546		135	pyrimidine (deoxy)nucleoside triphosphate pyrophos	99.3
cd03425		124	MutT_pyrophosphohydrolase The MutT pyrophosphohydr	99.28
cd04661		132	MRP_L46 Mitochondrial ribosomal protein L46 (MRP L	99.28
cd02883		123	Nudix_Hydrolase Nudix hydrolase is a superfamily o	99.26
COG1051		145	ADP-ribose pyrophosphatase [Nucleotide transport a	99.26
TIGR00586		128	mutt mutator mutT protein. All proteins in this fa	99.26
TIGR02150		158	IPP_isom_1 isopentenyl-diphosphate delta-isomerase	99.25
cd04685		133	Nudix_Hydrolase_26 Members of the Nudix hydrolase	99.23
PRK10776		129	nucleoside triphosphate pyrophosphohydrolase; Prov	99.2
PRK05379		340	bifunctional nicotinamide mononucleotide adenylylt	99.15
cd04674		118	Nudix_Hydrolase_16 Members of the Nudix hydrolase	99.13
PLN02709		222	nudix hydrolase	98.99
PRK08999		312	hypothetical protein; Provisional	98.98
COG2816		279	NPY1 NTP pyrophosphohydrolases containing a Zn-fin	98.93
COG0494		161	MutT NTP pyrophosphohydrolases including oxidative	98.91
KOG3084		345	consensus NADH pyrophosphatase I of the Nudix fami	98.9
KOG4432		405	consensus Uncharacterized NUDIX family hydrolase [	98.89
cd03670		186	ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase)	98.85
PLN02791		770	Nudix hydrolase homolog	98.7
PLN02552		247	isopentenyl-diphosphate delta-isomerase	98.68
KOG2839		145	consensus Diadenosine and diphosphoinositol polyph	98.65
KOG4432		405	consensus Uncharacterized NUDIX family hydrolase [	98.56
KOG3069		246	consensus Peroxisomal NUDIX hydrolase [Replication	98.4
COG4119		161	Predicted NTP pyrophosphohydrolase [DNA replicatio	98.25
PLN02839		372	nudix hydrolase	98.17
KOG0648		295	consensus Predicted NUDIX hydrolase FGF-2 and rela	97.75
COG1443		185	Idi Isopentenyldiphosphate isomerase [Lipid metabo	97.23
cd03431		118	DNA_Glycosylase_C DNA glycosylase (MutY in bacteri	97.07
KOG4195		275	consensus Transient receptor potential-related cha	96.54
COG4112		203	Predicted phosphoesterase (MutT family) [General f	93.68
KOG2937		348	consensus Decapping enzyme complex, predicted pyro	93.68
KOG0142		225	consensus Isopentenyl pyrophosphate:dimethylallyl	93.09
PF14815		114	NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3	88.8

>PLN03143 nudix hydrolase; Provisional	Back alignment and domain information

Probab=100.00  E-value=8.3e-49  Score=360.92  Aligned_cols=258  Identities=75%  Similarity=1.132  Sum_probs=219.3

Q ss_pred             ccccccceeecCCCCcccceecccccceeeeecCCCCCCCCceeeEEeCCCCCCCeeEEcCCCCChhhhhhcccceeeee
Q 023875            5 FYTLPKRLTVSPSPPLLHFNYRSSRTRLVCSKMPTESSPSPLTHSITIPSQLSQPVHVVAAPGLSESDFRCAVESTLFKQ   84 (276)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~~   84 (276)
                      ||.||+|..+.|++           ...++++|+++++  ++++||++|++++.+|+|++++|+|++|+++++++++|+.
T Consensus         2 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (291)
T PLN03143          2 FTLLPSRPLALPSR-----------MAHKEASSSSSSS--PLTHSITLPGQPGQPVLVVAAPGISSSDFRKAIDSSLFRQ   68 (291)
T ss_pred             CccCCCcccccCCC-----------cceehhccCCCCC--CceeEEEccCCCCCceeEecCCCCCHHHHHhHhcChHHHH
Confidence            45666665555544           1333444555444  7999999999889999999999999999999999999999


Q ss_pred             ceEEEEEEEEEeCCCcEEEEEEEEeeeeecCCEEEEEEEecceee-------------------------------eccC
Q 023875           85 WLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFKADIFC-------------------------------KETG  133 (276)
Q Consensus        85 ~~~~l~~~~~~~~~G~~~~~~v~~~~v~~~g~~V~vl~~~~d~~~-------------------------------~~~~  133 (276)
                      |+.+++.+..++.++++.+|.|.+|+||+||+++||+++..|...                               +.++
T Consensus        69 w~~~~~~~~~~~~~~~~~~~~~~~~~vd~fg~~~gflkv~~d~~~l~~G~~~~~~v~~rg~aVaVL~~l~~~ge~~VlLV  148 (291)
T PLN03143         69 WLKNLQSESGILAYGSMSLKQVLIQGVDMFGKRIGFLKFKADIIDKETGQKVPGIVFARGPAVAVLILLESEGETYAVLT  148 (291)
T ss_pred             HHHHhhhccccccCCCceeEEEEEEEEecccCceeEEEEEEEEEECCCCCEeeEEEEEcCCeEEEEEEEeCCCCEEEEEE
Confidence            999999999999999999999999999999999999888755421                               1356


Q ss_pred             eeeeeCCCCeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeecCCCccCeEEEEEEEEE
Q 023875          134 QKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRG  213 (276)
Q Consensus       134 rq~R~~~g~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~spg~~~e~i~lfla~~  213 (276)
                      +|||+|++.+.||||||++|+++|++++||+||++|||||.+..+++..++.+.++..+..+|++||++++.+++|+++.
T Consensus       149 rQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a~~lv~L~~~~~~~~g~~v~pspG~~dE~i~Lfla~~  228 (291)
T PLN03143        149 EQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLKLEDMVDLTAFLDPSTGCRMFPSPGGCDEEISLFLYRG  228 (291)
T ss_pred             EeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccccceEEEeeeccccCcCceEEecCCccCCeEEEEEEcc
Confidence            78999999999999999999754899999999999999999876688888755544445579999999999999999998


Q ss_pred             eehhhHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhcCChhHHHHHHHHHHHHhCCCCCCC
Q 023875          214 RVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTAIALYEMASKEELLPSR  275 (276)
Q Consensus       214 ~~~~~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i~d~ktl~al~l~~~l~~~g~l~~~  275 (276)
                      .++...+..++++.++..+++|.|++.|++++++|++++|+|+++|+++|+.++++|+||++
T Consensus       229 ~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~~aD~ktl~al~l~~~~k~~g~~~~~  290 (291)
T PLN03143        229 HVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRMTADAKVLMAIALYEMAKREGLLPSS  290 (291)
T ss_pred             ccchhhhcccccccCCCCCCCcEEEEEEEEHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCC
Confidence            87766666566655566789999999999999999999999999999999999999999986

>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional	Back alignment and domain information

>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional	Back alignment and domain information

>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional	Back alignment and domain information

>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family	Back alignment and domain information

>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]	Back alignment and domain information

>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	Back alignment and domain information

>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities	Back alignment and domain information

>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex	Back alignment and domain information

>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional	Back alignment and domain information

>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD	Back alignment and domain information

>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>PRK10707 putative NUDIX hydrolase; Provisional	Back alignment and domain information

>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily	Back alignment and domain information

>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []	Back alignment and domain information

>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function	Back alignment and domain information

>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily	Back alignment and domain information

>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>PRK00714 RNA pyrophosphohydrolase; Reviewed	Back alignment and domain information

>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function	Back alignment and domain information

>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily	Back alignment and domain information

>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP	Back alignment and domain information

>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	Back alignment and domain information

>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>PRK15472 nucleoside triphosphatase NudI; Provisional	Back alignment and domain information

>PRK00241 nudC NADH pyrophosphatase; Reviewed	Back alignment and domain information

>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily	Back alignment and domain information

>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily	Back alignment and domain information

>PRK15393 NUDIX hydrolase YfcD; Provisional	Back alignment and domain information

>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>PLN02325 nudix hydrolase	Back alignment and domain information

>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional	Back alignment and domain information

>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway	Back alignment and domain information

>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional	Back alignment and domain information

>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional	Back alignment and domain information

>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)	Back alignment and domain information

>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily	Back alignment and domain information

>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]	Back alignment and domain information

>TIGR00586 mutt mutator mutT protein	Back alignment and domain information

>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1	Back alignment and domain information

>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional	Back alignment and domain information

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional	Back alignment and domain information

>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>PLN02709 nudix hydrolase	Back alignment and domain information

>PRK08999 hypothetical protein; Provisional	Back alignment and domain information

>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]	Back alignment and domain information

>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]	Back alignment and domain information

>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]	Back alignment and domain information

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]	Back alignment and domain information

>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P	Back alignment and domain information

>PLN02791 Nudix hydrolase homolog	Back alignment and domain information

>PLN02552 isopentenyl-diphosphate delta-isomerase	Back alignment and domain information

>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]	Back alignment and domain information

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]	Back alignment and domain information

>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]	Back alignment and domain information

>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]	Back alignment and domain information

>PLN02839 nudix hydrolase	Back alignment and domain information

>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]	Back alignment and domain information

>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread AoxoG residues to CG by removing the inappropriately paired adenine base from the DNA backbone	Back alignment and domain information

>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]	Back alignment and domain information

>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]	Back alignment and domain information

>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		276
3q91_A		218	Uridine diphosphate glucose pyrophosphatase; struc	2e-17
2w4e_A		145	MUTT/nudix family protein; ADP-ribose pyrophosphat	3e-17
1g0s_A		209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	4e-16
3o6z_A		191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	4e-16
1mk1_A		207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	7e-16
2yvp_A		182	NDX2, MUTT/nudix family protein; nudix protein, AD	1e-15
1v8y_A		170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	4e-15
2dsc_A		212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	2e-14
1vhz_A		198	ADP compounds hydrolase NUDE; structural genomics;	4e-14
3fjy_A		364	Probable MUTT1 protein; dimer, protein structure i	4e-06
3shd_A		153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	9e-05
2b0v_A		153	Nudix hydrolase; structural genomics, PSI, protein	1e-04
2pbt_A		134	AP4A hydrolase; nudix protein, diadenosine polypho	2e-04
3grn_A		153	MUTT related protein; structural genomics, hydrola	3e-04
1vcd_A		126	NDX1; nudix protein, diadenosine polyphosphate, AP	3e-04
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens} Length = 218	Back alignment and structure

 Score = 77.7 bits (191), Expect = 2e-17
 Identities = 28/124 (22%), Positives = 42/124 (33%), Gaps = 14/124 (11%)

Query: 126 DIFCKETGQKVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTA 185
           D       Q     +  V +EL AG++D         A +E  EE G  L   D+  +  
Sbjct: 78  DQDGPRELQPALPGSAGVTVELCAGLVDQPGLSLEEVACKEAWEECGYHLAPSDLRRVA- 136

Query: 186 FLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYR 245
                    ++   G      ++F     V      Q  G   GL + GELI+V  +P  
Sbjct: 137 --------TYWSGVGLTGSRQTMFY--TEVTDA---QRSGPGGGLVEEGELIEVVHLPLE 183

Query: 246 ELWR 249
               
Sbjct: 184 GAQA 187

PyMOL of 3q91

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans} Length = 145	Back alignment and structure

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A Length = 209	Back alignment and structure

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} PDB: 3o52_A* 1viu_A 3o69_A 3o61_A Length = 191	Back alignment and structure

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A* Length = 207	Back alignment and structure

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A* Length = 182	Back alignment and structure

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A Length = 170	Back alignment and structure

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A* Length = 212	Back alignment and structure

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A* Length = 198	Back alignment and structure

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Length = 364	Back alignment and structure

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A Length = 153	Back alignment and structure

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1 Length = 153	Back alignment and structure

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei} Length = 153	Back alignment and structure

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A* Length = 126	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		276
1g0s_A		209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	99.95
1vhz_A		198	ADP compounds hydrolase NUDE; structural genomics;	99.94
1mk1_A		207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	99.93
2dsc_A		212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	99.93
3o6z_A		191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	99.92
2yvp_A		182	NDX2, MUTT/nudix family protein; nudix protein, AD	99.91
3q91_A		218	Uridine diphosphate glucose pyrophosphatase; struc	99.9
2w4e_A		145	MUTT/nudix family protein; ADP-ribose pyrophosphat	99.88
1v8y_A		170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	99.87
3cng_A		189	Nudix hydrolase; structural genomics, APC7497, PSI	99.66
1sjy_A		159	MUTT/nudix family protein; nudix fold, alpha-beta-	99.66
3shd_A		153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	99.65
3gg6_A		156	Nudix motif 18, nucleoside diphosphate-linked moie	99.65
2b0v_A		153	Nudix hydrolase; structural genomics, PSI, protein	99.63
3i7u_A		134	AP4A hydrolase; nudix protein, diadenosine polypho	99.62
2yyh_A		139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	99.61
1f3y_A		165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	99.61
1u20_A		212	U8 snoRNA-binding protein X29; modified nudix hydr	99.6
3h95_A		199	Nucleoside diphosphate-linked moiety X motif 6; NU	99.59
3gwy_A		140	Putative CTP pyrophosphohydrolase; structural geno	99.59
4dyw_A		157	MUTT/nudix family protein; structural genomics, ni	99.59
3son_A		149	Hypothetical nudix hydrolase; structural genomics,	99.58
2fkb_A		180	Putative nudix hydrolase YFCD; putative protein, M	99.58
2a6t_A		271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	99.57
2pbt_A		134	AP4A hydrolase; nudix protein, diadenosine polypho	99.57
1vcd_A		126	NDX1; nudix protein, diadenosine polyphosphate, AP	99.57
1q27_A		171	Putative nudix hydrolase DR0079; radiation resista	99.57
3grn_A		153	MUTT related protein; structural genomics, hydrola	99.56
1ktg_A		138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	99.56
3u53_A		155	BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical];	99.56
1nqz_A		194	COA pyrophosphatase (MUTT/nudix family protein); D	99.55
3oga_A		165	Nucleoside triphosphatase NUDI; salmonella enteric	99.55
3r03_A		144	Nudix hydrolase; structural genomics, PSI2, protei	99.54
2rrk_A		140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	99.53
3eds_A		153	MUTT/nudix family protein; MUT/nudix protein, prot	99.52
1rya_A		160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	99.52
3id9_A		171	MUTT/nudix family protein; hydrolase, protein stru	99.52
3hhj_A		158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	99.51
3i9x_A		187	MUTT/nudix family protein; structural genomics, hy	99.51
2xsq_A		217	U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp	99.51
1hzt_A		190	Isopentenyl diphosphate delta-isomerase; dimethyla	99.5
2jvb_A		146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	99.5
2o1c_A		150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	99.5
3f6a_A		159	Hydrolase, nudix family; protein structure initiat	99.5
2azw_A		148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	99.5
3q1p_A		205	Phosphohydrolase (MUTT/nudix family protein); asym	99.49
3ees_A		153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	99.49
3fcm_A		197	Hydrolase, nudix family; protein structure initiat	99.47
2fvv_A		194	Diphosphoinositol polyphosphate phosphohydrolase 1	99.47
3q93_A		176	7,8-dihydro-8-oxoguanine triphosphatase; structura	99.46
3o8s_A		206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	99.46
2kdv_A		164	RNA pyrophosphohydrolase; nudix family, magnesium,	99.45
3exq_A		161	Nudix family hydrolase; protein structure initiati	99.43
2b06_A		155	MUTT/nudix family protein; structural genomics, P	99.42
2fb1_A		226	Conserved hypothetical protein; structural genomic	99.42
2pqv_A		154	MUTT/nudix family protein; structu genomics, PSI-2	99.41
1mut_A		129	MUTT, nucleoside triphosphate pyrophosphohydrolase	99.41
1vk6_A		269	NADH pyrophosphatase; 1790429, structural genomics	99.41
3fjy_A		364	Probable MUTT1 protein; dimer, protein structure i	99.37
2qjt_B		352	Nicotinamide-nucleotide adenylyltransferase; two i	99.36
3f13_A		163	Putative nudix hydrolase family member; structural	99.34
2fml_A		273	MUTT/nudix family protein; structural genomics, PS	99.34
3fk9_A		188	Mutator MUTT protein; structural genomics, hydrola	99.34
3gz5_A		240	MUTT/nudix family protein; DNA binding protein, nu	99.32
2qjo_A		341	Bifunctional NMN adenylyltransferase/nudix hydrol;	99.31
1k2e_A		156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	99.31
1x51_A		155	A/G-specific adenine DNA glycosylase; nudix domain	99.28
3dup_A		300	MUTT/nudix family protein; nudix superfamily hydro	99.26
3e57_A		211	Uncharacterized protein TM1382; structural genomic	99.15
2dho_A		235	Isopentenyl-diphosphate delta-isomerase 1; alpha/b	99.11
2pny_A		246	Isopentenyl-diphosphate delta-isomerase 2; caroten	99.05
1q33_A		292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	98.98
3fsp_A		369	A/G-specific adenine glycosylase; protein-DNA comp	98.81
3qsj_A		232	Nudix hydrolase; structural genomics, PSI-biology,	98.77
3kvh_A		214	Protein syndesmos; NUDT16-like, NUDT16L1, nudix, R	98.6
3rh7_A		321	Hypothetical oxidoreductase; FMN-binding split bar	98.55
3bho_A		208	Cleavage and polyadenylation specificity factor su	98.07

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A	Back alignment and structure

Probab=99.95  E-value=2.6e-27  Score=207.02  Aligned_cols=172  Identities=23%  Similarity=0.334  Sum_probs=133.2

Q ss_pred             ChhhhhhcccceeeeeceEEEEEEEEE--eCCC---cEEEEEEEEeeeeecCCEEEEEEEe-cceeeeccCeeeeeCCC-
Q 023875           69 SESDFRCAVESTLFKQWLKNLQSETGI--LANG---DMLLKQVLIQGVDMFGKRIGFLKFK-ADIFCKETGQKVRVPTG-  141 (276)
Q Consensus        69 ~~~~~~~~~~~~~f~~~~~~l~~~~~~--~~~G---~~~~~~v~~~~v~~~g~~V~vl~~~-~d~~~~~~~rq~R~~~g-  141 (276)
                      ...+.+.+.+..+|++ |++++.+.++  +|||   ....|+++.+     +++|+|++++ .+..+ .+++|+|++.+ 
T Consensus        12 ~~~~~~~~~~~~v~~g-~~~v~~~~~~~~~~~g~~~~~~~r~~~~~-----~~av~vl~~~~~~~~v-LLvrq~R~~~~~   84 (209)
T 1g0s_A           12 GKNDVEIIARETLYRG-FFSLDLYRFRHRLFNGQMSHEVRREIFER-----GHAAVLLPFDPVRDEV-VLIEQIRIAAYD   84 (209)
T ss_dssp             CGGGEEEEEEEEEEES-SSEEEEEEEEEBCTTSCBCCCEEEEEEEC-----CCEEEEEEEETTTTEE-EEEEEECGGGGG
T ss_pred             CCCCcEEEEEEEEEee-eEEEEEEEEEEEcCCCCcceEEEEEEEeC-----CCEEEEEEEECCCCEE-EEEEeecccCCC
Confidence            3344555558999998 7999998886  6888   4667777765     6899999998 34544 58999999986 


Q ss_pred             ----CeEEEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeecCCCccCeEEEEEEEEEeehh
Q 023875          142 ----RVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDK  217 (276)
Q Consensus       142 ----~~~wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~spg~~~e~i~lfla~~~~~~  217 (276)
                          .+.||||||++|+| |++++||+||++||||+.+.  .+..++         .+|++||.+++.+++|++......
T Consensus        85 ~~~~~~~welPgG~ve~g-E~~~~aA~REl~EEtGl~~~--~~~~l~---------~~~~~~g~~~~~~~~f~a~~~~~~  152 (209)
T 1g0s_A           85 TSETPWLLEMVAGMIEEG-ESVEDVARREAIEEAGLIVK--RTKPVL---------SFLASPGGTSERSSIMVGEVDATT  152 (209)
T ss_dssp             GSSCSEEEECEEEECCTT-CCHHHHHHHHHHHHHCCCCC--CEEEEE---------EEESCTTTBCCEEEEEEEECCGGG
T ss_pred             CCCCCeEEEeCcccCCCC-cCHHHHHHHHHHHHcCcccC--cEEEeE---------EEecCCCccCcEEEEEEEEEcccc
Confidence                68999999999998 99999999999999999996  788887         488999999999999998753211


Q ss_pred             hHHHHhcCCCCCCCCCCceEEEEEEchhhHhhhcC-----ChhHHHHHHHHHH
Q 023875          218 EIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP-----DAKVLTAIALYEM  265 (276)
Q Consensus       218 ~~i~~~~g~~~g~~d~~E~i~v~wv~leel~~~i~-----d~ktl~al~l~~~  265 (276)
                      .     .+. .+..+++|.+++.|++++++.+++.     |+++++|+.++..
T Consensus       153 ~-----~~~-~~~~~e~E~~~~~w~~~~el~~~i~~g~i~d~~t~~al~~~~~  199 (209)
T 1g0s_A          153 A-----SGI-HGLADENEDIRVHVVSREQAYQWVEEGKIDNAASVIALQWLQL  199 (209)
T ss_dssp             C-----C---------CCSCEEEEEEHHHHHHHHHTTSSCBHHHHHHHHHHHH
T ss_pred             c-----cCC-CCCCCCCcEEEEEEEEHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            0     010 1135788999999999999998864     8899888876543

PyMOL of 1g0s

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*	Back alignment and structure

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*	Back alignment and structure

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*	Back alignment and structure

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A	Back alignment and structure

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*	Back alignment and structure

>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}	Back alignment and structure

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}	Back alignment and structure

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A	Back alignment and structure

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}	Back alignment and structure

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*	Back alignment and structure

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A	Back alignment and structure

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}	Back alignment and structure

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1	Back alignment and structure

>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*	Back alignment and structure

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}	Back alignment and structure

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*	Back alignment and structure

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*	Back alignment and structure

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}	Back alignment and structure

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0	Back alignment and structure

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}	Back alignment and structure

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}	Back alignment and structure

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2	Back alignment and structure

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*	Back alignment and structure

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*	Back alignment and structure

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A	Back alignment and structure

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}	Back alignment and structure

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*	Back alignment and structure

>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*	Back alignment and structure

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A	Back alignment and structure

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A	Back alignment and structure

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0	Back alignment and structure

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}	Back alignment and structure

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*	Back alignment and structure

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}	Back alignment and structure

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}	Back alignment and structure

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}	Back alignment and structure

>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A	Back alignment and structure

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*	Back alignment and structure

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}	Back alignment and structure

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A	Back alignment and structure

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}	Back alignment and structure

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1	Back alignment and structure

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A	Back alignment and structure

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*	Back alignment and structure

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}	Back alignment and structure

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*	Back alignment and structure

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A	Back alignment and structure

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}	Back alignment and structure

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A	Back alignment and structure

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}	Back alignment and structure

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1	Back alignment and structure

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6	Back alignment and structure

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}	Back alignment and structure

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*	Back alignment and structure

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A	Back alignment and structure

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}	Back alignment and structure

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B	Back alignment and structure

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}	Back alignment and structure

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6	Back alignment and structure

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}	Back alignment and structure

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*	Back alignment and structure

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}	Back alignment and structure

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A	Back alignment and structure

>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3	Back alignment and structure

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}	Back alignment and structure

>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}	Back alignment and structure

>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*	Back alignment and structure

>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}	Back alignment and structure

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*	Back alignment and structure

>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*	Back alignment and structure

>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}	Back alignment and structure

>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}	Back alignment and structure

>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}	Back alignment and structure

>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		276
d1g0sa_		209	d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escheri	3e-07
d1mqea_		202	d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobac	1e-06
d1sjya_		158	d.113.1.1 (A:) Hypothetical protein DR1025 {Deinoc	4e-05
d1v8ya_		158	d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus	6e-05
d1vhza_		186	d.113.1.1 (A:) ADP compounds hydrolase NudE {Esche	6e-04
d2fkba1		161	d.113.1.2 (A:8-168) Hypothetical protein YfcD {Esc	0.003

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]} Length = 209	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Escherichia coli [TaxId: 562]

 Score = 47.4 bits (112), Expect = 3e-07
 Identities = 30/140 (21%), Positives = 51/140 (36%), Gaps = 24/140 (17%)

Query: 137 RVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFF 196
                  +LE+ AGM+++ +      A RE  EE G+ +K    +             F 
Sbjct: 84  DTSETPWLLEMVAGMIEEGE-SVEDVARREAIEEAGLIVKRTKPV-----------LSFL 131

Query: 197 PSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWR-----TT 251
            S GG  E  S+ +       E+         GL D  E I+V VV   + ++       
Sbjct: 132 ASPGGTSERSSIMVG------EVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEGKI 185

Query: 252 PDAKVLTAIALYEMASKEEL 271
            +A  + A+  +     + L
Sbjct: 186 DNAASVIAL-QWLQLHHQAL 204

PyMOL of d1g0sa_

>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 202	Back information, alignment and structure

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]} Length = 158	Back information, alignment and structure

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]} Length = 158	Back information, alignment and structure

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]} Length = 186	Back information, alignment and structure

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]} Length = 161	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		276
d1vhza_		186	ADP compounds hydrolase NudE {Escherichia coli [Ta	100.0
d1g0sa_		209	ADP-ribose pyrophosphatase {Escherichia coli [TaxI	99.98
d1mqea_		202	ADP-ribose pyrophosphatase {Mycobacterium tubercul	99.98
d1viua_		189	ADP-ribose pyrophosphatase homologue YffH {Escheri	99.95
d1v8ya_		158	ADP-ribose pyrophosphatase {Thermus thermophilus [	99.94
d1sjya_		158	Hypothetical protein DR1025 {Deinococcus radiodura	99.72
d1vcda1		126	AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId:	99.65
d2b0va1		146	Hypothetical protein NE0184 {Nitrosomonas europaea	99.65
d1vk6a2		131	NADH pyrophosphatase {Escherichia coli [TaxId: 562	99.62
d2fkba1		161	Hypothetical protein YfcD {Escherichia coli [TaxId	99.58
d2b06a1		155	Hypothetical protein SP1235 (spr1115) {Streptococc	99.58
d2fvva1		135	Diphosphoinositol polyphosphate phosphohydrolase {	99.58
d2a6ta2		151	mRNA decapping enzyme Dcp2p catalytic domain {Schi	99.55
d2o5fa1		162	Hypothetical protein DR0079 {Deinococcus radiodura	99.54
d2azwa1		147	Hypothetical protein EF1141 {Enterococcus faecalis	99.52
d1ktga_		137	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.51
d1jkna_		165	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.51
d1ryaa_		160	GDP-mannose mannosyl hydrolase NudD {Escherichia c	99.5
d2fb1a2		147	Hypothetical protein BT0354, N-terminal domain {Ba	99.5
d1irya_		156	7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Hum	99.49
d1hzta_		153	Isopentenyl diphosphate isomerase {Escherichia col	99.48
d1xsba_		153	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.46
d1puna_		129	Nucleoside triphosphate pyrophosphorylase (MutT) {	99.45
d1nqza_		187	Coenzyme A pyrophosphatase {Deinococcus radioduran	99.35
d1k2ea_		152	Hypothetical protein PAE3301 {Archaeon Pyrobaculum	99.32
d2fmla2		202	Hypothetical protein EF2700, N-terminal domain {En	99.31
d1u20a1		196	U8 snorna-binding protein x29 {African clawed frog	99.06
d1q33a_		292	NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {	98.84
d1rrqa2		127	Adenine glycosylase MutY, C-terminal domain {Bacil	98.79
d1x51a1		142	A/G-specific adenine DNA glycosylase {Human (Homo	98.34

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.8e-32  Score=231.66  Aligned_cols=178  Identities=15%  Similarity=0.126  Sum_probs=147.1

Q ss_pred             CCCCChhhhhhcccceeeeeceEEEEEEEEEeCCCcEEEEEEEEeeeeecCCEEEEEEEecceeeeccCeeeeeCCCCeE
Q 023875           65 APGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFKADIFCKETGQKVRVPTGRVI  144 (276)
Q Consensus        65 ~~~~~~~~~~~~~~~~~f~~~~~~l~~~~~~~~~G~~~~~~v~~~~v~~~g~~V~vl~~~~d~~~~~~~rq~R~~~g~~~  144 (276)
                      +.++.+..+.+  +..+|+++|++++.+.+++|||....|+++.+.   .+++|+|++...+..  .++||||+|.+.+.
T Consensus         3 ~~~~~k~~il~--~~~v~~~~~f~v~~~~v~~p~G~~~~~~~~~~~---~~~~v~vi~~~~~~v--lLvrq~R~~~~~~~   75 (186)
T d1vhza_           3 SKSLQKPTILN--VETVARSRLFTVESVDLEFSNGVRRVYERMRPT---NREAVMIVPIVDDHL--ILIREYAVGTESYE   75 (186)
T ss_dssp             CCCCCCCEEEE--EEEEEECSSCEEEEEEEECTTSCEEEEEEECCC---CCCEEEEEEEETTEE--EEEEEEETTTTEEE
T ss_pred             CccCcCCEEee--eEEEEeCCEEEEEEEEEEcCCCCEEEEEEEEeC---CCcEEEEEEccCCEE--EEEEeeecCCCceE
Confidence            44455445544  789999999999999999999998888877542   124788888876654  48999999999999


Q ss_pred             EEeceeecCCCCCCHHHHHHHHHHHHhCCcccccceeeeccccCCCCceeeecCCCccCeEEEEEEEEEeehhhHHHHhc
Q 023875          145 LELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQ  224 (276)
Q Consensus       145 wElPaG~vD~G~Es~~eAA~REL~EETGl~~~~~~l~~L~~l~~~~~~~~~y~spg~~~e~i~lfla~~~~~~~~i~~~~  224 (276)
                      ||||||++|+| |++++||+||++||||+.+.  ++..++         .+|++||.+++.+++|++......       
T Consensus        76 ~elP~G~ie~g-E~p~~aA~REl~EEtG~~~~--~~~~l~---------~~~~~~g~~~~~~~~~~a~~~~~~-------  136 (186)
T d1vhza_          76 LGFSKGLIDPG-ESVYEAANRELKEEVGFGAN--DLTFLK---------KLSMAPSYFSSKMNIVVAQDLYPE-------  136 (186)
T ss_dssp             EECEEEECCTT-CCHHHHHHHHHHHHHSEEEE--EEEEEE---------EEECCTTTCCCEEEEEEEEEEEEC-------
T ss_pred             eecccccCCCC-cCHHHHHHHHHHHHhccccc--cceecc---------eeeccccccceEEEEEEEEecccc-------
Confidence            99999999998 99999999999999999987  788887         489999999999999999865432       


Q ss_pred             CCCCCCCCCCceEEEEEEchhhHhhhcC-----ChhHHHHHHHHH-HHHhCCC
Q 023875          225 GKETGLRDHGELIKVRVVPYRELWRTTP-----DAKVLTAIALYE-MASKEEL  271 (276)
Q Consensus       225 g~~~g~~d~~E~i~v~wv~leel~~~i~-----d~ktl~al~l~~-~l~~~g~  271 (276)
                       ..  ..+++|.+++.|+|++++.+++.     |+++++|+.+++ .|+.+|+
T Consensus       137 -~~--~~de~E~~~~~~~~~~e~~~~i~~g~i~da~ti~al~~~~~~L~~~~r  186 (186)
T d1vhza_         137 -SL--EGDEPEPLPQVRWPLAHMMDLLEDPDFNEARNVSALFLVREWLKGQGR  186 (186)
T ss_dssp             -CC--CCCCSSCCCEEEEEGGGGGGGGGCTTTCBHHHHHHHHHHHHHHHHTTC
T ss_pred             -cC--CCCCCcEEEEEEEeHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHcCC
Confidence             11  45788999999999999999875     788999987765 5666664

PyMOL of d1vhza_

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]}	Back information, alignment and structure

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]}	Back information, alignment and structure

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]}	Back information, alignment and structure

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]}	Back information, alignment and structure

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]}	Back information, alignment and structure

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]}	Back information, alignment and structure

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]}	Back information, alignment and structure

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]}	Back information, alignment and structure

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}	Back information, alignment and structure

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]}	Back information, alignment and structure

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}	Back information, alignment and structure

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]}	Back information, alignment and structure

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]}	Back information, alignment and structure

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure